Query 004850
Match_columns 727
No_of_seqs 467 out of 3662
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1E-113 3E-118 1019.6 61.1 673 40-723 68-752 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1E-54 3.5E-59 515.6 30.8 531 45-602 9-628 (715)
3 3i4u_A ATP-dependent RNA helic 100.0 5.6E-54 1.9E-58 444.7 24.1 248 453-704 5-254 (270)
4 2p6r_A Afuhel308 helicase; pro 100.0 2.4E-53 8.2E-58 502.6 30.5 524 45-601 2-606 (702)
5 2zj8_A DNA helicase, putative 100.0 6.1E-50 2.1E-54 474.8 30.1 548 45-631 2-644 (720)
6 2db3_A ATP-dependent RNA helic 100.0 9.5E-42 3.2E-46 381.0 23.9 344 35-419 47-407 (434)
7 3eiq_A Eukaryotic initiation f 100.0 3.1E-41 1.1E-45 373.1 14.1 345 39-423 35-391 (414)
8 2j0s_A ATP-dependent RNA helic 100.0 3E-39 1E-43 357.3 22.0 341 41-422 34-386 (410)
9 2i4i_A ATP-dependent RNA helic 100.0 5.1E-39 1.7E-43 355.9 21.6 344 40-423 11-387 (417)
10 3fht_A ATP-dependent RNA helic 100.0 2.9E-38 1E-42 348.8 23.2 342 42-420 23-380 (412)
11 3pey_A ATP-dependent RNA helic 100.0 5.3E-38 1.8E-42 344.3 24.7 340 43-420 4-357 (395)
12 1s2m_A Putative ATP-dependent 100.0 8.4E-38 2.9E-42 344.4 25.9 341 42-423 19-369 (400)
13 3fmp_B ATP-dependent RNA helic 100.0 1.6E-38 5.4E-43 359.4 15.4 344 43-420 91-447 (479)
14 1hv8_A Putative ATP-dependent 100.0 2.4E-37 8.1E-42 335.7 23.0 333 44-423 6-349 (367)
15 1fuu_A Yeast initiation factor 100.0 3E-38 1E-42 346.7 10.2 346 38-423 15-370 (394)
16 1xti_A Probable ATP-dependent 100.0 1.2E-36 4.2E-41 333.6 23.1 338 44-421 8-359 (391)
17 3o8b_A HCV NS3 protease/helica 100.0 3E-37 1E-41 354.4 17.1 306 57-422 208-517 (666)
18 2v1x_A ATP-dependent DNA helic 100.0 1.8E-35 6.1E-40 341.0 22.0 333 45-423 22-378 (591)
19 3i5x_A ATP-dependent RNA helic 100.0 3.1E-35 1.1E-39 339.1 23.0 340 51-422 79-452 (563)
20 3sqw_A ATP-dependent RNA helic 100.0 4.7E-35 1.6E-39 338.7 24.0 339 51-421 28-400 (579)
21 3l9o_A ATP-dependent RNA helic 100.0 6.2E-36 2.1E-40 365.7 16.9 344 45-419 163-597 (1108)
22 2z0m_A 337AA long hypothetical 100.0 3.1E-35 1E-39 315.5 18.2 311 51-417 1-321 (337)
23 2z83_A Helicase/nucleoside tri 100.0 1.2E-35 4.2E-40 333.5 13.8 293 75-419 15-313 (459)
24 2jlq_A Serine protease subunit 100.0 1.1E-35 3.6E-40 333.4 12.0 300 66-418 4-310 (451)
25 2ykg_A Probable ATP-dependent 100.0 2E-35 7E-40 349.1 11.8 332 58-421 5-518 (696)
26 2whx_A Serine protease/ntpase/ 100.0 2.8E-35 9.7E-40 340.4 11.8 315 49-418 155-477 (618)
27 1oyw_A RECQ helicase, ATP-depe 100.0 3.5E-34 1.2E-38 326.6 20.2 329 44-422 2-346 (523)
28 3fho_A ATP-dependent RNA helic 100.0 5.5E-35 1.9E-39 332.6 7.8 340 44-419 119-470 (508)
29 4a4z_A Antiviral helicase SKI2 100.0 1.9E-34 6.4E-39 349.7 11.0 380 65-474 38-556 (997)
30 3rc3_A ATP-dependent RNA helic 100.0 2.2E-33 7.4E-38 325.9 14.2 311 78-449 152-476 (677)
31 3oiy_A Reverse gyrase helicase 100.0 1.8E-33 6.1E-38 311.9 11.9 312 54-419 9-365 (414)
32 4f92_B U5 small nuclear ribonu 100.0 6.5E-31 2.2E-35 332.0 35.5 463 53-535 913-1462(1724)
33 4a2p_A RIG-I, retinoic acid in 100.0 1E-32 3.5E-37 316.7 17.1 333 63-423 4-512 (556)
34 3tbk_A RIG-I helicase domain; 100.0 5.6E-33 1.9E-37 318.4 13.3 330 65-422 3-510 (555)
35 1yks_A Genome polyprotein [con 100.0 5.2E-32 1.8E-36 302.3 17.8 289 77-417 4-297 (440)
36 2wv9_A Flavivirin protease NS2 100.0 6.9E-32 2.3E-36 314.2 15.9 300 66-417 215-531 (673)
37 4f92_B U5 small nuclear ribonu 100.0 4.1E-30 1.4E-34 324.8 31.4 455 63-534 76-630 (1724)
38 2xgj_A ATP-dependent RNA helic 100.0 3.5E-31 1.2E-35 321.1 20.9 322 65-419 85-499 (1010)
39 4a2q_A RIG-I, retinoic acid in 100.0 4.7E-31 1.6E-35 316.0 18.9 333 62-422 244-752 (797)
40 1tf5_A Preprotein translocase 100.0 1.2E-30 4.2E-35 302.0 19.7 314 61-420 79-546 (844)
41 2v6i_A RNA helicase; membrane, 100.0 6.6E-31 2.2E-35 292.7 16.9 285 80-417 1-288 (431)
42 1wp9_A ATP-dependent RNA helic 100.0 5.5E-30 1.9E-34 287.2 19.6 317 65-423 8-479 (494)
43 4a2w_A RIG-I, retinoic acid in 100.0 4.8E-30 1.6E-34 311.0 20.4 334 61-422 243-752 (936)
44 4gl2_A Interferon-induced heli 100.0 2.2E-30 7.4E-35 306.2 9.1 324 63-418 4-517 (699)
45 4ddu_A Reverse gyrase; topoiso 100.0 6.9E-30 2.4E-34 312.2 10.5 343 65-445 77-525 (1104)
46 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-29 5.1E-34 309.3 11.9 273 61-373 53-352 (1054)
47 2fsf_A Preprotein translocase 100.0 4.7E-28 1.6E-32 279.6 19.6 311 65-420 73-584 (853)
48 1gm5_A RECG; helicase, replica 100.0 1.9E-29 6.6E-34 297.1 6.9 314 53-417 356-695 (780)
49 1nkt_A Preprotein translocase 99.9 3.1E-27 1E-31 273.1 22.0 314 62-421 108-619 (922)
50 2eyq_A TRCF, transcription-rep 99.9 3.2E-27 1.1E-31 290.5 20.3 303 63-420 601-923 (1151)
51 3eaq_A Heat resistant RNA depe 99.9 9.9E-28 3.4E-32 241.3 9.7 185 251-474 7-211 (212)
52 3i32_A Heat resistant RNA depe 99.9 1.3E-27 4.4E-32 252.2 8.0 191 250-479 3-213 (300)
53 2oca_A DAR protein, ATP-depend 99.9 2.4E-26 8.1E-31 261.6 8.6 302 64-417 111-453 (510)
54 2fwr_A DNA repair protein RAD2 99.9 4.8E-26 1.6E-30 256.5 10.2 293 65-423 92-458 (472)
55 3llm_A ATP-dependent RNA helic 99.9 3.6E-25 1.2E-29 226.1 15.6 188 52-243 47-235 (235)
56 3h1t_A Type I site-specific re 99.9 2.9E-23 9.9E-28 240.5 14.9 306 66-409 178-545 (590)
57 3jux_A Protein translocase sub 99.8 2.4E-20 8.1E-25 211.4 22.1 165 218-421 411-589 (822)
58 2hjv_A ATP-dependent RNA helic 99.8 5.3E-21 1.8E-25 183.9 12.6 137 248-422 8-145 (163)
59 2rb4_A ATP-dependent RNA helic 99.8 6.9E-21 2.4E-25 185.3 12.1 136 248-421 6-149 (175)
60 1fuk_A Eukaryotic initiation f 99.8 5.5E-21 1.9E-25 184.1 10.3 136 249-422 3-140 (165)
61 1t5i_A C_terminal domain of A 99.8 6.8E-21 2.3E-25 184.8 10.8 134 248-419 4-138 (172)
62 3dmq_A RNA polymerase-associat 99.8 8.3E-21 2.8E-25 230.5 12.9 120 269-421 493-617 (968)
63 2p6n_A ATP-dependent RNA helic 99.8 1.2E-20 4.1E-25 186.3 9.8 133 248-419 28-161 (191)
64 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.5E-20 5.1E-25 184.7 10.3 138 248-422 18-156 (185)
65 1qde_A EIF4A, translation init 99.8 2.6E-19 8.9E-24 180.8 13.5 204 40-246 10-219 (224)
66 1z63_A Helicase of the SNF2/RA 99.8 6.3E-19 2.2E-23 199.8 17.1 114 278-422 340-456 (500)
67 3ber_A Probable ATP-dependent 99.8 1E-19 3.5E-24 187.4 9.3 199 40-241 39-244 (249)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.1E-18 3.8E-23 210.8 19.7 313 65-417 270-707 (1038)
69 3fmo_B ATP-dependent RNA helic 99.8 4.7E-19 1.6E-23 187.5 14.1 197 42-241 90-294 (300)
70 3bor_A Human initiation factor 99.8 4.2E-19 1.4E-23 181.3 12.7 201 38-241 24-231 (237)
71 2d7d_A Uvrabc system protein B 99.8 6.1E-19 2.1E-23 205.7 15.2 169 216-421 386-558 (661)
72 2yjt_D ATP-dependent RNA helic 99.7 1.2E-20 4.2E-25 182.7 0.0 135 250-422 4-140 (170)
73 1q0u_A Bstdead; DEAD protein, 99.8 8.3E-19 2.8E-23 176.6 12.6 195 44-241 4-208 (219)
74 3fe2_A Probable ATP-dependent 99.8 6.8E-19 2.3E-23 180.2 11.6 200 39-240 24-233 (242)
75 1c4o_A DNA nucleotide excision 99.8 1.2E-18 4.1E-23 203.4 15.1 168 216-420 380-551 (664)
76 2oxc_A Probable ATP-dependent 99.8 9.5E-19 3.3E-23 177.7 9.5 195 41-237 21-222 (230)
77 1vec_A ATP-dependent RNA helic 99.8 1.9E-18 6.4E-23 172.0 11.3 194 44-240 3-203 (206)
78 2pl3_A Probable ATP-dependent 99.8 1.8E-18 6.2E-23 176.2 10.7 202 41-244 22-233 (236)
79 3dkp_A Probable ATP-dependent 99.7 4.2E-18 1.4E-22 174.5 12.2 201 39-241 20-237 (245)
80 3iuy_A Probable ATP-dependent 99.7 4.3E-18 1.5E-22 172.5 11.9 199 39-241 14-225 (228)
81 1t6n_A Probable ATP-dependent 99.7 9.1E-18 3.1E-22 169.0 12.0 196 43-240 13-216 (220)
82 3ly5_A ATP-dependent RNA helic 99.7 4E-18 1.4E-22 176.8 9.3 191 44-236 52-254 (262)
83 2gxq_A Heat resistant RNA depe 99.7 3.1E-17 1.1E-21 163.2 13.7 194 45-241 2-202 (207)
84 1wrb_A DJVLGB; RNA helicase, D 99.7 6E-18 2E-22 174.3 8.6 198 42-241 21-236 (253)
85 1z3i_X Similar to RAD54-like; 99.7 1.1E-15 3.8E-20 178.2 22.2 115 278-423 415-532 (644)
86 3mwy_W Chromo domain-containin 99.6 6.5E-16 2.2E-20 184.6 14.2 115 278-423 571-688 (800)
87 2ipc_A Preprotein translocase 99.5 1.6E-12 5.4E-17 150.4 23.4 127 62-195 76-213 (997)
88 3tui_C Methionine import ATP-b 99.4 2E-13 6.9E-18 146.4 8.7 150 78-234 51-233 (366)
89 3tif_A Uncharacterized ABC tra 99.4 2.4E-13 8.1E-18 138.3 6.5 145 78-228 28-208 (235)
90 3rlf_A Maltose/maltodextrin im 99.4 4.2E-13 1.5E-17 144.8 8.4 150 78-234 26-203 (381)
91 3fvq_A Fe(3+) IONS import ATP- 99.4 6.1E-13 2.1E-17 142.6 8.6 150 78-234 27-208 (359)
92 3b6e_A Interferon-induced heli 99.4 4.7E-13 1.6E-17 133.4 6.7 162 62-225 29-216 (216)
93 2pcj_A ABC transporter, lipopr 99.3 7.6E-13 2.6E-17 133.6 7.0 143 78-228 27-202 (224)
94 1z47_A CYSA, putative ABC-tran 99.3 1.5E-12 5E-17 139.7 8.7 149 78-233 38-214 (355)
95 3gfo_A Cobalt import ATP-bindi 99.3 1.1E-12 3.8E-17 136.2 7.5 149 78-233 31-212 (275)
96 4g1u_C Hemin import ATP-bindin 99.3 1.1E-12 3.7E-17 135.8 7.1 149 78-233 34-216 (266)
97 3d31_A Sulfate/molybdate ABC t 99.3 1.2E-12 4.1E-17 140.2 7.6 149 78-233 23-196 (348)
98 1z5z_A Helicase of the SNF2/RA 99.3 1.5E-12 5.2E-17 135.2 8.1 130 260-422 95-227 (271)
99 2it1_A 362AA long hypothetical 99.3 1.9E-12 6.5E-17 139.3 8.6 149 78-233 26-202 (362)
100 2yyz_A Sugar ABC transporter, 99.3 1.9E-12 6.7E-17 139.0 8.6 149 78-233 26-202 (359)
101 1sgw_A Putative ABC transporte 99.3 1.9E-12 6.6E-17 129.4 7.9 139 78-227 32-194 (214)
102 1g6h_A High-affinity branched- 99.3 2.8E-12 9.7E-17 132.2 8.8 149 78-228 30-215 (257)
103 1oxx_K GLCV, glucose, ABC tran 99.3 1.8E-12 6.1E-17 139.3 7.4 149 78-233 28-209 (353)
104 2vl7_A XPD; helicase, unknown 99.3 2.2E-12 7.6E-17 147.2 7.8 129 264-415 370-518 (540)
105 1v43_A Sugar-binding transport 99.3 2.1E-12 7.3E-17 139.4 7.1 149 78-233 34-210 (372)
106 2olj_A Amino acid ABC transpor 99.3 2.4E-12 8.1E-17 132.9 7.1 148 78-233 47-227 (263)
107 1vpl_A ABC transporter, ATP-bi 99.3 3.2E-12 1.1E-16 131.4 8.1 142 78-227 38-207 (256)
108 1g29_1 MALK, maltose transport 99.3 2.3E-12 7.8E-17 139.4 7.1 150 78-234 26-209 (372)
109 1ji0_A ABC transporter; ATP bi 99.3 3.1E-12 1.1E-16 130.5 7.7 154 78-233 29-207 (240)
110 1b0u_A Histidine permease; ABC 99.3 2E-12 6.9E-17 133.6 5.9 148 78-233 29-221 (262)
111 2onk_A Molybdate/tungstate ABC 99.2 3E-12 1E-16 130.5 5.2 148 78-233 22-195 (240)
112 2nq2_C Hypothetical ABC transp 99.2 2.1E-11 7E-16 125.3 10.4 152 78-233 28-197 (253)
113 2yz2_A Putative ABC transporte 99.2 7.5E-12 2.6E-16 129.6 6.7 148 78-227 30-199 (266)
114 2ihy_A ABC transporter, ATP-bi 99.2 8E-12 2.7E-16 130.1 5.6 142 78-227 44-224 (279)
115 2qi9_C Vitamin B12 import ATP- 99.2 1.1E-11 3.8E-16 126.9 5.7 148 78-233 23-201 (249)
116 2ff7_A Alpha-hemolysin translo 99.2 2.8E-11 9.5E-16 123.9 7.5 147 78-228 32-206 (247)
117 2ixe_A Antigen peptide transpo 99.2 1.6E-11 5.5E-16 127.4 5.6 150 77-228 41-219 (271)
118 2d2e_A SUFC protein; ABC-ATPas 99.1 1.5E-11 5.2E-16 126.1 4.4 143 78-227 26-204 (250)
119 3nh6_A ATP-binding cassette SU 99.1 3.4E-11 1.1E-15 126.8 5.9 147 78-228 77-251 (306)
120 2zu0_C Probable ATP-dependent 99.1 4.2E-11 1.4E-15 124.0 5.2 143 78-227 43-225 (267)
121 1mv5_A LMRA, multidrug resista 99.1 2.8E-11 9.4E-16 123.7 3.6 147 78-228 25-200 (243)
122 2ghi_A Transport protein; mult 99.1 4.3E-11 1.5E-15 123.4 4.7 147 78-228 43-216 (260)
123 3ozx_A RNAse L inhibitor; ATP 99.0 7.1E-10 2.4E-14 125.8 13.0 148 78-234 291-455 (538)
124 2pjz_A Hypothetical protein ST 99.0 8.2E-11 2.8E-15 121.4 4.3 135 78-227 28-186 (263)
125 1rif_A DAR protein, DNA helica 99.0 8.5E-11 2.9E-15 122.7 4.1 148 65-227 112-263 (282)
126 3gd7_A Fusion complex of cysti 99.0 8.1E-11 2.8E-15 127.8 3.9 142 77-228 43-216 (390)
127 3bk7_A ABC transporter ATP-bin 99.0 8E-10 2.7E-14 127.0 11.8 148 78-233 379-540 (607)
128 2cbz_A Multidrug resistance-as 99.0 1.8E-10 6.3E-15 117.1 5.6 147 78-228 28-191 (237)
129 1yqt_A RNAse L inhibitor; ATP- 99.0 1.4E-09 4.9E-14 123.5 11.9 148 78-233 309-470 (538)
130 3j16_B RLI1P; ribosome recycli 98.9 2.2E-09 7.6E-14 123.2 11.7 146 80-234 377-537 (608)
131 2yl4_A ATP-binding cassette SU 98.9 5.2E-10 1.8E-14 129.1 5.7 148 78-229 367-545 (595)
132 2pze_A Cystic fibrosis transme 98.9 5.7E-10 1.9E-14 112.8 5.3 144 78-228 31-192 (229)
133 3b5x_A Lipid A export ATP-bind 98.9 4.5E-10 1.5E-14 129.3 4.8 148 77-228 365-541 (582)
134 3b60_A Lipid A export ATP-bind 98.9 9.7E-10 3.3E-14 126.5 7.5 147 78-228 366-541 (582)
135 3crv_A XPD/RAD3 related DNA he 98.9 4.8E-08 1.6E-12 111.7 21.2 173 217-415 316-528 (551)
136 3qf4_A ABC transporter, ATP-bi 98.9 6.6E-10 2.3E-14 127.9 5.1 147 78-228 366-540 (587)
137 4a82_A Cystic fibrosis transme 98.9 1.2E-09 4.3E-14 125.5 6.9 147 78-228 364-538 (578)
138 3qf4_B Uncharacterized ABC tra 98.9 6.2E-10 2.1E-14 128.4 4.3 149 78-230 378-554 (598)
139 1yqt_A RNAse L inhibitor; ATP- 98.8 6.8E-09 2.3E-13 117.9 11.4 66 160-227 152-219 (538)
140 3bk7_A ABC transporter ATP-bin 98.8 7.2E-09 2.5E-13 119.1 11.1 66 160-227 222-289 (607)
141 2fz4_A DNA repair protein RAD2 98.8 1.1E-08 3.7E-13 103.9 11.2 137 65-227 92-229 (237)
142 2bbs_A Cystic fibrosis transme 98.8 1.8E-09 6E-14 113.0 4.5 143 78-228 61-221 (290)
143 2iw3_A Elongation factor 3A; a 98.8 7E-09 2.4E-13 123.7 8.8 139 77-227 457-606 (986)
144 3ozx_A RNAse L inhibitor; ATP 98.7 1.2E-08 4.3E-13 115.6 9.1 65 160-227 132-198 (538)
145 3ux8_A Excinuclease ABC, A sub 98.7 4E-08 1.4E-12 115.0 10.5 66 161-228 197-266 (670)
146 4f4c_A Multidrug resistance pr 98.7 9.5E-09 3.2E-13 128.5 4.9 147 77-227 1101-1277(1321)
147 3j16_B RLI1P; ribosome recycli 98.6 2.7E-08 9.4E-13 114.1 7.5 72 160-233 215-289 (608)
148 4gp7_A Metallophosphoesterase; 98.6 5.6E-09 1.9E-13 100.5 1.3 137 78-228 6-161 (171)
149 3g5u_A MCG1178, multidrug resi 98.6 1.5E-08 5E-13 126.5 4.6 148 77-228 412-587 (1284)
150 3g5u_A MCG1178, multidrug resi 98.6 2.2E-08 7.4E-13 125.0 5.9 148 77-228 1055-1232(1284)
151 3ux8_A Excinuclease ABC, A sub 98.6 6.4E-08 2.2E-12 113.2 8.3 66 161-228 538-608 (670)
152 4f4c_A Multidrug resistance pr 98.5 4.1E-08 1.4E-12 122.8 5.4 146 78-227 441-614 (1321)
153 3b85_A Phosphate starvation-in 98.5 6.4E-08 2.2E-12 96.1 3.8 145 64-227 5-159 (208)
154 1ye8_A Protein THEP1, hypothet 98.3 7.9E-07 2.7E-11 86.0 8.0 62 161-224 71-138 (178)
155 3pih_A Uvrabc system protein A 98.3 1.1E-06 3.9E-11 104.6 9.6 66 161-228 800-870 (916)
156 4aby_A DNA repair protein RECN 98.3 8.1E-07 2.8E-11 97.6 7.7 58 167-227 296-357 (415)
157 2w0m_A SSO2452; RECA, SSPF, un 98.2 5.8E-06 2E-10 82.5 10.1 140 77-226 19-168 (235)
158 2r6f_A Excinuclease ABC subuni 98.1 2.1E-06 7.3E-11 101.8 7.5 66 161-228 840-910 (972)
159 2iw3_A Elongation factor 3A; a 98.1 1.4E-06 4.8E-11 104.0 5.7 61 162-227 897-959 (986)
160 2ygr_A Uvrabc system protein A 98.1 2.2E-06 7.6E-11 102.0 7.2 66 161-228 858-928 (993)
161 2ehv_A Hypothetical protein PH 98.1 4.1E-06 1.4E-10 84.8 8.4 27 77-103 26-52 (251)
162 2vf7_A UVRA2, excinuclease ABC 98.1 2.8E-06 9.4E-11 100.5 6.9 66 161-228 725-795 (842)
163 1nlf_A Regulatory protein REPA 98.1 1E-05 3.4E-10 83.9 9.6 142 76-227 25-182 (279)
164 2pt7_A CAG-ALFA; ATPase, prote 98.0 4.5E-06 1.5E-10 88.8 7.0 121 73-234 163-283 (330)
165 2npi_A Protein CLP1; CLP1-PCF1 98.0 7.7E-07 2.6E-11 98.8 0.9 58 164-227 233-299 (460)
166 3thx_B DNA mismatch repair pro 97.8 9.7E-06 3.3E-10 96.8 4.9 69 165-235 734-805 (918)
167 1e69_A Chromosome segregation 97.8 6.5E-05 2.2E-09 79.5 10.5 65 161-228 214-284 (322)
168 1tq4_A IIGP1, interferon-induc 97.8 4.2E-06 1.4E-10 91.3 1.2 70 166-235 154-247 (413)
169 1w36_D RECD, exodeoxyribonucle 97.8 3.4E-05 1.1E-09 89.0 8.0 143 68-225 151-298 (608)
170 3b9q_A Chloroplast SRP recepto 97.7 1.6E-05 5.4E-10 83.4 4.6 132 78-224 97-255 (302)
171 1cr0_A DNA primase/helicase; R 97.7 0.0001 3.5E-09 76.9 10.8 59 167-226 130-197 (296)
172 1tf7_A KAIC; homohexamer, hexa 97.7 5.6E-05 1.9E-09 85.6 8.1 133 77-226 277-417 (525)
173 3sop_A Neuronal-specific septi 97.7 1.9E-06 6.5E-11 89.0 -3.9 56 164-227 96-151 (270)
174 3jvv_A Twitching mobility prot 97.7 9.1E-05 3.1E-09 79.4 8.9 51 176-233 188-238 (356)
175 2og2_A Putative signal recogni 97.6 2.3E-05 7.8E-10 84.0 4.0 131 79-224 155-312 (359)
176 4a74_A DNA repair and recombin 97.6 0.00011 3.8E-09 73.1 8.3 27 77-103 21-47 (231)
177 1znw_A Guanylate kinase, GMP k 97.6 7.4E-06 2.5E-10 80.9 -0.5 25 77-101 16-40 (207)
178 3thx_A DNA mismatch repair pro 97.6 0.00013 4.3E-09 87.5 9.9 67 167-234 722-793 (934)
179 3ec2_A DNA replication protein 97.6 0.00013 4.4E-09 70.0 8.1 24 79-102 36-59 (180)
180 2eyu_A Twitching motility prot 97.6 9.2E-05 3.2E-09 75.9 7.2 53 174-233 88-140 (261)
181 3aez_A Pantothenate kinase; tr 97.5 6.9E-06 2.3E-10 86.6 -1.7 112 78-194 87-204 (312)
182 2kjq_A DNAA-related protein; s 97.5 0.00031 1.1E-08 65.4 9.3 23 80-102 35-57 (149)
183 1vma_A Cell division protein F 97.5 0.00025 8.7E-09 74.3 9.4 123 79-226 102-234 (306)
184 2cvh_A DNA repair and recombin 97.4 0.00022 7.4E-09 70.4 7.3 27 77-103 16-42 (220)
185 1tf7_A KAIC; homohexamer, hexa 97.4 0.00015 5.1E-09 82.1 6.8 143 73-227 30-186 (525)
186 1pzn_A RAD51, DNA repair and r 97.4 0.00021 7.2E-09 76.5 7.6 28 78-105 128-155 (349)
187 2i3b_A HCR-ntpase, human cance 97.4 0.00015 5E-09 70.6 5.5 48 166-214 83-135 (189)
188 2o8b_B DNA mismatch repair pro 97.3 0.00014 4.8E-09 88.1 6.0 123 81-228 789-914 (1022)
189 1rj9_A FTSY, signal recognitio 97.3 0.00013 4.5E-09 76.5 5.0 132 80-226 101-258 (304)
190 3kl4_A SRP54, signal recogniti 97.3 0.00084 2.9E-08 73.5 11.1 124 81-226 97-223 (433)
191 2px0_A Flagellar biosynthesis 97.2 0.00095 3.3E-08 69.6 9.7 130 80-236 104-237 (296)
192 1wb9_A DNA mismatch repair pro 97.1 0.00095 3.3E-08 78.9 9.9 54 181-235 683-739 (800)
193 2b8t_A Thymidine kinase; deoxy 97.1 0.0014 4.8E-08 65.3 9.1 117 79-226 10-126 (223)
194 3e1s_A Exodeoxyribonuclease V, 97.1 0.00062 2.1E-08 77.7 7.2 37 66-102 189-225 (574)
195 3lda_A DNA repair protein RAD5 97.1 0.0011 3.9E-08 71.9 8.9 28 79-106 176-203 (400)
196 1n0w_A DNA repair protein RAD5 97.1 0.0013 4.4E-08 65.8 8.8 28 77-104 20-47 (243)
197 1ewq_A DNA mismatch repair pro 97.1 0.0008 2.7E-08 79.0 8.1 61 167-229 636-701 (765)
198 3dm5_A SRP54, signal recogniti 97.0 0.003 1E-07 69.2 12.0 124 81-226 100-224 (443)
199 2ewv_A Twitching motility prot 97.0 0.0024 8.1E-08 68.8 10.6 120 78-234 133-252 (372)
200 2dr3_A UPF0273 protein PH0284; 97.0 0.0017 6E-08 64.9 8.9 28 78-105 20-47 (247)
201 2orw_A Thymidine kinase; TMTK, 96.9 0.0023 7.8E-08 61.8 8.1 25 80-104 2-26 (184)
202 1ls1_A Signal recognition part 96.8 0.0036 1.2E-07 65.1 10.1 126 80-226 97-222 (295)
203 1f2t_B RAD50 ABC-ATPase; DNA d 96.8 0.0011 3.6E-08 61.8 4.7 65 161-227 52-124 (148)
204 3e70_C DPA, signal recognition 96.8 0.0045 1.5E-07 65.4 10.1 24 79-102 127-150 (328)
205 3h4m_A Proteasome-activating n 96.5 0.0054 1.9E-07 63.0 8.8 57 44-102 14-72 (285)
206 2jeo_A Uridine-cytidine kinase 96.5 0.0008 2.7E-08 68.0 2.2 115 77-194 21-143 (245)
207 3upu_A ATP-dependent DNA helic 96.4 0.003 1E-07 70.0 6.3 39 63-101 22-65 (459)
208 3te6_A Regulatory protein SIR3 96.4 0.014 4.9E-07 61.2 10.8 44 183-227 131-174 (318)
209 2yhs_A FTSY, cell division pro 96.3 0.014 4.6E-07 64.7 10.6 24 79-102 291-314 (503)
210 1njg_A DNA polymerase III subu 96.3 0.0092 3.1E-07 58.7 8.4 30 73-102 34-66 (250)
211 2r6a_A DNAB helicase, replicat 96.2 0.007 2.4E-07 67.0 7.6 37 69-105 191-227 (454)
212 1xx6_A Thymidine kinase; NESG, 96.1 0.0091 3.1E-07 57.9 7.3 26 79-104 6-31 (191)
213 3bos_A Putative DNA replicatio 96.1 0.029 1E-06 55.4 11.0 23 80-102 51-73 (242)
214 1fnn_A CDC6P, cell division co 96.1 0.017 5.9E-07 61.8 9.9 20 83-102 46-65 (389)
215 2zr9_A Protein RECA, recombina 96.0 0.02 6.7E-07 61.0 9.9 29 77-105 57-85 (349)
216 1sxj_E Activator 1 40 kDa subu 96.0 0.016 5.5E-07 61.4 9.1 44 182-227 132-175 (354)
217 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.0037 1.3E-07 67.2 3.9 65 162-228 275-347 (365)
218 3szr_A Interferon-induced GTP- 96.0 0.0024 8.3E-08 73.3 2.6 46 182-227 144-197 (608)
219 4a1f_A DNAB helicase, replicat 95.9 0.015 5.1E-07 61.5 8.3 128 69-222 34-162 (338)
220 3n70_A Transport activator; si 95.8 0.019 6.5E-07 52.7 7.7 30 74-103 17-46 (145)
221 3b9p_A CG5977-PA, isoform A; A 95.8 0.029 9.9E-07 57.9 9.9 23 80-102 53-75 (297)
222 2zts_A Putative uncharacterize 95.8 0.029 1E-06 55.9 9.4 28 78-105 27-54 (251)
223 1jr3_A DNA polymerase III subu 95.7 0.031 1E-06 59.5 10.0 20 82-101 39-58 (373)
224 1zu4_A FTSY; GTPase, signal re 95.7 0.039 1.3E-06 57.9 10.5 23 79-101 103-125 (320)
225 1htw_A HI0065; nucleotide-bind 95.7 0.0036 1.2E-07 58.8 2.2 24 78-101 30-53 (158)
226 3tr0_A Guanylate kinase, GMP k 95.7 0.0043 1.5E-07 60.3 2.9 24 78-101 4-27 (205)
227 2j9r_A Thymidine kinase; TK1, 95.7 0.02 6.8E-07 56.3 7.5 27 79-105 26-52 (214)
228 4b4t_H 26S protease regulatory 95.7 0.037 1.3E-06 60.6 10.3 64 36-101 198-263 (467)
229 3pih_A Uvrabc system protein A 95.7 0.008 2.7E-07 71.7 5.4 66 161-228 459-528 (916)
230 3kta_B Chromosome segregation 95.6 0.02 6.7E-07 54.6 7.0 64 161-227 59-128 (173)
231 2chg_A Replication factor C sm 95.6 0.067 2.3E-06 51.7 11.2 20 83-102 40-59 (226)
232 3hr8_A Protein RECA; alpha and 95.5 0.044 1.5E-06 58.3 10.2 28 77-104 57-84 (356)
233 1z6g_A Guanylate kinase; struc 95.5 0.0047 1.6E-07 61.2 2.3 26 77-102 19-44 (218)
234 2v1u_A Cell division control p 95.5 0.043 1.5E-06 58.4 10.2 24 79-102 42-65 (387)
235 2qby_A CDC6 homolog 1, cell di 95.5 0.025 8.6E-07 60.2 8.3 23 80-102 44-66 (386)
236 3qkt_A DNA double-strand break 95.5 0.01 3.5E-07 63.0 5.1 65 161-227 243-315 (339)
237 2qen_A Walker-type ATPase; unk 95.5 0.06 2.1E-06 56.4 11.0 31 72-102 22-52 (350)
238 2r6f_A Excinuclease ABC subuni 95.5 0.014 4.9E-07 69.4 6.5 67 160-228 498-568 (972)
239 2orv_A Thymidine kinase; TP4A 95.5 0.035 1.2E-06 55.1 8.3 27 79-105 17-43 (234)
240 2ygr_A Uvrabc system protein A 95.4 0.016 5.5E-07 69.2 6.7 67 160-228 515-585 (993)
241 2vf7_A UVRA2, excinuclease ABC 95.4 0.015 5.3E-07 68.7 6.3 67 160-228 373-443 (842)
242 4b4t_J 26S protease regulatory 95.3 0.053 1.8E-06 58.5 9.9 60 41-102 142-203 (405)
243 1s96_A Guanylate kinase, GMP k 95.3 0.0072 2.5E-07 60.0 3.0 26 77-102 12-37 (219)
244 1lvg_A Guanylate kinase, GMP k 95.3 0.006 2E-07 59.4 2.2 24 79-102 2-25 (198)
245 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.028 9.7E-07 56.6 7.3 24 79-102 37-60 (262)
246 1kgd_A CASK, peripheral plasma 95.3 0.0081 2.8E-07 57.4 3.0 24 79-102 3-26 (180)
247 1zp6_A Hypothetical protein AT 95.2 0.0066 2.3E-07 58.2 2.1 26 77-102 5-30 (191)
248 3lnc_A Guanylate kinase, GMP k 95.2 0.0074 2.5E-07 60.1 2.5 26 77-102 23-48 (231)
249 2qby_B CDC6 homolog 3, cell di 95.1 0.047 1.6E-06 58.3 8.8 22 81-102 45-66 (384)
250 3e2i_A Thymidine kinase; Zn-bi 95.1 0.05 1.7E-06 53.4 8.0 25 79-103 26-50 (219)
251 4b4t_I 26S protease regulatory 95.1 0.051 1.8E-06 58.9 8.8 68 35-102 170-237 (437)
252 4a15_A XPD helicase, ATP-depen 95.1 0.01 3.6E-07 68.2 3.6 69 68-139 5-77 (620)
253 1j8m_F SRP54, signal recogniti 95.0 0.081 2.8E-06 54.9 10.1 125 81-226 98-224 (297)
254 2zpa_A Uncharacterized protein 95.0 0.057 1.9E-06 61.9 9.4 113 66-227 175-289 (671)
255 2ffh_A Protein (FFH); SRP54, s 95.0 0.09 3.1E-06 57.3 10.6 22 80-101 97-118 (425)
256 1w4r_A Thymidine kinase; type 95.0 0.038 1.3E-06 53.4 6.7 40 182-227 89-128 (195)
257 4a15_A XPD helicase, ATP-depen 95.0 0.04 1.4E-06 63.3 8.2 176 216-415 375-581 (620)
258 3a00_A Guanylate kinase, GMP k 94.9 0.0092 3.1E-07 57.3 2.3 22 81-102 1-22 (186)
259 3syl_A Protein CBBX; photosynt 94.9 0.11 3.6E-06 53.8 10.6 21 80-100 66-86 (309)
260 2j41_A Guanylate kinase; GMP, 94.8 0.012 4.1E-07 57.1 2.9 25 78-102 3-27 (207)
261 4b4t_L 26S protease subunit RP 94.8 0.06 2E-06 58.9 8.5 61 40-102 174-236 (437)
262 1udx_A The GTP-binding protein 94.8 0.012 4.3E-07 64.0 3.1 61 162-226 248-308 (416)
263 3c8u_A Fructokinase; YP_612366 94.8 0.01 3.6E-07 58.0 2.2 24 78-101 19-42 (208)
264 4b4t_M 26S protease regulatory 94.7 0.046 1.6E-06 59.7 7.5 65 36-102 170-236 (434)
265 1v5w_A DMC1, meiotic recombina 94.7 0.066 2.3E-06 56.7 8.5 28 78-105 119-146 (343)
266 2v3c_C SRP54, signal recogniti 94.7 0.023 7.7E-07 62.3 5.0 21 82-102 100-120 (432)
267 4ad8_A DNA repair protein RECN 94.7 0.024 8.2E-07 63.8 5.3 63 164-229 394-461 (517)
268 3bh0_A DNAB-like replicative h 94.7 0.047 1.6E-06 57.2 7.2 122 69-214 56-178 (315)
269 3k1j_A LON protease, ATP-depen 94.6 0.058 2E-06 61.8 8.4 34 69-102 48-81 (604)
270 2ce7_A Cell division protein F 94.6 0.045 1.5E-06 60.6 7.2 21 82-102 50-70 (476)
271 1l8q_A Chromosomal replication 94.6 0.13 4.4E-06 53.8 10.4 23 80-102 36-58 (324)
272 2gza_A Type IV secretion syste 94.6 0.012 4.2E-07 62.9 2.4 30 73-102 167-196 (361)
273 4b4t_K 26S protease regulatory 94.6 0.11 3.8E-06 56.6 9.9 62 39-102 164-227 (428)
274 2z4s_A Chromosomal replication 94.5 0.039 1.3E-06 60.7 6.4 40 184-225 194-236 (440)
275 2v9p_A Replication protein E1; 94.5 0.022 7.6E-07 59.3 4.1 30 72-101 117-146 (305)
276 3tau_A Guanylate kinase, GMP k 94.4 0.017 5.9E-07 56.5 2.9 24 79-102 6-29 (208)
277 1d2n_A N-ethylmaleimide-sensit 94.4 0.079 2.7E-06 53.9 8.0 22 81-102 64-85 (272)
278 2z43_A DNA repair and recombin 94.4 0.081 2.8E-06 55.5 8.1 29 77-105 103-131 (324)
279 3asz_A Uridine kinase; cytidin 94.3 0.016 5.4E-07 56.6 2.3 23 79-101 4-26 (211)
280 3cpe_A Terminase, DNA packagin 94.3 0.17 5.9E-06 57.7 11.4 68 66-138 163-230 (592)
281 1a5t_A Delta prime, HOLB; zinc 94.3 0.25 8.6E-06 51.9 11.7 29 73-101 13-44 (334)
282 1sxj_D Activator 1 41 kDa subu 94.2 0.06 2E-06 56.8 6.8 29 73-101 48-78 (353)
283 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.065 2.2E-06 56.3 6.8 58 44-103 9-67 (322)
284 1iqp_A RFCS; clamp loader, ext 94.1 0.11 3.9E-06 53.8 8.7 20 83-102 48-67 (327)
285 3vfd_A Spastin; ATPase, microt 94.1 0.19 6.6E-06 54.0 10.6 23 80-102 147-169 (389)
286 4eun_A Thermoresistant glucoki 94.1 0.022 7.6E-07 55.2 2.8 23 79-101 27-49 (200)
287 1u94_A RECA protein, recombina 94.0 0.16 5.4E-06 54.1 9.5 28 78-105 60-87 (356)
288 3ney_A 55 kDa erythrocyte memb 94.0 0.026 8.8E-07 54.9 3.0 24 79-102 17-40 (197)
289 2oap_1 GSPE-2, type II secreti 93.9 0.028 9.6E-07 63.0 3.7 42 60-102 240-281 (511)
290 1sxj_A Activator 1 95 kDa subu 93.9 0.13 4.5E-06 57.7 9.1 22 81-102 77-98 (516)
291 2fna_A Conserved hypothetical 93.9 0.22 7.7E-06 52.0 10.4 21 82-102 31-51 (357)
292 3d8b_A Fidgetin-like protein 1 93.8 0.15 5E-06 54.3 9.0 23 80-102 116-138 (357)
293 3eie_A Vacuolar protein sortin 93.7 0.047 1.6E-06 57.3 4.7 58 44-102 15-72 (322)
294 3u61_B DNA polymerase accessor 93.7 0.28 9.4E-06 51.1 10.7 21 82-102 49-69 (324)
295 2o0j_A Terminase, DNA packagin 93.7 0.44 1.5E-05 51.1 12.2 68 65-137 162-229 (385)
296 2j37_W Signal recognition part 93.6 0.26 8.8E-06 54.9 10.7 123 82-226 102-225 (504)
297 2bdt_A BH3686; alpha-beta prot 93.6 0.022 7.6E-07 54.5 1.8 22 81-102 2-23 (189)
298 3pfi_A Holliday junction ATP-d 93.5 0.25 8.6E-06 51.7 10.0 20 82-101 56-75 (338)
299 1xp8_A RECA protein, recombina 93.5 0.31 1E-05 52.1 10.6 29 77-105 70-98 (366)
300 2q6t_A DNAB replication FORK h 93.5 0.22 7.4E-06 54.7 9.7 127 70-222 189-316 (444)
301 1g5t_A COB(I)alamin adenosyltr 93.3 0.17 5.9E-06 48.9 7.6 43 183-229 119-166 (196)
302 3uk6_A RUVB-like 2; hexameric 93.3 0.2 6.8E-06 53.1 8.9 22 81-102 70-91 (368)
303 2qp9_X Vacuolar protein sortin 93.2 0.15 5E-06 54.3 7.6 22 81-102 84-105 (355)
304 1p9r_A General secretion pathw 93.2 0.031 1.1E-06 60.9 2.3 24 79-102 165-188 (418)
305 1knq_A Gluconate kinase; ALFA/ 93.1 0.035 1.2E-06 52.3 2.2 22 80-101 7-28 (175)
306 2xxa_A Signal recognition part 93.1 0.37 1.3E-05 52.6 10.7 123 82-225 101-224 (433)
307 4b3f_X DNA-binding protein smu 93.0 0.071 2.4E-06 61.6 5.1 65 67-138 190-255 (646)
308 1hqc_A RUVB; extended AAA-ATPa 93.0 0.23 7.9E-06 51.5 8.6 22 81-102 38-59 (324)
309 3uie_A Adenylyl-sulfate kinase 93.0 0.037 1.3E-06 53.6 2.2 24 78-101 22-45 (200)
310 2bbw_A Adenylate kinase 4, AK4 92.8 0.048 1.6E-06 54.7 2.9 23 80-102 26-48 (246)
311 1kag_A SKI, shikimate kinase I 92.8 0.04 1.4E-06 51.7 2.2 22 80-101 3-24 (173)
312 3vaa_A Shikimate kinase, SK; s 92.7 0.051 1.7E-06 52.6 2.8 24 78-101 22-45 (199)
313 3kta_A Chromosome segregation 92.5 0.053 1.8E-06 51.4 2.6 19 83-101 28-46 (182)
314 2vp4_A Deoxynucleoside kinase; 92.4 0.042 1.4E-06 54.6 1.9 23 79-101 18-40 (230)
315 2obl_A ESCN; ATPase, hydrolase 92.4 0.05 1.7E-06 57.8 2.5 27 76-102 66-92 (347)
316 2qag_B Septin-6, protein NEDD5 92.4 0.048 1.6E-06 59.3 2.4 29 74-102 33-63 (427)
317 1w5s_A Origin recognition comp 92.3 0.3 1E-05 52.4 8.6 23 80-102 49-73 (412)
318 2qor_A Guanylate kinase; phosp 92.3 0.05 1.7E-06 52.8 2.2 26 77-102 8-33 (204)
319 1sq5_A Pantothenate kinase; P- 92.1 0.091 3.1E-06 54.7 4.0 23 79-101 78-100 (308)
320 3tqc_A Pantothenate kinase; bi 92.0 0.11 3.7E-06 54.5 4.5 28 74-101 79-112 (321)
321 2x8a_A Nuclear valosin-contain 91.9 0.059 2E-06 55.2 2.3 57 44-102 7-65 (274)
322 4e22_A Cytidylate kinase; P-lo 91.9 0.07 2.4E-06 53.9 2.8 24 79-102 25-48 (252)
323 3vkw_A Replicase large subunit 91.9 0.37 1.3E-05 52.6 8.6 24 79-102 159-182 (446)
324 2qt1_A Nicotinamide riboside k 91.9 0.044 1.5E-06 53.3 1.2 28 74-101 14-41 (207)
325 2gno_A DNA polymerase III, gam 91.9 0.42 1.4E-05 49.6 8.8 45 178-225 76-120 (305)
326 2f1r_A Molybdopterin-guanine d 91.8 0.054 1.9E-06 51.3 1.7 20 82-101 3-22 (171)
327 3hu3_A Transitional endoplasmi 91.8 0.46 1.6E-05 52.8 9.5 24 79-102 236-259 (489)
328 1lw7_A Transcriptional regulat 91.6 0.071 2.4E-06 57.0 2.6 26 76-101 163-190 (365)
329 2yv5_A YJEQ protein; hydrolase 91.6 0.11 3.7E-06 54.0 3.9 26 77-102 161-186 (302)
330 2qm8_A GTPase/ATPase; G protei 91.5 0.08 2.8E-06 56.0 2.8 26 77-102 51-76 (337)
331 2rcn_A Probable GTPase ENGC; Y 91.4 0.1 3.4E-06 55.6 3.5 25 78-102 212-236 (358)
332 2dpy_A FLII, flagellum-specifi 91.3 0.081 2.8E-06 58.0 2.7 27 76-102 152-178 (438)
333 1rz3_A Hypothetical protein rb 91.2 0.081 2.8E-06 51.3 2.3 23 79-101 20-42 (201)
334 1pui_A ENGB, probable GTP-bind 91.0 0.068 2.3E-06 51.7 1.5 24 78-101 23-46 (210)
335 2gk6_A Regulator of nonsense t 91.0 0.18 6E-06 58.0 5.2 66 67-138 181-246 (624)
336 1cke_A CK, MSSA, protein (cyti 90.9 0.1 3.5E-06 51.2 2.7 21 81-101 5-25 (227)
337 1w1w_A Structural maintenance 90.7 0.23 7.9E-06 54.2 5.7 62 163-226 330-397 (430)
338 3cf0_A Transitional endoplasmi 90.7 0.13 4.3E-06 53.4 3.4 58 44-102 12-70 (301)
339 2pez_A Bifunctional 3'-phospho 90.7 0.096 3.3E-06 49.5 2.3 22 80-101 4-25 (179)
340 1jbk_A CLPB protein; beta barr 90.6 0.21 7E-06 46.8 4.5 23 80-102 42-64 (195)
341 1m7g_A Adenylylsulfate kinase; 90.5 0.15 5.2E-06 49.6 3.6 33 68-101 13-45 (211)
342 3euj_A Chromosome partition pr 90.4 0.11 3.6E-06 57.6 2.6 23 78-101 27-49 (483)
343 3co5_A Putative two-component 90.4 0.12 4.1E-06 47.1 2.5 25 76-100 22-46 (143)
344 3bgw_A DNAB-like replicative h 90.3 0.38 1.3E-05 52.7 7.0 38 69-106 185-222 (444)
345 3cr8_A Sulfate adenylyltranfer 90.3 0.11 3.9E-06 58.5 2.7 25 77-101 365-389 (552)
346 1kht_A Adenylate kinase; phosp 90.3 0.13 4.4E-06 48.8 2.7 22 80-101 2-23 (192)
347 1u0l_A Probable GTPase ENGC; p 90.2 0.14 4.9E-06 53.1 3.3 26 77-102 165-190 (301)
348 3cm0_A Adenylate kinase; ATP-b 90.2 0.095 3.3E-06 49.7 1.8 22 80-101 3-24 (186)
349 1f2t_A RAD50 ABC-ATPase; DNA d 90.1 0.14 4.8E-06 47.2 2.7 20 82-101 24-43 (149)
350 1t9h_A YLOQ, probable GTPase E 90.0 0.085 2.9E-06 54.9 1.3 25 77-101 169-193 (307)
351 3lw7_A Adenylate kinase relate 90.0 0.13 4.3E-06 47.8 2.4 20 82-101 2-21 (179)
352 2w58_A DNAI, primosome compone 89.9 0.23 7.9E-06 47.7 4.3 21 82-102 55-75 (202)
353 1q57_A DNA primase/helicase; d 89.9 1.1 3.9E-05 49.7 10.6 38 69-106 230-267 (503)
354 1nij_A Hypothetical protein YJ 89.9 0.1 3.4E-06 54.7 1.8 21 82-102 5-25 (318)
355 1in4_A RUVB, holliday junction 89.8 0.15 5E-06 53.8 3.0 21 82-102 52-72 (334)
356 3kb2_A SPBC2 prophage-derived 89.8 0.14 4.9E-06 47.6 2.6 19 83-101 3-21 (173)
357 1qhx_A CPT, protein (chloramph 89.7 0.16 5.3E-06 47.7 2.8 21 81-101 3-23 (178)
358 3qf7_A RAD50; ABC-ATPase, ATPa 89.5 0.13 4.3E-06 55.1 2.2 21 80-101 23-43 (365)
359 3pxi_A Negative regulator of g 89.5 0.98 3.4E-05 53.0 10.0 19 83-101 523-541 (758)
360 1jjv_A Dephospho-COA kinase; P 89.4 0.14 4.9E-06 49.4 2.4 19 83-101 4-22 (206)
361 3umf_A Adenylate kinase; rossm 89.4 0.14 4.8E-06 50.4 2.3 25 77-101 25-49 (217)
362 1ex7_A Guanylate kinase; subst 89.2 0.15 5.2E-06 48.9 2.3 22 82-103 2-23 (186)
363 3iij_A Coilin-interacting nucl 89.2 0.12 4E-06 48.9 1.5 23 79-101 9-31 (180)
364 2p65_A Hypothetical protein PF 89.2 0.27 9.3E-06 45.9 4.1 22 81-102 43-64 (187)
365 2wjy_A Regulator of nonsense t 89.1 0.3 1E-05 57.7 5.2 66 67-138 357-422 (800)
366 1svm_A Large T antigen; AAA+ f 89.1 0.21 7E-06 53.6 3.5 26 77-102 165-190 (377)
367 2yvu_A Probable adenylyl-sulfa 89.1 0.16 5.3E-06 48.3 2.3 23 79-101 11-33 (186)
368 3trf_A Shikimate kinase, SK; a 89.0 0.18 6.2E-06 47.7 2.7 21 81-101 5-25 (185)
369 1oix_A RAS-related protein RAB 89.0 0.17 5.9E-06 48.3 2.5 22 83-104 31-52 (191)
370 2v54_A DTMP kinase, thymidylat 88.9 0.18 6.1E-06 48.5 2.6 22 80-101 3-24 (204)
371 3auy_A DNA double-strand break 88.9 0.43 1.5E-05 51.0 5.9 62 163-227 277-347 (371)
372 2rhm_A Putative kinase; P-loop 88.9 0.15 5.1E-06 48.5 2.0 22 80-101 4-25 (193)
373 2xzl_A ATP-dependent helicase 88.8 0.27 9.4E-06 58.1 4.6 66 67-138 361-426 (802)
374 1ly1_A Polynucleotide kinase; 88.8 0.18 6E-06 47.3 2.5 21 82-102 3-23 (181)
375 2if2_A Dephospho-COA kinase; a 88.8 0.17 5.8E-06 48.8 2.4 20 83-102 3-22 (204)
376 3t61_A Gluconokinase; PSI-biol 88.8 0.15 5.2E-06 49.2 2.0 21 81-101 18-38 (202)
377 2c95_A Adenylate kinase 1; tra 88.8 0.2 6.8E-06 47.7 2.8 24 78-101 6-29 (196)
378 3nwj_A ATSK2; P loop, shikimat 88.7 0.2 6.7E-06 50.6 2.8 21 81-101 48-68 (250)
379 2o5v_A DNA replication and rep 88.6 0.28 9.6E-06 52.2 4.0 49 162-210 260-320 (359)
380 2bwj_A Adenylate kinase 5; pho 88.6 0.2 6.7E-06 47.9 2.6 24 78-101 9-32 (199)
381 2f9l_A RAB11B, member RAS onco 88.6 0.18 6.1E-06 48.4 2.3 22 83-104 7-28 (199)
382 2ze6_A Isopentenyl transferase 88.4 0.19 6.4E-06 50.7 2.5 19 83-101 3-21 (253)
383 4eaq_A DTMP kinase, thymidylat 88.4 0.17 5.7E-06 50.3 2.1 24 78-101 23-46 (229)
384 1np6_A Molybdopterin-guanine d 88.3 0.22 7.6E-06 47.2 2.7 21 82-102 7-27 (174)
385 1odf_A YGR205W, hypothetical 3 88.3 0.19 6.5E-06 51.9 2.5 21 80-100 30-50 (290)
386 1y63_A LMAJ004144AAA protein; 88.3 0.22 7.4E-06 47.4 2.7 23 79-101 8-30 (184)
387 2qmh_A HPR kinase/phosphorylas 88.1 0.2 6.9E-06 48.5 2.3 25 80-104 33-57 (205)
388 1sxj_C Activator 1 40 kDa subu 88.0 0.3 1E-05 51.3 3.9 28 74-101 37-66 (340)
389 3exa_A TRNA delta(2)-isopenten 87.9 0.21 7.1E-06 52.0 2.4 22 81-102 3-24 (322)
390 3a8t_A Adenylate isopentenyltr 87.9 0.2 6.7E-06 52.7 2.2 22 80-101 39-60 (339)
391 1tev_A UMP-CMP kinase; ploop, 87.7 0.21 7.2E-06 47.4 2.3 21 81-101 3-23 (196)
392 3cmw_A Protein RECA, recombina 87.7 1.1 3.9E-05 56.6 9.3 28 78-105 729-756 (1706)
393 1zd8_A GTP:AMP phosphotransfer 87.7 0.24 8.2E-06 48.8 2.7 24 79-102 5-28 (227)
394 3cmw_A Protein RECA, recombina 87.6 1.1 3.8E-05 56.7 9.1 29 78-106 380-408 (1706)
395 3cf2_A TER ATPase, transitiona 87.5 0.52 1.8E-05 55.4 5.8 22 81-102 238-259 (806)
396 1w1w_A Structural maintenance 87.4 0.25 8.7E-06 53.9 2.9 24 79-102 24-47 (430)
397 2plr_A DTMP kinase, probable t 87.3 0.24 8.1E-06 47.8 2.3 22 80-101 3-24 (213)
398 2jaq_A Deoxyguanosine kinase; 87.2 0.25 8.5E-06 47.3 2.4 19 83-101 2-20 (205)
399 1gvn_B Zeta; postsegregational 87.1 0.23 7.9E-06 51.1 2.3 23 80-102 32-54 (287)
400 3sr0_A Adenylate kinase; phosp 87.1 0.25 8.7E-06 48.2 2.4 20 83-102 2-21 (206)
401 1xjc_A MOBB protein homolog; s 86.9 0.31 1E-05 46.0 2.8 21 82-102 5-25 (169)
402 2wwf_A Thymidilate kinase, put 86.9 0.28 9.6E-06 47.4 2.6 23 79-101 8-30 (212)
403 3qkt_A DNA double-strand break 86.8 0.21 7.3E-06 52.6 1.8 21 81-101 23-43 (339)
404 1ixz_A ATP-dependent metallopr 86.8 0.26 9E-06 49.3 2.4 20 83-102 51-70 (254)
405 3qks_A DNA double-strand break 86.8 0.3 1E-05 47.4 2.7 19 82-100 24-42 (203)
406 3cmu_A Protein RECA, recombina 86.7 1.5 5E-05 56.4 9.5 35 72-106 1070-1106(2050)
407 1nks_A Adenylate kinase; therm 86.7 0.27 9.3E-06 46.5 2.3 19 83-101 3-21 (194)
408 2o5v_A DNA replication and rep 86.6 0.25 8.5E-06 52.6 2.2 44 318-372 301-344 (359)
409 3cf2_A TER ATPase, transitiona 86.6 0.67 2.3E-05 54.5 6.0 60 43-103 473-533 (806)
410 2gj8_A MNME, tRNA modification 86.5 0.28 9.5E-06 45.9 2.3 24 80-103 3-26 (172)
411 1zuh_A Shikimate kinase; alpha 86.4 0.26 8.9E-06 45.8 2.0 20 82-101 8-27 (168)
412 1aky_A Adenylate kinase; ATP:A 86.4 0.33 1.1E-05 47.5 2.8 22 80-101 3-24 (220)
413 2vli_A Antibiotic resistance p 86.4 0.27 9.3E-06 46.2 2.2 22 80-101 4-25 (183)
414 3tlx_A Adenylate kinase 2; str 86.4 0.41 1.4E-05 47.8 3.6 24 79-102 27-50 (243)
415 1gtv_A TMK, thymidylate kinase 86.4 0.19 6.4E-06 48.7 1.0 19 83-101 2-20 (214)
416 1nn5_A Similar to deoxythymidy 86.3 0.32 1.1E-05 47.0 2.6 23 79-101 7-29 (215)
417 2wji_A Ferrous iron transport 86.0 0.34 1.1E-05 44.8 2.6 20 83-102 5-24 (165)
418 2z0h_A DTMP kinase, thymidylat 86.0 0.31 1.1E-05 46.3 2.4 19 83-101 2-20 (197)
419 3cmu_A Protein RECA, recombina 85.9 2 7E-05 55.1 10.2 29 78-106 380-408 (2050)
420 3fb4_A Adenylate kinase; psych 85.6 0.34 1.2E-05 47.1 2.4 19 83-101 2-20 (216)
421 3foz_A TRNA delta(2)-isopenten 85.5 0.33 1.1E-05 50.3 2.4 22 81-102 10-31 (316)
422 2www_A Methylmalonic aciduria 85.4 0.33 1.1E-05 51.4 2.4 22 81-102 74-95 (349)
423 1vht_A Dephospho-COA kinase; s 85.4 0.33 1.1E-05 47.3 2.3 21 81-101 4-24 (218)
424 2p5t_B PEZT; postsegregational 85.3 0.27 9.3E-06 49.4 1.6 23 79-101 30-52 (253)
425 1zak_A Adenylate kinase; ATP:A 85.2 0.32 1.1E-05 47.7 2.0 21 81-101 5-25 (222)
426 1qvr_A CLPB protein; coiled co 85.2 1.4 4.8E-05 52.5 8.0 30 72-101 180-211 (854)
427 2cdn_A Adenylate kinase; phosp 85.2 0.41 1.4E-05 46.0 2.8 22 80-101 19-40 (201)
428 1iy2_A ATP-dependent metallopr 85.2 0.35 1.2E-05 49.2 2.4 20 83-102 75-94 (278)
429 1qf9_A UMP/CMP kinase, protein 84.9 0.37 1.3E-05 45.5 2.3 20 82-101 7-26 (194)
430 1lv7_A FTSH; alpha/beta domain 84.9 0.59 2E-05 46.8 3.9 22 81-102 45-66 (257)
431 3dl0_A Adenylate kinase; phosp 84.8 0.38 1.3E-05 46.7 2.4 19 83-101 2-20 (216)
432 2pbr_A DTMP kinase, thymidylat 84.6 0.4 1.4E-05 45.4 2.4 19 83-101 2-20 (195)
433 2zej_A Dardarin, leucine-rich 84.6 0.36 1.2E-05 45.5 2.1 20 83-102 4-23 (184)
434 1via_A Shikimate kinase; struc 84.5 0.36 1.2E-05 45.2 2.0 19 83-101 6-24 (175)
435 2wjg_A FEOB, ferrous iron tran 84.3 0.45 1.5E-05 44.7 2.6 20 83-102 9-28 (188)
436 3hws_A ATP-dependent CLP prote 84.2 1.2 4E-05 47.2 6.1 23 80-102 50-72 (363)
437 2r44_A Uncharacterized protein 84.2 0.51 1.7E-05 49.3 3.2 34 68-101 33-66 (331)
438 1ukz_A Uridylate kinase; trans 84.2 0.43 1.5E-05 45.8 2.4 22 81-102 15-36 (203)
439 1ofh_A ATP-dependent HSL prote 84.2 1.2 4.2E-05 45.4 6.1 22 81-102 50-71 (310)
440 3auy_A DNA double-strand break 84.1 0.33 1.1E-05 51.9 1.7 20 82-101 26-45 (371)
441 2qgz_A Helicase loader, putati 84.1 0.61 2.1E-05 48.4 3.7 21 81-101 152-172 (308)
442 1q3t_A Cytidylate kinase; nucl 84.1 0.47 1.6E-05 47.0 2.7 23 79-101 14-36 (236)
443 2bjv_A PSP operon transcriptio 84.0 0.6 2.1E-05 46.9 3.5 26 78-103 26-51 (265)
444 3a4m_A L-seryl-tRNA(SEC) kinas 83.9 0.42 1.4E-05 48.2 2.3 21 81-101 4-24 (260)
445 1e6c_A Shikimate kinase; phosp 83.9 0.4 1.4E-05 44.5 2.0 20 82-101 3-22 (173)
446 3d3q_A TRNA delta(2)-isopenten 83.8 0.45 1.6E-05 50.0 2.6 20 82-101 8-27 (340)
447 2pt5_A Shikimate kinase, SK; a 83.8 0.47 1.6E-05 43.9 2.4 19 83-101 2-20 (168)
448 2qnr_A Septin-2, protein NEDD5 83.8 0.36 1.2E-05 50.0 1.8 19 84-102 21-39 (301)
449 1uf9_A TT1252 protein; P-loop, 83.7 0.45 1.5E-05 45.5 2.3 22 81-102 8-29 (203)
450 2p67_A LAO/AO transport system 83.7 0.5 1.7E-05 49.9 2.9 26 77-102 52-77 (341)
451 2xb4_A Adenylate kinase; ATP-b 83.5 0.47 1.6E-05 46.6 2.4 19 83-101 2-20 (223)
452 4fcw_A Chaperone protein CLPB; 83.4 0.56 1.9E-05 48.2 3.1 20 82-101 48-67 (311)
453 2iyv_A Shikimate kinase, SK; t 83.4 0.41 1.4E-05 45.1 1.9 20 82-101 3-22 (184)
454 2dyk_A GTP-binding protein; GT 83.3 0.5 1.7E-05 42.9 2.4 22 83-104 3-24 (161)
455 3be4_A Adenylate kinase; malar 83.2 0.55 1.9E-05 45.8 2.8 21 81-101 5-25 (217)
456 1e4v_A Adenylate kinase; trans 83.1 0.48 1.7E-05 46.0 2.3 19 83-101 2-20 (214)
457 1ni3_A YCHF GTPase, YCHF GTP-b 83.1 0.53 1.8E-05 50.7 2.8 28 76-103 15-42 (392)
458 4tmk_A Protein (thymidylate ki 83.0 0.59 2E-05 45.8 2.9 22 80-101 2-23 (213)
459 1z2a_A RAS-related protein RAB 82.9 0.52 1.8E-05 43.0 2.3 22 83-104 7-28 (168)
460 3crm_A TRNA delta(2)-isopenten 82.8 0.51 1.7E-05 49.3 2.4 20 82-101 6-25 (323)
461 2ce2_X GTPase HRAS; signaling 82.7 0.56 1.9E-05 42.5 2.5 22 83-104 5-26 (166)
462 4edh_A DTMP kinase, thymidylat 82.7 0.51 1.7E-05 46.2 2.3 23 79-101 4-26 (213)
463 3v9p_A DTMP kinase, thymidylat 82.6 0.51 1.7E-05 46.8 2.3 24 78-101 22-45 (227)
464 1ak2_A Adenylate kinase isoenz 82.6 0.6 2.1E-05 46.1 2.8 23 79-101 14-36 (233)
465 3lfu_A DNA helicase II; SF1 he 82.4 0.7 2.4E-05 53.0 3.7 33 66-100 9-41 (647)
466 2qag_C Septin-7; cell cycle, c 82.3 0.51 1.7E-05 51.3 2.3 19 84-102 34-52 (418)
467 1kao_A RAP2A; GTP-binding prot 82.3 0.58 2E-05 42.5 2.4 23 83-105 5-27 (167)
468 1tue_A Replication protein E1; 82.0 1.2 4.1E-05 43.3 4.6 48 53-100 28-77 (212)
469 2ged_A SR-beta, signal recogni 82.0 0.63 2.2E-05 43.9 2.6 25 80-104 47-71 (193)
470 1ky3_A GTP-binding protein YPT 81.9 0.6 2.1E-05 43.2 2.4 23 83-105 10-32 (182)
471 4ag6_A VIRB4 ATPase, type IV s 81.7 0.59 2E-05 50.2 2.5 25 80-104 34-58 (392)
472 1u8z_A RAS-related protein RAL 81.7 0.61 2.1E-05 42.4 2.3 23 83-105 6-28 (168)
473 1lkx_A Myosin IE heavy chain; 81.7 1.3 4.4E-05 51.1 5.4 60 41-100 46-113 (697)
474 2erx_A GTP-binding protein DI- 81.6 0.63 2.1E-05 42.6 2.4 21 83-103 5-25 (172)
475 3lv8_A DTMP kinase, thymidylat 81.6 0.66 2.3E-05 46.2 2.7 22 80-101 26-47 (236)
476 1ek0_A Protein (GTP-binding pr 81.6 0.62 2.1E-05 42.5 2.3 23 83-105 5-27 (170)
477 3lxx_A GTPase IMAP family memb 81.5 0.66 2.2E-05 45.9 2.6 21 83-103 31-51 (239)
478 1g16_A RAS-related protein SEC 81.4 0.61 2.1E-05 42.6 2.2 23 83-105 5-27 (170)
479 1z0j_A RAB-22, RAS-related pro 81.4 0.7 2.4E-05 42.2 2.6 23 83-105 8-30 (170)
480 2i1q_A DNA repair and recombin 81.4 0.51 1.7E-05 49.2 1.8 27 78-104 95-121 (322)
481 3m6a_A ATP-dependent protease 81.4 0.63 2.2E-05 52.4 2.7 22 80-101 107-128 (543)
482 1c1y_A RAS-related protein RAP 81.3 0.65 2.2E-05 42.3 2.3 22 83-104 5-26 (167)
483 3r20_A Cytidylate kinase; stru 81.2 0.72 2.5E-05 45.8 2.8 22 80-101 8-29 (233)
484 1wms_A RAB-9, RAB9, RAS-relate 81.1 0.67 2.3E-05 42.8 2.4 23 83-105 9-31 (177)
485 3tmk_A Thymidylate kinase; pho 81.1 0.73 2.5E-05 45.2 2.7 22 80-101 4-25 (216)
486 3hgt_A HDA1 complex subunit 3; 81.1 6.4 0.00022 40.9 9.9 108 278-423 124-241 (328)
487 1z08_A RAS-related protein RAB 81.1 0.67 2.3E-05 42.4 2.4 23 83-105 8-30 (170)
488 3nbx_X ATPase RAVA; AAA+ ATPas 81.0 0.9 3.1E-05 50.5 3.7 38 64-101 24-61 (500)
489 2grj_A Dephospho-COA kinase; T 80.9 0.57 1.9E-05 45.1 1.8 22 80-101 11-32 (192)
490 1qhl_A Protein (cell division 80.9 0.27 9.4E-06 48.7 -0.4 19 83-101 29-47 (227)
491 1svi_A GTP-binding protein YSX 80.8 0.66 2.3E-05 43.8 2.3 22 82-103 24-45 (195)
492 2lkc_A Translation initiation 80.8 0.85 2.9E-05 42.1 3.0 25 80-104 7-31 (178)
493 3pqc_A Probable GTP-binding pr 80.7 0.67 2.3E-05 43.5 2.3 22 83-104 25-46 (195)
494 2nzj_A GTP-binding protein REM 80.7 0.7 2.4E-05 42.5 2.4 20 83-102 6-25 (175)
495 3eph_A TRNA isopentenyltransfe 80.6 0.69 2.4E-05 49.7 2.5 20 82-101 3-22 (409)
496 2ius_A DNA translocase FTSK; n 80.6 0.67 2.3E-05 51.6 2.5 25 78-102 164-188 (512)
497 3q85_A GTP-binding protein REM 80.4 0.72 2.5E-05 42.2 2.3 20 83-102 4-23 (169)
498 1r2q_A RAS-related protein RAB 80.2 0.74 2.5E-05 42.0 2.3 23 83-105 8-30 (170)
499 2fn4_A P23, RAS-related protei 79.9 0.75 2.6E-05 42.5 2.3 22 83-104 11-32 (181)
500 3ake_A Cytidylate kinase; CMP 79.8 0.78 2.7E-05 43.9 2.4 19 83-101 4-22 (208)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1e-113 Score=1019.64 Aligned_cols=673 Identities=64% Similarity=1.051 Sum_probs=617.4
Q ss_pred CcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEE
Q 004850 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (727)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (727)
+.++++|+++++++.+.++++.++.+|++.+|.+|+.++..|++++++|||||||||+++++++... ... ..+..+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~-~~~---~~g~~i 143 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDE-MPH---LENTQV 143 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHH-CGG---GGTCEE
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhc-ccc---CCCceE
Confidence 4457889999999999999999999999999999999999999999999999999999998876533 111 113346
Q ss_pred EEcccchhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhh
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLA 199 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~ 199 (727)
++++|++..+.+++++++.+++..++..+||.++++.....++.|.++|+|++++.++.++.+.++++|||||+|+|+++
T Consensus 144 lvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA 223 (773)
T ss_dssp EEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH
T ss_pred EecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccc
Confidence 77889999999999999999999999999999888877777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCC
Q 004850 200 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPS 279 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~ 279 (727)
.+.++.+++.+...+++.++|+||||++.+.+++||.++|++.++|+.+|++++|...+..++....+..+.+++.....
