Query 004851
Match_columns 727
No_of_seqs 1668 out of 3114
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-37 9.2E-42 327.2 41.7 386 225-699 3-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.8E-36 1.3E-40 318.3 39.4 368 270-717 4-371 (388)
3 2xpi_A Anaphase-promoting comp 100.0 6.4E-35 2.2E-39 327.6 37.6 448 192-717 89-582 (597)
4 2xpi_A Anaphase-promoting comp 100.0 9E-33 3.1E-37 310.1 40.2 428 219-717 82-548 (597)
5 3fp2_A TPR repeat-containing p 100.0 2.8E-32 9.5E-37 301.9 36.3 421 219-717 23-494 (537)
6 2gw1_A Mitochondrial precursor 100.0 1.7E-31 5.8E-36 293.7 42.2 403 219-690 4-489 (514)
7 2gw1_A Mitochondrial precursor 100.0 1.8E-32 6.2E-37 301.5 33.3 393 263-717 4-481 (514)
8 4g1t_A Interferon-induced prot 100.0 6.5E-31 2.2E-35 285.9 32.6 407 238-717 27-462 (472)
9 2y4t_A DNAJ homolog subfamily 100.0 8.9E-30 3E-34 275.0 36.8 400 209-704 14-445 (450)
10 4g1t_A Interferon-induced prot 100.0 7.4E-31 2.5E-35 285.4 27.1 397 216-691 46-471 (472)
11 2y4t_A DNAJ homolog subfamily 100.0 3.6E-29 1.2E-33 270.2 39.6 351 307-717 25-413 (450)
12 3fp2_A TPR repeat-containing p 100.0 1.1E-29 3.7E-34 281.0 35.1 418 190-672 28-492 (537)
13 3ieg_A DNAJ homolog subfamily 100.0 2.3E-28 7.8E-33 255.0 39.5 333 308-699 3-355 (359)
14 3sf4_A G-protein-signaling mod 100.0 2.9E-28 1E-32 259.0 39.1 344 308-668 9-373 (406)
15 3sf4_A G-protein-signaling mod 100.0 8.3E-28 2.8E-32 255.5 42.1 352 347-714 6-377 (406)
16 3ieg_A DNAJ homolog subfamily 100.0 1.4E-27 4.7E-32 249.1 36.8 336 265-656 3-354 (359)
17 2xm6_A Protein corresponding t 100.0 2.3E-26 8E-31 250.8 42.2 375 218-698 36-454 (490)
18 4a1s_A PINS, partner of inscut 100.0 2E-26 7E-31 245.5 38.3 315 262-591 45-376 (411)
19 4a1s_A PINS, partner of inscut 100.0 2.7E-26 9.2E-31 244.5 39.1 313 347-673 45-374 (411)
20 3ro2_A PINS homolog, G-protein 100.0 5.8E-26 2E-30 234.2 39.0 312 265-591 5-336 (338)
21 2xm6_A Protein corresponding t 100.0 2.5E-25 8.5E-30 242.7 42.3 351 265-715 39-433 (490)
22 3ro2_A PINS homolog, G-protein 100.0 2.4E-25 8.3E-30 229.5 39.7 309 309-632 6-335 (338)
23 1fch_A Peroxisomal targeting s 100.0 6.7E-27 2.3E-31 245.1 24.9 317 273-635 33-365 (368)
24 3hym_B Cell division cycle pro 100.0 2.1E-26 7.1E-31 237.2 26.6 301 347-701 19-322 (330)
25 1fch_A Peroxisomal targeting s 99.9 1.5E-26 5.2E-31 242.4 24.1 318 359-717 34-362 (368)
26 3hym_B Cell division cycle pro 99.9 1.2E-25 4E-30 231.6 28.6 295 310-659 24-322 (330)
27 3ulq_A Response regulator aspa 99.9 1.2E-23 4.2E-28 221.6 40.4 349 309-677 13-374 (383)
28 3ulq_A Response regulator aspa 99.9 1.3E-23 4.4E-28 221.5 39.3 354 218-593 9-374 (383)
29 4eqf_A PEX5-related protein; a 99.9 2.1E-25 7.2E-30 233.6 24.5 305 286-635 48-362 (365)
30 4eqf_A PEX5-related protein; a 99.9 1.9E-24 6.5E-29 226.3 29.1 285 393-713 66-355 (365)
31 3cv0_A Peroxisome targeting si 99.9 9.3E-24 3.2E-28 217.0 26.8 282 393-721 22-323 (327)
32 3q15_A PSP28, response regulat 99.9 6.5E-22 2.2E-26 207.9 40.3 337 231-591 22-369 (378)
33 3q15_A PSP28, response regulat 99.9 2E-22 7E-27 211.8 36.3 336 317-676 21-370 (378)
34 3cv0_A Peroxisome targeting si 99.9 1.9E-23 6.4E-28 214.7 26.1 283 307-635 20-321 (327)
35 2ooe_A Cleavage stimulation fa 99.9 2.7E-22 9.1E-27 221.0 35.8 425 215-717 7-495 (530)
36 3nf1_A KLC 1, kinesin light ch 99.9 1.8E-22 6.3E-27 205.6 30.0 282 426-717 21-310 (311)
37 1hz4_A MALT regulatory protein 99.9 4.5E-21 1.5E-25 201.2 39.9 312 349-674 13-325 (373)
38 3nf1_A KLC 1, kinesin light ch 99.9 8.4E-22 2.9E-26 200.7 31.9 279 342-629 19-307 (311)
39 3uq3_A Heat shock protein STI1 99.9 1.1E-21 3.9E-26 193.8 30.3 237 430-717 3-239 (258)
40 3u4t_A TPR repeat-containing p 99.9 2.2E-22 7.5E-27 201.0 23.2 263 351-656 4-269 (272)
41 2h6f_A Protein farnesyltransfe 99.9 1.2E-22 4E-27 211.1 21.3 241 427-717 92-351 (382)
42 2h6f_A Protein farnesyltransfe 99.9 3.5E-22 1.2E-26 207.5 24.2 253 390-697 95-366 (382)
43 3u4t_A TPR repeat-containing p 99.9 1.4E-22 4.8E-27 202.4 20.5 247 433-717 4-253 (272)
44 3uq3_A Heat shock protein STI1 99.9 5.1E-21 1.7E-25 189.1 30.5 254 347-651 2-256 (258)
45 1hz4_A MALT regulatory protein 99.9 3E-20 1E-24 194.9 38.1 313 264-592 13-327 (373)
46 3e4b_A ALGK; tetratricopeptide 99.9 1.6E-22 5.4E-27 217.1 20.5 385 225-717 7-424 (452)
47 3edt_B KLC 2, kinesin light ch 99.9 3.9E-21 1.3E-25 192.7 26.0 268 319-587 12-281 (283)
48 2pl2_A Hypothetical conserved 99.9 1.4E-21 4.7E-26 187.7 20.0 197 432-669 5-212 (217)
49 3e4b_A ALGK; tetratricopeptide 99.9 4.7E-22 1.6E-26 213.3 18.2 352 269-716 7-389 (452)
50 2ooe_A Cleavage stimulation fa 99.9 4.8E-20 1.6E-24 202.9 34.7 387 262-717 10-457 (530)
51 3edt_B KLC 2, kinesin light ch 99.9 1.3E-20 4.5E-25 188.8 27.5 269 442-714 11-281 (283)
52 2pl2_A Hypothetical conserved 99.9 1.9E-21 6.5E-26 186.8 18.9 200 471-712 2-212 (217)
53 3mkr_A Coatomer subunit epsilo 99.9 4.4E-20 1.5E-24 185.5 25.8 278 358-704 7-285 (291)
54 3mkr_A Coatomer subunit epsilo 99.9 2E-19 6.8E-24 180.7 27.9 260 400-717 7-267 (291)
55 1xi4_A Clathrin heavy chain; a 99.8 4.7E-18 1.6E-22 192.6 39.9 366 226-709 990-1379(1630)
56 1qqe_A Vesicular transport pro 99.8 3.4E-19 1.2E-23 179.6 25.4 250 365-652 32-284 (292)
57 1ouv_A Conserved hypothetical 99.8 8.9E-19 3E-23 174.9 28.2 226 431-717 5-254 (273)
58 1ouv_A Conserved hypothetical 99.8 8.9E-19 3E-23 174.9 27.1 226 217-503 2-251 (273)
59 2q7f_A YRRB protein; TPR, prot 99.8 9.6E-20 3.3E-24 178.2 19.3 222 429-698 20-241 (243)
60 1qqe_A Vesicular transport pro 99.8 4.8E-19 1.6E-23 178.5 23.7 250 407-694 32-284 (292)
61 1xi4_A Clathrin heavy chain; a 99.8 3.9E-17 1.3E-21 185.3 40.1 353 227-698 1055-1415(1630)
62 3vtx_A MAMA; tetratricopeptide 99.8 6.7E-19 2.3E-23 164.2 21.6 169 517-717 5-173 (184)
63 1xnf_A Lipoprotein NLPI; TPR, 99.8 2E-19 6.9E-24 179.6 19.2 258 399-708 12-269 (275)
64 2ho1_A Type 4 fimbrial biogene 99.8 1.7E-18 5.8E-23 170.5 24.9 209 470-717 32-241 (252)
65 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.4E-19 1.9E-23 176.4 20.8 259 271-581 11-269 (275)
66 2ho1_A Type 4 fimbrial biogene 99.8 3.4E-18 1.2E-22 168.3 25.4 206 428-671 32-238 (252)
67 2vq2_A PILW, putative fimbrial 99.8 4.5E-18 1.5E-22 163.9 25.6 209 470-717 4-214 (225)
68 2vq2_A PILW, putative fimbrial 99.8 1.2E-17 4.1E-22 161.0 28.3 207 427-671 3-211 (225)
69 2q7f_A YRRB protein; TPR, prot 99.8 6.3E-19 2.2E-23 172.4 19.5 205 472-717 21-225 (243)
70 4abn_A Tetratricopeptide repea 99.8 6.4E-19 2.2E-23 190.2 19.9 217 452-711 81-318 (474)
71 3vtx_A MAMA; tetratricopeptide 99.8 3.4E-18 1.2E-22 159.4 22.1 167 473-671 4-170 (184)
72 4abn_A Tetratricopeptide repea 99.8 1.2E-18 4.2E-23 187.9 21.3 204 427-668 97-318 (474)
73 2ifu_A Gamma-SNAP; membrane fu 99.8 1.8E-17 6E-22 168.3 28.7 245 405-663 4-253 (307)
74 4gyw_A UDP-N-acetylglucosamine 99.8 1.6E-18 5.3E-23 194.2 21.8 176 513-720 5-181 (723)
75 2ifu_A Gamma-SNAP; membrane fu 99.8 2E-17 6.9E-22 167.9 26.3 248 362-621 3-253 (307)
76 4gyw_A UDP-N-acetylglucosamine 99.8 7.5E-18 2.6E-22 188.7 21.8 174 470-675 5-178 (723)
77 3qky_A Outer membrane assembly 99.8 9.5E-17 3.2E-21 158.9 23.8 224 428-704 11-252 (261)
78 4i17_A Hypothetical protein; T 99.8 1.9E-17 6.5E-22 160.3 17.9 188 433-653 8-225 (228)
79 2ond_A Cleavage stimulation fa 99.7 2E-16 6.9E-21 160.7 23.6 224 449-717 33-273 (308)
80 4i17_A Hypothetical protein; T 99.7 7.3E-17 2.5E-21 156.1 18.6 190 474-695 7-225 (228)
81 3qky_A Outer membrane assembly 99.7 2.8E-16 9.5E-21 155.5 21.7 223 262-537 12-252 (261)
82 4b4t_Q 26S proteasome regulato 99.7 9.8E-15 3.3E-19 156.1 31.6 241 352-597 6-255 (434)
83 4e6h_A MRNA 3'-END-processing 99.7 3.8E-13 1.3E-17 148.8 44.2 446 209-717 54-573 (679)
84 3as5_A MAMA; tetratricopeptide 99.7 9.6E-16 3.3E-20 142.4 19.1 172 514-717 5-176 (186)
85 2ond_A Cleavage stimulation fa 99.7 2.9E-15 1E-19 152.1 24.2 227 282-551 33-275 (308)
86 1b89_A Protein (clathrin heavy 99.7 1E-17 3.4E-22 171.6 5.3 340 273-717 11-360 (449)
87 1b89_A Protein (clathrin heavy 99.7 3.5E-17 1.2E-21 167.6 8.0 331 233-669 15-353 (449)
88 3n71_A Histone lysine methyltr 99.7 2.1E-15 7.2E-20 160.5 20.8 151 564-715 315-465 (490)
89 3gw4_A Uncharacterized protein 99.7 9.5E-15 3.2E-19 138.1 22.8 194 443-651 3-196 (203)
90 2pzi_A Probable serine/threoni 99.7 1.2E-15 4E-20 172.1 18.3 207 433-675 395-602 (681)
91 2qfc_A PLCR protein; TPR, HTH, 99.7 2.7E-14 9.1E-19 143.8 25.8 198 471-675 72-270 (293)
92 3gw4_A Uncharacterized protein 99.7 2.4E-14 8.3E-19 135.3 24.0 194 318-526 2-196 (203)
93 4ga2_A E3 SUMO-protein ligase 99.7 5.2E-16 1.8E-20 138.8 11.5 147 522-699 2-149 (150)
94 3u3w_A Transcriptional activat 99.6 1.7E-14 5.8E-19 145.3 23.6 197 472-675 73-270 (293)
95 3urz_A Uncharacterized protein 99.6 3.6E-15 1.2E-19 141.7 17.3 168 517-717 4-189 (208)
96 3urz_A Uncharacterized protein 99.6 6E-15 2.1E-19 140.2 18.7 164 433-629 5-186 (208)
97 2qfc_A PLCR protein; TPR, HTH, 99.6 1.2E-14 4.1E-19 146.4 21.9 195 394-593 77-272 (293)
98 3u3w_A Transcriptional activat 99.6 1.5E-14 5.1E-19 145.7 22.3 194 393-594 76-273 (293)
99 2pzi_A Probable serine/threoni 99.6 6.9E-16 2.3E-20 174.0 13.8 210 471-717 391-601 (681)
100 3as5_A MAMA; tetratricopeptide 99.6 9.7E-15 3.3E-19 135.5 18.7 171 470-672 4-174 (186)
101 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.7E-14 5.7E-19 139.1 20.0 181 517-717 4-216 (225)
102 4b4t_Q 26S proteasome regulato 99.6 1.1E-13 3.9E-18 147.8 28.3 235 311-551 7-250 (434)
103 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.1E-13 7.3E-18 131.2 25.6 190 433-670 5-212 (225)
104 4ga2_A E3 SUMO-protein ligase 99.6 2.1E-15 7.2E-20 134.9 10.0 147 479-657 2-149 (150)
105 3dra_A Protein farnesyltransfe 99.6 1.7E-13 5.9E-18 136.2 22.5 228 444-717 45-291 (306)
106 3n71_A Histone lysine methyltr 99.6 8.7E-14 3E-18 148.1 21.0 153 520-672 312-465 (490)
107 3ro3_A PINS homolog, G-protein 99.6 2.1E-13 7.1E-18 123.3 20.6 158 427-590 4-161 (164)
108 3ro3_A PINS homolog, G-protein 99.6 4.8E-13 1.7E-17 120.8 21.3 157 389-550 6-162 (164)
109 2r5s_A Uncharacterized protein 99.5 8.1E-14 2.8E-18 128.5 14.7 170 217-420 2-172 (176)
110 4gco_A Protein STI-1; structur 99.5 1.2E-13 4.1E-18 119.1 14.8 117 554-694 9-125 (126)
111 4gco_A Protein STI-1; structur 99.5 2E-13 6.9E-18 117.7 14.5 105 596-717 9-113 (126)
112 3qou_A Protein YBBN; thioredox 99.5 2.2E-13 7.7E-18 136.3 16.9 167 516-714 116-284 (287)
113 2r5s_A Uncharacterized protein 99.5 7.7E-14 2.6E-18 128.6 12.3 164 518-714 7-173 (176)
114 3dra_A Protein farnesyltransfe 99.5 2E-12 7E-17 128.5 23.1 238 405-692 46-301 (306)
115 3qou_A Protein YBBN; thioredox 99.5 4.6E-13 1.6E-17 134.0 18.0 170 218-420 114-283 (287)
116 4e6h_A MRNA 3'-END-processing 99.5 6.1E-11 2.1E-15 131.2 36.4 412 239-716 49-535 (679)
117 3qww_A SET and MYND domain-con 99.5 5.3E-13 1.8E-17 139.7 18.4 122 570-691 310-431 (433)
118 4f3v_A ESX-1 secretion system 99.5 3.4E-13 1.1E-17 130.7 14.9 210 475-717 8-240 (282)
119 3gyz_A Chaperone protein IPGC; 99.5 5.2E-14 1.8E-18 125.1 8.6 105 596-717 32-136 (151)
120 2vsy_A XCC0866; transferase, g 99.5 4E-13 1.4E-17 148.9 17.3 156 530-717 2-160 (568)
121 3qwp_A SET and MYND domain-con 99.5 7.1E-13 2.4E-17 139.2 17.6 131 567-697 296-426 (429)
122 3rjv_A Putative SEL1 repeat pr 99.5 1.8E-12 6.3E-17 123.2 18.7 177 449-671 3-197 (212)
123 3rjv_A Putative SEL1 repeat pr 99.5 8.8E-13 3E-17 125.5 16.1 178 491-717 3-200 (212)
124 4f3v_A ESX-1 secretion system 99.5 4.3E-12 1.5E-16 122.9 20.6 222 221-481 7-248 (282)
125 1p5q_A FKBP52, FK506-binding p 99.4 2.9E-13 9.8E-18 138.8 11.8 166 529-717 125-297 (336)
126 3gyz_A Chaperone protein IPGC; 99.4 3.2E-13 1.1E-17 120.0 9.8 102 554-671 32-133 (151)
127 3dss_A Geranylgeranyl transfer 99.4 2E-11 7E-16 121.9 23.9 226 443-717 40-307 (331)
128 2fo7_A Synthetic consensus TPR 99.4 4.8E-12 1.6E-16 110.1 17.2 134 559-717 2-135 (136)
129 2vsy_A XCC0866; transferase, g 99.4 1.5E-12 5.1E-17 144.3 17.2 165 445-649 2-169 (568)
130 4gcn_A Protein STI-1; structur 99.4 4.7E-12 1.6E-16 109.2 15.3 109 599-717 7-115 (127)
131 1p5q_A FKBP52, FK506-binding p 99.4 2E-12 6.9E-17 132.5 13.4 163 486-673 125-296 (336)
132 4gcn_A Protein STI-1; structur 99.4 6.9E-12 2.4E-16 108.2 14.7 108 471-587 5-112 (127)
133 2vgx_A Chaperone SYCD; alterna 99.4 2E-12 6.8E-17 115.0 11.3 104 597-717 18-121 (148)
134 2vgx_A Chaperone SYCD; alterna 99.4 3.9E-12 1.4E-16 113.0 12.7 123 539-689 9-131 (148)
135 2hr2_A Hypothetical protein; a 99.4 6.6E-12 2.2E-16 109.8 13.5 117 599-717 10-134 (159)
136 1a17_A Serine/threonine protei 99.4 3.1E-11 1.1E-15 109.5 18.3 136 557-717 12-149 (166)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.4 4.4E-12 1.5E-16 120.8 13.0 139 559-717 7-153 (213)
138 3dss_A Geranylgeranyl transfer 99.3 3.6E-10 1.2E-14 112.9 26.7 238 403-694 40-319 (331)
139 2c2l_A CHIP, carboxy terminus 99.3 1.6E-11 5.4E-16 122.4 16.2 194 432-670 4-198 (281)
140 3upv_A Heat shock protein STI1 99.3 3.4E-11 1.2E-15 103.7 16.2 122 557-696 3-124 (126)
141 2fo7_A Synthetic consensus TPR 99.3 4.1E-11 1.4E-15 104.0 16.9 131 433-587 2-132 (136)
142 3q7a_A Farnesyltransferase alp 99.3 3.9E-11 1.3E-15 120.2 18.8 247 429-716 51-334 (349)
143 2fbn_A 70 kDa peptidylprolyl i 99.3 3.4E-12 1.2E-16 120.0 9.8 170 522-714 9-186 (198)
144 3qww_A SET and MYND domain-con 99.3 4.1E-11 1.4E-15 125.4 18.8 122 528-649 309-431 (433)
145 1a17_A Serine/threonine protei 99.3 6.3E-11 2.1E-15 107.4 17.9 141 430-592 11-151 (166)
146 3rkv_A Putative peptidylprolyl 99.3 1.7E-11 6E-16 110.9 13.8 132 556-703 9-151 (162)
147 2c2l_A CHIP, carboxy terminus 99.3 2.7E-12 9.4E-17 127.9 9.1 195 265-503 4-199 (281)
148 2fbn_A 70 kDa peptidylprolyl i 99.3 6.2E-12 2.1E-16 118.2 11.1 166 478-668 8-183 (198)
149 3upv_A Heat shock protein STI1 99.3 3.1E-11 1.1E-15 104.0 14.5 102 599-717 3-104 (126)
150 3qwp_A SET and MYND domain-con 99.3 3.3E-11 1.1E-15 126.5 17.3 131 525-655 295-426 (429)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.8E-12 9.7E-17 137.2 8.9 161 529-712 246-413 (457)
152 2hr2_A Hypothetical protein; a 99.3 8.7E-11 3E-15 102.7 16.6 128 431-560 10-145 (159)
153 2xcb_A PCRH, regulatory protei 99.3 3.8E-11 1.3E-15 105.9 14.3 104 597-717 15-118 (142)
154 3sz7_A HSC70 cochaperone (SGT) 99.3 4.5E-11 1.6E-15 108.4 14.8 104 597-717 8-111 (164)
155 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.7E-11 1.3E-15 114.2 14.7 141 392-549 6-153 (213)
156 2lni_A Stress-induced-phosphop 99.3 6.3E-11 2.2E-15 102.8 14.6 122 554-699 12-133 (133)
157 3q7a_A Farnesyltransferase alp 99.3 1.6E-10 5.4E-15 115.9 19.0 242 265-545 54-330 (349)
158 1hxi_A PEX5, peroxisome target 99.3 2.4E-11 8.3E-16 103.7 11.4 99 602-717 19-117 (121)
159 2vyi_A SGTA protein; chaperone 99.3 1.5E-10 5E-15 99.9 15.9 122 556-701 10-131 (131)
160 3sz7_A HSC70 cochaperone (SGT) 99.3 7.3E-11 2.5E-15 107.0 14.3 104 553-672 6-109 (164)
161 2e2e_A Formate-dependent nitri 99.2 2E-11 6.7E-16 112.4 10.3 125 568-717 20-147 (177)
162 2xcb_A PCRH, regulatory protei 99.2 1.6E-10 5.6E-15 101.8 15.8 108 426-550 12-119 (142)
163 2vyi_A SGTA protein; chaperone 99.2 2.7E-10 9.4E-15 98.2 15.8 124 512-658 7-130 (131)
164 2lni_A Stress-induced-phosphop 99.2 2.1E-10 7.1E-15 99.5 15.0 122 261-407 12-133 (133)
165 3rkv_A Putative peptidylprolyl 99.2 1.8E-10 6.1E-15 104.2 14.9 126 390-532 9-147 (162)
166 3q49_B STIP1 homology and U bo 99.2 1.2E-10 4.2E-15 101.8 13.4 102 599-717 8-109 (137)
167 1na0_A Designed protein CTPR3; 99.2 6.3E-10 2.2E-14 94.9 16.4 118 557-698 8-125 (125)
168 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 7.4E-11 2.5E-15 126.2 12.1 160 200-377 247-413 (457)
169 2e2e_A Formate-dependent nitri 99.2 8.5E-11 2.9E-15 108.1 10.7 122 527-671 20-144 (177)
170 3q49_B STIP1 homology and U bo 99.2 3.4E-10 1.2E-14 98.9 13.5 102 557-674 8-109 (137)
171 3mv2_B Coatomer subunit epsilo 99.2 1.9E-09 6.5E-14 105.8 19.7 259 400-717 21-285 (310)
172 1ihg_A Cyclophilin 40; ppiase 99.2 2E-10 6.8E-15 118.9 13.3 130 559-704 224-361 (370)
173 1wao_1 Serine/threonine protei 99.1 1.3E-11 4.5E-16 132.6 4.2 177 515-714 4-197 (477)
174 3mv2_B Coatomer subunit epsilo 99.1 2.4E-09 8.2E-14 105.1 19.0 263 359-684 22-290 (310)
175 1elw_A TPR1-domain of HOP; HOP 99.1 9.5E-10 3.3E-14 92.8 14.2 113 558-694 4-116 (118)
176 1na0_A Designed protein CTPR3; 99.1 1.6E-09 5.5E-14 92.4 15.6 118 516-656 8-125 (125)
177 2xev_A YBGF; tetratricopeptide 99.1 1.6E-09 5.5E-14 93.3 15.5 99 560-671 4-105 (129)
178 1hxi_A PEX5, peroxisome target 99.1 4.8E-10 1.6E-14 95.6 11.8 100 434-550 19-118 (121)
179 2if4_A ATFKBP42; FKBP-like, al 99.1 1.1E-10 3.6E-15 119.6 8.7 142 559-717 180-331 (338)
180 2xev_A YBGF; tetratricopeptide 99.1 6.2E-10 2.1E-14 96.0 12.0 105 602-717 4-108 (129)
181 1elw_A TPR1-domain of HOP; HOP 99.1 1.2E-09 4.2E-14 92.0 13.4 101 600-717 4-104 (118)
182 1ihg_A Cyclophilin 40; ppiase 99.1 1.1E-09 3.9E-14 113.1 15.6 130 393-539 224-363 (370)
183 1wao_1 Serine/threonine protei 99.1 1.8E-11 6.2E-16 131.4 2.1 134 559-717 7-153 (477)
184 1elr_A TPR2A-domain of HOP; HO 99.1 1.5E-09 5.3E-14 93.4 13.7 123 558-698 4-126 (131)
185 2uy1_A Cleavage stimulation fa 99.1 1E-07 3.5E-12 102.3 30.4 372 235-714 8-413 (493)
186 2dba_A Smooth muscle cell asso 99.1 1.7E-09 5.9E-14 95.6 13.5 119 556-695 26-144 (148)
187 1elr_A TPR2A-domain of HOP; HO 99.1 2E-09 6.9E-14 92.7 13.3 109 599-717 3-111 (131)
188 1dce_A Protein (RAB geranylger 99.0 2.3E-09 7.9E-14 117.0 16.3 177 486-702 40-244 (567)
189 2dba_A Smooth muscle cell asso 99.0 2.1E-09 7.1E-14 95.0 12.6 102 599-717 27-131 (148)
190 2kck_A TPR repeat; tetratricop 99.0 6.2E-10 2.1E-14 93.0 8.4 101 600-717 6-109 (112)
191 1dce_A Protein (RAB geranylger 99.0 2.9E-09 1E-13 116.2 15.9 177 444-660 40-244 (567)
192 3k9i_A BH0479 protein; putativ 99.0 1E-09 3.4E-14 93.0 7.8 92 612-717 2-93 (117)
193 3k9i_A BH0479 protein; putativ 99.0 1.7E-09 5.6E-14 91.6 9.2 90 570-672 2-91 (117)
194 1zu2_A Mitochondrial import re 99.0 8.4E-10 2.9E-14 96.2 7.3 89 612-717 14-123 (158)
195 2if4_A ATFKBP42; FKBP-like, al 99.0 1.1E-09 3.8E-14 112.0 9.4 132 433-588 180-329 (338)
196 2kck_A TPR repeat; tetratricop 98.9 1.9E-09 6.5E-14 90.0 5.7 102 432-548 6-108 (112)
197 1zu2_A Mitochondrial import re 98.8 6.6E-09 2.3E-13 90.5 8.4 87 569-671 13-120 (158)
198 1na3_A Designed protein CTPR2; 98.8 3.1E-08 1E-12 79.1 11.9 85 598-698 7-91 (91)
199 2uy1_A Cleavage stimulation fa 98.8 1.1E-06 3.7E-11 94.3 27.5 343 277-711 6-380 (493)
200 2l6j_A TPR repeat-containing p 98.8 3.4E-09 1.1E-13 88.5 5.3 93 600-709 4-102 (111)
201 2kat_A Uncharacterized protein 98.7 4.4E-08 1.5E-12 82.4 10.2 83 618-717 3-85 (115)
202 2kat_A Uncharacterized protein 98.7 9.4E-08 3.2E-12 80.3 11.8 87 282-385 2-88 (115)
203 1na3_A Designed protein CTPR2; 98.7 2.1E-07 7.3E-12 74.0 11.4 87 428-531 5-91 (91)
204 2l6j_A TPR repeat-containing p 98.7 1.4E-08 4.9E-13 84.6 4.6 94 558-667 4-103 (111)
205 3ma5_A Tetratricopeptide repea 98.6 1.3E-07 4.5E-12 77.1 8.6 71 638-717 3-73 (100)
206 2kc7_A BFR218_protein; tetratr 98.6 1E-07 3.6E-12 77.4 7.8 89 604-717 4-93 (99)
207 1klx_A Cysteine rich protein B 98.6 4.3E-07 1.5E-11 79.0 11.8 110 531-671 9-126 (138)
208 3ma5_A Tetratricopeptide repea 98.6 4.1E-07 1.4E-11 74.1 10.6 69 309-385 8-76 (100)
209 1klx_A Cysteine rich protein B 98.5 8.2E-07 2.8E-11 77.2 11.3 109 237-379 10-126 (138)
210 2kc7_A BFR218_protein; tetratr 98.4 1.1E-06 3.9E-11 71.1 9.0 90 436-550 4-94 (99)
211 3txn_A 26S proteasome regulato 98.4 0.00056 1.9E-08 69.6 29.6 212 434-658 21-236 (394)
212 3txn_A 26S proteasome regulato 98.3 0.00028 9.4E-09 71.8 25.1 212 393-615 20-235 (394)
213 3u64_A Protein TP_0956; tetrat 98.3 7.8E-06 2.7E-10 78.0 12.7 85 616-717 179-272 (301)
214 3ly7_A Transcriptional activat 98.2 2E-05 6.9E-10 78.7 15.3 137 561-717 199-342 (372)
215 3u64_A Protein TP_0956; tetrat 98.2 8.4E-05 2.9E-09 71.0 17.8 106 428-550 148-273 (301)
216 2v5f_A Prolyl 4-hydroxylase su 98.2 2.3E-05 7.8E-10 64.0 12.1 83 600-691 5-87 (104)
217 3ly7_A Transcriptional activat 98.1 7.2E-05 2.5E-09 74.7 17.1 122 365-503 214-339 (372)
218 2v5f_A Prolyl 4-hydroxylase su 98.1 3.2E-05 1.1E-09 63.1 12.2 81 393-481 6-87 (104)
219 4g26_A Pentatricopeptide repea 98.1 0.00017 5.8E-09 77.3 19.9 168 434-629 28-204 (501)
220 4g26_A Pentatricopeptide repea 98.1 0.00011 3.7E-09 78.7 18.1 168 311-504 29-205 (501)
221 3bee_A Putative YFRE protein; 98.0 1.4E-05 4.8E-10 63.5 7.9 71 638-717 2-75 (93)
222 1pc2_A Mitochondria fission pr 98.0 3.8E-05 1.3E-09 66.0 10.5 86 616-717 14-103 (152)
223 3ffl_A Anaphase-promoting comp 98.0 5.3E-05 1.8E-09 65.4 11.2 130 221-360 20-165 (167)
224 3ffl_A Anaphase-promoting comp 98.0 0.00018 6.1E-09 62.2 14.2 127 560-695 22-166 (167)
225 3bee_A Putative YFRE protein; 97.8 8.5E-05 2.9E-09 58.9 8.8 64 600-671 6-72 (93)
226 1pc2_A Mitochondria fission pr 97.7 0.0003 1E-08 60.5 11.5 75 599-689 31-110 (152)
227 4b4t_P 26S proteasome regulato 97.7 0.0081 2.8E-07 63.0 24.8 218 406-632 30-250 (445)
228 4b4t_P 26S proteasome regulato 97.5 0.029 9.9E-07 58.8 24.9 220 363-592 29-252 (445)
229 1nzn_A CGI-135 protein, fissio 97.2 0.0029 9.9E-08 52.2 10.2 86 616-717 17-106 (126)
230 4h7y_A Dual specificity protei 96.9 0.0063 2.2E-07 51.3 10.1 104 559-671 14-123 (161)
231 4h7y_A Dual specificity protei 96.8 0.013 4.3E-07 49.5 10.9 108 432-549 13-126 (161)
232 1nzn_A CGI-135 protein, fissio 96.5 0.025 8.6E-07 46.6 10.7 74 600-688 35-112 (126)
233 4b4t_R RPN7, 26S proteasome re 95.7 0.053 1.8E-06 56.5 11.3 109 348-461 129-237 (429)
234 4ady_A RPN2, 26S proteasome re 95.6 4 0.00014 46.1 39.7 188 500-712 393-587 (963)
235 4b4t_S RPN3, 26S proteasome re 95.6 0.094 3.2E-06 54.6 12.2 144 359-505 145-301 (523)
236 4b4t_R RPN7, 26S proteasome re 95.5 0.045 1.5E-06 57.1 9.8 110 471-587 128-237 (429)
237 3o48_A Mitochondria fission 1 95.5 0.21 7.2E-06 41.2 11.6 75 599-689 39-117 (134)
238 3mkq_A Coatomer beta'-subunit; 95.5 0.41 1.4E-05 54.6 18.9 26 351-376 682-707 (814)
239 4gns_B Protein CSD3, chitin bi 95.4 0.27 9.1E-06 54.4 15.8 124 529-668 260-397 (754)
240 4gns_B Protein CSD3, chitin bi 95.4 4.3 0.00015 44.9 28.9 82 599-689 612-702 (754)
241 3o48_A Mitochondria fission 1 95.4 0.11 3.7E-06 43.0 9.5 67 642-717 40-110 (134)
242 3mkq_A Coatomer beta'-subunit; 95.2 0.19 6.5E-06 57.4 15.0 50 273-336 660-709 (814)
243 2ff4_A Probable regulatory pro 95.2 0.36 1.2E-05 49.4 15.4 119 524-678 122-241 (388)
244 1y8m_A FIS1; mitochondria, unk 95.2 0.22 7.5E-06 41.7 10.8 69 640-717 37-109 (144)
245 1y8m_A FIS1; mitochondria, unk 94.8 0.22 7.7E-06 41.7 10.0 65 599-671 38-106 (144)
246 4b4t_S RPN3, 26S proteasome re 94.8 0.34 1.2E-05 50.5 13.6 171 401-575 145-328 (523)
247 2wpv_A GET4, UPF0363 protein Y 94.7 3.5 0.00012 40.1 28.3 104 433-541 54-158 (312)
248 2wpv_A GET4, UPF0363 protein Y 94.6 3.6 0.00012 40.0 20.6 175 514-714 30-217 (312)
249 3spa_A Mtrpol, DNA-directed RN 94.5 0.42 1.5E-05 54.0 14.2 105 556-671 125-230 (1134)
250 3lpz_A GET4 (YOR164C homolog); 94.4 4.1 0.00014 39.9 30.2 228 395-656 38-296 (336)
251 2ff4_A Probable regulatory pro 94.4 1.3 4.5E-05 45.2 17.0 103 272-382 122-237 (388)
252 3spa_A Mtrpol, DNA-directed RN 94.4 0.41 1.4E-05 54.1 13.8 104 599-714 126-230 (1134)
253 3lpz_A GET4 (YOR164C homolog); 93.6 6 0.0002 38.8 29.0 234 436-698 39-296 (336)
254 3kae_A CDC27, possible protein 93.6 3.2 0.00011 35.6 19.7 176 521-717 37-240 (242)
255 3mkq_B Coatomer subunit alpha; 93.4 1.2 4E-05 39.2 12.2 102 274-418 14-115 (177)
256 3mkq_B Coatomer subunit alpha; 92.0 1.9 6.5E-05 37.8 11.7 101 318-458 15-115 (177)
257 4fhn_B Nucleoporin NUP120; pro 91.6 4 0.00014 48.3 17.8 182 519-715 844-1051(1139)
258 4fhn_B Nucleoporin NUP120; pro 91.5 4.9 0.00017 47.5 18.4 102 394-499 844-963 (1139)
259 1ya0_A SMG-7 transcript varian 90.9 0.74 2.5E-05 48.4 9.4 63 600-670 152-214 (497)
260 3uzd_A 14-3-3 protein gamma; s 88.3 16 0.00055 33.8 17.3 184 352-548 6-205 (248)
261 4b4t_O 26S proteasome regulato 88.2 20 0.00068 36.3 17.5 131 370-505 59-200 (393)
262 4b4t_O 26S proteasome regulato 88.2 12 0.0004 38.1 15.7 106 524-629 83-198 (393)
263 1ya0_A SMG-7 transcript varian 87.0 1.6 5.6E-05 45.8 8.6 63 433-503 153-215 (497)
264 1qsa_A Protein (soluble lytic 86.5 40 0.0014 36.5 27.2 128 564-713 220-347 (618)
265 3re2_A Predicted protein; meni 85.8 12 0.0004 36.4 12.6 73 432-507 255-329 (472)
266 1zbp_A Hypothetical protein VP 84.2 7.9 0.00027 36.4 10.8 55 441-503 6-60 (273)
267 1o9d_A 14-3-3-like protein C; 84.1 28 0.00094 32.6 19.8 183 351-546 9-207 (260)
268 2crb_A Nuclear receptor bindin 83.9 8.7 0.0003 29.0 8.5 43 220-263 14-56 (97)
269 4a5x_A MITD1, MIT domain-conta 83.8 5.7 0.00019 30.1 8.0 49 220-269 15-63 (86)
270 3esl_A Checkpoint serine/threo 83.7 11 0.00039 33.6 11.1 87 495-587 58-144 (202)
271 1zbp_A Hypothetical protein VP 83.6 8.4 0.00029 36.2 10.7 100 609-717 6-132 (273)
272 1o9d_A 14-3-3-like protein C; 83.5 29 0.001 32.4 21.5 183 475-672 9-208 (260)
273 2o8p_A 14-3-3 domain containin 83.3 27 0.00091 31.8 20.8 177 479-672 11-198 (227)
274 3u84_A Menin; MLL, JUND, ledgf 82.9 17 0.00057 36.1 12.6 55 451-508 298-352 (550)
275 2o8p_A 14-3-3 domain containin 82.3 29 0.001 31.6 19.3 182 355-547 11-198 (227)
276 3ubw_A 14-3-3E, 14-3-3 protein 82.0 33 0.0011 32.0 19.3 56 449-504 173-229 (261)
277 2br9_A 14-3-3E, 14-3-3 protein 80.6 35 0.0012 31.4 19.2 184 352-548 7-204 (234)
278 3esl_A Checkpoint serine/threo 80.4 12 0.00042 33.4 10.0 87 243-337 58-144 (202)
279 4gq4_A Menin; tumor suppressor 80.3 25 0.00085 35.0 12.8 58 450-510 282-339 (489)
280 3re2_A Predicted protein; meni 78.6 47 0.0016 32.3 13.8 72 558-632 255-328 (472)
281 4ady_A RPN2, 26S proteasome re 77.7 1E+02 0.0035 35.0 33.0 209 431-668 375-586 (963)
282 1wfd_A Hypothetical protein 15 77.6 11 0.00039 28.9 8.0 49 220-269 14-62 (93)
283 3ubw_A 14-3-3E, 14-3-3 protein 76.6 49 0.0017 30.8 23.7 58 616-673 172-230 (261)
284 2br9_A 14-3-3E, 14-3-3 protein 76.3 47 0.0016 30.5 23.0 60 616-675 146-206 (234)
285 2w2u_A Hypothetical P60 katani 76.3 6.7 0.00023 29.4 6.1 37 220-257 18-54 (83)
286 2v6y_A AAA family ATPase, P60 75.7 7.5 0.00026 29.2 6.3 41 220-261 10-50 (83)
287 3kae_A CDC27, possible protein 75.6 38 0.0013 29.1 21.8 98 395-503 36-143 (242)
288 2npm_A 14-3-3 domain containin 75.5 53 0.0018 30.7 20.9 184 351-548 29-229 (260)
289 2v6x_A Vacuolar protein sortin 75.5 11 0.00037 28.4 7.3 50 219-269 11-60 (85)
290 3u84_A Menin; MLL, JUND, ledgf 74.7 63 0.0021 32.2 13.7 68 576-648 297-364 (550)
291 3uzd_A 14-3-3 protein gamma; s 74.1 56 0.0019 30.3 24.6 184 476-674 6-206 (248)
292 2crb_A Nuclear receptor bindin 72.7 17 0.00057 27.5 7.2 39 597-635 12-50 (97)
293 2wvi_A Mitotic checkpoint seri 72.7 15 0.00053 31.6 8.3 83 242-337 43-125 (164)
294 4a1g_A Mitotic checkpoint seri 72.2 15 0.0005 31.3 7.9 85 240-337 46-130 (152)
295 2wvi_A Mitotic checkpoint seri 72.1 14 0.00048 31.9 7.9 83 494-587 43-125 (164)
296 2cpt_A SKD1 protein, vacuolar 71.6 16 0.00053 29.5 7.6 52 220-272 17-69 (117)
297 2rpa_A Katanin P60 ATPase-cont 70.5 9.7 0.00033 28.0 5.5 40 222-262 13-52 (78)
298 2npm_A 14-3-3 domain containin 68.1 79 0.0027 29.5 23.1 58 616-674 172-230 (260)
299 2qx5_A Nucleoporin NIC96; mRNA 67.5 1.4E+02 0.0049 32.3 18.0 21 271-291 300-320 (661)
300 3efz_A 14-3-3 protein; 14-3-3, 67.0 47 0.0016 31.1 10.7 74 306-379 140-226 (268)
301 3iqu_A 14-3-3 protein sigma; s 66.8 78 0.0027 29.0 20.5 178 311-503 11-205 (236)
302 4a1g_A Mitotic checkpoint seri 66.7 14 0.00047 31.4 6.6 84 493-587 47-130 (152)
303 4aez_C MAD3, mitotic spindle c 66.4 18 0.00063 32.8 7.7 84 241-337 96-179 (223)
304 4aez_C MAD3, mitotic spindle c 66.3 63 0.0022 29.3 11.2 84 493-587 96-179 (223)
305 3iqu_A 14-3-3 protein sigma; s 64.0 89 0.003 28.7 24.0 182 475-673 9-207 (236)
306 4gq4_A Menin; tumor suppressor 61.7 1.3E+02 0.0046 30.0 16.1 71 559-632 263-335 (489)
307 1wy6_A Hypothetical protein ST 58.8 48 0.0016 27.5 7.9 54 609-670 100-153 (172)
308 4gq2_M Nucleoporin NUP120; bet 55.8 46 0.0016 38.2 10.7 99 218-321 837-949 (950)
309 2cpt_A SKD1 protein, vacuolar 55.0 63 0.0021 26.0 8.3 45 648-692 24-70 (117)
310 4a5x_A MITD1, MIT domain-conta 54.6 66 0.0022 24.1 8.5 42 645-686 19-61 (86)
311 2ijq_A Hypothetical protein; s 53.1 26 0.00089 30.0 6.0 73 354-426 36-109 (161)
312 3t5v_B Nuclear mRNA export pro 52.8 77 0.0026 32.6 10.6 99 476-575 178-282 (455)
313 2rpa_A Katanin P60 ATPase-cont 51.1 20 0.00068 26.4 4.2 33 475-507 13-45 (78)
314 1wfd_A Hypothetical protein 15 49.7 81 0.0028 24.0 7.8 42 646-687 19-61 (93)
315 4gq2_M Nucleoporin NUP120; bet 49.5 51 0.0017 37.9 9.7 68 394-461 842-926 (950)
316 2w2u_A Hypothetical P60 katani 48.3 66 0.0022 24.0 6.9 30 647-676 24-53 (83)
317 2v6x_A Vacuolar protein sortin 48.2 82 0.0028 23.4 7.8 43 646-688 17-60 (85)
318 2ijq_A Hypothetical protein; s 46.9 47 0.0016 28.4 6.6 72 562-633 36-108 (161)
319 2v6y_A AAA family ATPase, P60 46.5 75 0.0026 23.6 7.0 30 647-676 16-45 (83)
320 3t5v_B Nuclear mRNA export pro 45.2 60 0.002 33.4 8.4 70 354-424 180-253 (455)
321 3ax2_A Mitochondrial import re 44.7 20 0.0007 25.9 3.4 29 688-717 21-49 (73)
322 2vkj_A TM1634; membrane protei 42.8 1E+02 0.0035 23.0 7.9 47 644-696 55-102 (106)
323 2cwy_A Hypothetical protein TT 40.2 56 0.0019 25.0 5.5 67 356-426 7-73 (94)
324 2cwy_A Hypothetical protein TT 39.6 85 0.0029 24.0 6.5 67 563-633 6-72 (94)
325 1om2_A Protein (mitochondrial 39.5 35 0.0012 26.2 4.1 29 688-717 24-52 (95)
326 2r17_C Vacuolar protein sortin 39.4 2.6E+02 0.0089 26.7 22.9 194 230-427 14-230 (298)
327 2a9u_A Ubiquitin carboxyl-term 38.7 1.7E+02 0.0059 24.4 9.2 41 644-686 44-84 (144)
328 3efz_A 14-3-3 protein; 14-3-3, 37.9 2.6E+02 0.0088 26.1 16.1 94 452-546 118-226 (268)
329 2yin_A DOCK2, dedicator of cyt 37.8 2.4E+02 0.0081 28.8 11.5 24 560-583 37-60 (436)
330 2vkj_A TM1634; membrane protei 36.1 1.3E+02 0.0046 22.4 8.0 48 307-360 52-100 (106)
331 3t5x_A PCI domain-containing p 32.6 1.1E+02 0.0038 27.3 7.2 62 260-325 9-70 (203)
332 2wb7_A PT26-6P; extra chromoso 31.8 2E+02 0.007 29.4 9.3 41 325-365 449-489 (526)
333 2wm9_A Dedicator of cytokinesi 31.4 3.1E+02 0.01 27.8 11.1 96 598-695 9-139 (428)
334 3t5x_A PCI domain-containing p 30.3 97 0.0033 27.7 6.4 59 430-491 12-70 (203)
335 1om2_A Protein (mitochondrial 29.1 1.3E+02 0.0043 23.1 5.7 30 477-506 23-52 (95)
336 1qsa_A Protein (soluble lytic 29.0 5.6E+02 0.019 27.4 38.0 194 480-704 220-433 (618)
337 2r17_C Vacuolar protein sortin 28.6 3.9E+02 0.013 25.4 23.5 154 432-590 99-270 (298)
338 3ax2_A Mitochondrial import re 28.5 1E+02 0.0035 22.2 4.9 26 604-629 21-46 (73)
339 2wm9_A Dedicator of cytokinesi 28.3 2.7E+02 0.0094 28.2 10.1 29 559-587 12-40 (428)
340 1wy6_A Hypothetical protein ST 28.0 2.1E+02 0.0071 23.8 7.1 34 346-379 121-154 (172)
341 3myv_A SUSD superfamily protei 27.5 83 0.0028 32.4 6.2 34 638-671 186-219 (454)
342 3myv_A SUSD superfamily protei 26.9 80 0.0027 32.6 6.0 34 597-630 187-220 (454)
343 2wb7_A PT26-6P; extra chromoso 26.5 1.9E+02 0.0067 29.6 8.1 41 617-657 449-489 (526)
344 3kez_A Putative sugar binding 25.5 89 0.003 32.3 6.0 33 597-629 193-225 (461)
345 3kez_A Putative sugar binding 25.3 92 0.0032 32.2 6.1 34 638-671 192-225 (461)
346 1zb1_A BRO1 protein; AIP1, BRO 23.2 5.6E+02 0.019 25.4 11.8 57 535-591 217-290 (392)
347 2xze_A STAM-binding protein; h 22.3 1.1E+02 0.0039 25.6 4.9 39 644-683 42-80 (146)
348 3r9m_A BRO1 domain-containing 22.3 5.8E+02 0.02 25.2 14.0 34 306-339 112-157 (376)
349 1zb1_A BRO1 protein; AIP1, BRO 22.1 3.4E+02 0.012 27.1 9.4 19 238-256 145-163 (392)
350 2pm7_A Protein WEB1, protein t 22.0 6E+02 0.021 25.4 18.0 170 525-709 164-360 (399)
351 3snx_A SUSD homolog, putative 21.7 1.1E+02 0.0039 31.4 5.9 33 262-294 188-220 (460)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-37 Score=327.15 Aligned_cols=386 Identities=19% Similarity=0.212 Sum_probs=346.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccch
Q 004851 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHA 304 (727)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 304 (727)
+.+|..++..|+ +++|+..|.++++.. |+...++..+|.++...|++++|+.++++++... +..