T Consensus 224 ~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 303 (773)
T 2xau_A 224 TDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEA 303 (773)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCC
Confidence 99999999999988889999999999999999999999999999999999999999999889998888889888887788
Q ss_pred CCEEEecCCHHHHHHHHHHHHHHHhhc--CCCCCCeEEEEecCCCCHHHHhhhcCCCC-----CCCCCCCCCCcEEEEec
Q 004850 280 GDILVFLTGEEEIEDACRKITKEITNM--GDQVGPVKVVPLYSTLPPAMQQKIFEPAP-----PPSKEGGPPGRKIVVST 352 (727)
Q Consensus 280 g~iLVFl~~~~ei~~l~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~~~~~~~-----~g~~~~~~~~~kvlvaT 352 (727)
|++|||++|+++++.+++.|......+ .....++.+.++||+|++++|.++++.|+ +| .++|||||
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g-------~~kVlVAT 376 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP-------GRKVVIST 376 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC-------CEEEEEEC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC-------ceEEEEeC
Confidence 999999999999999999998643222 11124789999999999999999999999 77 89999999
Q ss_pred CccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcccCCCCCCCc
Q 004850 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPE 432 (727)
Q Consensus 353 niAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~~l~~~~~pe 432 (727)
|+||+|||||+|++|||+|++|.+.|||.+|++.|.+.|+|+++|.||+|||||.++|.||+||+++++...|.++..||
T Consensus 377 ~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pE 456 (773)
T 2xau_A 377 NIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPE 456 (773)
T ss_dssp THHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCG
T ss_pred cHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999955599999999
Q ss_pred ccccCchhhHHHHHHcCCCCcccccCCCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCC
Q 004850 433 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKY 512 (727)
Q Consensus 433 i~r~~l~~~~L~lk~~~~~~~~~~~~~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~ 512 (727)
|+|.+|.+++|+++++|+.++..|+|++||+++++..|++.|..+||||++|+||++|+.|+.||++|++||||+.|..+
T Consensus 457 i~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~ 536 (773)
T 2xau_A 457 ILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEF 536 (773)
T ss_dssp GGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGG
T ss_pred cccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---Cc-hhhHHhhcCChHHHHHH
Q 004850 513 NCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNN---ED-PSWCYDNFVNHRALKSA 588 (727)
Q Consensus 513 ~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~ 588 (727)
+|++++++|||+|+++++|..|.+.+++++.++..|.+..|||++++|+|++|.... .. ..||++||||+++|+++
T Consensus 537 ~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~ 616 (773)
T 2xau_A 537 QCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616 (773)
T ss_dssp TCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHH
T ss_pred CchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999889999999999999999999999999997653 33 78999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCCCcchHHHHHHHHHHhcccceEEEcCCCc-EEEeecCceEEECCCCCCCCCCcEEEE
Q 004850 589 DNVRQQLVRIMARFNLKLCSNDFNSRDYYVNIRKAMLAGYFMQVAHLERTGQ-YLTVKDNQVVHLHPSNCLDHKPEWVIY 667 (727)
Q Consensus 589 ~~i~~ql~~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~nva~~~~~~~-y~~~~~~~~~~ihpsS~l~~~~~~vvy 667 (727)
.++|.||.++|.+.+++..+...+..+++..|++|||+|||+|||++.++|. |.++.+|+.++|||+|++...|+||||
T Consensus 617 ~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~ 696 (773)
T 2xau_A 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIY 696 (773)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEE
Confidence 9999999999999998776554434456788999999999999999998775 999999999999999999767999999
Q ss_pred eeeccchhhhcccccccCHHHHHhhcCcccccccCCcchHHHHHHHHHHHHHHHhh
Q 004850 668 NEYVLTSRNFIRTVTDVRGEWLIDIAPHYYDLSNFPQCEAKRVLERLYRKREKERE 723 (727)
Q Consensus 668 ~e~~~t~~~~~~~~t~i~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (727)
+|++.|++.|||+||+|+|+||.+++|+||...+++.+++|+.|+++..+.+.++.
T Consensus 697 ~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (773)
T 2xau_A 697 NEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNE 752 (773)
T ss_dssp EEEEESSSEEEEEEEECCHHHHHHHCTTTSCGGGCCSSHHHHHHHHHHHHHHC---
T ss_pred EEeeccchhheeecccCCHHHHHHHHHHheeeccCCchhHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999988766544
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-54 Score=515.60 Aligned_cols=531 Identities=16% Similarity=0.145 Sum_probs=389.5
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh-hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
+|+++++++++.+.++.+++..++++|.++++. +.+|++++++||||||||+++++++++.. ... +..++++.
T Consensus 9 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~-----~~~il~i~ 82 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL-LKN-----GGKAIYVT 82 (715)
T ss_dssp BGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHH-HHS-----CSEEEEEC
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHH-HHC-----CCeEEEEe
Confidence 699999999999999999999999999999999 88999999999999999999999887643 111 23578889
Q ss_pred cchhhhccHHHHHH--HhccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhH
Q 004850 124 PRRVAAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLAT 200 (727)
Q Consensus 124 p~~~~~~~v~~~v~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~ 200 (727)
|++..+.++++++. ...+..++..+|+..+.+... .++.|.++|+|++.+++..++. +.++++||+||+|+.. +
T Consensus 83 P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~- 159 (715)
T 2va8_A 83 PLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-D- 159 (715)
T ss_dssp SCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-C-
T ss_pred CcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-C-
Confidence 99988888888883 234667777777765554432 3788999999999998887776 8999999999999732 1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhhhcCCCeeeeCCCccceeeeeccCC--------------cccH--H
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYFYGAPLMKVPGRLHPVEIFYTQEP--------------ERDY--L 263 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~--------------~~~~--~ 263 (727)
+.....+..+..+.++.++|+||||++ .+.+++||+ ++.+..+++.+|+..++...+ .... .
T Consensus 160 ~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (715)
T 2va8_A 160 PERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGD 238 (715)
T ss_dssp TTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccc
Confidence 112223333333333789999999995 889999986 667778888888765442211 0000 1
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhh--cC--------------CC-----------CCCeEEE
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITN--MG--------------DQ-----------VGPVKVV 316 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~--~~--------------~~-----------~~~~~v~ 316 (727)
......+.+.+ ...+++|||++|+++++.++..|.+.... +. .. .....+.
T Consensus 239 ~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 239 DAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp SHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred hHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 22344444444 35689999999999999999999864211 00 00 0012488
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhh
Q 004850 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKAS 396 (727)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~ 396 (727)
++||+|++++|..+++.|++| .++||||||++|+|||+|++++|||+ ...||+.++.. ..|.|.++
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g-------~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~ 382 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQR-------KIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIME 382 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTT-------CSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHH
T ss_pred EECCCCCHHHHHHHHHHHHcC-------CCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHH
Confidence 899999999999999999999 89999999999999999999999996 45678665443 45999999
Q ss_pred HHhhhcccCCCC---CceEEEecchhh-hcccCC--CCCCCcccccCchh------hHHHHHHcCCC----Ccccc---c
Q 004850 397 AHQRSGRAGRTQ---PGKCFRLYTEKS-FNNDLQ--PQTYPEILRSNLAN------TVLTLKKLGID----DLVHF---D 457 (727)
Q Consensus 397 ~~qR~GRaGR~~---~G~~~~L~t~~~-~~~~l~--~~~~pei~r~~l~~------~~L~lk~~~~~----~~~~~---~ 457 (727)
|.||+|||||.+ +|.||+|+++.+ +...+. ....||+.+++|.. .+|.+..+|.- ++..| .
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~ 462 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYES 462 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTS
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhh
Confidence 999999999996 899999998765 221111 14578999998876 67777777732 22222 3
Q ss_pred CCC-CCcHHHHHHHHHHHHHcCCcCCCC---CcchhhhhhccCCCChhhhhHHhhcCCC---CChHHHHHHHHHhcC-CC
Q 004850 458 FMD-PPAPETLMRALEVLNYLGALDDDG---NLTEMGEKMSEFPLDPQMSKMLVESPKY---NCSNEILSISAMLSV-PN 529 (727)
Q Consensus 458 ~~~-~P~~~~i~~a~~~L~~lgald~~~---~lT~lG~~l~~lPl~p~~~k~ll~~~~~---~c~~~~l~i~a~ls~-~~ 529 (727)
|+. +|+...+..|++.|..+|+|+.++ .+|++|+.|+.+|++|+.|++++.+... .|..+++.|+|+.+. .+
T Consensus 463 ~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~ 542 (715)
T 2va8_A 463 LLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542 (715)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCC
T ss_pred HHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCccccc
Confidence 443 455677999999999999998874 8999999999999999999999998876 799999999888774 77
Q ss_pred CCCCchHHHHHHHHHHHH-----hCC-CCC--------CHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHH
Q 004850 530 CFVRPREAQKAADEAKAR-----FGH-IDG--------DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQL 595 (727)
Q Consensus 530 ~f~~~~~~~~~~~~~~~~-----~~~-~~s--------D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql 595 (727)
+|.++.+... ....... +.. +.. .|+-..-++++|.+......+|.++++....++.+.+...+|
T Consensus 543 ~~~r~~e~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l 621 (715)
T 2va8_A 543 VSVGRNEEEE-LIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWL 621 (715)
T ss_dssp CCCCHHHHHH-HHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccChHHHHH-HHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 8887654332 2211110 111 111 244455567889877777789999999999999888888887
Q ss_pred HHHHHHc
Q 004850 596 VRIMARF 602 (727)
Q Consensus 596 ~~~l~~~ 602 (727)
.+.+.++
T Consensus 622 ~~a~~~i 628 (715)
T 2va8_A 622 TYSAYHL 628 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 3
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.6e-54 Score=444.72 Aligned_cols=248 Identities=42% Similarity=0.787 Sum_probs=224.4
Q ss_pred cccccC-CCCCcHHHHHHHHHHHHHcCCcCCCCCcchhhhhhccCCCChhhhhHHhhcCCCCChHHHHHHHHHhcCCCCC
Q 004850 453 LVHFDF-MDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCF 531 (727)
Q Consensus 453 ~~~~~~-~~~P~~~~i~~a~~~L~~lgald~~~~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f 531 (727)
...|+| +|||+.+++.+|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.+++++|||+||++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 355788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHHcCCcccCCCC
Q 004850 532 VRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLKLCSNDF 611 (727)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~sD~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~~~~~~~~~~~ 611 (727)
..|.+.++++++++..|.+..|||++++|+|++|.+++...+||++||||+++|+++.++|.||.+++++.++...+++
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~- 163 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG- 163 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT-
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc-
Confidence 9999999999999999999999999999999999988778899999999999999999999999999999988765432
Q ss_pred CCcchHHHHHHHHHHhcccceEEEcCCCcEEEeecCceEEECCCCCC-CCCCcEEEEeeeccchhhhcccccccCHHHHH
Q 004850 612 NSRDYYVNIRKAMLAGYFMQVAHLERTGQYLTVKDNQVVHLHPSNCL-DHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLI 690 (727)
Q Consensus 612 ~~~~~~~~i~~~l~~g~~~nva~~~~~~~y~~~~~~~~~~ihpsS~l-~~~~~~vvy~e~~~t~~~~~~~~t~i~~~wl~ 690 (727)
.+.+.|++|||+|||+|||++++++.|+++.+|+.++|||||+| ...|+||||+|++.|+|.|||+||+|+|+||.
T Consensus 164 ---~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~ 240 (270)
T 3i4u_A 164 ---KSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLV 240 (270)
T ss_dssp ---TCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred ---chHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHH
Confidence 24578999999999999999998888999999999999999999 45799999999999999999999999999999
Q ss_pred hhcCcccccccCCc
Q 004850 691 DIAPHYYDLSNFPQ 704 (727)
Q Consensus 691 ~~~~~~~~~~~~~~ 704 (727)
+++|++|+..++..
T Consensus 241 ~~ap~~~~~~~~~~ 254 (270)
T 3i4u_A 241 EFAPAFFKVLEVDL 254 (270)
T ss_dssp HHCTTTEECC----
T ss_pred HHhHHHhccccccc
Confidence 99999998887653
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.4e-53 Score=502.62 Aligned_cols=524 Identities=15% Similarity=0.135 Sum_probs=393.1
Q ss_pred CCCCCC--CChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEc
Q 004850 45 RWNGKP--YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (727)
Q Consensus 45 ~f~~~~--l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (727)
+|++++ +++.+.+.++..++..++++|.++++.+.+|++++++||||||||+++.+++++... . +..++++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~------~~~~l~i 74 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-K------GGKSLYV 74 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-T------TCCEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-h------CCcEEEE
Confidence 477788 899999999998998999999999999999999999999999999999988876531 1 1236677
Q ss_pred ccchhhhccHHHHHH--HhccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCc----
Q 004850 123 QPRRVAAMSVSRRVA--EEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE---- 195 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~--~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEahe---- 195 (727)
.|++..+.++++++. ...+..++..+|+..+.+... ..+.|.++|+|++.+.+..+.. +.++++||+||+|+
T Consensus 75 ~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp ESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred eCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC
Confidence 788888888888873 234566777777765554432 3788999999999998887765 89999999999997
Q ss_pred -ChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc-HHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHH---------
Q 004850 196 -RTLATDVLFGLLKEVLKNRPDLKLVVMSATLE-AEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLE--------- 264 (727)
Q Consensus 196 -r~~~~d~ll~ll~~l~~~~~~~~vil~SATl~-~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~--------- 264 (727)
|....+.++..++ ...++.++|+||||++ .+.+++|++ ++++..+++.+|+..++...+...+.+
T Consensus 154 ~r~~~~~~ll~~l~---~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 229 (702)
T 2p6r_A 154 KRGATLEILVTKMR---RMNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV 229 (702)
T ss_dssp TTHHHHHHHHHHHH---HHCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEEC
T ss_pred CcccHHHHHHHHHH---hcCcCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhh
Confidence 4444444544444 3456899999999996 888999886 678888888888877654332111000
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCC----------C-----------CeEEEEecCCCC
Q 004850 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV----------G-----------PVKVVPLYSTLP 323 (727)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~----------~-----------~~~v~~lh~~l~ 323 (727)
.....+.+... ..+++|||++++++++.++..|......+.... . +..+.++||+|+
T Consensus 230 ~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 230 KFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp CHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 02333333332 568999999999999999999987532210000 0 123778999999
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcc
Q 004850 324 PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (727)
Q Consensus 324 ~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GR 403 (727)
+++|..+++.|++| .++||||||++|+|||+|++++||++ ...|| +. ..|.|.++|.||+||
T Consensus 308 ~~~R~~v~~~f~~g-------~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 308 NGQRRVVEDAFRRG-------NIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHHHHHHHHHTT-------SCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC-------CCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhh
Confidence 99999999999999 89999999999999999999999996 45676 11 349999999999999
Q ss_pred cCCCC---CceEEEecchhhhcccCC--CCCCCcccccCchh------hHHHHHHcCC-CC---cccc---cCC----CC
Q 004850 404 AGRTQ---PGKCFRLYTEKSFNNDLQ--PQTYPEILRSNLAN------TVLTLKKLGI-DD---LVHF---DFM----DP 461 (727)
Q Consensus 404 aGR~~---~G~~~~L~t~~~~~~~l~--~~~~pei~r~~l~~------~~L~lk~~~~-~~---~~~~---~~~----~~ 461 (727)
|||.+ +|.||+++++.++...+. -...||+.+++|.. .+|.+...|. .+ +..| .|+ ++
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~ 449 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEI 449 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCC
T ss_pred cCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhH
Confidence 99996 899999999887543222 24579999998876 5667777773 22 2111 222 36
Q ss_pred CcHHHHHHHHHHHHHcCCcCCC--CCcchhhhhhccCCCChhhhhHHhhcCCC--CChHHHHHHHHHhcC-CCCCCCchH
Q 004850 462 PAPETLMRALEVLNYLGALDDD--GNLTEMGEKMSEFPLDPQMSKMLVESPKY--NCSNEILSISAMLSV-PNCFVRPRE 536 (727)
Q Consensus 462 P~~~~i~~a~~~L~~lgald~~--~~lT~lG~~l~~lPl~p~~~k~ll~~~~~--~c~~~~l~i~a~ls~-~~~f~~~~~ 536 (727)
|..+.+..|++.|..+|+|+.+ +.+|++|+.|+.+|++|..+++++.+... .|..+++.|+|+.+. .++|.++.+
T Consensus 450 ~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e 529 (702)
T 2p6r_A 450 SLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD 529 (702)
T ss_dssp CCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch
Confidence 8889999999999999999987 78999999999999999999999999988 899999999988775 668887765
Q ss_pred HHHHHHHH-H--HHh-CCC--CC-------CHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHHHHHHHHHH
Q 004850 537 AQKAADEA-K--ARF-GHI--DG-------DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMAR 601 (727)
Q Consensus 537 ~~~~~~~~-~--~~~-~~~--~s-------D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ql~~~l~~ 601 (727)
..-.+.. + ..+ ..+ .. .++-..-++++|.+......+|.++++....++.+.+...+|.+.+.+
T Consensus 530 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~ 606 (702)
T 2p6r_A 530 -SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNR 606 (702)
T ss_dssp -HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHH
Confidence 2211111 1 122 111 11 355566677899876666788999999888888777766666655543
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.1e-50 Score=474.81 Aligned_cols=548 Identities=15% Similarity=0.113 Sum_probs=384.4
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh-hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV-LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~-i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
+|+++++++++.+.++.+++..++++|.++++. +.+|++++++||||||||+++.+++++.. ... +..++++.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~-----~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI-LTQ-----GGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHH-HHH-----CSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHH-HhC-----CCEEEEEc
Confidence 588999999999999999999999999999998 89999999999999999999988887543 111 23477788
Q ss_pred cchhhhccHHHHHHH--hccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCc-----
Q 004850 124 PRRVAAMSVSRRVAE--EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE----- 195 (727)
Q Consensus 124 p~~~~~~~v~~~v~~--~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEahe----- 195 (727)
|++..+.++++++.. ..+..++..+|.. ..+.....++.|.++|+|++..++..+.. +.++++||+||+|.
T Consensus 76 P~raLa~q~~~~~~~l~~~g~~v~~~~G~~-~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEKIGLRVAMATGDY-DSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp SSGGGHHHHHHHTGGGGGGTCCEEEECSCS-SCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred CcHHHHHHHHHHHHHHHhcCCEEEEecCCC-CccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc
Confidence 999888888888852 2345555555522 22222234678999999999998877665 89999999999993
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccH-------HHHHH
Q 004850 196 RTLATDVLFGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDY-------LEAAI 267 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~-------~~~~~ 267 (727)
|....+.++..++ ++.++|++|||+ +.+.+++|++ ++.+..+++..|+..++...+...+ .....
T Consensus 155 r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T 2zj8_A 155 RGATLEVILAHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWE 227 (720)
T ss_dssp THHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTT
T ss_pred ccHHHHHHHHHhh------cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHH
Confidence 3333333333332 278999999999 5788999885 5566677777777654432111000 11122
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCC------------CC------------CCeEEEEecCCCC
Q 004850 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGD------------QV------------GPVKVVPLYSTLP 323 (727)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~------------~~------------~~~~v~~lh~~l~ 323 (727)
..+.+.+. ..+++|||++++++++.++..|.+....+.. .. -...+.++||+|+
T Consensus 228 ~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 228 ELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp HHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 33333332 4689999999999999999999865321000 00 0123899999999
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcc
Q 004850 324 PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (727)
Q Consensus 324 ~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GR 403 (727)
+++|..+++.|++| .++|||||+++|+|||+|++++||+.+ ..|| ..|. .|.|.++|.||+||
T Consensus 306 ~~~R~~v~~~f~~g-------~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~~~~Qr~GR 368 (720)
T 2zj8_A 306 RDERVLVEENFRKG-------IIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPIIEVHQMLGR 368 (720)
T ss_dssp HHHHHHHHHHHHTT-------SSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC-------CCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCCC-----ccCCHHHHHHHHhh
Confidence 99999999999999 899999999999999999999999954 3455 2222 39999999999999
Q ss_pred cCCCC---CceEEEecchhhhcc---cCCCCCCCccccc-----CchhhHHHHHHcCCC-C---ccc---ccCC------
Q 004850 404 AGRTQ---PGKCFRLYTEKSFNN---DLQPQTYPEILRS-----NLANTVLTLKKLGID-D---LVH---FDFM------ 459 (727)
Q Consensus 404 aGR~~---~G~~~~L~t~~~~~~---~l~~~~~pei~r~-----~l~~~~L~lk~~~~~-~---~~~---~~~~------ 459 (727)
|||.+ +|.||.++++.++.. .+-...++++... .|...++.+...|.. + +.+ +.|+
T Consensus 369 aGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~ 448 (720)
T 2zj8_A 369 AGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD 448 (720)
T ss_dssp BCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC
T ss_pred cCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccc
Confidence 99985 799999999876322 1222333333322 244455666666532 1 211 2332
Q ss_pred CCCcHHHHHHHHHHHHHcCCcC-CCC---CcchhhhhhccCCCChhhhhHHhhcCCC----CChHHHHHHHHHhcC-CCC
Q 004850 460 DPPAPETLMRALEVLNYLGALD-DDG---NLTEMGEKMSEFPLDPQMSKMLVESPKY----NCSNEILSISAMLSV-PNC 530 (727)
Q Consensus 460 ~~P~~~~i~~a~~~L~~lgald-~~~---~lT~lG~~l~~lPl~p~~~k~ll~~~~~----~c~~~~l~i~a~ls~-~~~ 530 (727)
++|..+.+..|++.|...|+|+ .++ .+|++|+.|+.+|++|..+++++.+... .|..+++.|+|+.+. .++
T Consensus 449 ~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i 528 (720)
T 2zj8_A 449 TYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPF 528 (720)
T ss_dssp CHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCC
T ss_pred hHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCcccccc
Confidence 2334578999999999999998 665 7999999999999999999999998877 899999999999886 778
Q ss_pred CCCchHHHHHHHHHHH---Hh-CC---CCC----------CHHHHHHHHHHHhhcCCchhhHHhhcCChHHHHHHHHHHH
Q 004850 531 FVRPREAQKAADEAKA---RF-GH---IDG----------DHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQ 593 (727)
Q Consensus 531 f~~~~~~~~~~~~~~~---~~-~~---~~s----------D~l~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~i~~ 593 (727)
|+++.+...-.+.... .. .. ..+ .++-..-++++|.+.......+.++++....++.+.+-..
T Consensus 529 ~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~ 608 (720)
T 2zj8_A 529 NYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAE 608 (720)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHH
Confidence 8887654332222111 01 10 111 2344455668888766556778888888877777666665
Q ss_pred HHHHHHHH----cCCcccCCCCCCcchHHHHHHHHHHhcccc
Q 004850 594 QLVRIMAR----FNLKLCSNDFNSRDYYVNIRKAMLAGYFMQ 631 (727)
Q Consensus 594 ql~~~l~~----~~~~~~~~~~~~~~~~~~i~~~l~~g~~~n 631 (727)
.|.+.+.+ .|.... ......+.+++..|..+.
T Consensus 609 ~l~~a~~~i~~~~g~~~~------~~~l~~l~~rl~~gv~~e 644 (720)
T 2zj8_A 609 WLVYSLKEIAKVLGAYEI------VDYLETLRVRVKYGIREE 644 (720)
T ss_dssp HHHHHHHHHHHHHTCGGG------HHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHcCcHHH------HHHHHHHHHHHHcCCCcc
Confidence 65555433 332110 012233666777776543
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.5e-42 Score=380.98 Aligned_cols=344 Identities=16% Similarity=0.193 Sum_probs=259.8
Q ss_pred CcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccC----CC
Q 004850 35 MMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----ET 110 (727)
Q Consensus 35 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~----~~ 110 (727)
.....+.++.+|+++++++.+.+.+...++..++++|.++++.+.+|++++++++||||||+++..+++....- ..
T Consensus 47 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~ 126 (434)
T 2db3_A 47 TGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELE 126 (434)
T ss_dssp ESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCC
T ss_pred cCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccc
Confidence 33445567789999999999999999999999999999999999999999999999999999988776644211 11
Q ss_pred ccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCee
Q 004850 111 PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKV 187 (727)
Q Consensus 111 ~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~ 187 (727)
....+.++++||+++..|....++.++...+..++..+|........ ...+..|.++|+|++.+.+..... +.++++
T Consensus 127 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~ 206 (434)
T 2db3_A 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF 206 (434)
T ss_dssp TTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCE
T ss_pred cCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCe
Confidence 11234556667777666666666666655555555555533211111 123568899999999998776554 889999
Q ss_pred EEeeccCcChhhHHHHHHHHHHHHHh---CCCCEEEEEcCcccH--HHHHhhhcCCCee-eeCC---CccceeeeeccCC
Q 004850 188 IVLDEAHERTLATDVLFGLLKEVLKN---RPDLKLVVMSATLEA--EKFQGYFYGAPLM-KVPG---RLHPVEIFYTQEP 258 (727)
Q Consensus 188 lIlDEaher~~~~d~ll~ll~~l~~~---~~~~~vil~SATl~~--~~~~~~f~~~p~i-~v~g---~~~~v~~~y~~~~ 258 (727)
||+|||| ++++.++. ..+..+... +++.+++++|||++. ..++..+...++. .+.. ....+.+.+....
T Consensus 207 lVlDEah-~~~~~gf~-~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~ 284 (434)
T 2db3_A 207 VVLDEAD-RMLDMGFS-EDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN 284 (434)
T ss_dssp EEEETHH-HHTSTTTH-HHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC
T ss_pred EEEccHh-hhhccCcH-HHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeC
Confidence 9999999 56665533 334444433 468999999999964 4444444344443 3321 2345666666666
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 004850 259 ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPS 338 (727)
Q Consensus 259 ~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~ 338 (727)
..++...++..+ .... +++|||++++++++.+++.|... ++.+..+||++++.+|.++++.|+.|
T Consensus 285 ~~~k~~~l~~~l----~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g- 349 (434)
T 2db3_A 285 KYAKRSKLIEIL----SEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNG- 349 (434)
T ss_dssp GGGHHHHHHHHH----HHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTS-
T ss_pred cHHHHHHHHHHH----HhCC-CCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcC-
Confidence 556555444333 2223 34999999999999999999874 67899999999999999999999998
Q ss_pred CCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecc
Q 004850 339 KEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (727)
Q Consensus 339 ~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t 417 (727)
..+||||||++++|||||+|++||++|+ |.+.++|+||+|||||. ++|.|+.||+
T Consensus 350 ------~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~ 405 (434)
T 2db3_A 350 ------SMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFD 405 (434)
T ss_dssp ------SCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred ------CCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEe
Confidence 8899999999999999999999999999 99999999999999999 8999999999
Q ss_pred hh
Q 004850 418 EK 419 (727)
Q Consensus 418 ~~ 419 (727)
++
T Consensus 406 ~~ 407 (434)
T 2db3_A 406 PE 407 (434)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.1e-41 Score=373.14 Aligned_cols=345 Identities=14% Similarity=0.222 Sum_probs=240.6
Q ss_pred CCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceE
Q 004850 39 NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMM 118 (727)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~ 118 (727)
.+...++|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..++++.... .....+.++
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~li 113 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-DLKATQALV 113 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-TSCSCCEEE
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-cCCceeEEE
Confidence 3445678999999999999999999999999999999999999999999999999999998888765421 111223444
Q ss_pred EEEcccchhhhccHHHHHHHhccccccceeceeee---eccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccC
Q 004850 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAH 194 (727)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEah 194 (727)
++|++.+..+.....+.+....+..+...+|.... ..........|.++|+|++.+.+..+.+ +.++++||+||||
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 55555555444444444444444444333332211 1111224568899999999998877664 7889999999999
Q ss_pred cChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcccHH--HHH-hhhcCCCeeeeCCC---ccceeeeeccCCcccHHHHHH
Q 004850 195 ERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE--KFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAI 267 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~~--~~~-~~f~~~p~i~v~g~---~~~v~~~y~~~~~~~~~~~~~ 267 (727)
. ..+.++. ..+..+.. ..++.++++||||++.. .+. .++.+...+.+... ...+..+|......+. ..
T Consensus 194 ~-~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 268 (414)
T 3eiq_A 194 E-MLSRGFK-DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KL 268 (414)
T ss_dssp H-HHHTTTH-HHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HH
T ss_pred H-hhccCcH-HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HH
Confidence 5 4444333 33333333 34589999999999643 333 44444333333332 2234555555443332 23
Q ss_pred HHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcE
Q 004850 268 RTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRK 347 (727)
Q Consensus 268 ~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~k 347 (727)
..+..+......+++|||++++++++.+++.|... ++.+..+||++++.+|.++++.|++| ..+
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g-------~~~ 332 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSG-------SSR 332 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcC-------CCc
Confidence 34445555566789999999999999999999864 57899999999999999999999998 889
Q ss_pred EEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 348 vlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
|||||+++++|||+|++++||++|+ |.|.++|+||+|||||. ++|.||.||++.+...
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred EEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 9999999999999999999999999 99999999999999999 7899999999876543
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3e-39 Score=357.27 Aligned_cols=341 Identities=17% Similarity=0.233 Sum_probs=248.1
Q ss_pred cccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEE
Q 004850 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (727)
....+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..++++..... ....+.++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~ 112 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILA 112 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEEC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEc
Confidence 445689999999999999999999999999999999999999999999999999999998888764211 1122344444
Q ss_pred EcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcCh
Q 004850 121 CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~ 197 (727)
|++.+..+.......+....+..+....|.....+.. ......|.++|+|.+...+....+ +.++++||+||||. .
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~ 191 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-M 191 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-H
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-H
Confidence 4444444444444444333344443333322111111 112457889999999988876544 78899999999994 4
Q ss_pred hhHHHHHHHHHHHHHh-CCCCEEEEEcCcccHHH--HHhhhcCCCee-eeCC---CccceeeeeccCCccc-HHHHHHHH
Q 004850 198 LATDVLFGLLKEVLKN-RPDLKLVVMSATLEAEK--FQGYFYGAPLM-KVPG---RLHPVEIFYTQEPERD-YLEAAIRT 269 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~~~--~~~~f~~~p~i-~v~g---~~~~v~~~y~~~~~~~-~~~~~~~~ 269 (727)
.+.++ ...+..+... .++.+++++|||++... +...+...|.. .+.. ....+..+|......+ +...
T Consensus 192 ~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---- 266 (410)
T 2j0s_A 192 LNKGF-KEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT---- 266 (410)
T ss_dssp TSTTT-HHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH----
T ss_pred Hhhhh-HHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH----
Confidence 44443 2333444433 34789999999997543 33333334443 2222 1234556665544433 3332
Q ss_pred HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 004850 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (727)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (727)
+..+......+++|||++++++++.+++.|... ++.+..+||++++.+|.++++.|++| ..+||
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g-------~~~vl 330 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSG-------ASRVL 330 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHT-------SSCEE
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCC-------CCCEE
Confidence 223333334678999999999999999999874 57799999999999999999999998 88999
Q ss_pred EecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 350 vaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
|||+++++|||+|++++||++|+ |.+.++|+||+|||||. ++|.||.|+++.+..
T Consensus 331 v~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 331 ISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp EECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred EECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 99999999999999999999999 99999999999999999 899999999987753
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=355.95 Aligned_cols=344 Identities=17% Similarity=0.164 Sum_probs=249.6
Q ss_pred CcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCC----------
Q 004850 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE---------- 109 (727)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~---------- 109 (727)
+.++.+|+++++++.+.+.+...++..++++|.++++.+..|+++++.+|||||||+++..+++....-.
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 4556789999999999999999999999999999999999999999999999999998877665432100
Q ss_pred -------CccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhccc
Q 004850 110 -------TPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDP 180 (727)
Q Consensus 110 -------~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~ 180 (727)
.....+.++++|++.+..+....++.+....+..+....|.....+.. ...+..|.++|+|++.+.+....
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 001122444555555555544444444444444443333322111110 12346789999999999887765
Q ss_pred c-ccCCeeEEeeccCcChhhHHHHHHHHHHHHHh--C---CCCEEEEEcCcccH--HHHHhhhcCCCeeeeCCC----cc
Q 004850 181 L-LERYKVIVLDEAHERTLATDVLFGLLKEVLKN--R---PDLKLVVMSATLEA--EKFQGYFYGAPLMKVPGR----LH 248 (727)
Q Consensus 181 l-l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~--~---~~~~vil~SATl~~--~~~~~~f~~~p~i~v~g~----~~ 248 (727)
+ +.++++||+||||. ..+.+ +...+..+... . ...+++++|||++. ..+...+.+.+.....+. ..
T Consensus 171 ~~~~~~~~iViDEah~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADR-MLDMG-FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp BCCTTCCEEEESSHHH-HHHTT-CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred cChhhCcEEEEEChhH-hhccC-cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 4 88999999999994 33333 33444444442 1 26799999999964 444444444554433222 22
Q ss_pred ceeeeeccCCcccHHHHHHHHHHHHhhc-CCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 249 PVEIFYTQEPERDYLEAAIRTVVQIHMC-EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 249 ~v~~~y~~~~~~~~~~~~~~~l~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
.+...+...+..++...+.. +... ...+++|||++++++++.+++.|... ++.+..+||++++++|
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLD----LLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDR 315 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHH----HHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred CceEEEEEeccHhHHHHHHH----HHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCCeeEecCCCCHHHH
Confidence 35555555555555444333 2222 34678999999999999999999874 5789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
.++++.|++| ..+|||||+++++|||+|+|++||++|+ |.|.++|+||+|||||.
T Consensus 316 ~~~~~~f~~g-------~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 316 EEALHQFRSG-------KSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp HHHHHHHHHT-------SSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC-
T ss_pred HHHHHHHHcC-------CCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccC
Confidence 9999999988 7899999999999999999999999999 99999999999999999
Q ss_pred -CCceEEEecchhhhcc
Q 004850 408 -QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 408 -~~G~~~~L~t~~~~~~ 423 (727)
++|.||.||++.+...
T Consensus 371 g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 371 GNLGLATSFFNERNINI 387 (417)
T ss_dssp -CCEEEEEEECGGGGGG
T ss_pred CCCceEEEEEccccHHH
Confidence 7899999999877644
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.9e-38 Score=348.85 Aligned_cols=342 Identities=17% Similarity=0.201 Sum_probs=242.2
Q ss_pred ccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEE
Q 004850 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (727)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (727)
+..+|+++++++.+.+.+...++..++++|.++++.+..+ +++++.+|||||||+++..++++... ......+.+++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~-~~~~~~~~lil 101 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCL 101 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCC-TTSCSCCEEEE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhh-hcCCCCCEEEE
Confidence 4568999999999999999999999999999999999987 89999999999999999888776541 11111223334
Q ss_pred EEcccchhhhccHHHHHHHhcc----ccccceeceeeeeccccccCccccccChHHHHHHHhccc--cccCCeeEEeecc
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMD----VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEA 193 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~----~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEa 193 (727)
.|++..+.++++.+.+... ..++..+|.. ...........|.++|+|++.+.+.... .+.++++||+||+
T Consensus 102 ---~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 102 ---SPTYELALQTGKVIEQMGKFYPELKLAYAVRGN-KLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp ---CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTC-CCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred ---CCCHHHHHHHHHHHHHHHhhcccceEEEeecCc-chhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 4555444555444443322 2222222221 1111222346789999999999886533 3689999999999
Q ss_pred CcChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcccHH--HHHh-hhcCCCeeeeCCC---ccceeeeeccCCcccHHHHH
Q 004850 194 HERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE--KFQG-YFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAA 266 (727)
Q Consensus 194 her~~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~~--~~~~-~f~~~p~i~v~g~---~~~v~~~y~~~~~~~~~~~~ 266 (727)
|. ..+.......+..+.. ..++.+++++|||++.. .+.. ++.+...+.+... ...+...+......+. .
T Consensus 178 h~-~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 253 (412)
T 3fht_A 178 DV-MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---K 253 (412)
T ss_dssp HH-HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH---H
T ss_pred HH-HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH---H
Confidence 94 3332222223333333 23478999999999653 3444 4443333333322 2345555555443322 2
Q ss_pred HHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCc
Q 004850 267 IRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGR 346 (727)
Q Consensus 267 ~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~ 346 (727)
...+..+......+++|||++++++++.+++.|... ++.+..+||++++.+|.++++.|++| ..
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g-------~~ 317 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREG-------KE 317 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTT-------SC
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCC-------CC
Confidence 233333333345679999999999999999999874 57789999999999999999999998 88
Q ss_pred EEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 347 kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+|||||+++++|||+|++++||++|+.....+ +.|.++|+||+|||||. ++|.||.|++..+
T Consensus 318 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp SEEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred cEEEEcCccccCCCccCCCEEEEECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99999999999999999999999998322211 26889999999999998 7899999998654
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.3e-38 Score=344.31 Aligned_cols=340 Identities=19% Similarity=0.226 Sum_probs=241.9
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEE
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (727)
..+|+++++++.+.+.+...++..++++|.++++.+..| +++++.+|||||||+++..+++.... ......+.++++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~-~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN-PEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCC-TTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhc-cCCCCccEEEEC
Confidence 468999999999999999999999999999999999998 89999999999999999888776541 111112233344
Q ss_pred EcccchhhhccHHHHHHH---hccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcC
Q 004850 121 CTQPRRVAAMSVSRRVAE---EMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~---~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher 196 (727)
|++..+.++++.+.+ ..+..+....|. ........+..|.++|++.+...+..... +.++++||+||||.
T Consensus 83 ---P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~- 156 (395)
T 3pey_A 83 ---PSRELARQTLEVVQEMGKFTKITSQLIVPD--SFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN- 156 (395)
T ss_dssp ---SSHHHHHHHHHHHHHHTTTSCCCEEEESTT--SSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH-
T ss_pred ---CCHHHHHHHHHHHHHHhcccCeeEEEEecC--chhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh-
Confidence 444444444444433 222222222221 11122233568899999999988866554 88999999999995
Q ss_pred hhhHHHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhh-hcCCCeeeeCCC---ccceeeeeccCCcccHHHHHHHH
Q 004850 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGY-FYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRT 269 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~-f~~~p~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~ 269 (727)
..+...+...+..+... .++.+++++|||++. ..+... +.+...+.+... ...+...|....... .....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 233 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEA---DKFDV 233 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHH---HHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchH---HHHHH
Confidence 33312233333344433 347899999999964 344433 333333333322 223445554433222 12333
Q ss_pred HHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 004850 270 VVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (727)
Q Consensus 270 l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (727)
+..+......+++|||++++++++.+++.|... ++.+..+||++++.+|.++++.|+.| ..+||
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g-------~~~vl 297 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFREG-------RSKVL 297 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTT-------SCCEE
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCC-------CCCEE
Confidence 444444456789999999999999999999874 57799999999999999999999998 88999
Q ss_pred EecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 350 VSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 350 vaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
|||+++++|||+|++++||++|+.+. ...+.|.++|+||+|||||. ++|.|+.+++..+
T Consensus 298 v~T~~~~~Gidip~~~~Vi~~~~p~~------------~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 298 ITTNVLARGIDIPTVSMVVNYDLPTL------------ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp EECGGGSSSCCCTTEEEEEESSCCBC------------TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EECChhhcCCCcccCCEEEEcCCCCC------------CcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 99999999999999999999998211 11134999999999999999 7799999998644
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.4e-38 Score=344.40 Aligned_cols=341 Identities=17% Similarity=0.176 Sum_probs=247.7
Q ss_pred ccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEE
Q 004850 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (727)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~ 121 (727)
...+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++... .......+.++++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~-~~~~~~~~~lil~P 97 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV-KPKLNKIQALIMVP 97 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHC-CTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHH-hhccCCccEEEEcC
Confidence 34579999999999999999999999999999999999999999999999999998887776543 11111122344444
Q ss_pred cccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChh
Q 004850 122 TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTL 198 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~ 198 (727)
++.+..+.....+.+....+..+....|....... .......|.++|++.+...+.... .+.++++||+||||. ..
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~ 176 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK-ML 176 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH-HS
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH-hh
Confidence 44444444444443333334443333332211111 112356788999999988776554 388999999999994 44
Q ss_pred hHHHHHHHHHHHHHhC-CCCEEEEEcCcccHH---HHHhhhcCCCeeeeCCC--ccceeeeeccCCcccHHHHHHHHHHH
Q 004850 199 ATDVLFGLLKEVLKNR-PDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGR--LHPVEIFYTQEPERDYLEAAIRTVVQ 272 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~-~~~~vil~SATl~~~---~~~~~f~~~p~i~v~g~--~~~v~~~y~~~~~~~~~~~~~~~l~~ 272 (727)
+.+ +...+..+.... +..+++++|||++.. .+..++.....+.+... ...+..+|......++...+. .
T Consensus 177 ~~~-~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~----~ 251 (400)
T 1s2m_A 177 SRD-FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLN----T 251 (400)
T ss_dssp SHH-HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHH----H
T ss_pred hhc-hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHH----H
Confidence 433 444555555443 478999999999642 23344443322332222 234556665555555544332 2
Q ss_pred HhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec
Q 004850 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (727)
Q Consensus 273 i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT 352 (727)
+......+++|||+++.++++.+++.|... ++.+..+||++++.+|..+++.|++| ..+|||||
T Consensus 252 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g-------~~~vLv~T 315 (400)
T 1s2m_A 252 LFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQG-------KVRTLVCS 315 (400)
T ss_dssp HHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTT-------SSSEEEES
T ss_pred HHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcC-------CCcEEEEc
Confidence 333346679999999999999999999875 57799999999999999999999988 88999999
Q ss_pred CccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 353 niAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
+++++|||+|++++||++|+ |.|.++|.||+|||||. ++|.||.||++.+...
T Consensus 316 ~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 316 DLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp SCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred CccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 99999999999999999999 99999999999999999 8999999999877643
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=359.42 Aligned_cols=344 Identities=17% Similarity=0.198 Sum_probs=132.0
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEE
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (727)
..+|.++++++.+.+.+...++..++++|.++++.+..| +++++.||||||||+++..+++.... ......+.++++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~-~~~~~~~~lil~ 169 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCLS 169 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC-TTSCSCCEEEEC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh-hcCCCCcEEEEe
Confidence 568999999999999999999999999999999999987 99999999999999999999887652 221222344455
Q ss_pred EcccchhhhccHHHHHHHhc-cccccceeceeeeeccccccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcCh
Q 004850 121 CTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERT 197 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~ 197 (727)
|++.+..|....++.+.... +..+...+|.. ...........|.++|+|++.+++..... +.++++||+||+|. .
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~-~ 247 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGN-KLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV-M 247 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTC-CCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH-H
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCc-cccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH-H
Confidence 55555444444444444322 12222222211 11122223457899999999998866443 68999999999994 4
Q ss_pred hhHHHHHHHHHHHHHh-CCCCEEEEEcCcccHH--HHHhh-hcCCCeeeeCCC---ccceeeeeccCCcccHHHHHHHHH
Q 004850 198 LATDVLFGLLKEVLKN-RPDLKLVVMSATLEAE--KFQGY-FYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~~--~~~~~-f~~~p~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
.+.......+..+... .++.+++++|||++.. .++.. +.+...+.+... ...+.+.|...+..+. ....+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 324 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQAL 324 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH---HHHHH
Confidence 4322233333333333 3478999999999753 44444 433334444332 2234445544433222 22233
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
..+......+++||||++++.++.+++.|... ++.+..+||++++.+|..+++.|+.| ..+|||
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g-------~~~iLv 388 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREG-------KEKVLV 388 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcC-------CCcEEE
Confidence 34444445678999999999999999999764 57899999999999999999999999 889999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
||+++++|||+|+|++||++|+.....+ +.|..+|+||+|||||. ++|.|+.|++..+
T Consensus 389 ~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 389 TTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EccccccCCccccCCEEEEecCCCCCcc------------CCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 9999999999999999999998222111 25778999999999999 7899999998755
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-37 Score=335.68 Aligned_cols=333 Identities=19% Similarity=0.250 Sum_probs=247.0
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC-CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN-QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g-~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (727)
.+|+++++++.+.+.++..++..++++|.++++.+.+| +++++.+|||||||+++..+++...... ...+ +++.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~---~lil 80 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIE---AIIL 80 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCC---EEEE
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCc---EEEE
Confidence 36999999999999999999999999999999999888 6999999999999999887776543111 1122 3333
Q ss_pred ccchhhhccHHHHHHHhc---cccccceeceeeeecc-ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcCh
Q 004850 123 QPRRVAAMSVSRRVAEEM---DVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~---~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~ 197 (727)
.|++..+.+.++.+.+.. +..+....|.....+. ....+..|.++|++.+.+.+..... +.+++++|+||||. .
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~ 159 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE-M 159 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-H
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-h
Confidence 455555555555555433 2223222332111110 0112567889999999988776554 78999999999995 3
Q ss_pred hhHHHHHHHHHHHHH-hCCCCEEEEEcCcccHH---HHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHH
Q 004850 198 LATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQI 273 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~~---~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i 273 (727)
.+.++ ...+..+.. ..++.+++++|||++.. ....++.+...+.. .....+...|......++...+...
T Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~---- 233 (367)
T 1hv8_A 160 LNMGF-IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA-KINANIEQSYVEVNENERFEALCRL---- 233 (367)
T ss_dssp HTTTT-HHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC-CSSSSSEEEEEECCGGGHHHHHHHH----
T ss_pred hhhch-HHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEe-cCCCCceEEEEEeChHHHHHHHHHH----
Confidence 33333 233333333 33588999999999753 33455554433332 2334566667666666665544332
Q ss_pred hhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecC
Q 004850 274 HMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN 353 (727)
Q Consensus 274 ~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn 353 (727)
.. ...+++|||+++.++++.+++.|... ++.+..+||+++..+|.++++.|++| ..+|||||+
T Consensus 234 l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~-------~~~vlv~T~ 296 (367)
T 1hv8_A 234 LK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQK-------KIRILIATD 296 (367)
T ss_dssp HC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTT-------SSSEEEECT
T ss_pred Hh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcC-------CCeEEEECC
Confidence 22 45778999999999999999999874 57799999999999999999999988 889999999
Q ss_pred ccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 354 IAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 354 iAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
++++|+|+|++++||++|. |.|..+|.||+|||||. ++|.||.++++.++..
T Consensus 297 ~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp THHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred hhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999999999999999 99999999999999999 7999999999877644
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3e-38 Score=346.68 Aligned_cols=346 Identities=17% Similarity=0.280 Sum_probs=132.9
Q ss_pred CCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCce
Q 004850 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKM 117 (727)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~ 117 (727)
..+....+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~-~~~~~~~~l 93 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQAL 93 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCC-TTCCSCCEE
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhh-ccCCCCCEE
Confidence 3445556799999999999999999999999999999999999999999999999999998877765431 111112344
Q ss_pred EEEEcccchhhhccHHHHHHHhccccccceeceeeeecccc-ccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCc
Q 004850 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE 195 (727)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEahe 195 (727)
+++|++.+..+.......+....+..+....|.....+... ..+..|.++|++.+.+.+..... +.++++||+||||.
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 44444444444443333333334444444444322111111 12467889999999988776554 78899999999995
Q ss_pred ChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcccHH---HHHhhhcCCCeeeeCCCc---cceeeeeccCCcccHHHHHHH
Q 004850 196 RTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRL---HPVEIFYTQEPERDYLEAAIR 268 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~~---~~~~~f~~~p~i~v~g~~---~~v~~~y~~~~~~~~~~~~~~ 268 (727)
..+.++. ..+..+.. ..++.+++++|||++.. ....++.+...+.+.... ..+..+|......++. ..
T Consensus 174 -~~~~~~~-~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 248 (394)
T 1fuu_A 174 -MLSSGFK-EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---YE 248 (394)
T ss_dssp -HHHTTCH-HHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------
T ss_pred -hhCCCcH-HHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH---HH
Confidence 3333322 22233333 34578999999999642 233444433333333221 1234444433332221 12
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 004850 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (727)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (727)
.+..+......+++|||++++++++.+++.|... ++.+..+||++++.+|.++++.|++| ..+|
T Consensus 249 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~-------~~~v 312 (394)
T 1fuu_A 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSG-------SSRI 312 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCC-------CCcE
Confidence 2233333345678999999999999999999764 57899999999999999999999998 8899
Q ss_pred EEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhcc
Q 004850 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 349 lvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~~ 423 (727)
||||+++++|+|+|++++||++|. |.|.++|.||+|||||. ++|.||.++++.+...
T Consensus 313 lv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 313 LISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 999999999999999999999998 99999999999999999 8999999999887644
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-36 Score=333.64 Aligned_cols=338 Identities=14% Similarity=0.175 Sum_probs=242.4
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.+|+++++++.+.+.+...++..++++|.++++.+..|+++++.+|||||||+++..+++.... ......+.++++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~-~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCC-CCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhc-ccCCCeeEEEECCCH
Confidence 4699999999999999999999999999999999999999999999999999988877765431 111112234344444
Q ss_pred cchhhhccHHHHHHHhc-cccccceeceeeeecc---ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChh
Q 004850 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTL 198 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~ 198 (727)
.+..+.....+.+.... +..+....|....... .......|.++|++.+...+..... +.++++||+||||. ..
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~-~~ 165 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK-ML 165 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH-HT
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH-Hh
Confidence 44433333333332222 3333333332110000 0112357889999999988766554 88999999999995 33
Q ss_pred hHHHHHHHHHHHHHhC-CCCEEEEEcCcccH--HHH-HhhhcCCCeeeeCCC----ccceeeeeccCCcccHHHHHHHHH
Q 004850 199 ATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKF-QGYFYGAPLMKVPGR----LHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 199 ~~d~ll~ll~~l~~~~-~~~~vil~SATl~~--~~~-~~~f~~~p~i~v~g~----~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
+...+...+..+.... ++.+++++|||++. ..+ ..++.+...+.+... ...+..+|...+..++...+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 244 (391)
T 1xti_A 166 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL- 244 (391)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHH-
T ss_pred hccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHH-
Confidence 3222333444444433 47899999999953 333 344443333333322 23455666665555554443333
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVV 350 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlv 350 (727)
......+++|||+++.++++.+++.|... ++.+..+||++++.+|.++++.|++| ..+|||
T Consensus 245 ---l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~-------~~~vlv 305 (391)
T 1xti_A 245 ---LDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDF-------QRRILV 305 (391)
T ss_dssp ---HHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTT-------CCSEEE
T ss_pred ---HHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcC-------CCcEEE
Confidence 22346789999999999999999999874 57799999999999999999999998 789999
Q ss_pred ecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 351 STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 351 aTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
||+++++|+|+|++++||++|. |.|.++|+||+|||||. ++|.|+.++++.+.
T Consensus 306 ~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 306 ATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp ESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred ECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 9999999999999999999999 99999999999999999 89999999987643
No 17
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-37 Score=354.38 Aligned_cols=306 Identities=23% Similarity=0.274 Sum_probs=226.1
Q ss_pred HHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHH
Q 004850 57 EILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 57 ~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
+.++.+..+|++.+|+++++.+.++++++++|+||||||+++++++++.. ..+++..|++..+.++++++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g----------~~vLVl~PTReLA~Qia~~l 277 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG----------YKVLVLNPSVAATLGFGAYM 277 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT----------CCEEEEESCHHHHHHHHHHH
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC----------CeEEEEcchHHHHHHHHHHH
Confidence 34677788999999999999999999999999999999999999988642 12556667788888889999
Q ss_pred HHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCC
Q 004850 137 AEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPD 216 (727)
Q Consensus 137 ~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~ 216 (727)
++.++..++..+|+.. ...+..|.++|+|+++. .....+.++++|||||||+.....+..+..+.+.......
T Consensus 278 ~~~~g~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 278 SKAHGIDPNIRTGVRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp HHHHSCCCEEECSSCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTC
T ss_pred HHHhCCCeeEEECcEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCC
Confidence 9988888777777653 23467899999999742 1122377899999999998666555545555444443334
Q ss_pred CEEEEEcCcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHH
Q 004850 217 LKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDAC 296 (727)
Q Consensus 217 ~~vil~SATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~ 296 (727)
..+++||||++... . ...|. .+++...+... ......... ......+++|||++++++++.++
T Consensus 351 ~llil~SAT~~~~i-~---~~~p~------i~~v~~~~~~~--i~~~~~~~~-----l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 351 RLVVLATATPPGSV-T---VPHPN------IEEVALSNTGE--IPFYGKAIP-----IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp SEEEEEESSCTTCC-C---CCCTT------EEEEECBSCSS--EEETTEEEC-----GGGSSSSEEEEECSCHHHHHHHH
T ss_pred ceEEEECCCCCccc-c---cCCcc------eEEEeecccch--hHHHHhhhh-----hhhccCCcEEEEeCCHHHHHHHH
Confidence 45788899996420 0 01111 11111111110 000000000 11235789999999999999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccce
Q 004850 297 RKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQK 376 (727)
Q Consensus 297 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~ 376 (727)
+.|++. ++.+..+||+|++++ |+.+ .++||||||+||+||||| |++|||+|+.+..
T Consensus 414 ~~L~~~---------g~~v~~lHG~l~q~e-------r~~~-------~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ 469 (666)
T 3o8b_A 414 AKLSGL---------GINAVAYYRGLDVSV-------IPTI-------GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQ 469 (666)
T ss_dssp HHHHTT---------TCCEEEECTTSCGGG-------SCSS-------SCEEEEECTTHHHHCCCC-BSEEEECCEEEEE
T ss_pred HHHHhC---------CCcEEEecCCCCHHH-------HHhC-------CCcEEEECChHHccCCCC-CcEEEecCccccc
Confidence 999864 688999999999875 2334 569999999999999997 9999999998877
Q ss_pred e----eccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhc
Q 004850 377 V----YNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (727)
Q Consensus 377 ~----~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~ 422 (727)
+ |||..++..+ ..|.|.++|+||+|||||.++|. |+||++.+..
T Consensus 470 ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 470 TVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred ccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 5 6787888665 56999999999999999998999 9999987653
No 18
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-35 Score=340.97 Aligned_cols=333 Identities=17% Similarity=0.149 Sum_probs=233.6
Q ss_pred CCCCCCCChHHHHHHHH-hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 45 RWNGKPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.+.++++++.+.+.++. .++..++++|.++++.+.+|+++++++|||+|||+.+..+.+... +. +++..
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~---------g~-~lVis 91 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD---------GF-TLVIC 91 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS---------SE-EEEEC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC---------Cc-EEEEe
Confidence 34568889999999988 488899999999999999999999999999999998877776532 22 23334
Q ss_pred cchhhhccHHHHHHHhccccccceeceeeeecc------c--cccCccccccChHHHHH------HHhccccccCCeeEE
Q 004850 124 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED------C--SSARTVLKYLTDGMLLR------EAMTDPLLERYKVIV 189 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~------~--~~~~~~i~~lT~G~l~r------~~~~~~ll~~~~~lI 189 (727)
|++..+.+..+.+... +.......|.....+. . ......+.++||+++.. .+.....+.++++||
T Consensus 92 P~~~L~~q~~~~l~~~-gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL-GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp SCHHHHHHHHHHHHHH-TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHhc-CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 5554455555555442 4333222222111100 0 12356788999998742 222222367899999
Q ss_pred eeccCcChhhH-HH--HHHHHHHHHHhCCCCEEEEEcCcccHH---HHHhhhcCC-CeeeeCCCccceeeeeccCCcccH
Q 004850 190 LDEAHERTLAT-DV--LFGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFYGA-PLMKVPGRLHPVEIFYTQEPERDY 262 (727)
Q Consensus 190 lDEaher~~~~-d~--ll~ll~~l~~~~~~~~vil~SATl~~~---~~~~~f~~~-p~i~v~g~~~~v~~~y~~~~~~~~ 262 (727)
+||||..+... ++ .+..+..+....|+.+++++|||++.. .+..++... +.+...+...| ..+|...+....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~~~~ 249 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYYEVRQKPSN 249 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEEEEEECCSS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEEEEEeCCCc
Confidence 99999633211 11 112233444556789999999999753 344555433 33332222222 222322211111
Q ss_pred HHHHHHHHHHHhhc-CCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCC
Q 004850 263 LEAAIRTVVQIHMC-EPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEG 341 (727)
Q Consensus 263 ~~~~~~~l~~i~~~-~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~ 341 (727)
....+..+...... ...+++|||++++++++.+++.|... ++.+..+||+|++++|.++++.|..|
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g---- 316 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSAN---- 316 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcC----
Confidence 22233344444332 35678999999999999999999874 68899999999999999999999998
Q ss_pred CCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 342 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 342 ~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
..+|||||+++++|||+|+|++||++++ |.|.++|.||+|||||. .+|.|+.||+..+
T Consensus 317 ---~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 317 ---EIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp ---SSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred ---CCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 8899999999999999999999999999 99999999999999999 7999999999887
Q ss_pred hcc
Q 004850 421 FNN 423 (727)
Q Consensus 421 ~~~ 423 (727)
...
T Consensus 376 ~~~ 378 (591)
T 2v1x_A 376 IFR 378 (591)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.1e-35 Score=339.06 Aligned_cols=340 Identities=13% Similarity=0.150 Sum_probs=234.9
Q ss_pred CChHHHHHHHHhcCCCchHHHHHHHHhhh--cCCEEEEEcCCCChhhchhhHHHhcCccC---CCccccCceEEEEcccc
Q 004850 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLK--ANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMMIACTQPR 125 (727)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~--~g~~vii~g~TGSGKTt~~~~~ll~~~~~---~~~~~~~~~~i~~t~p~ 125 (727)
+++.+.+.+...++..++++|.++++.+. .|+++++.+|||||||+++..+++....- ......+.++++|++++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 89999999999999999999999999998 67899999999999999887776644311 11111234445555555
Q ss_pred hhhhccHHHHHHHh-cccc---ccceeceeeeec---cccccCccccccChHHHHHHHhcc--ccccCCeeEEeeccCcC
Q 004850 126 RVAAMSVSRRVAEE-MDVT---IGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHER 196 (727)
Q Consensus 126 ~~~~~~v~~~v~~~-~~~~---~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lIlDEaher 196 (727)
..|.....+.+... .+.. +...+|...... ........|.++|+|++...+... ..+.++++||+||||.
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~- 237 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR- 237 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH-
Confidence 44444444443322 1111 222222211100 011235679999999999877653 3488999999999994
Q ss_pred hhhHH---HHHHHHHHHHHh----CCCCEEEEEcCcccH--HHHHhhhcCCC-eeeeCC-------CccceeeeeccCC-
Q 004850 197 TLATD---VLFGLLKEVLKN----RPDLKLVVMSATLEA--EKFQGYFYGAP-LMKVPG-------RLHPVEIFYTQEP- 258 (727)
Q Consensus 197 ~~~~d---~ll~ll~~l~~~----~~~~~vil~SATl~~--~~~~~~f~~~p-~i~v~g-------~~~~v~~~y~~~~- 258 (727)
..+.+ .+..++..+... .++.+++++|||++. ..+...+...+ .+.+.. ....+...+....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 33322 233333333222 237899999999963 55555544433 222211 1112333333222
Q ss_pred cccHHHHHHHHHHHHhh-cCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 004850 259 ERDYLEAAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (727)
Q Consensus 259 ~~~~~~~~~~~l~~i~~-~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (727)
..+.....+..+..... ....+++|||+++++.++.+++.|..... .++.+..+||+|++.+|.++++.|+.|
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcC
Confidence 22333333444443332 35577999999999999999999987641 257899999999999999999999998
Q ss_pred CCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEec
Q 004850 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLY 416 (727)
Q Consensus 338 ~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~ 416 (727)
..+|||||+++++|||+|+|++||++|+ |.|.++|+||+|||||. ++|.|+.++
T Consensus 392 -------~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~ 446 (563)
T 3i5x_A 392 -------ESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFI 446 (563)
T ss_dssp -------SSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred -------CCCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEE
Confidence 8899999999999999999999999999 99999999999999999 789999999
Q ss_pred chhhhc
Q 004850 417 TEKSFN 422 (727)
Q Consensus 417 t~~~~~ 422 (727)
++.+..
T Consensus 447 ~~~e~~ 452 (563)
T 3i5x_A 447 CKDELP 452 (563)
T ss_dssp EGGGHH
T ss_pred chhHHH
Confidence 987653
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.7e-35 Score=338.67 Aligned_cols=339 Identities=13% Similarity=0.153 Sum_probs=234.9
Q ss_pred CChHHHHHHHHhcCCCchHHHHHHHHhhh--cCCEEEEEcCCCChhhchhhHHHhcCccC---CCccccCceEEEEcccc
Q 004850 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLK--ANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMMIACTQPR 125 (727)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~--~g~~vii~g~TGSGKTt~~~~~ll~~~~~---~~~~~~~~~~i~~t~p~ 125 (727)
+++.+.+.+...++..++++|.++++.+. .|+++++.+|||||||+++..+++..... ......+.++++|++.+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 89999999999999999999999999998 78899999999999999888776643311 11111234444555544
Q ss_pred hhhhccHHHHHHHhc-c---ccccceeceeeeec---cccccCccccccChHHHHHHHhcc--ccccCCeeEEeeccCcC
Q 004850 126 RVAAMSVSRRVAEEM-D---VTIGEEVGYSIRFE---DCSSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAHER 196 (727)
Q Consensus 126 ~~~~~~v~~~v~~~~-~---~~~~~~vg~~~~~~---~~~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lIlDEaher 196 (727)
..|.....+.+.... + ..+...+|...... ........|.++|+|++..++... ..+.++++||+||||.
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~- 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR- 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH-
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH-
Confidence 444444444433211 1 11222222211101 011225679999999999877653 3588999999999995
Q ss_pred hhhHH---HHHHHHHHHHHhC----CCCEEEEEcCcccH--HHHHhhhcCCC-eeeeCC-------CccceeeeeccCCc
Q 004850 197 TLATD---VLFGLLKEVLKNR----PDLKLVVMSATLEA--EKFQGYFYGAP-LMKVPG-------RLHPVEIFYTQEPE 259 (727)
Q Consensus 197 ~~~~d---~ll~ll~~l~~~~----~~~~vil~SATl~~--~~~~~~f~~~p-~i~v~g-------~~~~v~~~y~~~~~ 259 (727)
..+.+ .+..++..+.... ++.++++||||++. ..+...+...| .+.+.. ....+...+...+.
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 33332 2333333333322 27799999999964 44544444433 222211 11223333332222
Q ss_pred -ccHHHHHHHHHHHHhh-cCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 004850 260 -RDYLEAAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (727)
Q Consensus 260 -~~~~~~~~~~l~~i~~-~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (727)
.......+..+..... ....+++|||+++++.++.+++.|..... .++.+..+||+|++.+|.++++.|+.|
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g 340 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKD 340 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcC
Confidence 2233333344443332 25567999999999999999999987641 257899999999999999999999998
Q ss_pred CCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEec
Q 004850 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLY 416 (727)
Q Consensus 338 ~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~ 416 (727)
..+|||||+++++|||+|+|++||++|+ |.|.++|+||+|||||. ++|.|+.++
T Consensus 341 -------~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~ 395 (579)
T 3sqw_A 341 -------ESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFI 395 (579)
T ss_dssp -------SSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred -------CCeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEE
Confidence 8899999999999999999999999999 99999999999999999 789999999
Q ss_pred chhhh
Q 004850 417 TEKSF 421 (727)
Q Consensus 417 t~~~~ 421 (727)
++.+.
T Consensus 396 ~~~e~ 400 (579)
T 3sqw_A 396 CKDEL 400 (579)
T ss_dssp EGGGH
T ss_pred cccHH
Confidence 98764
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-36 Score=365.66 Aligned_cols=344 Identities=15% Similarity=0.168 Sum_probs=245.5
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEccc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (727)
.|...++++.+...+......+++++|.++++.+..|++++++|+||||||+++..+++.... .+..++++.|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-------~g~rvlvl~P 235 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-------NKQRVIYTSP 235 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-------TTCEEEEEES
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-------cCCeEEEEcC
Confidence 566667666655555566778899999999999999999999999999999999888776531 1224666778
Q ss_pred chhhhccHHHHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHHH
Q 004850 125 RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVL 203 (727)
Q Consensus 125 ~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~l 203 (727)
++..+.+.++.+.+..+ .++...|. .....+..|.++|+|++...+..... +.++++||+|||| +..+.++-
T Consensus 236 traLa~Q~~~~l~~~~~-~VglltGd-----~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg 308 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG-DVGLMTGD-----ITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERG 308 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS-SEEEECSS-----CBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHH
T ss_pred cHHHHHHHHHHHHHHhC-CccEEeCc-----cccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchH
Confidence 88888888888877665 33332231 22334678999999999998887765 8899999999999 45554432
Q ss_pred HHHHHHHHHhCCCCEEEEEcCcc-cHHHHHhhhc---C--CCeeeeCCCccceeeeeccCCcc----------c-----H
Q 004850 204 FGLLKEVLKNRPDLKLVVMSATL-EAEKFQGYFY---G--APLMKVPGRLHPVEIFYTQEPER----------D-----Y 262 (727)
Q Consensus 204 l~ll~~l~~~~~~~~vil~SATl-~~~~~~~~f~---~--~p~i~v~g~~~~v~~~y~~~~~~----------~-----~ 262 (727)
..+-..+....++.++|+||||+ +...+++|+. + +.++....+..|+..++...... . +
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~ 388 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 388 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHH
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhH
Confidence 22222222334589999999999 4556666543 2 34555566777776655321100 0 0
Q ss_pred H------------------------------------HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhc
Q 004850 263 L------------------------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNM 306 (727)
Q Consensus 263 ~------------------------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~ 306 (727)
. ...+..++..+.....+++|||++++++++.++..|.......
T Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~ 468 (1108)
T 3l9o_A 389 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 468 (1108)
T ss_dssp HHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHC
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCC
Confidence 0 2223334444445567799999999999999999885421110
Q ss_pred CCC---------------------CC---------CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccc
Q 004850 307 GDQ---------------------VG---------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAE 356 (727)
Q Consensus 307 ~~~---------------------~~---------~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe 356 (727)
... .+ ...+..+||+|++.+|..+++.|+.| ..+|||||++++
T Consensus 469 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-------~ikVLVAT~vla 541 (1108)
T 3l9o_A 469 DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-------FLKVLFATETFS 541 (1108)
T ss_dssp C----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-------CCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC-------CCeEEEECcHHh
Confidence 000 00 01188999999999999999999999 899999999999
Q ss_pred cCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCC---CceEEEecchh
Q 004850 357 TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 419 (727)
Q Consensus 357 ~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~---~G~~~~L~t~~ 419 (727)
+|||||++++||+++. .||+.. ..|+|.++|+||+|||||.+ +|.||.++++.
T Consensus 542 ~GIDiP~v~~VI~~~~----~~d~~~------~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVR----KWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SCCCC--CEEEESCSE----EESSSC------EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cCCCCCCceEEEecCc----ccCccc------cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999875 344432 23899999999999999996 89999999875
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.1e-35 Score=315.45 Aligned_cols=311 Identities=17% Similarity=0.227 Sum_probs=225.4
Q ss_pred CChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhc
Q 004850 51 YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAM 130 (727)
Q Consensus 51 l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~ 130 (727)
+++.+.+.++..++..++++|.++++.+.+|+++++.+|||||||+++..+++... .+.++++ |++..+.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~-------~~~liv~---P~~~L~~ 70 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG-------MKSLVVT---PTRELTR 70 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT-------CCEEEEC---SSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc-------CCEEEEe---CCHHHHH
Confidence 46788999999999999999999999999999999999999999999888877531 2233344 4444444
Q ss_pred cHHHHHH---Hhccccccceeceeeeeccc-cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHHHHH
Q 004850 131 SVSRRVA---EEMDVTIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFG 205 (727)
Q Consensus 131 ~v~~~v~---~~~~~~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~ 205 (727)
+.++.+. ...+..+....|........ ...+..|.++|++.+.+.+..... +.++++||+||||. ..+.+ +..
T Consensus 71 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~-~~~ 148 (337)
T 2z0m_A 71 QVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADL-MFEMG-FID 148 (337)
T ss_dssp HHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHH-HHHTT-CHH
T ss_pred HHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHH-hhccc-cHH
Confidence 4444444 33334443333322111100 112467889999999988766543 78899999999994 33322 233
Q ss_pred HHHHHHHhC-CCCEEEEEcCcccHH---HHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCC
Q 004850 206 LLKEVLKNR-PDLKLVVMSATLEAE---KFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGD 281 (727)
Q Consensus 206 ll~~l~~~~-~~~~vil~SATl~~~---~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~ 281 (727)
.+..+.... +..+++++|||++.. .+..++.+...+........+...+........ ..+ ........++
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~ 222 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR--SKV----QALRENKDKG 222 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH--HHH----HHHHTCCCSS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH--HHH----HHHHhCCCCc
Confidence 334444333 367899999999653 445666554444333333345555554433221 111 2333456789
Q ss_pred EEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCccc
Q 004850 282 ILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTI 361 (727)
Q Consensus 282 iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitI 361 (727)
+|||+++.++++.+++.|. .+..+||+++..+|.++++.|++| ..+|||||+++++|+|+
T Consensus 223 ~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~-------~~~vlv~T~~~~~Gid~ 282 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREG-------EYDMLITTDVASRGLDI 282 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTT-------SCSEEEECHHHHTTCCC
T ss_pred EEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcC-------CCcEEEEcCccccCCCc
Confidence 9999999999988877653 267899999999999999999998 88999999999999999
Q ss_pred CCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecc
Q 004850 362 DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYT 417 (727)
Q Consensus 362 p~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t 417 (727)
|++++||++|. |.|.++|.||+|||||. ++|.|+.+++
T Consensus 283 ~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 283 PLVEKVINFDA------------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp CCBSEEEESSC------------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCEEEEecC------------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 99999999998 99999999999999999 8999999998
No 23
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.2e-35 Score=333.52 Aligned_cols=293 Identities=20% Similarity=0.240 Sum_probs=203.3
Q ss_pred HHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeee
Q 004850 75 LQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF 154 (727)
Q Consensus 75 i~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~ 154 (727)
..++.+|+++++.||||||||+++..++++.. ... +..+++..|++..+.++++.+. +..+++....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~-~~~-----~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDA-IQQ-----RLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHH-HHT-----TCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHH-HhC-----CCcEEEECchHHHHHHHHHHhc-------CceEeEEecc
Confidence 56688899999999999999999888777543 111 1223444466665555555543 1222222111
Q ss_pred cc-ccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHh
Q 004850 155 ED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (727)
Q Consensus 155 ~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~ 233 (727)
.. .......+.++|.|.+.+.++....+.++++||+||||++....+..++.+..... .++.++++||||++.....-
T Consensus 82 ~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~~~~ 160 (459)
T 2z83_A 82 VQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCSS
T ss_pred cccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcchhhh
Confidence 11 11234567789999999988888889999999999999876666666677666554 35899999999996432111
Q ss_pred hhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCe
Q 004850 234 YFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPV 313 (727)
Q Consensus 234 ~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~ 313 (727)
...+.|+..+... .|.. ...... ..+. ...+++|||++++++++.+++.|... ++
T Consensus 161 ~~~~~pi~~~~~~-~~~~------~~~~~~----~~l~-----~~~~~~LVF~~s~~~~~~l~~~L~~~---------g~ 215 (459)
T 2z83_A 161 PDSNAPIHDLQDE-IPDR------AWSSGY----EWIT-----EYAGKTVWFVASVKMGNEIAMCLQRA---------GK 215 (459)
T ss_dssp CCCSSCEEEEECC-CCSS------CCSSCC----HHHH-----HCCSCEEEECSCHHHHHHHHHHHHHT---------TC
T ss_pred ccCCCCeEEeccc-CCcc------hhHHHH----HHHH-----hcCCCEEEEeCChHHHHHHHHHHHhc---------CC
Confidence 1123444433211 1110 001111 1111 13679999999999999999999874 57
Q ss_pred EEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccc---ccc
Q 004850 314 KVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESL---LVS 390 (727)
Q Consensus 314 ~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l---~~~ 390 (727)
.+..+||. +|.++++.|++| ..+||||||++|+|||||+ ++|||+|..+.++|+ ..+.+.+ ...
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g-------~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~~~~~~d~ 282 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNG-------DWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGRVILGNPS 282 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSC-------CCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCEEEECSCE
T ss_pred cEEecCHH----HHHHHHhhccCC-------CceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccccccccCC
Confidence 89999984 788999999999 8999999999999999999 999999988887765 2333333 347
Q ss_pred cccHhhHHhhhcccCCC-C-CceEEEecchh
Q 004850 391 PISKASAHQRSGRAGRT-Q-PGKCFRLYTEK 419 (727)
Q Consensus 391 pis~~~~~qR~GRaGR~-~-~G~~~~L~t~~ 419 (727)
|.|.++|+||+|||||. . +|.||.|++..
T Consensus 283 p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 283 PITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999999 4 89999999875
No 24
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.1e-35 Score=333.40 Aligned_cols=300 Identities=19% Similarity=0.234 Sum_probs=211.0
Q ss_pred CchHHHHHHHHhhhcCC-EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 66 PVWQQKEEFLQVLKANQ-VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 66 p~~~~q~~ii~~i~~g~-~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
.++++|+ +++.+.+++ ++++.||||||||+++..+++... ... ..+ +++..|++..+.++++.+.
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~-~~~--~~~---~lvl~Ptr~La~Q~~~~l~------- 69 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA-LLR--RLR---TLILAPTRVVAAEMEEALR------- 69 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHH-HHT--TCC---EEEEESSHHHHHHHHHHTT-------
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHH-Hhc--CCc---EEEECCCHHHHHHHHHHhc-------
Confidence 3455565 566665554 558899999999998776665432 111 122 3333465555544444331
Q ss_pred cceeceeeeecc-ccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 145 GEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 145 ~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
+..+++...... .....+.+.++|+|.+.+.+.....+.++++||+||||......+..+..+.... ..++.++++||
T Consensus 70 g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~-~~~~~~~i~~S 148 (451)
T 2jlq_A 70 GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMT 148 (451)
T ss_dssp TSCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEC
T ss_pred CceeeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhh-cCCCceEEEEc
Confidence 223333322221 1223567789999999999888888999999999999976555555555554432 34589999999
Q ss_pred CcccHHHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHH
Q 004850 224 ATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI 303 (727)
Q Consensus 224 ATl~~~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~ 303 (727)
||++......++.+.+++.+. +..|... |.. . ...+. +..+++|||++++++++.+++.|...
T Consensus 149 AT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~~-----~----~~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~- 211 (451)
T 2jlq_A 149 ATPPGSTDPFPQSNSPIEDIE-REIPERS-WNT-----G----FDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKS- 211 (451)
T ss_dssp SSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CSS-----S----CHHHH-----HCCSCEEEECSSHHHHHHHHHHHHTT-
T ss_pred cCCCccchhhhcCCCceEecC-ccCCchh-hHH-----H----HHHHH-----hCCCCEEEEcCCHHHHHHHHHHHHHc-
Confidence 999764433344445555443 2233211 110 0 11111 13678999999999999999999763
Q ss_pred hhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccC
Q 004850 304 TNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVR 383 (727)
Q Consensus 304 ~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~ 383 (727)
++.+..+||++. .++++.|++| ..+||||||++|+|||||+ ++|||+|+.+...|| ..+
T Consensus 212 --------g~~~~~lh~~~~----~~~~~~f~~g-------~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~ 270 (451)
T 2jlq_A 212 --------GKRVIQLSRKTF----DTEYPKTKLT-------DWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDG 270 (451)
T ss_dssp --------TCCEEEECTTTH----HHHGGGGGSS-------CCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSS
T ss_pred --------CCeEEECCHHHH----HHHHHhhccC-------CceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccc
Confidence 577899999754 5788999998 8999999999999999999 999999999999998 667
Q ss_pred cccccc---ccccHhhHHhhhcccCCCC--CceEEEecch
Q 004850 384 VESLLV---SPISKASAHQRSGRAGRTQ--PGKCFRLYTE 418 (727)
Q Consensus 384 ~~~l~~---~pis~~~~~qR~GRaGR~~--~G~~~~L~t~ 418 (727)
.+.+.. .|.|.++|+||+|||||.+ +|.||.++..
T Consensus 271 ~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 271 PERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 777766 8999999999999999994 8999988753
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2e-35 Score=349.09 Aligned_cols=332 Identities=16% Similarity=0.158 Sum_probs=190.3
Q ss_pred HHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceEEEEcccchhhhccHHHHH
Q 004850 58 ILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 58 ~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
.+...++..++++|.++++.+..|+++++.+|||||||+++..++++...... ....+.++++|++++..+....++.+
T Consensus 5 ~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 5 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp --CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999999998887765431111 01123566677777777777776666
Q ss_pred HHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcChhhHHHHHHHHHHHHH
Q 004850 137 AEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLK 212 (727)
Q Consensus 137 ~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~~~~d~ll~ll~~l~~ 212 (727)
....+..++...|........ ......|.++|+|++.+.+....+ +.++++||+||||...-.. ....++..++.
T Consensus 85 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~-~~~~i~~~~l~ 163 (696)
T 2ykg_A 85 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH-PYNMIMFNYLD 163 (696)
T ss_dssp TTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC-HHHHHHHHHHH
T ss_pred hccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc-cHHHHHHHHHH
Confidence 655556555555533111111 113578899999999998887654 8899999999999743222 22223322222
Q ss_pred h------CCCCEEEEEcCccc-------H---HHHHhhhc--CCCeeeeC----------------------CCcc----
Q 004850 213 N------RPDLKLVVMSATLE-------A---EKFQGYFY--GAPLMKVP----------------------GRLH---- 248 (727)
Q Consensus 213 ~------~~~~~vil~SATl~-------~---~~~~~~f~--~~p~i~v~----------------------g~~~---- 248 (727)
. .+..+++++|||.. . +.+.+.+. +.+++... .+..
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1 35789999999985 1 22222110 11111110 0000
Q ss_pred --------------------------------------------------------------------------------
Q 004850 249 -------------------------------------------------------------------------------- 248 (727)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (727)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ----------------------------ceeeeecc--------------C--CcccHHHHHHHHHHHHhhcCCCCCEEE
Q 004850 249 ----------------------------PVEIFYTQ--------------E--PERDYLEAAIRTVVQIHMCEPSGDILV 284 (727)
Q Consensus 249 ----------------------------~v~~~y~~--------------~--~~~~~~~~~~~~l~~i~~~~~~g~iLV 284 (727)
+++..+.. . ....++..+...+.......+.+++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00000000 0 011222222333323222335678999
Q ss_pred ecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEe--------cCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEecCcc
Q 004850 285 FLTGEEEIEDACRKITKEITNMGDQVGPVKVVPL--------YSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIA 355 (727)
Q Consensus 285 Fl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvlvaTniA 355 (727)
|++++++++.+++.|...- ....+.+..+ ||+|++.+|.++++.|+. | ..+|||||+++
T Consensus 404 F~~~~~~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g-------~~~vLVaT~v~ 471 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-------DHNILIATSVA 471 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCT-----TCCSCCEEC------------------------------------CCSCSEEEESS
T ss_pred EeCcHHHHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-------CccEEEEechh
Confidence 9999999999999998741 0112666677 669999999999999998 8 88999999999
Q ss_pred ccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhh
Q 004850 356 ETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (727)
Q Consensus 356 e~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~ 421 (727)
++|||||+|++||++|+ |.|.++|+||+|| ||.++|.||.|+++.+.
T Consensus 472 ~~GiDip~v~~VI~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp CCC---CCCSEEEEESC------------------C--CCCC----------CCCEEEEEESCHHH
T ss_pred hcCCcCccCCEEEEeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 99999999999999999 8999999999999 99999999999998766
No 26
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.8e-35 Score=340.45 Aligned_cols=315 Identities=19% Similarity=0.280 Sum_probs=218.7
Q ss_pred CCCChHHHHHHHH--hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccch
Q 004850 49 KPYSQRYYEILEK--RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (727)
Q Consensus 49 ~~l~~~~~~~l~~--~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (727)
+++++.+.+.+.. +..+|++.. .++.+.+|+++++.|+||||||+++..+++... ... ..+.++++ |++
T Consensus 155 l~~~~~~~~~l~~~~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l-~~~--~~~vLvl~---Ptr 225 (618)
T 2whx_A 155 VTKSGDYVSAITQAERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA-LKR--RLRTLILA---PTR 225 (618)
T ss_dssp -------CEECBCCCCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHH-HHT--TCCEEEEE---SSH
T ss_pred ccchHHHHHHHhhccccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHH-HhC--CCeEEEEc---ChH
Confidence 5677776665554 556777654 499999999999999999999999877666543 111 12233333 555
Q ss_pred hhhccHHHHHHHhccccccceeceeeee-ccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHH
Q 004850 127 VAAMSVSRRVAEEMDVTIGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFG 205 (727)
Q Consensus 127 ~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ 205 (727)
..+.++.+.+. +..+++..+. +........+.++|.|.+.+.+..+..+.++++||+||||+.....+..+.
T Consensus 226 eLa~Qi~~~l~-------~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~ 298 (618)
T 2whx_A 226 VVAAEMEEALR-------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARG 298 (618)
T ss_dssp HHHHHHHHHTT-------TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHH
T ss_pred HHHHHHHHHhc-------CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHH
Confidence 55544444332 2234443322 223345667778999999998888888999999999999986555555566
Q ss_pred HHHHHHHhCCCCEEEEEcCcccHHHHHhhhc-CCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEE
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEAEKFQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILV 284 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~~~~~~~f~-~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 284 (727)
.+...... ++.++++||||++.. ...++. +.+.+.+... +....... ++..+. +..+++||
T Consensus 299 ~i~~~l~~-~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-------~~~~~~~~----ll~~l~-----~~~~~~LV 360 (618)
T 2whx_A 299 YISTRVEM-GEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-------IPERSWNT----GFDWIT-----DYQGKTVW 360 (618)
T ss_dssp HHHHHHHH-TSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-------CCSSCCSS----SCHHHH-----HCCSCEEE
T ss_pred HHHHHhcc-cCccEEEEECCCchh-hhhhhccCCceeeeccc-------CCHHHHHH----HHHHHH-----hCCCCEEE
Confidence 66555433 479999999999643 112222 2233333221 11111111 111111 13679999
Q ss_pred ecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCe
Q 004850 285 FLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI 364 (727)
Q Consensus 285 Fl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V 364 (727)
|++++++++.+++.|... ++.+..+||+ +|.++++.|++| ..+||||||++|+||||| |
T Consensus 361 F~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g-------~~~VLVaTdv~~rGiDi~-v 419 (618)
T 2whx_A 361 FVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLT-------DWDFVVTTDISEMGANFR-A 419 (618)
T ss_dssp ECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHS-------CCSEEEECGGGGTTCCCC-C
T ss_pred EECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCC-------CcEEEEECcHHHcCcccC-c
Confidence 999999999999999874 5789999984 688899999998 899999999999999997 9
Q ss_pred EEEEcCCCccceee--ccccCccccccccccHhhHHhhhcccCCCC--CceEEEecch
Q 004850 365 VYVIDPGFAKQKVY--NPRVRVESLLVSPISKASAHQRSGRAGRTQ--PGKCFRLYTE 418 (727)
Q Consensus 365 ~~VId~g~~k~~~~--~~~~~~~~l~~~pis~~~~~qR~GRaGR~~--~G~~~~L~t~ 418 (727)
++|||+|+.+.+++ +...++......|.|.++|+||+|||||.+ +|.||.|+++
T Consensus 420 ~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 420 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 99999999877765 444556677777999999999999999993 8999999983
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.5e-34 Score=326.56 Aligned_cols=329 Identities=16% Similarity=0.195 Sum_probs=236.8
Q ss_pred CCCCCCCCChHHHHHHHH-hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEc
Q 004850 44 NRWNGKPYSQRYYEILEK-RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~-~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (727)
..|+++++++.+.+.+++ .++..++++|.++++.+.+|+++++++|||||||+.+..+.+... +. .++.
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~---------g~-~lvi 71 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN---------GL-TVVV 71 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS---------SE-EEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC---------CC-EEEE
Confidence 469999999999999988 688889999999999999999999999999999997766665321 22 2233
Q ss_pred ccchhhhccHHHHHHHhccccccceeceeeee------ccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCc
Q 004850 123 QPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF------EDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHE 195 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~------~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEahe 195 (727)
.|++..+.+..+.+.. .+.......|..... .........+.++||+++......+.+ ..++++||+||||.
T Consensus 72 ~P~~aL~~q~~~~l~~-~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 72 SPLISLMKDQVDQLQA-NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp CSCHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred CChHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 4555555555555543 233322211211100 011122467889999998532211111 47889999999996
Q ss_pred ChhhH---HHHHHHHHHHHHhCCCCEEEEEcCcccHH---HHHhhhc-CCCeeeeCCCccceeeeeccCCcccHHHHHHH
Q 004850 196 RTLAT---DVLFGLLKEVLKNRPDLKLVVMSATLEAE---KFQGYFY-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIR 268 (727)
Q Consensus 196 r~~~~---d~ll~ll~~l~~~~~~~~vil~SATl~~~---~~~~~f~-~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~ 268 (727)
.+... ...+..+..+....|+.+++++|||.+.. .+.+++. ..|.+.+.+...| ...|...+..+....+..
T Consensus 151 i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~l~~ 229 (523)
T 1oyw_A 151 ISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLDQLMR 229 (523)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHHHHHH
T ss_pred cCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHHHHHH
Confidence 33211 11233445556667789999999999753 3444443 4566655554333 223332233344444333
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 004850 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (727)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (727)
. ......+++|||++++++++.+++.|... ++.+..+||+|++++|.++++.|..| ..+|
T Consensus 230 ~----l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g-------~~~v 289 (523)
T 1oyw_A 230 Y----VQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQRD-------DLQI 289 (523)
T ss_dssp H----HHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTT-------SCSE
T ss_pred H----HHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcC-------CCeE
Confidence 3 23345678999999999999999999874 67899999999999999999999998 8899
Q ss_pred EEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhhc
Q 004850 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSFN 422 (727)
Q Consensus 349 lvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~~ 422 (727)
||||+++++|||+|+|++||++|+ |.|.++|.||+|||||. .+|.|+.+|+..+..
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 999999999999999999999999 99999999999999999 799999999988764
No 28
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-35 Score=332.64 Aligned_cols=340 Identities=18% Similarity=0.226 Sum_probs=199.0
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEE
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIAC 121 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~ 121 (727)
..|...++++.+.+.+...++..++++|.++++.+.+| +++++.||||||||+++..+++.... ......+ +++
T Consensus 119 ~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~-~~~~~~~---vLv 194 (508)
T 3fho_A 119 XXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD-ASVPKPQ---AIC 194 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSC-TTCCSCC---EEE
T ss_pred ccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHH-hCCCCce---EEE
Confidence 34566677888888888889888999999999999998 99999999999999998877775431 1111122 334
Q ss_pred cccchhhhccHHHHHHHhccc-cccceeceeeeeccccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhh
Q 004850 122 TQPRRVAAMSVSRRVAEEMDV-TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLA 199 (727)
Q Consensus 122 t~p~~~~~~~v~~~v~~~~~~-~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~ 199 (727)
..|++..+.++++++.+.... .+....++..........+..|.++|++.+...+..... +.++++||+||+|.....
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc
Confidence 445555555555555543321 111122222111122223578899999999988776654 889999999999953221
Q ss_pred HHHHHHHHHHHHH-hCCCCEEEEEcCccc--HHHHHhhhcCC-CeeeeCCCcc---ceeeeeccCCcccHHHHHHHHHHH
Q 004850 200 TDVLFGLLKEVLK-NRPDLKLVVMSATLE--AEKFQGYFYGA-PLMKVPGRLH---PVEIFYTQEPERDYLEAAIRTVVQ 272 (727)
Q Consensus 200 ~d~ll~ll~~l~~-~~~~~~vil~SATl~--~~~~~~~f~~~-p~i~v~g~~~---~v~~~y~~~~~~~~~~~~~~~l~~ 272 (727)
.+ +...+..+.. ..++.+++++|||++ .+.+...+... ..+.+..... .+...+......+. ....+..
T Consensus 275 ~~-~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~ 350 (508)
T 3fho_A 275 QG-LGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH---KYNVLVE 350 (508)
T ss_dssp ---CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH---HHHHHHH
T ss_pred CC-cHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH---HHHHHHH
Confidence 22 2233333333 334789999999996 45555554443 3343433322 23334433322221 2233444
Q ss_pred HhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec
Q 004850 273 IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (727)
Q Consensus 273 i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT 352 (727)
+......+++|||++++++++.++..|.+. ++.+..+||++++.+|..+++.|++| ..+|||||
T Consensus 351 ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g-------~~~VLVaT 414 (508)
T 3fho_A 351 LYGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVG-------TSKVLVTT 414 (508)
T ss_dssp HHC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSS-------SCCCCEEC
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCC-------CCeEEEeC
Confidence 444456789999999999999999988753 57789999999999999999999998 88999999
Q ss_pred CccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchh
Q 004850 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEK 419 (727)
Q Consensus 353 niAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~ 419 (727)
+++++|||+|++++||++|....... ..|..+|+||+|||||. ++|.|+.|++..
T Consensus 415 ~~l~~GiDip~v~~VI~~~~p~~~~~------------~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 415 NVIARGIDVSQVNLVVNYDMPLDQAG------------RPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp C-----CCCTTCCEEEC----CC-----------------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ChhhcCCCccCCCEEEEECCCCcccC------------CCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 99999999999999999998111100 17889999999999999 789999999854
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-34 Score=349.74 Aligned_cols=380 Identities=16% Similarity=0.177 Sum_probs=248.7
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc-ccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM-DVT 143 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-~~~ 143 (727)
.+++++|.++++.+.+|++++++||||||||+.+..++.... . .+..++++.|++..+.++++++.+.. +..
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--~-----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~ 110 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--R-----NMTKTIYTSPIKALSNQKFRDFKETFDDVN 110 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--H-----TTCEEEEEESCGGGHHHHHHHHHTTC--CC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--h-----cCCeEEEEeCCHHHHHHHHHHHHHHcCCCe
Confidence 357999999999999999999999999999987554443321 0 12235566777777778888887754 334
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
++...|.. .......+.++|+|++...+.... .+.++++||+|||| +..+.++-......+....++.++|++
T Consensus 111 v~~l~G~~-----~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 111 IGLITGDV-----QINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp EEEECSSC-----EECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred EEEEeCCC-----ccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEE
Confidence 44444422 123457889999999988887655 48899999999999 455543321122222233458999999
Q ss_pred cCcc-cHHHHHhhhc-----CCCeeeeCCCccceeeeeccCCc--------cc-----H---------------------
Q 004850 223 SATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEPE--------RD-----Y--------------------- 262 (727)
Q Consensus 223 SATl-~~~~~~~~f~-----~~p~i~v~g~~~~v~~~y~~~~~--------~~-----~--------------------- 262 (727)
|||+ +...|++|+. ...++..+++..|+.+++..... .. +
T Consensus 185 SAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (997)
T 4a4z_A 185 SATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDN 264 (997)
T ss_dssp ECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------
T ss_pred cCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccc
Confidence 9999 6788888875 23356667777777765532100 00 0
Q ss_pred -------------------------------------------------------HHHHHHHHHHHhhcCCCCCEEEecC
Q 004850 263 -------------------------------------------------------LEAAIRTVVQIHMCEPSGDILVFLT 287 (727)
Q Consensus 263 -------------------------------------------------------~~~~~~~l~~i~~~~~~g~iLVFl~ 287 (727)
....+..+.........+++|||++
T Consensus 265 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~ 344 (997)
T 4a4z_A 265 GRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVF 344 (997)
T ss_dssp ----------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEEC
Confidence 0011233444445556789999999
Q ss_pred CHHHHHHHHHHHHHHHh------------------hcCC------------CCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 004850 288 GEEEIEDACRKITKEIT------------------NMGD------------QVGPVKVVPLYSTLPPAMQQKIFEPAPPP 337 (727)
Q Consensus 288 ~~~ei~~l~~~L~~~~~------------------~~~~------------~~~~~~v~~lh~~l~~~~r~~~~~~~~~g 337 (727)
++++++.++..|..... .+.. ......+.++||+|++.+|..+++.|..|
T Consensus 345 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G 424 (997)
T 4a4z_A 345 SKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 424 (997)
T ss_dssp CHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC
Confidence 99999999988853100 0000 00011378999999999999999999999
Q ss_pred CCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCC---CceEEE
Q 004850 338 SKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFR 414 (727)
Q Consensus 338 ~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~---~G~~~~ 414 (727)
..+|||||+++++|||+|+ ++||.+++.+ ||+.. ..|+|.++|+||+|||||.+ .|.||.
T Consensus 425 -------~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 425 -------FIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp -------CCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred -------CCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 8999999999999999999 5555556543 55442 22999999999999999974 899999
Q ss_pred ecchhhhccc-CCC--CCCCcccccC------chhhHHHHHHcCCCCcccccCCCCCcHHHHHHHHHHH
Q 004850 415 LYTEKSFNND-LQP--QTYPEILRSN------LANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVL 474 (727)
Q Consensus 415 L~t~~~~~~~-l~~--~~~pei~r~~------l~~~~L~lk~~~~~~~~~~~~~~~P~~~~i~~a~~~L 474 (727)
++........ +.. ...|+.+++. +...+|++...++.++..+.|.+.+....+......|
T Consensus 488 l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l 556 (997)
T 4a4z_A 488 MAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQI 556 (997)
T ss_dssp ECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9953211110 111 1235555552 3333344444455555556666555544444333333
No 30
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.2e-33 Score=325.92 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=209.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (727)
..+|++++++||||||||+.+.+.+.... .++ +..|++..+.++++++.+ .+..++..+|....
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l~~~~--------~gl---~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~---- 215 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKYFSAK--------SGV---YCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERV---- 215 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHSS--------SEE---EEESSHHHHHHHHHHHHH-TTCCEEEECSSCEE----
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC--------CeE---EEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeE----
Confidence 35789999999999999997766665432 132 236777888888888755 35555555554322
Q ss_pred cccCccccccChHHHHHHHhcc----ccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC-CCCEEEEEcCcccH-HHH
Q 004850 158 SSARTVLKYLTDGMLLREAMTD----PLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA-EKF 231 (727)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~----~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~-~~~~vil~SATl~~-~~~ 231 (727)
...|+|+..+++... .+...++++|+||+|+ ..+.++-..+...+.... ++.+++++|||.+. ..+
T Consensus 216 -------iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~-l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l 287 (677)
T 3rc3_A 216 -------TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQM-IRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMEL 287 (677)
T ss_dssp -------CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGG-GGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHH
T ss_pred -------EecCCCcccceeEecHhHhhhcccCCEEEEeccee-cCCccchHHHHHHHHccCccceEEEeccchHHHHHHH
Confidence 223333332222211 2457789999999996 455554444444444433 47899999999753 334
Q ss_pred HhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCC
Q 004850 232 QGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVG 311 (727)
Q Consensus 232 ~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~ 311 (727)
....+....+....+..+.. +...... .......|+ +||++++++++.+++.|...
T Consensus 288 ~~~~~~~~~v~~~~r~~~l~--~~~~~l~------------~l~~~~~g~-iIf~~s~~~ie~la~~L~~~--------- 343 (677)
T 3rc3_A 288 MYTTGEEVEVRDYKRLTPIS--VLDHALE------------SLDNLRPGD-CIVCFSKNDIYSVSRQIEIR--------- 343 (677)
T ss_dssp HHHHTCCEEEEECCCSSCEE--ECSSCCC------------SGGGCCTTE-EEECSSHHHHHHHHHHHHHT---------
T ss_pred HHhcCCceEEEEeeecchHH--HHHHHHH------------HHHhcCCCC-EEEEcCHHHHHHHHHHHHhc---------
Confidence 43332221111111211211 1111100 011123444 67788899999999999874
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCC--CCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccc
Q 004850 312 PVKVVPLYSTLPPAMQQKIFEPAPP--PSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (727)
Q Consensus 312 ~~~v~~lh~~l~~~~r~~~~~~~~~--g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~ 389 (727)
++.+.++||+|++++|.++++.|.+ | .++||||||++|+|||| +|++|||+|+.|. .||+..+. . .
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g-------~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~ 411 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPND-------PCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--L 411 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTS-------SCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCC-------CeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--c
Confidence 5789999999999999999988887 6 78999999999999999 8999999999988 88887433 2 4
Q ss_pred ccccHhhHHhhhcccCCCC----CceEEEecchh--hhcccCCCCCCCcccccCchhhHHHHHHcC
Q 004850 390 SPISKASAHQRSGRAGRTQ----PGKCFRLYTEK--SFNNDLQPQTYPEILRSNLANTVLTLKKLG 449 (727)
Q Consensus 390 ~pis~~~~~qR~GRaGR~~----~G~~~~L~t~~--~~~~~l~~~~~pei~r~~l~~~~L~lk~~~ 449 (727)
.|+|.++|.||+|||||.+ +|.||++++++ .+.. +.....|+|.+.++....++++.++
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHh
Confidence 5999999999999999995 59999999876 4544 6778889999999988888888776
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.8e-33 Score=311.86 Aligned_cols=312 Identities=14% Similarity=0.116 Sum_probs=208.2
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHH
Q 004850 54 RYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVS 133 (727)
Q Consensus 54 ~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~ 133 (727)
.+.+.+++.....++++|.++++.+.+|+++++.+|||||||+++..+++... . ...+.++++|++++..+.....
T Consensus 9 ~~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~--~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--R--KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--T--TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--c--CCCEEEEEECCHHHHHHHHHHH
Confidence 44556666555578999999999999999999999999999997766555422 0 1123455565555555444444
Q ss_pred HHHHHhccccccceeceeee---e---ccccccCccccccChHHHHHHHhccccccCCeeEEeeccCc---------Chh
Q 004850 134 RRVAEEMDVTIGEEVGYSIR---F---EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE---------RTL 198 (727)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~---~---~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEahe---------r~~ 198 (727)
+.+.. .+..++...|.... . .........|.++|+|++.+.+.. ..+.++++||+||||. +++
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHH
Confidence 43333 34444444443211 0 011112378899999999876543 3467999999999993 223
Q ss_pred h-HHHHHHHHHHHHHh------------CCCCEEEEEcCcc-cH---HHHHhhhcCCCeeeeCCCccceeeeeccCCccc
Q 004850 199 A-TDVLFGLLKEVLKN------------RPDLKLVVMSATL-EA---EKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERD 261 (727)
Q Consensus 199 ~-~d~ll~ll~~l~~~------------~~~~~vil~SATl-~~---~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~ 261 (727)
+ .++.-..+..+... .++.+++++|||+ +. ..+...+.+..+.........+.+.|......+
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 242 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKE 242 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHH
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeeccCHHH
Confidence 2 22221212222221 1578999999994 32 123322222222112222334666666554332
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE-EecCCCCHHHHhhhcCCCCCCCCC
Q 004850 262 YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV-PLYSTLPPAMQQKIFEPAPPPSKE 340 (727)
Q Consensus 262 ~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~~~~~~~~g~~~ 340 (727)
.+...+.. .++++|||++++++++.+++.|... ++.+. .+||. +|. ++.|++|
T Consensus 243 ---~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r~--~~~f~~g--- 296 (414)
T 3oiy_A 243 ---KLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EKN--FEDFKVG--- 296 (414)
T ss_dssp ---HHHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HHH--HHHHHTT---
T ss_pred ---HHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----chH--HHHHhCC---
Confidence 23332222 2378999999999999999999874 57787 89984 333 8889988
Q ss_pred CCCCCcEEEEe----cCccccCcccCC-eEEEEcCCCccceeeccccCcccccccc--ccHhhHHhhhcccCCCC-----
Q 004850 341 GGPPGRKIVVS----TNIAETSLTIDG-IVYVIDPGFAKQKVYNPRVRVESLLVSP--ISKASAHQRSGRAGRTQ----- 408 (727)
Q Consensus 341 ~~~~~~kvlva----TniAe~gitIp~-V~~VId~g~~k~~~~~~~~~~~~l~~~p--is~~~~~qR~GRaGR~~----- 408 (727)
..+|||| ||++++|||+|+ |++||++|+ | .|.++|+||+|||||.+
T Consensus 297 ----~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~g~~~~~ 354 (414)
T 3oiy_A 297 ----KINILIGVQAYYGKLTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRILNGVLV 354 (414)
T ss_dssp ----SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCEETTEEC
T ss_pred ----CCeEEEEecCcCchhhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccCCCCCCc
Confidence 8899999 999999999999 999999999 8 89999999999999983
Q ss_pred CceEEEecchh
Q 004850 409 PGKCFRLYTEK 419 (727)
Q Consensus 409 ~G~~~~L~t~~ 419 (727)
+|.||.|+.+.
T Consensus 355 ~g~~i~~~~~~ 365 (414)
T 3oiy_A 355 KGVSVIFEEDE 365 (414)
T ss_dssp CEEEEEECCCH
T ss_pred ceEEEEEEccH
Confidence 79999999543
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.5e-31 Score=332.05 Aligned_cols=463 Identities=14% Similarity=0.108 Sum_probs=295.0
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhh-cCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhcc
Q 004850 53 QRYYEILEKRKSLPVWQQKEEFLQVLK-ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMS 131 (727)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~ii~~i~-~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~ 131 (727)
+...+.+...++...+++|.++++.+. .++++++.||||||||+++-.+++....-.. +..+++..|.+..+.+
T Consensus 913 ~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 913 NSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----EGRCVYITPMEALAEQ 987 (1724)
T ss_dssp CHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----TCCEEEECSCHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----CCEEEEEcChHHHHHH
Confidence 334444445567778999999999985 5678999999999999988877765431111 1124555677666666
Q ss_pred HHHHHHHhccccccceeceee---eeccccccCccccccChHHHHHHHh---ccccccCCeeEEeeccCcChhhH----H
Q 004850 132 VSRRVAEEMDVTIGEEVGYSI---RFEDCSSARTVLKYLTDGMLLREAM---TDPLLERYKVIVLDEAHERTLAT----D 201 (727)
Q Consensus 132 v~~~v~~~~~~~~~~~vg~~~---~~~~~~~~~~~i~~lT~G~l~r~~~---~~~ll~~~~~lIlDEaher~~~~----d 201 (727)
.++.+.+.++...+..|+... ..+.....+..|.++|||++..++. .+..+.++++||+||+|.-.-.. .
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le 1067 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1067 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHH
Confidence 666665544433333333211 1111112356789999999755443 23358999999999999422122 2
Q ss_pred HHHHHHHHHHHh-CCCCEEEEEcCcc-cHHHHHhhhcCC--CeeeeCC--CccceeeeeccCCcccH---HHHHHHHHHH
Q 004850 202 VLFGLLKEVLKN-RPDLKLVVMSATL-EAEKFQGYFYGA--PLMKVPG--RLHPVEIFYTQEPERDY---LEAAIRTVVQ 272 (727)
Q Consensus 202 ~ll~ll~~l~~~-~~~~~vil~SATl-~~~~~~~~f~~~--p~i~v~g--~~~~v~~~y~~~~~~~~---~~~~~~~l~~ 272 (727)
.++..++.+... .++.|+|++|||+ |++.+++|++.. .+..+.. |..|++.+....+.... .......+..
T Consensus 1068 ~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~ 1147 (1724)
T 4f92_B 1068 VICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYH 1147 (1724)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHH
Confidence 233444444433 3478999999999 789999998643 2333333 44445544432222221 1111111111
Q ss_pred -HhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCC-------------------------CCeEEEEecCCCCHHH
Q 004850 273 -IHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQV-------------------------GPVKVVPLYSTLPPAM 326 (727)
Q Consensus 273 -i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~-------------------------~~~~v~~lh~~l~~~~ 326 (727)
+....+.+++|||++++..++.++..|........... -...+..+||+|++.+
T Consensus 1148 ~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~ 1227 (1724)
T 4f92_B 1148 AITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPME 1227 (1724)
T ss_dssp HHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHH
T ss_pred HHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHH
Confidence 22234577999999999999999888765432110000 0123788999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCC
Q 004850 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGR 406 (727)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR 406 (727)
|..+.+.|++| ..+|||||+.+++|||+|.+.+||... ..||...+. ..|.+..+|.||+|||||
T Consensus 1228 R~~VE~lF~~G-------~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~~----~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1228 RRLVEQLFSSG-------AIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIHA----YVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HHHHHHHHHHT-------SBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTTTE----EEECCHHHHHHHHTTBCC
T ss_pred HHHHHHHHHCC-------CCeEEEEChHHHcCCCCCccEEEEecC----ccccCcccc----cCCCCHHHHHHhhccccC
Confidence 99999999999 899999999999999999999999743 356654321 238899999999999999
Q ss_pred CC---CceEEEecchhhhcccCCCCCCCcccccCc----hhhHHHHHHcCC-CCccc-ccC------------------C
Q 004850 407 TQ---PGKCFRLYTEKSFNNDLQPQTYPEILRSNL----ANTVLTLKKLGI-DDLVH-FDF------------------M 459 (727)
Q Consensus 407 ~~---~G~~~~L~t~~~~~~~l~~~~~pei~r~~l----~~~~L~lk~~~~-~~~~~-~~~------------------~ 459 (727)
.+ .|.|+.+..+.+......-...|+...+.| .+.++.....|. .+..+ .+| +
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l 1372 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTC
T ss_pred CCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccc
Confidence 83 699999987654322101112233344444 334444333332 11100 011 1
Q ss_pred --------CCCcHHHHHHHHHHHHHcCCcC--CCC--CcchhhhhhccCCCChhhhhHHhhcCCCCCh-HHHHHHHHHhc
Q 004850 460 --------DPPAPETLMRALEVLNYLGALD--DDG--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSISAMLS 526 (727)
Q Consensus 460 --------~~P~~~~i~~a~~~L~~lgald--~~~--~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~-~~~l~i~a~ls 526 (727)
+..-.+.++.+++.|...|+|. +++ ..|++|+.++.++++|.-++++..+....+. ..++.+.|..+
T Consensus 1373 ~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ 1452 (1724)
T 4f92_B 1373 QGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAA 1452 (1724)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCc
Confidence 1122345778999999999994 444 4699999999999999999999988776663 55666666443
Q ss_pred C-CCCCCCch
Q 004850 527 V-PNCFVRPR 535 (727)
Q Consensus 527 ~-~~~f~~~~ 535 (727)
. .++..+..
T Consensus 1453 ef~~i~~R~~ 1462 (1724)
T 4f92_B 1453 EYENIPIRHH 1462 (1724)
T ss_dssp GGTTCCCCTT
T ss_pred cccccccccc
Confidence 3 34444443
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1e-32 Score=316.65 Aligned_cols=333 Identities=14% Similarity=0.141 Sum_probs=176.8
Q ss_pred cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
+...++++|.++++.+..|+++++.+|||||||.++..++++...... ....+.++++|+.++..+.....+.+....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 456789999999999999999999999999999998877765431111 0123355666777777777776666666556
Q ss_pred ccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcChhhHHHHHHHHHHHHHh----
Q 004850 142 VTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN---- 213 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~---- 213 (727)
..++...|........ ......|.++|+|++.+.+....+ +.++++||+||||. ..+......++..+...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGG-CSTTSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcc-cCCcchHHHHHHHHHHhhhcc
Confidence 6665555543221111 112467889999999998876553 88999999999995 34333444444444432
Q ss_pred -CCCCEEEEEcCcccH----------H---HHHhhhcCCCeeeeCCC---------ccceeee--ecc-C----------
Q 004850 214 -RPDLKLVVMSATLEA----------E---KFQGYFYGAPLMKVPGR---------LHPVEIF--YTQ-E---------- 257 (727)
Q Consensus 214 -~~~~~vil~SATl~~----------~---~~~~~f~~~p~i~v~g~---------~~~v~~~--y~~-~---------- 257 (727)
.+..+++++|||... + .+...+. ...+..... ..|.... +.. .
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcC-CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 356899999999921 1 1112221 111111110 0000000 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 004850 258 -------------------------------------------------------------------------------- 257 (727)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (727)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------CcccHHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 004850 258 -----------------------------------------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEE 290 (727)
Q Consensus 258 -----------------------------------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 290 (727)
....++..+...+.......+.+++|||+++++
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 001122222222222222256789999999999
Q ss_pred HHHHHHHHHHHHHh--hcCC-CCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEecCccccCcccCCeEE
Q 004850 291 EIEDACRKITKEIT--NMGD-QVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (727)
Q Consensus 291 ei~~l~~~L~~~~~--~~~~-~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvlvaTniAe~gitIp~V~~ 366 (727)
.++.+++.|..... .+.. ...+.....+||+|++.+|.++++.|+. | ..+|||||+++++|||+|+|++
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g-------~~~vLvaT~~~~~GiDip~v~~ 474 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-------DNRLLIATSVADEGIDIVQCNL 474 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC-------------------------------------CCEEEEEC-----------CE
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccC-------ceEEEEEcCchhcCCCchhCCE
Confidence 99999999975310 0000 0113455677899999999999999999 7 7899999999999999999999
Q ss_pred EEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhcc
Q 004850 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN 423 (727)
Q Consensus 367 VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~ 423 (727)
||++|+ |-+..+|+||+|| ||.++|.||.|+++.+...
T Consensus 475 VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 475 VVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp EEEETC------------------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred EEEeCC------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 999999 9999999999999 9999999999999877643
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=5.6e-33 Score=318.43 Aligned_cols=330 Identities=16% Similarity=0.161 Sum_probs=200.9
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
..++++|.++++.+..|+++++.+|||||||.++..++++...-.. ....+.++++|+.++..+....++.+....+..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 4678999999999999999999999999999998877765431111 112345666777777777777777766666666
Q ss_pred ccceeceeeeeccc--cccCccccccChHHHHHHHhccc--cccCCeeEEeeccCcChhhHHHHHHHHHHHHHh------
Q 004850 144 IGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHERTLATDVLFGLLKEVLKN------ 213 (727)
Q Consensus 144 ~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~------ 213 (727)
++...|........ ......|.++|+|++.+.+.... .+.++++||+||||.. .+......++..+...
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNT-SKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGC-STTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcccc-CCcchHHHHHHHHHHhhhcccc
Confidence 65555543211110 11246788999999999887655 3788999999999953 3333344444444332
Q ss_pred CCCCEEEEEcCcccH----------HHHH---hhhcCCCeeeeCCC---------ccceeee-eccC-C-----------
Q 004850 214 RPDLKLVVMSATLEA----------EKFQ---GYFYGAPLMKVPGR---------LHPVEIF-YTQE-P----------- 258 (727)
Q Consensus 214 ~~~~~vil~SATl~~----------~~~~---~~f~~~p~i~v~g~---------~~~v~~~-y~~~-~----------- 258 (727)
.+..+++++|||... +.+. ..+ +.+.+..... ..|.... .... .
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 146799999999932 1111 111 2222222110 0000000 0000 0
Q ss_pred --------------------------------------------------------------------------------
Q 004850 259 -------------------------------------------------------------------------------- 258 (727)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (727)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred ------------------------------------------------cccHHHHHHHHHHHHhhcCCCCCEEEecCCHH
Q 004850 259 ------------------------------------------------ERDYLEAAIRTVVQIHMCEPSGDILVFLTGEE 290 (727)
Q Consensus 259 ------------------------------------------------~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ 290 (727)
...++..+...+.......+.+++|||+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 01122222223333333345689999999999
Q ss_pred HHHHHHHHHHHHHhhcC---CCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEecCccccCcccCCeEE
Q 004850 291 EIEDACRKITKEITNMG---DQVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGIVY 366 (727)
Q Consensus 291 ei~~l~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvlvaTniAe~gitIp~V~~ 366 (727)
.++.+++.|........ ....+.....+||+|++.+|.++++.|++ | ..+|||||+++++|||+|+|++
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g-------~~~vLvaT~~~~~GlDlp~v~~ 473 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASG-------DNNILIATSVADEGIDIAECNL 473 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC---------------------------------CCSEEEECCCTTCCEETTSCSE
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCC-------CeeEEEEcchhhcCCccccCCE
Confidence 99999999986411000 00113445667789999999999999998 7 7899999999999999999999
Q ss_pred EEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhc
Q 004850 367 VIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (727)
Q Consensus 367 VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~ 422 (727)
||++|+ |-+..+|+||+|| ||.++|.||.|+++.+..
T Consensus 474 VI~~d~------------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 474 VILYEY------------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp EEEESC------------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred EEEeCC------------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 999998 8999999999999 999999999999987654
No 35
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=5.2e-32 Score=302.27 Aligned_cols=289 Identities=20% Similarity=0.233 Sum_probs=191.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeee-c
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-E 155 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~ 155 (727)
++.+|++++++||||||||+++..+++.... .. ..+.++++ |++..+.++++.+.. . .+++.... .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~-~~--~~~~lil~---Ptr~La~Q~~~~l~~---~----~v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECA-RR--RLRTLVLA---PTRVVLSEMKEAFHG---L----DVKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HT--TCCEEEEE---SSHHHHHHHHHHTTT---S----CEEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHH-hc--CCeEEEEc---chHHHHHHHHHHHhc---C----CeEEecccce
Confidence 5678999999999999999998777665321 11 12344444 444444444444321 1 12222111 1
Q ss_pred cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhh
Q 004850 156 DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (727)
Q Consensus 156 ~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f 235 (727)
........+..++.|.+...+.....+.++++||+||+|......+..++.+..+.. .++.++++||||++... ..+.
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~ 148 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFP 148 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSC
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhh
Confidence 122234445567888877777777678999999999999754444455666666554 34789999999995431 1111
Q ss_pred c-CCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 004850 236 Y-GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 314 (727)
Q Consensus 236 ~-~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~ 314 (727)
. ..++. .+...+........ +..+.+ ..+++|||||++++++.+++.|... ++.
T Consensus 149 ~~~~~~~-------~~~~~~~~~~~~~~----~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~ 203 (440)
T 1yks_A 149 HSNGEIE-------DVQTDIPSEPWNTG----HDWILA-----DKRPTAWFLPSIRAANVMAASLRKA---------GKS 203 (440)
T ss_dssp CCSSCEE-------EEECCCCSSCCSSS----CHHHHH-----CCSCEEEECSCHHHHHHHHHHHHHT---------TCC
T ss_pred hcCCCee-------EeeeccChHHHHHH----HHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHHc---------CCC
Confidence 1 11211 11111111111111 111111 3678999999999999999999874 578
Q ss_pred EEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceee-ccccCcccccccccc
Q 004850 315 VVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVY-NPRVRVESLLVSPIS 393 (727)
Q Consensus 315 v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~-~~~~~~~~l~~~pis 393 (727)
+..+|| ++|.++++.|++| ..+||||||++|+||||| |++|||+|+.+.++| ++..++......|.+
T Consensus 204 v~~lhg----~~R~~~~~~F~~g-------~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQK-------KPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp EEECCS----SSCC--------C-------CCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEecc----hhHHHHHhhhcCC-------CceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 999999 5788999999999 899999999999999999 999999999988877 555566666677999
Q ss_pred HhhHHhhhcccCCC--CCceEEEecc
Q 004850 394 KASAHQRSGRAGRT--QPGKCFRLYT 417 (727)
Q Consensus 394 ~~~~~qR~GRaGR~--~~G~~~~L~t 417 (727)
.++|.||+|||||. ++|.||.||+
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHHHHhccccCCCCCCCceEEEEec
Confidence 99999999999997 5899999985
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=6.9e-32 Score=314.17 Aligned_cols=300 Identities=20% Similarity=0.238 Sum_probs=207.9
Q ss_pred CchHHHH-----HHHHhhh------cCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHH
Q 004850 66 PVWQQKE-----EFLQVLK------ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSR 134 (727)
Q Consensus 66 p~~~~q~-----~ii~~i~------~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~ 134 (727)
.++++|+ +.|+.+. .|++++++|+||||||+++..+++..... . ..+.++++ |++..+.++++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~--~~~~lila---PTr~La~Q~~~ 288 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-K--RLRTAVLA---PTRVVAAEMAE 288 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-T--TCCEEEEE---SSHHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-C--CCcEEEEc---cHHHHHHHHHH
Confidence 5677777 8888877 99999999999999999987766654211 1 12244444 55544444444
Q ss_pred HHHHhccccccceeceeeee-ccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHh
Q 004850 135 RVAEEMDVTIGEEVGYSIRF-EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~-~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~ 213 (727)
.+.. . .+++.... .........+.+++.|.+.+.++.+..+.++++||+||+|......+..+..+..+...
T Consensus 289 ~l~~---~----~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~ 361 (673)
T 2wv9_A 289 ALRG---L----PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA 361 (673)
T ss_dssp HTTT---S----CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHhc---C----CeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc
Confidence 4431 1 12222111 11223445566788998888888777799999999999997645555566666666542
Q ss_pred CCCCEEEEEcCcccHHHHHhhh-cCCCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 004850 214 RPDLKLVVMSATLEAEKFQGYF-YGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI 292 (727)
Q Consensus 214 ~~~~~vil~SATl~~~~~~~~f-~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei 292 (727)
++.++++||||++... ..+. ...|+..+... +........ +..+ . +..+++|||+|+++++
T Consensus 362 -~~~~vl~~SAT~~~~i-~~~~~~~~~i~~v~~~-------~~~~~~~~~----l~~l---~--~~~~~~lVF~~s~~~~ 423 (673)
T 2wv9_A 362 -GEAAAIFMTATPPGTS-DPFPDTNSPVHDVSSE-------IPDRAWSSG----FEWI---T--DYAGKTVWFVASVKMS 423 (673)
T ss_dssp -TSCEEEEECSSCTTCC-CSSCCCSSCEEEEECC-------CCSSCCSSC----CHHH---H--SCCSCEEEECSSHHHH
T ss_pred -cCCcEEEEcCCCChhh-hhhcccCCceEEEeee-------cCHHHHHHH----HHHH---H--hCCCCEEEEECCHHHH
Confidence 4789999999996321 1111 12233222211 111111111 1111 1 2477999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCC
Q 004850 293 EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGF 372 (727)
Q Consensus 293 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~ 372 (727)
+.+++.|... ++.+..+||+ +|.++++.|++| ..+||||||++|+||||| |++|||+|.