T Consensus 3 ~~~a~~~~~~g~-~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~- 66 (388)
T 1w3b_A 3 MELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLL- 66 (388)
T ss_dssp CTHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred hhHHHHHHHCCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc-
Confidence 356888999997 999999999998762 4456778899999999999999999999999875 333
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 004851 305 LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (727)
Q Consensus 305 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (727)
..++..+|.+|...|++++|+..|++++.+ +|....++..+|.++...|++++|+..|++++...|...
T Consensus 67 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 67 ---AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 335999999999999999999999999998 788899999999999999999999999999999876553
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004851 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKT 464 (727)
Q Consensus 385 ~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 464 (727)
.++..+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 136 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 198 (388)
T 1w3b_A 136 --------CVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--- 198 (388)
T ss_dssp --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred --------HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 56889999999999999999999999864 4566788999999999999999999999999998
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004851 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (727)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (727)
.|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++
T Consensus 199 -----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 199 -----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp -----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888999999999999999999999999999998 34446789999999999999999999999999
Q ss_pred HHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004851 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFE 624 (727)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 624 (727)
.+.+.. ..++..+|.++...|++++|+.+|++++++. +....++..+|.++...|++++|+.+|+
T Consensus 265 ~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 265 ELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 875443 4678999999999999999999999999862 2235788999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004851 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (727)
+++++ +|+...++..+|.+|...|++++|+.+|++++++ +|....++..+|.++..+|+
T Consensus 330 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 330 KALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence 99987 7888889999999999999999999999999975 68889999999999998875
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.8e-36 Score=318.35 Aligned_cols=368 Identities=18% Similarity=0.263 Sum_probs=333.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchH
Q 004851 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (727)
.+|..++..|++++|+..|++++... ++++ .++..+|.++...|++++|+.++++++.. +|..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~ 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDNT----GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence 36888999999999999999998875 4443 34788999999999999999999999998 7889
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 004851 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (727)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (727)
..++..+|.++...|++++|+.+|++++.+.|.. ..++..+|.++...|++++|+..|++++.. .|
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p 132 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF--------IDGYINLAAALVAAGDMEGAVQAYVSALQY------NP 132 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH------CT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Confidence 9999999999999999999999999999987554 356999999999999999999999999864 45
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004851 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 198 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------ 198 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 56678899999999999999999999999998 7888999999999999999999999999999998
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004851 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (727)
.|....++..+|.++...|++++|+..|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+
T Consensus 199 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 266 (388)
T 1w3b_A 199 ---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-- 266 (388)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 34457789999999999999999999999999986654 568889999999999999999999999885
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004851 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
.+....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++
T Consensus 267 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 267 ------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1223568999999999999999999999999998 78888899999999999999999999999998
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
++ +|+...++..+|.+|...|++++|+ ..|+++++++|+
T Consensus 333 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~ 371 (388)
T 1w3b_A 333 EV--------FPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPT 371 (388)
T ss_dssp TS--------CTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTT
T ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 64 6888899999999999999999999 999999999987
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-35 Score=327.59 Aligned_cols=448 Identities=13% Similarity=0.099 Sum_probs=363.7
Q ss_pred cCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004851 192 AGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (727)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 271 (727)
..+..+...+++..++..+.......|+. ..++.+|..+...|+ +++|+..|++++.. +....++..+
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~----------~~~~~~~~~l 156 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY----------NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG----------GTCHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc----------ccchhHHHHH
Confidence 34444555667776665555554555654 567889999999997 99999998887642 2235578899
Q ss_pred HHHHHHcCChhHHHHHHHHhcccchhc-------cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004851 272 AAIYCSLGQYNEAIPVLEQSIEIPVIE-------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
+.+|...|++++|+.+|++........ ...........+|+.+|.+|...|++++|+.+|+++++.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 229 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV------- 229 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 999999999999999999743321000 000000123567999999999999999999999999987
Q ss_pred CCchHHHHHHHH--------------------------------------HHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004851 345 TDPRVGETCRYL--------------------------------------AEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 345 ~~~~~~~~~~~l--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
+|....++..+ +..|...|++++|+.+|++++.. +..
T Consensus 230 -~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~--- 304 (597)
T 2xpi_A 230 -DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS--- 304 (597)
T ss_dssp -CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC---
T ss_pred -CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch---
Confidence 45555554444 34455678999999999988876 211
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004851 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (727)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (727)
..++..++.+|...|++++|+.+|++++.. .+....++..++.++...|++++|+..+++++..
T Consensus 305 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 368 (597)
T 2xpi_A 305 -----SDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----- 368 (597)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Confidence 367999999999999999999999998753 2333456788999999999999999999999976
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004851 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (727)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (727)
.|....++..+|.+|...|++++|+.+|++++++ .+....++..++.+|...|++++|+.+|++++..
T Consensus 369 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 369 ---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp ---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778899999999999999999999999999987 3334678999999999999999999999999987
Q ss_pred HHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004851 547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 547 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
.+.. ..++..+|.+|...|++++|+.+|+++++.. + ....++..+|.++...|++++|+.+|+++
T Consensus 437 ~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 437 FQGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYALF----Q----YDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp TTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----C----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Cccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----CChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5543 3678899999999999999999999998762 1 13468999999999999999999999999
Q ss_pred HHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHH
Q 004851 627 RSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKA 705 (727)
Q Consensus 627 l~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~ 705 (727)
++....... +|+. ..++..+|.+|...|++++|+.+|++++++ .|....++..|+.+|...|++++|.
T Consensus 502 ~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~- 570 (597)
T 2xpi_A 502 LLLVKKTQS--NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAI- 570 (597)
T ss_dssp HHHHHHSCC--CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHH-
T ss_pred HHhhhcccc--chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHH-
Confidence 998655322 4553 779999999999999999999999999987 4777889999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 004851 706 QSLETLLDANSR 717 (727)
Q Consensus 706 ~~l~~al~~~p~ 717 (727)
..|+++++++|+
T Consensus 571 ~~~~~~l~~~p~ 582 (597)
T 2xpi_A 571 THLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999999997
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-33 Score=310.10 Aligned_cols=428 Identities=12% Similarity=0.029 Sum_probs=348.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004851 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
.....|..++..+...|+ +++|+.+|++++... |++ ..+..+|.+|...|++++|+..|++++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~-------p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 147 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDIT-------GNP---NDAFWLAQVYCCTGDYARAKCLLTKEDLYN--- 147 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---
T ss_pred HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhC-------CCc---hHHHHHHHHHHHcCcHHHHHHHHHHHhccc---
Confidence 467788999999999997 999999999998653 222 456789999999999999999999997652
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHH
Q 004851 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ--------KQVLGETDPRVGETCRYLAEAHVQALQFSEAQ 370 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 370 (727)
.+ ..++..++.+|...|++++|+..|++..... ........+....+++.+|.+|...|++++|+
T Consensus 148 ---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 148 ---RS----SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp ---TC----HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---cc----hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 22 2358899999999999999999998632110 00000011456889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC------------------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004851 371 KFCQMALDIHKDNGSPA------------------------------SLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (727)
Q Consensus 371 ~~~~~al~~~~~~~~~~------------------------------~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (727)
.+|++++...+...... .......+..++..|...|++++|+.+|++++.
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 99999998765432100 000000112224455567888999998887753
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004851 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (727)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (727)
. +....++..++.+|...|++++|+.+|++++.. .|....++..++.++...|++++|+..++++
T Consensus 301 ~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 301 L-------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp G-------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 455678899999999999999999999999987 5667788999999999999999999999999
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004851 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (727)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (727)
+.. .+....++..+|.+|...|++++|+.+|++++++.+.. ..++..++.+|...|++++|+.+
T Consensus 366 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 366 VDR---------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHH---------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred Hhh---------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 977 23346788999999999999999999999999875443 46889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004851 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (727)
|++++.... ....++..+|.+|...|++++|+.+|+++++. .|....++..+|.+|...|++++
T Consensus 430 ~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 430 YTTAARLFQ--------GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHHTTT--------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCc--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHH
Confidence 999987521 12468889999999999999999999999998 77778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 661 AIEILEFVVGIREEKLGTANPDV-DDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 661 A~~~~~~al~~~~~~~g~~~p~~-~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|+.+|++++++.... +.+|.. ..++..++.+|...|++++|. ..|+++++++|.
T Consensus 494 A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~ 548 (597)
T 2xpi_A 494 AINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAI-DALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCC
Confidence 999999999876543 234554 789999999999999999999 999999999885
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.8e-32 Score=301.86 Aligned_cols=421 Identities=14% Similarity=0.146 Sum_probs=327.6
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004851 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
..+..++.+|..++..|+ +++|+.+|++++... |....++..+|.+|..+|++++|+..|++++.+.
T Consensus 23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 467899999999999997 999999999999873 4457789999999999999999999999999875
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 004851 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (727)
+.++ .++..+|.++...|++++|+..|+ ++... |.....+ ...+...+...+|+..+++++.
T Consensus 90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--------~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLN--------GDFDGAS---IEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC----------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--------CCCChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 358999999999999999999995 66652 3332222 2234445556778888888876
Q ss_pred HHHhcCCCCCHH--H---------------------------HHHHHHH--------HHHHHHcCCHHHHHHHHHHHHHH
Q 004851 379 IHKDNGSPASLE--E---------------------------AADRRLM--------GLICETKGDHEAALEHLVLASMT 421 (727)
Q Consensus 379 ~~~~~~~~~~~~--~---------------------------a~~~~~l--------a~~~~~~g~~~~A~~~~~~al~~ 421 (727)
..+.......+. . ......+ +......|++++|+..|++++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp -------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 543322211100 0 0012222 22233345778888888777643
Q ss_pred HHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004851 422 MIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (727)
Q Consensus 422 ~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (727)
. +..+ ..+.++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|
T Consensus 232 ~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 232 N---TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred C---CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHH
Confidence 2 2222 24667899999999999999999999999998 666 789999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHH
Q 004851 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS 577 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 577 (727)
++++... +....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|
T Consensus 300 ~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 300 QKAVDLN---------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-------VYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence 9999983 3346789999999999999999999999999986654 26788999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc--
Q 004851 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-- 655 (727)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 655 (727)
+.+|++++... +....++..+|.++...|++++|+.+|++++........ .......+..+|.++...
T Consensus 364 ~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 364 EAFFNETKLKF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhh
Confidence 99999999862 123468889999999999999999999999998654322 222334577889999999
Q ss_pred --------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 656 --------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 656 --------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|++++|+.+|++++.+ +|....++..+|.+|...|++++|+ ..|+++++++|.
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~ 494 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAI-ELFEDSAILART 494 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--
T ss_pred ccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence 9999999999999987 5777889999999999999999999 999999999886
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=293.66 Aligned_cols=403 Identities=12% Similarity=0.085 Sum_probs=337.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhc
Q 004851 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (727)
+.+..++.+|..++..|+ |++|+.+|++++... |+ ..++..+|.++...|++++|+..|++++.+.
T Consensus 4 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-------p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 69 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKK-YDDAIKYYNWALELK-------ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK--- 69 (514)
T ss_dssp HHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-------cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---
Confidence 357789999999999997 999999999999873 33 6679999999999999999999999999875
Q ss_pred cCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----------------------h-------------
Q 004851 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-----------------------L------------- 342 (727)
Q Consensus 299 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~------------- 342 (727)
+... .++..+|.+|..+|++++|+..|++++...+.. +
T Consensus 70 --p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 143 (514)
T 2gw1_A 70 --PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL 143 (514)
T ss_dssp --SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------
T ss_pred --hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4443 358999999999999999999999987653100 0
Q ss_pred -----------------------------------CCCCchHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcC
Q 004851 343 -----------------------------------GETDPRVGETCRYLAEAHVQ---ALQFSEAQKFCQMALDIHKDNG 384 (727)
Q Consensus 343 -----------------------------------~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 384 (727)
.-..|....++..+|.+++. .|++++|+.+|++++...+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 00013347778888888886 8999999999999999543222
Q ss_pred --CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004851 385 --SPAS----LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 385 --~~~~----~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
.+.. +....++..+|.++...|++++|+.+|++++.. .+. ..++..+|.++...|++++|+.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111 445678999999999999999999999999864 233 788999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHH
Q 004851 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (727)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (727)
+.. .|....++..+|.++...|++++|+.+|++++.+.. ....++..+|.++...|++++|+.
T Consensus 297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP---------ENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS---------SCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHHcCCHHHHHH
Confidence 987 677788999999999999999999999999998732 234578999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH---hCC
Q 004851 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ---RYS 615 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 615 (727)
++++++...+.. ..++..+|.++...|++++|+.+|++++.......... ....++..+|.++.. .|+
T Consensus 360 ~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 360 LFSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCC
Confidence 999999886554 36788999999999999999999999999765432211 113488999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRL 690 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~L 690 (727)
+++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+ +|....++..+
T Consensus 431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~ 489 (514)
T 2gw1_A 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHH
Confidence 99999999999998 7888889999999999999999999999999987 56666666554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=301.45 Aligned_cols=393 Identities=16% Similarity=0.122 Sum_probs=332.7
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 004851 263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (727)
Q Consensus 263 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (727)
..+.++..+|.+++..|+|++|+..|++++... ++ ..++..+|.++...|++++|+..|+++++.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED-----PVFYSNLSACYVSVGDLKKVVEMSTKALEL----- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence 346789999999999999999999999999875 22 235899999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC-----------------------------------
Q 004851 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA----------------------------------- 387 (727)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------------- 387 (727)
+|....++..+|.++...|++++|+..|++++...+......
T Consensus 69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 788899999999999999999999999999987654110000
Q ss_pred ------------------------------------CHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHH----h
Q 004851 388 ------------------------------------SLEEAADRRLMGLICET---KGDHEAALEHLVLASMTMI----A 424 (727)
Q Consensus 388 ------------------------------------~~~~a~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~----~ 424 (727)
.+.....+..+|.++.. .|++++|+.+|++++.... .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 01114567778887776 8999999999999987431 1
Q ss_pred CCC----ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004851 425 NDQ----DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (727)
Q Consensus 425 ~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (727)
.+. .+....++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 112 2677889999999999999999999999999998 566 899999999999999999999999999
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004851 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (727)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (727)
+... +....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+
T Consensus 297 ~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 297 LKLD---------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-------IFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp HTTC---------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-------SHHHHHHHHHTTTTTCHHHHHHH
T ss_pred hhcC---------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 8872 2335678999999999999999999999999875543 35788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---cCC
Q 004851 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---IGR 657 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 657 (727)
|++++...+ ....++..+|.++...|++++|+.+|++++........ ......++..+|.++.. .|+
T Consensus 361 ~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 361 FSEAKRKFP--------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--IYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHST--------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS--CSSCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHcc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHhhhhhcCC
Confidence 999987621 12468899999999999999999999999988332111 11113489999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+++|+.+|++++.+ +|....++..+|.+|...|++++|. ..|+++++++|+
T Consensus 431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~ 481 (514)
T 2gw1_A 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhccc
Confidence 99999999999987 5777889999999999999999999 999999999986
No 8
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.5e-31 Score=285.89 Aligned_cols=407 Identities=14% Similarity=0.074 Sum_probs=295.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHH
Q 004851 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (727)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 317 (727)
.+.++..+++.+..... ..++...+.++..||.++..+|++++|+++|++|+++.+...+.......+.+|.++|.+
T Consensus 27 ~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 27 GENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 45566666666554322 223344577899999999999999999999999999865443333222335568999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 004851 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (727)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (727)
|..+|++++|+.+|++++++.+...+..++..+.++..+|.++...| +|++|+.+|++++.+.|... .++
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--------~~~ 175 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--------EFT 175 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--------HHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--------HHH
Confidence 99999999999999999999988777767778888999888877654 79999999999999987542 446
Q ss_pred HHHHHHH---HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 396 RLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGE 468 (727)
Q Consensus 396 ~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~ 468 (727)
..++.++ ...+++++|++.|++++.+ .|....++..+|..+. ..|++++|+.++++++..
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------- 242 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------- 242 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------
Confidence 6666664 4567889999999999864 3444456666665554 456888999999999988
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc------------------
Q 004851 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM------------------ 530 (727)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------ 530 (727)
.|....++..+|.+|...|++++|+..|+++++. .|....++..+|.+|...
T Consensus 243 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~ 312 (472)
T 4g1t_A 243 -APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312 (472)
T ss_dssp -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred -CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888899999999999999999999999999998 445577888898887653
Q ss_pred -ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 004851 531 -NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (727)
Q Consensus 531 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (727)
+.+++|+.++++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+ ...+.....++..+|.+
T Consensus 313 ~~~~~~A~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 313 LELIGHAVAHLKKADEANDNL-------FRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT-------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence 34667788888887775544 245778999999999999999999999875 12222333456666754
Q ss_pred -HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004851 610 -CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKR 688 (727)
Q Consensus 610 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~ 688 (727)
+...|++++|+.+|++++++ .|....... ....+..++++++.. +|..+.++.
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~----------~~~~l~~~~~~~l~~--------~p~~~~~~~ 434 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKI--------NQKSREKEK----------MKDKLQKIAKMRLSK--------NGADSEALH 434 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHH----------HHHHHHHHHHHHHHH--------CC-CTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CcccHHHHH----------HHHHHHHHHHHHHHh--------CCCCHHHHH
Confidence 45789999999999999998 565433221 223345566666654 688888999
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 689 RLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 689 ~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.||.+|...|++++|+ ++|++||++.|.
T Consensus 435 ~LG~~~~~~g~~~~A~-~~y~kALe~~~~ 462 (472)
T 4g1t_A 435 VLAFLQELNEKMQQAD-EDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 9999999999999999 999999999887
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=8.9e-30 Score=275.04 Aligned_cols=400 Identities=14% Similarity=0.115 Sum_probs=297.2
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 004851 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (727)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 288 (727)
.+.+....+|..+..++.+|..++..|+ +++|+.+|++++... |....++..+|.+|...|++++|+.+|
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566677889999999999999999997 999999999998762 334778899999999999999999999
Q ss_pred HHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH---HHHHHHHHHHHHhcC
Q 004851 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG---ETCRYLAEAHVQALQ 365 (727)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 365 (727)
++++... +.. ..++..+|.+|...|++++|+.+|++++.. .|... .++..++.++.
T Consensus 84 ~~al~~~-----p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~---- 142 (450)
T 2y4t_A 84 TKVIQLK-----MDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE---- 142 (450)
T ss_dssp HHHHHHC-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH----
T ss_pred HHHHhcC-----CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH----
Confidence 9999875 333 235888999999999999999999999887 56665 66666554421
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004851 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (727)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (727)
...+..+|.++...|++++|+.+|++++.. .|....++..+|.+|...
T Consensus 143 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 143 --------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKE 190 (450)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHC
Confidence 122455677777778888888888777653 334456777788888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH------
Q 004851 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG------ 519 (727)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 519 (727)
|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+.. +.......
T Consensus 191 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 191 GEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ------DHKRCFAHYKQVKK 256 (450)
T ss_dssp TCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHH
Confidence 8888888888888776 466677788888888888888888888888887621 12222111
Q ss_pred ---HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004851 520 ---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (727)
Q Consensus 520 ---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (727)
+..+|.++...|++++|+.+|++++.+.+. .......++..+|.++...|++++|+.++++++.+.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------- 325 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-------- 325 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 244599999999999999999999987543 222335678899999999999999999999999861
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH------------HHHcC-----ChH
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT------------YDAIG-----RLD 659 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~ 659 (727)
+....++..+|.++...|++++|+.+|++++++ .|+...++..++.+ |..+| +.+
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 224578999999999999999999999999998 78888888999854 44455 567
Q ss_pred HHHHHHHH-HHHHHHHhcCCCC--hhHHHHHHHHHHHHHHhCChhHHH
Q 004851 660 DAIEILEF-VVGIREEKLGTAN--PDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 660 ~A~~~~~~-al~~~~~~~g~~~--p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
++...|++ ++........... ......+..++.+|..+|+.+++.
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 77888886 5543111110000 113456778888899888887764
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=7.4e-31 Score=285.44 Aligned_cols=397 Identities=14% Similarity=0.049 Sum_probs=287.6
Q ss_pred CCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccc
Q 004851 216 DKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIP 295 (727)
Q Consensus 216 ~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 295 (727)
.++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.+|++++.+.
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 344556788899999999997 9999999999999998876655667788899999999999999999999999999987
Q ss_pred hhccCccchHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---hcCHHHHH
Q 004851 296 VIEEGQEHALAKFAGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ---ALQFSEAQ 370 (727)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~ 370 (727)
+...++.++. ...++..+|.++... ++|++|+.+|++++++ +|....++..++.++.. .+++++|+
T Consensus 125 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 125 EKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred Hhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHHH
Confidence 6554443321 234577788777765 4799999999999999 78888888888887654 56778999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 004851 371 KFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446 (727)
Q Consensus 371 ~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 446 (727)
..|++++.+.|... .++..+|..+. ..|++++|+.++++++.. .|....++..+|.+|...|
T Consensus 196 ~~~~~al~l~p~~~--------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 196 DPLRQAIRLNPDNQ--------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHHHCSSCH--------HHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCCcch--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcC
Confidence 99999999875542 44666665554 456788999999988753 4556678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHHhcC
Q 004851 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-------------------GKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~ 507 (727)
++++|+..|+++++. +|....++..+|.+|... +.+++|+..+++++.+
T Consensus 262 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---- 329 (472)
T 4g1t_A 262 EPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA---- 329 (472)
T ss_dssp CHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc----
Confidence 999999999999998 888999999999988653 3356777888888777
Q ss_pred CCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 004851 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 586 (727)
.+....++..+|.+|...|++++|+.+|++++.+.+. +.....++..+|.+ +...|++++|+.+|++++.
T Consensus 330 -----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 330 -----NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp -----CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred -----CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334567889999999999999999999999976321 11223445666654 4578999999999999998
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004851 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
+.+. .. . ..+....+..++++++.. +|..+.++..||.+|..+|++++|+++|+
T Consensus 401 i~~~-----~~---~----------~~~~~~~l~~~~~~~l~~--------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 401 INQK-----SR---E----------KEKMKDKLQKIAKMRLSK--------NGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp SCCC-----CH---H----------HHHHHHHHHHHHHHHHHH--------CC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred cCcc-----cH---H----------HHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6211 11 1 111234455667777777 88888899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHH
Q 004851 667 FVVGIREEKLGTANPDVDDEKRRLA 691 (727)
Q Consensus 667 ~al~~~~~~~g~~~p~~~~~~~~La 691 (727)
+|+++ .|..+.+...+|
T Consensus 455 kALe~--------~~~~p~a~~~~G 471 (472)
T 4g1t_A 455 RGLES--------GSLIPSASSWNG 471 (472)
T ss_dssp -------------------------
T ss_pred HHHhc--------CCCCCcHhhcCC
Confidence 99987 344555555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3.6e-29 Score=270.22 Aligned_cols=351 Identities=15% Similarity=0.141 Sum_probs=294.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004851 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
....++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++...+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--- 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Confidence 3456999999999999999999999999988 68889999999999999999999999999999987554
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH---HH------------HHHHHHHHHHcCCHHHH
Q 004851 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA---SV------------DCSIGDTYLSLSRYDEA 451 (727)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A 451 (727)
..++..+|.+|...|++++|+.+|++++.. .|... .+ +..+|.++...|++++|
T Consensus 94 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 94 -----TAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 367999999999999999999999988742 22222 33 34557889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcc
Q 004851 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (727)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (727)
+.+|++++.. .|....++..+|.+|...|++++|+.+|++++... +....++..+|.+|...|
T Consensus 163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcC
Confidence 9999999987 68888999999999999999999999999999984 334678999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004851 532 ELEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (727)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (727)
++++|+.+|++++.+.+........ ....+..+|.++...|++++|+.+|++++.+. +..+.....++..+
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSIAEYTVRSKERI 301 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHH
Confidence 9999999999999875543100000 00112344999999999999999999999852 22333345689999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004851 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE 686 (727)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~ 686 (727)
|.++...|++++|+.++++++.+ +|....++..+|.+|...|++++|+.+|++++++ +|+...+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 365 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQI 365 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHH
Confidence 99999999999999999999998 7888899999999999999999999999999975 5777788
Q ss_pred HHHHHHH------------HHHhC-----ChhHHHHHHHHH-HHHHhhh
Q 004851 687 KRRLAEL------------LKEAG-----RVRSRKAQSLET-LLDANSR 717 (727)
Q Consensus 687 ~~~La~~------------~~~~g-----~~~~A~~~~l~~-al~~~p~ 717 (727)
+..++.+ |...| +.+++. +.|++ ++...|+
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd 413 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGG
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCC
Confidence 8888844 44455 556778 78876 8888887
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.1e-29 Score=281.03 Aligned_cols=418 Identities=13% Similarity=0.059 Sum_probs=327.3
Q ss_pred cccCCCccccccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004851 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (727)
Q Consensus 190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (727)
+...+......|++..|+..+..+...+|+...+++.+|.+++..|+ +++|+.+|++++.+. |....++.
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~ 97 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK---------PDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CchHHHHH
Confidence 44566677788889999988888888899999999999999999997 999999999999873 44577899
Q ss_pred HHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC----
Q 004851 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---- 345 (727)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 345 (727)
.+|.++...|++++|+..|+ ++.+. ++.... ....+...+...+|+..+++++..........
T Consensus 98 ~la~~~~~~g~~~~A~~~~~-~~~~~-----~~~~~~-------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLS-VLSLN-----GDFDGA-------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-HHC-----------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHhcC-----CCCChH-------HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 99999999999999999996 66654 222111 12233444555778888877765422111111
Q ss_pred -------------------------CchHHHHHHHHH--------HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004851 346 -------------------------DPRVGETCRYLA--------EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (727)
Q Consensus 346 -------------------------~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (727)
++........++ ......|++++|+.+|++++...|.... .....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~~~ 243 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LRENAA 243 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHHHH
Confidence 111111222232 2333446888888888888877654321 112235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
.++..+|.++...|++++|+.+|.+++.. .|. ..++..+|.++...|++++|+.+|++++.. .|.
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~ 308 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPE 308 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCC
Confidence 67899999999999999999999999864 333 678899999999999999999999999998 688
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004851 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
...++..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++...+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 377 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-- 377 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Confidence 88999999999999999999999999999983 2334678999999999999999999999999986554
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh----------CCHHHHHHH
Q 004851 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVEL 622 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~ 622 (727)
..++..+|.++...|++++|+.+|++++.+.+....... ....+..+|.++... |++++|+.+
T Consensus 378 -----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 378 -----PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp -----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 367889999999999999999999999998766543322 233467788999999 999999999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
|++++.. +|....++..+|.+|...|++++|+.+|++++++.
T Consensus 451 ~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 451 LTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999 88888999999999999999999999999999873
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2.3e-28 Score=254.96 Aligned_cols=333 Identities=15% Similarity=0.150 Sum_probs=283.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004851 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (727)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (727)
+..++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.++++++...|..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---- 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence 346899999999999999999999999998 78888999999999999999999999999999986543
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHcCCHHHHH
Q 004851 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSI------------GDTYLSLSRYDEAG 452 (727)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~ 452 (727)
..++..+|.++...|++++|+.+|++++. ..| ....++..+ |.++...|++++|+
T Consensus 71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----chHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 26799999999999999999999999874 244 455555555 79999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc
Q 004851 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (727)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (727)
.++++++.. .|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------KSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC
Confidence 999999998 6778899999999999999999999999999987 23346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCccH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004851 533 LEQAIKLLQKALKIYNDAPGQQSTV-----AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (727)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (727)
+++|+.+|++++...+......... ......+|.++...|++++|+.+|++++... +..+.....++..+|
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence 9999999999998765431100000 1113356899999999999999999998863 223334456788899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 004851 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK 687 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~ 687 (727)
.++...|++++|+.+|+++++. +|....++..+|.+|...|++++|+.+|++++++ +|+...++
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~ 343 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIR 343 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHH
Confidence 9999999999999999999998 7888889999999999999999999999999976 67777888
Q ss_pred HHHHHHHHHhCC
Q 004851 688 RRLAELLKEAGR 699 (727)
Q Consensus 688 ~~La~~~~~~g~ 699 (727)
..|+.++...++
T Consensus 344 ~~l~~~~~~~~~ 355 (359)
T 3ieg_A 344 EGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776543
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.9e-28 Score=259.01 Aligned_cols=344 Identities=15% Similarity=0.148 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004851 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 308 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
+..+..+|.++...|++++|+.+|+++++.. +.++ ..+.++..+|.++...|++++|+.++++++.+.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 3458899999999999999999999999982 2122 2467899999999999999999999999999987765
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------------------
Q 004851 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR------------------- 447 (727)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 447 (727)
.....+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 3456678899999999999999999999999999988888888889999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH
Q 004851 448 -YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (727)
Q Consensus 448 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (727)
+++|+.++++++.+..... +.+....++..+|.+|...|++++|+.++++++.+.... .+......++..+|.+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence 9999999999999988764 467788899999999999999999999999999998773 3456677899999999
Q ss_pred HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004851 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (727)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (727)
|...|++++|+.++++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+. ......++..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l 313 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSL 313 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence 999999999999999999999876 555566788999999999999999999999999999887654 34567899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004851 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
|.++...|++++|+.+|++++++...... .+....++..+|.++...|+...+...+...