T Consensus 424 e~la~~L~~~---------g~~v~~lHg~----eR~~v~~~F~~g-------~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 424 NEIAQCLQRA---------GKRVIQLNRK----SYDTEYPKCKNG-------DWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp HHHHHHHHTT---------TCCEEEECSS----SHHHHGGGGGTC-------CCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred HHHHHHHHhC---------CCeEEEeChH----HHHHHHHHHHCC-------CceEEEECchhhcceeeC-CcEEEECCC
Confidence 9999999864 5789999993 788999999999 899999999999999999 999999997
Q ss_pred ccce--eeccccCccccccccccHhhHHhhhcccCCC--CCceEEEecc
Q 004850 373 AKQK--VYNPRVRVESLLVSPISKASAHQRSGRAGRT--QPGKCFRLYT 417 (727)
Q Consensus 373 ~k~~--~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~--~~G~~~~L~t 417 (727)
...+ .||+..++..+...|.|.++|.||+|||||. ++|.||.|+.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 6654 3677666666667799999999999999998 6899999985
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=4.1e-30 Score=324.79 Aligned_cols=455 Identities=18% Similarity=0.192 Sum_probs=290.9
Q ss_pred cCCCchHHHHHHHHhh-hcCCEEEEEcCCCChhhchhhHHHhcCcc----CCCccccCceEEEEcccchhhhccHHHHHH
Q 004850 63 KSLPVWQQKEEFLQVL-KANQVIILVGETGSGKTTQIPQFVLEGVD----IETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i-~~g~~vii~g~TGSGKTt~~~~~ll~~~~----~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
++..+.++|.++++.+ ..++++++++|||||||..+-.++++... ........+..++..-|.+..+.+..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 5667889999999975 56889999999999999987766654321 000001113345556677666666666665
Q ss_pred Hh---ccccccceeceeeeeccccccCccccccChHHHHHHHhcc----ccccCCeeEEeeccCcChhhHHHHHH-HHHH
Q 004850 138 EE---MDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTD----PLLERYKVIVLDEAHERTLATDVLFG-LLKE 209 (727)
Q Consensus 138 ~~---~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~----~ll~~~~~lIlDEaher~~~~d~ll~-ll~~ 209 (727)
+. .+..++...|... ........+.|.++||+.+ +.++.. ..+.++++||+||+|.-.-+.+..++ ++.+
T Consensus 156 ~~~~~~gi~V~~~tGd~~-~~~~~~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~r 233 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQ-LCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 233 (1724)
T ss_dssp HHHTTTTCCEEECCSSCS-SCCTTGGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCC-CCccccCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHH
Confidence 43 3445554455321 1111223578889999986 444432 24889999999999942212233222 2222
Q ss_pred ----HHHhCCCCEEEEEcCcc-cHHHHHhhhcCCC---eeeeCC--CccceeeeeccCCcccHH---HHHHHHHHHH-hh
Q 004850 210 ----VLKNRPDLKLVVMSATL-EAEKFQGYFYGAP---LMKVPG--RLHPVEIFYTQEPERDYL---EAAIRTVVQI-HM 275 (727)
Q Consensus 210 ----l~~~~~~~~vil~SATl-~~~~~~~~f~~~p---~i~v~g--~~~~v~~~y~~~~~~~~~---~~~~~~l~~i-~~ 275 (727)
.....++.|+|.+|||+ +.+.+++|+...+ +..+.. |.-|++.++......... ......+... ..
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 313 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIME 313 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHH
Confidence 22334589999999999 6889999987542 223333 334556655443332221 1111222222 22
Q ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCC----------------------------CCCeEEEEecCCCCHHHH
Q 004850 276 CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQ----------------------------VGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 276 ~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~----------------------------~~~~~v~~lh~~l~~~~r 327 (727)
....+++|||++++++++.+++.|.+........ .-...+..+||+|++++|
T Consensus 314 ~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 314 HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 2346789999999999999999987653221000 001237789999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
..+.+.|+.| ..+|||||+.+|.|||+|.+++||.. ...|||..|.. .|.|..+|.||+|||||.
T Consensus 394 ~~vE~~F~~G-------~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 394 TLVEDLFADK-------HIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRAGRP 458 (1724)
T ss_dssp HHHHHHHHTT-------CCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTBSCT
T ss_pred HHHHHHHHCC-------CCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHhhhhccCC
Confidence 9999999999 89999999999999999999999963 25688876532 389999999999999998
Q ss_pred C---CceEEEecchhhhcc---cCCCCCCCc-ccccCchhhHHHHHHcCC-CCccc------------------------
Q 004850 408 Q---PGKCFRLYTEKSFNN---DLQPQTYPE-ILRSNLANTVLTLKKLGI-DDLVH------------------------ 455 (727)
Q Consensus 408 ~---~G~~~~L~t~~~~~~---~l~~~~~pe-i~r~~l~~~~L~lk~~~~-~~~~~------------------------ 455 (727)
+ .|.+|.+.++.+... .+....+-| -+...+.+.++....+|. .+..+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~ 538 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGIS 538 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCC
T ss_pred CCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccC
Confidence 3 799999988754322 122111111 112233344443333331 11100
Q ss_pred ------ccCCCCCcHHHHHHHHHHHHHcCCcC--C-CC--CcchhhhhhccCCCChhhhhHHhhcCCCCCh-HHHHHHHH
Q 004850 456 ------FDFMDPPAPETLMRALEVLNYLGALD--D-DG--NLTEMGEKMSEFPLDPQMSKMLVESPKYNCS-NEILSISA 523 (727)
Q Consensus 456 ------~~~~~~P~~~~i~~a~~~L~~lgald--~-~~--~lT~lG~~l~~lPl~p~~~k~ll~~~~~~c~-~~~l~i~a 523 (727)
-+.++....+.+..|+..|...|.|. + +| ..|++|+.|+++.++|.-.+.+.....-.+. .+++.+.|
T Consensus 539 ~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is 618 (1724)
T 4f92_B 539 HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFS 618 (1724)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHh
Confidence 01111122345788999999999984 2 23 5799999999999999999999887766554 46676766
Q ss_pred HhcC-CCCCCCc
Q 004850 524 MLSV-PNCFVRP 534 (727)
Q Consensus 524 ~ls~-~~~f~~~ 534 (727)
+.+. .++..+.
T Consensus 619 ~s~ef~~i~~R~ 630 (1724)
T 4f92_B 619 LSSEFKNITVRE 630 (1724)
T ss_dssp TCGGGTTCCCCG
T ss_pred CChhhccCCcCH
Confidence 5553 4444443
No 38
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-31 Score=321.07 Aligned_cols=322 Identities=16% Similarity=0.185 Sum_probs=223.2
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
..++++|.++++.+..|+++++.||||||||+.+..+++.... . +..++++.|++..+.+.++.+....+ .+
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--~-----g~rvL~l~PtkaLa~Q~~~~l~~~~~-~v 156 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--N-----KQRVIYTSPIKALSNQKYRELLAEFG-DV 156 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--T-----TCEEEEEESSHHHHHHHHHHHHHHHS-CE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--c-----CCeEEEECChHHHHHHHHHHHHHHhC-CE
Confidence 3589999999999999999999999999999987766654321 1 12345556776666677777766554 33
Q ss_pred cceeceeeeeccccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhhH--HHHHHHHHHHHHhCCCCEEEE
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLAT--DVLFGLLKEVLKNRPDLKLVV 221 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~~--d~ll~ll~~l~~~~~~~~vil 221 (727)
+...|.. .......|.++|++++...+.... .+.++++||+||+|. ..+. +..+..+.. ...++.++|+
T Consensus 157 glltGd~-----~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~--~l~~~~~il~ 228 (1010)
T 2xgj_A 157 GLMTGDI-----TINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETII--LLPDKVRYVF 228 (1010)
T ss_dssp EEECSSC-----EECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHH--HSCTTCEEEE
T ss_pred EEEeCCC-----ccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHH--hcCCCCeEEE
Confidence 3333322 122356789999999988776554 589999999999994 3332 333332222 2234789999
Q ss_pred EcCcc-cHHHHHhhhc-----CCCeeeeCCCccceeeeeccCCc----------c----c-HH-----------------
Q 004850 222 MSATL-EAEKFQGYFY-----GAPLMKVPGRLHPVEIFYTQEPE----------R----D-YL----------------- 263 (727)
Q Consensus 222 ~SATl-~~~~~~~~f~-----~~p~i~v~g~~~~v~~~y~~~~~----------~----~-~~----------------- 263 (727)
+|||+ +...+++|+. ...++..+++..|+..++...+. . . +.
T Consensus 229 LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (1010)
T 2xgj_A 229 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 308 (1010)
T ss_dssp EECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------
T ss_pred EcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc
Confidence 99999 5667777764 23445556677777666543210 0 0 00
Q ss_pred -------------------HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHH------------------hhc
Q 004850 264 -------------------EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEI------------------TNM 306 (727)
Q Consensus 264 -------------------~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~------------------~~~ 306 (727)
...+..+.........+++|||++++..++.++..|.... ..+
T Consensus 309 ~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 309 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 1112223333333455689999999999999998885410 000
Q ss_pred CCCCC------------CeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCcc
Q 004850 307 GDQVG------------PVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAK 374 (727)
Q Consensus 307 ~~~~~------------~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k 374 (727)
..... ...+..+||+|++.+|..+++.|+.| ..+|||||+++++|||+|++++||+.
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G-------~ikVLVAT~~la~GIDiP~~~vVI~~---- 457 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-------FLKVLFATETFSIGLNMPAKTVVFTS---- 457 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT-------CCSEEEEEGGGGGSTTCCBSEEEESC----
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC-------CCcEEEEehHhhccCCCCCceEEEeC----
Confidence 00000 01278899999999999999999999 89999999999999999999999993
Q ss_pred ceeeccccCccccccccccHhhHHhhhcccCCCC---CceEEEecchh
Q 004850 375 QKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQ---PGKCFRLYTEK 419 (727)
Q Consensus 375 ~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~---~G~~~~L~t~~ 419 (727)
...||... ..|.|.++|.||+|||||.+ .|.||.|+++.
T Consensus 458 ~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 458 VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 12344332 23899999999999999995 59999999864
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=4.7e-31 Score=315.98 Aligned_cols=333 Identities=14% Similarity=0.142 Sum_probs=183.6
Q ss_pred hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
.++..++++|.++++.+..|+++++.+|||||||.++..+++....-.. ....+.++++|+.++..+.....+.+....
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 4577899999999999999999999999999999998877765431111 012335566666777777666666666655
Q ss_pred cccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcChhhHHHHHHHHHHHHHh---
Q 004850 141 DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN--- 213 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~--- 213 (727)
+..++...|........ ...+..|.++|+|++.+.+....+ +.++++||+||||. ..+......++..+...
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~-~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG-CSTTSHHHHHHHHHHHHHHT
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc-cCCCccHHHHHHHHHHHhhc
Confidence 66665555543221111 113567899999999998876543 78899999999995 44433444444444433
Q ss_pred --CCCCEEEEEcCcccH----------HHH---HhhhcCCCeeeeCCC---------ccceeee--ecc-----------
Q 004850 214 --RPDLKLVVMSATLEA----------EKF---QGYFYGAPLMKVPGR---------LHPVEIF--YTQ----------- 256 (727)
Q Consensus 214 --~~~~~vil~SATl~~----------~~~---~~~f~~~p~i~v~g~---------~~~v~~~--y~~----------- 256 (727)
.+..+++++|||... +.+ ...+. ...+..... ..|...+ +..
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~-~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcC-CcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 457899999999931 111 11111 111111100 0000000 000
Q ss_pred ---------------------C--------------------------C-------------------------------
Q 004850 257 ---------------------E--------------------------P------------------------------- 258 (727)
Q Consensus 257 ---------------------~--------------------------~------------------------------- 258 (727)
. +
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0 0
Q ss_pred -------------------------------------------------cccHHHHHHHHHHHHhhcCCCCCEEEecCCH
Q 004850 259 -------------------------------------------------ERDYLEAAIRTVVQIHMCEPSGDILVFLTGE 289 (727)
Q Consensus 259 -------------------------------------------------~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~ 289 (727)
...++..+...+.......+.+++|||++++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 0111112222222222235568999999999
Q ss_pred HHHHHHHHHHHHHHh--hcCC-CCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEecCccccCcccCCeE
Q 004850 290 EEIEDACRKITKEIT--NMGD-QVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGIV 365 (727)
Q Consensus 290 ~ei~~l~~~L~~~~~--~~~~-~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvlvaTniAe~gitIp~V~ 365 (727)
+.++.+++.|..... .+.. ...+.....+||+|++.+|.++++.|+. | ..+|||||+++++|||+|+|+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g-------~~~vLVaT~~~~~GIDlp~v~ 714 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-------DNRLLIATSVADEGIDIVQCN 714 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC-----------------------------------CCSEEEEECC-------CCCS
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccC-------CceEEEEcCchhcCCCchhCC
Confidence 999999999976310 0000 0113456678999999999999999998 7 789999999999999999999
Q ss_pred EEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhc
Q 004850 366 YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (727)
Q Consensus 366 ~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~ 422 (727)
+||++|. |-|..+|+||+|| ||.++|.||+|+++.+..
T Consensus 715 ~VI~yd~------------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 715 LVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp EEEEESC------------------CSCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred EEEEeCC------------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999 9999999999999 999999999999987653
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=1.2e-30 Score=301.97 Aligned_cols=314 Identities=16% Similarity=0.120 Sum_probs=221.7
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
..++ .++++|...++.+.+|+ +..++||+|||.++..+++... +.. ...+++.||++++.+.......+.+.+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~a-L~g---~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNA-LTG---KGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHH-TTS---SCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHH-HcC---CCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3577 88999999999999999 7799999999999998877322 221 246677888888888777788888888
Q ss_pred cccccceeceeeeeccccccCccccccChHHH-HHHHhc-------cccccCCeeEEeeccCcChh-hHH----------
Q 004850 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMT-------DPLLERYKVIVLDEAHERTL-ATD---------- 201 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~-------~~ll~~~~~lIlDEaher~~-~~d---------- 201 (727)
+.+++..+|..............|.|.|||++ .+.+.. ...+.++.++|+||||. ++ +..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~-mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS-ILIDEARTPLIISGQA 230 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH-HHTTTTTCEEEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh-hhhhccccchhhcCCc
Confidence 88887777653222222223578999999999 333322 12378899999999984 44 332
Q ss_pred ----HHHHHHHHHHHhCC----------CCEEE-----------------EEcCcccH--HHH-----Hhhh-cC-C-C-
Q 004850 202 ----VLFGLLKEVLKNRP----------DLKLV-----------------VMSATLEA--EKF-----QGYF-YG-A-P- 239 (727)
Q Consensus 202 ----~ll~ll~~l~~~~~----------~~~vi-----------------l~SATl~~--~~~-----~~~f-~~-~-p- 239 (727)
.+...+..+....+ +.+++ ++|||+.. ..+ +.++ .. . .
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 24455566655443 56777 89999742 111 2222 11 0 0
Q ss_pred -----eeee--------CCCcc------------------------cee-------------------------------
Q 004850 240 -----LMKV--------PGRLH------------------------PVE------------------------------- 251 (727)
Q Consensus 240 -----~i~v--------~g~~~------------------------~v~------------------------------- 251 (727)
++.+ +|+.+ .++
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 1001 11100 000
Q ss_pred -ee---------------eccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEE
Q 004850 252 -IF---------------YTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKV 315 (727)
Q Consensus 252 -~~---------------y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v 315 (727)
+. +......++..+++..+...+. ...++|||++|++.++.+++.|... ++.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~ 459 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNK---------GIPH 459 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTT---------TCCC
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCE
Confidence 00 1111233455555555544432 2457999999999999999999874 6889
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccC--------CeEEEEcCCCccceeeccccCcccc
Q 004850 316 VPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID--------GIVYVIDPGFAKQKVYNPRVRVESL 387 (727)
Q Consensus 316 ~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp--------~V~~VId~g~~k~~~~~~~~~~~~l 387 (727)
..|||++.+.++..+.+.++.| .|+||||+|+||+||+ |+.|||+|++
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g---------~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~--------------- 515 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG---------AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER--------------- 515 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT---------CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC---------------
T ss_pred EEeeCCccHHHHHHHHHcCCCC---------eEEEeCCccccCcCccccchhhhcCCcEEEEecC---------------
Confidence 9999999988888777777655 5999999999999999 8999999999
Q ss_pred ccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 388 LVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 388 ~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
|-|...|+||+|||||. .+|.++.|++.++
T Consensus 516 ---p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 516 ---HESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp ---CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ---CCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99999999999999999 9999999999765
No 41
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=6.6e-31 Score=292.69 Aligned_cols=285 Identities=18% Similarity=0.225 Sum_probs=194.2
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeee-cccc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRF-EDCS 158 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~-~~~~ 158 (727)
+|++++++||||||||+.+..++++.. ... ..+.++++||+. .+.++++.+. +. .+++.... ....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~-~~~--g~~~lvl~Pt~~---La~Q~~~~~~---~~----~v~~~~~~~~~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA-VKK--RLRTVILAPTRV---VASEMYEALR---GE----PIRYMTPAVQSER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH-HHT--TCCEEEEESSHH---HHHHHHHHTT---TS----CEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-HhC--CCCEEEECcHHH---HHHHHHHHhC---CC----eEEEEecCccccC
Confidence 478999999999999999866655322 111 123444454444 3434443332 22 23322211 1222
Q ss_pred ccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHhhh-cC
Q 004850 159 SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF-YG 237 (727)
Q Consensus 159 ~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~f-~~ 237 (727)
..+..+.++|.|.+.+.++....+.++++||+||+|......+.....++.+.. +++.++++||||+.... ..+. .+
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~~ 145 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVS-MGDAGAIFMTATPPGTT-EAFPPSN 145 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-TTSCEEEEEESSCTTCC-CSSCCCS
T ss_pred CCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhh-CCCCcEEEEeCCCCcch-hhhcCCC
Confidence 345667789999998888887779999999999999764444556666666653 35899999999996421 1111 12
Q ss_pred CCeeeeCCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 004850 238 APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (727)
Q Consensus 238 ~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~ 317 (727)
.|++.+.+. +........ +. ... +..|++|||+|++++++.+++.|... ++.+..
T Consensus 146 ~~i~~~~~~-------~~~~~~~~~----~~----~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~ 200 (431)
T 2v6i_A 146 SPIIDEETR-------IPDKAWNSG----YE----WIT-EFDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLY 200 (431)
T ss_dssp SCCEEEECC-------CCSSCCSSC----CH----HHH-SCSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEE
T ss_pred Cceeecccc-------CCHHHHHHH----HH----HHH-cCCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEE
Confidence 233322211 111111111 11 111 23679999999999999999999874 577999
Q ss_pred ecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhH
Q 004850 318 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASA 397 (727)
Q Consensus 318 lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~ 397 (727)
+||+ +|.++++.|++| ..+||||||++|+||||| +.+|||+|..+.++|| ..++......|.+.++|
T Consensus 201 lhg~----~r~~~~~~f~~g-------~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~ 267 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSE-------KWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASA 267 (431)
T ss_dssp ESTT----THHHHTTHHHHS-------CCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHH
T ss_pred eCCc----cHHHHHHhhcCC-------CCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHH
Confidence 9997 577899999998 899999999999999999 9999999999999998 66777777789999999
Q ss_pred HhhhcccCCCC-CceEEEecc
Q 004850 398 HQRSGRAGRTQ-PGKCFRLYT 417 (727)
Q Consensus 398 ~qR~GRaGR~~-~G~~~~L~t 417 (727)
.||+|||||.+ .+.|+.+|.
T Consensus 268 ~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhhccCCCCCCCCeEEEEc
Confidence 99999999994 333444444
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.5e-30 Score=287.19 Aligned_cols=317 Identities=16% Similarity=0.174 Sum_probs=211.8
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
.+++++|.++++.+..+ .+++.+|||+|||+++..++..... ....+ +++..|++..+.+..+.+.+..+.
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~---~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGK---VLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSC---EEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCe---EEEEECCHHHHHHHHHHHHHHhCcch
Confidence 47899999999999999 8889999999999998877665421 01112 333345555555566666665443
Q ss_pred -cccceeceeeeeccc-cccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEE
Q 004850 143 -TIGEEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKL 219 (727)
Q Consensus 143 -~~~~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~v 219 (727)
.+....|.....+.. ......+.++|++.+...+....+ +.++++||+||||. ..+......+.+.+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCCCCeE
Confidence 333333322111000 012467889999999988776554 78999999999995 33332333344444445567899
Q ss_pred EEEcCccc--HHHHHhh---hcCCCeeeeC-CC------ccceeeeec--cC----------------------------
Q 004850 220 VVMSATLE--AEKFQGY---FYGAPLMKVP-GR------LHPVEIFYT--QE---------------------------- 257 (727)
Q Consensus 220 il~SATl~--~~~~~~~---f~~~p~i~v~-g~------~~~v~~~y~--~~---------------------------- 257 (727)
+++|||.. .+.+.++ +...+..... .. ..+....+. ..
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999984 3333322 2211110000 00 000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 004850 258 -------------------------------------------------------------------------------- 257 (727)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (727)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred --------------------CcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEE
Q 004850 258 --------------------PERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVP 317 (727)
Q Consensus 258 --------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~ 317 (727)
....++..+...+.......+.+++|||+++.+.++.+++.|... ++.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~ 390 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKR 390 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEE
Confidence 011122222222222222256789999999999999999999874 578999
Q ss_pred ecC--------CCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccc
Q 004850 318 LYS--------TLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLV 389 (727)
Q Consensus 318 lh~--------~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~ 389 (727)
+|| +++..+|.++++.|++| ..+|||||+++++|||+|++++||++|.
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~-------~~~vLv~T~~~~~Gldl~~~~~Vi~~d~----------------- 446 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARG-------EFNVLVATSVGEEGLDVPEVDLVVFYEP----------------- 446 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHT-------SCSEEEECGGGGGGGGSTTCCEEEESSC-----------------
T ss_pred EeccccccccccCCHHHHHHHHHHHhcC-------CceEEEECCccccCCCchhCCEEEEeCC-----------------
Confidence 999 99999999999999988 7899999999999999999999999998
Q ss_pred ccccHhhHHhhhcccCCCCCceEEEecchhhhcc
Q 004850 390 SPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNN 423 (727)
Q Consensus 390 ~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~~ 423 (727)
|-+.++|.||+||+||.++|.||+|+++.+.+.
T Consensus 447 -~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 447 -VPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp -CHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHH
T ss_pred -CCCHHHHHHHHhhccCCCCceEEEEEecCCHHH
Confidence 889999999999999998899999999876543
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=4.8e-30 Score=311.02 Aligned_cols=334 Identities=13% Similarity=0.139 Sum_probs=183.4
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
-.+...++++|.++++.+..|+++++.++||||||.++..+++....-.. ....+.++++|+.++..+.....+.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 34577899999999999999999999999999999999988876642111 01233455666666666666666666655
Q ss_pred ccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc--ccCCeeEEeeccCcChhhHHHHHHHHHHHHHh--
Q 004850 140 MDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL--LERYKVIVLDEAHERTLATDVLFGLLKEVLKN-- 213 (727)
Q Consensus 140 ~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l--l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~-- 213 (727)
.+..+....|........ ......|.++|+|++.+.+....+ +.++++||+||||. .........++..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~-~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN-TTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG-CSTTCHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc-cCCCccHHHHHHHHHHHhh
Confidence 566655555543211111 112467889999999998876544 78899999999995 44333444445444443
Q ss_pred ---CCCCEEEEEcCcccH----------HHHH---hhhcCCCeeeeCCC---------ccceeee--ec-----------
Q 004850 214 ---RPDLKLVVMSATLEA----------EKFQ---GYFYGAPLMKVPGR---------LHPVEIF--YT----------- 255 (727)
Q Consensus 214 ---~~~~~vil~SATl~~----------~~~~---~~f~~~p~i~v~g~---------~~~v~~~--y~----------- 255 (727)
.+..+++++|||... +.+. ..+ +...+..... ..|...+ +.
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc-CCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 456899999999931 1111 111 1111111000 0000000 00
Q ss_pred ----------------------------cC-------------------C------------------------------
Q 004850 256 ----------------------------QE-------------------P------------------------------ 258 (727)
Q Consensus 256 ----------------------------~~-------------------~------------------------------ 258 (727)
.. +
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 0
Q ss_pred --------------------------------------------------cccHHHHHHHHHHHHhhcCCCCCEEEecCC
Q 004850 259 --------------------------------------------------ERDYLEAAIRTVVQIHMCEPSGDILVFLTG 288 (727)
Q Consensus 259 --------------------------------------------------~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~ 288 (727)
...++..+...+.......+.+++|||+++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 000111111111122222456899999999
Q ss_pred HHHHHHHHHHHHHHHh--hcCC-CCCCeEEEEecCCCCHHHHhhhcCCCCC-CCCCCCCCCcEEEEecCccccCcccCCe
Q 004850 289 EEEIEDACRKITKEIT--NMGD-QVGPVKVVPLYSTLPPAMQQKIFEPAPP-PSKEGGPPGRKIVVSTNIAETSLTIDGI 364 (727)
Q Consensus 289 ~~ei~~l~~~L~~~~~--~~~~-~~~~~~v~~lh~~l~~~~r~~~~~~~~~-g~~~~~~~~~kvlvaTniAe~gitIp~V 364 (727)
++.++.+++.|..... .+.. ...+.....+||+|++.+|.++++.|+. | ..+|||||+++++|||||+|
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g-------~~~VLVaT~~~~eGIDlp~v 713 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK-------DNRLLIATSVADEGIDIVQC 713 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------------CCSEEEEECC------CCCC
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC-------CeeEEEEeCchhcCCcchhC
Confidence 9999999999986410 0000 0113456677999999999999999998 7 78999999999999999999
Q ss_pred EEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhhc
Q 004850 365 VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN 422 (727)
Q Consensus 365 ~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~~ 422 (727)
++||++|. |-|..+|+||+|| ||.++|.||.|+++.+..
T Consensus 714 ~~VI~yD~------------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 714 NLVVLYEY------------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp SEEEEESC------------------CSCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred CEEEEeCC------------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 99999998 9999999999999 999999999999987653
No 44
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=306.22 Aligned_cols=324 Identities=17% Similarity=0.160 Sum_probs=194.4
Q ss_pred cCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC--ccccCceEEEEcccchhhh-ccHHHHHHHh
Q 004850 63 KSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVAA-MSVSRRVAEE 139 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~-~~v~~~v~~~ 139 (727)
..++++++|.++++.+.+|+++++.+|||||||.++..+++....-.. ....+.++++|+..+..+. ....+.+...
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 446889999999999999999999999999999998877765321000 0012345566655554444 3333333222
Q ss_pred ccccccceeceeeeecc--ccccCccccccChHHHHHHHhcc-------ccccCCeeEEeeccCcChhhHHHHHHHHHHH
Q 004850 140 MDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTD-------PLLERYKVIVLDEAHERTLATDVLFGLLKEV 210 (727)
Q Consensus 140 ~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~-------~ll~~~~~lIlDEaher~~~~d~ll~ll~~l 210 (727)
...+....|.....+. .......|.++|++++.+.+... ..+.++++||+||||. .........++..+
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHY 161 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHH
Confidence 1344444443322111 11135788999999999877432 2478999999999994 33322221222222
Q ss_pred HH-----hC---------CCCEEEEEcCcccH----------HH---HHhhhcCCCeeeeCCC--------ccceeeeec
Q 004850 211 LK-----NR---------PDLKLVVMSATLEA----------EK---FQGYFYGAPLMKVPGR--------LHPVEIFYT 255 (727)
Q Consensus 211 ~~-----~~---------~~~~vil~SATl~~----------~~---~~~~f~~~p~i~v~g~--------~~~v~~~y~ 255 (727)
.. .. +..+++++|||... +. +...+....+...... ..|...+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 11 11 57899999999953 11 1122221111111100 011111000
Q ss_pred -cC------------------------C----------------------------------------------------
Q 004850 256 -QE------------------------P---------------------------------------------------- 258 (727)
Q Consensus 256 -~~------------------------~---------------------------------------------------- 258 (727)
.. +
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0
Q ss_pred ---------------------------------------------------------cccHHHHHHHHHHHHhhcCC-CC
Q 004850 259 ---------------------------------------------------------ERDYLEAAIRTVVQIHMCEP-SG 280 (727)
Q Consensus 259 ---------------------------------------------------------~~~~~~~~~~~l~~i~~~~~-~g 280 (727)
...++..+...+.......+ .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 00000011112222222223 68
Q ss_pred CEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCC--------CCHHHHhhhcCCCCCCCCCCCCCCcEEEEec
Q 004850 281 DILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYST--------LPPAMQQKIFEPAPPPSKEGGPPGRKIVVST 352 (727)
Q Consensus 281 ~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT 352 (727)
++|||+++++.++.+++.|.... .+. ..++.+..+||+ |++.+|.++++.|+.| ..+|||||
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~-~l~--~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-------~~~VLVaT 471 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENE-KFA--EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-------KINLLIAT 471 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSC-SCC-------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----------CCSEEE
T ss_pred cEEEEECcHHHHHHHHHHHHhCc-ccc--ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-------CCcEEEEc
Confidence 99999999999999999997630 010 125889999999 9999999999999999 88999999
Q ss_pred CccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecch
Q 004850 353 NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE 418 (727)
Q Consensus 353 niAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~ 418 (727)
+++++|||+|+|++||++|+ |-|.++|+||+|||||. |.++.+++.
T Consensus 472 ~~~~~GIDip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~--g~~~~l~~~ 517 (699)
T 4gl2_A 472 TVAEEGLDIKECNIVIRYGL------------------VTNEIAMVQARGRARAD--ESTYVLVAH 517 (699)
T ss_dssp CSCCTTSCCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSS--SCEEEEEEE
T ss_pred cccccCCccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCC--CceEEEEEe
Confidence 99999999999999999999 99999999999998765 455656554
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=6.9e-30 Score=312.24 Aligned_cols=343 Identities=14% Similarity=0.109 Sum_probs=215.7
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH--hccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE--EMDV 142 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~--~~~~ 142 (727)
..++++|.++++.+..|++++++||||||||+.+..+++... . ...+.++++|++++. .++++++.. ..+.
T Consensus 77 f~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~--~~~~~Lil~PtreLa---~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--R--KGKKSALVFPTVTLV---KQTLERLQKLADEKV 149 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--T--TTCCEEEEESSHHHH---HHHHHHHHTTSCTTS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--h--cCCeEEEEechHHHH---HHHHHHHHHhhCCCC
Confidence 368999999999999999999999999999997665554432 1 112345555555554 444555544 2233
Q ss_pred cccceeceeee---ec---cccccCccccccChHHHHHHHhccccccCCeeEEeeccCc---------Chhh-HHHHHHH
Q 004850 143 TIGEEVGYSIR---FE---DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHE---------RTLA-TDVLFGL 206 (727)
Q Consensus 143 ~~~~~vg~~~~---~~---~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEahe---------r~~~-~d~ll~l 206 (727)
.++...|.... .. ........|.++|+|++.+++.. ..+.++++||+||||. ++++ .++....
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 44444443211 00 01112368899999999876653 3478999999999984 2222 2221121
Q ss_pred HHHHHHh-C-----------CCCEEEEEcCcc-cH---HHHHhhhcCCCeeeeCCCccceeeeeccCCcccHHHHHHHHH
Q 004850 207 LKEVLKN-R-----------PDLKLVVMSATL-EA---EKFQGYFYGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTV 270 (727)
Q Consensus 207 l~~l~~~-~-----------~~~~vil~SATl-~~---~~~~~~f~~~p~i~v~g~~~~v~~~y~~~~~~~~~~~~~~~l 270 (727)
+..+... . ++.++++||||+ +. ..+...+....+.........+.+.|...... ..+...+
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~---~~L~~ll 305 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSK---EKLVELL 305 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCH---HHHHHHH
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHH---HHHHHHH
Confidence 3333321 1 478999999995 32 12222222222211122233466667665332 2233322
Q ss_pred HHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE-EecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEE
Q 004850 271 VQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV-PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIV 349 (727)
Q Consensus 271 ~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvl 349 (727)
.. .++++|||+++++.++.++..|... ++.+. .+||. |.+ ++.|++| ..+||
T Consensus 306 ~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F~~G-------~~~VL 358 (1104)
T 4ddu_A 306 EI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVG-------KINIL 358 (1104)
T ss_dssp HH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHHHHT-------SCSEE
T ss_pred Hh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHHHCC-------CCCEE
Confidence 22 2378999999999999999999874 57787 99992 455 8999999 89999
Q ss_pred Ee----cCccccCcccCC-eEEEEcCCCccce-----eeccccCcccc--------------------------------
Q 004850 350 VS----TNIAETSLTIDG-IVYVIDPGFAKQK-----VYNPRVRVESL-------------------------------- 387 (727)
Q Consensus 350 va----TniAe~gitIp~-V~~VId~g~~k~~-----~~~~~~~~~~l-------------------------------- 387 (727)
|| ||+++||||||+ |++|||+|+++.+ .++|...+..|
T Consensus 359 Vatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~ 438 (1104)
T 4ddu_A 359 IGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFV 438 (1104)
T ss_dssp EEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred EEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99 999999999999 9999999998822 23333322222
Q ss_pred -----------------ccccccHhhHHhhhcccCCCC-----CceEEEecchhhhccc----C---CCCCCCcccccCc
Q 004850 388 -----------------LVSPISKASAHQRSGRAGRTQ-----PGKCFRLYTEKSFNND----L---QPQTYPEILRSNL 438 (727)
Q Consensus 388 -----------------~~~pis~~~~~qR~GRaGR~~-----~G~~~~L~t~~~~~~~----l---~~~~~pei~r~~l 438 (727)
.....+..+|+||+|||||.. .|.++.+..+...-.. + .+....++...++
T Consensus 439 ~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 439 EKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCH
Confidence 001126779999999999962 5788888865432111 1 2333334445666
Q ss_pred hhhHHHH
Q 004850 439 ANTVLTL 445 (727)
Q Consensus 439 ~~~~L~l 445 (727)
+.+.-.+
T Consensus 519 ~~~~~~i 525 (1104)
T 4ddu_A 519 KELVHEV 525 (1104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=1.5e-29 Score=309.31 Aligned_cols=273 Identities=15% Similarity=0.085 Sum_probs=178.0
Q ss_pred HhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 61 KRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 61 ~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
..++. + ++|.++++.+.+|++++++||||||||+ +..+++... .. ...+.++++||+++..|....++.+....
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~-~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFL-AL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHH-HT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHH-hh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 35777 6 9999999999999999999999999997 665555433 11 11346677888888888777777777666
Q ss_pred cc----cccceeceeeeecc----ccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhH-HHHHHHHHHHH
Q 004850 141 DV----TIGEEVGYSIRFED----CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT-DVLFGLLKEVL 211 (727)
Q Consensus 141 ~~----~~~~~vg~~~~~~~----~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~-d~ll~ll~~l~ 211 (727)
+. .++..+|.....+. ....+..|.++|+|++.+.+.. +.++++||+||||. +++. ..+..++..+-
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~-~l~~~~~~~~i~~~lg 202 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA-ILKASKNVDKLLHLLG 202 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH-HHTSTHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhh-hhhccccHHHHHHHhC
Confidence 65 55555554322110 0011278899999999986554 77999999999995 4431 22222222221
Q ss_pred H--------hCCCCEEEEEcCcccHH-HHH-hhhcCCCeeeeCCC---ccceeeeeccCCcccHHHHHHHHHHHHhhcCC
Q 004850 212 K--------NRPDLKLVVMSATLEAE-KFQ-GYFYGAPLMKVPGR---LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEP 278 (727)
Q Consensus 212 ~--------~~~~~~vil~SATl~~~-~~~-~~f~~~p~i~v~g~---~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~ 278 (727)
- ..+..+++++|||+... .+. .++.+...+.+... ...+.+.|......+.+ ..+.. ..
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L-------~~ll~-~~ 274 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTL-------SSILE-KL 274 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTT-------HHHHT-TS
T ss_pred cchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHH-------HHHHh-hc
Confidence 0 01256789999998542 111 12211112222222 23466666643322222 22222 22
Q ss_pred CCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEe----cCc
Q 004850 279 SGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVS----TNI 354 (727)
Q Consensus 279 ~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlva----Tni 354 (727)
++++||||+++++++.+++.|... +.+..+||++. ++++.|+.| ..+|||| ||+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G-------~~~VLVaTas~Tdv 332 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEG-------EIDHLIGTAHYYGT 332 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHT-------SCSEEEEECC----
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcC-------CCcEEEEecCCCCe
Confidence 578999999999999999888641 67999999984 566778888 7899999 999
Q ss_pred cccCcccCCe-EEEEcCCCc
Q 004850 355 AETSLTIDGI-VYVIDPGFA 373 (727)
Q Consensus 355 Ae~gitIp~V-~~VId~g~~ 373 (727)
+++|||||+| ++||++|++
T Consensus 333 ~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 333 LVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp --CCSCCTTTCCEEEEESCC
T ss_pred eEeccccCCcccEEEEeCCC
Confidence 9999999995 999999997
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=4.7e-28 Score=279.64 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=202.5
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccc
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTI 144 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~ 144 (727)
..++++|...++.+.+|+ +..++||||||.++..+++... +.. .+.++++||++++.+.......+.+.++.++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~-l~g---~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v 146 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNA-LTG---KGVHVVTVNDYLAQRDAENNRPLFEFLGLTV 146 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHH-TTS---SCCEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHH-HcC---CcEEEEcCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 578999999999999998 7799999999999988876432 211 3477888999988888888888888888888
Q ss_pred cceeceeeeeccccccCccccccChHHH-HHHHhcc-------ccccCCeeEEeeccCcChh-hHH--------------
Q 004850 145 GEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLERYKVIVLDEAHERTL-ATD-------------- 201 (727)
Q Consensus 145 ~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~-------~ll~~~~~lIlDEaher~~-~~d-------------- 201 (727)
+..+|..............|.+.|||++ .+.+... ..+.++.++|+||||. ++ +..
T Consensus 147 ~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~-mLiD~a~tpLIiSg~~~~~~ 225 (853)
T 2fsf_A 147 GINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS-ILIDEARTPLIISGPAEDSS 225 (853)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH-HTTTTTTCEEEEEEC-----
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH-HHHhcCcccccccCCCccch
Confidence 7777753221111223568999999999 4444322 2368999999999994 44 321
Q ss_pred -H---HHHHHHHHHHh-----------------CCCCEEE------------------------EEcCcccH--HHH---
Q 004850 202 -V---LFGLLKEVLKN-----------------RPDLKLV------------------------VMSATLEA--EKF--- 231 (727)
Q Consensus 202 -~---ll~ll~~l~~~-----------------~~~~~vi------------------------l~SATl~~--~~~--- 231 (727)
+ +..+++.+... .+..+++ ++|||+.. ..+
T Consensus 226 ~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~a 305 (853)
T 2fsf_A 226 EMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAA 305 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHH
Confidence 1 22222222210 0133443 88998631 110
Q ss_pred --Hh--------hhc-CCCeeee--------CCC---------------------c---cceee-ee-------------
Q 004850 232 --QG--------YFY-GAPLMKV--------PGR---------------------L---HPVEI-FY------------- 254 (727)
Q Consensus 232 --~~--------~f~-~~p~i~v--------~g~---------------------~---~~v~~-~y------------- 254 (727)
+. |.. +..++.| +|+ . -.++. .|
T Consensus 306 l~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGT 385 (853)
T 2fsf_A 306 LRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGT 385 (853)
T ss_dssp ---------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECT
T ss_pred HHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCC
Confidence 11 110 0000000 000 0 00110 00
Q ss_pred ---------------------------------ccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHH
Q 004850 255 ---------------------------------TQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITK 301 (727)
Q Consensus 255 ---------------------------------~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~ 301 (727)
......++..+++..+...+ ....++|||+++.+.++.+++.|..
T Consensus 386 a~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~ 463 (853)
T 2fsf_A 386 ADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTK 463 (853)
T ss_dssp TCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHH
Confidence 11123345555555444433 2355799999999999999999987
Q ss_pred HHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCC------------------
Q 004850 302 EITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG------------------ 363 (727)
Q Consensus 302 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~------------------ 363 (727)
. ++.+..|||+..+.++..+.+.++.| .|+||||+|+||+||+.
T Consensus 464 ~---------gi~~~vLnak~~~rEa~iia~agr~G---------~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~ 525 (853)
T 2fsf_A 464 A---------GIKHNVLNAKFHANEAAIVAQAGYPA---------AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQ 525 (853)
T ss_dssp T---------TCCCEECCTTCHHHHHHHHHTTTSTT---------CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSH
T ss_pred C---------CCCEEEecCChhHHHHHHHHhcCCCC---------eEEEecccccCCcCccCCCchHhhhhhcccchhHH
Confidence 4 68889999999988888888888876 59999999999999997
Q ss_pred --------------e-----EEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 364 --------------I-----VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 364 --------------V-----~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
| .|||+|++ |-|...|.||+|||||. .||.+..+.+.++
T Consensus 526 ~~~~~~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 526 IEKIKADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 79999999 99999999999999999 9999999998765
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.9e-29 Score=297.09 Aligned_cols=314 Identities=16% Similarity=0.190 Sum_probs=205.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHhhhcC------CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccch
Q 004850 53 QRYYEILEKRKSLPVWQQKEEFLQVLKAN------QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRR 126 (727)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~q~~ii~~i~~g------~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~ 126 (727)
+.+.+.++..++ .++++|.++++.+.++ .+++++|+||||||..+..+++.... ...+.++++||+.+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~----~g~qvlvlaPtr~La 430 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE----AGFQTAFMVPTSILA 430 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH----HTSCEEEECSCHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH----cCCeEEEEeCcHHHH
Confidence 455666677777 8999999999998876 58889999999999999887775431 112344455544444
Q ss_pred hhhccHHHHHHHhccccccceeceeeeec------cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhH
Q 004850 127 VAAMSVSRRVAEEMDVTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLAT 200 (727)
Q Consensus 127 ~~~~~v~~~v~~~~~~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~ 200 (727)
.|.......+....+..++...|.....+ ........|.++|++.++. ...+.++++||+||+|.-....
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHH
Confidence 44433333333333455544444321111 1112246788999997754 3458899999999999521111
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccHHHHH-hhhcCCCeeee---CCCccceeeeeccCCcccHHHHHHHHHHHHhhc
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ-GYFYGAPLMKV---PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~-~~f~~~p~i~v---~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~ 276 (727)
-..+.....+.++++||||.....++ .++++..+..+ +....|+..++..... ...++..+.+..
T Consensus 507 ------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~~l-- 575 (780)
T 1gm5_A 507 ------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQEV-- 575 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSST---HHHHHHHHHHHT--
T ss_pred ------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccch---HHHHHHHHHHHH--
Confidence 01111222367899999998665554 33343333222 2223466666554332 223333333322
Q ss_pred CCCCCEEEecCCHHHH--------HHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEE
Q 004850 277 EPSGDILVFLTGEEEI--------EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKI 348 (727)
Q Consensus 277 ~~~g~iLVFl~~~~ei--------~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kv 348 (727)
...++++||||..++. +.+++.|... ..+++.+..+||+|++++|.++++.|++| ..+|
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G-------~~~I 642 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEG-------RYDI 642 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTT-------SSSB
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCC-------CCeE
Confidence 3467899999976553 4444444330 12357899999999999999999999999 8899
Q ss_pred EEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccc-ccHhhHHhhhcccCCC-CCceEEEecc
Q 004850 349 VVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP-ISKASAHQRSGRAGRT-QPGKCFRLYT 417 (727)
Q Consensus 349 lvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~p-is~~~~~qR~GRaGR~-~~G~~~~L~t 417 (727)
||||+++|+|||||++++||+++. | .+.+++.||+|||||. ++|.||.+++
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~------------------~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENP------------------ERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSC------------------SSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEECCCCCccccCCCCCEEEEeCC------------------CCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999999999999999999887 4 3678899999999998 8999999997
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=3.1e-27 Score=273.08 Aligned_cols=314 Identities=15% Similarity=0.092 Sum_probs=218.8
Q ss_pred hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.+. .++++|...++.+.+|+ +..++||+|||..+..+++... +.. ....++.||+.++.+.......+.+.++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~a-L~g---~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNA-LAG---NGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHH-TTT---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHH-HhC---CCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 355 88999999999999998 7799999999999888775322 211 2356777888888877777788888888
Q ss_pred ccccceeceeeeeccccccCccccccChHHH-HHHHhcc-------ccccCCeeEEeeccCcChh-hH------------
Q 004850 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLERYKVIVLDEAHERTL-AT------------ 200 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~-------~ll~~~~~lIlDEaher~~-~~------------ 200 (727)
.+++..+|..............|.|.|+|++ .+.+... ..+.++.++|+||||. ++ +.
T Consensus 181 Lsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs-mLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 181 LQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS-ILIDEARTPLIISGPAD 259 (922)
T ss_dssp CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH-HHTTGGGSCEEEEEECC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH-HHHhcCccceeecCCCC
Confidence 8887777643221111223568999999999 4444322 2367899999999983 44 32
Q ss_pred --HHHHHHHHHHHHhC----------CCCEEE-----------------EEcCcccH--HHH-----Hhhh-c-------
Q 004850 201 --DVLFGLLKEVLKNR----------PDLKLV-----------------VMSATLEA--EKF-----QGYF-Y------- 236 (727)
Q Consensus 201 --d~ll~ll~~l~~~~----------~~~~vi-----------------l~SATl~~--~~~-----~~~f-~------- 236 (727)
..+...+..+.... ++.+++ ++|||+.. ..+ +.++ .
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 12344444544433 367888 89999741 111 2221 1
Q ss_pred -CCCeeeeC--------CCcc------------------------cee-eee----------------------------
Q 004850 237 -GAPLMKVP--------GRLH------------------------PVE-IFY---------------------------- 254 (727)
Q Consensus 237 -~~p~i~v~--------g~~~------------------------~v~-~~y---------------------------- 254 (727)
+..++.|. |+.+ .++ +.|
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 11121111 1100 011 001
Q ss_pred ------------------ccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEE
Q 004850 255 ------------------TQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVV 316 (727)
Q Consensus 255 ------------------~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~ 316 (727)
......++..+++..+...+. ...++|||+++.+.++.+++.|... ++.+.
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~ 488 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIPHN 488 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCCCE
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEE
Confidence 011223445555555544443 3457999999999999999999874 68889
Q ss_pred EecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCe--------------------------------
Q 004850 317 PLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGI-------------------------------- 364 (727)
Q Consensus 317 ~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V-------------------------------- 364 (727)
.|||+..+.++..+.+.++.| .|+||||+|+||+||+.+
T Consensus 489 vLnak~~~rEa~iia~agr~G---------~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (922)
T 1nkt_A 489 VLNAKYHEQEATIIAVAGRRG---------GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSE 559 (922)
T ss_dssp EECSSCHHHHHHHHHTTTSTT---------CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHhcCCCC---------eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHH
Confidence 999999888888888888766 599999999999999975
Q ss_pred --------------------EEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 365 --------------------VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 365 --------------------~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
.|||+|++ |-|...|.||+|||||. .||.+..+.+.++.
T Consensus 560 ~~~~~~~~~~~~~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 560 LPIVKEEASKEAKEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHTTHHHHHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHhhhHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 69999999 99999999999999999 89999999986543
No 50
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=3.2e-27 Score=290.49 Aligned_cols=303 Identities=15% Similarity=0.196 Sum_probs=203.5
Q ss_pred cCCCchHHHHHHHHhhhc----CC--EEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHH
Q 004850 63 KSLPVWQQKEEFLQVLKA----NQ--VIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV 136 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~----g~--~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v 136 (727)
++. ++++|.++++.+.. |+ +++++|+||||||.++..+.+... . . +..+++..|++..+.+.++.+
T Consensus 601 ~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~-~-~-----g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 601 PFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-D-N-----HKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp CSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH-T-T-----TCEEEEECSSHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH-H-h-----CCeEEEEechHHHHHHHHHHH
Confidence 444 49999999999876 66 899999999999988765554322 1 1 112334446665566666666
Q ss_pred HHhcc---ccccceeceeeeec------cccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHH
Q 004850 137 AEEMD---VTIGEEVGYSIRFE------DCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLL 207 (727)
Q Consensus 137 ~~~~~---~~~~~~vg~~~~~~------~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll 207 (727)
.+... ..++...|+....+ ........|.++|++.+. ....+.++++||+||+|. .... ....+
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~--~g~~-~~~~l 745 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHR--FGVR-HKERI 745 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGG--SCHH-HHHHH
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHh--cChH-HHHHH
Confidence 54432 22222222111000 011224678889997553 233488999999999996 2222 23334
Q ss_pred HHHHHhCCCCEEEEEcCcccHHHHHhhhcCCC---eeee-CCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEE
Q 004850 208 KEVLKNRPDLKLVVMSATLEAEKFQGYFYGAP---LMKV-PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDIL 283 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~~~~~~~f~~~p---~i~v-~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iL 283 (727)
+.+ +++.++++||||.....+...+.+.. ++.. +....++..++....... ....+.... ...++++
T Consensus 746 ~~l---~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~----i~~~il~~l--~~g~qvl 816 (1151)
T 2eyq_A 746 KAM---RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV----VREAILREI--LRGGQVY 816 (1151)
T ss_dssp HHH---HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHH----HHHHHHHHH--TTTCEEE
T ss_pred HHh---cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHH----HHHHHHHHH--hcCCeEE
Confidence 443 34689999999986544443333222 1211 122345555554433221 222222222 2468899
Q ss_pred EecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCC
Q 004850 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDG 363 (727)
Q Consensus 284 VFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~ 363 (727)
||+++.++++.+++.|.... +++.+..+||+|++.+|.++++.|.+| ..+|||||+++|+|||||+
T Consensus 817 vf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g-------~~~VLVaT~v~e~GiDip~ 882 (1151)
T 2eyq_A 817 YLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQ-------RFNVLVCTTIIETGIDIPT 882 (1151)
T ss_dssp EECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTT-------SCCEEEESSTTGGGSCCTT
T ss_pred EEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcC-------CCcEEEECCcceeeecccC
Confidence 99999999999999998763 467899999999999999999999998 8899999999999999999
Q ss_pred eEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhh
Q 004850 364 IVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKS 420 (727)
Q Consensus 364 V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~ 420 (727)
+++||..+.. +.+.++|.||+||+||. ++|.||.++++..
T Consensus 883 v~~VIi~~~~-----------------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 883 ANTIIIERAD-----------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEEEEETTTT-----------------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CcEEEEeCCC-----------------CCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999965431 23567899999999998 7899999987643
No 51
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=9.9e-28 Score=241.28 Aligned_cols=185 Identities=20% Similarity=0.312 Sum_probs=156.8
Q ss_pred eeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhh
Q 004850 251 EIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKI 330 (727)
Q Consensus 251 ~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~ 330 (727)
...+...+..++++.+.. ++.....+++|||++++++++.+++.|... ++.+.++||+|++.+|.++
T Consensus 7 ~~~~~~~~~~~k~~~l~~----ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSD----LLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERV 73 (212)
T ss_dssp CCEEEECCTTSHHHHHHH----HHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHH
T ss_pred eeeEEeCCHHHHHHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHH
Confidence 444555565666655443 333345789999999999999999999875 6789999999999999999
Q ss_pred cCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CC
Q 004850 331 FEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QP 409 (727)
Q Consensus 331 ~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~ 409 (727)
++.|++| ..+||||||++++|||||+|++|||+|+ |.|.++|.||+|||||. ++
T Consensus 74 ~~~f~~g-------~~~vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~ 128 (212)
T 3eaq_A 74 LGAFRQG-------EVRVLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRG 128 (212)
T ss_dssp HHHHHSS-------SCCEEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--
T ss_pred HHHHHCC-------CCeEEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCC
Confidence 9999999 8999999999999999999999999999 99999999999999999 69
Q ss_pred ceEEEecchhh--------------hcccCCCCCCCcccccCchhhHHHHHHcCCCCcccc-----cCCCCCcHHHHHHH
Q 004850 410 GKCFRLYTEKS--------------FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF-----DFMDPPAPETLMRA 470 (727)
Q Consensus 410 G~~~~L~t~~~--------------~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~-----~~~~~P~~~~i~~a 470 (727)
|.||.||++.+ +.. +.....|||.+..+..+++.++.++..+...| +|+++|+++.+.+|
T Consensus 129 g~~~~l~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a 207 (212)
T 3eaq_A 129 GRVVLLYGPRERRDVEALERAVGRRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAAL 207 (212)
T ss_dssp BEEEEEECGGGHHHHHHHHHHHSSCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHH
T ss_pred CeEEEEEchhHHHHHHHHHHHhcCcCee-cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999877 444 67777889999999999999999887655555 67889999999999
Q ss_pred HHHH
Q 004850 471 LEVL 474 (727)
Q Consensus 471 ~~~L 474 (727)
+..|
T Consensus 208 l~~l 211 (212)
T 3eaq_A 208 LALL 211 (212)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8765
No 52
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-27 Score=252.19 Aligned_cols=191 Identities=19% Similarity=0.278 Sum_probs=162.3
Q ss_pred eeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhh
Q 004850 250 VEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQK 329 (727)
Q Consensus 250 v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 329 (727)
++++|...+..++++.+...+ ....++++|||++++++++.+++.|... ++.+.++||+|++.+|.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll----~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLL----YVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHH----HHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHH----HhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHH
Confidence 567788777777776554433 2234789999999999999999999764 688999999999999999
Q ss_pred hcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-C
Q 004850 330 IFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q 408 (727)
Q Consensus 330 ~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~ 408 (727)
+++.|+.| ..+||||||+|++|||||+|++|||+|+ |.+.++|+||+|||||. +
T Consensus 70 ~~~~f~~g-------~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 70 VMGAFRQG-------EVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp HHHHHHHT-------SCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC----
T ss_pred HHHHhhcC-------CceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCC
Confidence 99999999 8999999999999999999999999999 99999999999999999 7
Q ss_pred CceEEEecchhh--------------hcccCCCCCCCcccccCchhhHHHHHHcCCCCcccc-----cCCCCCcHHHHHH
Q 004850 409 PGKCFRLYTEKS--------------FNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF-----DFMDPPAPETLMR 469 (727)
Q Consensus 409 ~G~~~~L~t~~~--------------~~~~l~~~~~pei~r~~l~~~~L~lk~~~~~~~~~~-----~~~~~P~~~~i~~ 469 (727)
+|.||+||+..+ +.. +.....|||.+.++..+++.++.++..+...| +|+++|+++.+.+
T Consensus 125 ~G~~i~l~~~~e~~~~~~ie~~~~~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laa 203 (300)
T 3i32_A 125 GGRVVLLYGPRERRDVEALERAVGRRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAA 203 (300)
T ss_dssp -CEEEEEECSSTHHHHHHHHHHHTCCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHH
T ss_pred CceEEEEeChHHHHHHHHHHHHhCCcceE-eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999877 444 77778899999999999999998876665555 6788899999999
Q ss_pred HHHHHHHcCC
Q 004850 470 ALEVLNYLGA 479 (727)
Q Consensus 470 a~~~L~~lga 479 (727)
|+..|.....
T Consensus 204 al~~l~~~~~ 213 (300)
T 3i32_A 204 LLALLLGGAP 213 (300)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhcCCc
Confidence 9999976654
No 53
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=2.4e-26 Score=261.63 Aligned_cols=302 Identities=12% Similarity=0.113 Sum_probs=189.9
Q ss_pred CCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc---
Q 004850 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM--- 140 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--- 140 (727)
...++++|.++++.+..+.++++.|+||||||.++..++.....-.. .+.++++|+. ..+.+..+.+.+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~---~~vlvl~P~~---~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE---GKILIIVPTT---ALTTQMADDFVDYRLFS 184 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS---SEEEEEESSH---HHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC---CeEEEEECcH---HHHHHHHHHHHHhhcCC
Confidence 34789999999999999999999999999999998766654321001 1234444444 34444445553321
Q ss_pred cccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHh-CCCCEE
Q 004850 141 DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-RPDLKL 219 (727)
Q Consensus 141 ~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~-~~~~~v 219 (727)
+..+....|.....+. ......|.++|++.+.+. ....+.++++||+||+|. ... ..+ ..+++. .+..++
T Consensus 185 ~~~v~~~~~~~~~~~~-~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~-~~~-~~~----~~il~~~~~~~~~ 255 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK-YKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-KSI----SSIISGLNNCMFK 255 (510)
T ss_dssp GGGEEECGGGCCTTGG-GCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-HHH----HHHGGGCTTCCEE
T ss_pred ccceEEEecCCccccc-cccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC-CCc-ccH----HHHHHhcccCcEE
Confidence 1222222222111111 114567889999965432 123578899999999995 333 222 233333 246799
Q ss_pred EEEcCcccHH-----HHHhhhcCCCeeeeCC-------Cccceeee--eccCCc--------ccH-------------HH
Q 004850 220 VVMSATLEAE-----KFQGYFYGAPLMKVPG-------RLHPVEIF--YTQEPE--------RDY-------------LE 264 (727)
Q Consensus 220 il~SATl~~~-----~~~~~f~~~p~i~v~g-------~~~~v~~~--y~~~~~--------~~~-------------~~ 264 (727)
+++|||.... .+..+++ ..++.++. ...+.... ....+. ..+ ..
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 9999999421 2223333 22222221 11111111 111110 111 11
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCC
Q 004850 265 AAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPP 344 (727)
Q Consensus 265 ~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~ 344 (727)
.+...+.... ......++||++ .++++.+++.|... +..+..+||++++.+|.++++.|.+|
T Consensus 335 ~l~~~l~~~~-~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g------- 396 (510)
T 2oca_A 335 WIAKLAIKLA-QKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENG------- 396 (510)
T ss_dssp HHHHHHHHHH-TTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHH-hcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCC-------
Confidence 1222222222 223445666666 88888888888763 23789999999999999999999988
Q ss_pred CcEEEEec-CccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCCc-eEEEecc
Q 004850 345 GRKIVVST-NIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG-KCFRLYT 417 (727)
Q Consensus 345 ~~kvlvaT-niAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G-~~~~L~t 417 (727)
..+||||| +++++|||+|++++||.++. |.|.++|.||+||+||.++| .++.+|+
T Consensus 397 ~~~vLv~T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 397 KGIIIVASYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSCEEEEEHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCEEEEEcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 78899999 99999999999999999988 88999999999999999554 4777766
No 54
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=4.8e-26 Score=256.54 Aligned_cols=293 Identities=17% Similarity=0.166 Sum_probs=192.5
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc-
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (727)
..++++|.++++.+.++..+++.++||||||.++..++.... .+.++++| .+..+.+..+++.+ ++..
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~-------~~~Lvl~P---~~~L~~Q~~~~~~~-~~~~~ 160 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-------TPTLIVVP---TLALAEQWKERLGI-FGEEY 160 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHC-------SCEEEEES---SHHHHHHHHHHGGG-GCGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcC-------CCEEEEEC---CHHHHHHHHHHHHh-CCCcc
Confidence 578999999999999999999999999999999887765421 22444444 43344444555544 3433
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
++...|. ......|.++|++.+..... .+..++++||+||+|. ..+..+ +.+....+..+++++|
T Consensus 161 v~~~~g~-------~~~~~~Ivv~T~~~l~~~~~--~~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lS 225 (472)
T 2fwr_A 161 VGEFSGR-------IKELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLT 225 (472)
T ss_dssp EEEBSSS-------CBCCCSEEEEEHHHHHHTHH--HHTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEE
T ss_pred eEEECCC-------cCCcCCEEEEEcHHHHHHHH--HhcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEe
Confidence 3322221 22346788999998876542 2235699999999995 333322 2234444578999999
Q ss_pred CcccH-----HHHHhhhcCCCeee-----eCCC-ccceee--eecc----------------------------------
Q 004850 224 ATLEA-----EKFQGYFYGAPLMK-----VPGR-LHPVEI--FYTQ---------------------------------- 256 (727)
Q Consensus 224 ATl~~-----~~~~~~f~~~p~i~-----v~g~-~~~v~~--~y~~---------------------------------- 256 (727)
||... ..+..+++. .+.. +.+. ..+... ....
T Consensus 226 ATp~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGG-KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN 304 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCC-EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSST
T ss_pred cCccCCCCHHHHHHHHhCC-eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHH
Confidence 99851 112222211 0000 0000 000000 0000
Q ss_pred --------CC-cccH-------------HHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeE
Q 004850 257 --------EP-ERDY-------------LEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVK 314 (727)
Q Consensus 257 --------~~-~~~~-------------~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~ 314 (727)
.+ .... .......+..+......+++|||+++.+.++.+++.|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------------- 370 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------------- 370 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------
Confidence 00 0000 00112233333333557899999999999988887662
Q ss_pred EEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccH
Q 004850 315 VVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK 394 (727)
Q Consensus 315 v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~ 394 (727)
+..+||+++..+|.++++.|++| ..+|||||+++++|+|+|++++||+++. |-|.
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g-------~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~ 425 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTG-------RFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSA 425 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHS-------SCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCC
T ss_pred cceeeCCCCHHHHHHHHHHHhCC-------CCCEEEEcCchhcCcccccCcEEEEECC------------------CCCH
Confidence 34589999999999999999988 8899999999999999999999999888 8899
Q ss_pred hhHHhhhcccCCCCCc----eEEEecchhhhcc
Q 004850 395 ASAHQRSGRAGRTQPG----KCFRLYTEKSFNN 423 (727)
Q Consensus 395 ~~~~qR~GRaGR~~~G----~~~~L~t~~~~~~ 423 (727)
..|.||+||+||.++| .+|.|+++...+.