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 99999999999999999999999887644 5677889999999999999875544444333
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=8.3e-28 Score=255.51 Aligned_cols=352 Identities=15% Similarity=0.154 Sum_probs=301.0
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
...+.++..+|.++...|++++|+.+|++++.+.+. .....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 445678899999999999999999999999998432 2233467899999999999999999999999999998888
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004851 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------------- 489 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 489 (727)
+.+..+.++..+|.++...|++++|+.++++++.+..... +.+....++..+|.+|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 8899999999999999999999999999999999987764 345667899999999999999
Q ss_pred ---hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 004851 490 ---LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (727)
Q Consensus 490 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (727)
+++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+.+.. +.....+.++..+|.
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 235 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTAL---GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 999999999999998774 3567788899999999999999999999999999999886 555566778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004851 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (727)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (727)
+|...|++++|+.+|++++.+...... ......++..+|.++...|++++|+.+|++++.+...... .+....++.
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~ 311 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACW 311 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcC--chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHH
Confidence 999999999999999999999887543 3455789999999999999999999999999999877543 456677999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
.+|.+|..+|++++|+.+|++++++.... ...+....++..++.++...|+...+.....+....+
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 377 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI 377 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 3457778899999999999998855441444443333
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=1.4e-27 Score=249.08 Aligned_cols=336 Identities=11% Similarity=0.057 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004851 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
+..+..+|.+++..|++++|+..|++++... +..+ .++..+|.++...|++++|+..|+++++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 5568899999999999999999999999875 3333 35899999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---hcCCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004851 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPA----SLEEAADRRLMGLICETKGDHEAALEHLVL 417 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (727)
.|....++..+|.++...|++++|+.+|++++...+ ...... .......+..+|.++...|++++|+.+|.+
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 688889999999999999999999999999998765 332100 000011123348999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 004851 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (727)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (727)
++.. .|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9764 3445678999999999999999999999999987 6778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChHhHHH---------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH
Q 004851 498 ENALRIYEKPVPGVPPEEIAS---------GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 568 (727)
++++..... .+.... ....+|.++...|++++|+.++++++...+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999998322 222222 23355899999999999999999999876432 223445678899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004851 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (727)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (727)
...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++++ +|+...++..+
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 346 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL 346 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence 99999999999999999861 223578999999999999999999999999998 78888888888
Q ss_pred HHHHHHcC
Q 004851 649 AGTYDAIG 656 (727)
Q Consensus 649 a~~~~~~g 656 (727)
+.++..++
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2.3e-26 Score=250.79 Aligned_cols=375 Identities=14% Similarity=0.147 Sum_probs=316.2
Q ss_pred CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCChhHHHHHHH
Q 004851 218 PGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLE 289 (727)
Q Consensus 218 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 289 (727)
+..+.+++.+|..++. .++ +++|+.+|++|++. . .+.+++.||.+|.. .+++++|+.+|+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4567899999999998 776 99999999999863 1 25678999999999 999999999999
Q ss_pred HhcccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---
Q 004851 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ--- 362 (727)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 362 (727)
++.+.. + ..+++.||.+|.. .+++++|+.+|+++.+. ....+++.||.+|..
T Consensus 104 ~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 104 KAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence 998652 2 2348889999999 89999999999999765 346889999999998
Q ss_pred -hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004851 363 -ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (727)
Q Consensus 363 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (727)
.+++++|+.+|+++++.. . ..++..+|.+|.. .+++++|+.+|+++... ....+++.
T Consensus 163 ~~~d~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~ 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG----N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence 889999999999998752 1 3679999999998 89999999999998752 22467889
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhcCCC
Q 004851 438 IGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 438 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
+|.+|.. .+++++|+.+|+++++. ....+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------ 288 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------ 288 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence 9999997 89999999999998864 235688999999999 99999999999999754
Q ss_pred CCChHhHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 004851 510 GVPPEEIASGLTDVSSIYESM-----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSF 581 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 581 (727)
+ ...++..+|.+|... +++++|+.+|+++++. +. ..+++.+|.+|...| ++++|+.+|
T Consensus 289 ~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 289 G-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp T-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 1 245788999999998 9999999999999874 11 367889999999877 899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---
Q 004851 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--- 654 (727)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 654 (727)
+++++. . ...+++.+|.+|.. .+++++|+.+|+++++. ....++++||.+|..
T Consensus 355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence 999874 1 25789999999999 89999999999999874 235689999999999
Q ss_pred -cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004851 655 -IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 655 -~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
.+++++|+.+|+++++.. +..|....+...|+.++....
T Consensus 415 ~~~d~~~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~~ 454 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQL 454 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhHH
Confidence 899999999999999873 222668888899998877543
No 18
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=2e-26 Score=245.47 Aligned_cols=315 Identities=17% Similarity=0.183 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004851 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
+..+..+..+|..++..|++++|+.+|++++.+. +.++.....++..+|.+|...|++++|+.+|++++.+....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4557778889999999999999999999999874 55555556679999999999999999999999999997664
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------
Q 004851 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-------------- 407 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~-------------- 407 (727)
.+.+....++..+|.+|...|++++|+.+|++++.+.+... .....+.++..+|.+|...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 33477889999999999999999999999999999987765 335567889999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (727)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (727)
+++|+.++.+++.+....+..+....++..+|.+|...|++++|+.++++++.+..... +......++..+|.+|
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 99999999999998888888888899999999999999999999999999999987754 3455677999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004851 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (727)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (727)
...|++++|+.+|++++.+.... .+......++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 99999999999999999998763 3455668899999999999999999999999999998876 5555667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 565 GVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
|.+|...|++++|+.+|++++.+.+..
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999986543
No 19
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=2.7e-26 Score=244.54 Aligned_cols=313 Identities=16% Similarity=0.200 Sum_probs=277.9
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
+.....+..+|..+...|++++|+.+|++++.+.+. .....+.++..+|.++...|++++|+.+|++++.+....+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 566778889999999999999999999999998433 2233456899999999999999999999999999988888
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-----------------
Q 004851 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------------- 489 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 489 (727)
+.+....++..+|.+|...|++++|+.+|++++.+..... +.+....++..+|.+|...|+
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 8899999999999999999999999999999999988764 467888999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 004851 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (727)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (727)
+++|+.++++++.+.... .+.+....++..+|.+|...|++++|+.+|++++.+.+.. +.......++..+|.+|.
T Consensus 199 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHH
Confidence 999999999999987763 3456778899999999999999999999999999999876 455566678999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004851 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
..|++++|+.+|++++.+...... ......++..+|.++...|++++|+.+|++++.+...... .+....++..+|
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la 350 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLG 350 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHH
Confidence 999999999999999999887633 3445788999999999999999999999999999877643 456677999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHH
Q 004851 650 GTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
.+|..+|++++|+.+|++++.+..
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999853
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.96 E-value=5.8e-26 Score=234.19 Aligned_cols=312 Identities=19% Similarity=0.222 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004851 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
...+...|..++..|++++|+.+|++++... +.++.....++..+|.++...|++++|+.++++++.+.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 4457778999999999999999999999874 45555556779999999999999999999999999997765 2
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----------------
Q 004851 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD----------------- 407 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~----------------- 407 (727)
+.+....++..+|.++...|++++|+.++++++.+.+...+ ....+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 34667889999999999999999999999999999988753 34556789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (727)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (727)
+++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+..... +.+....++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence 99999999999998888888888899999999999999999999999999999987754 3456677999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 004851 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (727)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (727)
...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 99999999999999999998763 3456678899999999999999999999999999998876 4555667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 565 GVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
|.+|...|++++|..+|++++.+.+..
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876553
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2.5e-25 Score=242.65 Aligned_cols=351 Identities=15% Similarity=0.090 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHHH----cCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 004851 265 VMCLHVIAAIYCS----LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLE 336 (727)
Q Consensus 265 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 336 (727)
+.+++.+|.+|.. .+++++|+.+|+++++.. + ..+++.||.+|.. .+++++|+.+|+++.+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-------Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 6778999999999 899999999999998652 2 2358899999999 9999999999999986
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCH
Q 004851 337 VQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDH 408 (727)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~ 408 (727)
. ....+++.||.+|.. .+++++|+.+|+++.+.. . ..++..+|.+|.. .+++
T Consensus 108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----R------DSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHHcCCCCCCCH
Confidence 5 355788999999998 889999999999997652 1 3679999999998 8899
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (727)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (727)
++|+.+|+++... ....+++.+|.+|.. .+++++|+.+|+++++. ....++..+|.+|
T Consensus 168 ~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y 229 (490)
T 2xm6_A 168 VMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
Confidence 9999999998752 235788999999998 89999999999999864 2357889999999
Q ss_pred HH----cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCcc
Q 004851 485 NR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQST 556 (727)
Q Consensus 485 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (727)
.. .+++++|+.+|+++++. + ...++..+|.+|.. .+++++|+.+|+++.+. +.
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~------~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~~--- 290 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQ------G-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----GN--- 290 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTT------T-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----TC---
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC------C-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----CC---
Confidence 97 89999999999999865 1 24578899999998 89999999999999754 11
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH
Q 004851 557 VAGIEAQMGVMYYML-----GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---SINEAVELFEEARS 628 (727)
Q Consensus 557 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~ 628 (727)
..+++.+|.+|... +++++|+.+|+++++. . ...+++.+|.+|...| ++++|+.+|+++++
T Consensus 291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 45788999999998 9999999999999874 1 2468899999999876 89999999999987
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCCh
Q 004851 629 ILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRV 700 (727)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~ 700 (727)
. ....+++.||.+|.. .+++++|+.+|+++++. ....++++||.+|.. .+++
T Consensus 360 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 360 K----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCH
Confidence 5 235689999999999 89999999999999863 236789999999999 8999
Q ss_pred hHHHHHHHHHHHHHh
Q 004851 701 RSRKAQSLETLLDAN 715 (727)
Q Consensus 701 ~~A~~~~l~~al~~~ 715 (727)
++|. .+|+++++.+
T Consensus 420 ~~A~-~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAW-AWFDTASTND 433 (490)
T ss_dssp HHHH-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHCC
Confidence 9999 9999999998
No 22
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.96 E-value=2.4e-25 Score=229.51 Aligned_cols=309 Identities=16% Similarity=0.172 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC
Q 004851 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD-PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (727)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (727)
..++..|.++...|++++|+.+|+++++.. +.+ .....++..+|.++...|++++|+.++++++.+..... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence 357889999999999999999999999982 112 22367899999999999999999999999999987765 3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------
Q 004851 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------------------- 447 (727)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 447 (727)
....+.++..+|.++...|++++|+.++.+++.+....++.+..+.++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 355678899999999999999999999999999998888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004851 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (727)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (727)
+++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++.+.... .+......++..+|.++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence 9999999999999887764 357778899999999999999999999999999997763 34566678999999999
Q ss_pred HhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 004851 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (727)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 607 (727)
...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+...... ......++..+|
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la 310 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLG 310 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence 99999999999999999999876 555566788999999999999999999999999999887654 344677899999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 608 LACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
.++...|++++|..+|++++.+...
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=6.7e-27 Score=245.14 Aligned_cols=317 Identities=16% Similarity=0.141 Sum_probs=251.3
Q ss_pred HHHHHcCChhHHHH-HHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 004851 273 AIYCSLGQYNEAIP-VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (727)
Q Consensus 273 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (727)
.++...|+|++|+. .|++++.+. +..+......++.+|.++...|++++|+.+|+++++. +|....
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 99 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME 99 (368)
T ss_dssp -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 36777899999999 999999885 3332222334889999999999999999999999988 688889
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-
Q 004851 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE- 430 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 430 (727)
++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++...........
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 99999999999999999999999999987653 367999999999999999999999999864321111000
Q ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004851 431 ---------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCEN 499 (727)
Q Consensus 431 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (727)
....+..++.++ ..|++++|+.+|++++.. .|. ...++..+|.+|...|++++|+.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011122466666 899999999999999998 666 788999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004851 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (727)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (727)
++.+ .|....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.
T Consensus 243 al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 243 ALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 9998 23346789999999999999999999999999986543 5788999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 580 SFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 580 ~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
+|++++.+.+...+. ..+....++..+|.++...|++++|..++.++++.+.+.++
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 999999987654211 11223678999999999999999999999999998877654
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-26 Score=237.23 Aligned_cols=301 Identities=15% Similarity=0.169 Sum_probs=260.2
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
+.....+..+|..++..|++++|+.+|++++...+.... ++..++.++...|++++|+.++.+++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------CLPVHIGTLVELNKANELFYLSHKLVDL----- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------THHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------hHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence 444567889999999999999999999999998776653 3778899999999999999999999863
Q ss_pred CChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 427 QDAEVASVDCSIGDTYLSLS-RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
.|....++..+|.++...| ++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++....
T Consensus 86 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 86 -YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp -CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred -CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 3445678899999999999 999999999999987 677788999999999999999999999999999942
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++
T Consensus 157 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 157 ---------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp ---------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234567789999999999999999999999876544 5788999999999999999999999999
Q ss_pred HHHHHhCCCCc-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHH
Q 004851 586 SKLRAIGERKS-AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI 664 (727)
Q Consensus 586 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 664 (727)
.+.+..+.... +....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|..+|++++|+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHH
Confidence 98766544322 233568999999999999999999999999998 777888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHhCChh
Q 004851 665 LEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVR 701 (727)
Q Consensus 665 ~~~al~~~~~~~g~~~p~~~~~~~~La~~~-~~~g~~~ 701 (727)
|++++++ .|+...++..++.++ ...|+.+
T Consensus 293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 9999975 677888999999998 4556544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.5e-26 Score=242.44 Aligned_cols=318 Identities=16% Similarity=0.143 Sum_probs=249.5
Q ss_pred HHHHhcCHHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004851 359 AHVQALQFSEAQK-FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (727)
Q Consensus 359 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (727)
++...|+|++|+. .|.+++.+.+..... .+..++.+|.++...|++++|+.+|++++. ..|....++..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLR----DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ------QDPKHMEAWQY 103 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTT----TCSSHHHHHHHHHHTTCHHHHHHHHHHHHH------SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCccc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHH
Confidence 5666789999999 999998776544311 123478999999999999999999999985 34566788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC-----
Q 004851 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP----- 512 (727)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 512 (727)
+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+.........
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999999999998 6888899999999999999999999999999987432100000
Q ss_pred --hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004851 513 --PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (727)
Q Consensus 513 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (727)
.......+..++.++ ..|++++|+.+|++++.+.+... ...++..+|.+|...|++++|+.+|++++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 247 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-- 247 (368)
T ss_dssp ----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 000011122466666 89999999999999999866521 25788899999999999999999999999862
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004851 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
+....++..+|.++...|++++|+.+|++++.+ +|....++..+|.+|...|++++|+.+|++++.
T Consensus 248 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 248 ------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223578999999999999999999999999998 788889999999999999999999999999999
Q ss_pred HHHHhcC---CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 671 IREEKLG---TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 671 ~~~~~~g---~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.....+ ..++....++..||.+|...|++++|. ..++++++..+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~ 362 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDLSTLLT 362 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCHHHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHHHHHHH
Confidence 8643311 122334789999999999999999999 999988887665
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-25 Score=231.60 Aligned_cols=295 Identities=16% Similarity=0.112 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004851 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 310 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
.+..+|..+...|++++|+.+|++++.. +|....++..++.++...|++++|+.++++++...+...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----- 90 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP----- 90 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----
Confidence 3778999999999999999999999988 677788888999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 390 EEAADRRLMGLICETKG-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (727)
Q Consensus 390 ~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (727)
.++..+|.++...| ++++|+.+|++++. ..|....++..+|.++...|++++|+.+|++++..
T Consensus 91 ---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 154 (330)
T 3hym_B 91 ---VSWFAVGCYYLMVGHKNEHARRYLSKATT------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL------- 154 (330)
T ss_dssp ---HHHHHHHHHHHHSCSCHHHHHHHHHHHHT------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 56999999999999 99999999999875 34555678999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
.|....++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.++++++.+.+
T Consensus 155 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 155 -MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp -TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 67677888899999999999999999999999872 33467899999999999999999999999999986
Q ss_pred hCCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004851 549 DAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (727)
Q Consensus 549 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 626 (727)
...... +....++..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 553221 2334688899999999999999999999999872 123568999999999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHH-HHcCChH
Q 004851 627 RSILEQECGPYHPDTLGVYSNLAGTY-DAIGRLD 659 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 659 (727)
+++ .|+...++..++.++ ...|+.+
T Consensus 297 l~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred Hcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 998 888888999999998 4556543
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.2e-23 Score=221.58 Aligned_cols=349 Identities=12% Similarity=0.075 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH--HHHHHHhcCHHHHH-----------HHHHH
Q 004851 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYL--AEAHVQALQFSEAQ-----------KFCQM 375 (727)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~-----------~~~~~ 375 (727)
....+-...+...+++++|...++++.+....+ +.+++.. .++.+ .......+++..+. ..+++
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~--~~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQM--EEDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--CCCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh--ccchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 335555666788999999999999987765432 1123322 22222 22223344444444 45544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004851 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY 455 (727)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 455 (727)
.-...... ........++.+|.++...|++++|+.+|++++.+....++.+..+.++..+|.+|...|++++|+.++
T Consensus 90 i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 90 IDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 32211111 111223346679999999999999999999999888887888889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHH
Q 004851 456 QKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ 535 (727)
Q Consensus 456 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 535 (727)
+++++++....+ ..+..+.++..+|.+|...|++++|+.+|++++.+.+.. .+.+..+.++.++|.+|..+|++++
T Consensus 167 ~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 167 RQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999887632 256778999999999999999999999999999998874 3567778899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004851 536 AIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (727)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (727)
|+.+|++++.+.+.. +..+..+.++..+|.+|..+|++++|+.++++++.+....++.. ....+..+|.++...|+
T Consensus 243 A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 243 AIPYFKRAIAVFEES-NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI---YLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCc
Confidence 999999999998876 44355688999999999999999999999999999988765432 23346779999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
+ ..+++++..+++... .+....++..+|.+|..+|++++|..+|++++.+.+++..
T Consensus 319 ~----~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 319 E----EAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp H----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred H----HHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5 445555555554422 5777889999999999999999999999999999876654
No 28
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.3e-23 Score=221.47 Aligned_cols=354 Identities=12% Similarity=0.063 Sum_probs=275.7
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHcCChhHHH-----------
Q 004851 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-AAIYCSLGQYNEAI----------- 285 (727)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~----------- 285 (727)
++.....+.....+...++ +++|..+++++...+... ..+.+....+..+ .......+++..+.
T Consensus 9 ~~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~ 84 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchh
Confidence 3455666777777888887 999999999988776543 2333333222222 22223344455554
Q ss_pred HHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004851 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ 365 (727)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 365 (727)
..+++.-... ...........++.+|.++...|++++|+.+|++++.+.... .+.+..+.++..+|.+|...|+
T Consensus 85 ~~~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 85 DLLLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCC
Confidence 5555432221 111122233456779999999999999999999999886553 2235578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 004851 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (727)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (727)
+++|+.++++++.+.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+
T Consensus 159 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 99999999999999988753 24566788999999999999999999999999999998888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH
Q 004851 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSS 525 (727)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 525 (727)
|++++|+.+|++++.+.+... +.|....++..+|.+|...|++++|+.++++++.+..... .+.....+..++.
T Consensus 238 g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKS 311 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Confidence 999999999999999988765 1278899999999999999999999999999999977642 2333344778999
Q ss_pred HHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004851 526 IYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
++...|++ ..+.+++...... +.......++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus 312 ~~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 312 LYLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999995 4455555555554 445566778899999999999999999999999998776654
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=2.1e-25 Score=233.57 Aligned_cols=305 Identities=14% Similarity=0.125 Sum_probs=239.0
Q ss_pred HHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004851 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ 365 (727)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 365 (727)
..+..+.... +.++......++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|+
T Consensus 48 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~ 114 (365)
T 4eqf_A 48 SASEKGYYFH-----TENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENEN 114 (365)
T ss_dssp -----CCCCC-----SSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhcc-----cCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCC
Confidence 4455555443 2222223345889999999999999999999999998 78889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Q 004851 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDT 441 (727)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~ 441 (727)
+++|+.+|++++.+.|.. ..++..+|.+|...|++++|+.+|++++.+........ .....+..+|.+
T Consensus 115 ~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 115 EQAAIVALQRCLELQPNN--------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 999999999999987554 36799999999999999999999999987533222111 123445567999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHH
Q 004851 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG 519 (727)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 519 (727)
+...|++++|+.+|++++.+ .|. ...++..+|.+|...|++++|+.+|++++.+ .|....+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~ 249 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQ--------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------RPEDYSL 249 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHH--------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHH
T ss_pred HhhhhhHHHHHHHHHHHHHh--------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHH
Confidence 99999999999999999998 566 6789999999999999999999999999998 3334678
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc---
Q 004851 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS--- 596 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 596 (727)
+..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+......+
T Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 9999999999999999999999999986554 578999999999999999999999999998776443211
Q ss_pred -hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 597 -AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 597 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.....+|..++.++...|+.+.|..+..+.+..+.+.++
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~ 362 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFN 362 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTT
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcC
Confidence 123578999999999999999999988887766554443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.9e-24 Score=226.28 Aligned_cols=285 Identities=18% Similarity=0.121 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
..++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+ .|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 131 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------QPN 131 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence 35889999999999999999999999864 4555788999999999999999999999999998 788
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004851 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP-PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
...++..+|.+|...|++++|+.+|++++.+......... .......+..+|.++...|++++|+.+|++++.+.+...
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 8899999999999999999999999999998332100000 001133445669999999999999999999999865421
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004851 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
...++..+|.+|...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++++
T Consensus 212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 24688899999999999999999999999872 223578999999999999999999999999999
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHhCChhHHHHHH
Q 004851 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD----VDDEKRRLAELLKEAGRVRSRKAQS 707 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~----~~~~~~~La~~~~~~g~~~~A~~~~ 707 (727)
+|....++..+|.+|..+|++++|+.+|++++.+.....++.++. ...++..|+.++...|+.+.+. ..
T Consensus 277 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 349 (365)
T 4eqf_A 277 ------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ-AA 349 (365)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred ------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH-HH
Confidence 888899999999999999999999999999999976544433222 3678999999999999999998 66
Q ss_pred HHHHHH
Q 004851 708 LETLLD 713 (727)
Q Consensus 708 l~~al~ 713 (727)
.++.+.
T Consensus 350 ~~~~l~ 355 (365)
T 4eqf_A 350 NLGDLD 355 (365)
T ss_dssp HTTCCG
T ss_pred HHhhHH
Confidence 655433
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=9.3e-24 Score=216.99 Aligned_cols=282 Identities=16% Similarity=0.119 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
..++.+|..+...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.. .|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcC
Confidence 34788999999999999999999999763 3455678899999999999999999999999998 677
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH--------------HH-HHHhcccHHHHH
Q 004851 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV--------------SS-IYESMNELEQAI 537 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~ 537 (727)
...++..+|.++...|++++|+.++++++...... ...+..+ +. ++...|++++|+
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---------TTC--------------------CCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 88999999999999999999999999999874331 1122222 44 588899999999
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHH
Q 004851 538 KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSIN 617 (727)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 617 (727)
.++++++...+.. ..++..+|.++...|++++|+.++++++... +....++..+|.++...|+++
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 159 TLLHAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHH
Confidence 9999999886543 4788999999999999999999999999862 223578999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHH
Q 004851 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA----NPDVDDEKRRLAEL 693 (727)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~----~p~~~~~~~~La~~ 693 (727)
+|+.+|+++++. .|....++..+|.+|...|++++|+.+|++++.+.....+.. ......++..++.+
T Consensus 224 ~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 224 EALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 999999999998 788888999999999999999999999999998752111100 01178899999999
Q ss_pred HHHhCChhHHHHHHHHHHHHHhhh-cCCC
Q 004851 694 LKEAGRVRSRKAQSLETLLDANSR-VNND 721 (727)
Q Consensus 694 ~~~~g~~~~A~~~~l~~al~~~p~-~~~~ 721 (727)
+...|++++|. ..++++++..|. ..-+
T Consensus 296 ~~~~g~~~~A~-~~~~~~l~~~~~~~~~~ 323 (327)
T 3cv0_A 296 LNVMNRPDLVE-LTYAQNVEPFAKEFGLQ 323 (327)
T ss_dssp HHHTTCHHHHH-HHTTCCSHHHHHHTTSS
T ss_pred HHhcCCHHHHH-HHHHHHHHhcchhhhHH
Confidence 99999999999 999999999888 5433
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=6.5e-22 Score=207.93 Aligned_cols=337 Identities=13% Similarity=0.069 Sum_probs=259.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HHHHcCChhHHH---------HHHHHhcccchhcc
Q 004851 231 LISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA--IYCSLGQYNEAI---------PVLEQSIEIPVIEE 299 (727)
Q Consensus 231 ~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~---------~~~~~al~~~~~~~ 299 (727)
....++ +++|+.+++++...+.... .+.... .++.+-. .....+.+..+. ..++..-...
T Consensus 22 ~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---- 92 (378)
T 3q15_A 22 MIRQFS-VPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ---- 92 (378)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG----
T ss_pred HHHHcC-HHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC----
Confidence 356765 9999999999877665442 223332 2332222 222234444444 5555432221
Q ss_pred CccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004851 300 GQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 300 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
.+.........++.+|..+...|++++|+.+|++++.+.... .+.+..+.++..+|.+|...|++++|+.++++++.+
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 170 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111223334467889999999999999999999999986553 224668889999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004851 380 HKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKAL 459 (727)
Q Consensus 380 ~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 459 (727)
.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.++++++
T Consensus 171 ~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 171 YQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 987653 1345678899999999999999999999999999998888888889999999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHH
Q 004851 460 TAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (727)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (727)
.+.+... +|....++..+|.+|...|++++|+.++++++.+..... .+.....+..++.++...++. ..
T Consensus 250 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~----~~ 318 (378)
T 3q15_A 250 KVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE----RK 318 (378)
T ss_dssp HHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH----HH
T ss_pred HHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH----HH
Confidence 9988765 677799999999999999999999999999999976642 233344578888999888883 33
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 540 LQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 540 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
+.+++...... +.......++..+|.+|...|++++|..+|++++.+.+++
T Consensus 319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444333 3444556778899999999999999999999999986654
No 33
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=2e-22 Score=211.77 Aligned_cols=336 Identities=12% Similarity=0.093 Sum_probs=257.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--HHHhcCHHHHH---------HHHHHHHHHHHhcCC
Q 004851 317 TYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA--HVQALQFSEAQ---------KFCQMALDIHKDNGS 385 (727)
Q Consensus 317 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~ 385 (727)
.+...+++++|...++++......+- .+... ..++.+... ....+.+..+. ..+++.-......
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~-~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 95 (378)
T 3q15_A 21 KMIRQFSVPDAEILKAEVEQDIQQME--EDQDL-LIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL-- 95 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHH-HHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHH-HHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence 34789999999999999876643321 12222 233333222 11222322222 3333322111111
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (727)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (727)
+.......++.+|..+...|++++|+.+|++++.+....++.+..+.+++.+|.+|...|++++|+.+++++++++...
T Consensus 96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 1122234677899999999999999999999999888888888999999999999999999999999999999998765
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004851 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
.+ ..+..+.++..+|.+|...|++++|+.+|++++.+.+.. .+....+.++.++|.+|..+|++++|+.+|++++.
T Consensus 175 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 175 PL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 134678899999999999999999999999999998764 34556788999999999999999999999999999
Q ss_pred HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC---HHHHHHH
Q 004851 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS---INEAVEL 622 (727)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~ 622 (727)
+.... +.+.. ..++..+|.+|..+|++++|+.++++++.+....+... ....+..++.++...++ +.+|+.+
T Consensus 251 ~~~~~-~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 251 VSREK-VPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF---YKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHH-CGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---HHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHhh-CChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88765 33333 78899999999999999999999999999876655432 33456788889988888 5555555
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 623 FEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 623 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
+++ ... .+....++..+|.+|...|++++|..+|++++++.+++.
T Consensus 326 ~~~-------~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 326 FEK-------KNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHH-------TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-------CCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 544 222 567777889999999999999999999999999876654
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.9e-23 Score=214.72 Aligned_cols=283 Identities=14% Similarity=0.117 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004851 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
....++.+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++...+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--- 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--- 88 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---
Confidence 3445889999999999999999999999998 68888999999999999999999999999999986543
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH--------------HH-HHHHcCCHHHH
Q 004851 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--------------GD-TYLSLSRYDEA 451 (727)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A 451 (727)
..++..+|.++...|++++|+.+|++++.... .....+..+ +. ++...|++++|
T Consensus 89 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 89 -----IAVHAALAVSHTNEHNANAALASLRAWLLSQP------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST------TTTTC--------------------CCTTSHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 36789999999999999999999999976422 112222222 44 58889999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcc
Q 004851 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (727)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (727)
+.++++++.. .|....++..+|.++...|++++|+.++++++... +....++..+|.++...|
T Consensus 158 ~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 158 RTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------PDDAQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcC
Confidence 9999999988 67788999999999999999999999999999982 334678999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc----hhHHHHHHHHH
Q 004851 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----AFFGVALNQMG 607 (727)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la 607 (727)
++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.+.+....... .....++..+|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHH
Confidence 9999999999999986543 467889999999999999999999999988544222211 11567899999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 608 LACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.++...|++++|..++++++..+....+
T Consensus 294 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999998766544
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.7e-22 Score=220.97 Aligned_cols=425 Identities=12% Similarity=0.008 Sum_probs=310.8
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004851 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (727)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (727)
..+|....+|..++.. ...|+ +++|+..|++++..+ |.....|..++..+...|++++|+.+|++++..
T Consensus 7 ~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 7 EENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4578899999999984 77886 999999999999764 455778999999999999999999999999988
Q ss_pred chhccCccchHHHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-------
Q 004851 295 PVIEEGQEHALAKFAGHMQLGD-TYAMLGQLENSLM----CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ------- 362 (727)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------- 362 (727)
. + +. ..|..++. +....|++++|.+ .|++++.. .|. ++....+|...+.....
T Consensus 76 ~-----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 76 V-----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp C-----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSST
T ss_pred C-----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccH
Confidence 5 2 22 23666664 4456788888776 55555543 232 34556777777776655
Q ss_pred --hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHhCCC
Q 004851 363 --ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC-------------ETKGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 363 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
.|+++.|..+|++++.. |.. .. ...+....... ...+++..|...+............
T Consensus 141 ~~~~~~~~a~~~y~~al~~-P~~----~~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVN-PMI----NI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp THHHHHHHHHHHHHHHTTS-CCT----TH--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhHHHHHHHHHHHHHhc-hhh----hH--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999983 221 11 11222221111 1345677777766653322222221
Q ss_pred -----Ch-------hHHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-
Q 004851 428 -----DA-------EVASVDCSIGDTYLS----LSRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR- 486 (727)
Q Consensus 428 -----~~-------~~~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 486 (727)
.| .....|......... .++. ..++..|++++.. .|....+|..+|.++..
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~ 285 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS 285 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence 11 112344333322222 1232 4788899999998 68888999999999986
Q ss_pred ------cCChH-------HHHHHHHHHHH-HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004851 487 ------TGKLR-------ESKSYCENALR-IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 487 ------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
.|+++ +|+..|++++. + .|....++..++.++...|++++|...|++++.+.+..
T Consensus 286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 354 (530)
T 2ooe_A 286 SKLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-- 354 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--
T ss_pred chhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC--
Confidence 79987 88999998886 4 23446789999999999999999999999999863321
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHH
Q 004851 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~ 631 (727)
...+|..++.++...|++++|+.+|+++++.. + .....+...+.+ +...|++++|..+|+++++.
T Consensus 355 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~----~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-- 420 (530)
T 2ooe_A 355 ----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----R----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-- 420 (530)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----T----CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----C----CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence 13578899999999999999999999998741 1 112334444444 34689999999999999998
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004851 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLET 710 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (727)
.|+...++..++.++...|++++|..+|++++.. .+.+|. ....+.....+....|+.+.+. ..+.+
T Consensus 421 ------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r 488 (530)
T 2ooe_A 421 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKR 488 (530)
T ss_dssp ------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHH
T ss_pred ------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence 6777889999999999999999999999999974 233453 3456777788888999999999 99999
Q ss_pred HHHHhhh
Q 004851 711 LLDANSR 717 (727)
Q Consensus 711 al~~~p~ 717 (727)
+++..|+
T Consensus 489 ~~~~~p~ 495 (530)
T 2ooe_A 489 RFTAFRE 495 (530)
T ss_dssp HHHHTHH
T ss_pred HHHHCch
Confidence 9999996
No 36
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.8e-22 Score=205.65 Aligned_cols=282 Identities=17% Similarity=0.231 Sum_probs=227.9
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
.++|..+.++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.+|...|++++|+.++++++.+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999887777899999999999999999999999999999999976
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ-QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (727)
... +.+.+....++..+|.++...|++++|+.+|++++.+.....+. .+....++..+|.++...|++++|+.+|+++
T Consensus 101 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 101 KTL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 642 23457778999999999999999999999999999998654222 3456778999999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCcc------HHHHHHHHHHHHHHcCC
Q 004851 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPD------TLGVYSNLAGTYDAIGR 657 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~~~~~~g~ 657 (727)
+.+.........+....++..+|.++...|++++|+.+|++++.+..... +...+. ....+..++..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 99988876666677888999999999999999999999999998865421 111111 23344555666667778
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+.+|...+++++. .+|....++..+|.+|...|++++|. .+|++++++.|+
T Consensus 260 ~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~~~ 310 (311)
T 3nf1_A 260 FGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAE-TLEEAAMRSRKQ 310 (311)
T ss_dssp SCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHhhc
Confidence 8888888888775 37999999999999999999999999 999999999874
No 37
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.91 E-value=4.5e-21 Score=201.19 Aligned_cols=312 Identities=13% Similarity=0.074 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 004851 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (727)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (727)
...++..+|.++...|++++|+.++++++...+.. .....+.++..+|.++...|++++|+.++.+++.+....+..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 45677888999999999999999999999876422 223456678999999999999999999999999998888777
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004851 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
.....++..+|.++...|++++|+.++++++.+.....+..++....++..+|.++...|++++|+.++++++.+.....
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 77788899999999999999999999999999988876555577888999999999999999999999999999976532
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
++....++..+|.++...|++++|+.++++++.+.+.. +... ........++.++...|++++|..++++++..
T Consensus 170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 23356788999999999999999999999999987654 2221 11222224566788999999999999988753
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004851 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
. ..........+..+|.++...|++++|..++++++........ .+....++..+|.++...|++++|...|++
T Consensus 245 ~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 245 E----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp C----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 1111222346788999999999999999999999998776422 234456889999999999999999999999
Q ss_pred HHHHHHH
Q 004851 668 VVGIREE 674 (727)
Q Consensus 668 al~~~~~ 674 (727)
++.+...
T Consensus 319 al~~~~~ 325 (373)
T 1hz4_A 319 ALKLANR 325 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9988653
No 38
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=8.4e-22 Score=200.75 Aligned_cols=279 Identities=19% Similarity=0.176 Sum_probs=228.1
Q ss_pred hCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (727)
.+.++|....++..+|.++...|++++|+.++++++.+............+.++..+|.++...|++++|+.+|++++.+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999887765556777889999999999999999999999999988
Q ss_pred HHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004851 422 MIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (727)
Q Consensus 422 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (727)
.... .+.+....++..+|.+|...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7665 66788899999999999999999999999999999998887777899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC----CCC----ccHHHHHHHHHHHHHHc
Q 004851 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP----GQQ----STVAGIEAQMGVMYYML 571 (727)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~----~~~~~~~~~la~~~~~~ 571 (727)
++.+..... +.+.+....++..+|.+|...|++++|+.++++++.+.+... ... ......+..++..+...
T Consensus 179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 999987753 344677788999999999999999999999999999865420 000 11233344555556666
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
+.+.+|...+.++... .+....++..+|.+|...|++++|+.+|++++++
T Consensus 258 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777777777776653 4557789999999999999999999999999988
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=193.78 Aligned_cols=237 Identities=16% Similarity=0.155 Sum_probs=211.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004851 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
..+..+..+|.++...|++++|+.+|++++.. . ....++..+|.++...|++++|+.++++++.+....
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-- 71 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-- 71 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--
Confidence 45678899999999999999999999999998 3 556889999999999999999999999999997553
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004851 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (727)
....+....++..+|.++...|++++|+.+|++++.+.+. +.++...|++++|+..+++++..
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch---------------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 2234445789999999999999999999999999987432 45677888999999999998874
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004851 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
.+....++..+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999999998 78888899999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+ +|....++..+|.++...|++++|. ..|+++++++|.
T Consensus 201 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~ 239 (258)
T 3uq3_A 201 EK--------DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKDAE 239 (258)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred Hh--------CHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhChh
Confidence 87 5777889999999999999999999 999999999954
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.2e-22 Score=200.97 Aligned_cols=263 Identities=9% Similarity=-0.016 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004851 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
..++.+|.+++..|++++|+.+|++++...|.... ++..+|.++...|++++|+.+|.+++. ...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhH
Confidence 56788999999999999999999999998876543 489999999999999999999999976 1233344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
...++..+|.++...|++++|+.+|+++++. .|....++..+|.+|...|++++|+.+|++++.+
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence 4778999999999999999999999999998 7888899999999999999999999999999887
Q ss_pred CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 004851 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISK 587 (727)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 587 (727)
.+....++..+|......+++++|+.+|++++++.+.. ..++..+|.++...|+ +++|+.+|++++++
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 33446789999944455569999999999999987655 4678899999999999 99999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004851 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (727)
.....+........++..+|.+|...|++++|+.+|++++++ +|+...++..++.+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcccc
Confidence 765443322335678999999999999999999999999999 8888888888877765443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=1.2e-22 Score=211.14 Aligned_cols=241 Identities=11% Similarity=0.037 Sum_probs=214.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHh
Q 004851 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE 505 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 505 (727)
..|....++..+|.++...|++++|+..|++++.+ +|....+|+.+|.++..+|+ +++|+.+|++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 46778899999999999999999999999999998 89999999999999999997 99999999999999
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
.|....+|+++|.++..+|++++|+..|++++.+.+.. ..+|+++|.++..+|++++|+.+|++++
T Consensus 162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45567899999999999999999999999999997766 5789999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--C
Q 004851 586 SKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEA-----VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG--R 657 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 657 (727)
++ .+....+|+++|.++.. .|.+++| +.+|++++.+ +|+...+|++++.++...| +
T Consensus 228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence 97 23356899999999999 5555777 5999999999 8999999999999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC--------C-hhHHHHHHHHHH-HHHhhh
Q 004851 658 LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG--------R-VRSRKAQSLETL-LDANSR 717 (727)
Q Consensus 658 ~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g--------~-~~~A~~~~l~~a-l~~~p~ 717 (727)
+++|+..++++ + .+|+...++..||.+|..+| + +++|+ .+|+++ ++++|.
T Consensus 292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTI 351 (382)
T ss_dssp CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGG
T ss_pred hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCch
Confidence 89998888765 2 26778889999999999985 2 58999 999999 999986
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=3.5e-22 Score=207.51 Aligned_cols=253 Identities=11% Similarity=0.006 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCC
Q 004851 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNKGE 468 (727)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 468 (727)
....++..+|.++...|++++|+..|++++.+ .|....+|+.+|.++..+|+ +++|+.+|++++.+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------- 161 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------- 161 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-------
Confidence 34567899999999999999999999999864 67778899999999999997 99999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
+|....+|+++|.++..+|++++|+.+|++++.+ .|....+|.++|.++..+|++++|+.+|++++++.+
T Consensus 162 -~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l---------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 162 -QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ---------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999 455678999999999999999999999999999977
Q ss_pred hCCCCCccHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC--CHHHHH
Q 004851 549 DAPGQQSTVAGIEAQMGVMYYM-LGNYSDS-----YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY--SINEAV 620 (727)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~ 620 (727)
.. ..+|+++|.++.. .|.+++| +.+|++++.+ .+....+|+++|.++...| ++++|+
T Consensus 232 ~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 232 RN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp TC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred CC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 66 5789999999999 5555888 5889999986 2334679999999999988 689999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHHHHhcCCCChhHHHHHHHH
Q 004851 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG--------R-LDDAIEILEFV-VGIREEKLGTANPDVDDEKRRL 690 (727)
Q Consensus 621 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~g~~~p~~~~~~~~L 690 (727)
+.++++ +. +|+...++..||.+|..+| + +++|+.+|+++ +++ +|.....|..+
T Consensus 297 ~~~~~~-~~--------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~~~ 359 (382)
T 2h6f_A 297 NQLLDL-QP--------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWRYI 359 (382)
T ss_dssp HHHHHH-TT--------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHHHH
T ss_pred HHHHHh-cc--------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHHHH
Confidence 888776 43 7888889999999999985 2 58899999988 654 79999999999
Q ss_pred HHHHHHh
Q 004851 691 AELLKEA 697 (727)
Q Consensus 691 a~~~~~~ 697 (727)
+..+..+
T Consensus 360 ~~~l~~~ 366 (382)
T 2h6f_A 360 GRSLQSK 366 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888765
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.4e-22 Score=202.40 Aligned_cols=247 Identities=14% Similarity=0.092 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
..++.+|.+++..|++++|+.+|+++++. .|....++..+|.+|...|++++|+.++++++.. ..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK------VNA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT------SCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------cCc
Confidence 45678999999999999999999999987 6777779999999999999999999999999984 222
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004851 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
......++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 33447789999999999999999999999999987654 368899999999999999999999999875
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Q 004851 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVV 669 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 669 (727)
.+....++..+|......+++++|+.+|++++++ .|....++..+|.++...|+ +++|+..|++++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 2234678999995555566999999999999999 78888899999999999999 999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 670 GIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
++......+..+....++..+|.+|...|++++|+ .+|+++++++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~ 253 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD-AAWKNILALDPT 253 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCcc
Confidence 98754322112235688999999999999999999 999999999997
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.1e-21 Score=189.10 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=218.3
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
+..+.++..+|.++...|++++|+.+|++++... .. ..++..+|.++...|++++|+.+|.+++.+.....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3467889999999999999999999999999987 22 25799999999999999999999999998776553
Q ss_pred -CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 427 -QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 427 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
..+....++..+|.++...|++++|+.+|++++.+ .+. +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 34445789999999999999999999999999997 343 45677888999999999999887
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
.+....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56678899999999999999999999999999986554 4788999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004851 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (727)
... +....++..+|.++...|++++|+.+|++++++...... .|....++..++.+
T Consensus 201 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred HhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 862 223578999999999999999999999999999554433 37777777777654
No 45
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.89 E-value=3e-20 Score=194.94 Aligned_cols=313 Identities=11% Similarity=0.001 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Q 004851 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (727)
Q Consensus 264 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (727)
...++..+|.++...|++++|+.++++++...+ ..++.....++..+|.++...|++++|+.++++++.+.+..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 86 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-- 86 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence 356778889999999999999999999998752 22333455678899999999999999999999999997763
Q ss_pred CCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004851 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (727)
.+......++..+|.++...|++++|+.++++++.+.+.......+..+.++..+|.++...|++++|+.++.+++.+..
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 11123456788999999999999999999999999998876654455677889999999999999999999999998766
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHHHHcCChHHHHHHHHHHH
Q 004851 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV--FVRLADMYNRTGKLRESKSYCENAL 501 (727)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al 501 (727)
..+.. ....++..+|.++...|++++|..++++++.+..... .+..... ...++.++...|++++|..++++++
T Consensus 167 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 167 SYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp TSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 54433 3567889999999999999999999999998854432 2211222 2345566889999999999999887
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004851 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (727)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (727)
.... +. .......+..++.++...|++++|+..+++++...+.. +.......++..+|.++...|++++|...+
T Consensus 243 ~~~~----~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 243 KPEF----AN-NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CCCC----TT-CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCC----Cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5421 11 12223357789999999999999999999999998875 444445567889999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004851 582 KNAISKLRAIG 592 (727)
Q Consensus 582 ~~al~~~~~~~ 592 (727)
++++.+....+
T Consensus 317 ~~al~~~~~~g 327 (373)
T 1hz4_A 317 LDALKLANRTG 327 (373)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcccc
Confidence 99999876543
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=1.6e-22 Score=217.07 Aligned_cols=385 Identities=13% Similarity=0.087 Sum_probs=272.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCh---hHHHHHHHHhcccchhccCc
Q 004851 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY---NEAIPVLEQSIEIPVIEEGQ 301 (727)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 301 (727)
..+|..++..|+ +++|+.+|+++.+. +. +.+++.||.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------- 67 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL------GY-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------- 67 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH------TC-----CTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence 457888999997 99999999999764 11 34577899999999999 9999999999854
Q ss_pred cchHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004851 302 EHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (727)
+ ..+++.||.++...+ ++++|+.+|+++++. ....+++.||.+|...+...++...++..
T Consensus 68 -~----~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~ 132 (452)
T 3e4b_A 68 -S----PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----------GEGNTLIPLAMLYLQYPHSFPNVNAQQQI 132 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----------TCSSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred -C----HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 1 224888999777766 889999999999874 12238899999999888766665555544
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHH
Q 004851 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGF 453 (727)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 453 (727)
....+... ..+++.+|.+|...+.+++++............ .++. +++.+|.+|...| ++++|+.
T Consensus 133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 44443322 246899999999999777766664433332222 2232 8899999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH-H-
Q 004851 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-Y- 527 (727)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~- 527 (727)
+|+++.+. .+..+..++.||.+|... +++++|+.+|+++. .. ...+++.+|.+ +
T Consensus 201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence 99999987 566677789999999765 79999999999987 11 25678899998 4
Q ss_pred -HhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004851 528 -ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-----NYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 528 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
...+++++|+.+|+++.+. + ...+++++|.+|. .| ++++|+.+|+++. . . ...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~ 319 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA 319 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence 5689999999999999854 2 1468889999998 66 9999999999987 1 1 247
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHH
Q 004851 602 ALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 602 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 673 (727)
++++||.+|.. ..++++|+.+|+++.+. ....++++||.+|.. ..++.+|..+|+++.+.
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 89999999887 34999999999999863 224478999999985 45899999999999863
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHhhh
Q 004851 674 EKLGTANPDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 674 ~~~g~~~p~~~~~~~~La~~~~~--~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+ ..+...++.+... .++..+|. ..+++.....+.
T Consensus 388 -----g~---~~a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~~ 424 (452)
T 3e4b_A 388 -----DT---PEANDLATQLEAPLTPAQRAEGQ-RLVQQELAARGT 424 (452)
T ss_dssp -----CC---HHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred -----CC---HHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhccc
Confidence 23 3345555555433 34566677 777777666554
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.88 E-value=3.9e-21 Score=192.69 Aligned_cols=268 Identities=17% Similarity=0.136 Sum_probs=220.5
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 004851 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398 (727)
Q Consensus 319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 398 (727)
...|++++|+.+|++++++..+..+.++|..+.++..+|.++...|++++|+.++++++.+.....+...+..+.++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45789999999999999999999888889999999999999999999999999999999998877666667788899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004851 399 GLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (727)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (727)
|.++...|++++|+.+|.+++.+.... .+++....++..+|.+|...|++++|+.++++++.+++...++++|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999876554 446888999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCcc
Q 004851 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST 556 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 556 (727)
+..+|.+|...|++++|+.++++++.+......+...+.....+..++..+...+....+. .+..+...........+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999986542212223333445666777666655544443 355555555555445567
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
...++..+|.+|..+|++++|+.+|++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999864
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.4e-21 Score=187.72 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004851 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
..+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 457889999999999999999999999998 8999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Q 004851 512 PPEEIASGLTDVSSIYESM-----------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDS 580 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 580 (727)
.|....++..+|.++... |++++|+..|++++++.|.. ..++..+|.++...|++++|+..
T Consensus 69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHH
Confidence 455578899999999999 99999999999999997655 57889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH
Q 004851 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD 660 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 660 (727)
|++++++. ....++..+|.++...|++++|+..|++++++ +|+...++..+|.++...|++++
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC------
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHH
Confidence 99999972 13578899999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHH
Q 004851 661 AIEILEFVV 669 (727)
Q Consensus 661 A~~~~~~al 669 (727)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999999875
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=4.7e-22 Score=213.35 Aligned_cols=352 Identities=14% Similarity=0.061 Sum_probs=250.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCC
Q 004851 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL---ENSLMCYTTGLEVQKQVLGET 345 (727)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~ 345 (727)
..+|..++..|++++|+.+|+++.+.. ++ .+++.||.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-------~~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-------YS----EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-------CC----TGGGTCC---------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-------CH----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--------
Confidence 347899999999999999999997642 12 2377899999999999 9999999999854
Q ss_pred CchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004851 346 DPRVGETCRYLAEAHVQAL-----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (727)
...+++.||.++...+ ++++|+.+|++++... .. .+++.||.+|...+...++...+.....
T Consensus 68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3467889999776665 8899999999998732 11 2488999999988765555444433332
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC---ChHHHHHHH
Q 004851 421 TMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG---KLRESKSYC 497 (727)
Q Consensus 421 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 497 (727)
.... ....+++.+|.+|...+.++++............. .+|. +++.||.+|...| ++++|+.+|
T Consensus 135 a~~~-----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 135 WQAA-----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDI---CYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp HHHH-----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTT---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHC-----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHH---HHHHHHHHHHHcCCcccHHHHHHHH
Confidence 2221 22457889999999999777776664433332211 1333 8999999999999 999999999
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-H--HH
Q 004851 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESM----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-Y--YM 570 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~--~~ 570 (727)
+++... + +..+..++.+|.+|... +++++|+.+|+++. +.. ..+++++|.+ | ..
T Consensus 203 ~~aa~~------g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~-------~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 203 EAGVSR------G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY-------PASWVSLAQLLYDFPE 263 (452)
T ss_dssp HHHHHT------T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-------THHHHHHHHHHHHSGG
T ss_pred HHHHHC------C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-------HHHHHHHHHHHHhCCC
Confidence 999987 2 22355668899999765 79999999999987 433 3678899998 4 46
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004851 571 LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-----SINEAVELFEEARSILEQECGPYHPDTLGVY 645 (727)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (727)
.+++++|+.+|+++.+. ....++++||.+|. .| ++++|+.+|+++. . ....++
T Consensus 264 ~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----------g~~~A~ 321 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----------REVAAD 321 (452)
T ss_dssp GCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----------TCHHHH
T ss_pred CCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----------CCHHHH
Confidence 89999999999999863 13578999999998 66 9999999999987 2 234589
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhh
Q 004851 646 SNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 646 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p 716 (727)
++||.+|.. ..++++|+.+|+++.+ .....+.++||.+|.. ..++.+|. .+|+++.+..+
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~~g~ 389 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHCCC
Confidence 999999887 4499999999999985 2345688999999985 45899999 99999887543
No 50
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=4.8e-20 Score=202.94 Aligned_cols=387 Identities=9% Similarity=-0.024 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004851 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
|....+|..++.. ...|++++|+..|++++... |... ..|..++..+...|++++|...|++++..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~---- 75 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK---- 75 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence 4456778888874 78999999999999999986 3333 35899999999999999999999999988
Q ss_pred hCCCCchHHHHHHHHHH-HHHHhcCHHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---------cCC
Q 004851 342 LGETDPRVGETCRYLAE-AHVQALQFSEAQK----FCQMALDIHKDNGSPASLEEAADRRLMGLICET---------KGD 407 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~---------~g~ 407 (727)
.|. ..+|..++. +....|++++|.+ .|++++...+... .. ..+|...+..... .|+
T Consensus 76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence 564 457777775 4445688877766 6666665432211 11 2445566665544 789
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCC---CCh
Q 004851 408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGE---NHP 471 (727)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~~ 471 (727)
++.|..+|++++.. +.. .....+....... ...+++..|...+............. -.|
T Consensus 146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 99999999998751 111 1122222222211 13456777776666543332222100 011
Q ss_pred -------hHHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh-------
Q 004851 472 -------AVASVFVRLADMYNRT----GKL----RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES------- 529 (727)
Q Consensus 472 -------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------- 529 (727)
.....|.......... ++. ..++..|++++... |....+|..+|.++..
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhh
Confidence 1123444433322221 233 47889999999983 4457789999999886
Q ss_pred cccHH-------HHHHHHHHHHH-HHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004851 530 MNELE-------QAIKLLQKALK-IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 530 ~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
.|+++ +|+..|++++. +.+.. ..++..++.++...|++++|...|++++.+ . +.....
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~ 357 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI----E---DIDPTL 357 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----S---SSCHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----c---ccCchH
Confidence 79877 88999998886 44332 578899999999999999999999999985 1 111235
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004851 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
+|..++.++...|++++|+.+|++|++. .|.....+...+.+ +...|++++|..+|+++++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-------- 421 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------- 421 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--------
Confidence 8999999999999999999999999986 44444455555555 446999999999999999874
Q ss_pred hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|+...++..++.++...|+.++|. ..|++++...|.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~ 457 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSL 457 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence 666788999999999999999999 999999987553
No 51
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.88 E-value=1.3e-20 Score=188.77 Aligned_cols=269 Identities=17% Similarity=0.221 Sum_probs=222.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004851 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (727)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (727)
....|++++|+.+|+++++++.+..+.++|....++..+|.+|...|++++|+.+|++++.+.+... +.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence 4567999999999999999999998888899999999999999999999999999999999987643 345677889999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 004851 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (727)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (727)
.+|.+|...|++++|+.+|++++.+.....+.. +....++..+|.+|...|++++|+.+|++++.+.........+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999999999987654443 4667889999999999999999999999999998888776677788
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004851 601 VALNQMGLACVQRYSINEAVELFEEARSILEQEC-GPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 601 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
.++..+|.++...|++++|+.+|++++.+..... +..++....++..++..+...+....+.. +..+.... ...+..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 247 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWY-KACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHH-HhcCCC
Confidence 9999999999999999999999999999866543 22345555577777777776666555544 44444433 344567
Q ss_pred ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+|....++..||.+|...|++++|. .+|++++++
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 281 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAH-TLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 8999999999999999999999999 999999875
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=1.9e-21 Score=186.75 Aligned_cols=200 Identities=18% Similarity=0.146 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++++.|..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 444578899999999999999999999999988 45557889999999999999999999999999997665
Q ss_pred CCCCccHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHH
Q 004851 551 PGQQSTVAGIEAQMGVMYYML-----------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEA 619 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 619 (727)
..++..+|.++... |++++|+..|++++++ .+....++..+|.++...|++++|
T Consensus 73 -------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 73 -------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp -------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence 57889999999999 9999999999999987 233467899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004851 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (727)
+..|++++++ + +...++..+|.+|..+|++++|+..|++++++ +|+...++..+|.++...|+
T Consensus 138 ~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 138 EASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccC
Confidence 9999999999 6 66779999999999999999999999999987 68888999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 004851 700 VRSRKAQSLETLL 712 (727)
Q Consensus 700 ~~~A~~~~l~~al 712 (727)
+++|+ ..|+++-
T Consensus 201 ~~~A~-~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAA-RAAALEH 212 (217)
T ss_dssp -------------
T ss_pred HHHHH-HHHHHHh
Confidence 99999 8888764
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=4.4e-20 Score=185.51 Aligned_cols=278 Identities=12% Similarity=0.040 Sum_probs=217.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004851 358 EAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (727)
Q Consensus 358 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (727)
...+..|+|..|+..+++.....|.. .......++.+|...|+++.|+..++. ..+....++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~-------~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~~~~~~a~~~ 70 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPER-------DVERDVFLYRAYLAQRKYGVVLDEIKP---------SSAPELQAVRM 70 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHH-------HHHHHHHHHHHHHHTTCHHHHHHHSCT---------TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchh-------hHHHHHHHHHHHHHCCCHHHHHHHhcc---------cCChhHHHHHH
Confidence 34667899999999988765544332 124567889999999999999986643 23446778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH
Q 004851 438 IGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA 517 (727)
Q Consensus 438 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 517 (727)
++..+...+++++|+..+++++.. ..+|....+++.+|.++...|++++|+.+|++ +...
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------------~~~~ 130 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------------GDSL 130 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------------CCSH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------------CCCH
Confidence 999999999999999999988764 01477788999999999999999999999987 1125
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004851 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (727)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (727)
.++..+|.++..+|++++|+..|+++++..+.. ........+..++...|++++|+.+|+++++.. +
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------p 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------S 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------C
Confidence 678899999999999999999999999885332 111111112233344589999999999999861 1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhc
Q 004851 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEILEFVVGIREEKL 676 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~ 676 (727)
....+++.+|.++...|++++|+.+|++++.. +|+...++.++|.++...|++.+ +..++++++++
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~----- 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA----- 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----
Confidence 23578999999999999999999999999999 89999999999999999999986 56899999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004851 677 GTANPDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 677 g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
+|+.+.+. .+..+.+.++++.
T Consensus 265 ---~P~~~~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 265 ---HRSHPFIK----EYRAKENDFDRLV 285 (291)
T ss_dssp ---CTTCHHHH----HHHHHHHHHHHHH
T ss_pred ---CCCChHHH----HHHHHHHHHHHHH
Confidence 34444332 3455566666666
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2e-19 Score=180.68 Aligned_cols=260 Identities=13% Similarity=0.067 Sum_probs=209.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004851 400 LICETKGDHEAALEHLVLASMTMIANDQDAEV-ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (727)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (727)
...+..|+|..|+..+++.. ...|.. ......++.+|..+|+++.|+..++.. .+....++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a~~ 69 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVK------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQAVR 69 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSC------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHHHH
Confidence 34567899999999887542 234444 457788899999999999999866441 344678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHH
Q 004851 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (727)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (727)
.++..+...+++++|+..+++++... ..|....++..+|.++...|++++|+.+|++ + ...
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~-------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~-------~~~ 130 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRS-------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----G-------DSL 130 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSC-------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----C-------CSH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcc-------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----C-------CCH
Confidence 99999999999999999999987641 0233466799999999999999999999987 1 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.++..+|.+|..+|++++|+..|++++... .... .......+..++...|++++|+.+|+++++. +
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~ 196 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------C 196 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------C
Confidence 678899999999999999999999998862 1111 1111111223344568999999999999998 7
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|....+++.+|.++..+|++++|+..|++++.+ +|+++.++.++|.++...|+..++...+++++++++|+
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 888899999999999999999999999999987 68889999999999999999987532899999999997
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=4.7e-18 Score=192.64 Aligned_cols=366 Identities=14% Similarity=0.094 Sum_probs=229.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-------------HH---------HHHHHHHHcCChhH
Q 004851 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC-------------LH---------VIAAIYCSLGQYNE 283 (727)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~-------------~~---------~la~~~~~~g~~~~ 283 (727)
..++.|...|. +.+|++.|++++.- .......++.....+ +. .+|.++...|.|++
T Consensus 990 ~~vKaf~~agl-p~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 990 VTVKAFMTADL-PNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 35677888886 99999999999822 110001111111100 11 13666666666666
Q ss_pred HHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHh
Q 004851 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363 (727)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 363 (727)
|..+|+++-.. ...+...+...+++++|+++++++ ....+|+.+|.++...
T Consensus 1068 Af~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1068 AFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHHhC
Confidence 66666665311 011222233555555555555532 2356677777777777
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 004851 364 LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL 443 (727)
Q Consensus 364 g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 443 (727)
|++++|+..|.++ .+ ...+..++.++...|+|++|+++|..|....... .+...+|.+|.
T Consensus 1119 G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------~Idt~LafaYA 1178 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------YVETELIFALA 1178 (1630)
T ss_pred CCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------cccHHHHHHHH
Confidence 7777777777665 11 1346667777777777777777777665432110 11123667777
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 004851 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (727)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (727)
+++++++ ++.| +. .+.. ..+..+|..+...|+|++|..+|.++ ..|..+
T Consensus 1179 Kl~rlee-le~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~ny~rL 1227 (1630)
T 1xi4_A 1179 KTNRLAE-LEEF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRL 1227 (1630)
T ss_pred hhcCHHH-HHHH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hHHHHH
Confidence 7777664 3333 11 1222 34556777777777777777777764 135667
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Q 004851 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (727)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (727)
+.+|..+|++++|++.+++|... .+|...+.++...|+|..|..+... +.. .+..+
T Consensus 1228 A~tLvkLge~q~AIEaarKA~n~------------~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~~deL 1283 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKANST------------RTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------HADEL 1283 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHhCCH------------HHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------CHHHH
Confidence 77777777777777777777221 4666777777777777777776653 211 23456
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--IGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
..++..|...|.+++|+.+++.++.+ ++.....+..||.+|.+ -++..+++++|...+.+-.-+. --
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r---~~ 1352 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR---AA 1352 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH---HH
Confidence 67888899999999999999999988 67777788788888765 4567778888877765411000 01
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004851 682 DVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (727)
+.+..|..+..+|.+-|+++.|+ ..+-
T Consensus 1353 e~~~lW~elv~LY~~~~e~dnA~-~tm~ 1379 (1630)
T 1xi4_A 1353 EQAHLWAELVFLYDKYEEYDNAI-ITMM 1379 (1630)
T ss_pred HHHHHHHHHHHHHHhcccHHHHH-HHHH
Confidence 56778889999999999999999 5443
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=3.4e-19 Score=179.61 Aligned_cols=250 Identities=11% Similarity=0.073 Sum_probs=199.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 004851 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (727)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (727)
++++|+.+|.++ |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 488888888776 4467788999999999999999988888778889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH
Q 004851 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (727)
+|++++|+.+|++++.+....+ +....+.++.++|.+|... |++++|+.+|++++.+.... ........++..+
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~l 164 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKC 164 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHH
Confidence 9999999999999999987754 2344578999999999996 99999999999999997652 2234456789999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Q 004851 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (727)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (727)
|.++..+|++++|+.+|++++.+.+...........++.++|.++..+|++++|+.+|++++.+.+...... ....+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~~~l 241 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFL 241 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH---HHHHH
Confidence 999999999999999999999987665322234556788999999999999999999999998755433221 23456
Q ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004851 604 NQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652 (727)
Q Consensus 604 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 652 (727)
..++..+. ..+++++|+..|.+++.+ +|....++..+-..+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 66676665 456799999999888776 777766665555444
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=8.9e-19 Score=174.91 Aligned_cols=226 Identities=13% Similarity=0.163 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhc
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 506 (727)
.+.+++.+|.++...|++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|+++++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 3456777888888888888888888887762 224677788888888 88888888888888766
Q ss_pred CCCCCChHhHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCHHHHH
Q 004851 507 PVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSY 578 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 578 (727)
+ ...++..+|.+|.. .+++++|+.+|++++... ...++..+|.+|.. .+++++|+
T Consensus 72 ---~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 ---N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp ---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ---C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 1 24567788888888 888888888888887651 14567788888888 88888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004851 579 DSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (727)
Q Consensus 579 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (727)
.+|+++++. . ...++..+|.+|.. .+++++|+.+|+++++. . ...+++.+|.+|..
T Consensus 135 ~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------K--DSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHHc
Confidence 888888763 1 23567778888887 78888888888888765 1 23577888888888
Q ss_pred ----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHhhh
Q 004851 655 ----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE----AGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 655 ----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~----~g~~~~A~~~~l~~al~~~p~ 717 (727)
.+++++|+.+|+++++. .+ ..+++.||.+|.. .+++++|+ .+|++++++.|.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCCH
Confidence 88888888888888764 12 5677888888888 88888888 888888888776
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=8.9e-19 Score=174.91 Aligned_cols=226 Identities=15% Similarity=0.165 Sum_probs=197.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCChhHHHHHHHHhc
Q 004851 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSI 292 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al 292 (727)
+|..+.+++.+|..++..|+ +++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~-----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACDL-----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 46778899999999999997 99999999999871 124678999999999 999999999999998
Q ss_pred ccchhccCccchHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hc
Q 004851 293 EIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----AL 364 (727)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 364 (727)
+.. + ..+++.+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+
T Consensus 70 ~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 70 DLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred HCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence 762 2 2358899999999 99999999999999876 256889999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004851 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (727)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (727)
++++|+.+|+++++... ..++..+|.+|.. .+++++|+.+|++++.. ....+++.+|.
T Consensus 129 ~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~ 190 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN 190 (273)
T ss_dssp CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 99999999999998531 3568999999999 99999999999999753 12467899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004851 441 TYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI 503 (727)
Q Consensus 441 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 503 (727)
+|.. .+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 9999 99999999999999986 33 6788999999999 99999999999999998
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=9.6e-20 Score=178.22 Aligned_cols=222 Identities=16% Similarity=0.190 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004851 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
...+..++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 87 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALELD---- 87 (243)
T ss_dssp ----------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 345677889999999999999999999999986 67788999999999999999999999999999982
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004851 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...
T Consensus 88 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 88 -----SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred -----CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3346789999999999999999999999999986543 4678899999999999999999999999862
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004851 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
+....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|+++
T Consensus 156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 156 --------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred --------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 123568899999999999999999999999998 7788889999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004851 669 VGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 669 l~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
+++ +|+...++..++.+....|
T Consensus 220 ~~~--------~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 IDI--------QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHH--------CTTCHHHHHHHTC------
T ss_pred Hcc--------CcchHHHHHHHHHHHhhcc
Confidence 987 5777778877777665444
No 60
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=4.8e-19 Score=178.54 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004851 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (727)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (727)
++++|+.+|.++ |.+|...|++++|+.+|++++.+..+.. +.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a--------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------------ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH--------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 488888888766 5578889999999999999999987764 245568899999999999
Q ss_pred cCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 004851 487 TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMG 565 (727)
Q Consensus 487 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 565 (727)
+|++++|+.+|++++.+.... .+....+.++.++|.+|... |++++|+.+|++++.+.+.. +.......++.++|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHR---GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCA 165 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 999999999999999998763 23455678999999999996 99999999999999999865 44444567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004851 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (727)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (727)
.+|..+|++++|+.+|++++.+....... ......++..+|.++..+|++++|+.+|++++.+...... ......+
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l 241 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFL 241 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHH
Confidence 99999999999999999999864332111 1123457899999999999999999999999987222110 1112245
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 646 SNLAGTYD--AIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 646 ~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
..++..+. ..+++++|+..|++++.+ +|.....+..+-..+
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 56667665 456788999888887643 677777666665554
No 61
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=3.9e-17 Score=185.30 Aligned_cols=353 Identities=15% Similarity=0.110 Sum_probs=262.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHH
Q 004851 227 QARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306 (727)
Q Consensus 227 ~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 306 (727)
.|..+...|. +++|..+|+++... . ..+...+...+++++|+++++++-.
T Consensus 1055 IA~Iai~lgl-yEEAf~IYkKa~~~-------------~---~A~~VLie~i~nldrAiE~Aervn~------------- 1104 (1630)
T 1xi4_A 1055 IANIAISNEL-FEEAFAIFRKFDVN-------------T---SAVQVLIEHIGNLDRAYEFAERCNE------------- 1104 (1630)
T ss_pred HHHHHHhCCC-HHHHHHHHHHcCCH-------------H---HHHHHHHHHHhhHHHHHHHHHhcCC-------------
Confidence 3777788886 88888888876311 1 1123334488999999999997632
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Q 004851 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (727)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (727)
..+|+.+|.++...|++++|+..|.++ +....|..+|.++.+.|+|++|+++|..+.+..+...
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-- 1168 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-- 1168 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--
Confidence 235999999999999999999999774 3457788899999999999999999999988764321
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 004851 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (727)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (727)
+...+|.+|.+++++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1169 -------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1169 -------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred -------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 13358999999999885 444421 2222 35567999999999999999999885
Q ss_pred CCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004851 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (727)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (727)
..|..+|.+|.++|++++|++.+.+|.. ..+|...+.++...|+|..|..+... +..
T Consensus 1222 --------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv 1278 (1630)
T 1xi4_A 1222 --------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV 1278 (1630)
T ss_pred --------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc
Confidence 3678899999999999999999998832 35788999999999999999988764 322
Q ss_pred HHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHH
Q 004851 547 YNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFE 624 (727)
Q Consensus 547 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~ 624 (727)
. +..+..++..|...|.|++|+.+++.++.+- ......+..+|.+|.+ .++..+++++|.
T Consensus 1279 ~----------~deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1279 H----------ADELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 2345678999999999999999999998762 2245577777777765 457788888888
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004851 625 EARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI------REEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 625 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
..+.+-+-+. --..+..|..+..+|.+-|+++.|+..+-..... +...+ ..+.+++.++.....|...+
T Consensus 1341 ~rini~k~~r---~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1341 SRVNIPKVLR---AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccchHhH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHHhhC
Confidence 8776511000 0145667889999999999999999544443211 11221 24566778888888887555
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=6.7e-19 Score=164.24 Aligned_cols=169 Identities=18% Similarity=0.233 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004851 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (727)
+.+|+.+|.+|..+|++++|+.+|++++++.|.. ..++..+|.+|...|++++|+..+.+++...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------- 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------- 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence 5689999999999999999999999999987665 5789999999999999999999999998762
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
+....++..+|.++...++++.|...+.+++.+ .|....++..+|.+|..+|++++|+..|++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----- 136 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI----- 136 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence 224578889999999999999999999999998 8888899999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....++..+|.+|..+|++++|+ ..|+++++++|+
T Consensus 137 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 173 (184)
T 3vtx_A 137 ---KPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEEK 173 (184)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTHH
T ss_pred ---cchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCcc
Confidence 6888999999999999999999999 999999999998
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=2e-19 Score=179.58 Aligned_cols=258 Identities=14% Similarity=0.018 Sum_probs=203.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 004851 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (727)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (727)
+......|++++|+..|.+++... ...++....++..+|.++...|++++|+.+|++++.+ .|....++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~ 81 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFN 81 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHH
Confidence 334455688999999999987531 1235678899999999999999999999999999998 777889999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHH
Q 004851 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (727)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (727)
.+|.+|...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++.+.+.. .
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~ 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD---------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-------P 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC---------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------h
Confidence 99999999999999999999999983 3335789999999999999999999999999986544 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.... ...++...|++++|+.++.+++.... ... ....++.++...++.++|+..+++++...... .
T Consensus 146 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~ 211 (275)
T 1xnf_A 146 FRSL-WLYLAEQKLDEKQAKEVLKQHFEKSD----KEQ-----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----A 211 (275)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHSC----CCS-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----H
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC----cch-----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----c
Confidence 2222 23344677999999999999887521 111 12347778888899999999999988763321 2
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004851 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (727)
|....++..+|.+|...|++++|+.+|++++.+ +|.... ..+.++...|++++|+ ..|
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~---~~~~~~~~l~~~~~a~-~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNFV---EHRYALLELSLLGQDQ-DDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTCH---HHHHHHHHHHHHHHC-----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhHH---HHHHHHHHHHHHHhhH-HHH
Confidence 344679999999999999999999999999975 454322 3377888999999999 766
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=1.7e-18 Score=170.47 Aligned_cols=209 Identities=15% Similarity=0.103 Sum_probs=186.1
Q ss_pred ChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 470 HPAV-ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 470 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
+|.. +.++..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++...+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4554 8899999999999999999999999999982 33467899999999999999999999999998855
Q ss_pred hCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004851 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
.. ..++..+|.+|...|++++|+.+|++++. ....+....++..+|.++...|++++|+.+|++++.
T Consensus 103 ~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 103 RN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43 46888999999999999999999999886 111234578899999999999999999999999999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHH
Q 004851 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSL 708 (727)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l 708 (727)
. .|....++..+|.++...|++++|+.+|++++.. .|....++..++.++...|++++|. ..+
T Consensus 170 ~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~-~~~ 232 (252)
T 2ho1_A 170 L--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAA-SYG 232 (252)
T ss_dssp H--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred c--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHH-HHH
Confidence 8 7777889999999999999999999999999864 5667788999999999999999999 999
Q ss_pred HHHHHHhhh
Q 004851 709 ETLLDANSR 717 (727)
Q Consensus 709 ~~al~~~p~ 717 (727)
+++++.+|+
T Consensus 233 ~~~~~~~p~ 241 (252)
T 2ho1_A 233 LQLKRLYPG 241 (252)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHCCC
Confidence 999999987
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=5.4e-19 Score=176.41 Aligned_cols=259 Identities=13% Similarity=0.039 Sum_probs=203.4
Q ss_pred HHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 004851 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (727)
++..+...|++++|+..|++++... +..+.....+++.+|.++...|++++|+.+|++++.. +|...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 77 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP 77 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred eeeccCccchHHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence 3444556789999999999999873 2223345667999999999999999999999999998 78888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004851 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
.++..+|.++...|++++|+.+|++++.+.+... .++..+|.++...|++++|+.+|++++... +..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~- 145 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------YAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP- 145 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence 9999999999999999999999999999876543 579999999999999999999999998642 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
.....++ ++...|++++|+..+.+++.. .|..... ..++.++...+++++|+..+++++.....
T Consensus 146 --~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---- 209 (275)
T 1xnf_A 146 --FRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTS---- 209 (275)
T ss_dssp --HHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHH----
T ss_pred --HHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccccc----
Confidence 2223333 446679999999999999886 2332223 34788888899999999999988766322
Q ss_pred CChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 004851 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (727)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (727)
..+....++..+|.+|...|++++|+.+|++++.+.+.. +...+.++...|++++|+..+
T Consensus 210 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 210 -LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHHC----
T ss_pred -ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHhhHHHH
Confidence 123447889999999999999999999999999875432 123477888889999988876
No 66
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=3.4e-18 Score=168.28 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=180.7
Q ss_pred Chh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004851 428 DAE-VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 428 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
.+. .+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 101 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-- 101 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--
Confidence 344 3788999999999999999999999999988 67778999999999999999999999999999982
Q ss_pred CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004851 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
+....++..+|.++...|++++|+.+|++++. .+..+....++..+|.++...|++++|+.+|++++.
T Consensus 102 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 102 -------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33467889999999999999999999999987 123344567889999999999999999999999988
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 004851 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILE 666 (727)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 666 (727)
.. +....++..+|.++...|++++|+.+|++++.. .|....++..++.++...|++++|..+++
T Consensus 170 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 170 LN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 62 123568899999999999999999999999887 67778889999999999999999999999
Q ss_pred HHHHH
Q 004851 667 FVVGI 671 (727)
Q Consensus 667 ~al~~ 671 (727)
+++++
T Consensus 234 ~~~~~ 238 (252)
T 2ho1_A 234 QLKRL 238 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=4.5e-18 Score=163.93 Aligned_cols=209 Identities=18% Similarity=0.134 Sum_probs=185.2
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004851 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.|....++..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999999999983 334678999999999999999999999999988654
Q ss_pred CCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004851 550 APGQQSTVAGIEAQMGVMYYML-GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
. ..++..+|.++... |++++|+.+|++++. .+ ..+....++..+|.++...|++++|+.+|+++++
T Consensus 75 ~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 S-------AEINNNYGWFLCGRLNRPAESMAYFDKALA-----DP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp C-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-----ST-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-----Cc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 46788999999999 999999999999987 11 1233567899999999999999999999999999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHH
Q 004851 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQS 707 (727)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~ 707 (727)
. .|....++..+|.++...|++++|+.++++++.+. | .....+..++.++...|+.++|. .+
T Consensus 142 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~-~~ 204 (225)
T 2vq2_A 142 A--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAY-EY 204 (225)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred h--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHH-HH
Confidence 8 77778899999999999999999999999999873 5 55667888999999999999999 99
Q ss_pred HHHHHHHhhh
Q 004851 708 LETLLDANSR 717 (727)
Q Consensus 708 l~~al~~~p~ 717 (727)
++.+++.+|+
T Consensus 205 ~~~~~~~~p~ 214 (225)
T 2vq2_A 205 EAQLQANFPY 214 (225)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9999998886
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.2e-17 Score=160.95 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=180.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004851 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
..+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-- 72 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence 35677888999999999999999999999999998 67778899999999999999999999999999983
Q ss_pred CCCCCChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004851 507 PVPGVPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (727)
+....++..+|.++... |++++|+.++++++. . +..+....++..+|.++...|++++|+.+|++++
T Consensus 73 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 73 -------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D----PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp -------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S----TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33466889999999999 999999999999987 1 2233446788999999999999999999999998
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHH
Q 004851 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEI 664 (727)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 664 (727)
... +....++..+|.++...|++++|+.+|++++.. .| ....++..++.++...|++++|..+
T Consensus 141 ~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 141 AAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp HHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 862 123578899999999999999999999999998 66 6677888999999999999999999
Q ss_pred HHHHHHH
Q 004851 665 LEFVVGI 671 (727)
Q Consensus 665 ~~~al~~ 671 (727)
++.++..