T Consensus 426 ~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 426 REYIQRLGRILRPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp HHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--
T ss_pred HHHHHHHhhccCCCCCCceEEEEEEEeCCCchH
Confidence 9999999999999766 6788888765443
No 55
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.6e-25 Score=226.14 Aligned_cols=188 Identities=37% Similarity=0.630 Sum_probs=161.4
Q ss_pred ChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhcc
Q 004850 52 SQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMS 131 (727)
Q Consensus 52 ~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~ 131 (727)
++.+.++.+.+..+|++++|.++++.+.+|++++++|+|||||||++..++++....... .....++++.|++..+.+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~la~q 124 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--AAECNIVVTQPRRISAVS 124 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--GGGCEEEEEESSHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--CCceEEEEeccchHHHHH
Confidence 445556677788999999999999999999999999999999999999888765421111 123467888999999999
Q ss_pred HHHHHHHhccccccceeceeeeeccccc-cCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHH
Q 004850 132 VSRRVAEEMDVTIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEV 210 (727)
Q Consensus 132 v~~~v~~~~~~~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l 210 (727)
++++++..++..++..+|+..+++.... .+..|.++|+|++++.+.. .+.++++||+||||++.++.++.+..++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 125 VAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp HHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 9999999998888999999887776654 5678999999999999866 489999999999998889999999999999
Q ss_pred HHhCCCCEEEEEcCcccHHHHHhhhcCCCeeee
Q 004850 211 LKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKV 243 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~~~~~~~f~~~p~i~v 243 (727)
....++.++++||||++.+.+++||.++|++.+
T Consensus 203 ~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred HhhCCCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 988889999999999998889999999998864
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.89 E-value=2.9e-23 Score=240.47 Aligned_cols=306 Identities=14% Similarity=0.106 Sum_probs=173.0
Q ss_pred CchHHHHHHHHhhhc-----CCEEEEEcCCCChhhchhhHHHhcCcc--CC---CccccCceEEEEcccchhhhc-cHHH
Q 004850 66 PVWQQKEEFLQVLKA-----NQVIILVGETGSGKTTQIPQFVLEGVD--IE---TPDRRRKMMIACTQPRRVAAM-SVSR 134 (727)
Q Consensus 66 p~~~~q~~ii~~i~~-----g~~vii~g~TGSGKTt~~~~~ll~~~~--~~---~~~~~~~~~i~~t~p~~~~~~-~v~~ 134 (727)
.++++|.++++.+.+ ++.+++.++||||||.++..++..-.. +. .....+.++++|+..+..|.. ...+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 578999999998865 467889999999999986544322110 00 001233455666666555543 2211
Q ss_pred HHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhc-----cccccCCeeEEeeccCcChhhHHHHHHHHHH
Q 004850 135 RVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT-----DPLLERYKVIVLDEAHERTLATDVLFGLLKE 209 (727)
Q Consensus 135 ~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~-----~~ll~~~~~lIlDEaher~~~~d~ll~ll~~ 209 (727)
..+ ..++.. ..........|.++|++.+...... .-...++++||+|||| +....+ ....+.
T Consensus 258 ----~~~----~~~~~~--~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~ 324 (590)
T 3h1t_A 258 ----PFG----DARHKI--EGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWRE 324 (590)
T ss_dssp ----TTC----SSEEEC--CC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHH
T ss_pred ----hcc----hhhhhh--hccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHH
Confidence 111 111110 0111234567888999998776431 1125678999999999 444331 123344
Q ss_pred HHHhCCCCEEEEEcCccc---HHHHHhhhcCCCeeee-------CCCccceeeeeccCC---------------------
Q 004850 210 VLKNRPDLKLVVMSATLE---AEKFQGYFYGAPLMKV-------PGRLHPVEIFYTQEP--------------------- 258 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~---~~~~~~~f~~~p~i~v-------~g~~~~v~~~y~~~~--------------------- 258 (727)
++...+..+++++|||.. ......+|+. ++... .|...|.........
T Consensus 325 il~~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFEPAFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCCcceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 444455688999999973 2334555543 33221 111111111111000
Q ss_pred -----cc---------cHHHHHHHHHHHHhh-cCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCC
Q 004850 259 -----ER---------DYLEAAIRTVVQIHM-CEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLP 323 (727)
Q Consensus 259 -----~~---------~~~~~~~~~l~~i~~-~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 323 (727)
.. +........+..... ....+++|||+++++.++.+++.|........... .-.+..+||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~ 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEEG 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCCh
Confidence 00 011112222322222 24457999999999999999999987532211111 123678999976
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcc
Q 004850 324 PAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGR 403 (727)
Q Consensus 324 ~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GR 403 (727)
. +|.++++.|++|.. ....|++||+++++|||+|+|++||.++. |-|...|+||+||
T Consensus 483 ~-~r~~~l~~F~~~~~----~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR 539 (590)
T 3h1t_A 483 K-IGKGHLSRFQELET----STPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGR 539 (590)
T ss_dssp H-HHHHHHHHHHCTTC----CCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTT
T ss_pred H-HHHHHHHHHhCCCC----CCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhh
Confidence 4 68899999988610 02238999999999999999999999888 8899999999999
Q ss_pred cCCCCC
Q 004850 404 AGRTQP 409 (727)
Q Consensus 404 aGR~~~ 409 (727)
+||.++
T Consensus 540 ~~R~~~ 545 (590)
T 3h1t_A 540 GTRLRE 545 (590)
T ss_dssp SCCCBG
T ss_pred hcccCc
Confidence 999854
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.85 E-value=2.4e-20 Score=211.42 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=120.7
Q ss_pred EEEEEcCccc--HHHHHhhhcCCCeeeeCCCcc--ceee-eeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHH
Q 004850 218 KLVVMSATLE--AEKFQGYFYGAPLMKVPGRLH--PVEI-FYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEI 292 (727)
Q Consensus 218 ~vil~SATl~--~~~~~~~f~~~p~i~v~g~~~--~v~~-~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei 292 (727)
++..||+|+. .+.|.+.+ +..++.+|...- .++. ........++..+++..+...+. ...++|||+++++.+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhh--CCCCEEEEECCHHHH
Confidence 5677777773 34444433 355666654211 1111 01112344566666666655543 245799999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccC--------Ce
Q 004850 293 EDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTID--------GI 364 (727)
Q Consensus 293 ~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp--------~V 364 (727)
+.+++.|... ++....|||+..+.++..+...++.| .|+||||+|+||+||+ |+
T Consensus 488 E~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g---------~VtVATdmAgRGtDI~lg~~V~~~Gg 549 (822)
T 3jux_A 488 ELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG---------MVTIATNMAGRGTDIKLGPGVAELGG 549 (822)
T ss_dssp HHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT---------CEEEEETTTTTTCCCCCCTTTTTTTS
T ss_pred HHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC---------eEEEEcchhhCCcCccCCcchhhcCC
Confidence 9999999864 68889999996666665555556554 5999999999999998 77
Q ss_pred EEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCceEEEecchhhh
Q 004850 365 VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 365 ~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
.|||++++ |-|...|.||+|||||. .||.++.|++.++.
T Consensus 550 lhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 550 LCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 89999999 99999999999999999 89999999987663
No 58
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.84 E-value=5.3e-21 Score=183.88 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=120.7
Q ss_pred cceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
..++++|...+..+++..+...+.. ...+++|||+++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 8 ~~i~~~~~~~~~~~K~~~L~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 8 RNIEHAVIQVREENKFSLLKDVLMT----ENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHH----HCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred ccceEEEEECChHHHHHHHHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHH
Confidence 4578888888877777665554332 35678999999999999999999874 6789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
..+++.|+.| ..+|||||+++++|+|+|++++||++|+ |.+.++|.||+|||||.
T Consensus 75 ~~~~~~f~~g-------~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 75 FDVMNEFKRG-------EYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRA 129 (163)
T ss_dssp HHHHHHHHTT-------SCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCT
T ss_pred HHHHHHHHcC-------CCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcC
Confidence 9999999998 7899999999999999999999999999 99999999999999999
Q ss_pred -CCceEEEecchhhhc
Q 004850 408 -QPGKCFRLYTEKSFN 422 (727)
Q Consensus 408 -~~G~~~~L~t~~~~~ 422 (727)
++|.|+.|+++.+..
T Consensus 130 g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 130 GNKGKAISFVTAFEKR 145 (163)
T ss_dssp TCCEEEEEEECGGGHH
T ss_pred CCCceEEEEecHHHHH
Confidence 799999999976643
No 59
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.9e-21 Score=185.27 Aligned_cols=136 Identities=15% Similarity=0.275 Sum_probs=115.1
Q ss_pred cceeeeeccCCccc-HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHH
Q 004850 248 HPVEIFYTQEPERD-YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAM 326 (727)
Q Consensus 248 ~~v~~~y~~~~~~~-~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 326 (727)
..++++|...+..+ ++. .+..+......+++|||+++++.++.+++.|... ++.+..+||+|++.+
T Consensus 6 ~~i~q~~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQ----ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQ 72 (175)
T ss_dssp CCEEEEEEECSSHHHHHH----HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHH
T ss_pred CCceEEEEEcCChHhHHH----HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHH
Confidence 35788888776544 444 3444444456789999999999999999999763 578999999999999
Q ss_pred HhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCcccccccc------ccHhhHHhh
Q 004850 327 QQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSP------ISKASAHQR 400 (727)
Q Consensus 327 r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~p------is~~~~~qR 400 (727)
|..+++.|++| ..+|||||+++++|||+|++++||++|+ | .+.++|+||
T Consensus 73 R~~~~~~f~~g-------~~~vLvaT~~~~~Gid~~~~~~Vi~~d~------------------p~~~~~~~~~~~~~qr 127 (175)
T 2rb4_A 73 RASIIQRFRDG-------KEKVLITTNVCARGIDVKQVTIVVNFDL------------------PVKQGEEPDYETYLHR 127 (175)
T ss_dssp HHHHHHHHHTT-------SCSEEEECCSCCTTTCCTTEEEEEESSC------------------CC--CCSCCHHHHHHH
T ss_pred HHHHHHHHHcC-------CCeEEEEecchhcCCCcccCCEEEEeCC------------------CCCccccCCHHHHHHH
Confidence 99999999998 7899999999999999999999999998 6 899999999
Q ss_pred hcccCCC-CCceEEEecchhhh
Q 004850 401 SGRAGRT-QPGKCFRLYTEKSF 421 (727)
Q Consensus 401 ~GRaGR~-~~G~~~~L~t~~~~ 421 (727)
+|||||. ++|.||.|++..+.
T Consensus 128 ~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 128 IGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp HCBC----CCEEEEEEECGGGH
T ss_pred hcccccCCCCceEEEEEccchH
Confidence 9999999 88999999998764
No 60
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.83 E-value=5.5e-21 Score=184.12 Aligned_cols=136 Identities=20% Similarity=0.370 Sum_probs=113.2
Q ss_pred ceeeeeccCCccc-HHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 249 PVEIFYTQEPERD-YLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 249 ~v~~~y~~~~~~~-~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
.++++|...+..+ +.+.+... ....+.+++|||+++.+.++.+++.|... ++.+..+||+|++.+|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~l----l~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r 69 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDL----YDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQER 69 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHH----HHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHH----HHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHH
Confidence 4677777766665 55544333 33346789999999999999999999874 5789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
.++++.|+.| ..+|||||+++++|+|+|++++||++|+ |.+.++|.||+|||||.
T Consensus 70 ~~~~~~f~~g-------~~~vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~ 124 (165)
T 1fuk_A 70 DTIMKEFRSG-------SSRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRF 124 (165)
T ss_dssp HHHHHHHHTT-------SCSEEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC--
T ss_pred HHHHHHHHcC-------CCEEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccC
Confidence 9999999998 7899999999999999999999999999 99999999999999999
Q ss_pred -CCceEEEecchhhhc
Q 004850 408 -QPGKCFRLYTEKSFN 422 (727)
Q Consensus 408 -~~G~~~~L~t~~~~~ 422 (727)
++|.||.|+++.+..
T Consensus 125 g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 125 GRKGVAINFVTNEDVG 140 (165)
T ss_dssp ---CEEEEEEETTTHH
T ss_pred CCCceEEEEEcchHHH
Confidence 789999999976643
No 61
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=6.8e-21 Score=184.84 Aligned_cols=134 Identities=13% Similarity=0.258 Sum_probs=118.1
Q ss_pred cceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
..++++|...+..++...+...+ .....+++|||+++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll----~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLL----DVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEER 70 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHH----HHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHH
T ss_pred CCeEEEEEECChHHHHHHHHHHH----HhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHH
Confidence 45788888887777766554433 3345679999999999999999999874 5789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
..+++.|++| ..+|||||+++++|+|+|++++||++|+ |.+.++|.||+|||||.
T Consensus 71 ~~~~~~f~~g-------~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~ 125 (172)
T 1t5i_A 71 LSRYQQFKDF-------QRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRF 125 (172)
T ss_dssp HHHHHHHHTT-------SCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGG
T ss_pred HHHHHHHHCC-------CCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccC
Confidence 9999999998 8899999999999999999999999999 99999999999999999
Q ss_pred -CCceEEEecchh
Q 004850 408 -QPGKCFRLYTEK 419 (727)
Q Consensus 408 -~~G~~~~L~t~~ 419 (727)
++|.|+.|++..
T Consensus 126 g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 126 GTKGLAITFVSDE 138 (172)
T ss_dssp GCCCEEEEEECSH
T ss_pred CCCcEEEEEEcCh
Confidence 889999999865
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.83 E-value=8.3e-21 Score=230.52 Aligned_cols=120 Identities=12% Similarity=0.107 Sum_probs=102.5
Q ss_pred HHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCC--c
Q 004850 269 TVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPG--R 346 (727)
Q Consensus 269 ~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~--~ 346 (727)
.+..+......+++|||+++...++.+++.|... .++.+..+||+|++.+|.++++.|+.| . .
T Consensus 493 ~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g-------~~~~ 557 (968)
T 3dmq_A 493 WLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEE-------DTGA 557 (968)
T ss_dssp HHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHST-------TSSC
T ss_pred HHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCC-------CCcc
Confidence 3444444456789999999999999999999853 267899999999999999999999988 5 8
Q ss_pred EEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-CCc--eEEEecchhhh
Q 004850 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-QPG--KCFRLYTEKSF 421 (727)
Q Consensus 347 kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~~G--~~~~L~t~~~~ 421 (727)
+|||||+++++|||+|++.+||+++. |-+.+.|.||+||+||. +.| .+|+++.+...
T Consensus 558 ~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 558 QVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp EEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred cEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 99999999999999999999999999 89999999999999999 556 45666655443
No 63
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=186.28 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=114.4
Q ss_pred cceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
..+.++|...+..+++..+.. +... ..+++|||+++++.++.+++.|... ++.+..+||++++.+|
T Consensus 28 ~~i~q~~~~~~~~~K~~~L~~----~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R 93 (191)
T 2p6n_A 28 LDVIQEVEYVKEEAKMVYLLE----CLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEER 93 (191)
T ss_dssp CCSEEEEEECCGGGHHHHHHH----HHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHH
T ss_pred cCceEEEEEcChHHHHHHHHH----HHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHH
Confidence 357777777777777655443 3332 3568999999999999999999875 5789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
.++++.|+.| ..+||||||++++|||+|++++||++++ |.+.++|+||+|||||.
T Consensus 94 ~~~l~~F~~g-------~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 94 TKAIEAFREG-------KKDVLVATDVASKGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCS 148 (191)
T ss_dssp HHHHHHHHHT-------SCSEEEECHHHHTTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC-
T ss_pred HHHHHHHhcC-------CCEEEEEcCchhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccC
Confidence 9999999988 7899999999999999999999999999 99999999999999999
Q ss_pred -CCceEEEecchh
Q 004850 408 -QPGKCFRLYTEK 419 (727)
Q Consensus 408 -~~G~~~~L~t~~ 419 (727)
++|.|+.|++..
T Consensus 149 g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 149 GNTGIATTFINKA 161 (191)
T ss_dssp --CCEEEEEECTT
T ss_pred CCCcEEEEEEcCc
Confidence 789999999865
No 64
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=184.67 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=106.6
Q ss_pred cceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHH
Q 004850 248 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQ 327 (727)
Q Consensus 248 ~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 327 (727)
..++++|...+..+++..+...+.. ..+.+++|||+++++.++.+++.|... ++.+..+||++++.+|
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDR 85 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------
T ss_pred CCceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHH
Confidence 4578888888777777665554433 125678999999999999999999874 6789999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC
Q 004850 328 QKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT 407 (727)
Q Consensus 328 ~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~ 407 (727)
..+++.|+.| ..+|||||+++++|+|+|++++||++++ |.+.++|.||+|||||.
T Consensus 86 ~~~~~~f~~g-------~~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 86 EEALHQFRSG-------KSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp CHHHHHHHHT-------SSSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCT
T ss_pred HHHHHHHHcC-------CCeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCC
Confidence 9999999988 7899999999999999999999999999 99999999999999999
Q ss_pred -CCceEEEecchhhhc
Q 004850 408 -QPGKCFRLYTEKSFN 422 (727)
Q Consensus 408 -~~G~~~~L~t~~~~~ 422 (727)
++|.|+.|+++.+..
T Consensus 141 g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 141 GNLGLATSFFNERNIN 156 (185)
T ss_dssp TSCEEEEEEECGGGGG
T ss_pred CCCcEEEEEEchhhHH
Confidence 799999999987653
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.80 E-value=2.6e-19 Score=180.76 Aligned_cols=204 Identities=15% Similarity=0.208 Sum_probs=132.1
Q ss_pred CcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEE
Q 004850 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (727)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (727)
+....+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.+++
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~-~~~~~~~~lil 88 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-TSVKAPQALML 88 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC-TTCCSCCEEEE
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHh-ccCCCceEEEE
Confidence 34466899999999999999999999999999999999999999999999999999998877765431 11111234444
Q ss_pred EEcccchhhhccHHHHHHHhccccccceeceeeeecccc-ccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcCh
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS-SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~-~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~ 197 (727)
+|++.+..+.......+....+..+....|.....+... ..+..|.++|+|.+...+..... +.++++||+||||. .
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~-~ 167 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-M 167 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-H
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH-H
Confidence 444444444444444444444444444445332222211 12467889999999888766543 78899999999994 4
Q ss_pred hhHHHHHHHHHHHHH-hCCCCEEEEEcCcccH--HHHH-hhhcCCCeeeeCCC
Q 004850 198 LATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQ-GYFYGAPLMKVPGR 246 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~--~~~~-~~f~~~p~i~v~g~ 246 (727)
.+.++. ..+..+.. ..++.+++++|||++. ..+. .|+.++..+.+.+.
T Consensus 168 ~~~~~~-~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 168 LSSGFK-EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHTTCH-HHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhhhhH-HHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 443332 33333333 3457899999999964 3444 45544444544443
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.79 E-value=6.3e-19 Score=199.81 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=93.0
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcccc
Q 004850 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (727)
Q Consensus 278 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~ 357 (727)
.+.++|||+.....++.+.+.|.... ++.+..+||++++.+|.++++.|.++. ..+.+|+||+++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~-----~~~vil~st~~~~~ 406 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNP-----SVKFIVLSVKAGGF 406 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCT-----TCCCCEEECCCC-C
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCC-----CCCEEEEecccccC
Confidence 46689999999999999999997642 466788999999999999999998761 02348999999999
Q ss_pred CcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecchhhhc
Q 004850 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFN 422 (727)
Q Consensus 358 gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~~~~~ 422 (727)
|||++++++||.++. |-+.+.+.||+||++|. ++..+|+|+++...+
T Consensus 407 Glnl~~~~~vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 407 GINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp CCCCTTCSEEEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred CCchhhCCEEEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 999999999999998 88899999999999998 345679998876543
No 67
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=187.39 Aligned_cols=199 Identities=21% Similarity=0.198 Sum_probs=136.8
Q ss_pred CcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEE
Q 004850 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (727)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (727)
+....+|+++++++.+.+.++..++..++++|.++++.+.+|+++++.+|||||||+++..++++... ......+.+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~-~~~~~~~~lil 117 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALL-ETPQRLFALVL 117 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHH-HSCCSSCEEEE
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHh-cCCCCceEEEE
Confidence 34467899999999999999999999999999999999999999999999999999998887765431 11111224445
Q ss_pred EEcccchhhhccHHHHHHHhccccccceeceeeeecc--ccccCccccccChHHHHHHHhccc--cccCCeeEEeeccCc
Q 004850 120 ACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHE 195 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEahe 195 (727)
+|++.+..+.....+.+....+..++..+|....... ....+..|.++|+|++.+.+.... .+.++++||+||||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah- 196 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD- 196 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-
Confidence 5555555554444455555555555444443221111 112356889999999998876533 47899999999999
Q ss_pred ChhhHHHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhhhcCCCee
Q 004850 196 RTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFYGAPLM 241 (727)
Q Consensus 196 r~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~f~~~p~i 241 (727)
+..+.++... +..+... .++.++++||||++. ..+++.+.+.|+.
T Consensus 197 ~l~~~~~~~~-l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 197 RILNMDFETE-VDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp HHHHTTCHHH-HHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred hhhccChHHH-HHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 4555544333 3334433 347899999999964 4555554455543
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.79 E-value=1.1e-18 Score=210.84 Aligned_cols=313 Identities=10% Similarity=0.040 Sum_probs=188.8
Q ss_pred CCchHHHHHHHHhhhc--------------CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhc
Q 004850 65 LPVWQQKEEFLQVLKA--------------NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAM 130 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~--------------g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~ 130 (727)
..+.++|.++++.+.+ ++..++..+||||||..+. ++.... .......+.++++++..+..|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~-~l~~ll-~~~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF-KAARLA-TELDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH-HHHHHH-TTCTTCCEEEEEECGGGCCHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH-HHHHHH-HhcCCCceEEEEeCcHHHHHHHH
Confidence 3478899999988764 3568889999999999863 222211 11111123444555555555543
Q ss_pred cHHHHHHHhccccccceeceeee---eccccccCccccccChHHHHHHHhcc---ccccCCeeEEeeccCcChhhHHHHH
Q 004850 131 SVSRRVAEEMDVTIGEEVGYSIR---FEDCSSARTVLKYLTDGMLLREAMTD---PLLERYKVIVLDEAHERTLATDVLF 204 (727)
Q Consensus 131 ~v~~~v~~~~~~~~~~~vg~~~~---~~~~~~~~~~i~~lT~G~l~r~~~~~---~ll~~~~~lIlDEaher~~~~d~ll 204 (727)
. .+.......+ .|.... ..........|.++|++.+...+... ..+.+..+||+|||| |+...+.
T Consensus 348 ~---~f~~f~~~~v---~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~-- 418 (1038)
T 2w00_A 348 K---EYQRFSPDSV---NGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA-- 418 (1038)
T ss_dssp H---HHHTTSTTCS---SSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH--
T ss_pred H---HHHHhccccc---ccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH--
Confidence 3 3332211111 111100 00111235678899999998865432 246788999999999 5655443
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-------HHHHhhhcCCCeeee-------CCCccceeeeeccCC------------
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-------EKFQGYFYGAPLMKV-------PGRLHPVEIFYTQEP------------ 258 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-------~~~~~~f~~~p~i~v-------~g~~~~v~~~y~~~~------------ 258 (727)
.+.+....|+.+++.||||... .....+|+. ++... .|..-|+.+.|....
T Consensus 419 --~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~ 495 (1038)
T 2w00_A 419 --QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDE 495 (1038)
T ss_dssp --HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCH
T ss_pred --HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccH
Confidence 3344445667899999999842 133455543 22111 233445544443210
Q ss_pred -------------cccHHHHHHHHHHHHhh-c-------CCCCCEEEecCCHHHHHHHHHHHHHHHhhcC---CCCCCeE
Q 004850 259 -------------ERDYLEAAIRTVVQIHM-C-------EPSGDILVFLTGEEEIEDACRKITKEITNMG---DQVGPVK 314 (727)
Q Consensus 259 -------------~~~~~~~~~~~l~~i~~-~-------~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~---~~~~~~~ 314 (727)
..+.+..++..++.... . ...+++|||++++..+..+++.|......+. ....++.
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 01112222232322111 1 1235799999999999999999987642210 1112244
Q ss_pred E-EEecCC----------C----------CHH-----------------------------HHhhhcCCCCCCCCCCCCC
Q 004850 315 V-VPLYST----------L----------PPA-----------------------------MQQKIFEPAPPPSKEGGPP 344 (727)
Q Consensus 315 v-~~lh~~----------l----------~~~-----------------------------~r~~~~~~~~~g~~~~~~~ 344 (727)
+ +.+||+ + ++. +|..+.+.|+.|
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g------- 648 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ------- 648 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-------
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC-------
Confidence 4 455642 2 221 366778888888
Q ss_pred CcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCCCC-----ceEEEecc
Q 004850 345 GRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQP-----GKCFRLYT 417 (727)
Q Consensus 345 ~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~-----G~~~~L~t 417 (727)
..+|||+||++.||+|+|.+ .|+..+. |.+...|+||+||+||..+ |.++.+.+
T Consensus 649 ~i~ILIvvd~lltGfDiP~l-~tlylDk------------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 649 DIDLLIVVGMFLTGFDAPTL-NTLFVDK------------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSSEEEESSTTSSSCCCTTE-EEEEEES------------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCeEEEEcchHHhCcCcccc-cEEEEcc------------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 78999999999999999999 6787777 8999999999999999943 66776665
No 69
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=187.49 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=139.9
Q ss_pred ccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcC--CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEE
Q 004850 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKAN--QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMI 119 (727)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i 119 (727)
+..+|+++++++.+.+.+...++..++++|.++++.+..| ++++++||||||||+++..++++... ......+.+++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~-~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE-PANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC-TTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh-ccCCCceEEEE
Confidence 3568999999999999999999999999999999999987 99999999999999999888876542 22222345666
Q ss_pred EEcccchhhhccHHHHHHHhc-cccccceeceeeeeccccccCccccccChHHHHHHHhccc--cccCCeeEEeeccCcC
Q 004850 120 ACTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAHER 196 (727)
Q Consensus 120 ~~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEaher 196 (727)
+||+++..|...+++.+.... +..+...+|... ..........|.++|||++..++.... .+.++++||||||| +
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~ 246 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-V 246 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCC-CCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-H
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCcc-HhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-H
Confidence 677766666666665555432 233333333221 111123356789999999999886533 38899999999999 4
Q ss_pred hhhHHHHHHHHHHHHHh-CCCCEEEEEcCccc--HHHHHhhhcCCCee
Q 004850 197 TLATDVLFGLLKEVLKN-RPDLKLVVMSATLE--AEKFQGYFYGAPLM 241 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~--~~~~~~~f~~~p~i 241 (727)
+++...+...+..+... .++.|+++||||++ +..+++.+...|++
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~ 294 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeE
Confidence 55433344445555443 34789999999996 45666665555543
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.78 E-value=4.2e-19 Score=181.25 Aligned_cols=201 Identities=16% Similarity=0.165 Sum_probs=131.2
Q ss_pred CCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCce
Q 004850 38 NNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKM 117 (727)
Q Consensus 38 ~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~ 117 (727)
+.+.+..+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.||||||||+++..+++.... ......+.+
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~-~~~~~~~~l 102 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLE-IEFKETQAL 102 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCC-TTSCSCCEE
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHH-hcCCCceEE
Confidence 3345567899999999999999999999999999999999999999999999999999998888776541 111112344
Q ss_pred EEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc---cccCccccccChHHHHHHHhcccc-ccCCeeEEeecc
Q 004850 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC---SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEA 193 (727)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~---~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEa 193 (727)
+++|++.+..+....++.+....+..+...+|........ ......|.++|+|++.+.+..... +.++++||+|||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 4555555544444444444443344444444432211111 112367889999999988766543 788999999999
Q ss_pred CcChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcccH--HHHHhhhcCCCee
Q 004850 194 HERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA--EKFQGYFYGAPLM 241 (727)
Q Consensus 194 her~~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~--~~~~~~f~~~p~i 241 (727)
|. ..+.++. ..+..+.. ..++.+++++|||++. ..+.+.+.+.|+.
T Consensus 183 h~-~~~~~~~-~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 183 DE-MLSRGFK-DQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp HH-HHHTTCH-HHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred hH-hhccCcH-HHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEE
Confidence 94 4443322 22333333 3347899999999964 4455544444543
No 71
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=6.1e-19 Score=205.73 Aligned_cols=169 Identities=20% Similarity=0.175 Sum_probs=124.5
Q ss_pred CCEEEEEcCcccHHHHHhhhcCCCeeee----CCCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 004850 216 DLKLVVMSATLEAEKFQGYFYGAPLMKV----PGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE 291 (727)
Q Consensus 216 ~~~vil~SATl~~~~~~~~f~~~p~i~v----~g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~e 291 (727)
..+++++|||.....+.. . ..++.. .+...|. +.. .+.......++..+.... ...+++|||++++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v--~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T-DEMVEQIIRPTGLLDPL-IDV--RPIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C-SSCEEECCCTTCCCCCE-EEE--ECSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh--h-hCeeeeeecccCCCCCe-EEE--ecccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 578999999997543321 0 111111 1122222 111 112233344444433322 245689999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCC
Q 004850 292 IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG 371 (727)
Q Consensus 292 i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g 371 (727)
++.+++.|... ++.+..+||++++.+|.++++.|+.| ..+|+||||++++|+|+|+|++||+++
T Consensus 458 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g-------~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 458 SEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLG-------KYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHT-------SCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred HHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcC-------CeEEEEecchhhCCcccCCCCEEEEeC
Confidence 99999999874 57788999999999999999999988 789999999999999999999999988
Q ss_pred CccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhhh
Q 004850 372 FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF 421 (727)
Q Consensus 372 ~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~~ 421 (727)
..+. |. |.|..+|+||+|||||.++|.|+.++++.+.
T Consensus 522 ~d~~-------G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 522 ADKE-------GF------LRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp TTCC-------TT------TTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred cccc-------cC------CCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 6222 11 7899999999999999999999999987543
No 72
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.65 E-value=1.2e-20 Score=182.66 Aligned_cols=135 Identities=14% Similarity=0.243 Sum_probs=114.0
Q ss_pred eeeeeccCCc-ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHh
Q 004850 250 VEIFYTQEPE-RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQ 328 (727)
Q Consensus 250 v~~~y~~~~~-~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 328 (727)
++++|...+. .+++.. +..+......+++|||++++..++.+++.|... ++.+..+||+|++.+|.
T Consensus 4 i~~~~~~~~~~~~k~~~----l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~ 70 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTAL----LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRN 70 (170)
Confidence 4555555544 444433 333333345678999999999999999999764 67899999999999999
Q ss_pred hhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-
Q 004850 329 KIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT- 407 (727)
Q Consensus 329 ~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~- 407 (727)
.+++.|+.| ..+|||||+++++|+|+|++++||++|+ |.|.++|.||+|||||.
T Consensus 71 ~~~~~f~~g-------~~~vLvaT~~~~~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g 125 (170)
T 2yjt_D 71 EAIKRLTEG-------RVNVLVATDVAARGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAG 125 (170)
Confidence 999999998 7899999999999999999999999999 99999999999999999
Q ss_pred CCceEEEecchhhhc
Q 004850 408 QPGKCFRLYTEKSFN 422 (727)
Q Consensus 408 ~~G~~~~L~t~~~~~ 422 (727)
++|.|+.+++..+..
T Consensus 126 ~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 126 RKGTAISLVEAHDHL 140 (170)
Confidence 789999999887654
No 73
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.77 E-value=8.3e-19 Score=176.64 Aligned_cols=195 Identities=14% Similarity=0.179 Sum_probs=131.8
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.+|+++++++.+.+.+.+.++..++++|.++++.+.+|+++++.+|||||||+++..++++... ......+.++++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~-~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK-PERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCC-TTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH-hCcCCceEEEEcCcH
Confidence 4699999999999999999999999999999999999999999999999999998887776541 111122345555555
Q ss_pred cchhhhccHHHHHHHhc----cccccceeceeeeecccc--ccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcC
Q 004850 124 PRRVAAMSVSRRVAEEM----DVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHER 196 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~----~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher 196 (727)
.+..+.....+.+.... +..+....|......... ..+..|.++|+|++.+.+..... +.+++++|+||||.
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~- 161 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL- 161 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-
Confidence 55555544444444433 223333333221111111 12457889999999988766543 78999999999994
Q ss_pred hhhHHHHHHHHHHHHHhC-CCCEEEEEcCcccH--HHHHhhhcCCCee
Q 004850 197 TLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQGYFYGAPLM 241 (727)
Q Consensus 197 ~~~~d~ll~ll~~l~~~~-~~~~vil~SATl~~--~~~~~~f~~~p~i 241 (727)
..+.+ +...+..+.... ++.+++++|||++. ..+.+.+.+.|..
T Consensus 162 ~~~~~-~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 208 (219)
T 1q0u_A 162 MLDMG-FITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTF 208 (219)
T ss_dssp HHHTT-CHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEE
T ss_pred HhhhC-hHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeE
Confidence 44333 233444444443 47899999999953 4455444445544
No 74
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.77 E-value=6.8e-19 Score=180.22 Aligned_cols=200 Identities=17% Similarity=0.142 Sum_probs=141.5
Q ss_pred CCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccC----CCcccc
Q 004850 39 NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI----ETPDRR 114 (727)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~----~~~~~~ 114 (727)
.+.+..+|+++++++.+.+.+.+.++..++++|.++++.+.+|+++++.+|||||||+.+..+++..... ......
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 4556778999999999999999999999999999999999999999999999999999987766643211 111223
Q ss_pred CceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccc--ccCccccccChHHHHHHHhcccc-ccCCeeEEee
Q 004850 115 RKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDPL-LERYKVIVLD 191 (727)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlD 191 (727)
+.++++|++.+..|.....+.+....+..+....|......... ..+..|.++|+|++...+..... +.++++||+|
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 35666677777666666666666666655555444322111111 12467889999999988876554 8899999999
Q ss_pred ccCcChhhHHHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhhhcCCCe
Q 004850 192 EAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFYGAPL 240 (727)
Q Consensus 192 Eaher~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~f~~~p~ 240 (727)
||| +..+.++ ...+..+... .++.++++||||++. ..+++.+.+.|+
T Consensus 184 Eah-~l~~~~~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 184 EAD-RMLDMGF-EPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp THH-HHHHTTC-HHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CHH-HHhhhCc-HHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 999 3444443 3334444443 358899999999964 555555544454
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.77 E-value=1.2e-18 Score=203.35 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=124.0
Q ss_pred CCEEEEEcCcccHHHHHhhhcCCCeeeeC----CCccceeeeeccCCcccHHHHHHHHHHHHhhcCCCCCEEEecCCHHH
Q 004850 216 DLKLVVMSATLEAEKFQGYFYGAPLMKVP----GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEE 291 (727)
Q Consensus 216 ~~~vil~SATl~~~~~~~~f~~~p~i~v~----g~~~~v~~~y~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~e 291 (727)
..+++++|||.....+.. ...++... |...|.- .. .+.......++..+.... ...+++|||++++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~r~~~l~~p~i-~v--~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH---SGRVVEQIIRPTGLLDPLV-RV--KPTENQILDLMEGIRERA--ARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH---CSEEEEECSCTTCCCCCEE-EE--ECSTTHHHHHHHHHHHHH--HTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh---hhCeeeeeeccCCCCCCeE-EE--ecccchHHHHHHHHHHHH--hcCCEEEEEECCHHH
Confidence 568999999997543321 01111111 1122221 11 112233344444443322 235689999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCC
Q 004850 292 IEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG 371 (727)
Q Consensus 292 i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g 371 (727)
++.+++.|... ++.+..+||++++.+|.++++.|+.| ..+|+||||++++|+|+|+|++||+++
T Consensus 452 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g-------~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 452 AEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLG-------HYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTT-------SCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred HHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcC-------CceEEEccChhhcCccCCCCCEEEEeC
Confidence 99999999874 57788999999999999999999988 789999999999999999999999998
Q ss_pred CccceeeccccCccccccccccHhhHHhhhcccCCCCCceEEEecchhh
Q 004850 372 FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKS 420 (727)
Q Consensus 372 ~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~~~G~~~~L~t~~~ 420 (727)
..+.. . |.|..+|+||+|||||.++|.|+.++++.+
T Consensus 516 ~d~~G-------~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEG-------F------LRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp TTSCS-------G------GGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred CcccC-------C------CCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 63221 1 789999999999999999999999998654
No 76
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=9.5e-19 Score=177.72 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=128.4
Q ss_pred cccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEE
Q 004850 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIA 120 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~ 120 (727)
.+..+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||.++..+++... .......+.++++
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l-~~~~~~~~~lil~ 99 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL-VLENLSTQILILA 99 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHC-CTTSCSCCEEEEC
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH-HhcCCCceEEEEe
Confidence 344579999999999999999999999999999999999999999999999999999887776543 1111112344455
Q ss_pred EcccchhhhccHHHHHHHhc-cccccceeceeeeec-cccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcCh
Q 004850 121 CTQPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFE-DCSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (727)
Q Consensus 121 ~t~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~-~~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~ 197 (727)
|++++..+.....+.+.... +..+....|.....+ .....+..|.++|+|++...+....+ +.++++||+||||. .
T Consensus 100 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~ 178 (230)
T 2oxc_A 100 PTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-L 178 (230)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-H
T ss_pred CCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-h
Confidence 55555444444443333222 333333333221111 01113567889999999988765543 78899999999994 4
Q ss_pred hhHHHHHHHHHHHHHhCC-CCEEEEEcCcccHH--HHH-hhhcC
Q 004850 198 LATDVLFGLLKEVLKNRP-DLKLVVMSATLEAE--KFQ-GYFYG 237 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~~~-~~~vil~SATl~~~--~~~-~~f~~ 237 (727)
.+.+.+...+..+....+ +.+++++|||++.+ .+. .|+.+
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~ 222 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRD 222 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSS
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCC
Confidence 443323444455544443 78999999999643 333 44443
No 77
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=1.9e-18 Score=171.98 Aligned_cols=194 Identities=19% Similarity=0.238 Sum_probs=129.8
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcc
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQ 123 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~ 123 (727)
.+|+++++++.+.+.+.+.++..++++|.++++.+.+|+++++.+|||||||..+..+++..... .....+.++++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcH
Confidence 36999999999999999999999999999999999999999999999999999888777654311 11112344455555
Q ss_pred cchhhhccHHHHHHHhc-cccccceeceeeeecc--ccccCccccccChHHHHHHHhccc-cccCCeeEEeeccCcChhh
Q 004850 124 PRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDP-LLERYKVIVLDEAHERTLA 199 (727)
Q Consensus 124 p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~-ll~~~~~lIlDEaher~~~ 199 (727)
.+..+.....+.+.... +..+....|.....+. .......|.++|+|.+...+.... .+.+++++|+||||. ..+
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~ 160 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLS 160 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTS
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHh
Confidence 44444444443333332 3333333332211111 112346788999999988876654 378999999999994 343
Q ss_pred HHHHHHHHHHHHHhCC-CCEEEEEcCcccH--HHHHhhhcCCCe
Q 004850 200 TDVLFGLLKEVLKNRP-DLKLVVMSATLEA--EKFQGYFYGAPL 240 (727)
Q Consensus 200 ~d~ll~ll~~l~~~~~-~~~vil~SATl~~--~~~~~~f~~~p~ 240 (727)
.+ +...+..+....+ +.+++++|||++. ..+.+.+.+.|+
T Consensus 161 ~~-~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 161 QD-FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp TT-THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred hC-cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 33 3344445544443 7899999999964 445544444554
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=176.17 Aligned_cols=202 Identities=21% Similarity=0.214 Sum_probs=131.8
Q ss_pred cccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCcc---CCCccccCce
Q 004850 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVD---IETPDRRRKM 117 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~---~~~~~~~~~~ 117 (727)
.+..+|+++++++.+.+.+..+++..++++|.++++.+.+|+++++.+|||||||+++..+++.... .......+.+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 3456799999999999999999999999999999999999999999999999999988876664321 1111112234
Q ss_pred EEEEcccchhhhccHHHHHHHhccccccceeceeeeecc-ccccCccccccChHHHHHHHhcc--ccccCCeeEEeeccC
Q 004850 118 MIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFED-CSSARTVLKYLTDGMLLREAMTD--PLLERYKVIVLDEAH 194 (727)
Q Consensus 118 ~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~-~~~~~~~i~~lT~G~l~r~~~~~--~ll~~~~~lIlDEah 194 (727)
+++|++.+..+.....+.+....+..++...|....... ....+..|.++|+|++.+.+... ..+.++++||+||||
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 444444444444444333333333344333443211111 11135678999999999887654 247899999999999
Q ss_pred cChhhHHHHHHHHHHHHHhC-CCCEEEEEcCcccH--HHHHhhhcCCC-eeeeC
Q 004850 195 ERTLATDVLFGLLKEVLKNR-PDLKLVVMSATLEA--EKFQGYFYGAP-LMKVP 244 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~~-~~~~vil~SATl~~--~~~~~~f~~~p-~i~v~ 244 (727)
+..+.++. ..+..+.... ++.+++++|||++. ..+++.+...| .+.+.
T Consensus 182 -~~~~~~~~-~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 182 -RILDMGFA-DTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp -HHHHTTTH-HHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred -HHhcCCcH-HHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 45444332 3334444433 47899999999964 45555444444 44443
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=174.51 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=133.8
Q ss_pred CCcccCCCCCC----CCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcccc
Q 004850 39 NNSLINRWNGK----PYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRR 114 (727)
Q Consensus 39 ~~~~~~~f~~~----~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~ 114 (727)
.+.++.+|+++ ++++.+.+.+.+.++..++++|.++++.+.+|+++++.+|||||||..+..+++...........
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 99 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 99 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc
Confidence 34556678876 89999999999999999999999999999999999999999999999888777654311111122
Q ss_pred CceEEEEcccchhhhccHHHHHHHhccccccceeceee---eeccccccCccccccChHHHHHHHhccc---cccCCeeE
Q 004850 115 RKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI---RFEDCSSARTVLKYLTDGMLLREAMTDP---LLERYKVI 188 (727)
Q Consensus 115 ~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~---~~~~~~~~~~~i~~lT~G~l~r~~~~~~---ll~~~~~l 188 (727)
+.++++|++.+..+....++.+....+..+....|... ........+..|.++|+|++...+.... .+.++++|
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~l 179 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWL 179 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEE
Confidence 34555555555555544444444433433333332211 1111223456789999999999887653 47899999
Q ss_pred EeeccCcChhh---HHHHHHHHHHHHHh--CCCCEEEEEcCccc--HHHHHhhhcCCCee
Q 004850 189 VLDEAHERTLA---TDVLFGLLKEVLKN--RPDLKLVVMSATLE--AEKFQGYFYGAPLM 241 (727)
Q Consensus 189 IlDEaher~~~---~d~ll~ll~~l~~~--~~~~~vil~SATl~--~~~~~~~f~~~p~i 241 (727)
|+||||. ..+ .++ ...+..+... .++.++++||||++ ...+.+.+.+.|+.
T Consensus 180 ViDEah~-~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 180 VVDESDK-LFEDGKTGF-RDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp EESSHHH-HHHHC--CH-HHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred EEeChHH-hcccccccH-HHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 9999995 333 233 3333333332 24789999999996 35566555555543
No 80
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=172.47 Aligned_cols=199 Identities=19% Similarity=0.167 Sum_probs=130.0
Q ss_pred CCcccCCCCC-CCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccC---CC--cc
Q 004850 39 NNSLINRWNG-KPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ET--PD 112 (727)
Q Consensus 39 ~~~~~~~f~~-~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~---~~--~~ 112 (727)
.+.+..+|++ +++++.+.+.+.+.++..++++|.++++.+.+|+++++.+|||||||+++..+++..... .. ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 4455678988 799999999999999999999999999999999999999999999999887766543210 00 11
Q ss_pred ccCceEEEEcccchhhhccHHHHHHHhc--cccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCee
Q 004850 113 RRRKMMIACTQPRRVAAMSVSRRVAEEM--DVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKV 187 (727)
Q Consensus 113 ~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~ 187 (727)
..+.++++ |++..+.++.+.+.... +..+....|........ ...+..|.++|+|++...+..... +.++++
T Consensus 94 ~~~~lil~---Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLT---PTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp CCSEEEEC---SSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred CCcEEEEe---CCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 12233344 55555555555554432 23333333322111111 112457889999999998776654 889999
Q ss_pred EEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH--HHHHhhhcCCCee
Q 004850 188 IVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA--EKFQGYFYGAPLM 241 (727)
Q Consensus 188 lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~--~~~~~~f~~~p~i 241 (727)
||+|||| +..+.++...+...+....++.++++||||++. ..+...+.+.|++
T Consensus 171 lViDEah-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 171 LVIDEAD-KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEECCHH-HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred EEEECHH-HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 9999999 445444333332223334458999999999964 4555544445543
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=9.1e-18 Score=168.98 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=128.7
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEc
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACT 122 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t 122 (727)
..+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++.... ......+.++++|+
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~-~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHT 91 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCC-CCTTCCCEEEECSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhh-ccCCCEEEEEEeCC
Confidence 45799999999999999999999899999999999999999999999999999988877775431 11111234444455
Q ss_pred ccchhhhccHHHHHHHhc-cccccceeceeeeecc---ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcCh
Q 004850 123 QPRRVAAMSVSRRVAEEM-DVTIGEEVGYSIRFED---CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERT 197 (727)
Q Consensus 123 ~p~~~~~~~v~~~v~~~~-~~~~~~~vg~~~~~~~---~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~ 197 (727)
+.+..+.....+.+.... +..+....|....... .......+.++|+|.+...+..... +.+++++|+||||. .
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~ 170 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK-M 170 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH-H
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH-H
Confidence 444444443333333322 3333333332110000 0112347889999999988766543 88999999999994 4
Q ss_pred hhHHHHHHHHHHHHHhC-CCCEEEEEcCccc--HHHHHhhhcCCCe
Q 004850 198 LATDVLFGLLKEVLKNR-PDLKLVVMSATLE--AEKFQGYFYGAPL 240 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~~-~~~~vil~SATl~--~~~~~~~f~~~p~ 240 (727)
.+...+...+..+.... ++.+++++|||++ ...+.+.+.+.|+
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~ 216 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM 216 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe
Confidence 33223444455555544 3789999999995 3555544434443
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=176.79 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=126.4
Q ss_pred CCCCCCC--CChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccC---CCccccCceE
Q 004850 44 NRWNGKP--YSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDI---ETPDRRRKMM 118 (727)
Q Consensus 44 ~~f~~~~--l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~---~~~~~~~~~~ 118 (727)
.+|.+++ +++.+.+.+...++..++++|.++++.+..|++++++||||||||+.+..+++....- ......+.++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3577776 8999999999999999999999999999999999999999999999888776643211 1111223444
Q ss_pred EEEcccchhhhccHHHHHHHhccccccceeceeeeecccc--ccCccccccChHHHHHHHhccc--cccCCeeEEeeccC
Q 004850 119 IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS--SARTVLKYLTDGMLLREAMTDP--LLERYKVIVLDEAH 194 (727)
Q Consensus 119 i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~--~~~~~i~~lT~G~l~r~~~~~~--ll~~~~~lIlDEah 194 (727)
++|++++..+.....+.+....+..++..+|......... ..+..|.++|+|++...+.... .+.++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 5555555555554444444444444444444332211111 1246789999999998887654 47899999999999
Q ss_pred cChhhHHHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhhhc
Q 004850 195 ERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFY 236 (727)
Q Consensus 195 er~~~~d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~f~ 236 (727)
+..+.++ ...+..+... .++.++++||||++. ..+++.+.
T Consensus 212 -~l~~~~~-~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 212 -RILDVGF-EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp -HHHHTTC-HHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred -HHhhhhH-HHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 4555443 3334444443 347899999999964 55665443
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.72 E-value=3.1e-17 Score=163.18 Aligned_cols=194 Identities=21% Similarity=0.215 Sum_probs=128.0
Q ss_pred CCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEccc
Q 004850 45 RWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQP 124 (727)
Q Consensus 45 ~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p 124 (727)
+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||+++..+++....-.. ....+..+++..|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-ERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-CTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-ccCCCCcEEEEEC
Confidence 589999999999999999999999999999999999999999999999999988877765431110 0001112333445
Q ss_pred chhhhccHHHHHHHhcc-ccccceeceeeeecc--ccccCccccccChHHHHHHHhcccc-ccCCeeEEeeccCcChhhH
Q 004850 125 RRVAAMSVSRRVAEEMD-VTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTDPL-LERYKVIVLDEAHERTLAT 200 (727)
Q Consensus 125 ~~~~~~~v~~~v~~~~~-~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIlDEaher~~~~ 200 (727)
++..+.++.+.+..... ..+....|....... .......+.++|+|.+...+..... +.+++++|+||||. ..+.
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~ 159 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSM 159 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhcc
Confidence 55555556666554432 222222222110000 0112467889999999888766443 78999999999994 3333
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEEcCcccH--HHHHhhhcCCCee
Q 004850 201 DVLFGLLKEVLKN-RPDLKLVVMSATLEA--EKFQGYFYGAPLM 241 (727)
Q Consensus 201 d~ll~ll~~l~~~-~~~~~vil~SATl~~--~~~~~~f~~~p~i 241 (727)
+ +...+..+... .++.+++++|||++. ..+.+.+.+.|++
T Consensus 160 ~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~ 202 (207)
T 2gxq_A 160 G-FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVL 202 (207)
T ss_dssp T-CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred c-hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeE
Confidence 3 23334444443 347899999999964 4555555455543
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.72 E-value=6e-18 Score=174.27 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=132.7
Q ss_pred ccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCC--------Cccc
Q 004850 42 LINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE--------TPDR 113 (727)
Q Consensus 42 ~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~--------~~~~ 113 (727)
+..+|+++++++.+.+.+...++..++++|.++++.+.+|+++++.+|||||||.++..+++...... ....
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 55679999999999999999999999999999999999999999999999999998877665432110 0111
Q ss_pred cCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc--cccCccccccChHHHHHHHhcccc-ccCCeeEEe
Q 004850 114 RRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC--SSARTVLKYLTDGMLLREAMTDPL-LERYKVIVL 190 (727)
Q Consensus 114 ~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~--~~~~~~i~~lT~G~l~r~~~~~~l-l~~~~~lIl 190 (727)
.+.++++|++++..+.....+.+....+..+....|........ ......|.++|+|++...+..... +.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 23455555555555555555555444444433333432111111 113457889999999988776553 789999999
Q ss_pred eccCcChhhHHHHHHHHHHHHHh--CC---CCEEEEEcCcccH--HHHHhhhcCCCee
Q 004850 191 DEAHERTLATDVLFGLLKEVLKN--RP---DLKLVVMSATLEA--EKFQGYFYGAPLM 241 (727)
Q Consensus 191 DEaher~~~~d~ll~ll~~l~~~--~~---~~~vil~SATl~~--~~~~~~f~~~p~i 241 (727)
||||. ..+.+ +...+..+... .+ +.++++||||++. ..+++.+...|+.
T Consensus 181 DEah~-~~~~~-~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 236 (253)
T 1wrb_A 181 DEADR-MLDMG-FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIF 236 (253)
T ss_dssp ETHHH-HHHTT-CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred eCHHH-HHhCc-hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEE
Confidence 99994 44333 23334444442 22 6799999999964 4555544444543
No 85
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=1.1e-15 Score=178.24 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=99.1
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcccc
Q 004850 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (727)
Q Consensus 278 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~ 357 (727)
...++|||+.....++.+...|... ++.+..+||++++.+|.++++.|..+. .....+|+||++++.
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~----~~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPS----SPEFIFMLSSKAGGC 481 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTT----CCCCEEEEEGGGSCT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCC----CCcEEEEEecccccC
Confidence 4668999999999999999988764 678899999999999999999998761 112358999999999
Q ss_pred CcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecchhhhcc
Q 004850 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 358 gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~~~~~~ 423 (727)
|||++++.+||.++. |-+.+.+.||+||++|. ++..+|+|++....+.
T Consensus 482 Glnl~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 482 GLNLIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp TCCCTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred CcccccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999999999999999 89999999999999998 3467999998765543
No 86
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.5e-16 Score=184.60 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=100.0
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcccc
Q 004850 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (727)
Q Consensus 278 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~ 357 (727)
...++|||+.....++.+...|... ++.+..+||+++..+|.++++.|..+. .....+|+||.+++.
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~----~~~~v~LlSt~agg~ 637 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPD----SNDFVFLLSTRAGGL 637 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTT----CSCCCEEEEHHHHTT
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCC----CCceEEEEecccccC
Confidence 4568999999999999999999765 678899999999999999999998751 113469999999999
Q ss_pred CcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC---CCceEEEecchhhhcc
Q 004850 358 SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT---QPGKCFRLYTEKSFNN 423 (727)
Q Consensus 358 gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~---~~G~~~~L~t~~~~~~ 423 (727)
|||++.+.+||.++. |-+...+.||.||++|. ++..+|+|+++...+.
T Consensus 638 GlNL~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 638 GINLMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp TCCCTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred CCCccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 999999999999998 88889999999999997 5678999999876644
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.49 E-value=1.6e-12 Score=150.42 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=94.0
Q ss_pred hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
.++ .++++|...++.+.+|+ +..+.||||||..+..+++... +.. .+..++.||+.++.+.......+.+.++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~a-L~G---~qv~VvTPTreLA~Qdae~m~~l~~~lG 148 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNA-LTG---KGVHVVTVNDYLARRDAEWMGPVYRGLG 148 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHH-TTC---SCCEEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHH-HhC---CCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 355 77999999999999999 6799999999998887774322 111 2467788888888888888888888888
Q ss_pred ccccceeceeeeeccccccCccccccChHHH-HHHHhcc-------cccc---CCeeEEeeccCc
Q 004850 142 VTIGEEVGYSIRFEDCSSARTVLKYLTDGML-LREAMTD-------PLLE---RYKVIVLDEAHE 195 (727)
Q Consensus 142 ~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l-~r~~~~~-------~ll~---~~~~lIlDEahe 195 (727)
.+++..+|..............|.|.|+|++ .+.+..+ ..+. +..++|+||+|.
T Consensus 149 Lsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 8887777643322222223578999999999 4554433 1366 899999999883
No 88
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.42 E-value=2e-13 Score=146.37 Aligned_cols=150 Identities=20% Similarity=0.321 Sum_probs=111.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc------ccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD------RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~------~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+.+|++++|+|||||||||++..+. +++.++.... .++.+.++++.+......++.++++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~ 130 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 130 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHH
Confidence 5789999999999999999987433 2333222210 1346788899888777889999886432
Q ss_pred cc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.. .+...+|.. ...+..+..+|+|++||+.++++++.+|++|++|| +.+|......+++
T Consensus 131 ~~~~~~~~~~~~~v~~lL~~vgL~------~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~ 204 (366)
T 3tui_C 131 ELDNTPKDEVKRRVTELLSLVGLG------DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204 (366)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCG------GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 11 112223322 12356778899999999999999999999999999 7888888899999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHhh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQGY 234 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~~ 234 (727)
+++++.+.. +..+|++||.++. ..+++.
T Consensus 205 lL~~l~~~~-g~Tii~vTHdl~~~~~~aDr 233 (366)
T 3tui_C 205 LLKDINRRL-GLTILLITHEMDVVKRICDC 233 (366)
T ss_dssp HHHHHHHHS-CCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHhC-CCEEEEEecCHHHHHHhCCE
Confidence 999987664 7899999999964 455543
No 89
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.39 E-value=2.4e-13 Score=138.29 Aligned_cols=145 Identities=18% Similarity=0.252 Sum_probs=104.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|+.++|+|||||||||++..+. +++.++.... ..+.+.++++.|......++.+++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 5789999999999999999987432 2222221110 012477888888777778898888643
Q ss_pred cccc----------------ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 140 MDVT----------------IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 140 ~~~~----------------~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
.... ....+|.. . ...+..+..+|+|+++|+.++++++.+|+++|+|| +++|.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 182 (235)
T 3tif_A 108 LIFKYRGAMSGEERRKRALECLKMAELE----E-RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182 (235)
T ss_dssp HHTCSSSCCCHHHHHHHHHHHHHHTTCC----G-GGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHCCCC----h-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 2110 01111211 0 01255678899999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.++++++++.+.. +..+|++||.++.
T Consensus 183 ~i~~~l~~l~~~~-g~tvi~vtHd~~~ 208 (235)
T 3tif_A 183 KIMQLLKKLNEED-GKTVVVVTHDINV 208 (235)
T ss_dssp HHHHHHHHHHHHH-CCEEEEECSCHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEcCCHHH
Confidence 9999999986543 6899999999863
No 90
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.38 E-value=4.2e-13 Score=144.78 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=110.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|++++|+|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~ 105 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 105 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999988432 33332222 12235678888888777788999988543211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +.+|......++..++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~------~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQLA------HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCG------GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 112222321 22456788999999999999999999999999999 777778888899999988
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
.+.. +..+|++||.++ +..+++.
T Consensus 180 ~~~~-g~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 180 HKRL-GRTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp HHHH-CCEEEEECSCHHHHHHHCSE
T ss_pred HHhC-CCEEEEEECCHHHHHHhCCE
Confidence 7654 789999999985 4455543
No 91
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.37 E-value=6.1e-13 Score=142.58 Aligned_cols=150 Identities=23% Similarity=0.282 Sum_probs=109.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC----C-ccccCceEEEEcccchhhhccHHHHHHHhcc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE----T-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~----~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~ 141 (727)
+.+|++++|+|||||||||++..+. +++.++. . +...+.+.++++.+.....+++.++++....
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTST
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 5789999999999999999988432 3333221 0 1223567888888877778899999875332
Q ss_pred c-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 142 V-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 142 ~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
. .+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +.+|......+...
T Consensus 107 ~~~~~~~~~~~~v~~~l~~~gL~------~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~ 180 (359)
T 3fvq_A 107 NGKGRTAQERQRIEAMLELTGIS------ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180 (359)
T ss_dssp TSSCCSHHHHHHHHHHHHHHTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 111222211 22456788999999999999999999999999999 77777777778887
Q ss_pred HHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 207 LKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
++++.+.. +..+|++||.++ +..+++.
T Consensus 181 l~~~~~~~-g~tvi~vTHd~~ea~~~aDr 208 (359)
T 3fvq_A 181 MIAALRAN-GKSAVFVSHDREEALQYADR 208 (359)
T ss_dssp HHHHHHHT-TCEEEEECCCHHHHHHHCSE
T ss_pred HHHHHHhC-CCEEEEEeCCHHHHHHHCCE
Confidence 77776654 789999999985 3455543
No 92
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.36 E-value=4.7e-13 Score=133.37 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=92.5
Q ss_pred hcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCC--CccccCceEEEEcccchhh-hccHHHHHHH
Q 004850 62 RKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIE--TPDRRRKMMIACTQPRRVA-AMSVSRRVAE 138 (727)
Q Consensus 62 ~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~--~~~~~~~~~i~~t~p~~~~-~~~v~~~v~~ 138 (727)
....+++++|.++++.+.+++++++.+|||||||+++..++....... .....+.++++|+..+..+ .....+.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999998887665422100 0001223444444443333 2222222222
Q ss_pred hccccccceeceeeeecc--ccccCccccccChHHHHHHHhcc-------ccccCCeeEEeeccCcChhhHHHHHHHHHH
Q 004850 139 EMDVTIGEEVGYSIRFED--CSSARTVLKYLTDGMLLREAMTD-------PLLERYKVIVLDEAHERTLATDVLFGLLKE 209 (727)
Q Consensus 139 ~~~~~~~~~vg~~~~~~~--~~~~~~~i~~lT~G~l~r~~~~~-------~ll~~~~~lIlDEaher~~~~d~ll~ll~~ 209 (727)
. +..+....|....... .......|.++|++.+...+... ..+.++++||+||||. ....++...++..
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~-~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRH 186 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh-hccCCcHHHHHHH
Confidence 1 2222222222111000 00124678899999998887654 3478999999999995 4443344444444
Q ss_pred HHHhC--------------CCCEEEEEcCc
Q 004850 210 VLKNR--------------PDLKLVVMSAT 225 (727)
Q Consensus 210 l~~~~--------------~~~~vil~SAT 225 (727)
+...+ ++.++|++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 33222 57899999998
No 93
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.34 E-value=7.6e-13 Score=133.59 Aligned_cols=143 Identities=19% Similarity=0.268 Sum_probs=101.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc-------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD-------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~-------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+.+|++++|+|||||||||++..+. +++.++.... ..+.+.++++.+......++.+++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~ 106 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP 106 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhH
Confidence 5789999999999999999987432 2222221100 013466777777666667888877532
Q ss_pred ccc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
... .+...+|.. ...+..+..+|+|+++|+.++++++.+|+++|+|| +++|......++
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~ 180 (224)
T 2pcj_A 107 MLKMGKPKKEAKERGEYLLSELGLG------DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180 (224)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCT------TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCc------hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 110 011112211 12356677899999999999999999999999999 788888888899
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
++++++.+. +..+|+.||.++.
T Consensus 181 ~~l~~l~~~--g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 181 DIFLKINEG--GTSIVMVTHEREL 202 (224)
T ss_dssp HHHHHHHHT--TCEEEEECSCHHH
T ss_pred HHHHHHHHC--CCEEEEEcCCHHH
Confidence 999988654 7899999999753
No 94
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.33 E-value=1.5e-12 Score=139.69 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=108.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+.+|++++|+|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~ 117 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999988543 22222211 11234677888887777778999888643211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +++|......+...++++
T Consensus 118 ~~~~~~~~v~~~l~~~gL~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLE------SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111122211 12356778899999999999999999999999999 788888888899999988
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.. +..+|++||.++ +..+++
T Consensus 192 ~~~~-g~tvi~vTHd~~~a~~~ad 214 (355)
T 1z47_A 192 HDEM-GVTSVFVTHDQEEALEVAD 214 (355)
T ss_dssp HHHH-TCEEEEECSCHHHHHHHCS
T ss_pred HHhc-CCEEEEECCCHHHHHHhCC
Confidence 6653 689999999985 344554
No 95
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.33 E-value=1.1e-12 Score=136.25 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=104.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc-----cccCceEEEEcccc-hhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP-----DRRRKMMIACTQPR-RVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~-----~~~~~~~i~~t~p~-~~~~~~v~~~v~~~~ 140 (727)
+.+|++++|+|||||||||++..+. +++.++... ...+.+.++++.|. .+...++.+++....
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHH
Confidence 5789999999999999999987432 233222100 01235677888773 334578888875422
Q ss_pred cc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.. .+...+|.. ...+..+..+|+|+++|+.++++++.+|++||+|| +++|......+++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~ 184 (275)
T 3gfo_A 111 VNMKLPEDEIRKRVDNALKRTGIE------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184 (275)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCG------GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 10 111122211 12356778899999999999999999999999999 7888888889999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+.. +..+|+.||.++. ..+++
T Consensus 185 ~l~~l~~~~-g~tvi~vtHdl~~~~~~~d 212 (275)
T 3gfo_A 185 LLVEMQKEL-GITIIIATHDIDIVPLYCD 212 (275)
T ss_dssp HHHHHHHHH-CCEEEEEESCCSSGGGGCS
T ss_pred HHHHHHhhC-CCEEEEEecCHHHHHHhCC
Confidence 999987333 7899999999963 33443
No 96
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.32 E-value=1.1e-12 Score=135.79 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=104.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++|+|||||||||++..+. +++.++... ...+.+.++++.+......++.+++......