T Consensus 205 ~~~~~~~ 211 (225)
T 2vq2_A 205 EAQLQAN 211 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=6.3e-19 Score=172.37 Aligned_cols=205 Identities=17% Similarity=0.157 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004851 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
..+..++.+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~- 90 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA- 90 (243)
T ss_dssp ---------------------CCTTHHHHHTT---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-
Confidence 45678899999999999999999999999886 23346789999999999999999999999999885543
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004851 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
..++..+|.++...|++++|+.+|++++.... ....++..+|.++...|++++|+.+|++++..
T Consensus 91 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 154 (243)
T 2q7f_A 91 ------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-- 154 (243)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred ------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 57888999999999999999999999998621 12468899999999999999999999999998
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004851 632 QECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (727)
.|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|. ..|+++
T Consensus 155 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~ 219 (243)
T 2q7f_A 155 ------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKAL-EMLDKA 219 (243)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHH-HHHHHH
T ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence 7778889999999999999999999999999986 5677789999999999999999999 999999
Q ss_pred HHHhhh
Q 004851 712 LDANSR 717 (727)
Q Consensus 712 l~~~p~ 717 (727)
++++|+
T Consensus 220 ~~~~p~ 225 (243)
T 2q7f_A 220 IDIQPD 225 (243)
T ss_dssp HHHCTT
T ss_pred HccCcc
Confidence 999987
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=6.4e-19 Score=190.18 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhc
Q 004851 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (727)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (727)
...+++++..+..... ..+..+.+++.+|.++...|++ ++|+.+|++++++ .|....++..+|.+|...
T Consensus 81 ~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---------EPELVEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHc
Confidence 3334444444433322 2567889999999999999999 9999999999999 344577899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004851 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML---------GNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
|++++|+.+|++++++.+. ..++..+|.+|... |++++|+.+|++++++. +....
T Consensus 151 g~~~~A~~~~~~al~~~p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 214 (474)
T 4abn_A 151 GDVTSAHTCFSGALTHCKN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLDGR 214 (474)
T ss_dssp TCHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHH
T ss_pred CCHHHHHHHHHHHHhhCCC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCCHH
Confidence 9999999999999987422 37889999999999 99999999999999872 23467
Q ss_pred HHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004851 602 ALNQMGLACVQR--------YSINEAVELFEEARSILEQECGPYHP---DTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 602 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
+|..+|.+|... |++++|+.+|++++++ +| ....+++++|.+|..+|++++|+.+|+++++
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999 9999999999999999 78 8899999999999999999999999999998
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004851 671 IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 671 ~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (727)
+ +|+...++..++.++...|++++|+ ..+.++
T Consensus 287 l--------~p~~~~a~~~l~~~~~~lg~~~eAi-~~~~~~ 318 (474)
T 4abn_A 287 L--------DPAWPEPQQREQQLLEFLSRLTSLL-ESKGKT 318 (474)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred h--------CCCCHHHHHHHHHHHHHHHHHHHHH-HHhccc
Confidence 7 6888899999999999999999999 766543
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=3.4e-18 Score=159.45 Aligned_cols=167 Identities=17% Similarity=0.294 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004851 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
.+.+|+.+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..+.+++...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-- 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-- 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--
Confidence 4678999999999999999999999999999 45557889999999999999999999999999876554
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..++..+|.++...++++.|...+.+++.+. +....++..+|.++...|++++|+.+|++++++
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 73 -----AEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 5678899999999999999999999998862 224578899999999999999999999999999
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+|....++.++|.+|..+|++++|+.+|++++++
T Consensus 137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999986
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=187.93 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=183.6
Q ss_pred CChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 427 QDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
..+..+.+++.+|.++...|++ ++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-- 166 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-- 166 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4566788999999999999999 9999999999998 7888999999999999999999999999999988
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc-----
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESM---------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----- 571 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----- 571 (727)
.|. ..++..+|.++... |++++|+.+|++++++.+.. ..++..+|.+|...
T Consensus 167 -------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 167 -------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp -------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTT
T ss_pred -------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhc
Confidence 223 47899999999999 99999999999999987655 57899999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004851 572 ---GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (727)
Q Consensus 572 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (727)
|++++|+.+|++++.+.+. ......++.++|.+|...|++++|+.+|++++++ +|+...++..+
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l 298 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQRE 298 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 9999999999999997210 0145789999999999999999999999999999 88889999999
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 004851 649 AGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 649 a~~~~~~g~~~~A~~~~~~a 668 (727)
+.++..+|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999877654
No 73
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=1.8e-17 Score=168.34 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=193.9
Q ss_pred cCCHHHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004851 405 KGDHEAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (727)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (727)
.|++++|.++++++...... .++.......+...|.+|...|++++|+.+|.+++.+..+.. +....+.++..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 46677788888777665442 223334455666678899999999999999999999988764 34566889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004851 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (727)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (727)
+|.+|..+|++++|+.+|++++.++... .+....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~ 156 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE 156 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence 9999999999999999999999998764 2345567899999999999 99999999999999999875 55555678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004851 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (727)
++.++|.+|..+|++++|+.+|++++.+.+.... ......++..+|.++..+|++++|+.+|++++ +.... . ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~-~--~~ 230 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF-S--GS 230 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS-T--TS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC-C--CC
Confidence 8999999999999999999999999999877543 23445688999999999999999999999999 61110 0 12
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHH
Q 004851 640 DTLGVYSNLAGTYDAIGRLDDAIE 663 (727)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~~A~~ 663 (727)
.....+..++..+ ..|+.+.+..
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2334556666665 5677665555
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=1.6e-18 Score=194.19 Aligned_cols=176 Identities=21% Similarity=0.313 Sum_probs=163.7
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004851 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
.|..+.++++||.+|..+|++++|+.+|++++++.++. ..+++++|.+|..+|++++|+.+|++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI----- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 56778999999999999999999999999999997665 678999999999999999999999999997
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.+....+++++|.++..+|++++|+++|++|+++ +|+...++.+||.+|..+|++++|+.+|++++++
T Consensus 73 ---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l- 140 (723)
T 4gyw_A 73 ---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL- 140 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 2335789999999999999999999999999999 8999999999999999999999999999999998
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh-cCC
Q 004851 673 EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR-VNN 720 (727)
Q Consensus 673 ~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~-~~~ 720 (727)
+|+...++.+||.+|..+|++++|. +.+++++++.|+ +..
T Consensus 141 -------~P~~~~a~~~L~~~l~~~g~~~~A~-~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 141 -------KPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLEK 181 (723)
T ss_dssp -------CSCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHHHHT
T ss_pred -------CCCChHHHhhhhhHHHhcccHHHHH-HHHHHHHHhChhHHhh
Confidence 6888999999999999999999999 999999999998 443
No 75
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.79 E-value=2e-17 Score=167.93 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=198.3
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004851 362 QALQFSEAQKFCQMALDIHKDNG---SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (727)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (727)
..|++++|..+++++.+..+... .......+..+...|.+|...|++++|+.+|.+++.+....++....+.++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888888888887765321 122233344566678899999999999999999999998888888889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004851 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
|.+|..+|++++|+.+|++++.++.... +....+.++.++|.+|.. |++++|+.+|++++.+.... .+......
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~~~~~~ 156 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERLRQAAE 156 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CChhHHHH
Confidence 9999999999999999999999987654 234567899999999999 99999999999999998763 23455678
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004851 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (727)
++.++|.+|..+|++++|+.+|++++.+.+.. +........+..+|.++..+|++++|+.+|++++ +.+.... ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---~~ 231 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---SE 231 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT---SH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC---CH
Confidence 99999999999999999999999999999876 3344556688899999999999999999999998 5333221 22
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHH
Q 004851 599 FGVALNQMGLACVQRYSINEAVE 621 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~ 621 (727)
....+..++..+ ..|+.+.+..
T Consensus 232 e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 232 DCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHH
Confidence 344566666655 5677655544
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=7.5e-18 Score=188.65 Aligned_cols=174 Identities=21% Similarity=0.294 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004851 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.|..+.++.+||.+|..+|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++.++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6889999999999999999999999999999999 4556789999999999999999999999999999766
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. +.+++++|.+|..+|++++|+.+|++++++ .+....++.++|.+|..+|++++|+.+|++|+++
T Consensus 76 ~-------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 76 F-------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 688999999999999999999999999987 2335789999999999999999999999999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004851 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
+|+...++.+||.+|..+|++++|.+.|++++++....
T Consensus 141 --------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 --------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp --------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred --------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 89999999999999999999999999999999987543
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=9.5e-17 Score=158.92 Aligned_cols=224 Identities=15% Similarity=0.147 Sum_probs=180.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004851 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
.+..+..++.+|..++..|++++|+..|++++.. .++++....+++.+|.+|...|++++|+..|++++.....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence 4555678899999999999999999999999987 2233444899999999999999999999999999999432
Q ss_pred CCCCChHhHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Q 004851 508 VPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (727)
.+....+++.+|.++.. .|++++|+..|++++...+.... +. .+..
T Consensus 85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~--------------~a~~ 138 (261)
T 3qky_A 85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL-------VD--------------DATQ 138 (261)
T ss_dssp -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-------HH--------------HHHH
T ss_pred -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-------HH--------------HHHH
Confidence 44567889999999999 99999999999999998765521 11 1111
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc----
Q 004851 580 SFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI---- 655 (727)
Q Consensus 580 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 655 (727)
.+..... .....+..+|.+|...|++++|+..|+++++. .|+++....+++.+|.+|..+
T Consensus 139 ~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 139 KIRELRA-----------KLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccc
Confidence 1111111 12345788999999999999999999999998 222344788999999999987
Q ss_pred ------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004851 656 ------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 656 ------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
|++++|+..|+++++.. |+++....+...++.++...|+++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999874 677888889999999999888887654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.75 E-value=1.9e-17 Score=160.29 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
..++.+|.++...|++++|+.+|++++.+ .| ....+++.+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 68889999999999999999999999998 44 55678888999999999999999999999987
Q ss_pred ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
.|....++..+|.+|..+|++++|+.+|++++.+.+........++.++..+|.++...|++++|+.+|++++++
T Consensus 72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---- 146 (228)
T 4i17_A 72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---- 146 (228)
T ss_dssp -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence 445678899999999999999999999999999876542222234567999999999999999999999999875
Q ss_pred CCCCchh--HHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCccHH
Q 004851 592 GERKSAF--FGVALNQMGLACVQRYSI---------------------------NEAVELFEEARSILEQECGPYHPDTL 642 (727)
Q Consensus 592 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~ 642 (727)
.+. ...++..+|.++...|+. ++|+.+|++++++ +|+..
T Consensus 147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~ 214 (228)
T 4i17_A 147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT 214 (228)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence 344 578899999999998888 8999999999998 78877
Q ss_pred HHHHHHHHHHH
Q 004851 643 GVYSNLAGTYD 653 (727)
Q Consensus 643 ~~~~~la~~~~ 653 (727)
.+...++.+..
T Consensus 215 ~~~~~l~~i~~ 225 (228)
T 4i17_A 215 EIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 78777777653
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2e-16 Score=160.67 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-HHhcCCCCCCh
Q 004851 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-------TGKL-------RESKSYCENALR-IYEKPVPGVPP 513 (727)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~ 513 (727)
++|+..|++++.. .|....+|+.+|.++.. .|++ ++|+..|++++. + .
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------L 95 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---------T
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---------C
Confidence 7899999999998 68889999999999874 5886 899999999998 5 3
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004851 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
|....+|..+|.++...|++++|+..|++++++.+..+ ..+|..+|.++...|++++|+..|+++++...
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p---- 165 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR---- 165 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----
Confidence 44567899999999999999999999999998644321 12788999999999999999999999987421
Q ss_pred CCchhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 594 RKSAFFGVALNQMGLACVQ-RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
. ...++...+.+... .|++++|+.+|+++++. +|....++..++.++...|++++|+.+|++++...
T Consensus 166 ~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 166 T----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp C----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred C----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 1 13455555555433 79999999999999998 67788899999999999999999999999999731
Q ss_pred HHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 673 EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 673 ~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...| .....+..++.++...|+.+.|. ..++++++..|+
T Consensus 234 -----~l~p~~~~~l~~~~~~~~~~~g~~~~a~-~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 -----SLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAFRE 273 (308)
T ss_dssp -----SSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHTTT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHccc
Confidence 1134 35778889999999999999999 999999999997
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=7.3e-17 Score=156.13 Aligned_cols=190 Identities=11% Similarity=0.116 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004851 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
+..++.+|.++...|++++|+.+|++++.+... ....++..+|.++...|++++|+.+|++++.+.+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 74 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---- 74 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----
Confidence 478999999999999999999999999999420 22356777999999999999999999999976544
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004851 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
...++..+|.+|..+|++++|+.+|++++.+.+..... ....+.++..+|.++...|++++|+.+|++++++
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---- 146 (228)
T 4i17_A 75 ---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---- 146 (228)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred ---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence 36789999999999999999999999999873221000 0113467999999999999999999999999998
Q ss_pred cCCCCcc--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHhcCCCChhHH
Q 004851 634 CGPYHPD--TLGVYSNLAGTYDAIGRL---------------------------DDAIEILEFVVGIREEKLGTANPDVD 684 (727)
Q Consensus 634 ~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~g~~~p~~~ 684 (727)
+|+ ...++..+|.+|...|+. ++|+.+|++++++ +|+..
T Consensus 147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~ 214 (228)
T 4i17_A 147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT 214 (228)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence 899 889999999999999988 8899999999987 57777
Q ss_pred HHHHHHHHHHH
Q 004851 685 DEKRRLAELLK 695 (727)
Q Consensus 685 ~~~~~La~~~~ 695 (727)
.++..|+.+..
T Consensus 215 ~~~~~l~~i~~ 225 (228)
T 4i17_A 215 EIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777776643
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=2.8e-16 Score=155.54 Aligned_cols=223 Identities=15% Similarity=0.153 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 004851 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (727)
+..+..++.+|..++..|+|++|+..|++++... +.++. ...+++.+|.+|..+|++++|+..|++++...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-- 83 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-- 83 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--
Confidence 3446779999999999999999999999999885 33321 245699999999999999999999999999842
Q ss_pred hCCCCchHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 004851 342 LGETDPRVGETCRYLAEAHVQ--------ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (727)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~ 413 (727)
+++....+++.+|.++.. .|++++|+..|++++...|..... ...+..
T Consensus 84 ---~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~a~~~------------- 139 (261)
T 3qky_A 84 ---IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV--------DDATQK------------- 139 (261)
T ss_dssp ---TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--------HHHHHH-------------
T ss_pred ---CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH--------HHHHHH-------------
Confidence 245778999999999999 999999999999999988765321 111111
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc------
Q 004851 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT------ 487 (727)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 487 (727)
+... .......++.+|.+|...|++++|+..|++++... ++++....++..+|.+|..+
T Consensus 140 -~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 140 -IREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp -HHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred -HHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence 1111 11233457889999999999999999999999872 22344788999999999977
Q ss_pred ----CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH
Q 004851 488 ----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (727)
Q Consensus 488 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (727)
|++++|+.+|+++++... +++....+...++.++..+++++++.
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFP------DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hcccchHHHHHHHHHHHHHHCC------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999943 35566778888899888888876654
No 82
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.8e-15 Score=156.15 Aligned_cols=241 Identities=17% Similarity=0.171 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004851 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---------SLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (727)
+....|..+...|+|++|++.|.++++..+...+.. ......++..+|.+|...|++++|++++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999877654421 12234568899999999999999999999999888
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004851 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (727)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (727)
...+.......+...++.++...|++++|+.++++++....... +.+....++..+|.+|...|+|++|+.++++++.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 77766666667788899999999999999999999999988765 3566788999999999999999999999999999
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004851 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (727)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (727)
..... .+.+..+.++..++.+|...|++++|..++++++.+.+.........+.++..+|.++...|+|.+|..+|.
T Consensus 164 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 164 EFKKL---DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHTTS---SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHhc---ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88763 346678899999999999999999999999999999988855555677888999999999999999999999
Q ss_pred HHHHHHHHhCCCCch
Q 004851 583 NAISKLRAIGERKSA 597 (727)
Q Consensus 583 ~al~~~~~~~~~~~~ 597 (727)
+++..+.........
T Consensus 241 ~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 241 ESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHTTTSSCH
T ss_pred HHHHHhhhhhhhhhH
Confidence 999998877665443
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.70 E-value=3.8e-13 Score=148.79 Aligned_cols=446 Identities=8% Similarity=-0.047 Sum_probs=296.0
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC---hhHHH
Q 004851 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ---YNEAI 285 (727)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~ 285 (727)
.+......+|.....|..++......+. +..|...|++++..+ |.....|...+......|+ ++.+.
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 4455556789999999999999988886 999999999999987 3345567777777888888 99999
Q ss_pred HHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCH----HHHH----HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 004851 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL----ENSL----MCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (727)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (727)
.+|++++..... +.+. ..|..........++. +++. ..|++|+.. .|.-++....+|....
T Consensus 124 ~lfeRal~~~~~---~~sv----~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 124 PVLARCLSKELG---NNDL----SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYL 192 (679)
T ss_dssp HHHHHHTCSSSC---CCCH----HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHhcCC---CCCH----HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHH
Confidence 999999987410 1222 2344444444444443 3444 556665554 3431233334454444
Q ss_pred HHHH---------HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHH
Q 004851 358 EAHV---------QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL----------ICETKGDHEAALEHLVLA 418 (727)
Q Consensus 358 ~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~----------~~~~~g~~~~A~~~~~~a 418 (727)
.... .+++++.+..+|++++.+ |.. ........|...-. +-....+|..|...+...
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~---~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMD---CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCS---SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccH---HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 3322 345678888999988853 111 00000001111110 011112344444444332
Q ss_pred HHHHHhCCC--------------------ChhHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 419 SMTMIANDQ--------------------DAEVASVDCSIGDTYLSLS-------RYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 419 l~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
......... .......|......-...+ ........|++++.. .|
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p 340 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--------VC 340 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TT
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--------cC
Confidence 221111110 1122344444433322221 134456789999887 68
Q ss_pred hHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-
Q 004851 472 AVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND- 549 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 549 (727)
....+|+..+..+...|+.++|. ..|++|+..+ |.....+..++.+....|++++|..+|++++...+.
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999997 9999999873 223566888999999999999999999999987531
Q ss_pred -------CCCC-------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC-
Q 004851 550 -------APGQ-------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY- 614 (727)
Q Consensus 550 -------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g- 614 (727)
.+.. ......+|...+.+....|+.+.|..+|.+|++.. ... ...+|...|.+....+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~----~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLV----TPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGS----CTHHHHHHHHHHHTTTS
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHHhCC
Confidence 1110 01244578888888888999999999999998741 111 1245556666666655
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
+++.|..+|+.+++. .|+....+...+......|+.+.|..+|++++... +........+......-
T Consensus 485 d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-----~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 485 DTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-----SDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp CCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHH
Confidence 499999999999998 45556677788888889999999999999999642 11125667888888888
Q ss_pred HHhCChhHHHHHHHHHHHHHhhh
Q 004851 695 KEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 695 ~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...|+.+.+. ..++++++..|+
T Consensus 552 ~~~G~~~~~~-~v~~R~~~~~P~ 573 (679)
T 4e6h_A 552 SKVGSLNSVR-TLEKRFFEKFPE 573 (679)
T ss_dssp HHTCCSHHHH-HHHHHHHHHSTT
T ss_pred HHcCCHHHHH-HHHHHHHHhCCC
Confidence 9999999999 999999999986
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=9.6e-16 Score=142.40 Aligned_cols=172 Identities=17% Similarity=0.238 Sum_probs=153.9
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004851 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
......+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 72 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADA----- 72 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Confidence 3456788999999999999999999999987654332 5788899999999999999999999999862
Q ss_pred CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004851 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 73 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 139 (186)
T 3as5_A 73 ---PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-- 139 (186)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--
Confidence 223578899999999999999999999999998 7778889999999999999999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.|....++..+|.++...|++++|. ..++++++.+|+
T Consensus 140 ------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 176 (186)
T 3as5_A 140 ------RPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANELDEG 176 (186)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHC
T ss_pred ------CccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence 4666889999999999999999999 999999999998
No 85
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.9e-15 Score=152.06 Aligned_cols=227 Identities=9% Similarity=0.045 Sum_probs=186.1
Q ss_pred hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HHHHHhCCCC
Q 004851 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM-------LGQL-------ENSLMCYTTGLE-VQKQVLGETD 346 (727)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~ 346 (727)
++|+..|++++... +.++. +|+.+|..+.. .|++ ++|+..|++++. + +
T Consensus 33 ~~a~~~~~~al~~~-----p~~~~----~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L 95 (308)
T ss_dssp HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred HHHHHHHHHHHHHc-----CCCHH----HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence 78999999999875 44443 48888888764 5885 899999999998 6 6
Q ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
|....+|..+|.++...|++++|...|++++.+.|... ..+|..+|.++...|++++|+..|++++..
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----- 163 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------TLVYIQYMKFARRAEGIKSGRMIFKKARED----- 163 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc-------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence 88889999999999999999999999999998765432 126899999999999999999999999753
Q ss_pred CChhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 427 QDAEVASVDCSIGDTYL-SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
.|....++...+.+.. ..|++++|+..|+++++. .|....+|..++.++...|++++|+.+|++++....
T Consensus 164 -~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 164 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp -TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 2223445555555543 379999999999999998 577789999999999999999999999999998521
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
- ++.....++..++..+...|++++|..+++++++..++..
T Consensus 235 l-----~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 235 L-----PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp S-----CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred C-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 0 1123466788899999999999999999999999988653
No 86
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=1e-17 Score=171.59 Aligned_cols=340 Identities=14% Similarity=0.098 Sum_probs=160.7
Q ss_pred HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 004851 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (727)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (727)
.+....|++++|.+++++.- ++ .+|..||.++...|++++|+..|.++ .....
T Consensus 11 ~ll~~~~~ld~A~~fae~~~----------~~----~vWs~La~A~l~~g~~~eAIdsfika-------------~D~~~ 63 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN----------EP----AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC----------Ch----HHHHHHHHHHHHcCCHHHHHHHHHcC-------------CCHHH
Confidence 34457788999999999861 11 25999999999999999999999763 12347
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 004851 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (727)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (727)
+..++..+...|++++|+.+++.+++..+. +.+...++.+|.+.|++.++.+++. .|..
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~~~~---------~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~- 122 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKKARE---------SYVETELIFALAKTNRLAELEEFIN-----------GPNN- 122 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTT-----------CC---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCcc---------chhHHHHHHHHHHhCCHHHHHHHHc-----------CCcH-
Confidence 788888999999999999999988875322 1346778999999999999988874 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
.++..+|..++..|+|++|..+|.++ ..|..+|.++.++|+|++|++.++++.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------- 175 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN----------- 175 (449)
T ss_dssp --------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC-----------
Confidence 48999999999999999999999865 357889999999999999999999982
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004851 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
...+|..++.++...|+++.|..+....+ .. +.-+..+..+|.+.|++++|+.++++++.+-
T Consensus 176 ---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~----------ad~l~~lv~~Yek~G~~eEai~lLe~aL~le---- 237 (449)
T 1b89_A 176 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH----------ADELEELINYYQDRGYFEELITMLEAALGLE---- 237 (449)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----
T ss_pred ---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC----------HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc----
Confidence 14678889999999999999966655311 11 1223468889999999999999999998751
Q ss_pred CCCchhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004851 593 ERKSAFFGVALNQMGLACVQ--RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
.....++..+|.+|.+ .++..++++.|...+.+-+-+.. -.....|..+..+|...++++.|+...-+...
T Consensus 238 ----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~ 310 (449)
T 1b89_A 238 ----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 310 (449)
T ss_dssp ----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred ----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence 1234677777877764 45677788877776666210000 03344788999999999999999876554321
Q ss_pred ------HHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH--HHhhh
Q 004851 671 ------IREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL--DANSR 717 (727)
Q Consensus 671 ------~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al--~~~p~ 717 (727)
.+..+.. .+.+.+.++.....|. +....++ ..|..++ .+|+.
T Consensus 311 ~a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l-~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 311 DAWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLL-NDLLMVLSPRLDHT 360 (449)
T ss_dssp TTCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGH-HHHHHHHGGGCCHH
T ss_pred hhhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHH-HHHHHHHHhccCcH
Confidence 0111100 2445677888777777 5556667 7777777 55554
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=3.5e-17 Score=167.59 Aligned_cols=331 Identities=14% Similarity=0.105 Sum_probs=154.8
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHH
Q 004851 233 SSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM 312 (727)
Q Consensus 233 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (727)
..|+ .++|++++++. ++| .+|..+|.++...|++++|+..|.++- ....+.
T Consensus 15 ~~~~-ld~A~~fae~~-----------~~~---~vWs~La~A~l~~g~~~eAIdsfika~--------------D~~~y~ 65 (449)
T 1b89_A 15 HIGN-LDRAYEFAERC-----------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhC-----------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCC--------------CHHHHH
Confidence 4454 67777777665 122 368899999999999999999997742 122488
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 004851 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (727)
Q Consensus 313 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (727)
.++.++...|++++|+.+++.+++.. +. +.+...++.+|.+.|++.++..+++. | . .
T Consensus 66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p------n---~ 122 (449)
T 1b89_A 66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-----P------N---N 122 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC-----C-----------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C------c---H
Confidence 88999999999999999999888751 22 56677899999999999999988752 1 0 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (727)
.++..+|..+...|.|++|..+|.++ ..|..+|.++..+|+|++|++.++++.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------------- 175 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN------------- 175 (449)
T ss_dssp --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-------------
Confidence 36999999999999999999999866 367889999999999999999999882
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCC
Q 004851 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (727)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (727)
...+|..+..++...|+++.|..+..... . ++.. +..+..+|...|++++|+.+++.++.+.+..
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---------~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-- 240 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV-V---------HADE---LEELINYYQDRGYFEELITMLEAALGLERAH-- 240 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---------CHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH-h---------CHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--
Confidence 24778888999999999999966655411 1 3332 4468889999999999999999998765333
Q ss_pred CCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q 004851 553 QQSTVAGIEAQMGVMYYML--GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-- 628 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 628 (727)
..++..+|.+|.+- ++..+.++.|...+.+-+-+.. -..+..|..+..+|...++++.|+...-+...
T Consensus 241 -----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a 312 (449)
T 1b89_A 241 -----MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA 312 (449)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh
Confidence 56777888877654 4666777776655544221100 01235688899999999999999875544321
Q ss_pred ----HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004851 629 ----ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVV 669 (727)
Q Consensus 629 ----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 669 (727)
.++.+.. .+...++++.....|. +....++..+..++
T Consensus 313 ~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 313 WKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp CCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred hhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 1111111 2444567777777766 44455566555555
No 88
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.67 E-value=2.1e-15 Score=160.53 Aligned_cols=151 Identities=10% Similarity=-0.052 Sum_probs=143.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004851 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (727)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (727)
.+..+..+|+|++|+.++++++++.....+..++..+.++.+||.+|..+|+|++|+.++++++++.++.+|++||+.+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34556789999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004851 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
.+.+||.+|..+|++++|+.+|++|+++.+..+|++||.+......|+.++..+|++++|. ..|.++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae-~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE-FMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 8888886643
No 89
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.67 E-value=9.5e-15 Score=138.12 Aligned_cols=194 Identities=12% Similarity=0.148 Sum_probs=156.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 004851 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (727)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (727)
+..|++++|...++.... +.+....++..+|.++...|++++|+.++++++.+++.. ...+....++..
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~ 71 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDHTAEHRALHQ 71 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHH
Confidence 467899999885544322 244678999999999999999999999999999998874 346778899999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHH
Q 004851 523 VSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (727)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (727)
+|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+. ....+.+
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 149 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--QVAIACA 149 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--hHHHHHH
Confidence 99999999999999999999999998763344467788999999999999999999999999998876554 3445678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004851 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 651 (727)
+..+|.++...|++++|+.++++++.+.+.... ......++..++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence 899999999999999999999999999887543 23333444444443
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=1.2e-15 Score=172.10 Aligned_cols=207 Identities=10% Similarity=-0.060 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
.+++..+ ...|++++|+..|++++...-......+|....++..+|.+|...|++++|+..|++++++
T Consensus 395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------- 462 (681)
T 2pzi_A 395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------- 462 (681)
T ss_dssp THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------
T ss_pred chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---------
Confidence 3444444 7899999999999999821111111126888899999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004851 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
.|....+++.+|.++..+|++++|+..|++++++.+.. ..++.++|.+|..+|++++ +.+|++++++
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----- 529 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWST----- 529 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----
Confidence 44457889999999999999999999999999998766 3688999999999999999 9999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 004851 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGI 671 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 671 (727)
.+....+++++|.++..+|++++|+..|++++++ +|....+++++|.++...++.++| ...+++|+..
T Consensus 530 ---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 530 ---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 2334679999999999999999999999999998 899999999999999888876666 6677777766
Q ss_pred HHHh
Q 004851 672 REEK 675 (727)
Q Consensus 672 ~~~~ 675 (727)
....
T Consensus 599 l~~~ 602 (681)
T 2pzi_A 599 VEAL 602 (681)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 6544
No 91
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=2.7e-14 Score=143.84 Aligned_cols=198 Identities=13% Similarity=-0.009 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
+.....+...+..+...|++++|+..+.+++...... .........+..+|.++...|++++|+.++++++.+....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 4555677788899999999999999999999874321 1122345567789999999999999999999999876554
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004851 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
......+.++..+|.+|...|++++|+.+|++++.+....... ......+++++|.+|..+|++++|+.+|++++.+.
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334457789999999999999999999999999988765533 22234799999999999999999999999999997
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 004851 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIREEK 675 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 675 (727)
.... .......+++++|.+|..+|++++| ..+|++++.+.+..
T Consensus 227 ~~~~--~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 227 CRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHTT--BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhcC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 5432 2455678999999999999999999 88899999987654
No 92
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=2.4e-14 Score=135.30 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=158.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004851 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (727)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (727)
++..|++++|...++.... +.+....++..+|.++...|++++|+.++++++.+...... ....+.++..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--HTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 3567899999985544321 13467899999999999999999999999999999887653 4566788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004851 398 MGLICETKGDHEAALEHLVLASMTMIANDQDA-EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (727)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (727)
+|.++...|++++|+.++.+++.+....++.+ ..+.++..+|.++...|++++|+.++++++.+.+... +......+
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 149 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACA 149 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHH
Confidence 99999999999999999999999988877554 7888999999999999999999999999999877654 23445677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHH
Q 004851 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (727)
+..+|.++...|++++|+.++++++.+.+.. .+......++..++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAEL---EDSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHhcccch
Confidence 8999999999999999999999999998874 2344555555555544
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=5.2e-16 Score=138.84 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=127.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004851 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
.||.++...|++++|+..+++++...+.. ...++.+|.+|...|++++|+.+|++++++ .+....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-------~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-------SIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 47889999999999999999998877655 456789999999999999999999999997 233468
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcCCCC
Q 004851 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEI-LEFVVGIREEKLGTAN 680 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~g~~~ 680 (727)
++..+|.++...|++++|+.+|++++++ +|....+++.+|.+|...|++++|... +++++++ +
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------~ 130 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------F 130 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------C
Confidence 9999999999999999999999999999 899999999999999999999887765 5999988 6
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q 004851 681 PDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~ 699 (727)
|..+.++..++.++...|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 8888889999999988886
No 94
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=1.7e-14 Score=145.27 Aligned_cols=197 Identities=13% Similarity=-0.001 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCC
Q 004851 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (727)
.....+...+..+...|++++|+.++++++...... .........+..+|.++...|++++|+.+|++++.+....
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~- 148 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC-
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC---hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc-
Confidence 334455566788899999999999999998753210 0111224456679999999999999999999999965443
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 004851 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 631 (727)
......+.++.++|.+|..+|++++|+.+|+++++.+..... .......+++++|.+|..+|++++|+.++++++++..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333455678999999999999999999999999998877633 4556778999999999999999999999999999987
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHh
Q 004851 632 QECGPYHPDTLGVYSNLAGTYDAIGR-LDDAIEILEFVVGIREEK 675 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 675 (727)
.... .+....+++++|.+|..+|+ +++|+.+|++|+.+.+..
T Consensus 228 ~~~~--~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 228 RINS--MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HTTB--CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HcCc--HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 7543 46678899999999999995 699999999999998754
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=3.6e-15 Score=141.69 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 004851 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----------------MGVMYYMLGNYSDSYDS 580 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 580 (727)
+..+...|..+...|++++|+.+|++++.+.+.. ..+++. +|.+|...|++++|+.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567788999999999999999999999987765 356666 99999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC--h
Q 004851 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--L 658 (727)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~ 658 (727)
|++++++ .+....++..+|.++...|++++|+.+|++++++ +|+...+++.+|.+|...|+ .
T Consensus 77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999987 2334689999999999999999999999999999 89999999999999987764 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 659 DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 659 ~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+...+++++. ..| ...+++.+|.++...|++++|+ .+|+++++++|+
T Consensus 141 ~~~~~~~~~~~~--------~~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~ 189 (208)
T 3urz_A 141 KKLETDYKKLSS--------PTK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHC---C--------CCH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCC
T ss_pred HHHHHHHHHHhC--------CCc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence 455666665542 123 3457788999999999999999 999999999997
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=6e-15 Score=140.17 Aligned_cols=164 Identities=12% Similarity=0.134 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHcCChHHHHHH
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR----------------LADMYNRTGKLRESKSY 496 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 496 (727)
..+...|..+...|++++|+.+|++++.+ +|....+++. +|.+|...|++++|+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677899999999999999999999998 8888889998 99999999999999999
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCH--
Q 004851 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY-- 574 (727)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-- 574 (727)
|++++++ .|....++..+|.++...|++++|+.+|++++++.|.. ..+++.+|.+|+..|+.
T Consensus 77 ~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHHH
Confidence 9999999 45557889999999999999999999999999997765 57899999999877653
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
..+...+.+++. . .....+++.+|.++...|++++|+.+|++++++
T Consensus 141 ~~~~~~~~~~~~-------~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 141 KKLETDYKKLSS-------P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHC---C-------C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC-------C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555555432 1 223456788899999999999999999999998
No 97
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=1.2e-14 Score=146.39 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 004851 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (727)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (727)
.+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.++++++.+..... +....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHHH
Confidence 4667788899999999999999988764332222234456677899999999999999999999997643322 23345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC
Q 004851 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
..++..+|.+|...|++++|+.+|++++.+.+.. .........+++++|.+|..+|++++|+.++++++.+.... +.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~ 231 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NS 231 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TB
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc
Confidence 7799999999999999999999999999887664 22233334799999999999999999999999999998664 55
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 004851 554 QSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGE 593 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 593 (727)
....+.+++++|.+|..+|++++| ..+|++++.+.+..+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 566788999999999999999999 8889999998776543
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=1.5e-14 Score=145.67 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (727)
..+...+..+...|++++|+..+++++... ...+. ....+..+|.++...|++++|+.+|++++.+.... .+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~ 150 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE---EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccc---cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence 334556778889999999999999887522 22222 24455669999999999999999999999853221 12
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004851 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
......++..+|.+|...|++++|+.+|++++..++.. ....+..+.++.++|.+|..+|++++|+.++++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999999988774 2357778889999999999999999999999999999987
Q ss_pred CCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCC
Q 004851 550 APGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLRAIGER 594 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 594 (727)
. +.....+.++..+|.+|..+| ++++|+.+|++|+.+++..+..
T Consensus 229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 6 566677899999999999999 5799999999999998877654
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=6.9e-16 Score=174.02 Aligned_cols=210 Identities=11% Similarity=0.020 Sum_probs=167.1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
|....+++..+ ...|++++|+..|++++...-.. .....+....++..+|.++..+|++++|+..|++++++.+..
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~-~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDA-DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccc-cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 44444555555 77899999999999998211000 011144556789999999999999999999999999998765
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004851 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
..+++.+|.+|..+|++++|+..|++++++. +....++.++|.++..+|++++ +.+|++++++
T Consensus 467 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~- 529 (681)
T 2pzi_A 467 -------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST- 529 (681)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-
Confidence 5789999999999999999999999999972 2235789999999999999999 9999999999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHH-HHHHHH
Q 004851 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSR-KAQSLE 709 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A-~~~~l~ 709 (727)
+|....+++++|.+|..+|++++|+..|++++++ +|....++.++|.++...|+.+++ . ..++
T Consensus 530 -------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 593 (681)
T 2pzi_A 530 -------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTE-EQIR 593 (681)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCH-HHHH
T ss_pred -------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCH-HHHH
Confidence 8999999999999999999999999999999975 799999999999999887774444 3 4555
Q ss_pred HHHHHhhh
Q 004851 710 TLLDANSR 717 (727)
Q Consensus 710 ~al~~~p~ 717 (727)
+|++..+.
T Consensus 594 ~A~~~l~~ 601 (681)
T 2pzi_A 594 DAARRVEA 601 (681)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 55544433
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=9.7e-15 Score=135.51 Aligned_cols=171 Identities=13% Similarity=0.158 Sum_probs=150.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004851 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.......+..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.++++++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34567888999999999999999999999987662 233678999999999999999999999999988544
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
. ..++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.+|++++..
T Consensus 75 ~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 75 N-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3 4678899999999999999999999999862 123578899999999999999999999999998
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.|....++..+|.++...|++++|+.++++++.+.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 67778899999999999999999999999999874
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=1.7e-14 Score=139.06 Aligned_cols=181 Identities=11% Similarity=0.040 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc
Q 004851 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (727)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (727)
...++.+|..+...|++++|+..|++++...+.. .....+++.+|.+|...|++++|+..|+++++..+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-----~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-----H 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-----C
Confidence 4568899999999999999999999999876543 233468899999999999999999999999986332 2
Q ss_pred hhHHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH--------------
Q 004851 597 AFFGVALNQMGLACVQ------------------RYSINEAVELFEEARSILEQECGPYHPDTLGV-------------- 644 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------- 644 (727)
.....+++.+|.++.. .|++++|+..|+++++. .|+++....+
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHHH
Confidence 3345678888888876 57899999999999887 2223322222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...+|.+|...|++++|+..|+++++.. |.+|....+++.+|.+|.++|++++|+ ..++.++...|+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~-~~~~~l~~~~~~ 216 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAE-KVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCCSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHH-HHHHHHHhhCCC
Confidence 2678999999999999999999999874 556667789999999999999999999 999999998887
No 102
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-13 Score=147.79 Aligned_cols=235 Identities=10% Similarity=0.053 Sum_probs=198.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 004851 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET---------DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (727)
....|..+...|+|++|++.|.++++..+...... ......++..+|.+|...|++++|..++.+++.+.+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55678888999999999999999998743211000 023445789999999999999999999999999987
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 382 ~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
.... ......+...++.++...|+++.|+.++.+++............+.++..+|.+|...|+|.+|+.++++++..
T Consensus 87 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAK--SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCH--HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Hccc--hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 7642 23334567788999999999999999999999999988888889999999999999999999999999999887
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004851 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (727)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (727)
..... +.+....++..++.+|...|++++|..++++++.+.... ..++......+..+|.++...|++++|..+|.
T Consensus 165 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 165 FKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--YCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66543 467888999999999999999999999999999987764 33445567888999999999999999999999
Q ss_pred HHHHHHHhCC
Q 004851 542 KALKIYNDAP 551 (727)
Q Consensus 542 ~al~~~~~~~ 551 (727)
+++.......
T Consensus 241 ~a~~~~~~~~ 250 (434)
T 4b4t_Q 241 ESFESYHNLT 250 (434)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHhhhhh
Confidence 9999887663
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.61 E-value=2.1e-13 Score=131.23 Aligned_cols=190 Identities=10% Similarity=0.015 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
..++.+|..+...|++++|+..|++++.. .++.+....+++.+|.+|...|++++|+..|+++++....
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------ 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------
Confidence 45677788888888888888888888776 1223445577888888888888888888888888887322
Q ss_pred hHhHHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCH
Q 004851 513 PEEIASGLTDVSSIYES------------------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 574 (727)
.+....+++.+|.++.. .|++++|+..|+++++..|+... ...++..++.+..
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~----a~~a~~~l~~~~~----- 144 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY----TTDATKRLVFLKD----- 144 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT----HHHHHHHHHHHHH-----
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh----HHHHHHHHHHHHH-----
Confidence 33345567777777765 56788888888888777655421 1111111111110
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004851 575 SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (727)
Q Consensus 575 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (727)
........+|.+|...|++++|+..|+++++. .|+++....+++.+|.+|..
T Consensus 145 -----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 145 -----------------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-----YPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTSHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-----CcCCCccHHHHHHHHHHHHH
Confidence 01234457899999999999999999999998 22244455789999999999
Q ss_pred cCChHHHHHHHHHHHH
Q 004851 655 IGRLDDAIEILEFVVG 670 (727)
Q Consensus 655 ~g~~~~A~~~~~~al~ 670 (727)
+|++++|+..++++..
T Consensus 197 ~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 197 MQMNAQAEKVAKIIAA 212 (225)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHh
Confidence 9999999999997765
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=2.1e-15 Score=134.88 Aligned_cols=147 Identities=12% Similarity=0.162 Sum_probs=126.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHH
Q 004851 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (727)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (727)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++.+.. .
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence 4788899999999999999998766 66777889999999999999999999999999997765 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHhcCCC
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL-FEEARSILEQECGPY 637 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 637 (727)
.++..+|.+|...|++++|+.+|++++++ .+....++..+|.++...|++++|... +++|+++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------- 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------- 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence 78999999999999999999999999987 233467899999999999999887765 5999999
Q ss_pred CccHHHHHHHHHHHHHHcCC
Q 004851 638 HPDTLGVYSNLAGTYDAIGR 657 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~ 657 (727)
+|....++..++.++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 88888899999999988885
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.58 E-value=1.7e-13 Score=136.25 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=195.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 004851 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG--KLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (727)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (727)
.....++|+..+.+++.+ +|....+|+..+.++..+| ++++++.++.+++.. .|....+|+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~y~aW~ 107 (306)
T 3dra_A 45 AEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------NEKNYQIWN 107 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------CTTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------CcccHHHHH
Confidence 344457999999999999 8999999999999999999 999999999999998 444567788
Q ss_pred HHHHHH----Hhc---ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhC
Q 004851 522 DVSSIY----ESM---NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--DSYDSFKNAISKLRAIG 592 (727)
Q Consensus 522 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~ 592 (727)
..+.++ ... +++++++.++.+++...++. ..+|...+.++...|.++ +++.++.++++.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----- 175 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----- 175 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----
Confidence 888888 666 78999999999999988776 578999999999999998 999999999986
Q ss_pred CCCchhHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH-HHHHH
Q 004851 593 ERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD-AIEIL 665 (727)
Q Consensus 593 ~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 665 (727)
++....+|...+.+....+. ++++++++.+++.. +|....+|+.++.++...|+..+ ...++
T Consensus 176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 23345788999999988887 99999999999999 99999999999999999998655 44566
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH-Hhhh
Q 004851 666 EFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD-ANSR 717 (727)
Q Consensus 666 ~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~-~~p~ 717 (727)
.+++.+. ..++....++..|+.+|.+.|+.++|+ +.|+.+.+ .||-
T Consensus 245 ~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dpi 291 (306)
T 3dra_A 245 LQFVDLE-----KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNPI 291 (306)
T ss_dssp HTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCGG
T ss_pred HHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccChH
Confidence 6665431 124667789999999999999999999 99999997 7885
No 106
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.57 E-value=8.7e-14 Score=148.09 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchh
Q 004851 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (727)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (727)
....+..+..+|+|++|+.++++++++.....|..+ .++.++.+||.+|..+|+|++|+.++++++++.....+..++.
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334555677899999999999999999998888765 7889999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.+..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+..++..|+.++..++.+++|...|.++.+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987543
No 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=2.1e-13 Score=123.29 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=131.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004851 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
+....+.++..+|.++...|++++|+.++++++.+..... +......++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456677888899999999999999999999998877654 24555678889999999999999999999999998776
Q ss_pred CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004851 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (727)
. .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.+++++++
T Consensus 82 ~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3455667888999999999999999999999999988776 45556677888999999999999999999999998
Q ss_pred HHHH
Q 004851 587 KLRA 590 (727)
Q Consensus 587 ~~~~ 590 (727)
+.+.
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
No 108
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.55 E-value=4.8e-13 Score=120.84 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 389 LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (727)
Q Consensus 389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (727)
...+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|++++|+.++++++.+.....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-- 83 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-- 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Confidence 345678999999999999999999999999999888778888889999999999999999999999999999987764
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
+.+....++..+|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++++..
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999998763 34667788999999999999999999999999999876
Q ss_pred hC
Q 004851 549 DA 550 (727)
Q Consensus 549 ~~ 550 (727)
..
T Consensus 161 ~~ 162 (164)
T 3ro3_A 161 EV 162 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.54 E-value=8.1e-14 Score=128.47 Aligned_cols=170 Identities=16% Similarity=0.026 Sum_probs=137.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccch
Q 004851 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (727)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (727)
||.....++.+|..+...|+ +++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~- 70 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY- 70 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence 34445578899999999997 999999999999875 5568889999999999999999999999999875
Q ss_pred hccCccchHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 004851 297 IEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (727)
Q Consensus 297 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (727)
+ ++.. +..++.+. ...+...+|+..|+++++. +|....+++.+|.++...|++++|+..|++
T Consensus 71 ----p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 71 ----Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp ----C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3 3221 22233332 2333445689999999998 789999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004851 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (727)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (727)
++...|..... .++..+|.++...|++++|+..|++++.
T Consensus 134 ~l~~~p~~~~~------~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 134 ILKVNLGAQDG------EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCTTTTTT------HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCcccChH------HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99987765322 4688999999999999999999998864
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=1.2e-13 Score=119.10 Aligned_cols=117 Identities=13% Similarity=0.226 Sum_probs=106.7
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004851 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
++..+..+..+|..|+..|+|++|+.+|++++++ .+....++.++|.++..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 3556788999999999999999999999999987 2334689999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
+|....+++.+|.+|..+|++++|+..|++++++ +|++..++..|+.++
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999998 688888998888764
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.52 E-value=2e-13 Score=117.65 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=100.1
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004851 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
.|..+..+..+|..++..|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 3557889999999999999999999999999999 8999999999999999999999999999999987
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....+++.+|.+|..+|++++|+ ..|+++++++|+
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~l~P~ 113 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQ-RAYEDALQVDPS 113 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcC
Confidence 6888999999999999999999999 999999999997
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=2.2e-13 Score=136.34 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004851 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (727)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (727)
....+..+|..+...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|++++...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------- 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQD------- 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-------
Confidence 45678899999999999999999999999998766 5789999999999999999999999987641
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004851 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
+ .........+..+...++.++|+..|++++.. +|+...+++.+|.+|...|++++|+..|++++..
T Consensus 182 p-~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---- 248 (287)
T 3qou_A 182 Q-DTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---- 248 (287)
T ss_dssp C-SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred c-chHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----
Confidence 1 23455666777788889999999999999999 8999999999999999999999999999999987
Q ss_pred cCCCChhH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 676 LGTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 676 ~g~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+|.. ..++..|+.++...|+.++|. ..|++++..
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a~-~~~r~al~~ 284 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDALA-SXYRRQLYA 284 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHHH-HHHHHHHHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcHH-HHHHHHHHH
Confidence 5666 889999999999999999999 999998864
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.51 E-value=7.7e-14 Score=128.59 Aligned_cols=164 Identities=14% Similarity=0.171 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCch
Q 004851 518 SGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSA 597 (727)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 597 (727)
..+..+|..+...|++++|+..|++++...|.. ..++..+|.++...|++++|+.+|++++... + . +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~-~ 73 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLEY----Q-D-N 73 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-C-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-C-h
Confidence 357789999999999999999999999999877 5789999999999999999999999987641 1 1 1
Q ss_pred hHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 598 FFGVALNQMGLAC-VQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 598 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
..+..++.+. ...+...+|+..|++++.. +|+...+++.+|.++...|++++|+..|++++.+
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 137 (176)
T 2r5s_A 74 ---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV----- 137 (176)
T ss_dssp ---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----
T ss_pred ---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----
Confidence 2333334332 2333445689999999998 8998999999999999999999999999999965
Q ss_pred CCCChhH--HHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 677 GTANPDV--DDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 677 g~~~p~~--~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+|.. ..++..++.++...|+.++|+ ..|++++..
T Consensus 138 ---~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~~al~~ 173 (176)
T 2r5s_A 138 ---NLGAQDGEVKKTFMDILSALGQGNAIA-SKYRRQLYS 173 (176)
T ss_dssp ---CTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHHHHHHH
T ss_pred ---CcccChHHHHHHHHHHHHHhCCCCcHH-HHHHHHHHH
Confidence 4543 568999999999999999999 999998863
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.51 E-value=2e-12 Score=128.51 Aligned_cols=238 Identities=8% Similarity=-0.069 Sum_probs=197.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004851 405 KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482 (727)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 482 (727)
....++|+..+.+++.+ .|....+|+..+.++..+| ++++++.++..++.. +|....+|+..+.
T Consensus 46 ~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHH
Confidence 34457899999999864 6777889999999999999 999999999999998 8999999999999
Q ss_pred HH----HHc---CChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHhCCCC
Q 004851 483 MY----NRT---GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE--QAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 483 ~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~ 553 (727)
++ ... +++++++.++.+++.. +|....+|...+.++...|.++ ++++++.++++..+..
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~---------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--- 179 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSS---------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--- 179 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC---
Confidence 99 777 8999999999999998 4555789999999999999998 9999999999887665
Q ss_pred CccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH-HHHHHHHH
Q 004851 554 QSTVAGIEAQMGVMYYMLGN------YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE-AVELFEEA 626 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 626 (727)
..+|...+.++...+. +++++.++.+++.+ .+....+|+.++.++...|+..+ ...++.++
T Consensus 180 ----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 180 ----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4788899999988887 89999999999986 23345789999999999988544 44566665
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 004851 627 RSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAE 692 (727)
Q Consensus 627 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~ 692 (727)
+.+- ...+....++..+|.+|...|+.++|+++|+.+.+. .+|.....+...+.
T Consensus 248 ~~~~-----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-------~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 248 VDLE-----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-------YNPIRSNFWDYQIS 301 (306)
T ss_dssp EEGG-----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCGGGHHHHHHHHH
T ss_pred Hhcc-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHh
Confidence 5531 113667779999999999999999999999998752 27877777766554
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=4.6e-13 Score=134.02 Aligned_cols=170 Identities=15% Similarity=0.014 Sum_probs=150.1
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchh
Q 004851 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI 297 (727)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (727)
|.....++.+|..+...|+ +++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLS---------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence 7888999999999999998 999999999999874 4457789999999999999999999999998875
Q ss_pred ccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 004851 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (727)
Q Consensus 298 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (727)
++.. ..+...+..+...++.++|+..|++++.. +|....+++.+|.++...|++++|+..|.+++
T Consensus 182 ---p~~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 182 ---QDTR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp ---CSHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---cchH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3222 23666777788899999999999999999 79999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004851 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (727)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (727)
...|...+ ..++..++.++...|+.++|+..|++++.
T Consensus 247 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAAD------GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGG------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hccccccc------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99876532 25789999999999999999999998875
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=6.1e-11 Score=131.18 Aligned_cols=412 Identities=10% Similarity=-0.061 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHH
Q 004851 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318 (727)
Q Consensus 239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 318 (727)
.+-+..|++++... |.....|..++......+.++.+...|++++... +.. ...|...+..-
T Consensus 49 ~d~i~~lE~~l~~n---------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~----~~lW~~Yi~~E 110 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ---------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLM----ANIWCMRLSLE 110 (679)
T ss_dssp SCHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCC----HHHHHHHHHHH
Confidence 34455566666541 4457778888888889999999999999999886 222 23477777777
Q ss_pred HHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCH----HH----HHHHHHHHHHHHHh-cCCC
Q 004851 319 AMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF----SE----AQKFCQMALDIHKD-NGSP 386 (727)
Q Consensus 319 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~~~~-~~~~ 386 (727)
...|+ ++.+..+|++++..... +....+|..........++. ++ ....|++|+..... ..
T Consensus 111 ~~~~~~~~~~~v~~lfeRal~~~~~------~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~-- 182 (679)
T 4e6h_A 111 FDKMEELDAAVIEPVLARCLSKELG------NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP-- 182 (679)
T ss_dssp HTC--CCCHHHHHHHHHHHTCSSSC------CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--
T ss_pred HhhCCcchHHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--
Confidence 88888 99999999999987210 13334666655555455543 33 44677777765433 22
Q ss_pred CCHHHHHHHHHHHHHH---------HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-------------HHH
Q 004851 387 ASLEEAADRRLMGLIC---------ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDT-------------YLS 444 (727)
Q Consensus 387 ~~~~~a~~~~~la~~~---------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-------------~~~ 444 (727)
... .+|....... ...++.+.+..+|.+++.+ +.. ....+|...... -..
T Consensus 183 ~s~---~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~ 254 (679)
T 4e6h_A 183 KSI---QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGEL 254 (679)
T ss_dssp SCH---HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHH
T ss_pred cch---HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 122 2233332222 2344567788888887631 111 111222111111 011
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcC--CC----------------ChhHHHHHHHHHHHHHHcC-------ChHHHHHHHHH
Q 004851 445 LSRYDEAGFAYQKALTAFKTNKG--EN----------------HPAVASVFVRLADMYNRTG-------KLRESKSYCEN 499 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~--~~----------------~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~ 499 (727)
..+|+.|...+.+.-.+...+.. +. .......|......-...+ ........|++
T Consensus 255 ~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~ 334 (679)
T 4e6h_A 255 SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQ 334 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHH
Confidence 12344444444332222111110 00 0122344444443322221 12345678999
Q ss_pred HHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Q 004851 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSY 578 (727)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 578 (727)
++..+ +....+|...+..+...|+.++|. ..|++|+...|.. ..++..++.+....|++++|.
T Consensus 335 aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 335 AAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHH
Confidence 99883 335778999999999999999997 9999999876544 356778899999999999999
Q ss_pred HHHHHHHHHHHHh-------CCCC-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004851 579 DSFKNAISKLRAI-------GERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (727)
Q Consensus 579 ~~~~~al~~~~~~-------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 644 (727)
.+|++++...... .+.. ......+|...+.+..+.|+.+.|..+|.+|++.. . +....+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~---~~~~~l 471 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----K---LVTPDI 471 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----G---GSCTHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCChHH
Confidence 9999999865311 0100 01245578888888888999999999999998751 0 112345
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhh
Q 004851 645 YSNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 716 (727)
Q Consensus 645 ~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p 716 (727)
|...|.+....+ +++.|..+|+.+++.+ |.....+...+.+....|+.+.|. ..|++++...|
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~ 535 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence 666677766665 4999999999999875 444556667788888999999999 99999998776
No 117
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.49 E-value=5.3e-13 Score=139.66 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=116.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004851 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
..|+|++|+.++++++++..+..+..++..+.++.+||.+|..+|+|++|+.++++++.+.++.+|++||+.+..+.+||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004851 650 GTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (727)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La 691 (727)
.+|..+|++++|+.+|++|+++.+..+|++||.+.++..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.49 E-value=3.4e-13 Score=130.71 Aligned_cols=210 Identities=11% Similarity=-0.016 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHH-------HHHHHhcccHHHHHHHHHHHHHHH
Q 004851 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV-------SSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
..++..|.-+ ..+++..|...|.+++.+ .|..+.+|..+ +.++...++..+++..+++++.+.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~---------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~ 77 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNY---------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS 77 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHh---------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555 589999999999999999 66778999999 899999999999999999999977
Q ss_pred HhCCCCCcc--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh
Q 004851 548 NDAPGQQST--------------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR 613 (727)
Q Consensus 548 ~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 613 (727)
+...+.... ...+...++.++...|+|++|...|..++.. .+ ... +.+.+|.++.+.
T Consensus 78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~p-~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------GS-EHL-VAWMKAVVYGAA 148 (282)
T ss_dssp GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------TC-HHH-HHHHHHHHHHHT
T ss_pred hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CC-chH-HHHHHHHHHHHc
Confidence 765443322 2456677899999999999999999877642 22 234 888999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHH
Q 004851 614 YSINEAVELFEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD-VDDEKRRLA 691 (727)
Q Consensus 614 g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~-~~~~~~~La 691 (727)
+++++|+.+|+++... + +|.. ..+++.+|.++..+|++++|+.+|++++. ++..|. ..++++.+|
T Consensus 149 ~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~g 215 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLA 215 (282)
T ss_dssp TCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHH
Confidence 9999999999876543 0 2322 45899999999999999999999999974 232265 788999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++.++|+.++|. ..|++++..+|.
T Consensus 216 laL~~lGr~deA~-~~l~~a~a~~P~ 240 (282)
T 4f3v_A 216 MARRSQGNESAAV-ALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHH-HHHHHHHhcCCc
Confidence 9999999999999 999999999986
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.48 E-value=5.2e-14 Score=125.06 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004851 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
.+....+++.+|.++...|++++|+.+|++++.+ +|....+|+++|.+|..+|++++|+.+|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 3456789999999999999999999999999999 8999999999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|+.+.+++++|.+|..+|++++|+ ..|++++++.|+
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~-~~~~~al~l~~~ 136 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAK-ECFELVIQHSND 136 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 6888889999999999999999999 999999999987
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.48 E-value=4e-13 Score=148.90 Aligned_cols=156 Identities=10% Similarity=0.067 Sum_probs=126.6
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 004851 530 MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (727)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 609 (727)
.|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++++ .+....++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 478999999999999887655 578999999999999999999999999985 22346789999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004851 610 CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (727)
Q Consensus 610 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (727)
+..+|++++|+.+|++++++ +|....++..+|.+|..+|++++|+.+|++++++ +|....++..
T Consensus 67 ~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 130 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQ 130 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999999999999999 8888899999999999999999999999999987 5777889999
Q ss_pred HHHHHHHh---CChhHHHHHHHHHHHHHhhh
Q 004851 690 LAELLKEA---GRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 690 La~~~~~~---g~~~~A~~~~l~~al~~~p~ 717 (727)
++.++... |++++|. ..|+++++.+|.
T Consensus 131 l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~ 160 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLS-AQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHTTCCTTHHHHH-HHHHHHHHHTCC
T ss_pred HHHHHHHhhccccHHHHH-HHHHHHHhcCCc
Confidence 99999999 9999999 999999999987
No 121
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.47 E-value=7.1e-13 Score=139.18 Aligned_cols=131 Identities=13% Similarity=-0.025 Sum_probs=124.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004851 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (727)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 646 (727)
-+..+|+|++|+..+++++++.....+..++..+.++.++|.+|..+|+|++|+.++++++.+.++.+|++||+.+..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999999888877778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004851 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (727)
+||.+|..+|++++|+.+|++|+++.+..+|++||.+..++.+|+.+...+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.47 E-value=1.8e-12 Score=123.24 Aligned_cols=177 Identities=18% Similarity=0.134 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 004851 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528 (727)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 528 (727)
.+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|+++++. + ...+++.||.+|.
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g-----~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------G-----DGDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T-----CHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C-----CHHHHHHHHHHHH
Confidence 3577788887763 34688999999999999999999999999875 1 2568899999999
Q ss_pred hcc----cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCCchhHH
Q 004851 529 SMN----ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (727)
Q Consensus 529 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (727)
. + ++++|+.+|+++.+. + ...+++.+|.+|.. .+++++|+.+|+++++.- .....+
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~-----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~ 125 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEA-----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAV 125 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchH
Confidence 8 7 999999999999653 1 14688899999998 899999999999998641 111246
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHH
Q 004851 601 VALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G-----RLDDAIEILEFVVG 670 (727)
Q Consensus 601 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~ 670 (727)
.+++.||.+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+.+|+++++
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 899999999999 88999999999999875 33445899999999874 3 89999999999997
Q ss_pred H
Q 004851 671 I 671 (727)
Q Consensus 671 ~ 671 (727)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 5
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.46 E-value=8.8e-13 Score=125.48 Aligned_cols=178 Identities=11% Similarity=0.027 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004851 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (727)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (727)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. +. ..+++.+|.+|..
T Consensus 3 ~eA~~~~~~aa~~-----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~----~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GD----GDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT-----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHc
Confidence 3577888888765 12568999999999999999999999999764 21 4688899999998
Q ss_pred cC----CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCc--c
Q 004851 571 LG----NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHP--D 640 (727)
Q Consensus 571 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~--~ 640 (727)
+ ++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|+++++. .+ .
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcc
Confidence 7 999999999999652 135789999999998 88999999999999986 44 4
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh-C-----ChhHHHHHHHHH
Q 004851 641 TLGVYSNLAGTYDA----IGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA-G-----RVRSRKAQSLET 710 (727)
Q Consensus 641 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~-g-----~~~~A~~~~l~~ 710 (727)
...++++||.+|.. .+++++|+.+|+++++. +....+++.||.+|... | ++++|+ .+|++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~-~~~~~ 193 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL-HWLNV 193 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH-HHHHH
Confidence 57899999999999 89999999999999874 23345889999999875 3 899999 99999
Q ss_pred HHHHhhh
Q 004851 711 LLDANSR 717 (727)
Q Consensus 711 al~~~p~ 717 (727)
+++....
T Consensus 194 A~~~g~~ 200 (212)
T 3rjv_A 194 SCLEGFD 200 (212)
T ss_dssp HHHHTCH
T ss_pred HHHcCCH
Confidence 9987543
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.46 E-value=4.3e-12 Score=122.94 Aligned_cols=222 Identities=12% Similarity=-0.003 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------HHHHHHcCChhHHHHHHHHhcc
Q 004851 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-------AAIYCSLGQYNEAIPVLEQSIE 293 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~ 293 (727)
...++..|.-+ ..++ +..|+++|.+++.+. |....+|..+ +.++...+++.+++..+++++.
T Consensus 7 ~~~~~~~~~~~-~~~d-~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 7 LASLFESAVSM-LPMS-EARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp HHHHHHHHHHH-TTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred HHHHHHHHhcc-cCCC-HHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777776 5776 999999999999973 6678889999 8999999999999999999999
Q ss_pred cchhccCccch------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004851 294 IPVIEEGQEHA------------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (727)
Q Consensus 294 ~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (727)
+.+........ ...-.+...++.++...|+|++|...|..++.. .|... +++.+|.+++
T Consensus 76 l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~ 146 (282)
T 4f3v_A 76 ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYG 146 (282)
T ss_dssp CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHH
T ss_pred CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHH
Confidence 76543332222 011335677899999999999999999988765 57777 9999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHH
Q 004851 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGD 440 (727)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~ 440 (727)
..++|++|+.+|+.+.... +......+++.+|.++..+|++++|+.+|++++. ....|. ...+++.+|.
T Consensus 147 ~~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 147 AAERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAM 216 (282)
T ss_dssp HTTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHH
Confidence 9999999999998664331 1112235799999999999999999999998862 222144 7778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004851 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (727)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (727)
++..+|+.++|...|++++.. +|. ..+...|.
T Consensus 217 aL~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL~ 248 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTT--------HPE-PKVAAALK 248 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence 999999999999999999998 676 66555543
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=2.9e-13 Score=138.76 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=141.0
Q ss_pred hcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------chhHHH
Q 004851 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGV 601 (727)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~ 601 (727)
.++++++|+..+++++...+.. +.++..+|.+|+..|++++|+.+|++++.+........ .+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~-------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQ-------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4677788888888888776554 67899999999999999999999999999854321100 112357
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
++.++|.++..+|++++|+.+|++++++ +|....+++.+|.+|..+|++++|+.+|++++++ +|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 9999999999999999999999999999 8889999999999999999999999999999987 68
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
....++..|+.++..+|++++|....|++++...+.
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999999999954678887765443
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.43 E-value=3.2e-13 Score=119.96 Aligned_cols=102 Identities=10% Similarity=0.011 Sum_probs=94.0
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004851 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
.+....+++.+|.++...|++++|+.+|++++.+ .+....+|..+|.++..+|++++|+.+|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 3445788999999999999999999999999987 2335689999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+|+...+++++|.+|..+|++++|+.+|++++++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999987
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.43 E-value=2e-11 Score=121.85 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=186.8
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHhcCCCCC
Q 004851 443 LSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 443 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 511 (727)
...|.+. +|+.++.+++.+ +|....+|+..+.++...+. +++++.+++.++..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence 3556665 799999999998 89999999999999988776 68899999999888
Q ss_pred ChHhHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 004851 512 PPEEIASGLTDVSSIYESMNE--LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN-YSDSYDSFKNAISKL 588 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 588 (727)
+|....+|...+.++...++ +++++.++.+++++.+.. ..+|...+.++...|. +++++.++.+++..
T Consensus 104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~- 174 (331)
T 3dss_A 104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR- 174 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence 45557889999999999994 899999999999987766 5789999999999998 69999999999986
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 004851 589 RAIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 654 (727)
.+....+|+..+.++... +.++++++++.+++.+ +|+...+|+.+..++..
T Consensus 175 -------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 -------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp -------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHS
T ss_pred -------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 233457888888888877 5689999999999999 89999999877777666
Q ss_pred c-----------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH---HhCChhHHHHHHHHHHHHHhhh
Q 004851 655 I-----------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK---EAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 655 ~-----------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~---~~g~~~~A~~~~l~~al~~~p~ 717 (727)
. +.++++++++.+++++ .|+...++..++.+.. ..|..++.. ..|.+++++||-
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~Dp~ 307 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPM 307 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHH-HHHHHHHHHCGG
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHH-HHHHHHHHhCcc
Confidence 5 4578888888888877 5666666655554433 357788888 999999999996
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=4.8e-12 Score=110.09 Aligned_cols=134 Identities=20% Similarity=0.342 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.+++.+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.+|++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 357789999999999999999999998752 123567888999999999999999999999988 6
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|. ..+++++..+|.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHccCCC
Confidence 777788999999999999999999999999986 4666788999999999999999999 999999998874
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=1.5e-12 Score=144.27 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 004851 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (727)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (727)
.|++++|+..|+++++. .|....++..+|.++...|++++|+.+|++++++ .+....++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLG 64 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------STTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Confidence 47899999999999987 7888899999999999999999999999999988 344477899999
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 004851 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN 604 (727)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 604 (727)
.+|..+|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++. +....++.
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 99999999999999999999986554 5788999999999999999999999999872 22357889
Q ss_pred HHHHHHHHh---CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004851 605 QMGLACVQR---YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 605 ~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
.+|.++... |++++|+..|+++++. +|.....+..++
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 169 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--------GVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH--------TCCCSCHHHHTT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc--------CCcccChHHHhC
Confidence 999999999 9999999999999998 666555666665
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.41 E-value=4.7e-12 Score=109.24 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.+.++.++|.+++..|+|++|+.+|++|+++ +|....++.++|.+|..+|++++|+..|++++++..... .
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-A 77 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-h
Confidence 5678899999999999999999999999999 899999999999999999999999999999999865432 3
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++....++.++|.++..+|++++|+ ++|++++..+|+
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~~~~ 115 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSEFRD 115 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence 34556789999999999999999999 999999998775
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.38 E-value=2e-12 Score=132.45 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=139.4
Q ss_pred HcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCC--------ccH
Q 004851 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ--------STV 557 (727)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~ 557 (727)
.++++++|+..|++++.. .+..+.++..+|.++...|++++|+.+|++++.+.+...... ...
T Consensus 125 ~L~~~~~A~~~~~~a~~~---------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE---------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEEECCCCGGGCCHHH---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 456778888888887776 566788999999999999999999999999999987652211 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004851 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
..++.++|.+|..+|++++|+.+|++++.+. +....+++.+|.+|..+|++++|+.+|++++++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-------- 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence 5789999999999999999999999999972 234679999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHH
Q 004851 638 HPDTLGVYSNLAGTYDAIGRLDDA-IEILEFVVGIRE 673 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 673 (727)
+|....++..++.++..+|++++| ...|++++....
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888899999999999999999999 567787776543
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.38 E-value=6.9e-12 Score=108.20 Aligned_cols=108 Identities=10% Similarity=0.174 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
++.+.++.++|..++..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..|++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 566788999999999999999999999999999 44557889999999999999999999999999999988
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
......++.++..+|.++..+|++++|+.+|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666677889999999999999999999999999875
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.38 E-value=2e-12 Score=114.98 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
+....+++.+|.++...|++++|+.+|++++.+ +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 84 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----- 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 446778999999999999999999999999999 8888999999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|+...+++.+|.+|...|++++|+ ..|+++++++|.
T Consensus 85 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 121 (148)
T 2vgx_A 85 ---DIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQELIAN 121 (148)
T ss_dssp ---STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTT
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCcC
Confidence 5777889999999999999999999 999999999986
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.37 E-value=3.9e-12 Score=113.05 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHH
Q 004851 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (727)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 618 (727)
.|++++.+.+. ....++.+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++
T Consensus 9 ~~~~al~~~p~-------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 9 TIAMLNEISSD-------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp SHHHHTTCCHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHcCCHh-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHH
Confidence 45555544433 3678899999999999999999999999986 23346789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004851 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRR 689 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~ 689 (727)
|+.+|++++.+ +|+...+++++|.+|..+|++++|+.+|++++++. +.+|........
T Consensus 74 A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~ 131 (148)
T 2vgx_A 74 AIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHH
T ss_pred HHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHH
Confidence 99999999999 78888899999999999999999999999999885 456665444433
No 135
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.37 E-value=6.6e-12 Score=109.80 Aligned_cols=117 Identities=12% Similarity=-0.037 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP----YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
.+..+..+|..+...|+|++|+..|++|+++....... ..|....+|.++|.++..+|++++|+..|.++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 35678889999999999999999999999993220000 00113449999999999999999999999999998654
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 675 KLGTANPDVDDEK----RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 675 ~~g~~~p~~~~~~----~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.. +-+|+...+| +++|.++..+|++++|+ ..|+++++++|+
T Consensus 90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl-~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAM-PEFKKVVEMIEE 134 (159)
T ss_dssp HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence 43 5578999999 99999999999999999 999999999998
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=3.1e-11 Score=109.48 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
.+..+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 76 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 35678899999999999999999999999862 223678999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK--RRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~--~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+|....+++.+|.++..+|++++|+.+|++++.+ +|....++ ..++..+...|++++|+ ..++++..+
T Consensus 77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~ 146 (166)
T 1a17_A 77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSV 146 (166)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH-HcccchHHH
Confidence 7888889999999999999999999999999987 34445555 45555588999999999 999999887
Q ss_pred hhh
Q 004851 715 NSR 717 (727)
Q Consensus 715 ~p~ 717 (727)
.+.
T Consensus 147 ~~~ 149 (166)
T 1a17_A 147 VDS 149 (166)
T ss_dssp HHH
T ss_pred hcc
Confidence 766
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.36 E-value=4.4e-12 Score=120.76 Aligned_cols=139 Identities=12% Similarity=0.007 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
..++.+|.++...|++++|+.+|++++. . ...++..+|.++...|++++|+.+|++++.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 4567899999999999999999998841 1 2468999999999999999999999999999 7
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 004851 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL--------GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLET 710 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~ 710 (727)
|....+++.+|.+|..+|++++|+.+|++++.+..... ....|....+++.+|.+|...|++++|. ..|++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 146 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHHH
Confidence 88889999999999999999999999999998631100 0024567799999999999999999999 99999
Q ss_pred HHHHhhh
Q 004851 711 LLDANSR 717 (727)
Q Consensus 711 al~~~p~ 717 (727)
+++++|.
T Consensus 147 al~~~p~ 153 (213)
T 1hh8_A 147 ATSMKSE 153 (213)
T ss_dssp HHTTCCS
T ss_pred HHHcCcc
Confidence 9999985
No 138
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.35 E-value=3.6e-10 Score=112.86 Aligned_cols=238 Identities=9% Similarity=-0.002 Sum_probs=188.8
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 403 ETKGDHE-AALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR----------YDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 403 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
...|++. +|+.++.+++. ..|....+|+..+.++...+. +++++.++..++.. +|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~P 105 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NP 105 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHcCCCCHHHHHHHHHHHH------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CC
Confidence 3456655 78999988874 577788899999999888776 68889999999887 89
Q ss_pred hHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHH
Q 004851 472 AVASVFVRLADMYNRTGK--LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE-LEQAIKLLQKALKIYN 548 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 548 (727)
....+|...+.++...++ +++++.++.++++. ++....+|...+.+....|. ++++++++.+++...+
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 999999999999999994 89999999999998 45557889999999999998 6999999999998866
Q ss_pred hCCCCCccHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHh-
Q 004851 549 DAPGQQSTVAGIEAQMGVMYYML--------------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR- 613 (727)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~- 613 (727)
.. ..+|..++.++... +.+++++.++.+++.+. +....+|+.+..++...
T Consensus 177 ~N-------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--------P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 177 SN-------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp CC-------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHSSS
T ss_pred CC-------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcc
Confidence 55 46888888888877 45888999999998862 22345666555554444
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHhcCCCC
Q 004851 614 ----------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA---IGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 614 ----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
+.++++++++.+++++ .|+...++..++.+... .|..++...++.+.+++ +
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------D 305 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------D 305 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------C
T ss_pred CccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------C
Confidence 4578999999999998 78877666666655433 57788999999999987 7
Q ss_pred hhHHHHHHHHHHHH
Q 004851 681 PDVDDEKRRLAELL 694 (727)
Q Consensus 681 p~~~~~~~~La~~~ 694 (727)
|....-|..|+.-+
T Consensus 306 p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 306 PMRAAYLDDLRSKF 319 (331)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 87776666665443
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.34 E-value=1.6e-11 Score=122.37 Aligned_cols=194 Identities=15% Similarity=0.075 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004851 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
+..+..+|..++..|++++|+.+|++++.. .|....++.++|.+|...|++++|+..+++++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999998 7888899999999999999999999999999987
Q ss_pred ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
.+....+++.+|.+|..+|++++|+.+|++++.+.+.............. .. .++..... .....
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~----~~------~~~~~~~~----~~~~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL----RI------AKKKRWNS----IEERR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH----HH------HHHHHHHH----HHHTC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH----HH------HHHHHHHH----HHHHH
Confidence 34457789999999999999999999999999999876332222211111 11 11111111 11111
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 004851 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-GRLDDAIEILEFVVG 670 (727)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 670 (727)
... .. .+...++.++ .|++++|++.|+++++. +|........++.++... +.+++|..+|.++.+
T Consensus 133 ~~~-~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 133 IHQ-ES---ELHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCC-CC---HHHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hhh-hH---HHHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 111 12 2333445443 68999999999999987 788777778888777766 778889999988765
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=3.4e-11 Score=103.69 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
.+..+..+|..++..|++++|+.+|++++.+. +....++..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 35678899999999999999999999999872 224689999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004851 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKE 696 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~ 696 (727)
+|....+++.+|.++..+|++++|+..|++++.+..... ..|....++..++.+..+
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999853321 237777888888777654
No 141
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=4.1e-11 Score=104.04 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
.+++.+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 35788999999999999999999999887 56677889999999999999999999999999882
Q ss_pred hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++..
T Consensus 66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 2235678899999999999999999999999875433 467888999999999999999999998875
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.33 E-value=3.9e-11 Score=120.24 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC
Q 004851 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKP 507 (727)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 507 (727)
+....++..+..+....+..++|+.++.+++.+ +|....+|+..+.++...| .+++++.++++++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---- 118 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---- 118 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence 445555666666666777778999999999998 8999999999999999999 599999999999987
Q ss_pred CCCCChHhHHHHHHHHHHHHHhc-c-cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHH--------HH
Q 004851 508 VPGVPPEEIASGLTDVSSIYESM-N-ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--------DS 577 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A 577 (727)
.|....+|+..+.++... + ++++++.++.+++...++. ..+|...+.++...|.++ ++
T Consensus 119 -----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 119 -----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp -----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence 444577899999999887 7 8899999999988776555 478888888888888777 88
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004851 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (727)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 650 (727)
+.++.++++. .+....+|+..+.++...++ ++++++++.+++.+ +|....+++.+..
T Consensus 187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 9999988886 23345789999999998887 79999999999999 9999999999999
Q ss_pred HHHHcCChHH------------HHH-HHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004851 651 TYDAIGRLDD------------AIE-ILEFVVGIREEKLGT-----ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL 712 (727)
Q Consensus 651 ~~~~~g~~~~------------A~~-~~~~al~~~~~~~g~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al 712 (727)
++...|+... .+. .+...........+. ..+....++..|+.+|...|+.++|. +.++.+.
T Consensus 251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~ 329 (349)
T 3q7a_A 251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS 329 (349)
T ss_dssp HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence 9998887511 000 011112222222221 12456778999999999999999999 9999886
Q ss_pred -HHhh
Q 004851 713 -DANS 716 (727)
Q Consensus 713 -~~~p 716 (727)
+.||
T Consensus 330 ~~~dp 334 (349)
T 3q7a_A 330 SEYDQ 334 (349)
T ss_dssp HTTCG
T ss_pred hhhCh
Confidence 5565
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.32 E-value=3.4e-12 Score=120.03 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=115.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC------
Q 004851 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK------ 595 (727)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 595 (727)
..+......|++++|.+.+.......... +..+..+|.+++..|++++|+.+|.+++.+........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQS-------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 81 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 34445555666666666665444333222 45677788888888888888888888877543211100
Q ss_pred --chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004851 596 --SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 596 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
......++.++|.++...|++++|+.+|++++.+ +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 151 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--
Confidence 0012478999999999999999999999999999 8888899999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 674 EKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 674 ~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+|....++..++.++...|+..++....+..++..