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 5789999999999999999987542 222222110 0112355666666655667888887543211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhcccccc------CCeeEEeec--cCcChhhHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE------RYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~------~~~~lIlDE--aher~~~~d~ll 204 (727)
.+...+|.. ...+..+..+|+|+++|+.++++++. +|++||+|| +++|......++
T Consensus 114 ~~~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCL------ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCS------TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCh------hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 111112211 12356677899999999999999998 999999999 788888888999
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++++++.+.. +..+|++||.++. ..+++
T Consensus 188 ~~l~~l~~~~-~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 188 RLLRQLTRQE-PLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp HHHHHHHHHS-SEEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHcC-CCEEEEEEcCHHHHHHhCC
Confidence 9999987653 5789999999863 44544
No 97
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.32 E-value=1.2e-12 Score=140.17 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=107.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+.+|+.++++|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999988543 22222211 11123567888887777778999988653211
Q ss_pred -------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++.+.
T Consensus 103 ~~~~~v~~~l~~~~L~------~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 103 KDPKRVLDTARDLKIE------HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp CCHHHHHHHHHHTTCT------TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 011112211 12356778899999999999999999999999999 788888888899999998765
Q ss_pred CCCCEEEEEcCccc-HHHHHh
Q 004850 214 RPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 214 ~~~~~vil~SATl~-~~~~~~ 233 (727)
. +..+|++||.++ +..+++
T Consensus 177 ~-g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 177 N-KLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TCEEEEEESCHHHHHHHCS
T ss_pred c-CCEEEEEeCCHHHHHHhCC
Confidence 4 789999999985 345554
No 98
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.32 E-value=1.5e-12 Score=135.19 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCC
Q 004850 260 RDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSK 339 (727)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~ 339 (727)
..++..+...+..+.. ...++|||+.....++.+...|.... ++.+..+||++++.+|.++++.|..+.
T Consensus 95 s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~- 163 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNP- 163 (271)
T ss_dssp CHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCC-
Confidence 4466655555554432 45689999999999999999997642 466888999999999999999998761
Q ss_pred CCCCCCcEEEEecCccccCcccCCeEEEEcCCCccceeeccccCccccccccccHhhHHhhhcccCCC-C--CceEEEec
Q 004850 340 EGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRT-Q--PGKCFRLY 416 (727)
Q Consensus 340 ~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~~~~~qR~GRaGR~-~--~G~~~~L~ 416 (727)
..+-+|+||+++++|||++++++||++++ |-+.+.+.||+||++|. + +-.+|+|+
T Consensus 164 ----~~~v~L~st~~~g~Glnl~~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li 221 (271)
T 1z5z_A 164 ----SVKFIVLSVKAGGFGINLTSANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLI 221 (271)
T ss_dssp ----TCCEEEEECCTTCCCCCCTTCSEEEECSC------------------CSCTTTC--------------CCEEEEEE
T ss_pred ----CCCEEEEehhhhcCCcCcccCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEe
Confidence 02348999999999999999999999999 88999999999999998 3 34579999
Q ss_pred chhhhc
Q 004850 417 TEKSFN 422 (727)
Q Consensus 417 t~~~~~ 422 (727)
++...+
T Consensus 222 ~~~TiE 227 (271)
T 1z5z_A 222 SVGTLE 227 (271)
T ss_dssp ETTSHH
T ss_pred eCCCHH
Confidence 876554
No 99
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.32 E-value=1.9e-12 Score=139.28 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=108.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+..|++++++|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999988532 23322221 11234677888887777778999888643211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHID------KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCT------TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 111122211 12356778899999999999999999999999999 788888888899999988
Q ss_pred HHhCCCCEEEEEcCccc-HHHHHh
Q 004850 211 LKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.+.. +..+|++||.++ +..+++
T Consensus 180 ~~~~-g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 180 QKEL-GITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp HHHH-TCEEEEEESCHHHHHHHCS
T ss_pred HHhC-CCEEEEECCCHHHHHHhCC
Confidence 6653 689999999985 344554
No 100
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.32 E-value=1.9e-12 Score=139.03 Aligned_cols=149 Identities=17% Similarity=0.255 Sum_probs=108.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+.+|+.++++|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI 105 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 5689999999999999999988533 23322221 11234677888888777788999998753311
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+...++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 106 SKDEVEKRVVEIARKLLID------NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp HHHHTTHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 011112211 12356778899999999999999999999999999 788888888899999988
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+.. +..+|++||.++. ..+++
T Consensus 180 ~~~~-g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 180 QQEL-GITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp HHHH-CCEEEEEESCHHHHHHHCS
T ss_pred HHhc-CCEEEEEcCCHHHHHHhCC
Confidence 6653 6899999999853 44554
No 101
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.31 E-value=1.9e-12 Score=129.42 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=100.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc----
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---- 142 (727)
+..|++++|+|||||||||++..+. +++.++. ...+.+.+++++|......++.+++......
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK 109 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Confidence 5789999999999999999988542 1111111 1123566778777666667888887542110
Q ss_pred -------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.+...+|.. .. +..+..+|+|+++|+.++++++.+++++|||| +++|......++.+++++.+.
T Consensus 110 ~~~~~~~~~l~~~gl~------~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 110 VNKNEIMDALESVEVL------DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp CCHHHHHHHHHHTTCC------CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCC------cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 011112211 11 45677899999999999999999999999999 788888888899999988654
Q ss_pred CCCCEEEEEcCccc
Q 004850 214 RPDLKLVVMSATLE 227 (727)
Q Consensus 214 ~~~~~vil~SATl~ 227 (727)
+..+|+.||.++
T Consensus 183 --g~tiiivtHd~~ 194 (214)
T 1sgw_A 183 --KGIVIISSREEL 194 (214)
T ss_dssp --HSEEEEEESSCC
T ss_pred --CCEEEEEeCCHH
Confidence 678999999985
No 102
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.30 E-value=2.8e-12 Score=132.16 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=103.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
+..|++++|+|||||||||++..+. +++.++.... ..+.+.++++.+......++.+++......
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 109 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC 109 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence 5789999999999999999988532 2222221100 012466777777666678898888653211
Q ss_pred -ccc------------------ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 143 -TIG------------------EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 143 -~~~------------------~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
..+ ..+......-+. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 110 PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred hccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 000 000000000011 12356677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 201 DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
..++++++++.+. +..+|+.||.++.
T Consensus 190 ~~l~~~l~~l~~~--g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 190 HDIFNHVLELKAK--GITFLIIEHRLDI 215 (257)
T ss_dssp HHHHHHHHHHHHT--TCEEEEECSCCST
T ss_pred HHHHHHHHHHHHC--CCEEEEEecCHHH
Confidence 9999999998653 7899999999863
No 103
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.30 E-value=1.8e-12 Score=139.35 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=108.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC------CccccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE------TPDRRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~------~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+.+|++++|+|||||||||++..+. +++.++. .+...+.+.++++.+.....+++.++++...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 107 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 5789999999999999999988533 2222211 1112346778888887777789999986533
Q ss_pred cc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 DV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
.. .+...+|.. ...+..+..+|+|++||+.++++++.+|++++||| +++|......+..
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~~L~------~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~ 181 (353)
T 1oxx_K 108 TNMKMSKEEIRKRVEEVAKILDIH------HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181 (353)
T ss_dssp TTSSCCHHHHHHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCc------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 11 011112211 12356678899999999999999999999999999 7888888888999
Q ss_pred HHHHHHHhCCCCEEEEEcCccc-HHHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~-~~~~~~ 233 (727)
.++++.+.. +..+|++||.++ +..+++
T Consensus 182 ~l~~l~~~~-g~tvi~vTHd~~~~~~~ad 209 (353)
T 1oxx_K 182 LVKEVQSRL-GVTLLVVSHDPADIFAIAD 209 (353)
T ss_dssp HHHHHHHHH-CCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999986654 689999999985 344544
No 104
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.29 E-value=2.2e-12 Score=147.21 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhcCCCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCC
Q 004850 264 EAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGP 343 (727)
Q Consensus 264 ~~~~~~l~~i~~~~~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~ 343 (727)
..+...+..+.. ..+|.+|||+|+....+.+++.+.. .. +..+|.. .++.++++.|+.+
T Consensus 370 ~~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~------ 428 (540)
T 2vl7_A 370 PIYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTG------ 428 (540)
T ss_dssp HHHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcC------
Confidence 445555555554 3578899999999999888776642 12 2345543 3566777777654
Q ss_pred CCcEEEE--ecCccccCcccCC----eEEEEcCCCccceeecccc--Ccc--------cc--ccccccHhhHHhhhcccC
Q 004850 344 PGRKIVV--STNIAETSLTIDG----IVYVIDPGFAKQKVYNPRV--RVE--------SL--LVSPISKASAHQRSGRAG 405 (727)
Q Consensus 344 ~~~kvlv--aTniAe~gitIp~----V~~VId~g~~k~~~~~~~~--~~~--------~l--~~~pis~~~~~qR~GRaG 405 (727)
. .|++ +|+.+..|||+|| +++||..|++-....||.. .+. .. ...|...-...|-+||.-
T Consensus 429 -~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~i 506 (540)
T 2vl7_A 429 -K-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAF 506 (540)
T ss_dssp -C-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -C-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcc
Confidence 2 4777 8999999999998 8999999996444333321 000 00 111233566789999999
Q ss_pred CC--CCceEEEe
Q 004850 406 RT--QPGKCFRL 415 (727)
Q Consensus 406 R~--~~G~~~~L 415 (727)
|. -.|..+.+
T Consensus 507 R~~~D~g~v~ll 518 (540)
T 2vl7_A 507 RDPNDYVKIYLC 518 (540)
T ss_dssp CSTTCCCEEEEE
T ss_pred cCCCccEEEEEE
Confidence 98 45766554
No 105
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.29 E-value=2.1e-12 Score=139.39 Aligned_cols=149 Identities=15% Similarity=0.231 Sum_probs=103.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+.+|++++|+|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++.....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 113 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 113 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999988532 23322221 11234677888888777778999998653211
Q ss_pred ----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 143 ----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 143 ----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
.+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +++|......+...++++
T Consensus 114 ~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIE------ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCG------GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 011112211 12356677899999999999999999999999999 788888888899999988
Q ss_pred HHhCCCCEEEEEcCcccH-HHHHh
Q 004850 211 LKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+.. +..+|++||.++. ..+++
T Consensus 188 ~~~~-g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 188 QQKL-KVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp HHHH-TCEEEEEESCHHHHHHHCS
T ss_pred HHhC-CCEEEEEeCCHHHHHHhCC
Confidence 6654 6899999999853 44544
No 106
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.29 E-value=2.4e-12 Score=132.92 Aligned_cols=148 Identities=17% Similarity=0.329 Sum_probs=103.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC--Cc---cccCceEEEEcccchhhhccHHHHHHHhc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--TP---DRRRKMMIACTQPRRVAAMSVSRRVAEEM- 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~- 140 (727)
+.+|++++|+|||||||||++..+. +++.++. .. ...+.+.++++.+......++.+++....
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~ 126 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM 126 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 5789999999999999999987432 2222221 00 01124667777776666678888775421
Q ss_pred ---cc----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHH
Q 004850 141 ---DV----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFG 205 (727)
Q Consensus 141 ---~~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ 205 (727)
+. .+...+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+++
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~ 200 (263)
T 2olj_A 127 KVRKWPREKAEAKAMELLDKVGLK------DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200 (263)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCG------GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCc------hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 10 011111211 12356677899999999999999999999999999 7888888888999
Q ss_pred HHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 206 LLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 206 ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++++.+. +..+|+.||.++. ..+++
T Consensus 201 ~l~~l~~~--g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 201 VMKQLANE--GMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp HHHHHHHT--TCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHhC--CCEEEEEcCCHHHHHHhCC
Confidence 99998654 7899999999853 44443
No 107
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.29 E-value=3.2e-12 Score=131.43 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=100.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHhc---c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEEM---D 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~---~ 141 (727)
+.+|++++|+|||||||||++..+. +++.++.. ....+.+.++++.+......++.+++.... +
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 117 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC
Confidence 5789999999999999999988532 22221111 011235677787776666678888774321 1
Q ss_pred c----------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 V----------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 ~----------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. .+...+|.. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......+++++++
T Consensus 118 ~~~~~~~~~~~~~l~~~gL~------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 118 SSSSEIEEMVERATEIAGLG------EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp CCHHHHHHHHHHHHHHHCCG------GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCc------hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 0 011112211 12345677899999999999999999999999999 78888888889999998
Q ss_pred HHHhCCCCEEEEEcCccc
Q 004850 210 VLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~ 227 (727)
+.+. +..+|+.||.++
T Consensus 192 l~~~--g~tiiivtHd~~ 207 (256)
T 1vpl_A 192 ASQE--GLTILVSSHNML 207 (256)
T ss_dssp HHHT--TCEEEEEECCHH
T ss_pred HHhC--CCEEEEEcCCHH
Confidence 8543 789999999875
No 108
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.29 E-value=2.3e-12 Score=139.38 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=107.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-------ccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-------PDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-------~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
+..|++++|+|||||||||++..+. +++.++.. +...+.+.++++.+.....+++.++++..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 105 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP 105 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 5689999999999999999988533 22222211 11234677888887777778999888643
Q ss_pred ccc-------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 140 MDV-------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 140 ~~~-------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
... .+...+|.. ...+..+..+|+|++||+.++++++.+|++|+||| +++|......+.
T Consensus 106 ~~~~~~~~~~~~~~v~~~l~~~~L~------~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 179 (372)
T 1g29_1 106 LKLRKVPRQEIDQRVREVAELLGLT------ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179 (372)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHTCG------GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 211 111122211 12356778899999999999999999999999999 788888888899
Q ss_pred HHHHHHHHhCCCCEEEEEcCccc-HHHHHhh
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLE-AEKFQGY 234 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~-~~~~~~~ 234 (727)
..++++.+.. +..+|++||.++ +..+++.
T Consensus 180 ~~l~~l~~~~-g~tvi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 180 AELKKLQRQL-GVTTIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp HHHHHHHHHH-TCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHHhc-CCEEEEECCCHHHHHHhCCE
Confidence 9998886654 689999999985 3445543
No 109
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.29 E-value=3.1e-12 Score=130.46 Aligned_cols=154 Identities=17% Similarity=0.269 Sum_probs=104.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
+..|++++|+|||||||||++..+. +++.++.... ..+.+.++++.+......++.+++......
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 108 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc
Confidence 5789999999999999999987532 2222221100 123467788777666677888888643200
Q ss_pred cc-c----ceeceee-eeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 TI-G----EEVGYSI-RFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 ~~-~----~~vg~~~-~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.. . ..+.... .+.+. ...+..+..+|+|+++|+.++++++.+|++++||| +++|......++++++++.+
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~- 187 (240)
T 1ji0_A 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ- 187 (240)
T ss_dssp CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-
Confidence 00 0 0000000 00001 12355677899999999999999999999999999 78888888889999998865
Q ss_pred CCCCEEEEEcCccc-HHHHHh
Q 004850 214 RPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 214 ~~~~~vil~SATl~-~~~~~~ 233 (727)
. +..+|+.||.++ ...+++
T Consensus 188 ~-g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 188 E-GTTILLVEQNALGALKVAH 207 (240)
T ss_dssp T-TCCEEEEESCHHHHHHHCS
T ss_pred C-CCEEEEEecCHHHHHHhCC
Confidence 2 788999999985 345554
No 110
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.28 E-value=2e-12 Score=133.58 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=103.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC------------c----cccCceEEEEcccchhhhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET------------P----DRRRKMMIACTQPRRVAAM 130 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~------------~----~~~~~~~i~~t~p~~~~~~ 130 (727)
+..|++++|+|||||||||++..+. +++.++.. . ...+.+.++++.+......
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 108 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 108 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCC
Confidence 5789999999999999999987432 22222210 0 0112466777777666667
Q ss_pred cHHHHHHHhc----cc----------cccceeceeeeeccccc-cCccccccChHHHHHHHhccccccCCeeEEeec--c
Q 004850 131 SVSRRVAEEM----DV----------TIGEEVGYSIRFEDCSS-ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--A 193 (727)
Q Consensus 131 ~v~~~v~~~~----~~----------~~~~~vg~~~~~~~~~~-~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--a 193 (727)
++.+++.... +. .+...+|.. .. .+..+..+|+|+++|+.++++++.+|+++|+|| +
T Consensus 109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 182 (262)
T 1b0u_A 109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGID------ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182 (262)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC------HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC------chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8888875421 10 011112211 12 355677899999999999999999999999999 7
Q ss_pred CcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 194 HERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 194 her~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
++|......++++++++.+. +..+|+.||.++. ..+++
T Consensus 183 ~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d 221 (262)
T 1b0u_A 183 ALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMGFARHVSS 221 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 88888888899999998654 7899999999853 34444
No 111
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.25 E-value=3e-12 Score=130.48 Aligned_cols=148 Identities=23% Similarity=0.321 Sum_probs=102.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC-ccccCceEEEEcccchhhhccHHHHHHHhccc---
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET-PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV--- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~-~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~--- 142 (727)
+.+ ++++|+|||||||||++..+. +++.++.. ....+.+.++++.+......++.+++......
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~ 100 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC
Confidence 467 899999999999999988543 22222211 01122455667776655667888877542210
Q ss_pred --------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHH
Q 004850 143 --------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLK 212 (727)
Q Consensus 143 --------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~ 212 (727)
.+...+|.. ...+..+..+|+|+++|+.++++++.+|+++++|| +++|......++++++++.+
T Consensus 101 ~~~~~~~~~~l~~~~l~------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 101 VERDRRVREMAEKLGIA------HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHHHTTTCT------TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCH------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 011112211 12355677899999999999999999999999999 88888888889999998865
Q ss_pred hCCCCEEEEEcCccc-HHHHHh
Q 004850 213 NRPDLKLVVMSATLE-AEKFQG 233 (727)
Q Consensus 213 ~~~~~~vil~SATl~-~~~~~~ 233 (727)
.. +..+|+.||.++ ...+++
T Consensus 175 ~~-g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 175 EF-DVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp HH-TCCEEEEESCHHHHHHHCS
T ss_pred hc-CCEEEEEeCCHHHHHHhCC
Confidence 43 678999999985 344544
No 112
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.23 E-value=2.1e-11 Score=125.30 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=103.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhcccccc--------
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG-------- 145 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~-------- 145 (727)
+..|++++|+|||||||||++..+. +. ..... ..+.+.++++.+......++.+++........+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~--Gl-~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLL--GI-HRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHT--TS-SCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CC-CCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 5789999999999999999988643 32 11100 123466777777655567888888653210000
Q ss_pred --ceeceeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEE
Q 004850 146 --EEVGYSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (727)
Q Consensus 146 --~~vg~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vi 220 (727)
..+......-+. ...+..+..+|+|+++|+.++++++.+|+++|||| +++|......++++++++.+.. +..+|
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi 183 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVV 183 (253)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEE
T ss_pred HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEE
Confidence 000000000011 11345677899999999999999999999999999 7888888888999999886543 67999
Q ss_pred EEcCcccH-HHHHh
Q 004850 221 VMSATLEA-EKFQG 233 (727)
Q Consensus 221 l~SATl~~-~~~~~ 233 (727)
+.||.++. ..+++
T Consensus 184 ~vtHd~~~~~~~~d 197 (253)
T 2nq2_C 184 FTTHQPNQVVAIAN 197 (253)
T ss_dssp EEESCHHHHHHHCS
T ss_pred EEecCHHHHHHhCC
Confidence 99999853 34443
No 113
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.22 E-value=7.5e-12 Score=129.60 Aligned_cols=148 Identities=20% Similarity=0.264 Sum_probs=99.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCccccCceEEEEccc-chhhhccHHHHHHHhcccccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPDRRRKMMIACTQP-RRVAAMSVSRRVAEEMDVTIG 145 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~~~~~~ 145 (727)
+..|+.++|+|||||||||++..+. +++.++......+.+.++++.| ......++.+++.........
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 109 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP 109 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence 5789999999999999999988532 1111111001123466777765 344557888887643211000
Q ss_pred -----ceeceeeeecccc---ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCC
Q 004850 146 -----EEVGYSIRFEDCS---SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRP 215 (727)
Q Consensus 146 -----~~vg~~~~~~~~~---~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~ 215 (727)
..+......-+.. ..+..+..+|+|+++|+.++++++.+++++|||| +++|......++++++++.+.
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-- 187 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-- 187 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--
Confidence 0010000000111 1345677899999999999999999999999999 788888888899999988654
Q ss_pred CCEEEEEcCccc
Q 004850 216 DLKLVVMSATLE 227 (727)
Q Consensus 216 ~~~vil~SATl~ 227 (727)
+..+|+.||.++
T Consensus 188 g~tii~vtHd~~ 199 (266)
T 2yz2_A 188 GKTVILISHDIE 199 (266)
T ss_dssp TCEEEEECSCCT
T ss_pred CCEEEEEeCCHH
Confidence 789999999985
No 114
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.20 E-value=8e-12 Score=130.13 Aligned_cols=142 Identities=23% Similarity=0.247 Sum_probs=97.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCC--C---ccccCceEEEEcccchhh--hccHHHHHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIE--T---PDRRRKMMIACTQPRRVA--AMSVSRRVAEE 139 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~--~---~~~~~~~~i~~t~p~~~~--~~~v~~~v~~~ 139 (727)
+..|++++|+|||||||||++..+. +++.++. . ....+.+.++++.+.... ..++.+++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 6789999999999999999987432 2222221 1 011234666666553222 24777777532
Q ss_pred ccc-----------------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhH
Q 004850 140 MDV-----------------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLAT 200 (727)
Q Consensus 140 ~~~-----------------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~ 200 (727)
... .+...+|.. ...+..+..+|+|+++|+.++++++.++++||||| +++|....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~ 197 (279)
T 2ihy_A 124 AFKSIGVYQDIDDEIRNEAHQLLKLVGMS------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197 (279)
T ss_dssp C---------CCHHHHHHHHHHHHHTTCG------GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred hhhccccccCCcHHHHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence 100 001111111 12356677899999999999999999999999999 78888888
Q ss_pred HHHHHHHHHHHHhCCCCEE--EEEcCccc
Q 004850 201 DVLFGLLKEVLKNRPDLKL--VVMSATLE 227 (727)
Q Consensus 201 d~ll~ll~~l~~~~~~~~v--il~SATl~ 227 (727)
..++++++++.+. +..+ |+.||.++
T Consensus 198 ~~l~~~l~~l~~~--g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 198 ESLLSILDSLSDS--YPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEEEESCGG
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEecCHH
Confidence 8899999998655 5678 99999985
No 115
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.19 E-value=1.1e-11 Score=126.86 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=102.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh----------cCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL----------EGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll----------~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
+..|+.++|+|||||||||++..+.= ++.++.. ....+.+.++++.+......++.+++......
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT 102 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCC
Confidence 57899999999999999999885421 1111100 00112356777777655667888887642110
Q ss_pred ------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCe-------eEEeec--cCcChhhHHHHHHHH
Q 004850 143 ------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK-------VIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~-------~lIlDE--aher~~~~d~ll~ll 207 (727)
.+...+|.. ...+..+..+|+|+++|+.++++++.+++ +++||| +++|......+++++
T Consensus 103 ~~~~~~~~l~~~~l~------~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 103 RTELLNDVAGALALD------DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176 (249)
T ss_dssp CHHHHHHHHHHTTCG------GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCh------hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence 011112211 12345677899999999999999999999 999999 788888888899999
Q ss_pred HHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 208 KEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
+++.+. +..+|+.||.++. ..+++
T Consensus 177 ~~l~~~--g~tviivtHd~~~~~~~~d 201 (249)
T 2qi9_C 177 SALSQQ--GLAIVMSSHDLNHTLRHAH 201 (249)
T ss_dssp HHHHHT--TCEEEEECSCHHHHHHHCS
T ss_pred HHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 988554 7899999999853 34443
No 116
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.16 E-value=2.8e-11 Score=123.91 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=98.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++|+|||||||||++..+. +++.++... ...+.+.++++.|.... .++.+++......
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGM 110 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCC
Confidence 5789999999999999999988532 222222110 01224667777775544 5888877432100
Q ss_pred ------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....+|.....+.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......+++++++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001111211000000 11233456899999999999999999999999999 78888888889999988
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ .. +..+|++||.++.
T Consensus 191 ~-~~--g~tviivtH~~~~ 206 (247)
T 2ff7_A 191 I-CK--GRTVIIIAHRLST 206 (247)
T ss_dssp H-HT--TSEEEEECSSGGG
T ss_pred H-cC--CCEEEEEeCCHHH
Confidence 7 32 7899999999863
No 117
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.16 E-value=1.6e-11 Score=127.42 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=97.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|++++|+|||||||||++..+. +++.++... ...+.+.++++.|.... .++.+++......
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~ 119 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR 119 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc
Confidence 36799999999999999999988532 222211110 01124667777775544 5888887542210
Q ss_pred ccc-c-------eeceeeeec----cc-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 143 TIG-E-------EVGYSIRFE----DC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 143 ~~~-~-------~vg~~~~~~----~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
... . ..+.....+ +. ...+..+..+|+|+++|+.++++++.++++||||| +++|......+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 199 (271)
T 2ixe_A 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199 (271)
T ss_dssp CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 000 0 001000000 00 11245567899999999999999999999999999 777777788888888
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+++.+.. +..+|++||.++.
T Consensus 200 ~~~~~~~-g~tviivtHd~~~ 219 (271)
T 2ixe_A 200 YESPEWA-SRTVLLITQQLSL 219 (271)
T ss_dssp HHCTTTT-TSEEEEECSCHHH
T ss_pred HHHHhhc-CCEEEEEeCCHHH
Confidence 7764332 6899999999753
No 118
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.14 E-value=1.5e-11 Score=126.15 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=90.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc-------------CccCCCcc----ccCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIETPD----RRRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~~~----~~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|++++|+|||||||||++..+.=- +.++.... ....+.++++.|......++.+++....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 105 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL 105 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHH
Confidence 578999999999999999998864321 11111000 0112345566665555567776664211
Q ss_pred ----cc------------cccceeceeeeeccccccCccccc-cChHHHHHHHhccccccCCeeEEeec--cCcChhhHH
Q 004850 141 ----DV------------TIGEEVGYSIRFEDCSSARTVLKY-LTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATD 201 (727)
Q Consensus 141 ----~~------------~~~~~vg~~~~~~~~~~~~~~i~~-lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d 201 (727)
+. .+...+|.. ....+..+.. +|+|+++|+.++++++.+|+++|||| +++|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 106 QAKLGREVGVAEFWTKVKKALELLDWD-----ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHTCC-----GGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HhhccccCCHHHHHHHHHHHHHHcCCC-----hhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 10 001111210 0112445566 99999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 202 VLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 202 ~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.++++++++.+ .+..+|+.||.++
T Consensus 181 ~l~~~l~~l~~--~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 181 VVARGVNAMRG--PNFGALVITHYQR 204 (250)
T ss_dssp HHHHHHHHHCS--TTCEEEEECSSSG
T ss_pred HHHHHHHHHHh--cCCEEEEEecCHH
Confidence 88888888743 2789999999985
No 119
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.12 E-value=3.4e-11 Score=126.76 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=96.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++|+|||||||||++..+. +++.++... ..++.+.++++.|..+ ..++.+++......
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~~ 155 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTA 155 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTTC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcccC
Confidence 5789999999999999999987432 233222221 1123567778777655 45888887532210
Q ss_pred ------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....++........ .........+|+|+++|+.++++++.++++||||| +++|......++..+++
T Consensus 156 ~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 156 GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 001111110000000 01123445799999999999999999999999999 67777777778888887
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+.+ +.++|++||.++.
T Consensus 236 l~~---~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 236 VCA---NRTTIVVAHRLST 251 (306)
T ss_dssp HHT---TSEEEEECCSHHH
T ss_pred HcC---CCEEEEEEcChHH
Confidence 642 5799999998864
No 120
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.10 E-value=4.2e-11 Score=124.01 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=93.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc-------------CccCCC--ccc--cCceEEEEcccchhhhccHHHHHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE-------------GVDIET--PDR--RRKMMIACTQPRRVAAMSVSRRVAEEM 140 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~-------------~~~~~~--~~~--~~~~~i~~t~p~~~~~~~v~~~v~~~~ 140 (727)
+..|++++|+|||||||||++..+.=- +.++.. ... ...+.++++.|......++.+.+....
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~ 122 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL 122 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence 578999999999999999998854321 111100 000 123556777776555556655553211
Q ss_pred -------cc-------------cccceeceeeeeccccccCcccc-ccChHHHHHHHhccccccCCeeEEeec--cCcCh
Q 004850 141 -------DV-------------TIGEEVGYSIRFEDCSSARTVLK-YLTDGMLLREAMTDPLLERYKVIVLDE--AHERT 197 (727)
Q Consensus 141 -------~~-------------~~~~~vg~~~~~~~~~~~~~~i~-~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~ 197 (727)
+. .+...+|.. ....+..+. .+|+|+++|+.++++++.+|++||||| +++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 123 NAVRSYRGQETLDRFDFQDLMEEKIALLKMP-----EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC-----TTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HhhhhhhccccCCHHHHHHHHHHHHHHcCCC-----hhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 00 001111211 011234454 499999999999999999999999999 78888
Q ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 198 LATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 198 ~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.....++++++++.+ .+..+|+.||.++
T Consensus 198 ~~~~~l~~~l~~l~~--~g~tviivtHd~~ 225 (267)
T 2zu0_C 198 DALKVVADGVNSLRD--GKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHHHHHHHHTTCC--SSCEEEEECSSGG
T ss_pred HHHHHHHHHHHHHHh--cCCEEEEEeeCHH
Confidence 888888888877632 2789999999985
No 121
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.09 E-value=2.8e-11 Score=123.69 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=96.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
+..|+.++|+|||||||||++..+. +++.++.. ....+.+.++++.|.... .++.+++.......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~ 103 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGD 103 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCC
Confidence 5789999999999999999987532 22222211 111234567777765444 47777764321000
Q ss_pred --------ccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 144 --------IGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 144 --------~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
....+|.....+.. ...+..+..+|+|+++|+.++++++.++++++||| +++|......++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 00111111000000 00123456899999999999999999999999999 7888888888999998
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++. . +..+|+.||.++.
T Consensus 184 ~~~-~--~~tvi~vtH~~~~ 200 (243)
T 1mv5_A 184 SLM-K--GRTTLVIAHRLST 200 (243)
T ss_dssp HHH-T--TSEEEEECCSHHH
T ss_pred Hhc-C--CCEEEEEeCChHH
Confidence 874 2 7899999998753
No 122
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.09 E-value=4.3e-11 Score=123.44 Aligned_cols=147 Identities=17% Similarity=0.190 Sum_probs=96.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-cc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD-VT 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-~~ 143 (727)
+..|+.++|+|||||||||++..+. +++.++.. ....+.+.++++.|.... .++.+++..... ..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~ 121 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDAT 121 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCC
Confidence 5789999999999999999987542 11211111 001234667777775543 588888753210 00
Q ss_pred ------ccceeceeeeecccc-----ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 144 ------IGEEVGYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 144 ------~~~~vg~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
....+|......... ..+..+..+|+|+++|+.++++++.+++++|||| +++|......++++++++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 001111110000000 0123456899999999999999999999999999 777888888888888887
Q ss_pred HHhCCCCEEEEEcCcccH
Q 004850 211 LKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 211 ~~~~~~~~vil~SATl~~ 228 (727)
. . +..+|++||.++.
T Consensus 202 ~--~-~~tviivtH~~~~ 216 (260)
T 2ghi_A 202 R--K-NRTLIIIAHRLST 216 (260)
T ss_dssp T--T-TSEEEEECSSGGG
T ss_pred c--C-CCEEEEEcCCHHH
Confidence 3 2 6799999999863
No 123
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.05 E-value=7.1e-10 Score=125.76 Aligned_cols=148 Identities=15% Similarity=0.163 Sum_probs=100.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCcc-CCCc---cccCceEEEEcccchhhhccHHHHHHHhccc----------c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVD-IETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV----------T 143 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~-~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----------~ 143 (727)
+..|++++|+|+|||||||++..+. +.. .... .....+..+++.+......++.+.+...... .
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILV--GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT--TSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--CCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 5689999999999999999988543 220 0000 0122344555544333345666666542110 0
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEE
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVV 221 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil 221 (727)
+...+|.. ...+..+..+|+|++||+.++++++.++++||||| +++|......++.+++++.+.. +..+|+
T Consensus 369 ~l~~~~l~------~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~ 441 (538)
T 3ozx_A 369 VTKRLNLH------RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFI 441 (538)
T ss_dssp TTTTTTGG------GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHcCCH------HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 11112211 12356778899999999999999999999999999 7888888888999999987654 789999
Q ss_pred EcCcccH-HHHHhh
Q 004850 222 MSATLEA-EKFQGY 234 (727)
Q Consensus 222 ~SATl~~-~~~~~~ 234 (727)
+||.++. ..+++.
T Consensus 442 vsHdl~~~~~~aDr 455 (538)
T 3ozx_A 442 IDHDLSIHDYIADR 455 (538)
T ss_dssp ECSCHHHHHHHCSE
T ss_pred EeCCHHHHHHhCCE
Confidence 9999863 444543
No 124
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.04 E-value=8.2e-11 Score=121.36 Aligned_cols=135 Identities=17% Similarity=0.172 Sum_probs=90.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccC-------CCc-----cccCceE-EEEcccchhhhccHHHHHHHhccc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDI-------ETP-----DRRRKMM-IACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~-------~~~-----~~~~~~~-i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
+. |+.++|+|||||||||++..+. +... ... ...+.+. ++++.+.. ..++.+++......
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~--Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~ 102 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAIS--GLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG 102 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHT--TSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHh--CCCCCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc
Confidence 56 9999999999999999988543 2110 000 0122455 55555543 67888877542210
Q ss_pred -------cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHh
Q 004850 143 -------TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 143 -------~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~ 213 (727)
.....+|.. ....+..+..+|+|+++|+.++++++.+|++++||| +++|......++++++++
T Consensus 103 ~~~~~~~~~l~~~gl~-----~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~--- 174 (263)
T 2pjz_A 103 LDRDLFLEMLKALKLG-----EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--- 174 (263)
T ss_dssp CCHHHHHHHHHHTTCC-----GGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHS---
T ss_pred hHHHHHHHHHHHcCCC-----hhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHh---
Confidence 111112211 011345677899999999999999999999999999 777777777777777664
Q ss_pred CCCCEEEEEcCccc
Q 004850 214 RPDLKLVVMSATLE 227 (727)
Q Consensus 214 ~~~~~vil~SATl~ 227 (727)
. . .+|+.||.++
T Consensus 175 ~-~-tviivtHd~~ 186 (263)
T 2pjz_A 175 G-K-EGILVTHELD 186 (263)
T ss_dssp C-S-EEEEEESCGG
T ss_pred c-C-cEEEEEcCHH
Confidence 2 3 8999999985
No 125
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.03 E-value=8.5e-11 Score=122.70 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=88.8
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccc--
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV-- 142 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~-- 142 (727)
..++++|.++++.+..+...++.++||||||.++..++..... .. ..+.++++ |++..+.+..+.+.+....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~--~~~~lil~---Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NY--EGKILIIV---PTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HC--SSEEEEEC---SSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cC--CCeEEEEE---CCHHHHHHHHHHHHHhccccc
Confidence 5789999999999888888889999999999988655543211 00 01233333 4444444455555443221
Q ss_pred -cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC-CCCEEE
Q 004850 143 -TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR-PDLKLV 220 (727)
Q Consensus 143 -~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~-~~~~vi 220 (727)
.+....|.... .........|.++|++.+.+. ....+.++++||+||||. ... .. +..++... +..+++
T Consensus 186 ~~~~~~~~~~~~-~~~~~~~~~I~v~T~~~l~~~--~~~~~~~~~~vIiDEaH~-~~~-~~----~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASK-DDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-KS----ISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSS-TTCCCTTCSEEEECHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-HH----HHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcc-hhhhccCCcEEEEchHHHHhh--HHHHHhhCCEEEEECCcc-CCc-cc----HHHHHHHhhcCCeEE
Confidence 11111121111 001114567889999876543 123578899999999995 332 22 23333322 478999
Q ss_pred EEcCccc
Q 004850 221 VMSATLE 227 (727)
Q Consensus 221 l~SATl~ 227 (727)
++|||..
T Consensus 257 ~lSATp~ 263 (282)
T 1rif_A 257 GLSGSLR 263 (282)
T ss_dssp EECSSCC
T ss_pred EEeCCCC
Confidence 9999984
No 126
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.03 E-value=8.1e-11 Score=127.84 Aligned_cols=142 Identities=22% Similarity=0.346 Sum_probs=92.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
.+..|+.++|+|||||||||++..+. +++.++... ...+.+.++++.+.... .++.+++.....
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~ 121 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHS 121 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccC
Confidence 36789999999999999999987543 223222211 11245677777775544 588887742110
Q ss_pred ----ccccceeceeeeeccccccCcccc-----------ccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH
Q 004850 142 ----VTIGEEVGYSIRFEDCSSARTVLK-----------YLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF 204 (727)
Q Consensus 142 ----~~~~~~vg~~~~~~~~~~~~~~i~-----------~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll 204 (727)
......+|... ..+..+. .+|+|++||+.++++++.+|++|+||| +++|......+.
T Consensus 122 ~~~v~~~l~~~~L~~------~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~ 195 (390)
T 3gd7_A 122 DQEIWKVADEVGLRS------VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195 (390)
T ss_dssp HHHHHHHHHHTTCHH------HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHH------HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 01112222210 0122222 299999999999999999999999999 666666666666
Q ss_pred HHHHHHHHhCCCCEEEEEcCcccH
Q 004850 205 GLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 205 ~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
..++++ ..+..+|++||.++.
T Consensus 196 ~~l~~~---~~~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 196 RTLKQA---FADCTVILCEARIEA 216 (390)
T ss_dssp HHHHTT---TTTSCEEEECSSSGG
T ss_pred HHHHHH---hCCCEEEEEEcCHHH
Confidence 666653 236789999999754
No 127
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.01 E-value=8e-10 Score=127.03 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=100.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCC--ccccCceEEEEcccchhhhccHHHHHHHh-c-c-------ccccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIET--PDRRRKMMIACTQPRRVAAMSVSRRVAEE-M-D-------VTIGE 146 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~--~~~~~~~~i~~t~p~~~~~~~v~~~v~~~-~-~-------~~~~~ 146 (727)
+..|++++|+|||||||||++..+.=... ... -.....+.++++.+......++.+.+... . . ..+..
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~ 457 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLK 457 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHH
Confidence 46899999999999999999886541110 000 00022456677665443445665544321 0 0 11112
Q ss_pred eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
.+|.. ...+..+..+|+|+++|+.++++++.+++++|||| +++|......++.+++++.+.. +..+|++||
T Consensus 458 ~~~l~------~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsH 530 (607)
T 3bk7_A 458 PLGII------DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEH 530 (607)
T ss_dssp HHTCT------TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred HcCCc------hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 22211 22356778899999999999999999999999999 8888888888999999986544 689999999
Q ss_pred cccH-HHHHh
Q 004850 225 TLEA-EKFQG 233 (727)
Q Consensus 225 Tl~~-~~~~~ 233 (727)
+++. ..+++
T Consensus 531 d~~~~~~~ad 540 (607)
T 3bk7_A 531 DVLMIDYVSD 540 (607)
T ss_dssp CHHHHHHHCS
T ss_pred CHHHHHHhCC
Confidence 9853 44443
No 128
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=117.05 Aligned_cols=147 Identities=9% Similarity=0.148 Sum_probs=92.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccc----cCceEEEEcccchhhhccHHHHHHHhcccc------ccce
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR----RRKMMIACTQPRRVAAMSVSRRVAEEMDVT------IGEE 147 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~----~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~------~~~~ 147 (727)
+..|+.++|+|||||||||++..+. +. +....+ ...+.++++.|. +...++.+++....... +...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl-~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~ 103 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALL--AE-MDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQA 103 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT--TC-SEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh--cC-CCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccCHHHHHHHHHH
Confidence 5789999999999999999988643 22 111000 012456666664 45678888875422100 0000
Q ss_pred eceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEE
Q 004850 148 VGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLV 220 (727)
Q Consensus 148 vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vi 220 (727)
++........ ...+..+..+|+|+++|+.++++++.+++++|||| +++|......++..+........+..+|
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvi 183 (237)
T 2cbz_A 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI 183 (237)
T ss_dssp TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEE
T ss_pred HhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 1100000000 01245567899999999999999999999999999 6666666666666663111112378999
Q ss_pred EEcCcccH
Q 004850 221 VMSATLEA 228 (727)
Q Consensus 221 l~SATl~~ 228 (727)
++||.++.
T Consensus 184 ivtH~~~~ 191 (237)
T 2cbz_A 184 LVTHSMSY 191 (237)
T ss_dssp EECSCSTT
T ss_pred EEecChHH
Confidence 99999864
No 129
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.98 E-value=1.4e-09 Score=123.47 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=99.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCc--cccCceEEEEcccchhhhccHHHHHHHh--cc-------ccccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETP--DRRRKMMIACTQPRRVAAMSVSRRVAEE--MD-------VTIGE 146 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~--~~-------~~~~~ 146 (727)
+..|++++|+|+|||||||++..+.=... .... .....+.++++.+......++.+.+... .. ..+..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~ 387 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLK 387 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHH
Confidence 46899999999999999999886541110 0000 0022455666655433445554444321 00 11122
Q ss_pred eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
.+|.. ...+..+..+|+|+++|+.++++++.++++||||| +++|......++++++++.+.. +..+|++||
T Consensus 388 ~~~l~------~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsH 460 (538)
T 1yqt_A 388 PLGII------DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEH 460 (538)
T ss_dssp TTTCG------GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECS
T ss_pred HcCCh------hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 22221 12356778899999999999999999999999999 7888888888999999886543 679999999
Q ss_pred cccH-HHHHh
Q 004850 225 TLEA-EKFQG 233 (727)
Q Consensus 225 Tl~~-~~~~~ 233 (727)
.++. ..+++
T Consensus 461 d~~~~~~~~d 470 (538)
T 1yqt_A 461 DVLMIDYVSD 470 (538)
T ss_dssp CHHHHHHHCS
T ss_pred CHHHHHHhCC
Confidence 9853 44443
No 130
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.94 E-value=2.2e-09 Score=123.17 Aligned_cols=146 Identities=13% Similarity=0.137 Sum_probs=96.3
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhcCcc-CCCc--cccCceEEEEcccchhhhccHHHHHHHhccc---------cccce
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLEGVD-IETP--DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV---------TIGEE 147 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~~~~-~~~~--~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~---------~~~~~ 147 (727)
.|++++|+|+|||||||++..+. +.. .... .....+.++++........++.+.+...... .+...
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~--Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 454 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLA--GALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHH--TSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHH
T ss_pred cceEEEEECCCCCcHHHHHHHHh--cCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHH
Confidence 45899999999999999987653 210 0000 0112344555544333334555554322110 01111
Q ss_pred eceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCc
Q 004850 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (727)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SAT 225 (727)
+|. ....+..+..+|+|++||+.++++++.++++||||| +++|......++.+++++.... +..+|++||.
T Consensus 455 l~l------~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHd 527 (608)
T 3j16_B 455 LRI------DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHD 527 (608)
T ss_dssp HTS------TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSC
T ss_pred cCC------hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 111 122356778899999999999999999999999999 7888888888999999886543 7899999999
Q ss_pred ccH-HHHHhh
Q 004850 226 LEA-EKFQGY 234 (727)
Q Consensus 226 l~~-~~~~~~ 234 (727)
++. ..+++.
T Consensus 528 l~~~~~~aDr 537 (608)
T 3j16_B 528 FIMATYLADK 537 (608)
T ss_dssp HHHHHHHCSE
T ss_pred HHHHHHhCCE
Confidence 863 444443
No 131
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.92 E-value=5.2e-10 Score=129.11 Aligned_cols=148 Identities=23% Similarity=0.293 Sum_probs=97.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+.+|+.++|+|||||||||++.... +++.++... ...+.+.+++++|.... .++.+++.-....
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP 445 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc
Confidence 5789999999999999999987532 233222211 11224667777776554 5888888542211
Q ss_pred ---------cccceeceeeeecccc-ccCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 143 ---------TIGEEVGYSIRFEDCS-SART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 143 ---------~~~~~vg~~~~~~~~~-~~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
.....+|.....+... ..++ ....+|+|+++|+.++++++.+++++|+|| +++|......+.+.
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 0011112110000100 0122 236799999999999999999999999999 67777777778888
Q ss_pred HHHHHHhCCCCEEEEEcCcccHH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~~ 229 (727)
++++.+ +..+|++||.++..
T Consensus 526 l~~~~~---~~tvi~itH~~~~~ 545 (595)
T 2yl4_A 526 LDRLMD---GRTVLVIAHRLSTI 545 (595)
T ss_dssp HHHHHT---TSEEEEECCCHHHH
T ss_pred HHHHhc---CCEEEEEecCHHHH
Confidence 887643 57999999998643
No 132
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.92 E-value=5.7e-10 Score=112.82 Aligned_cols=144 Identities=12% Similarity=0.204 Sum_probs=89.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccc----cCceEEEEcccchhhhccHHHHHHHhccc------cccce
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR----RRKMMIACTQPRRVAAMSVSRRVAEEMDV------TIGEE 147 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~----~~~~~i~~t~p~~~~~~~v~~~v~~~~~~------~~~~~ 147 (727)
+.+|+.++|+|||||||||++..+. +. +....+ ...+.++++.|.... .++.+++...... .....
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~--Gl-~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~ 106 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIM--GE-LEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKA 106 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT--TS-SCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CC-CcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHH
Confidence 5789999999999999999988643 22 111000 013456677665544 4888877542110 00011
Q ss_pred eceeeeecccc-----ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH-HHHHHHhCCCCEE
Q 004850 148 VGYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL-LKEVLKNRPDLKL 219 (727)
Q Consensus 148 vg~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l-l~~l~~~~~~~~v 219 (727)
.+.....+... ..+..+..+|+|+++|+.++++++.++++++||| +++|......+++. ++.+ ..+..+
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~~tv 183 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTR 183 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC---TTTSEE
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh---hCCCEE
Confidence 11110000000 1122356899999999999999999999999999 66666666656554 2332 126789
Q ss_pred EEEcCcccH
Q 004850 220 VVMSATLEA 228 (727)
Q Consensus 220 il~SATl~~ 228 (727)
|++||.++.
T Consensus 184 i~vtH~~~~ 192 (229)
T 2pze_A 184 ILVTSKMEH 192 (229)
T ss_dssp EEECCCHHH
T ss_pred EEEcCChHH
Confidence 999999754
No 133
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.92 E-value=4.5e-10 Score=129.30 Aligned_cols=148 Identities=21% Similarity=0.300 Sum_probs=96.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhc--
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEM-- 140 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~-- 140 (727)
.+..|+.++++|||||||||++.... +++.++.. ...++.+.++++.|.... .++.+++.-..
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~ 443 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAEG 443 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCCC
Confidence 36799999999999999999987532 22222211 111235667787776554 48888775321
Q ss_pred cc------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH
Q 004850 141 DV------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL 207 (727)
Q Consensus 141 ~~------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll 207 (727)
.. .....+|.....+.. ...+.....+|+|++||+.++++++.+++++|+|| +++|......+.+.+
T Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l 523 (582)
T 3b5x_A 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523 (582)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 10 001111211000000 01123345799999999999999999999999999 677777777788877
Q ss_pred HHHHHhCCCCEEEEEcCcccH
Q 004850 208 KEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 208 ~~l~~~~~~~~vil~SATl~~ 228 (727)
+++. .+..+|++||.++.
T Consensus 524 ~~~~---~~~tvi~itH~~~~ 541 (582)
T 3b5x_A 524 DELQ---KNKTVLVIAHRLST 541 (582)
T ss_pred HHHc---CCCEEEEEecCHHH
Confidence 7763 27899999999864
No 134
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.92 E-value=9.7e-10 Score=126.51 Aligned_cols=147 Identities=20% Similarity=0.244 Sum_probs=97.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhc--c
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEM--D 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~ 141 (727)
+.+|+.++++|||||||||++.... +++.++... ...+.+.++++.|.... .++.+++.-.. .
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 444 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEE 444 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCCC
Confidence 5789999999999999999987532 222222211 11224667787776554 58888886422 1
Q ss_pred c------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 142 V------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 142 ~------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
. .....+|.....+.. ...+.....+|+|++||+.++++++.+++++|+|| +++|......+.+.++
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0 001111211000000 01123445799999999999999999999999999 6777777777888888
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
++.+ +..+|+.||.++.
T Consensus 525 ~~~~---~~tvi~itH~~~~ 541 (582)
T 3b60_A 525 ELQK---NRTSLVIAHRLST 541 (582)
T ss_dssp HHHT---TSEEEEECSCGGG
T ss_pred HHhC---CCEEEEEeccHHH
Confidence 7642 6899999999863
No 135
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.91 E-value=4.8e-08 Score=111.69 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=98.9
Q ss_pred CEEEEEcCcccH-HHHHhhhcCC-Cee------eeCCCc-cceeeeeccC--C------cccHHHHHHHHHHHHhhcCCC
Q 004850 217 LKLVVMSATLEA-EKFQGYFYGA-PLM------KVPGRL-HPVEIFYTQE--P------ERDYLEAAIRTVVQIHMCEPS 279 (727)
Q Consensus 217 ~~vil~SATl~~-~~~~~~f~~~-p~i------~v~g~~-~~v~~~y~~~--~------~~~~~~~~~~~l~~i~~~~~~ 279 (727)
..+|++|||+.+ ..|.+.++-. +.. .++... ....+ |... + ..++...+...+..+... .+
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l-~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~ 393 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYEC-YIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AK 393 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEE-EEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEE-EEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CC
Confidence 689999999964 4455554432 221 111110 11111 2111 1 123445566666666543 56
Q ss_pred CCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEec--Ccccc
Q 004850 280 GDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVST--NIAET 357 (727)
Q Consensus 280 g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaT--niAe~ 357 (727)
|.+|||+|+....+.+++. .+..++.=..+++..+..+.|+ .. ..-|++|| .-..-
T Consensus 394 g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~---~~-------~~~vl~~v~gg~~~E 451 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS---AN-------NKVLIGSVGKGKLAE 451 (551)
T ss_dssp SEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT---SS-------SSCEEEEESSCCSCC
T ss_pred CCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH---hc-------CCeEEEEEecceecc
Confidence 7899999999988877752 1233333223456555555554 22 23699998 57778
Q ss_pred CcccC---C--eEEEEcCCCccceeecccc-----------Ccccc---ccccccHhhHHhhhcccCCCC--CceEEEe
Q 004850 358 SLTID---G--IVYVIDPGFAKQKVYNPRV-----------RVESL---LVSPISKASAHQRSGRAGRTQ--PGKCFRL 415 (727)
Q Consensus 358 gitIp---~--V~~VId~g~~k~~~~~~~~-----------~~~~l---~~~pis~~~~~qR~GRaGR~~--~G~~~~L 415 (727)
|||+| | .+.||=.|++--.. ||.. |.+.. ...| ..-...|=+||.=|.. .|..+-+
T Consensus 452 GiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred cccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 99999 3 78888778765444 4432 22111 2334 5556678899998873 3655544
No 136
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.89 E-value=6.6e-10 Score=127.88 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=94.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++++|||||||||++... .+++.++... ..++.+.+++++|.... .++.+++.-....
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~ 444 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGREDA 444 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCCCC
Confidence 578999999999999999998732 2333322211 11234667777776553 4888887422110
Q ss_pred ------cccceeceeeeecc----c-cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 ------TIGEEVGYSIRFED----C-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~----~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
......+.....+. . ...+.....+|+|++||+.++++++.+++++|+|| ++.|......+.+.+++
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 00001110000000 0 11133455799999999999999999999999999 66676666677777776
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ ..+.++|++||.++.
T Consensus 525 ~---~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 525 Y---TKGCTTFIITQKIPT 540 (587)
T ss_dssp H---STTCEEEEEESCHHH
T ss_pred h---CCCCEEEEEecChHH
Confidence 5 337899999999864
No 137
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.88 E-value=1.2e-09 Score=125.46 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=93.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+.+|+.++++|||||||||++... .+++.++.. ...++.+.+++++|.... .++.+++.-....
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~ 442 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTA 442 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc-ccHHHHHhcCCCCC
Confidence 578999999999999999998732 222322211 011224667777775554 4888887532110
Q ss_pred ------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 ------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....++.....+.. ...+.....+|+|++||+.++++++.+++++|+|| ++.|......+.+.+++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 522 (578)
T 4a82_A 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522 (578)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 000111110000000 01123345699999999999999999999999999 66776666667777766
Q ss_pred HHHhCCCCEEEEEcCcccH
Q 004850 210 VLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~ 228 (727)
+ ..+.++|++||.++.
T Consensus 523 ~---~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 523 L---SKDRTTLIVAHRLST 538 (578)
T ss_dssp H---TTTSEEEEECSSGGG
T ss_pred H---cCCCEEEEEecCHHH
Confidence 5 236799999999864
No 138
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.88 E-value=6.2e-10 Score=128.45 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=96.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhccc-
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMDV- 142 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~- 142 (727)
+..|+.++++|||||||||++.... +++.++... ..++.+.+++++|... ..++.+++.-....
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~ 456 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPGA 456 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTTC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCCC
Confidence 6789999999999999999987532 222222110 1122466777777554 45888888532110
Q ss_pred ------cccceeceeeeecccc-ccC----ccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 143 ------TIGEEVGYSIRFEDCS-SAR----TVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 143 ------~~~~~vg~~~~~~~~~-~~~----~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
.....++.....+... ..+ .....+|+|++||+.++++++.+++++|+|| ++.|......+.+.+++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0111111110000000 001 1224689999999999999999999999999 67777777778888877
Q ss_pred HHHhCCCCEEEEEcCcccHHH
Q 004850 210 VLKNRPDLKLVVMSATLEAEK 230 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~~~~ 230 (727)
+. .+.++|++||.++.-.
T Consensus 537 ~~---~~~t~i~itH~l~~~~ 554 (598)
T 3qf4_B 537 LM---EGKTSIIIAHRLNTIK 554 (598)
T ss_dssp HH---TTSEEEEESCCTTHHH
T ss_pred Hc---CCCEEEEEecCHHHHH
Confidence 63 2789999999997543
No 139
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.85 E-value=6.8e-09 Score=117.92 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=59.3
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+..+..+|+|+++|+.++++++.+|++||||| +|+|......++.+++++.+. +..+|++||.++
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~--g~tvi~vsHd~~ 219 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE--GKSVLVVEHDLA 219 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 356677899999999999999999999999999 898888889999999998763 789999999985
No 140
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.84 E-value=7.2e-09 Score=119.10 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=59.1
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+..+..+|+|+++|+.++++++.++++||||| +++|......++.+++++.+. +..+|++||.++
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~--g~tvIivsHdl~ 289 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE--GKAVLVVEHDLA 289 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEecChH
Confidence 355677899999999999999999999999999 888888888999999998753 789999999985
No 141
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.84 E-value=1.1e-08 Score=103.94 Aligned_cols=137 Identities=20% Similarity=0.156 Sum_probs=87.8
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc-
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT- 143 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~- 143 (727)
..++++|.++++.+.+++.++++|+||+|||.++..++.... .+.++++|+ +..+.+..+.+.+ ++..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~-------~~~liv~P~---~~L~~q~~~~~~~-~~~~~ 160 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS-------TPTLIVVPT---LALAEQWKERLGI-FGEEY 160 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSC-------SCEEEEESS---HHHHHHHHHHHGG-GCGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcC-------CCEEEEeCC---HHHHHHHHHHHHh-CCCCe
Confidence 467899999999999999999999999999999877665431 223334433 3333344444444 3332
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
++...| .......+.+.|++.+.+... .+..++++||+||+|.- .+. .+ +.+....+..+++++|
T Consensus 161 v~~~~g-------~~~~~~~i~v~T~~~l~~~~~--~~~~~~~llIiDEaH~l-~~~-~~----~~i~~~~~~~~~l~LS 225 (237)
T 2fz4_A 161 VGEFSG-------RIKELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHHL-PAE-SY----VQIAQMSIAPFRLGLT 225 (237)
T ss_dssp EEEESS-------SCBCCCSEEEEEHHHHHHTHH--HHTTTCSEEEEECSSCC-CTT-TH----HHHHHTCCCSEEEEEE
T ss_pred EEEEeC-------CCCCcCCEEEEeHHHHHhhHH--HhcccCCEEEEECCccC-CCh-HH----HHHHHhccCCEEEEEe
Confidence 222112 122356788899988765443 23456999999999952 222 22 2333444577899999
Q ss_pred Cccc
Q 004850 224 ATLE 227 (727)
Q Consensus 224 ATl~ 227 (727)
||..
T Consensus 226 ATp~ 229 (237)
T 2fz4_A 226 ATFE 229 (237)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 9985
No 142
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.81 E-value=1.8e-09 Score=112.96 Aligned_cols=143 Identities=12% Similarity=0.211 Sum_probs=88.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccc----cCceEEEEcccchhhhccHHHHHHHhcccc------ccce
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDR----RRKMMIACTQPRRVAAMSVSRRVAEEMDVT------IGEE 147 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~----~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~------~~~~ 147 (727)
+..|+.++|+|||||||||++..+. +. .....+ ...+.++++.+.... .++.+++. ..... ....
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~--Gl-~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~-~~~~~~~~~~~~~~~ 135 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIM--GE-LEPSEGKIKHSGRISFCSQNSWIMP-GTIKENII-GVSYDEYRYRSVIKA 135 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHT--TS-SCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHH-TTCCCHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh--cC-CCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhh-CcccchHHHHHHHHH
Confidence 5789999999999999999988643 32 111000 013456676665444 48888876 22100 0011
Q ss_pred eceeeeecccc-----ccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHH-HHHHHhCCCCEE
Q 004850 148 VGYSIRFEDCS-----SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLL-KEVLKNRPDLKL 219 (727)
Q Consensus 148 vg~~~~~~~~~-----~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll-~~l~~~~~~~~v 219 (727)
+|......... ..+..+..+|+|+++|+.++++++.+++++|||| +++|......++..+ +.+ ..+..+
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~---~~~~tv 212 (290)
T 2bbs_A 136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTR 212 (290)
T ss_dssp TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC---TTTSEE
T ss_pred hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh---hCCCEE
Confidence 11110000000 0122346799999999999999999999999999 666666666666542 222 126799
Q ss_pred EEEcCcccH
Q 004850 220 VVMSATLEA 228 (727)
Q Consensus 220 il~SATl~~ 228 (727)
|+.||.++.
T Consensus 213 iivtHd~~~ 221 (290)
T 2bbs_A 213 ILVTSKMEH 221 (290)
T ss_dssp EEECCCHHH
T ss_pred EEEecCHHH
Confidence 999999854
No 143
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.78 E-value=7e-09 Score=123.71 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=91.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCC-c-cccCceEEEEccc-chhhhccHHHHHHHhc-c-----ccccce
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIET-P-DRRRKMMIACTQP-RRVAAMSVSRRVAEEM-D-----VTIGEE 147 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~-~-~~~~~~~i~~t~p-~~~~~~~v~~~v~~~~-~-----~~~~~~ 147 (727)
.+..|+.++|+|+|||||||++..+. .+. +.. . ......+++++++ ......++.+.+.... + ......
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~La-gG~-i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~ 534 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIA-NGQ-VDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHH-HTC-STTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHh-CCC-cCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence 35789999999999999999998765 221 211 0 0111222222222 2234567777665310 0 011112
Q ss_pred eceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCc
Q 004850 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (727)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SAT 225 (727)
+|.. ....+..+..+|+|+++|+.++++++.++++||||| +|+|......+.++++. . +..+|++||.
T Consensus 535 lgL~-----~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHd 604 (986)
T 2iw3_A 535 FGFT-----DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHD 604 (986)
T ss_dssp TTCC-----HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSC
T ss_pred cCCC-----hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECC
Confidence 2211 011245677899999999999999999999999999 88888888888887776 2 7899999999
Q ss_pred cc
Q 004850 226 LE 227 (727)
Q Consensus 226 l~ 227 (727)
++
T Consensus 605 l~ 606 (986)
T 2iw3_A 605 SV 606 (986)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 144
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.75 E-value=1.2e-08 Score=115.55 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=57.3
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+..+..+|+|+++|+.++++++.+++++|||| ++++......++.+++++. . +..+|++||.++
T Consensus 132 ~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~--~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL--K-NKYVIVVDHDLI 198 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC--T-TSEEEEECSCHH
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEEeChH
Confidence 356677899999999999999999999999999 8888888888889888873 2 789999999985
No 145
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.67 E-value=4e-08 Score=114.99 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=59.2
Q ss_pred CccccccChHHHHHHHhccccccCCe--eEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYK--VIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~--~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+++|+.++++++.+++ +||||| +++|......++++++++... +..+|++||.++.
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDT 266 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHH
Confidence 45677899999999999999999988 999999 899999999999999998643 7899999999864
No 146
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.66 E-value=9.5e-09 Score=128.50 Aligned_cols=147 Identities=22% Similarity=0.343 Sum_probs=90.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH-----------HhcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF-----------VLEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~-----------ll~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.|..|+.++|+|+|||||||++... .+++.++.. ..-++.+.++++.|..+. -++.+++.-...
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLDP 1179 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSCT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCCC
Confidence 3678999999999999999988743 344444433 122346777887776443 477777632110
Q ss_pred --------ccccceeceeeeecccc-ccCccc----cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 142 --------VTIGEEVGYSIRFEDCS-SARTVL----KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 142 --------~~~~~~vg~~~~~~~~~-~~~~~i----~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
......++...-..... ..++.+ .-+|+|++||+.++++++.++++||||| +..|......+.+.
T Consensus 1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~ 1259 (1321)
T 4f4c_A 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259 (1321)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 00011111110000100 112222 3489999999999999999999999999 45444433334444
Q ss_pred HHHHHHhCCCCEEEEEcCccc
Q 004850 207 LKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~ 227 (727)
++ +...+.++|+++|-++
T Consensus 1260 l~---~~~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1260 LD---RAREGRTCIVIAHRLN 1277 (1321)
T ss_dssp HT---TTSSSSEEEEECSSSS
T ss_pred HH---HHcCCCEEEEeccCHH
Confidence 33 3345889999999875
No 147
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2.7e-08 Score=114.11 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=59.9
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH-HHHHh
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA-EKFQG 233 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~-~~~~~ 233 (727)
.+..+..+|+|+++|+.++++++.+++++|||| ++++......++.+++++... +..+|++||.++. ..+++
T Consensus 215 ~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP--TKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT--TCEEEEECSCHHHHHHHCS
T ss_pred hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCC
Confidence 356677899999999999999999999999999 788888888888888887543 6799999999853 34443
No 148
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.63 E-value=5.6e-09 Score=100.48 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=75.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhc-cHHHHHHHhccccccceeceeeeecc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAM-SVSRRVAEEMDVTIGEEVGYSIRFED 156 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~-~v~~~v~~~~~~~~~~~vg~~~~~~~ 156 (727)
+.+|+.++++|+|||||||++...+ .+......+..++ +++..+...... .+.+.+...... ....|+....+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~-~~~~~~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~- 79 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF-KPTEVISSDFCRG--LMSDDENDQTVTGAAFDVLHYIVSK--RLQLGKLTVVD- 79 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS-CGGGEEEHHHHHH--HHCSSTTCGGGHHHHHHHHHHHHHH--HHHTTCCEEEE-
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc-cCCeEEccHHHHH--HhcCcccchhhHHHHHHHHHHHHHH--HHhCCCeEEEE-
Confidence 5689999999999999999998633 2111110000000 111112111111 111111111000 01122222111
Q ss_pred ccccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChh----------------hHHHHHHHHHHHHHhCCCCE
Q 004850 157 CSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTL----------------ATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 157 ~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~----------------~~d~ll~ll~~l~~~~~~~~ 218 (727)
.....++|+.+++.+++++..+++++++|| +.++.. ....+..+++.+.+. +..
T Consensus 80 ------~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~t 151 (171)
T 4gp7_A 80 ------ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFR 151 (171)
T ss_dssp ------SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCS
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCc
Confidence 112347899999999999999999999999 333322 224456666665544 788
Q ss_pred EEEEcCcccH
Q 004850 219 LVVMSATLEA 228 (727)
Q Consensus 219 vil~SATl~~ 228 (727)
+|+.||.++.
T Consensus 152 vi~vtH~~~~ 161 (171)
T 4gp7_A 152 YVYILNSPEE 161 (171)
T ss_dssp EEEEECSHHH
T ss_pred EEEEeCCHHH
Confidence 9999999854
No 149
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.61 E-value=1.5e-08 Score=126.50 Aligned_cols=148 Identities=22% Similarity=0.267 Sum_probs=92.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCC---ccccCceEEEEcccchhhhccHHHHHHHhccc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIET---PDRRRKMMIACTQPRRVAAMSVSRRVAEEMDV 142 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~---~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~ 142 (727)
.+..|+.++|+|+|||||||++.... +++.++.. ...++.+.++++.|.... .++.+++.-....
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGRED 490 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCCC
Confidence 35789999999999999999987432 22221111 011224667777775443 4888887543210
Q ss_pred ----cc---cceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHH
Q 004850 143 ----TI---GEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLK 208 (727)
Q Consensus 143 ----~~---~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~ 208 (727)
.+ ...++........ .........+|+|++||+.++++++.+++++|||| +++|......+...++
T Consensus 491 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 00 0011100000000 11123345799999999999999999999999999 6666655555666665
Q ss_pred HHHHhCCCCEEEEEcCcccH
Q 004850 209 EVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 209 ~l~~~~~~~~vil~SATl~~ 228 (727)
.+. .+.++|++||.++.
T Consensus 571 ~~~---~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 571 KAR---EGRTTIVIAHRLST 587 (1284)
T ss_dssp HHH---TTSEEEEECSCHHH
T ss_pred HHc---CCCEEEEEecCHHH
Confidence 542 37899999998853
No 150
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.60 E-value=2.2e-08 Score=124.96 Aligned_cols=148 Identities=22% Similarity=0.299 Sum_probs=94.1
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhcc-
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD- 141 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~- 141 (727)
.+..|+.++|+|+|||||||++.... +++.++... ..++.+.++++.|... ..++.+++.-...
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~ 1133 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS 1133 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC
Confidence 36789999999999999999987432 333333221 1234577888877433 4577777742110
Q ss_pred --c------cccceeceeeeeccc-----cccCccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHH
Q 004850 142 --V------TIGEEVGYSIRFEDC-----SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGL 206 (727)
Q Consensus 142 --~------~~~~~vg~~~~~~~~-----~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~l 206 (727)
. .....++.....+.. .........+|+|++||+.++++++.++++||||| ++.|......+.+.
T Consensus 1134 ~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~ 1213 (1284)
T 3g5u_A 1134 RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213 (1284)
T ss_dssp CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 000011100000000 00112334699999999999999999999999999 66666666667766
Q ss_pred HHHHHHhCCCCEEEEEcCcccH
Q 004850 207 LKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 207 l~~l~~~~~~~~vil~SATl~~ 228 (727)
+++. ..+..+|++||.++.
T Consensus 1214 l~~~---~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1214 LDKA---REGRTCIVIAHRLST 1232 (1284)
T ss_dssp HHHH---SSSSCEEEECSCTTG
T ss_pred HHHh---CCCCEEEEEecCHHH
Confidence 6653 347899999999864
No 151
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.57 E-value=6.4e-08 Score=113.24 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=57.2
Q ss_pred CccccccChHHHHHHHhccccccCC---eeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERY---KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~---~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+++|+.++++++.++ ++||+|| +++|......++++++++... +..+|++||.++.
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~--g~tvi~vtHd~~~ 608 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTVLVIEHNLDV 608 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 4566789999999999999998765 6999999 788888889999999998654 7899999999864
No 152
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.53 E-value=4.1e-08 Score=122.82 Aligned_cols=146 Identities=18% Similarity=0.291 Sum_probs=90.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCc---cccCceEEEEcccchhhhccHHHHHHHhcc--
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETP---DRRRKMMIACTQPRRVAAMSVSRRVAEEMD-- 141 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~---~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~-- 141 (727)
+..|+.++|+|++||||||++...+ +++.++... .-+..+.+++++| -+..-++.+++.-...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf~~TI~eNI~~g~~~~ 519 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALFNCTIEENISLGKEGI 519 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC-CCCSEEHHHHHHTTCTTC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc-eeeCCchhHHHhhhcccc
Confidence 5789999999999999999987543 222222211 1112355555555 4556788888853211
Q ss_pred --c---cccceeceeeeeccccc-cCc----cccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHH
Q 004850 142 --V---TIGEEVGYSIRFEDCSS-ART----VLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKE 209 (727)
Q Consensus 142 --~---~~~~~vg~~~~~~~~~~-~~~----~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~ 209 (727)
. .....++...-.+.... .++ +=.-+|+|++||+.++++++.+++++|||| +..|......+...+..
T Consensus 520 ~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 520 TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 0 00011110000000000 112 223589999999999999999999999999 45555555556666666
Q ss_pred HHHhCCCCEEEEEcCccc
Q 004850 210 VLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 210 l~~~~~~~~vil~SATl~ 227 (727)
+. .++++|+++|-+.
T Consensus 600 ~~---~~~T~iiiaHrls 614 (1321)
T 4f4c_A 600 AA---KGRTTIIIAHRLS 614 (1321)
T ss_dssp HH---TTSEEEEECSCTT
T ss_pred Hh---CCCEEEEEcccHH
Confidence 54 3779999999875
No 153
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.46 E-value=6.4e-08 Score=96.10 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=77.5
Q ss_pred CCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhc---CccCCCc-------cccCceEEEEcccchhhhccHH
Q 004850 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLE---GVDIETP-------DRRRKMMIACTQPRRVAAMSVS 133 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~---~~~~~~~-------~~~~~~~i~~t~p~~~~~~~v~ 133 (727)
+.|-+.-+..++.-+..|+.++|+|||||||||++..+.-- ...+... ...+.+.++++.+.... ....
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl-~~~~ 83 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKI-DPYL 83 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTT
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHH-HHHH
Confidence 44555566778888999999999999999999998754321 1111100 00111222222220000 0000
Q ss_pred HHHHHhccccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHh
Q 004850 134 RRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 134 ~~v~~~~~~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~ 213 (727)
..+..... ... ........+.. .-|+++|+.++++++.++++|||||.--- ....+.++++++ .
T Consensus 84 ~~~~~~~~----~~~-------~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~--~~~~l~~~l~~l-~- 147 (208)
T 3b85_A 84 RPLHDALR----DMV-------EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT--TPAQMKMFLTRL-G- 147 (208)
T ss_dssp HHHHHHHT----TTS-------CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC--CHHHHHHHHTTB-C-
T ss_pred HHHHHHHH----Hhc-------cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc--cHHHHHHHHHHh-c-
Confidence 00000000 000 00000000000 11999999999999999999999994322 566677777765 2
Q ss_pred CCCCEEEEEcCccc
Q 004850 214 RPDLKLVVMSATLE 227 (727)
Q Consensus 214 ~~~~~vil~SATl~ 227 (727)
.+..+| +||.++
T Consensus 148 -~g~tii-vtHd~~ 159 (208)
T 3b85_A 148 -FGSKMV-VTGDIT 159 (208)
T ss_dssp -TTCEEE-EEEC--
T ss_pred -CCCEEE-EECCHH
Confidence 267788 999985
No 154
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.34 E-value=7.9e-07 Score=85.96 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=42.3
Q ss_pred CccccccChHHHHHHHhccc-----cccCCeeEEeeccCcCh-hhHHHHHHHHHHHHHhCCCCEEEEEcC
Q 004850 161 RTVLKYLTDGMLLREAMTDP-----LLERYKVIVLDEAHERT-LATDVLFGLLKEVLKNRPDLKLVVMSA 224 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~-----ll~~~~~lIlDEaher~-~~~d~ll~ll~~l~~~~~~~~vil~SA 224 (727)
+..+..+|+|+.+++.++++ ++.+++++||||++-.. ++.. ....+.+++.. .+..+|++||
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~-~~~~l~~~l~~-~~~~~i~~~H 138 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKK-FRDLVRQIMHD-PNVNVVATIP 138 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHH-HHHHHHHHHTC-TTSEEEEECC
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHH-HHHHHHHHHhc-CCCeEEEEEc
Confidence 44566799999999999996 89999999999954111 2222 33334444443 3566888886
No 155
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.29 E-value=1.1e-06 Score=104.59 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=56.2
Q ss_pred CccccccChHHHHHHHhccccccC---CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+.||+.++++++.+ ++++|||| .+++..+...++.+++++... +..+|++||.++.
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~--G~TVIvI~HdL~~ 870 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR--GNTVIVIEHNLDV 870 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence 345567999999999999999765 47999999 788888888899999998654 7899999999964
No 156
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.29 E-value=8.1e-07 Score=97.62 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=50.7
Q ss_pred cChHHHHHHHhccccccCC--eeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 167 LTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~--~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+|+|+++++.++..++.++ ++||||| +|++......+..+++++. .+.++|++||...
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~---~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---DTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT---TTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh---CCCEEEEEeCcHH
Confidence 6999999999999999999 9999999 7777777888888888874 2789999999963
No 157
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.16 E-value=5.8e-06 Score=82.51 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=71.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceee-eec
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI-RFE 155 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~-~~~ 155 (727)
-+..|+.+++.|+|||||||++..+...... . ...+.++....... .+..++. ..+........... ..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~----~-~~~v~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 89 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLR----D-GDPCIYVTTEESRD---SIIRQAK-QFNWDFEEYIEKKLIIID 89 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHH----H-TCCEEEEESSSCHH---HHHHHHH-HTTCCCGGGBTTTEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH----C-CCeEEEEEcccCHH---HHHHHHH-HhcchHHHHhhCCEEEEe
Confidence 4668999999999999999998876533221 0 11232333322211 1222221 12211110000000 000
Q ss_pred cccc---cCccccccChHHHHHHHhccccccCCe--eEEeeccC--c--ChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 156 DCSS---ARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAH--E--RTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 156 ~~~~---~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lIlDEah--e--r~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
.... ........+.+.+++.+.......+++ +||+||.. . +......++..++.+.+.. +..++++||..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~ 168 (235)
T 2w0m_A 90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYA 168 (235)
T ss_dssp CCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC--
T ss_pred ccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccC
Confidence 0000 000011236677766655444456899 99999954 2 3344566777788776654 78899999987
No 158
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.15 E-value=2.1e-06 Score=101.76 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=56.8
Q ss_pred CccccccChHHHHHHHhccccccC---CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+.+|+.++..++.+ ++++|||| ++++..+...++.+++++... +..+|++||.++.
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TVIvisHdl~~ 910 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--GDTVLVIEHNLDV 910 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 456678999999999999999865 59999999 788888888899999988654 7899999999864
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.13 E-value=1.4e-06 Score=104.04 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=47.9
Q ss_pred ccccccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+..+|+|+++|+.++++++.++++||||| .++|......+...+++ . +..+|++||.++
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~-g~tVIiISHD~e 959 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----F-EGGVIIITHSAE 959 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----C-SSEEEEECSCHH
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----h-CCEEEEEECCHH
Confidence 4566899999999999999999999999999 66665555445444433 3 468999999975
No 160
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.13 E-value=2.2e-06 Score=101.97 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=56.6
Q ss_pred CccccccChHHHHHHHhccccccC---CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+.+|+.++..++.+ ++++|||| ++++..+...++.+++++... +..+|++||.++.
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~TVIvisHdl~~ 928 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK--GNTVIVIEHNLDV 928 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 455678999999999999999865 59999999 788888888899999988654 7899999999864
No 161
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.13 E-value=4.1e-06 Score=84.77 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=24.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
-+..|++++|+|||||||||++..+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999987663
No 162
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.09 E-value=2.8e-06 Score=100.46 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=57.4
Q ss_pred CccccccChHHHHHHHhccccccC---CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLER---YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~---~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+.+|+.+++.++.+ ++++|||| .+++..+...++.+++++... +..+|++||.++.
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--G~tVIvisHdl~~ 795 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA--GNTVIAVEHKMQV 795 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence 456778999999999999999885 79999999 788888888899999988654 7899999999864
No 163
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.05 E-value=1e-05 Score=83.91 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=74.0
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHHh---cCccCCCcc--ccCceEEEEcccchhhhccHHHHHHHhccc----cccc
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFVL---EGVDIETPD--RRRKMMIACTQPRRVAAMSVSRRVAEEMDV----TIGE 146 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~ll---~~~~~~~~~--~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~----~~~~ 146 (727)
.-+..|++++|.|++||||||++.++.. .+..+.... ....+.++...........-+..+...... .+..
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~ 104 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVAD 104 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccC
Confidence 3578999999999999999999887653 121111000 011232333332221111111111111000 0011
Q ss_pred eeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeecc----CcChhh---HHHHHHHHHHHHHhCCCCEE
Q 004850 147 EVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA----HERTLA---TDVLFGLLKEVLKNRPDLKL 219 (727)
Q Consensus 147 ~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa----her~~~---~d~ll~ll~~l~~~~~~~~v 219 (727)
.++. .. ..+..+..+++|++.+.. .++.++++|||||. ..+... ...++..++.+.+.. +..+
T Consensus 105 ~l~l----~~--~~~~~~~~ls~g~~~~i~---~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~-g~tv 174 (279)
T 1nlf_A 105 GLLI----QP--LIGSLPNIMAPEWFDGLK---RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT-GCSI 174 (279)
T ss_dssp HEEE----CC--CTTSCCCTTSHHHHHHHH---HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH-CCEE
T ss_pred ceEE----ee--cCCCCcccCCHHHHHHHH---HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc-CCEE
Confidence 1111 11 123356678889866542 45668999999993 222221 255677777776544 7899
Q ss_pred EEEcCccc
Q 004850 220 VVMSATLE 227 (727)
Q Consensus 220 il~SATl~ 227 (727)
|++||+..
T Consensus 175 i~i~H~~~ 182 (279)
T 1nlf_A 175 VFLHHASK 182 (279)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999874
No 164
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.05 E-value=4.5e-06 Score=88.80 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceee
Q 004850 73 EFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSI 152 (727)
Q Consensus 73 ~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~ 152 (727)
.+--.+..|+.++|+|+|||||||++..+. +. +.. ..+. +..-.+.... .. .....+++..
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~--g~-~~~---~~g~-i~i~~~~e~~-~~-----------~~~~~i~~~~ 223 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIM--EF-IPK---EERI-ISIEDTEEIV-FK-----------HHKNYTQLFF 223 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGG--GG-SCT---TSCE-EEEESSCCCC-CS-----------SCSSEEEEEC
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHh--CC-CcC---CCcE-EEECCeeccc-cc-----------cchhEEEEEe
Confidence 334457899999999999999999887543 21 111 1132 2222211100 00 0111222210
Q ss_pred eeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHH
Q 004850 153 RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQ 232 (727)
Q Consensus 153 ~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~ 232 (727)
-+|+.++..+++++..+|+++|+||+- .. ...+.++.+... +..+++.+|..+....+
T Consensus 224 ---------------ggg~~~r~~la~aL~~~p~ilildE~~--~~---e~~~~l~~~~~g--~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 224 ---------------GGNITSADCLKSCLRMRPDRIILGELR--SS---EAYDFYNVLCSG--HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp ---------------BTTBCHHHHHHHHTTSCCSEEEECCCC--ST---HHHHHHHHHHTT--CCCEEEEEECSSHHHHH
T ss_pred ---------------CCChhHHHHHHHHhhhCCCEEEEcCCC--hH---HHHHHHHHHhcC--CCEEEEEEcccHHHHHh
Confidence 078899999999999999999999973 21 244556655322 34689999998865555
Q ss_pred hh
Q 004850 233 GY 234 (727)
Q Consensus 233 ~~ 234 (727)
+.
T Consensus 282 dr 283 (330)
T 2pt7_A 282 IR 283 (330)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 165
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.04 E-value=7.7e-07 Score=98.82 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=43.4
Q ss_pred ccccChHHHHHHHhccc--cccCCee----EEeec---cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 164 LKYLTDGMLLREAMTDP--LLERYKV----IVLDE---AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 164 i~~lT~G~l~r~~~~~~--ll~~~~~----lIlDE---aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...+|+|+++|+.++++ ++.++++ +|||| +++|.. .+ .+.++.+.. +..+++++|+.+
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~----~l~~l~~~~-~~tviiVth~~~ 299 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LA----ELHHIIEKL-NVNIMLVLCSET 299 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CH----HHHHHHHHT-TCCEEEEECCSS
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HH----HHHHHHHHh-CCCEEEEEccCc
Confidence 56799999999999999 9999999 99999 333333 33 344444333 567889999876
No 166
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.82 E-value=9.7e-06 Score=96.77 Aligned_cols=69 Identities=7% Similarity=0.086 Sum_probs=48.0
Q ss_pred cccChHHHHHHHhccccccCCeeEEeec--cCcChhhHHHHH-HHHHHHHHhCCCCEEEEEcCcccHHHHHhhh
Q 004850 165 KYLTDGMLLREAMTDPLLERYKVIVLDE--AHERTLATDVLF-GLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (727)
Q Consensus 165 ~~lT~G~l~r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll-~ll~~l~~~~~~~~vil~SATl~~~~~~~~f 235 (727)
...+.|+.....+.+. +.++++||||| ++.++.+...+. .+++.+.... +..+|+.||.++...+++.+
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV-KSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CCEEEEECSCGGGGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-CCeEEEEeCcHHHHHHHhhc
Confidence 3456677777666554 78999999999 555555555554 6666665433 78999999998766666544
No 167
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.80 E-value=6.5e-05 Score=79.54 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=52.3
Q ss_pred CccccccChHHHHHHHhccccc----cCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll----~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+++++.++.+++ ..++++|||| ++++......++.+++++ . .+.++|+.||..+.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~--~~~~vi~~tH~~~~ 284 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-S--KHTQFIVITHNKIV 284 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-T--TTSEEEEECCCTTG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c--CCCeEEEEECCHHH
Confidence 3456789999999999999874 6789999999 677777777788888776 2 26799999998643
No 168
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.79 E-value=4.2e-06 Score=91.35 Aligned_cols=70 Identities=4% Similarity=0.049 Sum_probs=49.7
Q ss_pred ccChH--HHHHHHhcccccc----------CCeeEEeec--cCcChhhHHHHHHHHHHHHH----hC--CCCEEEEEcC-
Q 004850 166 YLTDG--MLLREAMTDPLLE----------RYKVIVLDE--AHERTLATDVLFGLLKEVLK----NR--PDLKLVVMSA- 224 (727)
Q Consensus 166 ~lT~G--~l~r~~~~~~ll~----------~~~~lIlDE--aher~~~~d~ll~ll~~l~~----~~--~~~~vil~SA- 224 (727)
.++.| +.++..+++++.. +++++++|| ++.|......++..++++.. .. +..+++++|+
T Consensus 154 ~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh 233 (413)
T 1tq4_A 154 IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNK 233 (413)
T ss_dssp EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTT
T ss_pred EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 37888 8999888888777 999999999 67777888888888888752 22 2335565555
Q ss_pred ccc---HHHHHhhh
Q 004850 225 TLE---AEKFQGYF 235 (727)
Q Consensus 225 Tl~---~~~~~~~f 235 (727)
.++ .+.+++++
T Consensus 234 ~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 234 NVCHYDFPVLMDKL 247 (413)
T ss_dssp CTTSTTHHHHHHHH
T ss_pred cCCccCHHHHHHHH
Confidence 442 56665554
No 169
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.76 E-value=3.4e-05 Score=88.96 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH--hcCccCCCccccCceEEEEcccchhhhccHHHHHHH---hccc
Q 004850 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV--LEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE---EMDV 142 (727)
Q Consensus 68 ~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l--l~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~---~~~~ 142 (727)
.+.|.++++.+..+.++++.|++||||||.+..++ +... ... .+..++..-|...++..+.+.+.. .++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~--~~~---~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM--ADG---ERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHT--CSS---CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHh--hhc---CCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 56789999999999999999999999998765332 2211 000 112244445555555544443322 1111
Q ss_pred cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 143 TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 143 ~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
. ......+.. ...... .+...+++... .........++++||+|||+ +++.+.+..+++.+ .++.++|++
T Consensus 226 ~--~~~~~~~~~-~~~Tih-~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~~l---~~~~~liLv 295 (608)
T 1w36_D 226 T--DEQKKRIPE-DASTLH-RLLGAQPGSQR-LRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLIDAL---PDHARVIFL 295 (608)
T ss_dssp C--SCCCCSCSC-CCBTTT-SCC------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHHTC---CTTCEEEEE
T ss_pred C--HHHHhccch-hhhhhH-hhhccCCCchH-HHhccCCCCCCCEEEEechh--hCCHHHHHHHHHhC---CCCCEEEEE
Confidence 1 000000000 000001 11112222211 11111112378999999997 56655554444432 346788888
Q ss_pred cCc
Q 004850 223 SAT 225 (727)
Q Consensus 223 SAT 225 (727)
.-.
T Consensus 296 GD~ 298 (608)
T 1w36_D 296 GDR 298 (608)
T ss_dssp ECT
T ss_pred cch
Confidence 654
No 170
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.74 E-value=1.6e-05 Score=83.43 Aligned_cols=132 Identities=19% Similarity=0.250 Sum_probs=72.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc---------ccCceEEEEcccc-hhhhccHHHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD---------RRRKMMIACTQPR-RVAAMSVSRRV 136 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~---------~~~~~~i~~t~p~-~~~~~~v~~~v 136 (727)
+..|++++++|+|||||||++..+. +.+.+..... ...++.++++.+. .....++.+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 4578899999999999999887432 1111111110 0123556665554 44555566655
Q ss_pred HHhc--c--ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCe--eEEeeccCcChhhHHHHHHHHHHH
Q 004850 137 AEEM--D--VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAHERTLATDVLFGLLKEV 210 (727)
Q Consensus 137 ~~~~--~--~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lIlDEaher~~~~d~ll~ll~~l 210 (727)
.... + ..+.+.+|.. ...+..+..++ .++..+++++..+|+ ++|+| +- ..++.. ..++.+
T Consensus 177 ~~~~~~~~d~~lldt~gl~------~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt-sglD~~---~~~~~~ 242 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRL------HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN-TGLNML---PQAREF 242 (302)
T ss_dssp HHHHHTTCSEEEECCCCCS------SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG-GGGGGH---HHHHHH
T ss_pred HHHHHcCCcchHHhcCCCC------cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC-CCcCHH---HHHHHH
Confidence 4321 1 1111222211 11122333455 678888999999999 99999 64 122222 233454
Q ss_pred HHhCCCCEEEEEcC
Q 004850 211 LKNRPDLKLVVMSA 224 (727)
Q Consensus 211 ~~~~~~~~vil~SA 224 (727)
.+.. +..++++||
T Consensus 243 ~~~~-g~t~iiiTh 255 (302)
T 3b9q_A 243 NEVV-GITGLILTK 255 (302)
T ss_dssp HHHT-CCCEEEEEC
T ss_pred HHhc-CCCEEEEeC
Confidence 4333 678899998
No 171
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.74 E-value=0.0001 Score=76.87 Aligned_cols=59 Identities=24% Similarity=0.134 Sum_probs=39.9
Q ss_pred cChHHHHHHHhccccccCCeeEEeeccCc--------Ch-hhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 167 LTDGMLLREAMTDPLLERYKVIVLDEAHE--------RT-LATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 167 lT~G~l~r~~~~~~ll~~~~~lIlDEahe--------r~-~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
.+.+.++..+.+..+..++++|||||... +. .....+...++.+.+.. +..+|++||..
T Consensus 130 ~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~-~~~vi~vsh~~ 197 (296)
T 1cr0_A 130 AETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST-GVVLVVICHLK 197 (296)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHH-CCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEEEEEecC
Confidence 56777666555555678999999999442 11 22244667777776554 78999999985
No 172
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.68 E-value=5.6e-05 Score=85.65 Aligned_cols=133 Identities=12% Similarity=0.111 Sum_probs=80.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccc--eeceeeee
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGE--EVGYSIRF 154 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~--~vg~~~~~ 154 (727)
.+..|++++|.|++||||||++.++.-.... . ...+..+..++...+ +..+. ...+..... ..|.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~---G~~vi~~~~ee~~~~---l~~~~-~~~g~~~~~~~~~g~---- 343 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA--N---KERAILFAYEESRAQ---LLRNA-YSWGMDFEEMERQNL---- 343 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT--T---TCCEEEEESSSCHHH---HHHHH-HTTSCCHHHHHHTTS----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh--C---CCCEEEEEEeCCHHH---HHHHH-HHcCCCHHHHHhCCC----
Confidence 5788999999999999999999877643221 1 112233344443222 22221 111111100 0110
Q ss_pred ccccccCccccccChHHHHHHHhccccccCCeeEEeec-cCcChh-----hHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 155 EDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDE-AHERTL-----ATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 155 ~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDE-aher~~-----~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
....+..+..+|+|++++.+++..+..++++||+|= ...+.. ....+..+++.+.+. +..+|++||..
T Consensus 344 --~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~--g~tvilvsh~~ 417 (525)
T 1tf7_A 344 --LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE--EITGLFTNTSD 417 (525)
T ss_dssp --EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECS
T ss_pred --EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC--CCEEEEEECcc
Confidence 011233445689999999999999999999999993 122233 344566677666433 78999999986
No 173
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.66 E-value=1.9e-06 Score=89.02 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=34.7
Q ss_pred ccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 164 LKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 164 i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...+|+|+.+++.++++++ .+++|||.....-..| ..+++.+... ..+|++.+-.+
T Consensus 96 ~~~LS~G~~qrv~iaRal~---~lllldep~~gL~~lD--~~~l~~L~~~---~~vI~Vi~K~D 151 (270)
T 3sop_A 96 KEEVNIARKKRIPDTRVHC---CLYFISPTGHSLRPLD--LEFMKHLSKV---VNIIPVIAKAD 151 (270)
T ss_dssp HHHSCTTCCSSCCCCSCCE---EEEEECCCSSSCCHHH--HHHHHHHHTT---SEEEEEETTGG
T ss_pred HHhcCcccchhhhhheeee---eeEEEecCCCcCCHHH--HHHHHHHHhc---CcEEEEEeccc
Confidence 3468888888888887654 3999999632222222 4555655432 56776666553
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.66 E-value=9.1e-05 Score=79.40 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=33.8
Q ss_pred HhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHh
Q 004850 176 AMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (727)
Q Consensus 176 ~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~ 233 (727)
.+++++..+|++|++||.- . .. ....+.++... +..+++.+|+.+.....+
T Consensus 188 ~La~aL~~~PdvillDEp~--d--~e-~~~~~~~~~~~--G~~vl~t~H~~~~~~~~d 238 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR--D--LE-TIRLALTAAET--GHLVFGTLHTTSAAKTID 238 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC--S--HH-HHHHHHHHHHT--TCEEEEEESCSSHHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC--C--HH-HHHHHHHHHhc--CCEEEEEEccChHHHHHH
Confidence 6677788999999999973 2 11 22333333333 678999999997654443
No 175
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.64 E-value=2.3e-05 Score=84.01 Aligned_cols=131 Identities=20% Similarity=0.267 Sum_probs=71.4
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH-----------hcCccCCCcc---------ccCceEEEEcccc-hhhhccHHHHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV-----------LEGVDIETPD---------RRRKMMIACTQPR-RVAAMSVSRRVA 137 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l-----------l~~~~~~~~~---------~~~~~~i~~t~p~-~~~~~~v~~~v~ 137 (727)
..|++++++|+|||||||++..+. +.+.+..... ...++.++++.+. .....++.+.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 467899999999999999887432 1111111110 0123556665554 445555555554
Q ss_pred Hhc--c--ccccceeceeeeeccccccCccccccChHHHHHHHhccccccCCe--eEEeeccCcChhhHHHHHHHHHHHH
Q 004850 138 EEM--D--VTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAHERTLATDVLFGLLKEVL 211 (727)
Q Consensus 138 ~~~--~--~~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lIlDEaher~~~~d~ll~ll~~l~ 211 (727)
... + ..+.+.+|.. ...+..+..++ .++..+++++..+|+ ++|+| +- ..++. . ..++.+.
T Consensus 235 ~~~~~~~d~~lldt~Gl~------~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt-tglD~--~-~~~~~~~ 300 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRL------HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN-TGLNM--L-PQAREFN 300 (359)
T ss_dssp HHHHTTCSEEEEECCCCS------SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GG-GGGGG--H-HHHHHHH
T ss_pred HHHhCCCHHHHHHhcCCC------hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CC-CCCCH--H-HHHHHHH
Confidence 321 1 1111122211 11122233444 678888888999999 99999 63 12222 2 2234444
Q ss_pred HhCCCCEEEEEcC
Q 004850 212 KNRPDLKLVVMSA 224 (727)
Q Consensus 212 ~~~~~~~vil~SA 224 (727)
+.. +..+|++||
T Consensus 301 ~~~-g~t~iiiTh 312 (359)
T 2og2_A 301 EVV-GITGLILTK 312 (359)
T ss_dssp HHT-CCCEEEEES
T ss_pred Hhc-CCeEEEEec
Confidence 333 678899999
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.60 E-value=0.00011 Score=73.05 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
-+..|+.++|+|||||||||++..+.-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987754
No 177
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.60 E-value=7.4e-06 Score=80.92 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+.+|++++|+|||||||||++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCL 40 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999998854
No 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.60 E-value=0.00013 Score=87.51 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=42.8
Q ss_pred cChHHHHHHHhcccc--ccCCeeEEeec--cCcChhhHHHH-HHHHHHHHHhCCCCEEEEEcCcccHHHHHhh
Q 004850 167 LTDGMLLREAMTDPL--LERYKVIVLDE--AHERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEKFQGY 234 (727)
Q Consensus 167 lT~G~l~r~~~~~~l--l~~~~~lIlDE--aher~~~~d~l-l~ll~~l~~~~~~~~vil~SATl~~~~~~~~ 234 (727)
++.++..+..++..+ +.++++||||| .+.++.+...+ ..+++.+... .+..+|+.||..+...+++.
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~-~g~~vl~aTH~~el~~lad~ 793 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK-IGAFCMFATHFHELTALANQ 793 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT-TCCEEEEEESCGGGGGGGGT
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCCEEEEEcCcHHHHHHhcc
Confidence 455555444444444 78999999999 44555444444 5566666543 37899999999875555543
No 179
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=0.00013 Score=70.05 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|+.+++.||+||||||++..+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987543
No 180
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.57 E-value=9.2e-05 Score=75.90 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=35.8
Q ss_pred HHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHh
Q 004850 174 REAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQG 233 (727)
Q Consensus 174 r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~ 233 (727)
+..+++++..+|+++++||.- +.+.....++.. . .+..+++.+|+.+...+++
T Consensus 88 ~~~la~aL~~~p~illlDEp~----D~~~~~~~l~~~-~--~g~~vl~t~H~~~~~~~~d 140 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR----DLETVETALRAA-E--TGHLVFGTLHTNTAIDTIH 140 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC----SHHHHHHHHHHH-H--TTCEEEEEECCSSHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC----CHHHHHHHHHHH-c--cCCEEEEEeCcchHHHHHH
Confidence 677788888899999999973 222233344432 2 2678899999987654443
No 181
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.55 E-value=6.9e-06 Score=86.62 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=63.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhc--ccccc---ceeceee
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEM--DVTIG---EEVGYSI 152 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~--~~~~~---~~vg~~~ 152 (727)
+..|++++|+|++||||||++..+.---... .+...+.++++.+.-... ++.+++.... +..-. ..+...+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 6789999999999999999987532110001 011245566665543332 4444432100 00000 0000000
Q ss_pred -eeccccccCccccccChHHHHHHHhccccccCCeeEEeeccC
Q 004850 153 -RFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH 194 (727)
Q Consensus 153 -~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah 194 (727)
.+. ....+..+..+|.|+.+++.++.+++.++++||+||..
T Consensus 163 ~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~ 204 (312)
T 3aez_A 163 TSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLN 204 (312)
T ss_dssp HHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTT
T ss_pred HHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCcc
Confidence 000 01112445678999999988888899999999999965
No 182
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.51 E-value=0.00031 Score=65.44 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.|+.+++.|++||||||++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999987543
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.49 E-value=0.00025 Score=74.29 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=65.0
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccc
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~ 158 (727)
..+++++++|++||||||++......-. . . ...+.++-....+..+......+.+..+..+ ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~---~-g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~--------~~---- 164 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-D---E-GKSVVLAAADTFRAAAIEQLKIWGERVGATV--------IS---- 164 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-H---T-TCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--------EC----
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH-h---c-CCEEEEEccccccHHHHHHHHHHHHHcCCcE--------Ee----
Confidence 4567899999999999998875432111 0 0 1133344445554443322222232222111 00
Q ss_pred ccCccccccChHHHHH---HHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHh-------CCCCEEEEEcCcc
Q 004850 159 SARTVLKYLTDGMLLR---EAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKN-------RPDLKLVVMSATL 226 (727)
Q Consensus 159 ~~~~~i~~lT~G~l~r---~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~-------~~~~~vil~SATl 226 (727)
..++|...+ ..+..+...+++++|+||+. +....+.++..++.+... .|+..++++.|+.
T Consensus 165 -------~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 165 -------HSEGADPAAVAFDAVAHALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp -------CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred -------cCCccCHHHHHHHHHHHHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 011222222 24445567899999999987 444455555555554432 2455566777774
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.41 E-value=0.00022 Score=70.40 Aligned_cols=27 Identities=30% Similarity=0.196 Sum_probs=24.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
-+..|+.+++.|++||||||++.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999988776
No 185
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.40 E-value=0.00015 Score=82.13 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred HHHH-hhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccccc------
Q 004850 73 EFLQ-VLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG------ 145 (727)
Q Consensus 73 ~ii~-~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~------ 145 (727)
.+.- .+..|++++|+|+|||||||++.++++.+. .. + ..+.+.+...+....... .++..+....
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-~~-~--~~g~i~v~g~~~~~~~~~----~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-IE-F--DEPGVFVTFEETPQDIIK----NARSFGWDLAKLVDEG 101 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HH-H--CCCEEEEESSSCHHHHHH----HHGGGTCCHHHHHHTT
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-Hh-C--CCCEEEEEEeCCHHHHHH----HHHHcCCChHHhhccC
Confidence 3444 577899999999999999999998766554 11 0 113334434432111111 1111111000
Q ss_pred ceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccC-------cChhhHHHHHHHHHHHHHhCCCCE
Q 004850 146 EEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH-------ERTLATDVLFGLLKEVLKNRPDLK 218 (727)
Q Consensus 146 ~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah-------er~~~~d~ll~ll~~l~~~~~~~~ 218 (727)
....... ... ......+..+.-+.+.......-.-.+++.|+|||+- .+......++.+++.+.+. +..
T Consensus 102 ~l~~~~~-~~~-~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~--g~t 177 (525)
T 1tf7_A 102 KLFILDA-SPD-PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI--GAT 177 (525)
T ss_dssp SEEEEEC-CCC-SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH--TCE
T ss_pred cEEEEec-Ccc-cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC--CCE
Confidence 0000000 000 0000001111111122211111113578999999942 2334456688888887654 789
Q ss_pred EEEEcCccc
Q 004850 219 LVVMSATLE 227 (727)
Q Consensus 219 vil~SATl~ 227 (727)
+|++||.++
T Consensus 178 vl~itH~~~ 186 (525)
T 1tf7_A 178 TVMTTERIE 186 (525)
T ss_dssp EEEEEECSS
T ss_pred EEEEecCCC
Confidence 999999985
No 186
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.40 E-value=0.00021 Score=76.48 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=23.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+..|+++.|.|++||||||++.++....
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999877543
No 187
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.38 E-value=0.00015 Score=70.62 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=29.5
Q ss_pred ccChHHHHHH-Hhcc---ccccCCeeEEeeccCcChh-hHHHHHHHHHHHHHhC
Q 004850 166 YLTDGMLLRE-AMTD---PLLERYKVIVLDEAHERTL-ATDVLFGLLKEVLKNR 214 (727)
Q Consensus 166 ~lT~G~l~r~-~~~~---~ll~~~~~lIlDEaher~~-~~d~ll~ll~~l~~~~ 214 (727)
.++.|+.+.. ++.. +.+.+++++||||++ ++- ....++..+.+++...
T Consensus 83 ~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g-~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIG-KMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCS-TTTTTCSHHHHHHHHHHHCS
T ss_pred cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCC-ccccccHHHHHHHHHHHhCC
Confidence 3455554443 2233 468899999999975 332 2224677778877754
No 188
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.35 E-value=0.00014 Score=88.13 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccccc
Q 004850 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (727)
|++++|+|||||||||++.++-+... .. ..+ ..+|..+.. +++.+ .+...+|... ..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~-~a----qiG-~~Vpq~~~~---l~v~d--------~I~~rig~~d------~~ 845 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAV-MA----QMG-CYVPAEVCR---LTPID--------RVFTRLGASD------RI 845 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH-HH----TTT-CCEESSEEE---ECCCS--------BEEEECC-----------
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-Hh----hee-EEeccCcCC---CCHHH--------HHHHHcCCHH------HH
Confidence 79999999999999999886522111 00 001 134443321 11111 1111222211 00
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeecc--CcChhhH-HHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEA--HERTLAT-DVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEa--her~~~~-d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.......+ +.+.+..++..++.++++|||||. +.++.+. ..+..+++.+.... +..+|+.||..+.
T Consensus 846 ~~~~stf~-~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el 914 (1022)
T 2o8b_B 846 MSGESTFF-VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSL 914 (1022)
T ss_dssp ----CHHH-HHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHH
T ss_pred hhchhhhH-HHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH
Confidence 11111222 234445666667889999999994 4444442 34677787776543 6789999999854
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.34 E-value=0.00013 Score=76.46 Aligned_cols=132 Identities=18% Similarity=0.135 Sum_probs=66.0
Q ss_pred cCCEEEEEcCCCChhhchhhHHHh-----------cCccCCCcc---------ccCceEEEEcccchhhhccHHHHHHHh
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVL-----------EGVDIETPD---------RRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll-----------~~~~~~~~~---------~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.|++++++|+|||||||++..+.- .+.+..... ....+.++++.+...+...+.+.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999998874321 111111100 011233444444333334444444321
Q ss_pred c--cc--cccceeceeeeeccccccCccccccChHHHHHHHhccccccCCe--eEEeeccCcChhhHHHHHHHHHHHHHh
Q 004850 140 M--DV--TIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK--VIVLDEAHERTLATDVLFGLLKEVLKN 213 (727)
Q Consensus 140 ~--~~--~~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~--~lIlDEaher~~~~d~ll~ll~~l~~~ 213 (727)
. +. .+.+..|. .......+.....++..+++++..+|+ +++||... . ...+..++.+.+.
T Consensus 181 ~~~~~d~~llDt~G~---------~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t-~----~~~~~~~~~~~~~ 246 (304)
T 1rj9_A 181 KARGYDLLFVDTAGR---------LHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT-G----QNGLEQAKKFHEA 246 (304)
T ss_dssp HHHTCSEEEECCCCC---------CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB-C----THHHHHHHHHHHH
T ss_pred HhCCCCEEEecCCCC---------CCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH-H----HHHHHHHHHHHHH
Confidence 1 10 01111111 111222334444667778888888887 66777532 1 1234445555433
Q ss_pred CCCCEEEEEcCcc
Q 004850 214 RPDLKLVVMSATL 226 (727)
Q Consensus 214 ~~~~~vil~SATl 226 (727)
. +..+|++||..
T Consensus 247 ~-~~t~iivTh~d 258 (304)
T 1rj9_A 247 V-GLTGVIVTKLD 258 (304)
T ss_dssp H-CCSEEEEECTT
T ss_pred c-CCcEEEEECCc
Confidence 2 56788888864
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.31 E-value=0.00084 Score=73.52 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=65.4
Q ss_pred CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccccc
Q 004850 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (727)
+.+++++|++||||||++......-... ...+.++...+.+..+......++...+..+.. ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-----G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~----------~~~- 160 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-----GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG----------EPN- 160 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC----------CTT-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEecCccchhHHHHHHHHHHhcCCceee----------ccc-
Confidence 5688999999999999877543211100 113445555665555544444444433321100 000
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeeccCcCh--hhHHHHHHHHHHHH-HhCCCCEEEEEcCcc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERT--LATDVLFGLLKEVL-KNRPDLKLVVMSATL 226 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~--~~~d~ll~ll~~l~-~~~~~~~vil~SATl 226 (727)
...+-.+....+......+++++|+|++.... .+..++ ..+..+. ...|+..+++++|+.
T Consensus 161 -----~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm-~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 161 -----NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLL-EEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp -----CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHH-HHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHH-HHHHHHHHhhCCcceEEEEeCcc
Confidence 01222233333444445689999999987433 333333 3333332 235677777888875
No 191
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.21 E-value=0.00095 Score=69.61 Aligned_cols=130 Identities=22% Similarity=0.314 Sum_probs=66.6
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS 159 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~ 159 (727)
.+++++++|++||||||++......-. ... ...+.++...+.+..+.......+...+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~---G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~--------~------ 165 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM-LEK---HKKIAFITTDTYRIAAVEQLKTYAELLQAPL--------E------ 165 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH-HTT---CCCEEEEECCCSSTTHHHHHHHHHTTTTCCC--------C------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-Hhc---CCEEEEEecCcccchHHHHHHHHHHhcCCCe--------E------
Confidence 578999999999999998875432111 000 1234556666655444332222222222110 0
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcccH---HHHHhhh
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATLEA---EKFQGYF 235 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~-~~~~~~vil~SATl~~---~~~~~~f 235 (727)
...+++. ++..++. +.+++++|+|.+..+..+...+..+. .+.. ..++-.++++.+|... ..+++.|
T Consensus 166 -----~~~~~~~-l~~al~~--~~~~dlvIiDT~G~~~~~~~~~~el~-~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 166 -----VCYTKEE-FQQAKEL--FSEYDHVFVDTAGRNFKDPQYIDELK-ETIPFESSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp -----BCSSHHH-HHHHHHH--GGGSSEEEEECCCCCTTSHHHHHHHH-HHSCCCTTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred -----ecCCHHH-HHHHHHH--hcCCCEEEEeCCCCChhhHHHHHHHH-HHHhhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence 0012222 2333432 48899999999876544444333333 3322 1234457777666543 3444555
Q ss_pred c
Q 004850 236 Y 236 (727)
Q Consensus 236 ~ 236 (727)
.
T Consensus 237 ~ 237 (296)
T 2px0_A 237 S 237 (296)
T ss_dssp S
T ss_pred h
Confidence 3
No 192
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.14 E-value=0.00095 Score=78.85 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=38.4
Q ss_pred cccCCeeEEeecc--CcChhhHHHH-HHHHHHHHHhCCCCEEEEEcCcccHHHHHhhh
Q 004850 181 LLERYKVIVLDEA--HERTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAEKFQGYF 235 (727)
Q Consensus 181 ll~~~~~lIlDEa--her~~~~d~l-l~ll~~l~~~~~~~~vil~SATl~~~~~~~~f 235 (727)
.+.++++|||||. +.++.+...+ ..+++.+.+.. +..+|+.||..+...+++..
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGGGGGHHHHS
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHHHHHHhhhh
Confidence 3789999999994 4455555543 66777765532 78999999998765566554
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.09 E-value=0.0014 Score=65.30 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=60.7
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccc
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCS 158 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~ 158 (727)
..|..+++.|++||||||++.+.+..... .. .+.+.+-+....+ ... .+....|... .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g---~kVli~~~~~d~r-~~~------------~i~srlG~~~--~--- 67 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-AD---VKYLVFKPKIDTR-SIR------------NIQSRTGTSL--P--- 67 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TT---CCEEEEEECCCGG-GCS------------SCCCCCCCSS--C---
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cC---CEEEEEEeccCch-HHH------------HHHHhcCCCc--c---
Confidence 46788999999999999998876654321 11 1122121121111 111 1112222110 0
Q ss_pred ccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 159 SARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 159 ~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
.+...+...+...+.....-.++++||+||++- +..+ .++.+..+... +..+|++....
T Consensus 68 ----~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl~~ 126 (223)
T 2b8t_A 68 ----SVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGLDK 126 (223)
T ss_dssp ----CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECCSB
T ss_pred ----ccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEeccc
Confidence 011223334444333322234689999999973 3333 55566665553 78899988854
No 194
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.07 E-value=0.00062 Score=77.71 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=32.2
Q ss_pred CchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 66 p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..++.|.+++..+..+.+++|.|++||||||++..++
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~ 225 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA 225 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH
Confidence 4578899999999999999999999999999877543
No 195
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.06 E-value=0.0011 Score=71.94 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.0
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHhcCc
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVLEGV 106 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~~~ 106 (727)
..|+++.|.|++||||||++.++.+...
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 4688999999999999999998776554
No 196
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.06 E-value=0.0013 Score=65.79 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.6
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
-+..|++++|.|++||||||++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4668999999999999999999987764
No 197
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.06 E-value=0.0008 Score=79.05 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=39.2
Q ss_pred cChHHHHHHHhcccc--ccCCeeEEeeccCc--ChhhHHHH-HHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 167 LTDGMLLREAMTDPL--LERYKVIVLDEAHE--RTLATDVL-FGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 167 lT~G~l~r~~~~~~l--l~~~~~lIlDEahe--r~~~~d~l-l~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
.+.++..+..++..+ +.+++++||||... ..++.... ..++..+.. .+..+|+.||..+..
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELT 701 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHH
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHH
Confidence 466776666666666 88999999999742 22333222 234444433 278999999987543
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.04 E-value=0.003 Score=69.16 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccccc
Q 004850 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (727)
..+++++|++|+||||.+......-. . . ...+.++...+.+..+......++...+..+.. ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~---~-~-G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~----------~~~- 163 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ---K-R-GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG----------NPQ- 163 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---T-T-TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC----------CTT-
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH---H-C-CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe----------cCC-
Confidence 46889999999999998775432111 0 0 124456677777776655555555444322110 000
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~-~~~~~~vil~SATl 226 (727)
...+....+..+....-.+++++|+|.+.....+.. ++..++.+.. ..|+..++++.|+.
T Consensus 164 -----~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~-lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 164 -----EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKA-LIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHH-HHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHH-HHHHHHHHHHhhcCceEEEEEeCCC
Confidence 012223333333333345699999999874333333 4443444332 34677788888876
No 199
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.00 E-value=0.0024 Score=68.85 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=61.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDC 157 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~ 157 (727)
+..|+.++|+|||||||||++..++-.-. .. ..+.++..-.|... .....+++.....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~----~~g~I~~~e~~~e~---------------~~~~~~~~v~Q~~-- 190 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-QT----KSYHIITIEDPIEY---------------VFKHKKSIVNQRE-- 190 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HH----SCCEEEEEESSCCS---------------CCCCSSSEEEEEE--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cC----CCcEEEEecccHhh---------------hhccCceEEEeee--
Confidence 67899999999999999999875432110 00 01222333333211 0011122221100
Q ss_pred cccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHHHHHhh
Q 004850 158 SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGY 234 (727)
Q Consensus 158 ~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~~~~~~ 234 (727)
...+ ... ++..++..+..++++|++||.- +...+...++.. ..+..++..+|+.++..+.+.
T Consensus 191 ~g~~--~~~------~~~~l~~~L~~~pd~illdE~~----d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~~~r 252 (372)
T 2ewv_A 191 VGED--TKS------FADALRAALREDPDVIFVGEMR----DLETVETALRAA---ETGHLVFGTLHTNTAIDTIHR 252 (372)
T ss_dssp BTTT--BSC------SHHHHHHHTTSCCSEEEESCCC----SHHHHHHHHHHH---TTTCEEEECCCCCSHHHHHHH
T ss_pred cCCC--HHH------HHHHHHHHhhhCcCEEEECCCC----CHHHHHHHHHHH---hcCCEEEEEECcchHHHHHHH
Confidence 0000 111 1345556666789999999973 122233334432 225678888888776554433
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.99 E-value=0.0017 Score=64.95 Aligned_cols=28 Identities=36% Similarity=0.654 Sum_probs=24.1
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+..|+.++|.|++||||||+..+++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988776543
No 201
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.85 E-value=0.0023 Score=61.75 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.|.+.++.|+.||||||++.+.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999998766543
No 202
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.84 E-value=0.0036 Score=65.14 Aligned_cols=126 Identities=23% Similarity=0.239 Sum_probs=61.1
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSS 159 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~ 159 (727)
.+++++++|++|+||||+.......-. .. ...+.++-..+.+..+......+....+..+ +. . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~~----~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~-----~--~- 160 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK----GRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE-----V--M- 160 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HT----TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE-----C--C-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc----CCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE-----c--C-
Confidence 577999999999999998764332111 00 1133344444444333221222222222111 00 0 0
Q ss_pred cCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
. ...+..+++..++.....+++++|+||+.-...+...+..+.+......|+..++++.++.
T Consensus 161 ~-----~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 161 D-----GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp T-----TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred C-----CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 0 0234455566666544589999999997422233222222222111124565566676664
No 203
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.76 E-value=0.0011 Score=61.77 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=52.4
Q ss_pred CccccccChHHHHHHHhc------cccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMT------DPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~------~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+..+|+|+.+++.++ ++++.+++++++|| +++|......+...++.+... +.++|+.||..+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG--SSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc--CCEEEEEEChHH
Confidence 456678999999999775 67788999999999 677777777788877776443 678999999974
No 204
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.75 E-value=0.0045 Score=65.40 Aligned_cols=24 Identities=46% Similarity=0.670 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|++++++|+|||||||++..+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999987543
No 205
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.54 E-value=0.0054 Score=63.00 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh--hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~--i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+|+++.-.+...+.+...-..|.. ..+.... +..+..+++.||+|+|||+++..+.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLK--HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 3577775555555544433222211 1122222 3567789999999999999887653
No 206
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.52 E-value=0.0008 Score=68.04 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=55.0
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHh-cCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccccc---ceec---
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVL-EGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIG---EEVG--- 149 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll-~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~---~~vg--- 149 (727)
.+..|.+++|.|++||||||++..+.- -+...-. ...+.+.++++.+ ....+++.+.+....+.... ....
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDL 98 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhccc-ccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHH
Confidence 456889999999999999999875421 1221100 1122455666653 22233444443222111000 0000
Q ss_pred eeeeeccc-cccCccccccChHHHHHHHhccccccCCeeEEeeccC
Q 004850 150 YSIRFEDC-SSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAH 194 (727)
Q Consensus 150 ~~~~~~~~-~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEah 194 (727)
.....+.. ......+..++.|+.++..+ ..++.+++++|+||.+
T Consensus 99 ~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 99 MHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred HHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 00000000 01122333456666655433 3457788999999975
No 207
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.41 E-value=0.003 Score=70.05 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=28.9
Q ss_pred cCCCchHHHHHHHHhhhc----CC-EEEEEcCCCChhhchhhHH
Q 004850 63 KSLPVWQQKEEFLQVLKA----NQ-VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 63 ~~lp~~~~q~~ii~~i~~----g~-~vii~g~TGSGKTt~~~~~ 101 (727)
.+-.+++.|.+++..+.. ++ .++|.|+.||||||++...
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~ 65 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFI 65 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHH
Confidence 445567777777776532 24 9999999999999987643
No 208
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.014 Score=61.16 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=29.5
Q ss_pred cCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 183 ERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 183 ~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+-+++|||+|. ....+.++.++...........+|++++|++
T Consensus 131 ~~~~ii~lDE~d~-l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPEN-LLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSS-SCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHH-hhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 4567999999995 3367777776653222223567778899985
No 209
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.31 E-value=0.014 Score=64.72 Aligned_cols=24 Identities=50% Similarity=0.696 Sum_probs=20.4
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|++++++|+|||||||++..+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHH
Confidence 357899999999999999988543
No 210
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.27 E-value=0.0092 Score=58.74 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHhhhcCC---EEEEEcCCCChhhchhhHHH
Q 004850 73 EFLQVLKANQ---VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 73 ~ii~~i~~g~---~vii~g~TGSGKTt~~~~~l 102 (727)
.+...+..++ .+++.|++|+||||++..+.
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3334444444 78999999999999987553
No 211
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.18 E-value=0.007 Score=66.99 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+.-..++--+..|+.++|.|++|+||||++.++..+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3345555567899999999999999999998876543
No 212
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.14 E-value=0.0091 Score=57.88 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHhc
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
..|...++.|+.||||||.+...+.+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999998876544
No 213
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.08 E-value=0.029 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..+++.||+|+||||++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999887554
No 214
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.07 E-value=0.017 Score=61.77 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.8
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++|.||+|+||||++..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999987654
No 215
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.03 E-value=0.02 Score=61.02 Aligned_cols=29 Identities=34% Similarity=0.336 Sum_probs=24.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
-+..|+++.|.|++||||||+..++..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999988876543
No 216
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.016 Score=61.37 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=27.6
Q ss_pred ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 182 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 182 l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..+++++||||+|. ++.+..-.+++.+....++..+|+.|+..+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 55889999999985 555544444444433334677888887753
No 217
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.96 E-value=0.0037 Score=67.15 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=55.2
Q ss_pred ccccccChHHHHHHHhccccc------cCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 162 TVLKYLTDGMLLREAMTDPLL------ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll------~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
..+..+|+|+.+++.++.+++ .++++++||| ++++......++.+++++... +..+|++||.++.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~--g~tvi~itH~~~~ 347 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL--NKVIVFITHDREF 347 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS--SSEEEEEESCHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEecchHH
Confidence 456679999999999988876 7999999999 788888888888888887533 7899999999864
No 218
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.95 E-value=0.0024 Score=73.34 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=31.6
Q ss_pred ccCCeeEEeeccC--------cChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 182 LERYKVIVLDEAH--------ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 182 l~~~~~lIlDEah--------er~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...++++++||.+ ++......+..+++.+......+.+++.+|+++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 3478999999973 223334457777777665555777888888775
No 219
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.92 E-value=0.015 Score=61.53 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=76.5
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH-hccccccce
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE-EMDVTIGEE 147 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~-~~~~~~~~~ 147 (727)
+--.+++.-+..|+.++|.|++|+||||+..++..+... . . ..+++++-+ ....++..++.. ..+.....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~----g-~~Vl~fSlE--ms~~ql~~Rlls~~~~v~~~~- 104 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D----D-RGVAVFSLE--MSAEQLALRALSDLTSINMHD- 104 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T----T-CEEEEEESS--SCHHHHHHHHHHHHHCCCHHH-
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c----C-CeEEEEeCC--CCHHHHHHHHHHHhhCCCHHH-
Confidence 334455556788999999999999999999887765431 1 1 122334333 122333444322 22211100
Q ss_pred eceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
... ..++++...++..+-..+.+..+.|.|+.. +..+.+...++.+.+..++..+|++
T Consensus 105 ---------l~~-----g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~---~si~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 105 ---------LES-----GRLDDDQWENLAKCFDHLSQKKLFFYDKSY---VRIEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp ---------HHH-----TCCCHHHHHHHHHHHHHHHHSCEEEECCTT---CCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ---------Hhc-----CCCCHHHHHHHHHHHHHHhcCCeEEeCCCC---CcHHHHHHHHHHHHHhcCCCCEEEE
Confidence 000 136788887777665567777888988854 4566677778777766545666665
No 220
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.84 E-value=0.019 Score=52.69 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHhhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 74 FLQVLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 74 ii~~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
+-.+...+..+++.||+|+|||++...+.-
T Consensus 17 ~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 17 LQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp HHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 333446777899999999999998876543
No 221
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.81 E-value=0.029 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..+++.||+||||||++..+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999987654
No 222
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.77 E-value=0.029 Score=55.91 Aligned_cols=28 Identities=39% Similarity=0.719 Sum_probs=24.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+..|+.++|.|++|+|||++..+++.+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999887664
No 223
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.75 E-value=0.031 Score=59.51 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.0
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++.||+|+||||++..+
T Consensus 39 ~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35889999999999988754
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.73 E-value=0.039 Score=57.93 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=19.4
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++++++|++|+||||++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45778999999999999987643
No 225
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.73 E-value=0.0036 Score=58.84 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..|++++++||+||||||++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 489999999999999999998754
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.73 E-value=0.0043 Score=60.27 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=20.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..|++++++|||||||||++..+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHH
Confidence 457999999999999999998754
No 227
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.69 E-value=0.02 Score=56.28 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
..|...++.|+-||||||.+...+.+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457888999999999999988766543
No 228
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.037 Score=60.59 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=41.7
Q ss_pred cCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh--hhcCCEEEEEcCCCChhhchhhHH
Q 004850 36 MNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~--i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
|.....+.-+|++.+--+..++.+.+.-.+|+... +.... +...+-+++.||+|||||++...+
T Consensus 198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p--e~f~~~Gi~pprGILLyGPPGTGKTlLAkAi 263 (467)
T 4b4t_H 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSP--ERFATLGIDPPKGILLYGPPGTGKTLCARAV 263 (467)
T ss_dssp CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCH--HHHHHHTCCCCSEEEECSCTTSSHHHHHHHH
T ss_pred eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCH--HHHHHCCCCCCCceEeeCCCCCcHHHHHHHH
Confidence 33334455679998766777777766555554322 22222 455678999999999999887654
No 229
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.66 E-value=0.008 Score=71.72 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=57.8
Q ss_pred CccccccChHHHHHHHhccccccCCe--eEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYK--VIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~--~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
+..+..+|+|+.+|+.+++++..+++ ++|||| ++++..+.+.++.+++++... +..+|++||.++.
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~--G~TvivVtHd~~~ 528 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL--GNTVIVVEHDEEV 528 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT--TCEEEEECCCHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence 45677899999999999999998777 999999 889999999999999987543 7899999999864
No 230
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=95.62 E-value=0.02 Score=54.56 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=50.0
Q ss_pred CccccccChHHHHHHHhccccc----cCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll----~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
...+..+|+|++++..++..++ ..++++|||| +++|..+...+..+++++. .+.++|++||...
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~---~~~~~ivith~~~ 128 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS---KESQFIVITLRDV 128 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---TTSEEEEECSCHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc---cCCEEEEEEecHH
Confidence 4456789999999999999875 4468999999 6667777777888777753 3568999998853
No 231
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.62 E-value=0.067 Score=51.69 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=16.9
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.+++.||+|+|||+++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999877543
No 232
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.55 E-value=0.044 Score=58.32 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhc
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
-+..|+++.|.||+||||||++.++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999887654
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.52 E-value=0.0047 Score=61.18 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=20.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|+.++|+|||||||||++..+.
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999988543
No 234
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.52 E-value=0.043 Score=58.44 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.7
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..+..++|.||+|+||||++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999987554
No 235
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.52 E-value=0.025 Score=60.21 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..++|.|++|+||||++..+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987654
No 236
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.51 E-value=0.01 Score=62.98 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=52.4
Q ss_pred CccccccChHHHH------HHHhccccccCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 161 RTVLKYLTDGMLL------REAMTDPLLERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 161 ~~~i~~lT~G~l~------r~~~~~~ll~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
+..+..+|+|+.+ ++.++..++.+++++|||| +|+|......++.+++.+... +.++|++||..+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~~vi~~sH~~~ 315 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--IPQVILVSHDEE 315 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG--SSEEEEEESCGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEChHH
Confidence 4556789999999 4566677788999999999 788888888888888887544 568999999854
No 237
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.47 E-value=0.06 Score=56.39 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 72 EEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 72 ~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.++...+..|..++|.|+.|+||||++..+.
T Consensus 22 ~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 22 RKLEESLENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcCCHHHHHHHHH
Confidence 3344445557899999999999999998765
No 238
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.46 E-value=0.014 Score=69.36 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=58.6
Q ss_pred cCccccccChHHHHHHHhccccccCC--eeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~--~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+..+..+|+|+.||+.++..+..++ .++|||| ++++..+.+.++.+++++... +..+|++||.++.
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~--G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVVEHDEDT 568 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT--TCEEEEECCCHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHH
Confidence 35667789999999999999998874 8999999 899999999999999998543 7899999999864
No 239
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.46 E-value=0.035 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=21.9
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
..|...++.|+-||||||.+...+...
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999999888766543
No 240
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.41 E-value=0.016 Score=69.19 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=58.8
Q ss_pred cCccccccChHHHHHHHhccccccC--CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLER--YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~--~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+..+..+|+|+.||+.++..+..+ +.++|||| ++++..+.+.++.+++.+... +..+|++||.++.
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~--G~TVIvVeHdl~~ 585 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL--GNTLIVVEHDEDT 585 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECCCHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc--CCEEEEECCCHHH
Confidence 3566778999999999999999887 48999999 899999999999999998653 7899999999864
No 241
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.36 E-value=0.015 Score=68.68 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=58.9
Q ss_pred cCccccccChHHHHHHHhccccccCC--eeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccH
Q 004850 160 ARTVLKYLTDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEA 228 (727)
Q Consensus 160 ~~~~i~~lT~G~l~r~~~~~~ll~~~--~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~ 228 (727)
.+..+..+|+|+.||+.++..+..++ .++|||| ++++..+.+.++.+++.+... +..+|++||.++.