T Consensus 152 ------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 ------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ------STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67788899999999999999888874455555543
No 144
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.32 E-value=4.1e-11 Score=125.40 Aligned_cols=122 Identities=8% Similarity=0.035 Sum_probs=113.9
Q ss_pred HhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004851 528 ESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (727)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (727)
...|+|++|+.++++++++.....|..+ .++.++.++|.+|..+|+|++|+.++++++.+..+..+..++..+..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999999998878765 788899999999999999999999999999999999888899999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004851 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 607 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
|.+|..+|++++|+.+|++|+++....+|++||.+..+..+|.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999988777664
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=6.3e-11 Score=107.42 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCC
Q 004851 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (727)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 34677889999999999999999999999998 67788999999999999999999999999999983
Q ss_pred CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 004851 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (727)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (727)
+....++..+|.++...|++++|+.+|++++.+.+.. .....+..++..+...|++++|+.++.++..+..
T Consensus 78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3346789999999999999999999999999886543 1223335566668899999999999999988776
Q ss_pred HhC
Q 004851 590 AIG 592 (727)
Q Consensus 590 ~~~ 592 (727)
...
T Consensus 149 ~~~ 151 (166)
T 1a17_A 149 SLD 151 (166)
T ss_dssp HCC
T ss_pred ccc
Confidence 543
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.32 E-value=1.7e-11 Score=110.93 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---C-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004851 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER---K-------SAFFGVALNQMGLACVQRYSINEAVELFEE 625 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 625 (727)
..+..+..+|..++..|+|++|+.+|.+++.++...... . .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 446778899999999999999999999999986654211 0 234567999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHHHhCChhHH
Q 004851 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVD-DEKRRLAELLKEAGRVRSR 703 (727)
Q Consensus 626 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~-~~~~~La~~~~~~g~~~~A 703 (727)
++.+ +|....+++.+|.+|..+|++++|+..|++++.+ +|.+. .+...|+.+....++..+.
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 8999999999999999999999999999999988 67776 6677777777666554443
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=2.7e-12 Score=127.89 Aligned_cols=195 Identities=12% Similarity=0.031 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Q 004851 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (727)
+..+..+|..++..|+|++|+.+|++++... +.++ .++..+|.+|..+|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 5678899999999999999999999999885 3333 35899999999999999999999999988
Q ss_pred CCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 004851 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (727)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 424 (727)
+|....+++.+|.+|...|++++|+.+|++++.+.|........ .++..+ . ..++..+..... ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~---~~~~~~--~------~~~~~~~~~~~~---~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD---DIPSAL--R------IAKKKRWNSIEE---RR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS---HHHHHH--H------HHHHHHHHHHHH---TC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH---HHHHHH--H------HHHHHHHHHHHH---HH
Confidence 78889999999999999999999999999999999976433111 011111 1 111111111111 11
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 004851 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRI 503 (727)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 503 (727)
....+. +...++.++ .|++++|+..++++++. .|........++.++... +.+++|..+|.++.+.
T Consensus 133 ~~~~~~---i~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESE---LHSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCH---HHHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHH---HHHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 222333 233344443 68999999999999887 677677777777777766 6788888888887653
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=6.2e-12 Score=118.22 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=120.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCcc-
Q 004851 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST- 556 (727)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 556 (727)
...+......|++++|...+...... .+..+..+..+|.++...|++++|+.+|++++.+.+..+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 34455666677788777777655444 44567789999999999999999999999999987665322111
Q ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004851 557 --------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (727)
Q Consensus 557 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 628 (727)
...++.++|.+|...|++++|+.++++++.+. +....+++.+|.++...|++++|+.+|++++.
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 13688999999999999999999999999872 22467899999999999999999999999999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 004851 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI-EILEFV 668 (727)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 668 (727)
+ +|....++..++.++..+++..++. ..|.+.
T Consensus 151 ~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 L--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp H--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred H--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8888889999999999998887776 344433
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.1e-11 Score=103.98 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.+..+..+|..+...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+..|++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3578899999999999999999999999999 8888899999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....+++.+|.++...|++++|+ ..|+++++++|+
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~ 104 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKDAE 104 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHhCcc
Confidence 6888899999999999999999999 999999999954
No 150
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.31 E-value=3.3e-11 Score=126.51 Aligned_cols=131 Identities=12% Similarity=0.019 Sum_probs=120.9
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Q 004851 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (727)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (727)
.-+..+|++++|+..+++++++.....+..+ .++.++.++|.+|..+|+|++|+.++++++.+.....+..++..+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455789999999999999999887777654 778899999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004851 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (727)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (727)
++||.+|..+|++++|+.+|++|++++....|++||.+..++.+|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.30 E-value=2.8e-12 Score=137.22 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=131.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-------chhHHH
Q 004851 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-------SAFFGV 601 (727)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~ 601 (727)
.++++++|+..|+.++...+.. +..+..+|.+++..|+|++|+.+|++++.+........ ......
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~-------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ-------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 4567777877777777765544 67889999999999999999999999999754321100 112367
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
+|.++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++++ +|
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NP 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Confidence 8999999999999999999999999999 8889999999999999999999999999999976 68
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004851 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLL 712 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al 712 (727)
.+..++..|+.++...|++++|....+.+++
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988744555444
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.30 E-value=8.7e-11 Score=102.68 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG----ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
.+..+..+|..++..|+|++|+..|++++++...... ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4567788999999999999999999999998432100 001224559999999999999999999999999999554
Q ss_pred CCCCCChHhHHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHH
Q 004851 507 PVPGVPPEEIASGL----TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (727)
Q Consensus 507 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (727)
. +.-.|....+| +++|.++..+|++++|+..|++++++.+...+....+..+
T Consensus 90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3 23345567778 9999999999999999999999999999887766555443
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.29 E-value=3.8e-11 Score=105.90 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
+.....++.+|.++...|++++|+.+|++++.. +|....+++.+|.+|...|++++|+.+|++++.+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 81 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----- 81 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 445678899999999999999999999999998 8988999999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....+++.+|.+|...|++++|+ ..|+++++++|.
T Consensus 82 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 118 (142)
T 2xcb_A 82 ---DINEPRFPFHAAECHLQLGDLDGAE-SGFYSARALAAA 118 (142)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHT
T ss_pred ---CCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 5777889999999999999999999 999999999996
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.29 E-value=4.5e-11 Score=108.40 Aligned_cols=104 Identities=24% Similarity=0.275 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
...+..+..+|.++...|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|++++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 74 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV----- 74 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 345788999999999999999999999999999 8888999999999999999999999999999988
Q ss_pred CCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 677 GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 677 g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....+++.+|.+|..+|++++|+ .+|+++++++|+
T Consensus 75 ---~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~ 111 (164)
T 3sz7_A 75 ---DPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGN 111 (164)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSS
T ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence 6888999999999999999999999 999999999997
No 155
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.28 E-value=3.7e-11 Score=114.22 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
+..++.+|.++...|++++|+.+|.+++ .. ...+++.+|.+|...|++++|+.+|++++.+ .|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~ 68 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 68 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4568899999999999999999999874 11 3568999999999999999999999999998 68
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC-------CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 004851 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (727)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (727)
....++..+|.+|...|++++|+.+|++++.+..... .....+....++..+|.++...|++++|+.+|++++
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999754310 000234556889999999999999999999999999
Q ss_pred HHHHh
Q 004851 545 KIYND 549 (727)
Q Consensus 545 ~~~~~ 549 (727)
.+.+.
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 87553
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=6.3e-11 Score=102.78 Aligned_cols=122 Identities=11% Similarity=0.190 Sum_probs=109.6
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004851 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
.+.....+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 34567889999999999999999999999998751 223678999999999999999999999999998
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004851 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (727)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 7888889999999999999999999999999987 68888899999999998875
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.27 E-value=1.6e-10 Score=115.91 Aligned_cols=242 Identities=11% Similarity=-0.037 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhC
Q 004851 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLG 343 (727)
Q Consensus 265 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 343 (727)
..++..+..+....+..++|+.++.+++.+. +++. .+|+..+.++..+| .+++++.++.+++..
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-----P~~y----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~------ 118 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMN-----PAHY----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ------ 118 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-----chhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------
Confidence 3334444444555566789999999999986 4443 35899999999999 599999999999988
Q ss_pred CCCchHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHH--------HHHH
Q 004851 344 ETDPRVGETCRYLAEAHVQA-L-QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHE--------AALE 413 (727)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~--------~A~~ 413 (727)
+|....+|...+.++... + ++++++.++.+++...+++. .+|...+.+....|.++ ++++
T Consensus 119 --nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy--------~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 119 --NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY--------HTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp --TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH--------HHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 799999999999999988 7 89999999999998877663 67888888888888877 8999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 004851 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR 486 (727)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 486 (727)
++.+++. .++....+|+..+.++...++ ++++++++.+++.+ +|....+|+.+..++..
T Consensus 189 ~~~k~I~------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 189 WCNEMLR------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHH------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH------hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHh
Confidence 9998876 366677899999999999987 79999999999998 89999999999999988
Q ss_pred cCChHH------------HHH-HHHHHHHHHhcCCCCC----ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 004851 487 TGKLRE------------SKS-YCENALRIYEKPVPGV----PPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (727)
Q Consensus 487 ~g~~~~------------A~~-~~~~al~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (727)
.|+... .+. .+......+....... .......++..|+.+|...|+.++|.++|+...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 255 FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 876510 000 0112222222222111 1134566888999999999999999999988643
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=2.4e-11 Score=103.66 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
.++.+|.++...|++++|+..|++++.. +|....+++.+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678899999999999999999999999 8999999999999999999999999999999988 68
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+...++..||.+|...|++++|+ ..|+++++++|.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~ 117 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQPQ 117 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcC
Confidence 88899999999999999999999 999999999986
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.26 E-value=1.5e-10 Score=99.93 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.....+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI------ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence 345778899999999999999999999999862 223578999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChh
Q 004851 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVR 701 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~ 701 (727)
.|....++..+|.++...|++++|+.+|++++.+ .|....++..++.++...|+++
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 --DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTCC
T ss_pred --CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcCC
Confidence 7887889999999999999999999999999987 5777789999999999999863
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.25 E-value=7.3e-11 Score=107.03 Aligned_cols=104 Identities=17% Similarity=0.078 Sum_probs=94.8
Q ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
.....+..+..+|.++...|++++|+.+|++++.+. +....++..+|.+|...|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 344567889999999999999999999999999872 224679999999999999999999999999999
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
+|....+++.+|.+|..+|++++|+.+|++++.+.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 88889999999999999999999999999999984
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=2e-11 Score=112.40 Aligned_cols=125 Identities=10% Similarity=0.108 Sum_probs=109.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004851 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (727)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 647 (727)
+...|++++|+..+++++... +....++..+|.++...|++++|+.+|++++.+ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 456789999999999998862 223578999999999999999999999999998 6777889999
Q ss_pred HHHH-HHHcCCh--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 648 LAGT-YDAIGRL--DDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 648 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|.+ +...|++ ++|+.+|++++.+ +|....+++.+|.+|...|++++|+ ..|+++++++|.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 147 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCC
Confidence 9999 8899999 9999999999987 5777889999999999999999999 999999999997
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=1.6e-10 Score=101.81 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
...|.....++.+|.++...|++++|+.+|++++.. .|....+|..+|.+|...|++++|+.+|++++.+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 356788889999999999999999999999999998 7888999999999999999999999999999999
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
.|....+++.+|.+|..+|++++|+.+|++++.+.+..
T Consensus 82 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 -------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp -------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 33445678999999999999999999999999998865
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.22 E-value=2.7e-10 Score=98.20 Aligned_cols=124 Identities=23% Similarity=0.227 Sum_probs=109.9
Q ss_pred ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
..+.....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICID--- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---
Confidence 356678899999999999999999999999999885543 5688999999999999999999999999862
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 004851 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658 (727)
Q Consensus 592 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 658 (727)
+....++..+|.++...|++++|+.+|++++.+ .|....++..++.++...|++
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 -----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred -----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 223578999999999999999999999999998 788888999999999999876
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=2.1e-10 Score=99.45 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (727)
Q Consensus 261 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 340 (727)
.+....++..+|.++...|++++|+.+|++++... +.+ ..++..+|.++...|++++|+.+|+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD----AKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 36678889999999999999999999999999875 333 335899999999999999999999999998
Q ss_pred HhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC
Q 004851 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD 407 (727)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~ 407 (727)
.|....++..+|.++...|++++|+.+|++++...+... .++..++.++...|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK--------EAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT--------HHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHhcC
Confidence 678889999999999999999999999999999887653 457888888877664
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.22 E-value=1.8e-10 Score=104.17 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004851 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (727)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (727)
..+..+..+|..++..|+|++|+.+|.+++.+...... .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44677999999999999999999999999987543211 466778999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHH-HHHHHHHHHHHhccc
Q 004851 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNE 532 (727)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 532 (727)
++.+ +|....+++.+|.+|..+|++++|+..|++++.+ .|... .+...++.+....++
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 7889999999999999999999999999999999 23333 445555555544433
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.22 E-value=1.2e-10 Score=101.77 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.+..+..+|.++...|++++|+.+|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3678999999999999999999999999999 8888899999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....+++.+|.++...|++++|+ ..|+++++++|.
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHChh
Confidence 5778889999999999999999999 999999999997
No 167
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.19 E-value=6.3e-10 Score=94.95 Aligned_cols=118 Identities=23% Similarity=0.406 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
...++..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 35678899999999999999999999998762 123568899999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004851 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 6777889999999999999999999999999987 5777888999999988765
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.18 E-value=7.4e-11 Score=126.19 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=125.9
Q ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHH
Q 004851 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIAA 273 (727)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~~~~la~ 273 (727)
..++..+++.+.......|..+..+..+|..++..|+ |++|+.+|.+|+.+.+...... ..+....++.++|.
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3345556656666666778899999999999999997 9999999999999864321000 01233688999999
Q ss_pred HHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004851 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (727)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (727)
+|..+|+|++|+.+|++++.+. +.+ ..+++++|.+|..+|++++|+..|++++++ +|....++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-----p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~ 388 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-----SAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAAR 388 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-----TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-----Ccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 9999999999999999999985 333 345999999999999999999999999998 78888999
Q ss_pred HHHHHHHHHhcCHHHHHHH-HHHHH
Q 004851 354 RYLAEAHVQALQFSEAQKF-CQMAL 377 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~-~~~al 377 (727)
..++.++...+++++|... |.+++
T Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 389 LQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888743 44443
No 169
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=8.5e-11 Score=108.08 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=104.5
Q ss_pred HHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 004851 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (727)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (727)
+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+.+|++++.+.. ....++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--------ENAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--------SCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHH
Confidence 346789999999999999886544 47889999999999999999999999998742 125688899
Q ss_pred HHH-HHHhCCH--HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 607 GLA-CVQRYSI--NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 607 a~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
|.+ +...|++ ++|+.+|++++.. +|....+++.+|.+|...|++++|+.+|++++.+
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999 8899999 9999999999998 7888889999999999999999999999999976
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=3.4e-10 Score=98.87 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 004851 557 VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (727)
Q Consensus 557 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (727)
.+..+..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 35788999999999999999999999999872 224578999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004851 637 YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 637 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
+|....+++.+|.+|...|++++|+.+|++++.+...
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888899999999999999999999999999998643
No 171
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=1.9e-09 Score=105.82 Aligned_cols=259 Identities=11% Similarity=0.034 Sum_probs=169.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 004851 400 LICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (727)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (727)
.-.+..|+|..++.-..+. ....+. .....+.++|..+|++.... .+.|. ..+...
T Consensus 21 kn~fy~G~yq~~i~e~~~~------~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF------SKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS------SCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhc------CccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 3456689999888743211 122233 34555677888888876421 12332 233444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004851 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (727)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (727)
++..+. ++ |+..+++.+.. +... ...+..+|.++...|++++|+.++.+.+...+ ......
T Consensus 77 la~~~~--~~---a~~~l~~l~~~------~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKD------KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDNDE-----AEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTT------SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhc------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHH
Confidence 444432 22 66666665433 1111 23456899999999999999999999865321 123457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHHHHHhC--CHHHHHHHHHHHHHHHHHhcC
Q 004851 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM--GLACVQRY--SINEAVELFEEARSILEQECG 635 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 635 (727)
++..++.++..+|+.+.|.+.++++.+..+. .......++..+ |++.+..| ++.+|..+|+++.+.
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d----~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~------ 207 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIED----TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT------ 207 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc----ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh------
Confidence 7888999999999999999999988765110 000011233444 44466666 999999999998765
Q ss_pred CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004851 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT--ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
.|+.......+. ++..+|++++|...++.+++..-.+-.. .+|+++.++.+++.+....|+ +|. ++++++.+
T Consensus 208 --~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~-~l~~qL~~ 281 (310)
T 3mv2_B 208 --FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE-DLTNQLVK 281 (310)
T ss_dssp --SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH-HHHHHHHH
T ss_pred --CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH-HHHHHHHH
Confidence 565222222223 8999999999999999777653110000 036788999999999999998 888 99999999
Q ss_pred Hhhh
Q 004851 714 ANSR 717 (727)
Q Consensus 714 ~~p~ 717 (727)
.+|+
T Consensus 282 ~~P~ 285 (310)
T 3mv2_B 282 LDHE 285 (310)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 9997
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=2e-10 Score=118.87 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG--------ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
..+..+|..++..|++++|+.+|++++.+..... ....+....++.++|.+|..+|++++|+.+|++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 3466789999999999999999999999765421 0013446789999999999999999999999999998
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHH
Q 004851 631 EQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRK 704 (727)
Q Consensus 631 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~ 704 (727)
+|....+++.+|.+|..+|++++|+.+|++++++ .|....++..|+.++...++++++.
T Consensus 303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999987 5777889999999999999999887
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.15 E-value=1.3e-11 Score=132.59 Aligned_cols=177 Identities=16% Similarity=0.128 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 004851 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER 594 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 594 (727)
..+..+..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 345567788899999999999999999999986554 678999999999999999999999999986
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHcCChHHHHHHHH------
Q 004851 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT--YDAIGRLDDAIEILE------ 666 (727)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------ 666 (727)
.+....++.++|.+|..+|++++|+.+|++++++ +|....++..++.+ +..+|++++|+..++
T Consensus 70 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 70 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 2334678999999999999999999999999998 67777788888888 889999999999999
Q ss_pred -----HHHHHHHHhcCCCChh---HHHHHHHHHHHHHHhCChhHHHH-HHHHHHHHH
Q 004851 667 -----FVVGIREEKLGTANPD---VDDEKRRLAELLKEAGRVRSRKA-QSLETLLDA 714 (727)
Q Consensus 667 -----~al~~~~~~~g~~~p~---~~~~~~~La~~~~~~g~~~~A~~-~~l~~al~~ 714 (727)
+++.+.....++.++. .......+...+...+...+... ..+.++.++
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~ei 197 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEV 197 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 6666554444555554 23334445555555555544330 344554444
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=2.4e-09 Score=105.11 Aligned_cols=263 Identities=11% Similarity=-0.016 Sum_probs=169.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004851 359 AHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (727)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (727)
-.+..|+|..++.-.. .+.+. . .. .....+.++|..+|++.... ...+.. .+...+
T Consensus 22 n~fy~G~yq~~i~e~~---~~~~~----~-~~--~~~~~~~Rs~iAlg~~~~~~-------------~~~~~~-~a~~~l 77 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIE---KFSKV----T-DN--TLLFYKAKTLLALGQYQSQD-------------PTSKLG-KVLDLY 77 (310)
T ss_dssp HHHTTTCHHHHTHHHH---TSSCC----C-CH--HHHHHHHHHHHHTTCCCCCC-------------SSSTTH-HHHHHH
T ss_pred HHHHhhHHHHHHHHHH---hcCcc----c-hH--HHHHHHHHHHHHcCCCccCC-------------CCCHHH-HHHHHH
Confidence 4567899988887332 12111 1 11 34667778888888876421 223322 233333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004851 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
+..+ . ++ |+..+++.+.. .+....++..+|.++...|++++|+.++.+.+.. +. ......
T Consensus 78 a~~~-~-~~---a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~-~~~~le 137 (310)
T 3mv2_B 78 VQFL-D-TK---NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDN------DE-AEGTTE 137 (310)
T ss_dssp HHHH-T-TT---CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SC-STTHHH
T ss_pred HHHh-c-cc---HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CC-CcCcHH
Confidence 4333 2 22 66666665542 1222445579999999999999999999998654 11 134577
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHhCCC
Q 004851 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM--GVMYYMLG--NYSDSYDSFKNAISKLRAIGER 594 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 594 (727)
++..++.++..+|+.+.|.+.++++.+..++.. ..--.++..+ +++....| ++.+|..+|+++.+..
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~---~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------ 208 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV---SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------ 208 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc---ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------
Confidence 888999999999999999999999877654100 0000233344 44466667 9999999999975531
Q ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 595 KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY--HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 595 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
........+.+ ++..+|++++|...++.+++..-.....+ +|+.+.++.+++.+...+|+ +|.+++.++.+..
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 01111223333 89999999999999997776532210100 26778899999999999998 8889999988763
Q ss_pred HHhcCCCChhHH
Q 004851 673 EEKLGTANPDVD 684 (727)
Q Consensus 673 ~~~~g~~~p~~~ 684 (727)
|+||...
T Consensus 284 -----P~hp~i~ 290 (310)
T 3mv2_B 284 -----HEHAFIK 290 (310)
T ss_dssp -----CCCHHHH
T ss_pred -----CCChHHH
Confidence 5555443
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=9.5e-10 Score=92.76 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004851 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
+..+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 4678899999999999999999999999862 223578999999999999999999999999998
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 004851 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL 694 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~ 694 (727)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 7888889999999999999999999999999965 577777888877764
No 176
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.12 E-value=1.6e-09 Score=92.35 Aligned_cols=118 Identities=22% Similarity=0.351 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 004851 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (727)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (727)
...++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------- 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------
Confidence 46788999999999999999999999999875433 4678899999999999999999999998762
Q ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC
Q 004851 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 596 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 656 (727)
+....++..+|.++...|++++|+.+|++++.. +|....++..++.++...|
T Consensus 74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 123468889999999999999999999999998 7888889999999987765
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=1.6e-09 Score=93.35 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 004851 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHP 639 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 639 (727)
.++.+|.++...|++++|+..|++++...+ .......++..+|.++...|++++|+.+|++++.. .|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p 70 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--------YP 70 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CC
Confidence 467889999999999999999999988632 23334578999999999999999999999999998 55
Q ss_pred cH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 640 DT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 640 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+. ..+++.+|.+|..+|++++|+.+|++++..
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55 889999999999999999999999999987
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=4.8e-10 Score=95.55 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCCh
Q 004851 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (727)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (727)
.++.+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+..|++++++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~ 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C
Confidence 4678899999999999999999999998 8999999999999999999999999999999999 4
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
|....++..+|.++...|++++|+..|++++++.+..
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4456789999999999999999999999999887643
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.11 E-value=1.1e-10 Score=119.63 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--CC-------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE--RK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
..+..+|..++..|+|++|+.+|++++.+...... .. ......++.++|.+|..+|++++|+.+|++++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667899999999999999999999987322100 00 0001138999999999999999999999999999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHhCChhHHHHHHH
Q 004851 630 LEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELL-KEAGRVRSRKAQSL 708 (727)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~-~~~g~~~~A~~~~l 708 (727)
+|....+++++|.+|..+|++++|+.+|++++.+ +|....++..|+.+. ...+..+++. ..|
T Consensus 260 --------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~-~~~ 322 (338)
T 2if4_A 260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK-EMY 322 (338)
T ss_dssp --------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 8888999999999999999999999999999976 578888999999884 4556777788 999
Q ss_pred HHHHHHhhh
Q 004851 709 ETLLDANSR 717 (727)
Q Consensus 709 ~~al~~~p~ 717 (727)
.+++...|.
T Consensus 323 ~~~l~~~p~ 331 (338)
T 2if4_A 323 KGIFKGKDE 331 (338)
T ss_dssp ---------
T ss_pred HHhhCCCCC
Confidence 999999987
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.10 E-value=6.2e-10 Score=96.02 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 602 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p 681 (727)
+++.+|.++...|++++|+..|++++.. .|+++....+++.+|.++...|++++|+.+|++++... +.++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 5678899999999999999999999987 23344444799999999999999999999999999863 4444
Q ss_pred hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 682 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
....+++.+|.++...|++++|+ ..|+++++.+|+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~ 108 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQYPG 108 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCC
Confidence 44889999999999999999999 999999999987
No 181
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=1.2e-09 Score=92.04 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004851 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999998 7878889999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 680 NPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 680 ~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.|....++..+|.++...|++++|. ..|+++++.+|.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~ 104 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEAN 104 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCC
Confidence 5777889999999999999999999 999999999886
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.09 E-value=1.1e-09 Score=113.14 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (727)
..+..+|..+...|++++|+..|++++.+.... ...+....++.++|.+|..+|++++|+.++++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 457889999999999999999999999865442 146777899999999999999999999999999997
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHH
Q 004851 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (727)
Q Consensus 463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (727)
.|....+++.+|.+|..+|++++|+.+|++++++ .|....++..++.++..+++++++...
T Consensus 303 -------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 -------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999 333466788899999999888877643
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.09 E-value=1.8e-11 Score=131.45 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (727)
..+..+|.++...|++++|+.+|++++++ .+....++.++|.++..+|++++|+.+|++++++ +
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 70 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D 70 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 34566788899999999999999999987 2234689999999999999999999999999998 8
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHhCChhHHHHHHHH-------
Q 004851 639 PDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAEL--LKEAGRVRSRKAQSLE------- 709 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~--~~~~g~~~~A~~~~l~------- 709 (727)
|....+++++|.+|..+|++++|+.+|++++++ +|....++..++.+ +..+|++++|+ ..++
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~~~~~~~~ 141 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAI-AGDEHKRSVVD 141 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC-------CCSTTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHh-ccccccchhHh
Confidence 888999999999999999999999999999987 56666778888888 88999999999 9998
Q ss_pred ----HHHHHhhh
Q 004851 710 ----TLLDANSR 717 (727)
Q Consensus 710 ----~al~~~p~ 717 (727)
+++.++|.
T Consensus 142 ~~~~~al~~~~~ 153 (477)
T 1wao_1 142 SLDIESMTIEDE 153 (477)
T ss_dssp CCTTSSCCCCTT
T ss_pred hhhhhhcccccc
Confidence 66666665
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.08 E-value=1.5e-09 Score=93.44 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004851 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
+..+..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++....... ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~ 74 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-hh
Confidence 5678899999999999999999999999862 22357889999999999999999999999999854321 11
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004851 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
.+....+++.+|.+|...|++++|+.+|++++.+ .| .......++.++...+
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence 2222779999999999999999999999999986 33 2556667777666544
No 185
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=1e-07 Score=102.34 Aligned_cols=372 Identities=9% Similarity=-0.010 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHH
Q 004851 235 GDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL 314 (727)
Q Consensus 235 g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 314 (727)
|.+...|...|++++..++ . |+++.+..+|++++... + . ...|...
T Consensus 8 ~~~i~~aR~vyer~l~~~P---------~---------------~~~e~~~~iferal~~~-----p-s----~~LW~~Y 53 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRLYM---------S---------------KDYRSLESLFGRCLKKS-----Y-N----LDLWMLY 53 (493)
T ss_dssp ----CCHHHHHHHHHHHHH---------T---------------TCHHHHHHHHHHHSTTC-----C-C----HHHHHHH
T ss_pred CcchHHHHHHHHHHHHHCC---------C---------------CCHHHHHHHHHHHhccC-----C-C----HHHHHHH
Confidence 4236778888888888763 1 88999999999999864 2 1 2235544
Q ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004851 315 GDTYAMLGQ-LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----QALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 315 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
.......+. .+.....|+.++... |. ++....+|...+..+. ..++.+.+...|++++.. |.. ..
T Consensus 54 ~~f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~~ 123 (493)
T 2uy1_A 54 IEYVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----SL 123 (493)
T ss_dssp HHHHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----TH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----hH
Confidence 444444443 345566777777652 22 3445566766666543 356788999999999873 211 11
Q ss_pred HHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC---------
Q 004851 390 EEAADRRLMGLI-------------CETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR--------- 447 (727)
Q Consensus 390 ~~a~~~~~la~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------- 447 (727)
. ..|...... -.....+..|...|..+....... . ...|...... ..++
T Consensus 124 ~--~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~--s---~~~W~~y~~~--E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 124 S--ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW--S---VKNAARLIDL--EMENGMKLGGRPH 194 (493)
T ss_dssp H--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--S---HHHHHHHHHH--HHTCTTCCCHHHH
T ss_pred H--HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--c---HHHHHHHHHH--HhcCCccCcchhh
Confidence 1 111111111 112233445555555554433221 1 1233332222 2222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 004851 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (727)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (727)
.......|++++.. .|.....|...+..+...|+.++|...|++|+.. ... . ..+...+..
T Consensus 195 ~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~~y~~~- 255 (493)
T 2uy1_A 195 ESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSLYYGLV- 255 (493)
T ss_dssp HHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHHHHHhh-
Confidence 34567788888887 5677889999999999999999999999999998 331 1 122222222
Q ss_pred HhcccHHHHHHHHHHHHHHH---HhCC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHH
Q 004851 528 ESMNELEQAIKLLQKALKIY---NDAP---GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (727)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~---~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (727)
...++ . ++...... .... ........+|...+..+...++.+.|...|.+| .. ... ...
T Consensus 256 ~e~~~---~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~~----~~~ 320 (493)
T 2uy1_A 256 MDEEA---V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EGV----GPH 320 (493)
T ss_dssp TTCTH---H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SCC----CHH
T ss_pred cchhH---H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CCC----ChH
Confidence 11111 1 22222111 1000 011123356777788887888999999999998 21 111 134
Q ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 004851 602 ALNQMGLACVQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTAN 680 (727)
Q Consensus 602 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 680 (727)
+|...|.+....+ +++.|..+|+.+++. .|+....+...+......|+.+.|..+|+++.
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----------- 381 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRLE----------- 381 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 5555666666555 699999999999987 34444455667788889999999999999872
Q ss_pred hhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 681 PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 681 p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
.....+......-...|+.+.+. ..+++++..
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r-~v~~~~~~~ 413 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFR-ELVDQKMDA 413 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Confidence 12455666666777789999998 888888864
No 186
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-09 Score=95.59 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
..+..+..+|..+...|++++|+.+|++++... ........++..+|.++...|++++|+.+|++++.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------ 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------
Confidence 346788899999999999999999999998752 122224788999999999999999999999999998
Q ss_pred CCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004851 636 PYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (727)
+|....+++.+|.++..+|++++|+.+|++++.+ +|....++..++.+..
T Consensus 95 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 95 --DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG 144 (148)
T ss_dssp --TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred --CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence 7888889999999999999999999999999987 5666677777776654
No 187
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=2e-09 Score=92.71 Aligned_cols=109 Identities=12% Similarity=0.229 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
.+..+..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+.... +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 3567889999999999999999999999998 77788899999999999999999999999999885321 12
Q ss_pred CChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 679 ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+....+++.+|.++...|++++|. .+|+++++.+|+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~ 111 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAEHRT 111 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCC
Confidence 22333889999999999999999999 999999998875
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=2.3e-09 Score=117.02 Aligned_cols=177 Identities=9% Similarity=0.051 Sum_probs=156.2
Q ss_pred HcCC-hHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHhCCCCC
Q 004851 486 RTGK-LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE----------LEQAIKLLQKALKIYNDAPGQQ 554 (727)
Q Consensus 486 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 554 (727)
..|+ .++|+..+.+++.+ .|....+|+..+.++...|+ +++|+.++++++...++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~---------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---- 106 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA---------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---- 106 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred HcCCCCHHHHHHHHHHHHH---------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence 3444 46789999999999 56668899999999999998 999999999999988776
Q ss_pred ccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Q 004851 555 STVAGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY-SINEAVELFEEARSILE 631 (727)
Q Consensus 555 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 631 (727)
..+|+..+.++...+ ++++|+.++.+++++ ++....+|...+.+....| .++++++++.++++.
T Consensus 107 ---y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 107 ---YGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp ---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred ---HHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 589999999999999 779999999999997 2334678999999999999 999999999999998
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004851 632 QECGPYHPDTLGVYSNLAGTYDAI--------------GRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (727)
Q Consensus 632 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (727)
+|....+|..++.++... +.+++|++++.+|+.+ +|++..+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 899999999999999885 5679999999999987 688889999999999999
Q ss_pred CChhH
Q 004851 698 GRVRS 702 (727)
Q Consensus 698 g~~~~ 702 (727)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88766
No 189
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.1e-09 Score=95.05 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDT---LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
....+..+|..+...|++++|+.+|++++.. .|+. ..++..+|.+|...|++++|+.++++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 4678899999999999999999999999987 6665 789999999999999999999999999987
Q ss_pred cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 676 LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 676 ~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|....+++.+|.++...|++++|. ..|+++++++|+
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~ 131 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPK 131 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSS
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCC
Confidence 5667889999999999999999999 999999999986
No 190
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.02 E-value=6.2e-10 Score=92.98 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004851 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
..++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 356788999999999999999999999998 7888889999999999999999999999999976
Q ss_pred Chh--HHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHhhh
Q 004851 680 NPD--VDDEKRRLAELLKEA-GRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 680 ~p~--~~~~~~~La~~~~~~-g~~~~A~~~~l~~al~~~p~ 717 (727)
.|. ...++..+|.++... |++++|+ +++++++...|.
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~~p~ 109 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLEHHH 109 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGGCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhcccC
Confidence 466 788999999999999 9999999 999999998886
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=2.9e-09 Score=116.23 Aligned_cols=177 Identities=9% Similarity=0.017 Sum_probs=155.1
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHhcCCCCCC
Q 004851 444 SLSR-YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 444 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
..|+ .++|+..+.+++.+ +|....+|+..+.++...|+ +++++.++++++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------- 102 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------- 102 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence 3444 46789999999999 89999999999999999998 99999999999998
Q ss_pred hHhHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 004851 513 PEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLR 589 (727)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 589 (727)
+|....+|...+.++...+ ++++|++++.+++++.++. ..+|...+.++...| .++++++++.++++.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 4556789999999999999 7799999999999997766 578999999999999 899999999998874
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHc
Q 004851 590 AIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (727)
Q Consensus 590 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 655 (727)
.+....+|+..+.++... +.+++|++++.+|+.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 233457889999888875 5689999999999999 898889999999999998
Q ss_pred CChHH
Q 004851 656 GRLDD 660 (727)
Q Consensus 656 g~~~~ 660 (727)
+++++
T Consensus 240 ~~~~~ 244 (567)
T 1dce_A 240 EPHDV 244 (567)
T ss_dssp CCCSC
T ss_pred CCccc
Confidence 88665
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.97 E-value=1e-09 Score=92.97 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=79.7
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 004851 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLA 691 (727)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La 691 (727)
.+|++++|+.+|++++++ +..+|....++..+|.+|..+|++++|+.+|++++++ +|+...+++.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 368899999999999986 1224888899999999999999999999999999987 688889999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
.++...|++++|+ ..|++++..+|.
T Consensus 69 ~~~~~~g~~~~A~-~~~~~al~~~p~ 93 (117)
T 3k9i_A 69 MVLYNLGRYEQGV-ELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 9999999999999 999999999886
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.97 E-value=1.7e-09 Score=91.61 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004851 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (727)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 649 (727)
.+|++++|+.+|++++++. ...+....++..+|.++...|++++|+.+|++++++ +|+...+++.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 4689999999999999741 113456789999999999999999999999999999 888899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 004851 650 GTYDAIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 650 ~~~~~~g~~~~A~~~~~~al~~~ 672 (727)
.++..+|++++|+.+|++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=8.4e-10 Score=96.23 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=82.6
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHHHHhcCCCCh
Q 004851 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL----------DDAIEILEFVVGIREEKLGTANP 681 (727)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~g~~~p 681 (727)
+.+.+++|+..|++++++ +|....+|.++|.++...+++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999999 999999999999999999875 5999999999998 79
Q ss_pred hHHHHHHHHHHHHHHhC-----------ChhHHHHHHHHHHHHHhhh
Q 004851 682 DVDDEKRRLAELLKEAG-----------RVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 682 ~~~~~~~~La~~~~~~g-----------~~~~A~~~~l~~al~~~p~ 717 (727)
+...++++||.+|..+| ++++|+ .+|++|++++|+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~-~~~~kAl~l~P~ 123 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT-QFFQQAVDEQPD 123 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH-HHHHHHHHhCCC
Confidence 99999999999999885 899999 999999999997
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.97 E-value=1.1e-09 Score=111.98 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHHHHHcCChHHHHH
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA-----------------SVFVRLADMYNRTGKLRESKS 495 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~ 495 (727)
..+..+|..++..|+|++|+.+|++++.+ .|... .++.++|.+|..+|++++|+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445555555555555555555555554 22222 488999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHHcCCH
Q 004851 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNY 574 (727)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~ 574 (727)
+|++++.+ .+....+++++|.+|..+|++++|+.+|++++.+.+.. ..++..++.+ ....+..
T Consensus 252 ~~~~al~~---------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-------~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 252 HCNIVLTE---------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-------KAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHHHH---------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999998 34457889999999999999999999999999987765 3456667777 3455677
Q ss_pred HHHHHHHHHHHHHH
Q 004851 575 SDSYDSFKNAISKL 588 (727)
Q Consensus 575 ~~A~~~~~~al~~~ 588 (727)
+++...|.+++...