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~--G~TVIvVeHdl~~ 443 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG--GNSLFVVEHDLDV 443 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT--TCEEEEECCCHHH
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEcCCHHH
Confidence 35667789999999999999999988 5999999 898899999999999998543 7899999999963
No 242
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.053 Score=58.50 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=37.6
Q ss_pred cccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh--hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 41 SLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 41 ~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~--i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+.-+|++.+=-+..++.+++.-.+|+.. .+.... +...+-+++.||+|||||++...+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~--pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKH--PELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHC--HHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhC--HHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 34457888865566666666555555432 122222 3444668899999999998876543
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.33 E-value=0.0072 Score=59.95 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=20.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
....|+.++|+|||||||||++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999999988643
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.30 E-value=0.006 Score=59.41 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=18.7
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|+.++|+|||||||||++....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999988543
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.29 E-value=0.028 Score=56.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.....+++.||+|+|||++...+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999887543
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.26 E-value=0.0081 Score=57.41 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|+.++|+|||||||||++....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999988654
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.19 E-value=0.0066 Score=58.22 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|+.++++|++||||||++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999987653
No 248
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.17 E-value=0.0074 Score=60.09 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=18.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|++++|+|||||||||++..+.
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987654
No 249
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.10 E-value=0.047 Score=58.31 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..++|.||+|+||||++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999987554
No 250
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.09 E-value=0.05 Score=53.39 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCChhhchhhHHHh
Q 004850 79 KANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
..|.+.++.|+-||||||.+...+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999997665443
No 251
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.051 Score=58.92 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=39.7
Q ss_pred CcCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 35 MMNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 35 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.|.....+.-+|++.+=-+..++.+.+.-.+|+.....-----+....-+++.||+|||||++...+.
T Consensus 170 ~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 170 VMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred eeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHH
Confidence 34444445567999865555555555554444321111111123445679999999999998876543
No 252
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.06 E-value=0.01 Score=68.24 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=44.0
Q ss_pred hHHHHHHH----HhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHh
Q 004850 68 WQQKEEFL----QVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE 139 (727)
Q Consensus 68 ~~~q~~ii----~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~ 139 (727)
.+.|.+++ +++.+|+++++.+|||+|||..+..+.+..... ...+.++..+|.+...|+......+.+.
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 45565555 567899999999999999999887776643211 0122334455555555655555555543
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.05 E-value=0.081 Score=54.87 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeecccccc
Q 004850 81 NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSA 160 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~ 160 (727)
+.+++++|++|+||||++......-... ...+.++-..+.+..+......++...+..+.. + ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~--------~~- 161 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--E--------PG- 161 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--C--------TT-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--c--------CC-
Confidence 6689999999999999877543211100 113445555555554443333333322221110 0 00
Q ss_pred CccccccChHHHHHHHhccccccCCeeEEeeccCcChh-hHHHHHHHHHHHHH-hCCCCEEEEEcCcc
Q 004850 161 RTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTL-ATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (727)
Q Consensus 161 ~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~-~~d~ll~ll~~l~~-~~~~~~vil~SATl 226 (727)
...+..+....+......+++++|+|=+..... ..+.++..++.+.. ..++..++++.++.
T Consensus 162 -----~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 162 -----EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 122333333333322236899999999764320 23334443433322 24566666666654
No 254
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.01 E-value=0.057 Score=61.92 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=69.9
Q ss_pred CchHHHHHHHHhhhc--CCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhcccc
Q 004850 66 PVWQQKEEFLQVLKA--NQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVT 143 (727)
Q Consensus 66 p~~~~q~~ii~~i~~--g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~ 143 (727)
.++.-|.+++..+.. ..+.+|+|+-|.|||+++...+-.-. . . +++|-|...++..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~-----~--~~vtAP~~~a~~~l~~~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---G-----R--AIVTAPAKASTDVLAQFAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---S-----C--EEEECSSCCSCHHHHHHHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---h-----C--cEEECCCHHHHHHHHHHhhC-----
Confidence 346778888887765 45789999999999999887654321 1 1 25566665554444332211
Q ss_pred ccceeceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEc
Q 004850 144 IGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMS 223 (727)
Q Consensus 144 ~~~~vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~S 223 (727)
.+.|+.|..+. ....+.++||+|||- ++....+..++ .. ...++||
T Consensus 240 -------------------~i~~~~Pd~~~------~~~~~~dlliVDEAA--aIp~pll~~ll----~~---~~~v~~~ 285 (671)
T 2zpa_A 240 -------------------KFRFIAPDALL------ASDEQADWLVVDEAA--AIPAPLLHQLV----SR---FPRTLLT 285 (671)
T ss_dssp -------------------GCCBCCHHHHH------HSCCCCSEEEEETGG--GSCHHHHHHHH----TT---SSEEEEE
T ss_pred -------------------CeEEeCchhhh------hCcccCCEEEEEchh--cCCHHHHHHHH----hh---CCeEEEE
Confidence 15566665532 124568999999974 46655444443 32 2347777
Q ss_pred Cccc
Q 004850 224 ATLE 227 (727)
Q Consensus 224 ATl~ 227 (727)
.|++
T Consensus 286 tTv~ 289 (671)
T 2zpa_A 286 TTVQ 289 (671)
T ss_dssp EEBS
T ss_pred ecCC
Confidence 7874
No 255
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.99 E-value=0.09 Score=57.31 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.5
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+++++++|++||||||+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668999999999999987744
No 256
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.96 E-value=0.038 Score=53.41 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=27.6
Q ss_pred ccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 182 LERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 182 l~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
..++++|++||++- + .+ +.+.+..+... +.+||+..-..|
T Consensus 89 ~~~~DvIlIDEaQF--f-k~-~ve~~~~L~~~--gk~VI~~GL~~D 128 (195)
T 1w4r_A 89 ALGVAVIGIDEGQF--F-PD-IVEFCEAMANA--GKTVIVAALDGT 128 (195)
T ss_dssp HHTCSEEEESSGGG--C-TT-HHHHHHHHHHT--TCEEEEEEESBC
T ss_pred ccCCCEEEEEchhh--h-HH-HHHHHHHHHHC--CCeEEEEecccc
Confidence 34689999999984 3 33 56666666643 778888776665
No 257
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.96 E-value=0.04 Score=63.31 Aligned_cols=176 Identities=16% Similarity=0.238 Sum_probs=95.2
Q ss_pred CCEEEEEcCcccH-HHHHhhhcCC-CeeeeCCCccc---eeeeeccC-C------cccHHHHHHHHHHHHhhcCCCCCEE
Q 004850 216 DLKLVVMSATLEA-EKFQGYFYGA-PLMKVPGRLHP---VEIFYTQE-P------ERDYLEAAIRTVVQIHMCEPSGDIL 283 (727)
Q Consensus 216 ~~~vil~SATl~~-~~~~~~f~~~-p~i~v~g~~~~---v~~~y~~~-~------~~~~~~~~~~~l~~i~~~~~~g~iL 283 (727)
...+|++|||+.+ ..|.+.++-. ..+.++. .++ ...++... + ...+...+...+..+... .+|.+|
T Consensus 375 ~~~~il~SaTL~p~~~~~~~lGl~~~~~~~~s-pf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~l 452 (620)
T 4a15_A 375 ESKTIHMSGTLDPFDFYSDITGFEIPFKKIGE-IFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTI 452 (620)
T ss_dssp GSEEEEEESSCCSHHHHHHHHCCCCCEEECCC-CSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEE
T ss_pred CCeEEEEccCCCcHHHHHHHhCCCceeeecCC-CCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEE
Confidence 4689999999964 5555555432 1222221 121 11222111 1 112334455555555543 467899
Q ss_pred EecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecC--ccccCccc
Q 004850 284 VFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTN--IAETSLTI 361 (727)
Q Consensus 284 VFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTn--iAe~gitI 361 (727)
||+|+....+.+++.+. . -+.. ..-+++..++..+++.|. + ..-|+++|. ...-|||+
T Consensus 453 vlF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~-------~~~vL~~v~~gsf~EGiD~ 512 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-R-------DHGTIFAVSGGRLSEGINF 512 (620)
T ss_dssp EEESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-T-------SCCEEEEETTSCC------
T ss_pred EEeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-c-------CCcEEEEEecCceeccccC
Confidence 99999998887776664 1 1222 444555567788888887 5 567999974 78889999
Q ss_pred CC--eEEEEcCCCccceeecccc-----------C--ccccccccccHhhHHhhhcccCCC--CCceEEEe
Q 004850 362 DG--IVYVIDPGFAKQKVYNPRV-----------R--VESLLVSPISKASAHQRSGRAGRT--QPGKCFRL 415 (727)
Q Consensus 362 p~--V~~VId~g~~k~~~~~~~~-----------~--~~~l~~~pis~~~~~qR~GRaGR~--~~G~~~~L 415 (727)
|| .+.||=.|++-... ||.. | ...-...| ..-...|=+||.=|. -.|..+-+
T Consensus 513 ~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 513 PGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp --CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 87 46788778753321 2211 0 00001224 345567999999887 45766554
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.93 E-value=0.0092 Score=57.30 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
|++++++|||||||||++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999987654
No 259
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.91 E-value=0.11 Score=53.80 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.4
Q ss_pred cCCEEEEEcCCCChhhchhhH
Q 004850 80 ANQVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~ 100 (727)
.+..+++.||+|+|||++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 344799999999999998863
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.83 E-value=0.012 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..|+.++++|++||||||++..+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999987643
No 261
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.06 Score=58.87 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=38.0
Q ss_pred CcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh--hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 40 NSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 40 ~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~--i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..+.-+|++.+--+..++.+.+.-.+|+... +.... +...+-+++.||+|||||++...+.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p--~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNP--EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCH--HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCH--HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 3445578888655555555555544444321 12221 3455779999999999999876543
No 262
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.78 E-value=0.012 Score=64.03 Aligned_cols=61 Identities=23% Similarity=0.195 Sum_probs=38.3
Q ss_pred ccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
..+..++.|+.++..++..++..|.+||+-=.| .... ..+..+++..... +..++.+||.-
T Consensus 248 ~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlD--l~~~-~~~~~l~~~l~~~-g~~vi~iSA~~ 308 (416)
T 1udx_A 248 EPLKTLETLRKEVGAYDPALLRRPSLVALNKVD--LLEE-EAVKALADALARE-GLAVLPVSALT 308 (416)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCT--TSCH-HHHHHHHHHHHTT-TSCEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCC--hhhH-HHHHHHHHHHHhc-CCeEEEEECCC
Confidence 344457788888888887788899999984343 3333 2333344433332 56788888765
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.77 E-value=0.01 Score=58.01 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
...|+.++|+|++||||||++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999998743
No 264
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.046 Score=59.69 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=41.5
Q ss_pred cCCCCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHH--hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 36 MNNNNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQ--VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 36 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~--~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
|.....+..+|++.+--+..++.+.+.-.+|+... +... -+...+-+++.||+|||||++...+.
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~p--e~f~~~g~~~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRA--DKFKDMGIRAPKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCS--HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCH--HHHHhCCCCCCCeeEEECcCCCCHHHHHHHHH
Confidence 33344556689999777777776665544444321 1221 23445679999999999998876543
No 265
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.72 E-value=0.066 Score=56.75 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+..|+++.|.|++||||||+..++..+.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999887764
No 266
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.71 E-value=0.023 Score=62.32 Aligned_cols=21 Identities=52% Similarity=0.776 Sum_probs=17.8
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
.+++++|++|+||||++....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 488999999999999887544
No 267
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.71 E-value=0.024 Score=63.78 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=52.7
Q ss_pred cccc-ChHHHHHHHhccccccCC--eeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcccHH
Q 004850 164 LKYL-TDGMLLREAMTDPLLERY--KVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAE 229 (727)
Q Consensus 164 i~~l-T~G~l~r~~~~~~ll~~~--~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~~~ 229 (727)
+..+ |+|+++++.++.+++.++ ++||+|| ++++......+..+++++.. +.++|++||.++..
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~~~~ 461 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLAQIA 461 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHH
Confidence 4445 999999999999999999 9999999 66677777788888888754 57999999997543
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.70 E-value=0.047 Score=57.20 Aligned_cols=122 Identities=7% Similarity=0.052 Sum_probs=66.1
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHh-ccccccce
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEE-MDVTIGEE 147 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~-~~~~~~~~ 147 (727)
+--..++--+..|+.++|.|++|+||||+..++..+.. ... .. +++++-+ .....+..++... .+.....
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g----~~-vl~~slE--~s~~~l~~R~~~~~~~i~~~~- 126 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND----DV-VNLHSLE--MGKKENIKRLIVTAGSINAQK- 126 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT----CE-EEEEESS--SCHHHHHHHHHHHHTTCCHHH-
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC----Ce-EEEEECC--CCHHHHHHHHHHHHcCCCHHH-
Confidence 33455665588999999999999999999998776543 111 12 3344433 2222333444321 1211100
Q ss_pred eceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhC
Q 004850 148 VGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNR 214 (727)
Q Consensus 148 vg~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~ 214 (727)
.. ... ..++++...++..+...+.+..++|.|+.. .+.+.+...++.+....
T Consensus 127 ---------l~--~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~---~~~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 127 ---------IK--AAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG---QSVNYIWSKTRQTKRKN 178 (315)
T ss_dssp ---------HH--SCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC---CBHHHHHHHHHHHHHTS
T ss_pred ---------Hh--cCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC---CCHHHHHHHHHHHHHhc
Confidence 00 000 124555555544443445566788888754 44556677777765543
No 269
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.65 E-value=0.058 Score=61.84 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.....+-..+..|+.+++.||+||||||++..+.
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 3446677778899999999999999999987653
No 270
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.64 E-value=0.045 Score=60.65 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.5
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
.-+++.||+|+||||++..+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458899999999999987553
No 271
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.61 E-value=0.13 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=18.9
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..+++.||+|+||||++..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34678999999999999987554
No 272
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.60 E-value=0.012 Score=62.94 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=25.1
Q ss_pred HHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 73 EFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 73 ~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+--.+..|+.++|+|+|||||||++..++
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 344457899999999999999999988654
No 273
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.11 Score=56.60 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=38.2
Q ss_pred CCcccCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHh--hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 39 NNSLINRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQV--LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 39 ~~~~~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~--i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+.-+|++.+=-+..++.+.+.-.+|+... +.... +...+-+++.||+|||||++...+.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p--~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQA--DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCH--HHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCH--HHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 33445578888655666665655444444221 12222 3455678999999999999876543
No 274
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.54 E-value=0.039 Score=60.71 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCeeEEeeccCcCh---hhHHHHHHHHHHHHHhCCCCEEEEEcCc
Q 004850 184 RYKVIVLDEAHERT---LATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (727)
Q Consensus 184 ~~~~lIlDEaher~---~~~d~ll~ll~~l~~~~~~~~vil~SAT 225 (727)
++++|+|||+|.-. ...+.++..+..+... +.++|+.|+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~--~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT--TCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 68899999998422 1234456666555432 5677776665
No 275
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.51 E-value=0.022 Score=59.32 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHHHHhhhcCCEEEEEcCCCChhhchhhHH
Q 004850 72 EEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 72 ~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+--.+..|+.++|+|||||||||++..+
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHH
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHH
Confidence 344456789999999999999999998754
No 276
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.45 E-value=0.017 Score=56.52 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|+.++++|||||||||++....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHH
Confidence 478999999999999999987654
No 277
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.44 E-value=0.079 Score=53.89 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+++.||+|+|||++...+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999999887554
No 278
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.35 E-value=0.081 Score=55.54 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
-+..|+.+.|.|++||||||+..++..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 35678999999999999999999887653
No 279
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.32 E-value=0.016 Score=56.62 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..|+.++|+|++||||||++..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999998754
No 280
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.31 E-value=0.17 Score=57.70 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=45.4
Q ss_pred CchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 66 p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
.+++.|..++..+...+.+++.++-|+|||+++...++... ...+ +..+++..+..-++..+.+.+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~-~~~~----~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFV-CFNK----DKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHH-HTSS----SCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHH-HhCC----CCeEEEEECCHHHHHHHHHHHHH
Confidence 46899999999886678899999999999998764433222 1111 22345555666666666655543
No 281
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.25 E-value=0.25 Score=51.94 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=21.5
Q ss_pred HHHHhhhcCC---EEEEEcCCCChhhchhhHH
Q 004850 73 EFLQVLKANQ---VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 73 ~ii~~i~~g~---~vii~g~TGSGKTt~~~~~ 101 (727)
.+...+..|+ .+++.||.|+|||++...+
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 3445555665 5889999999999987644
No 282
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.06 Score=56.75 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=20.9
Q ss_pred HHHHhhhcC--CEEEEEcCCCChhhchhhHH
Q 004850 73 EFLQVLKAN--QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 73 ~ii~~i~~g--~~vii~g~TGSGKTt~~~~~ 101 (727)
.+...+..+ ..+++.||+|+||||++..+
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 344444444 44899999999999987644
No 283
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.16 E-value=0.065 Score=56.28 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=33.6
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHH-HhhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFL-QVLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii-~~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
.+|+++.-.+..++.+.+.-.+|+... ++. ........+++.||+|||||++...+.-
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~--~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFP--HLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCG--GGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCH--HHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 357777655666655554322221100 000 0123346799999999999999876543
No 284
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.15 E-value=0.11 Score=53.77 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.9
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.+++.||+|+||||+...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 68999999999999877543
No 285
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.07 E-value=0.19 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
....+++.||+|+|||+++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999887653
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.06 E-value=0.022 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.9
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..|++++|+|++||||||++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998754
No 287
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.01 E-value=0.16 Score=54.11 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+..|++++|.|++||||||+..++..+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998877653
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.96 E-value=0.026 Score=54.90 Aligned_cols=24 Identities=17% Similarity=0.552 Sum_probs=21.0
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|+.++|+||+||||||++...+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHH
Confidence 378999999999999999988654
No 289
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.95 E-value=0.028 Score=62.96 Aligned_cols=42 Identities=26% Similarity=0.341 Sum_probs=29.7
Q ss_pred HHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 60 EKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 60 ~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+.++.. .-..+--.+..|+.++|+|||||||||++...+
T Consensus 240 ~~~G~~~~~-~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 240 IEKGTVPSG-VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHTTSSCHH-HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HhcCCCCHH-HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 344545433 233444567899999999999999999987643
No 290
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.90 E-value=0.13 Score=57.68 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+++.||+|+||||++..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999887654
No 291
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.86 E-value=0.22 Score=52.02 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.9
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
..++|.|+.|+|||+++..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998765
No 292
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.84 E-value=0.15 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
....+++.||+|+|||+++..+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999987654
No 293
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.72 E-value=0.047 Score=57.25 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+|+++.-.+..++.+...-.+|.... ..+-........+++.||+|+|||++...+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFP-HLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCG-GGCCTTCCCCCEEEEECSSSSCHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCH-HHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 357777655666655554332221100 0000112234679999999999999887553
No 294
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.72 E-value=0.28 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.3
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
..+++.||+|+|||+++..+.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHH
Confidence 356777889999999887653
No 295
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.65 E-value=0.44 Score=51.11 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHH
Q 004850 65 LPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVA 137 (727)
Q Consensus 65 lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~ 137 (727)
+.+++.|..++..+...+.+++..+-+.|||+++...++....... +..+++..+..-++..+.+.+.
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----g~~v~~vA~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRTK 229 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----SCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHH
Confidence 3668999999998866788999999999999987654433211111 2235555666666666665553
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.65 E-value=0.26 Score=54.91 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=58.6
Q ss_pred CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccccC
Q 004850 82 QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAR 161 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~ 161 (727)
.+++++|.+|+||||++......-... ...+.++...+.+..+....+..+...+..+ ++.. . .
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~-----G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~~~------~-~- 165 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK-----GWKTCLICADTFRAGAFDQLKQNATKARIPF---YGSY------T-E- 165 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EECC------C-C-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEeccccchhHHHHHHHHhhccCceE---EccC------C-C-
Confidence 378899999999999987655321100 1133455555555444333232332222211 1100 0 0
Q ss_pred ccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH-hCCCCEEEEEcCcc
Q 004850 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSATL 226 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~-~~~~~~vil~SATl 226 (727)
..+..+.+..+......+++++|+|-+.....+..+ ...+..+.. ..++..++++.|+.
T Consensus 166 -----~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l-~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 166 -----MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSL-FEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp -----SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHH-HHHHHHHHHHHCCSEEEEEEETTC
T ss_pred -----CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhH-HHHHHHHHhhhcCceEEEEEeccc
Confidence 011122221222212368899999998743333332 222222221 24566677777764
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.63 E-value=0.022 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
|++++++|++||||||++....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 5688999999999999988664
No 298
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.48 E-value=0.25 Score=51.71 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++.||+|+|||+++..+
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 46889999999999998765
No 299
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.46 E-value=0.31 Score=52.06 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.2
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
-+..|..+.|.|++||||||+..++..+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 35578999999999999999998876653
No 300
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.45 E-value=0.22 Score=54.71 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=66.9
Q ss_pred HHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHH-HHhcccccccee
Q 004850 70 QKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRV-AEEMDVTIGEEV 148 (727)
Q Consensus 70 ~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v-~~~~~~~~~~~v 148 (727)
.-..++.-+..|+.++|.|++|+||||+..++..+... .. ...+ ++++-+- ...++..++ +...+.....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~---g~~v-l~~slE~--~~~~l~~R~~~~~~~i~~~~-- 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-KE---GVGV-GIYSLEM--PAAQLTLRMMCSEARIDMNR-- 259 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT---CCCE-EEEESSS--CHHHHHHHHHHHHTTCCTTT--
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hC---CCeE-EEEECCC--CHHHHHHHHHHHHcCCCHHH--
Confidence 34555555778999999999999999999887765431 10 1123 3333331 122334443 2222221110
Q ss_pred ceeeeeccccccCccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEE
Q 004850 149 GYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVM 222 (727)
Q Consensus 149 g~~~~~~~~~~~~~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~ 222 (727)
.. . ..++++...+...+-..+....+.|.|+.. +..+.+...++.+.... +..+|++
T Consensus 260 --------l~--~---g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~---~s~~~l~~~~~~l~~~~-~~~lIvI 316 (444)
T 2q6t_A 260 --------VR--L---GQLTDRDFSRLVDVASRLSEAPIYIDDTPD---LTLMEVRARARRLVSQN-QVGLIII 316 (444)
T ss_dssp --------CC--G---GGCCHHHHHHHHHHHHHHHTSCEEEECCTT---CBHHHHHHHHHHHHHHS-CCCEEEE
T ss_pred --------Hh--C---CCCCHHHHHHHHHHHHHHhcCCEEEECCCC---CCHHHHHHHHHHHHHHc-CCCEEEE
Confidence 00 0 125666655544433334555677777643 34555666677666554 4455544
No 301
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.35 E-value=0.17 Score=48.86 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=27.8
Q ss_pred cCCeeEEeecc----CcChhhHHHHHHHHHHHHHhCC-CCEEEEEcCcccHH
Q 004850 183 ERYKVIVLDEA----HERTLATDVLFGLLKEVLKNRP-DLKLVVMSATLEAE 229 (727)
Q Consensus 183 ~~~~~lIlDEa----her~~~~d~ll~ll~~l~~~~~-~~~vil~SATl~~~ 229 (727)
.++++|||||. +.+.+..+.+++++. .+| ..-+|+.+-..+.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~----~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALN----ARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHH----TSCTTCEEEEECSSCCHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHH----hCcCCCEEEEECCCCcHH
Confidence 67999999994 445566666665543 355 55666666655443
No 302
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.29 E-value=0.2 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..+++.||+|+|||++...+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999887543
No 303
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.22 E-value=0.15 Score=54.34 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+++.||+|||||++...+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 4568899999999999887554
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.20 E-value=0.031 Score=60.93 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|..++|+|||||||||++..++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999988654
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.06 E-value=0.035 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.2
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|+.++++|++||||||+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999998754
No 306
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.06 E-value=0.37 Score=52.61 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=58.6
Q ss_pred CEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHHhccccccceeceeeeeccccccC
Q 004850 82 QVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAR 161 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~~~~~~~~~~vg~~~~~~~~~~~~ 161 (727)
.+++++|++|+||||........-... . ...+.++...+.+..+......++...+..+.. ..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~-~---G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~-------------~~ 163 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK-H---KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP-------------SD 163 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-S---CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC-------------CC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-c---CCeEEEEecCCCCccHHHHHHhhcccCCeeEEe-------------CC
Confidence 478889999999999876443221100 0 113445666665555443332233322221100 00
Q ss_pred ccccccChHHHHHHHhccccccCCeeEEeeccCcChhhHHHHHHHHHHHHH-hCCCCEEEEEcCc
Q 004850 162 TVLKYLTDGMLLREAMTDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLK-NRPDLKLVVMSAT 225 (727)
Q Consensus 162 ~~i~~lT~G~l~r~~~~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~-~~~~~~vil~SAT 225 (727)
. ..++..+.+..+......+++++|+|=+.....+ +.+...+..+.. ..|+..++++.|+
T Consensus 164 ~---~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~-~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 164 V---GQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD-EAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp S---SSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTC-HHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred C---CCCHHHHHHHHHHHHHhCCCCEEEEECCCccccc-HHHHHHHHHHHHhhcCcceeEEeecc
Confidence 0 0133333333333222358999999997632222 233333443332 2344455555554
No 307
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.00 E-value=0.071 Score=61.63 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=41.2
Q ss_pred chHHHHHHHHhhh-cCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 67 VWQQKEEFLQVLK-ANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 67 ~~~~q~~ii~~i~-~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
+.+.|.+++..+. .....+|.||+|||||+.+...+..-.. . +..|+++-|.-.++-.+++++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--Q-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--T-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--C-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 3556777776654 5668999999999999987765543221 1 11244444555566666666643
No 308
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.97 E-value=0.23 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+++.||+|+|||+++..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999887653
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.96 E-value=0.037 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
...|++++++|++||||||+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 467899999999999999987643
No 310
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.81 E-value=0.048 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.7
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.++.++|+|++||||||++..+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999987643
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.80 E-value=0.04 Score=51.71 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=18.7
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..++++|++||||||+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3578999999999999998754
No 312
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.69 E-value=0.051 Score=52.58 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=19.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..++.++++|++||||||+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHH
Confidence 456889999999999999987754
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.48 E-value=0.053 Score=51.37 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.1
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
..+|+|+|||||||++-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 8899999999999998754
No 314
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.41 E-value=0.042 Score=54.59 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.1
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..|..++|.|++||||||++..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999988653
No 315
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.40 E-value=0.05 Score=57.77 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.0
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
-.+..|+.++|+|+|||||||++..+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~ 92 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMIC 92 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999999977554
No 316
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.37 E-value=0.048 Score=59.35 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=23.4
Q ss_pred HHHhhhcCCE--EEEEcCCCChhhchhhHHH
Q 004850 74 FLQVLKANQV--IILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 74 ii~~i~~g~~--vii~g~TGSGKTt~~~~~l 102 (727)
+--.+..|+. ++|+|+|||||||++..+.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 3345789999 9999999999999998654
No 317
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.31 E-value=0.3 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.5
Q ss_pred cCCEEEE--EcCCCChhhchhhHHH
Q 004850 80 ANQVIIL--VGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii--~g~TGSGKTt~~~~~l 102 (727)
.+..++| .|++|+||||++..+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHH
Confidence 3457777 8999999999987654
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.27 E-value=0.05 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|..++++|++||||||+.....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999887643
No 319
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.10 E-value=0.091 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.4
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..|++++|+|++||||||++..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 67889999999999999998754
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.04 E-value=0.11 Score=54.48 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=21.3
Q ss_pred HHHhhhcCC------EEEEEcCCCChhhchhhHH
Q 004850 74 FLQVLKANQ------VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 74 ii~~i~~g~------~vii~g~TGSGKTt~~~~~ 101 (727)
+...+..++ +++|.|++||||||++..+
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHH
Confidence 334455555 8999999999999998653
No 321
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.94 E-value=0.059 Score=55.23 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHHhh--hcCCEEEEEcCCCChhhchhhHHH
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQVL--KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~~i--~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+|++.+--+..++.+.+.-.+|... .+++..+ .-..-+++.||+||||||++..+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~--~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRN--PDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHS--HHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhC--HHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 46888876677777666544444322 2344432 222338999999999999988654
No 322
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.92 E-value=0.07 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..|.+++|.|++||||||+...+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999987543
No 323
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.89 E-value=0.37 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=19.8
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
...++.++.|+.||||||.+...+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHh
Confidence 355688999999999999987654
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.87 E-value=0.044 Score=53.28 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=23.2
Q ss_pred HHHhhhcCCEEEEEcCCCChhhchhhHH
Q 004850 74 FLQVLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 74 ii~~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+.+.+..+..++|+|++||||||+....
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3455677889999999999999998754
No 325
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.85 E-value=0.42 Score=49.63 Aligned_cols=45 Identities=16% Similarity=0.391 Sum_probs=26.3
Q ss_pred ccccccCCeeEEeeccCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCc
Q 004850 178 TDPLLERYKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT 225 (727)
Q Consensus 178 ~~~ll~~~~~lIlDEaher~~~~d~ll~ll~~l~~~~~~~~vil~SAT 225 (727)
..+...+.+++|+||+|. +..+..-.++ +.+...|+..++++.++
T Consensus 76 ~~p~~~~~kvviIdead~--lt~~a~naLL-k~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 76 YSPELYTRKYVIVHDCER--MTQQAANAFL-KALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SCCSSSSSEEEEETTGGG--BCHHHHHHTH-HHHHSCCTTEEEEEEES
T ss_pred hccccCCceEEEeccHHH--hCHHHHHHHH-HHHhCCCCCeEEEEEEC
Confidence 344566789999999985 3333333333 34455555555555444
No 326
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.81 E-value=0.054 Score=51.35 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
+.++|+|++||||||++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999998754
No 327
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.80 E-value=0.46 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.....+++.||+|+|||++...+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHH
Confidence 445679999999999999887653
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.60 E-value=0.071 Score=56.96 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=22.2
Q ss_pred Hhhhc--CCEEEEEcCCCChhhchhhHH
Q 004850 76 QVLKA--NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 76 ~~i~~--g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+.. ++.++|+|++||||||++..+
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHH
Confidence 34667 899999999999999998854
No 329
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.56 E-value=0.11 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|+.++++|+|||||||++..+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999999999876
No 330
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.48 E-value=0.08 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=22.5
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|+.++++|++||||||++..+.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998654
No 331
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.43 E-value=0.1 Score=55.55 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=21.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
...|+.++++|+||+||||++..+.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHHHh
Confidence 4579999999999999999997654
No 332
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.30 E-value=0.081 Score=58.01 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.9
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
-.+..|+.++|+|++||||||++..+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Ia 178 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMA 178 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 446799999999999999999977543
No 333
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.21 E-value=0.081 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+.+++|.|++||||||++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999988743
No 334
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.00 E-value=0.068 Score=51.66 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.6
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..|..++++|++||||||++..+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 457888999999999999998754
No 335
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.97 E-value=0.18 Score=58.04 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=43.2
Q ss_pred chHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 67 ~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
....|.+++..+..+..++|.||+|+|||+.+...+..-... . +..|+++-|...++-.+.+++..
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~-~-----~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-G-----NGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS-S-----SCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc-C-----CCeEEEEeCcHHHHHHHHHHHHh
Confidence 467889999888888899999999999999876544321100 1 11234444555555666666643
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.87 E-value=0.1 Score=51.24 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..++|+|++||||||+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999988754
No 337
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.74 E-value=0.23 Score=54.22 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=48.3
Q ss_pred cccccChHHHHHHHhccccc----cCCeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCcc
Q 004850 163 VLKYLTDGMLLREAMTDPLL----ERYKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATL 226 (727)
Q Consensus 163 ~i~~lT~G~l~r~~~~~~ll----~~~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl 226 (727)
.+..+|+|+.++..++..++ ..+.+++||| +++|......+..+++.+.. .+.++|++||..
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~~ 397 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLKN 397 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSCH
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECCH
Confidence 34569999999999998876 5799999999 56666666667777766532 267999999974
No 338
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.74 E-value=0.13 Score=53.39 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=34.8
Q ss_pred CCCCCCCCChHHHHHHHHhcCCCchHHHHHHHH-hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 44 NRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQ-VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 44 ~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~-~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+|+++.-.+...+.+.+.-..|+. ..+.+.. .+..+..+++.||+|||||+++..+.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~-~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVE-HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHH-CHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhh-CHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHH
Confidence 3577775555555555443222221 1112222 24567889999999999999987654
No 339
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.73 E-value=0.096 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.0
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..++++|++||||||+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5788999999999999987643
No 340
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.61 E-value=0.21 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..+++.|++|+|||+++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHH
Confidence 34678999999999999887543
No 341
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.51 E-value=0.15 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHH
Q 004850 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 68 ~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..+.+. ..+..|..+++.|++||||||+....
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 3444444 44678899999999999999987753
No 342
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.41 E-value=0.11 Score=57.59 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+.. ++++|+|||||||||++..+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l 49 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGF 49 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHH
Confidence 456 89999999999999998744
No 343
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.38 E-value=0.12 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=19.8
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhH
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~ 100 (727)
.....+..+++.|++|+|||++...
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHHHGG
T ss_pred HHhCCCCcEEEECCCCccHHHHHHH
Confidence 3345677899999999999987654
No 344
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.31 E-value=0.38 Score=52.73 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCc
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGV 106 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~ 106 (727)
+--.+++.-+..|+.++|.|++|+||||+..++..+..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 33455555578899999999999999999998876643
No 345
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.30 E-value=0.11 Score=58.52 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+.+|++++++|++||||||+....
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHH
Confidence 4568999999999999999987743
No 346
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.28 E-value=0.13 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.3
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..+++.|++||||||+....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999987754
No 347
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.22 E-value=0.14 Score=53.07 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|+.++++|++||||||++..+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 34578999999999999999988543
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.22 E-value=0.095 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=18.9
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..++++|++||||||+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999987754
No 349
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.09 E-value=0.14 Score=47.18 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=16.9
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
...+|+|||||||||++--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 47889999999999987643
No 350
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.03 E-value=0.085 Score=54.95 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=21.9
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..|+.++++|++|+||||++..+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHh
Confidence 4567999999999999999998864
No 351
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.03 E-value=0.13 Score=47.82 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.3
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
.++++.|++||||||+....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999988765
No 352
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.95 E-value=0.23 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.1
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
..+++.|++|+|||+++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999999876543
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.92 E-value=1.1 Score=49.71 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCc
Q 004850 69 QQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGV 106 (727)
Q Consensus 69 ~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~ 106 (727)
+.-.+++.-+..|+.++|.|++|+||||+..++..+..
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 33455555578899999999999999999998887644
No 354
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.90 E-value=0.1 Score=54.69 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.8
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
++++|+|++||||||++..++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 478999999999999998766
No 355
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.85 E-value=0.15 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.2
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
+.+++.||+||||||++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 678999999999999987653
No 356
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.78 E-value=0.14 Score=47.56 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.6
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999988754
No 357
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.65 E-value=0.16 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..++++|++||||||+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987654
No 358
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.55 E-value=0.13 Score=55.08 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=17.5
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.| .++|+|||||||||++-.+
T Consensus 23 ~g-~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 23 SG-ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp SE-EEEEECCTTSSHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHH
Confidence 45 7889999999999998643
No 359
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.48 E-value=0.98 Score=53.04 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.3
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.||||+|||++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999987643
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.42 E-value=0.14 Score=49.41 Aligned_cols=19 Identities=47% Similarity=0.637 Sum_probs=16.8
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
+++++|++||||||+....
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999988765
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.42 E-value=0.14 Score=50.44 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.7
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+...+++++.||+||||+|+...+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHH
Confidence 4566778999999999999997654
No 362
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.24 E-value=0.15 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=18.0
Q ss_pred CEEEEEcCCCChhhchhhHHHh
Q 004850 82 QVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ll 103 (727)
+.++|+||+||||||++...+-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999876543
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.23 E-value=0.12 Score=48.89 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..+++.|++||||||+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 46778999999999999987754
No 364
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.21 E-value=0.27 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..+++.||+|+|||+++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5688999999999999887543
No 365
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.14 E-value=0.3 Score=57.69 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=43.0
Q ss_pred chHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 67 ~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
....|.+++..+..+..++|.||+|+|||+.+...+..-... . +..|+++-|...++-.+.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~-~-----~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-G-----NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT-C-----SSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc-C-----CCcEEEEcCcHHHHHHHHHHHHH
Confidence 467788999888888999999999999999876544321100 1 11244444555565566666543
No 366
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.08 E-value=0.21 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..|+.+++.||+||||||++....
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987544
No 367
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.08 E-value=0.16 Score=48.33 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..|..++++|.+||||||+....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 35788999999999999988753
No 368
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.99 E-value=0.18 Score=47.65 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=18.1
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..++++|++||||||+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987754
No 369
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.99 E-value=0.17 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=18.8
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++||||||++..+.-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999877643
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.95 E-value=0.18 Score=48.49 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.3
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..+++.|+.||||||+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 5778999999999999998754
No 371
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.92 E-value=0.43 Score=50.96 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=45.6
Q ss_pred cccccChHHHHHHH------hccccccC-CeeEEeec--cCcChhhHHHHHHHHHHHHHhCCCCEEEEEcCccc
Q 004850 163 VLKYLTDGMLLREA------MTDPLLER-YKVIVLDE--AHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLE 227 (727)
Q Consensus 163 ~i~~lT~G~l~r~~------~~~~ll~~-~~~lIlDE--aher~~~~d~ll~ll~~l~~~~~~~~vil~SATl~ 227 (727)
.+..+|+|+++++. +++.+..+ ++++|||| ++.+......+...++.+ ..+.+++++||..+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~---~~~~~vi~~th~~~ 347 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV---KSIPQMIIITHHRE 347 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC---CSCSEEEEEESCGG
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh---ccCCeEEEEEChHH
Confidence 45679999999874 44666778 99999999 556656666666666653 22468999999865
No 372
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.86 E-value=0.15 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.6
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..+++.|++||||||+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4568899999999999987654
No 373
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.85 E-value=0.27 Score=58.05 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=44.2
Q ss_pred chHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHHHhcCccCCCccccCceEEEEcccchhhhccHHHHHHH
Q 004850 67 VWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQFVLEGVDIETPDRRRKMMIACTQPRRVAAMSVSRRVAE 138 (727)
Q Consensus 67 ~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ll~~~~~~~~~~~~~~~i~~t~p~~~~~~~v~~~v~~ 138 (727)
+...|.+++..+..+..++|.||+|||||+.+...+..-... . +..|++.-|...++-.+.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~---~---~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI---H---KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH---H---CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC---C---CCeEEEEcCcHHHHHHHHHHHHh
Confidence 457899999998888999999999999999876544321100 0 11244444555666667777654
No 374
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.84 E-value=0.18 Score=47.30 Aligned_cols=21 Identities=38% Similarity=0.744 Sum_probs=17.5
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
..+++.|++||||||+.....
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 368899999999999987653
No 375
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.83 E-value=0.17 Score=48.80 Aligned_cols=20 Identities=40% Similarity=0.507 Sum_probs=17.0
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++|+|++||||||+.....
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999999877543
No 376
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.82 E-value=0.15 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++|+|++||||||+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 357999999999999987754
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.76 E-value=0.2 Score=47.71 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=20.3
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
...+..+++.|++||||||+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999987754
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.66 E-value=0.2 Score=50.57 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
|+.++|+|++||||||+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 999999999999999997754
No 379
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=88.58 E-value=0.28 Score=52.21 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=40.1
Q ss_pred cccc-ccChHHHHHHHhccccc---------cCCeeEEeec--cCcChhhHHHHHHHHHHH
Q 004850 162 TVLK-YLTDGMLLREAMTDPLL---------ERYKVIVLDE--AHERTLATDVLFGLLKEV 210 (727)
Q Consensus 162 ~~i~-~lT~G~l~r~~~~~~ll---------~~~~~lIlDE--aher~~~~d~ll~ll~~l 210 (727)
..+. ++|.|+.+++.++..++ .++.+++||| +++|......+++.+..+
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 3455 79999999999999988 7999999999 677777777777776654
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.58 E-value=0.2 Score=47.90 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=19.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..+..+++.|++||||||+....
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 445778999999999999987654
No 381
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.57 E-value=0.18 Score=48.36 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=18.6
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..+.-.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4788999999999999887643
No 382
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.45 E-value=0.19 Score=50.74 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.4
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.++|+|+|||||||+....
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6789999999999987654
No 383
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.44 E-value=0.17 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=20.4
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..|..+++.|++||||||+....
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHH
Confidence 346889999999999999998754
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.30 E-value=0.22 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=18.1
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
..+++.|++||||||++...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 578999999999999987654
No 385
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.28 E-value=0.19 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.1
Q ss_pred cCCEEEEEcCCCChhhchhhH
Q 004850 80 ANQVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~ 100 (727)
.+.+++|.|++||||||+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456899999999999998764
No 386
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.27 E-value=0.22 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.4
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..++++|++||||||+....
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35778999999999999987654
No 387
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.12 E-value=0.2 Score=48.49 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.|..++|.|+|||||||+.....-.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4677899999999999998776543
No 388
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.03 E-value=0.3 Score=51.30 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=21.7
Q ss_pred HHHhhhcCCE--EEEEcCCCChhhchhhHH
Q 004850 74 FLQVLKANQV--IILVGETGSGKTTQIPQF 101 (727)
Q Consensus 74 ii~~i~~g~~--vii~g~TGSGKTt~~~~~ 101 (727)
+...+..|+. +++.||+|+||||++..+
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 3344566766 899999999999988754
No 389
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.92 E-value=0.21 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..++|.|||||||||+.....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578899999999999877653
No 390
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.86 E-value=0.2 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.4
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..++|+|||||||||+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 4568999999999999987654
No 391
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.73 E-value=0.21 Score=47.36 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..+++.|++||||||+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987653
No 392
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.72 E-value=1.1 Score=56.59 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcC
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
+..|+.++|.|++|+||||+..++..+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 5678999999999999999998876643
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.67 E-value=0.24 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.7
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..+..+++.|++||||||+.....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999987543
No 394
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.62 E-value=1.1 Score=56.72 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=24.8
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGV 106 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~ 106 (727)
+..|..+.|.|++||||||+..+++.+..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999998877654
No 395
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.48 E-value=0.52 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
..-+++.||+|||||++...+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999987654
No 396
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.37 E-value=0.25 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.5
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..+++++|+|||||||||++-.+.
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~ 47 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAIS 47 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999987554
No 397
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.26 E-value=0.24 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..+++.|+.||||||+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4668899999999999998754
No 398
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.25 E-value=0.25 Score=47.30 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.4
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5789999999999987754
No 399
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.13 E-value=0.23 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.2
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..+++.|++||||||+.....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35688999999999999987654
No 400
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.11 E-value=0.25 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.713 Sum_probs=16.6
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
++++.||+||||+|+...+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999987543
No 401
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.91 E-value=0.31 Score=46.00 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=17.7
Q ss_pred CEEEEEcCCCChhhchhhHHH
Q 004850 82 QVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~l 102 (727)
.++++.|++||||||++...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999887543
No 402
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.90 E-value=0.28 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..+++.|+.||||||+....
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHH
Confidence 45788999999999999987643
No 403
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=86.77 E-value=0.21 Score=52.63 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=17.5
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
....+|+|||||||||++--+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357889999999999988643
No 404
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.75 E-value=0.26 Score=49.32 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.2
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
-+++.||+||||||++..+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38899999999999987654
No 405
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.75 E-value=0.3 Score=47.40 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=16.6
Q ss_pred CEEEEEcCCCChhhchhhH
Q 004850 82 QVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~ 100 (727)
...+|+|+|||||||++--
T Consensus 24 ~~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 4788999999999998763
No 406
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.72 E-value=1.5 Score=56.42 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHH--hhhcCCEEEEEcCCCChhhchhhHHHhcCc
Q 004850 72 EEFLQ--VLKANQVIILVGETGSGKTTQIPQFVLEGV 106 (727)
Q Consensus 72 ~~ii~--~i~~g~~vii~g~TGSGKTt~~~~~ll~~~ 106 (727)
..++. -+..|+++++.|++||||||+..+++.++.
T Consensus 1070 d~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1070 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp HHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45553 577999999999999999999999988765
No 407
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.69 E-value=0.27 Score=46.49 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.4
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987754
No 408
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=86.65 E-value=0.25 Score=52.59 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=28.3
Q ss_pred ecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCccccCcccCCeEEEEcCCC
Q 004850 318 LYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGF 372 (727)
Q Consensus 318 lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~gitIp~V~~VId~g~ 372 (727)
..++|++..|..+++....- ..-+|++|...+ ..+-.++|+-|-
T Consensus 301 p~s~LD~~~~~~l~~~l~~~-------~qt~i~~th~~~----~~~~i~~l~~G~ 344 (359)
T 2o5v_A 301 FTAELDPHRRQYLLDLAASV-------PQAIVTGTELAP----GAALTLRAQAGR 344 (359)
T ss_dssp GGGCCCHHHHHHHHHHHHHS-------SEEEEEESSCCT----TCSEEEEEETTE
T ss_pred ccccCCHHHHHHHHHHHHhc-------CcEEEEEEeccc----cCCEEEEEECCE
Confidence 46788988888877665432 246778887432 445566666664
No 409
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.60 E-value=0.67 Score=54.47 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=37.0
Q ss_pred cCCCCCCCCChHHHHHHHHhcCCCchHHHHHHHH-hhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 43 INRWNGKPYSQRYYEILEKRKSLPVWQQKEEFLQ-VLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 43 ~~~f~~~~l~~~~~~~l~~~~~lp~~~~q~~ii~-~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
.-+|++.+.-...++.+++.-.+|....+. +-. -+....-+++.||+|||||++...+.-
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~-f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDK-FLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGG-GSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHH-HHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 346888877777777776665555432110 000 122334578999999999987765543
No 410
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.51 E-value=0.28 Score=45.89 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=19.9
Q ss_pred cCCEEEEEcCCCChhhchhhHHHh
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
.+..++++|++|+||||++..+.-
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999988753
No 411
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.45 E-value=0.26 Score=45.82 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.4
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
++++|.|..||||||+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999987643
No 412
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.41 E-value=0.33 Score=47.47 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=18.5
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..+++.|++||||||+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999987754
No 413
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.41 E-value=0.27 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=14.4
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..+++.|.+||||||+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999998764
No 414
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.41 E-value=0.41 Score=47.79 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=19.5
Q ss_pred hcCCEEEEEcCCCChhhchhhHHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
..+-.+++.|++||||||+.....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 355678999999999999987653
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.36 E-value=0.19 Score=48.74 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=16.6
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5789999999999998754
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.29 E-value=0.32 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..+++.|+.||||||+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 35788999999999999987754
No 417
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.05 E-value=0.34 Score=44.80 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++++|++|+||||++..+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998875
No 418
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.04 E-value=0.31 Score=46.35 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=16.4
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|+.||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998754
No 419
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.92 E-value=2 Score=55.11 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.0
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhcCc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLEGV 106 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~~~ 106 (727)
+..|..+.|.|++|+||||+..++..+..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998876543
No 420
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.56 E-value=0.34 Score=47.08 Aligned_cols=19 Identities=47% Similarity=0.674 Sum_probs=16.2
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999997754
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.50 E-value=0.33 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...++|+|||||||||+.....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3478899999999999876543
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=85.42 E-value=0.33 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..++|+|++||||||++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999998655
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.41 E-value=0.33 Score=47.33 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+.+++|.|++||||||+....
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987754
No 424
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.35 E-value=0.27 Score=49.41 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..++++|++||||||+....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999987754
No 425
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.20 E-value=0.32 Score=47.65 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..+++.|++||||||+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999987754
No 426
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.20 E-value=1.4 Score=52.45 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=20.8
Q ss_pred HHHHHhhhc--CCEEEEEcCCCChhhchhhHH
Q 004850 72 EEFLQVLKA--NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 72 ~~ii~~i~~--g~~vii~g~TGSGKTt~~~~~ 101 (727)
..++..+.. ...++++||+|+|||+++..+
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHH
Confidence 334444433 346889999999999987644
No 427
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.18 E-value=0.41 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=18.1
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+..+++.|++||||||+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999987654
No 428
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.16 E-value=0.35 Score=49.24 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.1
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
-+++.||+||||||++..+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHH
Confidence 38899999999999987654
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.87 E-value=0.37 Score=45.49 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=17.1
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++.|++||||||+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999987654
No 430
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.86 E-value=0.59 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+++.||+||||||++..+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3468899999999999887553
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.83 E-value=0.38 Score=46.73 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.3
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.++++|++||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999998764
No 432
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.63 E-value=0.4 Score=45.40 Aligned_cols=19 Identities=47% Similarity=0.656 Sum_probs=16.3
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|+.||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987654
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.58 E-value=0.36 Score=45.48 Aligned_cols=20 Identities=50% Similarity=0.845 Sum_probs=17.5
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++++|++|+||||++..+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999999998765
No 434
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.49 E-value=0.36 Score=45.19 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.2
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.++|.|++||||||+....
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5788999999999987654
No 435
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.27 E-value=0.45 Score=44.66 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.0
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++++|++|+||||++..+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998875
No 436
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.24 E-value=1.2 Score=47.24 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=18.8
Q ss_pred cCCEEEEEcCCCChhhchhhHHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~l 102 (727)
.+..+++.||+|||||++...+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999876543
No 437
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.24 E-value=0.51 Score=49.25 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=26.6
Q ss_pred hHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHH
Q 004850 68 WQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 68 ~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
......++..+..+..+++.||+|+|||++...+
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHH
Confidence 3444556666777889999999999999988754
No 438
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.18 E-value=0.43 Score=45.82 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
...+++.|++||||||+.....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999976543
No 439
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.17 E-value=1.2 Score=45.36 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
+..+++.||+|+|||++...+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5678899999999999887543
No 440
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=84.12 E-value=0.33 Score=51.86 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=17.0
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
...+|+|+||||||+++--+
T Consensus 26 gl~vi~G~NGaGKT~ileAI 45 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAV 45 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57889999999999987643
No 441
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.08 E-value=0.61 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..+++.||+|+|||+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 689999999999999987644
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.08 E-value=0.47 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.6
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..++|+|++||||||+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 46778999999999999987654
No 443
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.99 E-value=0.6 Score=46.94 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=20.5
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
...+..+++.|++|+|||++...+.-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 34567888999999999998876543
No 444
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.93 E-value=0.42 Score=48.25 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..++++|.+||||||+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 457899999999999987654
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.91 E-value=0.4 Score=44.53 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.7
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++.|++||||||+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36889999999999987653
No 446
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.84 E-value=0.45 Score=50.04 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=17.0
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
.+++|.|||||||||+....
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 47899999999999987654
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.79 E-value=0.47 Score=43.87 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=16.2
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999987653
No 448
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.78 E-value=0.36 Score=50.00 Aligned_cols=19 Identities=42% Similarity=0.777 Sum_probs=16.6
Q ss_pred EEEEcCCCChhhchhhHHH
Q 004850 84 IILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 84 vii~g~TGSGKTt~~~~~l 102 (727)
++++|++|+||||++..+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEETTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5889999999999998754
No 449
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=83.73 E-value=0.45 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCChhhchhhHHH
Q 004850 81 NQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~l 102 (727)
..+++|.|++||||||+.....
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999877543
No 450
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=83.73 E-value=0.5 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.8
Q ss_pred hhhcCCEEEEEcCCCChhhchhhHHH
Q 004850 77 VLKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 77 ~i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
....+..++++|++|+||||++....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHH
Confidence 35678899999999999999988654
No 451
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.52 E-value=0.47 Score=46.58 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.3
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999998754
No 452
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.42 E-value=0.56 Score=48.19 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.3
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..+++.||+|+|||++...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 47899999999999988754
No 453
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.38 E-value=0.41 Score=45.11 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=16.6
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..++++|++||||||+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45889999999999987644
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.29 E-value=0.5 Score=42.85 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..+.-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788999999999999887644
No 455
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.24 E-value=0.55 Score=45.83 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=17.7
Q ss_pred CCEEEEEcCCCChhhchhhHH
Q 004850 81 NQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 81 g~~vii~g~TGSGKTt~~~~~ 101 (727)
+..+++.|++||||||+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987654
No 456
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.12 E-value=0.48 Score=46.02 Aligned_cols=19 Identities=42% Similarity=0.485 Sum_probs=16.2
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
.+++.|++||||||+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999987754
No 457
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=83.10 E-value=0.53 Score=50.67 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=24.0
Q ss_pred HhhhcCCEEEEEcCCCChhhchhhHHHh
Q 004850 76 QVLKANQVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 76 ~~i~~g~~vii~g~TGSGKTt~~~~~ll 103 (727)
..+..|..++++|++|+||||++..+.-
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3566889999999999999999987664
No 458
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.02 E-value=0.59 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..+++.|+.||||||+....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998643
No 459
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.88 E-value=0.52 Score=43.02 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=18.7
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..++-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999887643
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.82 E-value=0.51 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=16.8
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
..++|+|||||||||+....
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47889999999999987654
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.73 E-value=0.56 Score=42.49 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.8
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..++-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4788999999999999887644
No 462
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.70 E-value=0.51 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..|..+++.|+.||||||+....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHH
Confidence 45788999999999999998754
No 463
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.65 E-value=0.51 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=17.2
Q ss_pred hhcCCEEEEEcCCCChhhchhhHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
...|..+++.|+.||||||+....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999998743
No 464
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.64 E-value=0.6 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=18.9
Q ss_pred hcCCEEEEEcCCCChhhchhhHH
Q 004850 79 KANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 79 ~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..+..+++.|++||||||+....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34568999999999999987754
No 465
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=82.39 E-value=0.7 Score=53.02 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=25.9
Q ss_pred CchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhH
Q 004850 66 PVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 66 p~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~ 100 (727)
.+++.|.+++... +..++|.|+.|||||+.+..
T Consensus 9 ~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 9 SLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp TCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHH
T ss_pred cCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHH
Confidence 4678888888743 45678899999999998763
No 466
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.31 E-value=0.51 Score=51.25 Aligned_cols=19 Identities=42% Similarity=0.777 Sum_probs=16.7
Q ss_pred EEEEcCCCChhhchhhHHH
Q 004850 84 IILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 84 vii~g~TGSGKTt~~~~~l 102 (727)
++|+|++|+||||++..+.
T Consensus 34 I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5899999999999988764
No 467
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.25 E-value=0.58 Score=42.51 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47889999999999998876543
No 468
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.02 E-value=1.2 Score=43.27 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCchHH--HHHHHHhhhcCCEEEEEcCCCChhhchhhH
Q 004850 53 QRYYEILEKRKSLPVWQQ--KEEFLQVLKANQVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 53 ~~~~~~l~~~~~lp~~~~--q~~ii~~i~~g~~vii~g~TGSGKTt~~~~ 100 (727)
..+.+.+...+.-++.-. -+.++..+.....+++.||+|+||||....
T Consensus 28 ~~I~~~l~yq~~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 28 RPIVQFLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 456677776665443321 122222232334789999999999998754
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=82.02 E-value=0.63 Score=43.87 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.5
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
..-.++++|++|+||||++..+.-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3347889999999999999887644
No 470
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=81.88 E-value=0.6 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.705 Sum_probs=19.3
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57889999999999998876543
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.73 E-value=0.59 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.+..++|+|+|||||||++...+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5677899999999999998765543
No 472
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=81.70 E-value=0.61 Score=42.39 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=19.2
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47889999999999998876543
No 473
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=81.67 E-value=1.3 Score=51.14 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=39.9
Q ss_pred cccCCCCCCCC-ChHHHHHHHH--hcCCCc--hHHHHHHHHhh---hcCCEEEEEcCCCChhhchhhH
Q 004850 41 SLINRWNGKPY-SQRYYEILEK--RKSLPV--WQQKEEFLQVL---KANQVIILVGETGSGKTTQIPQ 100 (727)
Q Consensus 41 ~~~~~f~~~~l-~~~~~~~l~~--~~~lp~--~~~q~~ii~~i---~~g~~vii~g~TGSGKTt~~~~ 100 (727)
-.+|||..+++ ++...+.... ++.+|| +.+.+.+...+ .+++-++|.|++|||||.....
T Consensus 46 iavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~ 113 (697)
T 1lkx_A 46 ISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKK 113 (697)
T ss_dssp EEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHH
T ss_pred EEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHH
Confidence 34689998874 5665554432 234665 45555554443 4678899999999999987653
No 474
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.62 E-value=0.63 Score=42.58 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.2
Q ss_pred EEEEEcCCCChhhchhhHHHh
Q 004850 83 VIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll 103 (727)
.++++|++|+||||++..++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478899999999999988764
No 475
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.59 E-value=0.66 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.4
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..+++.|+.||||||+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999988753
No 476
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.57 E-value=0.62 Score=42.51 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47889999999999998876544
No 477
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.52 E-value=0.66 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCChhhchhhHHHh
Q 004850 83 VIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll 103 (727)
.++++|++|+||||++..++-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999987663
No 478
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=81.44 E-value=0.61 Score=42.62 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47889999999999998876443
No 479
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.44 E-value=0.7 Score=42.23 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47889999999999998876544
No 480
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.44 E-value=0.51 Score=49.18 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.9
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHHhc
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
+..|+++.|.|++|||||++..++..+
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999988765
No 481
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.43 E-value=0.63 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..+++.||+||||||++..+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998754
No 482
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=81.29 E-value=0.65 Score=42.31 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.7
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..++-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999887654
No 483
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=81.21 E-value=0.72 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.0
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
..-+++|.|++||||||+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3458999999999999988754
No 484
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=81.11 E-value=0.67 Score=42.82 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=19.3
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47889999999999998876543
No 485
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.10 E-value=0.73 Score=45.23 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.|..+++.|+.||||||+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l 25 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNIL 25 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998754
No 486
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=81.08 E-value=6.4 Score=40.90 Aligned_cols=108 Identities=6% Similarity=-0.045 Sum_probs=59.8
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCCCCCCCCcEEEEecCcccc
Q 004850 278 PSGDILVFLTGEEEIEDACRKITKEITNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPSKEGGPPGRKIVVSTNIAET 357 (727)
Q Consensus 278 ~~g~iLVFl~~~~ei~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~~~~~~~~g~~~~~~~~~kvlvaTniAe~ 357 (727)
.+.+||||.......+-+..++.. .++....+-|+....++ +. .+. ...|.+.|.-+.-
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~-k~----~~~-------~~~i~Lltsag~~ 182 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAA-AA----NDF-------SCTVHLFSSEGIN 182 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CC-------SEEEEEEESSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhh-hc----ccC-------CceEEEEECCCCC
Confidence 456899999999988887777764 37889999998544332 21 122 4456666653433
Q ss_pred Ccc-------cCCeEEEEcCCCccceeeccccCccccccccccH-hhHHhhhcccC--CCCCceEEEecchhhhcc
Q 004850 358 SLT-------IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISK-ASAHQRSGRAG--RTQPGKCFRLYTEKSFNN 423 (727)
Q Consensus 358 git-------Ip~V~~VId~g~~k~~~~~~~~~~~~l~~~pis~-~~~~qR~GRaG--R~~~G~~~~L~t~~~~~~ 423 (727)
|+. -.|+..+.|+++ | |.+- -+++.|+-|.| +.++=.+|||.+....+.
T Consensus 183 gin~~~~nl~~aD~VI~~Dsdw------N-----------p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTV------D-----------TSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTC------C-----------TTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CcCcccccCCCCCEEEEECCCC------C-----------CCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 443 234444445554 2 2222 24455666653 346678999999876544
No 487
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=81.07 E-value=0.67 Score=42.42 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47889999999999998876543
No 488
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.03 E-value=0.9 Score=50.52 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=29.9
Q ss_pred CCCchHHHHHHHHhhhcCCEEEEEcCCCChhhchhhHH
Q 004850 64 SLPVWQQKEEFLQVLKANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 64 ~lp~~~~q~~ii~~i~~g~~vii~g~TGSGKTt~~~~~ 101 (727)
+.--......++.++..+..+++.||+|+|||++...+
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHH
Confidence 34445555677777888999999999999999987654
No 489
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.93 E-value=0.57 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.9
Q ss_pred cCCEEEEEcCCCChhhchhhHH
Q 004850 80 ANQVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ 101 (727)
.+-+++|+|..||||||.....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 3457889999999999987654
No 490
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=80.89 E-value=0.27 Score=48.71 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=15.6
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
+++|+|||||||||++..+
T Consensus 29 ~~~i~GpnGsGKSTll~~i 47 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAF 47 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4467899999999998744
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=80.82 E-value=0.66 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.9
Q ss_pred CEEEEEcCCCChhhchhhHHHh
Q 004850 82 QVIILVGETGSGKTTQIPQFVL 103 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ll 103 (727)
-.++++|++|+||||++..++-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999987763
No 492
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=80.77 E-value=0.85 Score=42.13 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCChhhchhhHHHhc
Q 004850 80 ANQVIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 80 ~g~~vii~g~TGSGKTt~~~~~ll~ 104 (727)
..-.++++|++|+||||++..+.-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999887643
No 493
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=80.74 E-value=0.67 Score=43.54 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..++-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999887644
No 494
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=80.70 E-value=0.7 Score=42.50 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=17.5
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++++|++|+||||++..+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 47889999999999998765
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.62 E-value=0.69 Score=49.74 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=16.8
Q ss_pred CEEEEEcCCCChhhchhhHH
Q 004850 82 QVIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 82 ~~vii~g~TGSGKTt~~~~~ 101 (727)
.+++|.|||||||||+....
T Consensus 3 ~~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHH
Confidence 46889999999999987654
No 496
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.59 E-value=0.67 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=20.7
Q ss_pred hhcCCEEEEEcCCCChhhchhhHHH
Q 004850 78 LKANQVIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 78 i~~g~~vii~g~TGSGKTt~~~~~l 102 (727)
+.++..++|.|.|||||||++..++
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHH
Confidence 3457789999999999999987654
No 497
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=80.43 E-value=0.72 Score=42.22 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=17.3
Q ss_pred EEEEEcCCCChhhchhhHHH
Q 004850 83 VIILVGETGSGKTTQIPQFV 102 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~l 102 (727)
.++++|++|+||||++..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999998764
No 498
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=80.16 E-value=0.74 Score=41.97 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=19.2
Q ss_pred EEEEEcCCCChhhchhhHHHhcC
Q 004850 83 VIILVGETGSGKTTQIPQFVLEG 105 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~~ 105 (727)
.++++|++|+||||++..++-..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47889999999999998876543
No 499
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.86 E-value=0.75 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=18.9
Q ss_pred EEEEEcCCCChhhchhhHHHhc
Q 004850 83 VIILVGETGSGKTTQIPQFVLE 104 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ll~ 104 (727)
.++++|++|+||||++..++-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999887654
No 500
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=79.78 E-value=0.78 Score=43.93 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=16.6
Q ss_pred EEEEEcCCCChhhchhhHH
Q 004850 83 VIILVGETGSGKTTQIPQF 101 (727)
Q Consensus 83 ~vii~g~TGSGKTt~~~~~ 101 (727)
+++|.|++||||||+....
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999987654
Done!