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 88888888887754
No 196
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=1.9e-09 Score=89.95 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCC
Q 004851 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (727)
..++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 72 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----- 72 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence 456778899999999999999999999987 6777788999999999999999999999999987211
Q ss_pred ChHhHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Q 004851 512 PPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYN 548 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 548 (727)
.....++..+|.++... |++++|+.++++++...+
T Consensus 73 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 73 --EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp --TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred --cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 01466788999999999 999999999998876644
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.84 E-value=6.6e-09 Score=90.55 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=77.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHhcCCCC
Q 004851 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSI----------NEAVELFEEARSILEQECGPYH 638 (727)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 638 (727)
.+.+.|++|+..+++++++ .+..+.+|+++|.++...+++ ++|+..|++|+++ +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3456789999999999987 234578999999999998875 5999999999999 9
Q ss_pred ccHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHH
Q 004851 639 PDTLGVYSNLAGTYDAIG-----------RLDDAIEILEFVVGI 671 (727)
Q Consensus 639 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 671 (727)
|+...+|+++|.+|..+| ++++|+.+|++|+++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 999999999999999885 899999999999998
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.84 E-value=3.1e-08 Score=79.06 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 004851 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG 677 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g 677 (727)
....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 45678999999999999999999999999998 7888889999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHhC
Q 004851 678 TANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 678 ~~~p~~~~~~~~La~~~~~~g 698 (727)
+|....++..+|.++...|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 5777889999999998765
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.1e-06 Score=94.35 Aligned_cols=343 Identities=10% Similarity=-0.023 Sum_probs=198.7
Q ss_pred HcC-ChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 004851 277 SLG-QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (727)
Q Consensus 277 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (727)
..| +++.|...|++++...+. |+++.+..+|++++.. .| ...+|..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------------~~~e~~~~iferal~~--------~p-s~~LW~~ 52 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------------KDYRSLESLFGRCLKK--------SY-NLDLWML 52 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------------TCHHHHHHHHHHHSTT--------CC-CHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------------CCHHHHHHHHHHHhcc--------CC-CHHHHHH
Confidence 456 488899999998876511 7899999999999986 45 4456666
Q ss_pred HHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCCCChh
Q 004851 356 LAEAHVQALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 356 la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
........++ .+.....|+.++....... ... ..|......+. ..++.+.+...|++|+.. + ...
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~--~s~---~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P-~~~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQFENYW--DSY---GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----P-MGS 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHHSTTCT--TCH---HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----C-CTT
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHcCCCc--ccH---HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----h-hhh
Confidence 6666655553 3556677888877532211 111 33444444432 346788899999999752 1 111
Q ss_pred HHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc--CC-----h
Q 004851 431 VASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT--GK-----L 490 (727)
Q Consensus 431 ~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~-----~ 490 (727)
....|......- .....+..|...|+.+...... .....|......-... +- .
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-------~s~~~W~~y~~~E~~~~~~~~~~~~~ 195 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG-------WSVKNAARLIDLEMENGMKLGGRPHE 195 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSHHHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHhcCCccCcchhhH
Confidence 122222111111 1123344455555555444221 0112343333332211 11 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 004851 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (727)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (727)
+.....|++++... |....+|...+..+...|+.++|...|++|+.. |... .++...+..
T Consensus 196 ~Rv~~~ye~al~~~---------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-------~l~~~y~~~--- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSF---------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-------FLSLYYGLV--- 255 (493)
T ss_dssp HHHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-------HHHHHHHHH---
T ss_pred HHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-------HHHHHHHhh---
Confidence 45677899998873 223677888999999999999999999999998 5431 122222221
Q ss_pred cCCHHHHHHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004851 571 LGNYSDSYDSFKNAISKLRAIG-----ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY 645 (727)
Q Consensus 571 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 645 (727)
.+.++. ++.......... ...+.....+|...+....+.++.+.|...|++| .. .+....++
T Consensus 256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--------~~~~~~v~ 322 (493)
T 2uy1_A 256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--------EGVGPHVF 322 (493)
T ss_dssp -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------SCCCHHHH
T ss_pred -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------CCCChHHH
Confidence 111111 222222110000 0011223467777888888888999999999998 32 11234466
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 004851 646 SNLAGTYDAIG-RLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETL 711 (727)
Q Consensus 646 ~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~a 711 (727)
...|.+....+ +.+.|...|+.+++.+ ++.| ..+...+......|+.+.|. ..|+++
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR-~l~er~ 380 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENAR-ALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHH-HHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 66677666666 6999999999999853 2334 34555677888899999998 777765
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.4e-09 Score=88.48 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004851 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
+.++..+|.++...|++++|+.+|++++.+ +|....++.++|.++..+|++++|+..|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999999 8888899999999999999999999999999975
Q ss_pred ChhH------HHHHHHHHHHHHHhCChhHHHHHHHH
Q 004851 680 NPDV------DDEKRRLAELLKEAGRVRSRKAQSLE 709 (727)
Q Consensus 680 ~p~~------~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (727)
+|.. ..+++.+|.++...|+++.|+ ..++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~ 102 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV-VEVD 102 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS-SSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH-hHHH
Confidence 4555 788999999999999998887 5443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.74 E-value=4.4e-08 Score=82.37 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHh
Q 004851 618 EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEA 697 (727)
Q Consensus 618 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~ 697 (727)
+|+..|++++.. +|....+++.+|.+|...|++++|+.+|++++.+ +|....+++.+|.+|...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 578889999887 7888899999999999999999999999999987 677888999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhh
Q 004851 698 GRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 698 g~~~~A~~~~l~~al~~~p~ 717 (727)
|++++|+ ..|+++++++|.
T Consensus 67 g~~~~A~-~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGAR-QAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHHhccc
Confidence 9999999 999999999986
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.73 E-value=9.4e-08 Score=80.27 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=77.5
Q ss_pred hHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 004851 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (727)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (727)
++|+..|++++... +.++ .+++.+|.+|...|++++|+.+|++++.+ +|....+++.+|.+|.
T Consensus 2 ~~a~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQG-----TDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTT-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence 46889999999875 4443 35899999999999999999999999998 7888999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCC
Q 004851 362 QALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
..|++++|+.+|++++.+.+....
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999987653
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.66 E-value=2.1e-07 Score=74.01 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004851 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
.+....+++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456678888999999999999999999999987 6777888999999999999999999999999988
Q ss_pred CCCCChHhHHHHHHHHHHHHHhcc
Q 004851 508 VPGVPPEEIASGLTDVSSIYESMN 531 (727)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g 531 (727)
.|....++..+|.++...|
T Consensus 73 -----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHHHhcC
Confidence 2334667888888877654
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.4e-08 Score=84.56 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 004851 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (727)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (727)
+..+..+|.++...|++++|+.+|++++.+. +....++.++|.++...|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 4678899999999999999999999999872 223578999999999999999999999999998
Q ss_pred CccH------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 004851 638 HPDT------LGVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 638 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
+|.. ..+++.+|.++..+|+++.|+..+++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 6766 78899999999999998888766543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.60 E-value=1.3e-07 Score=77.09 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=65.4
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+|+...+++.+|.+|...|++++|+.+|++++++ +|....+++.+|.+|...|++++|+ ..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhhc
Confidence 5777889999999999999999999999999987 6778889999999999999999999 999999999886
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.59 E-value=1e-07 Score=77.43 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh
Q 004851 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG-VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPD 682 (727)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~ 682 (727)
..+|.++...|++++|+.+|+++++. +|.... +++.+|.+|..+|++++|+.+|++++.+ +|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 45788999999999999999999998 888888 9999999999999999999999999987 466
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 683 VDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 683 ~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
...++.. +.+.++. ..|++++..+|.
T Consensus 68 ~~~~~~~--------~~~~~a~-~~~~~~~~~~p~ 93 (99)
T 2kc7_A 68 SPALQAR--------KMVMDIL-NFYNKDMYNQLE 93 (99)
T ss_dssp STHHHHH--------HHHHHHH-HHHCCTTHHHHC
T ss_pred cHHHHHH--------HHHHHHH-HHHHHHhccCcc
Confidence 5555532 5677888 889988888887
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=4.3e-07 Score=78.98 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 004851 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLAC 610 (727)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 610 (727)
+++++|+.+|+++.+.. ... +. +|.+|...+.+++|+.+|+++.+. ....++++||.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g-----~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-----EMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-----CTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-----CHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHH
Confidence 57899999999998753 221 22 899999999999999999999874 1357899999999
Q ss_pred HH----hCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 004851 611 VQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA----IGRLDDAIEILEFVVGI 671 (727)
Q Consensus 611 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 671 (727)
.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 98 89999999999999875 335689999999999 99999999999999974
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.56 E-value=4.1e-07 Score=74.06 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 004851 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (727)
Q Consensus 309 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (727)
.+++.+|.+|...|++++|+.+|++++++ +|....+++.+|.+|...|++++|+..|++++.+.+...+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 35899999999999999999999999999 7888899999999999999999999999999999887654
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.49 E-value=8.2e-07 Score=77.20 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHH
Q 004851 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (727)
Q Consensus 237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~ 316 (727)
++++|+.+|++|.+. +.+ .+. +|.+|...+.+++|+.+|+++.+.. + ..+++.||.
T Consensus 10 d~~~A~~~~~~aa~~------g~~-----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~----~~a~~~Lg~ 65 (138)
T 1klx_A 10 DLKKAIQYYVKACEL------NEM-----FGC--LSLVSNSQINKQKLFQYLSKACELN-------S----GNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHT------TCT-----THH--HHHHTCTTSCHHHHHHHHHHHHHTT-------C----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC------CCH-----hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-------C----HHHHHHHHH
Confidence 388999999999864 222 123 8999999999999999999998762 2 345899999
Q ss_pred HHHH----hCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 004851 317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDI 379 (727)
Q Consensus 317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 379 (727)
+|.. .+++++|+.+|+++.+. ....+++.||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999 89999999999999876 356889999999999 89999999999999876
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.39 E-value=1.1e-06 Score=71.13 Aligned_cols=90 Identities=9% Similarity=0.146 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChH
Q 004851 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (727)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (727)
+.+|.++...|++++|+..|++++.. .|.... ++..+|.+|...|++++|+.+|++++.+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------- 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP--------- 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Confidence 56788999999999999999999998 777788 999999999999999999999999999932
Q ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
....++.. +.+.+++..|++++...+..
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 22223321 67788888888888887755
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.35 E-value=0.00056 Score=69.56 Aligned_cols=212 Identities=13% Similarity=0.096 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhcCCCCCC
Q 004851 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVP 512 (727)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (727)
+...+|.+|...|++++-..++......+.... ....+.....+-..+.. -+..+.-+..+..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----- 92 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----- 92 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-----
Confidence 456777888888888777777766554433221 22333333444444433 244556667777777766541
Q ss_pred hHhHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 004851 513 PEEIAS--GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (727)
Q Consensus 513 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (727)
...+.. +-..+|.+|+..|+|.+|.+.+.+.++..... ++...+..++.....+|...+++.++..++.++......
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 122222 44589999999999999999999999988765 445677788888999999999999999999999988766
Q ss_pred hCCCCchhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCh
Q 004851 591 IGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRL 658 (727)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 658 (727)
+. .++...+.....-|.++. ..++|..|..+|-++..-+... ..|....++..++.|-...++.
T Consensus 172 i~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 172 IY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp SC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred CC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence 53 445566777788889999 8999999999999997665432 2344455556666666666664
No 212
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.27 E-value=0.00028 Score=71.82 Aligned_cols=212 Identities=15% Similarity=0.102 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
.+...||.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+.++++.++.. ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r 94 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KR 94 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HH
Confidence 3578899999999999999998876643332221 12233333344444433 355666777788888776542 23
Q ss_pred hHHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004851 472 AVAS--VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 472 ~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
.... .-..||.+|+..|+|.+|...+.+.+..+.+. ++......++.....+|...+++.++..+|.+|......
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 3323 44589999999999999999999999988773 345678889999999999999999999999999998876
Q ss_pred CCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCC
Q 004851 550 APGQQSTVAGIEAQMGVMYY-MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (727)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 615 (727)
.+.++...+.+...-|.++. ..++|..|..+|-++..-+...+ .+....++..++.+....++
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence 65455566777778899999 89999999999999876554332 22233445556666666555
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.27 E-value=7.8e-06 Score=78.04 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccH--HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhcCCCChhH-HHHH
Q 004851 616 INEAVELFEEARSILEQECGPYHPDT--LGVYSNLAGTYDAI-----GRLDDAIEILEFVVGIREEKLGTANPDV-DDEK 687 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~g~~~p~~-~~~~ 687 (727)
...|...+++|+++ +|.. ..+|..||.+|... |+.++|..+|++|+++ +|.. ..++
T Consensus 179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~ 242 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHH 242 (301)
T ss_dssp HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHH
T ss_pred HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHH
Confidence 57899999999999 8884 55999999999995 9999999999999998 6764 8899
Q ss_pred HHHHHHHHHh-CChhHHHHHHHHHHHHHhhh
Q 004851 688 RRLAELLKEA-GRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 688 ~~La~~~~~~-g~~~~A~~~~l~~al~~~p~ 717 (727)
+..|..+... |++++|. .+|++++..+|.
T Consensus 243 v~YA~~l~~~~gd~~~a~-~~L~kAL~a~p~ 272 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFD-EALDRALAIDPE 272 (301)
T ss_dssp HHHHHHTTTTTTCHHHHH-HHHHHHHHCCGG
T ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHcCCCC
Confidence 9999999884 9999999 999999999987
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.23 E-value=2e-05 Score=78.70 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHh
Q 004851 561 EAQMGVMYYMLGN---YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY----SINEAVELFEEARSILEQE 633 (727)
Q Consensus 561 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~ 633 (727)
++..|..+...++ +.+|+.+|++|+++ .|.++.++..++.+|.... .......-+..++......
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 3444555555544 57899999999997 3445666666666665321 1122223334444422221
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004851 634 CGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 634 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
...|....++..++..+...|++++|+..+++|+.+ +|. ..++..+|.++...|++++|+ +.|++|+.
T Consensus 271 --~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~-e~~~~Alr 338 (372)
T 3ly7_A 271 --PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFN 338 (372)
T ss_dssp --GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred --ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHh
Confidence 124667778888999898899999999999999998 344 567889999999999999999 99999999
Q ss_pred Hhhh
Q 004851 714 ANSR 717 (727)
Q Consensus 714 ~~p~ 717 (727)
++|.
T Consensus 339 L~P~ 342 (372)
T 3ly7_A 339 LRPG 342 (372)
T ss_dssp HSCS
T ss_pred cCCC
Confidence 9996
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.19 E-value=8.4e-05 Score=70.99 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHc-----CC
Q 004851 428 DAEVASVDCSIGDTYLS-----LS------RYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRT-----GK 489 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~ 489 (727)
.+..+..+++.|.++.. .| ....|...+++++++ +|. ...+|..+|.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 45556666666655533 13 357888889999998 777 567999999999995 99
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCChHh-HHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhC
Q 004851 490 LRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 550 (727)
.++|..+|++|+++. |. ...+++..|..+.. +|++++|..++++++...+..
T Consensus 220 ~ekA~~~ferAL~Ln---------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYC---------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHC---------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhC---------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999993 32 25678888999888 599999999999999987664
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=2.3e-05 Score=63.99 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 004851 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTA 679 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 679 (727)
+.-.+.+|..++..|+|..|+.+|++|++....... ..+....++..||.+|.++|+++.|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 345678999999999999999999999988654321 12456789999999999999999999999999987
Q ss_pred ChhHHHHHHHHH
Q 004851 680 NPDVDDEKRRLA 691 (727)
Q Consensus 680 ~p~~~~~~~~La 691 (727)
.|+...+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 566666666665
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.13 E-value=7.2e-05 Score=74.72 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004851 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK---G-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (727)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (727)
.+.+|+.+|++++++.|... .++..++.+|... + ........+..++.........+..+.++..++.
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a--------~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal 285 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFT--------YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 285 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHH
Confidence 46899999999999988763 3455555555321 1 1122333344444433444455667788888898
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.+...|++++|+..+++++.+ ++. ..++..+|.++...|++++|++.|.+|+.+
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 899899999999999999999 454 578889999999999999999999999999
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.13 E-value=3.2e-05 Score=63.14 Aligned_cols=81 Identities=16% Similarity=0.035 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 004851 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (727)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (727)
..++.+|..++..|+|..|+.+|++|+........ ......++..+|.+++.+|+++.|+.++++++.+ .|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence 45789999999999999999999999987654432 3567789999999999999999999999999998 67
Q ss_pred hHHHHHHHHH
Q 004851 472 AVASVFVRLA 481 (727)
Q Consensus 472 ~~~~~~~~la 481 (727)
....++.+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 7777777665
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.07 E-value=0.00017 Score=77.27 Aligned_cols=168 Identities=10% Similarity=0.019 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHH
Q 004851 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---------LRESKSYCENALRIY 504 (727)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 504 (727)
.+..+-..+.+.|++++|+.+|+++... .-.....+|..|-.++...+. +++|..+|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455567888999999999999988764 122234566767666665544 57788888876654
Q ss_pred hcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004851 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (727)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (727)
+.. | ...+|+.+...|.+.|++++|..+|++.... |..+. ..+|..+-..|.+.|+.++|..+|++.
T Consensus 100 -----G~~-P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KVV-P-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TCC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 211 2 2457889999999999999999999987653 33333 357888899999999999999999987
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
.+. +-. + ...+|..|-.+|.+.|+.++|.++|++..+.
T Consensus 167 ~~~----G~~-P--d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES----EVV-P--EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT----TCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc----CCC-C--CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 652 221 2 2468899999999999999999999997664
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.06 E-value=0.00011 Score=78.73 Aligned_cols=168 Identities=10% Similarity=-0.060 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHHHH
Q 004851 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL---------QFSEAQKFCQMALDIHK 381 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~ 381 (727)
+..+-..|.+.|++++|+.+|+++.+.. -.|+ ..+|..+-.++...+ .+++|..+|.+.....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G- 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNG------VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK- 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-
Confidence 5556688899999999999999987652 1233 355666655665443 3788888888876532
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 382 ~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
-.++ ..+|..+...|...|++++|+.+|.+... .+..|. ..+|..+-..|...|++++|..+|++..+.
T Consensus 101 ---~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 101 ---VVPN---EATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp ---CCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1112 35789999999999999999999987643 344444 357788889999999999999999987654
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 004851 462 FKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (727)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (727)
.......+|..|...|.+.|+.++|..++++..+..
T Consensus 170 -------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 170 -------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp -------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 123345788999999999999999999999988774
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.04 E-value=1.4e-05 Score=63.46 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=65.1
Q ss_pred CccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 004851 638 HPDTLGVYSNLAGTYDAIGR---LDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
+|+...++..+|.++...++ .++|..++++++.+ +|..+.+++.||.+++..|++++|+ .+|+++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAI-DTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 46667789999999987766 79999999999998 7999999999999999999999999 999999999
Q ss_pred hhh
Q 004851 715 NSR 717 (727)
Q Consensus 715 ~p~ 717 (727)
+|.
T Consensus 73 ~p~ 75 (93)
T 3bee_A 73 NDP 75 (93)
T ss_dssp CCT
T ss_pred CCC
Confidence 887
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=3.8e-05 Score=66.00 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---RLDDAIEILEFVVGIREEKLGTANP-DVDDEKRRLA 691 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La 691 (727)
...+.+.|.+.+.. .+....+.+++|+++.+.. +.++++.+++..++. +.| ...++++.||
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence 34555666666553 4566779999999999988 677999999998875 136 6789999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+.+.|+|++|. ++++.+|+++|.
T Consensus 79 v~~~kl~~Y~~A~-~y~~~lL~ieP~ 103 (152)
T 1pc2_A 79 VGNYRLKEYEKAL-KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHTSCHHHHH-HHHHHHHHHCTT
T ss_pred HHHHHccCHHHHH-HHHHHHHhcCCC
Confidence 9999999999999 999999999996
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.99 E-value=5.3e-05 Score=65.40 Aligned_cols=130 Identities=11% Similarity=0.022 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccC
Q 004851 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEG 300 (727)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 300 (727)
..+++.....++..|. |+.|+-.+..++.+.+...+..+....+.++..+|.+++..++|..|...|++++...+....
T Consensus 20 ~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3467889999999997 999999999999887554322233456788999999999999999999999999887653221
Q ss_pred cc----------------chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 004851 301 QE----------------HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (727)
Q Consensus 301 ~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (727)
.. +.....++.+.++.||..++++.+|+..++..-.. .....+...||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---------~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---------QRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---------GCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---------hcCHHHHHHHHHHh
Confidence 11 01123456889999999999999999987653222 23455566666654
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.98 E-value=0.00018 Score=62.16 Aligned_cols=127 Identities=17% Similarity=0.002 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--
Q 004851 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP-- 636 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 636 (727)
++..-...++..|.|+.|+-....++.+.....+. .+.....++..+|.+++..++|..|...|++|++..+.+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566777888999999999999999886554332 355667889999999999999999999999999987743211
Q ss_pred ---------------CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004851 637 ---------------YHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (727)
Q Consensus 637 ---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (727)
+.+...++.+.+|.||..+|++++|+..++..- ....++.....||.+|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip---------~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP---------SRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC---------GGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC---------chhcCHHHHHHHHHHhc
Confidence 123345788999999999999999999887542 22345666777777663
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.81 E-value=8.5e-05 Score=58.86 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 600 GVALNQMGLACVQRYS---INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
+.++..+|.+++..++ .++|..++++++.+ +|+...+++.+|..++..|+|++|+.+|+++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678888988876665 79999999999999 9999999999999999999999999999999864
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.74 E-value=0.0003 Score=60.46 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCCCC-c-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 004851 599 FGVALNQMGLACVQRY---SINEAVELFEEARSILEQECGPYH-P-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 673 (727)
...+.+++|+++.+.+ ++++++.+|+..++. + | ...+++++||..|.+.|+|++|+.++++++++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 3578899999999988 677999999999987 5 6 56789999999999999999999999999998
Q ss_pred HhcCCCChhHHHHHHH
Q 004851 674 EKLGTANPDVDDEKRR 689 (727)
Q Consensus 674 ~~~g~~~p~~~~~~~~ 689 (727)
.|++..+...
T Consensus 101 ------eP~n~QA~~L 110 (152)
T 1pc2_A 101 ------EPQNNQAKEL 110 (152)
T ss_dssp ------CTTCHHHHHH
T ss_pred ------CCCCHHHHHH
Confidence 5665555433
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0081 Score=62.97 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004851 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (727)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (727)
|+++.|++.+....+..+...+......+...+..++...++|+...+++.-... ..+. .+...........-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHH
Confidence 5678888777555555555666666777888888999999999887766543221 1111 1222222222222222
Q ss_pred -HcCChHHHHHHHHHHHHHHhcCCCCCC--hHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 004851 486 -RTGKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (727)
Q Consensus 486 -~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (727)
.....+. ......+........+.- ....+.....|+.+|...|++.+|...+.....-.... .+......++.
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 2232222 122233333222211111 22356777889999999999999999998876443222 22335567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
....+|...+++.+|..++.++........ ..+......+...|.++...++|.+|..+|.++......
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 889999999999999999999865444332 233456678888999999999999999999999886544
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.029 Score=58.76 Aligned_cols=220 Identities=12% Similarity=-0.016 Sum_probs=141.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 004851 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (727)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (727)
.|+++.|++.+....+..+...+. .....++..+..++...|+++...+++.... ...+..............-|
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~--~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr~qlk~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDL--ASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKHGQLKLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCST--TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccch--hhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHH
Confidence 367888887765444444333322 2224567788889999999998877664322 22222222222222222222
Q ss_pred H-HcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHH
Q 004851 443 L-SLSRYDEAGFAYQKALTAFKTNKGE---NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (727)
Q Consensus 443 ~-~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (727)
. .....+. ......+......... -....+.....|+.+|...|++.+|...+.....-... ..+......
T Consensus 104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve 178 (445)
T 4b4t_P 104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQ 178 (445)
T ss_dssp HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHH
T ss_pred HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHH
Confidence 2 1222111 1111222211111100 01235677789999999999999999999987655433 345666788
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 004851 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (727)
.+.....+|...+++.+|..++.++..........+......+...|.++...++|.+|..+|.++.......+
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence 89999999999999999999999987655555455556667788899999999999999999999988765443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.18 E-value=0.0029 Score=52.19 Aligned_cols=86 Identities=14% Similarity=0.037 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDD---AIEILEFVVGIREEKLGTANP-DVDDEKRRLA 691 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La 691 (727)
...+...|.+.+.. .+....+.+++|+++.+..+..+ ++.+++..+ ....| ...+.++.||
T Consensus 17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHH
Confidence 34555666666554 34566789999999999887665 555555544 34446 6788999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 692 ELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 692 ~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+.+.|+|++|. .+++.+|+..|.
T Consensus 82 vg~yklg~Y~~A~-~~~~~lL~~eP~ 106 (126)
T 1nzn_A 82 VGNYRLKEYEKAL-KYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred HHHHHhhhHHHHH-HHHHHHHHhCCC
Confidence 9999999999999 999999999995
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.94 E-value=0.0063 Score=51.27 Aligned_cols=104 Identities=13% Similarity=-0.017 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 559 GIEAQMGVMYYMLGNY------SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..|........+.|+. ++-++.|++|+...+.........++..|...|.. ...++.++|.+.|+.++.+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---
Confidence 4566666666767887 78888999988876544334445567777777855 5668999999999999997
Q ss_pred hcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 633 ECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 633 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
|...+.+|...|..-.++|+...|...+.+++.+
T Consensus 90 -----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 -----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp -----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5556889999999999999999999999999985
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.81 E-value=0.013 Score=49.46 Aligned_cols=108 Identities=18% Similarity=0.101 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 432 ASVDCSIGDTYLSLSRY------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
...|..........|+. ++-++.|++|+....-.........+..|...|.. ...++.++|...|+.++.+.+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence 34555555566666777 77778888888764222222345567778888866 566999999999999999822
Q ss_pred cCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Q 004851 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (727)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (727)
..+.+|...|....++|+...|.+.+.+|+.+.+.
T Consensus 92 ---------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 ---------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ---------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ---------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 23889999999999999999999999999986543
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.52 E-value=0.025 Score=46.61 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 004851 600 GVALNQMGLACVQRYSINE---AVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 675 (727)
..+.+++|+++....+... ++.+++..+.. ..| ..-++++.||..+.+.|+|++|+.+++.++++
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~---- 103 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---- 103 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----
Confidence 5788889999998876655 66666665543 235 56779999999999999999999999999988
Q ss_pred cCCCChhHHHHHH
Q 004851 676 LGTANPDVDDEKR 688 (727)
Q Consensus 676 ~g~~~p~~~~~~~ 688 (727)
.|++..+..
T Consensus 104 ----eP~n~QA~~ 112 (126)
T 1nzn_A 104 ----EPQNNQAKE 112 (126)
T ss_dssp ----CTTCHHHHH
T ss_pred ----CCCCHHHHH
Confidence 565555443
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.053 Score=56.55 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 004851 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
....++..+|..|...|++++|.++|.++......... ....+..+..++...+++..+..++.++.......++
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 45567889999999999999999999998887654432 2466888889999999999999999999888777777
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (727)
...........|.++...++|..|..+|..++..
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 6666677777888899999999999999887654
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.62 E-value=4 Score=46.08 Aligned_cols=188 Identities=12% Similarity=0.140 Sum_probs=98.8
Q ss_pred HHHHHhcCCC---CCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCC---CccHHHHHHHHHHHHHHcCC
Q 004851 500 ALRIYEKPVP---GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGN 573 (727)
Q Consensus 500 al~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~ 573 (727)
++.+..+.++ ..+.....-+++.+|.++...++ +++.++...+.-.....+. ......+...||.+|.-.++
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ 470 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence 3444444443 23344566778888888777664 5777777766543211121 11222345577877776666
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004851 574 YSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 653 (727)
+++...+...+. +........+-..||.++...|+-+-...++..+.+. ..+...-...+|..+.
T Consensus 471 -eev~e~L~~~L~------dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll 535 (963)
T 4ady_A 471 -IEVYEALKEVLY------NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALI 535 (963)
T ss_dssp -HHHHHHHHHHHH------TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh------cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhh
Confidence 345555544443 1111112245667888888888876666555555431 2233323344444455
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHhCChhHHHHHHHHHHH
Q 004851 654 AIGRLDDAIEILEFVVGIREEKLGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLL 712 (727)
Q Consensus 654 ~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al 712 (727)
..|+.+.+....+.... ..+|.... +...+|..|...|+...-. ..+..+.
T Consensus 536 ~~g~~e~~~~li~~L~~-------~~dp~vRygaa~alglAyaGTGn~~aIq-~LL~~~~ 587 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-------SDESLLRYGGAFTIALAYAGTGNNSAVK-RLLHVAV 587 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-------CSCHHHHHHHHHHHHHHTTTSCCHHHHH-HHHHHHH
T ss_pred hCCChHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHhc
Confidence 66777766665554433 22343322 2345666777777754332 3444443
No 235
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.094 Score=54.62 Aligned_cols=144 Identities=13% Similarity=0.015 Sum_probs=65.9
Q ss_pred HHHHhcCHHHHHHHHHHHH--HHHHh-cCCCCCHHHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHHHhC
Q 004851 359 AHVQALQFSEAQKFCQMAL--DIHKD-NGSPASLEEAADRRLMGLICETKGDHEAA----------LEHLVLASMTMIAN 425 (727)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al--~~~~~-~~~~~~~~~a~~~~~la~~~~~~g~~~~A----------~~~~~~al~~~~~~ 425 (727)
.++..+++++|..+....+ ..... +...-+...+.+|+..+.++...|+.... ...+..+++.....
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888888877655 12111 11112233467788888888888876653 22333333433344
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
.+....+.+++.+-+.|...+.|++|..+..++.-. .. ...+...+..++.+|.++...++|.+|..++..|+..+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 556677889999999999999999999998877311 00 011345577888999999999999999999999987643
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.045 Score=57.09 Aligned_cols=110 Identities=9% Similarity=0.135 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Q 004851 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (727)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (727)
.....++..+|..|...|++++|.+.|.++...... .......+..+..++...+++..+..++.++..+....
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 345567889999999999999999999999887643 23457788889999999999999999999998877655
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
+++..........|.++...++|..|..+|-.+...
T Consensus 202 -~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 -GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 455555566667788889999999999999887654
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.49 E-value=0.21 Score=41.24 Aligned_cols=75 Identities=5% Similarity=-0.046 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 004851 599 FGVALNQMGLACVQRYSI---NEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 674 (727)
...+.+++|+++.+..+. .+++.+++..+.. +| ..-+.++.||..+.++|+|++|..+.+.++++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--- 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence 357888899999887754 5688888877765 56 46779999999999999999999999999976
Q ss_pred hcCCCChhHHHHHHH
Q 004851 675 KLGTANPDVDDEKRR 689 (727)
Q Consensus 675 ~~g~~~p~~~~~~~~ 689 (727)
.|++..+...
T Consensus 108 -----eP~N~QA~~L 117 (134)
T 3o48_A 108 -----ERNNKQVGAL 117 (134)
T ss_dssp -----CTTCHHHHHH
T ss_pred -----CCCCHHHHHH
Confidence 5666555433
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.48 E-value=0.41 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004851 351 ETCRYLAEAHVQALQFSEAQKFCQMA 376 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~a 376 (727)
..|..+|..+...++++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45555666666666666666665554
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.27 Score=54.41 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=84.7
Q ss_pred hccc-HHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHh----CCCCc----
Q 004851 529 SMNE-LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISKLRAI----GERKS---- 596 (727)
Q Consensus 529 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~----~~~~~---- 596 (727)
..++ ++.|+.++++.....+.. .+++..+.+... ..+--+|+..+.++++..... .....
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~--------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIH--------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCch--------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3455 577888888876654432 222222222221 123456777777777543211 11110
Q ss_pred --hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004851 597 --AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFV 668 (727)
Q Consensus 597 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 668 (727)
+.....+..-+..+...|+++-|+++.++|+.. .|....+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112345666788888999999999999999999 8999999999999999999999999888766
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.40 E-value=4.3 Score=44.93 Aligned_cols=82 Identities=12% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHH
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG---------RLDDAIEILEFVV 669 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al 669 (727)
.+.=|..||.+..+.+++++|++.|+.++.. .....++..|-.+|...+ +.+..+...-+.+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~---------RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA---------RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS---------SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999964 344567888888898877 6677777766666
Q ss_pred HHHHHhcCCCChhHHHHHHH
Q 004851 670 GIREEKLGTANPDVDDEKRR 689 (727)
Q Consensus 670 ~~~~~~~g~~~p~~~~~~~~ 689 (727)
...-+-+..-.|....++..
T Consensus 683 ~w~~RwY~efs~~l~~~l~k 702 (754)
T 4gns_B 683 SYDCRYYNYCQIFNLQLLEK 702 (754)
T ss_dssp HHHHHTTBCCCHHHHHHHHH
T ss_pred HHhhhcccccCHHHHHHHHH
Confidence 55555555555655554443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.39 E-value=0.11 Score=42.98 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 642 LGVYSNLAGTYDAIGRL---DDAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 642 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+.+++|+++.+..+. .+++.+++..+.. +| ...+.++.||..+.+.|+|++|. ++.+.+|+..|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence 46889999999998765 4577777766653 35 57899999999999999999999 999999999996
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.23 E-value=0.19 Score=57.41 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004851 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336 (727)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 336 (727)
......|++++|.+..+..- ++ ..|..+|..+...|+++.|+.+|.++-.
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~----------~~----~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES----------AE----MKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC----------CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ehhhhcCCHHHHHHHHHhhC----------cH----hHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 34567789998888765421 11 2489999999999999999999998643
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.23 E-value=0.36 Score=49.43 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=86.2
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCCCCchhHHHH
Q 004851 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGERKSAFFGVA 602 (727)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~ 602 (727)
|......|+.+.|...+.+|+.++...+-.. .. ...|-.+ ...+++. ...+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~------------~~~w~~~~r~~l~~~--------------~~~a 173 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR------------DFQFVEPFATALVED--------------KVLA 173 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT------------TSTTHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC------------chhHHHHHHHHHHHH--------------HHHH
Confidence 3344456889999999999998875331100 00 0111111 1111111 2345
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004851 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 603 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
+..++..+...|++.+|+..+..++.. +|..-.++..|..+|...|+..+|+..|+++......-+|-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 666788899999999999999999988 89888899999999999999999999999999988777773
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.17 E-value=0.22 Score=41.74 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004851 640 DTLGVYSNLAGTYDAIGRLD---DAIEILEFVVGIREEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 640 ~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~g~~~p-~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
-...+.+++|+++.+..+.. +++.+++..+.. +| ...+.++.||..+.+.|+|.+|. ++.+.+|+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcC
Confidence 44568899999999987654 577777766652 33 57889999999999999999999 9999999999
Q ss_pred hh
Q 004851 716 SR 717 (727)
Q Consensus 716 p~ 717 (727)
|.
T Consensus 108 P~ 109 (144)
T 1y8m_A 108 RN 109 (144)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.84 E-value=0.22 Score=41.66 Aligned_cols=65 Identities=6% Similarity=-0.031 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 599 FGVALNQMGLACVQRYSI---NEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
...+.+++|+++....+. .+++.+++..+.. +| ..-+.++.||..+.++|+|.+|..+.+.++++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 357888899999887754 5678888877764 45 56779999999999999999999999999986
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.34 Score=50.49 Aligned_cols=171 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred HHHHcCCHHHHHHHHHHHH--HHHH---hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-cC
Q 004851 401 ICETKGDHEAALEHLVLAS--MTMI---ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY-------QKALTAFKTN-KG 467 (727)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~ 467 (727)
.+...+++++|..+-...+ ..+. ....+...+.+|+.++.++...|+........ ...+..++.. ..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456678888887765443 1221 11234556777888888888888776543221 1222222222 22
Q ss_pred CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004851 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
.+....+..+..+-+.|...+.|+.|..+..++. +... .......+..++.+|.++..+++|.+|.+++..|+...
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2345667888899999999999999999998874 2111 12355678889999999999999999999999998766
Q ss_pred HhCCCCCccHHHHHHHHHHHHHHcCCHH
Q 004851 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYS 575 (727)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~ 575 (727)
+...........++..+..+-.-+|+..
T Consensus 301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 301 PHNSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcchhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 5432222222333333333333356543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.68 E-value=3.5 Score=40.15 Aligned_cols=104 Identities=8% Similarity=-0.122 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHhcCCCCC
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGV 511 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~ 511 (727)
.+++.-+..+...|++..|.++..-.++.+.+... +........+..++.....-+ .=..+.++++....+. +.
T Consensus 54 dlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~ 128 (312)
T 2wpv_A 54 ELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SE 128 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SS
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CC
Confidence 33444455666777777777777667776666542 223334445555554433222 2345666777666543 11
Q ss_pred ChHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q 004851 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (727)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (727)
........+..+|..|...|++.+|..+|-
T Consensus 129 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 129 YKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 122335567778888888888877777664
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.60 E-value=3.6 Score=40.03 Aligned_cols=175 Identities=8% Similarity=-0.015 Sum_probs=101.1
Q ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004851 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
.+....+..++.-|.+++++++|++++... +..+.+.|++..|.++..-.++.+.+...
T Consensus 30 YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 30 YEAHQTLRTIANRYVRSKSYEHAIELISQG---------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 334455666666677777777777665544 33444555666665555555555555433
Q ss_pred CCchhHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHH-----
Q 004851 594 RKSAFFGVALNQMGLACVQRYSIN-EAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEF----- 667 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----- 667 (727)
... ......+..++.....-+ .=..+..+++....+..+. .-.....+..+|..|...|++.+|..+|-.
T Consensus 89 ~~~---~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s 164 (312)
T 2wpv_A 89 KVD---DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY-KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDS 164 (312)
T ss_dssp CCS---HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHH
T ss_pred CCC---HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCcc
Confidence 322 223334444443322111 2256777888877665432 223445889999999999999999997742
Q ss_pred ---HHHHHHHhcCC---CChhHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHH
Q 004851 668 ---VVGIREEKLGT---ANPDVDDEKRRLA-ELLKEAGRVRSRKAQSLETLLDA 714 (727)
Q Consensus 668 ---al~~~~~~~g~---~~p~~~~~~~~La-~~~~~~g~~~~A~~~~l~~al~~ 714 (727)
...+.-+-... ..|...+.+...+ ..|...|+...|. ..+....+.
T Consensus 165 ~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~-~~~~~f~~~ 217 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAH-ESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence 11111111111 4566566554444 3567889999999 888776654
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.50 E-value=0.42 Score=54.04 Aligned_cols=105 Identities=10% Similarity=-0.054 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
.....|+.+-..|++.|+.++|..+|.+.......-... ...+|+.|...|.+.|++++|.++|++..+. |
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G 195 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----TLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Confidence 344578889999999999999999998866543221111 2478999999999999999999999998764 2
Q ss_pred CCCccHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHH
Q 004851 636 PYHPDTLGVYSNLAGTYDAIGRL-DDAIEILEFVVGI 671 (727)
Q Consensus 636 ~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 671 (727)
- .|+.. +|..|-.++.+.|+. ++|..+|++....
T Consensus 196 ~-~PDvv-TYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 L-TPDLL-SYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp C-CCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred C-CCcHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 1 46654 788888899999985 7888999988764
No 250
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.43 E-value=4.1 Score=39.92 Aligned_cols=228 Identities=18% Similarity=0.139 Sum_probs=128.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 004851 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA 474 (727)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 474 (727)
+..++.=|...++|++|++++ +.-+..+...|++.-|.++..-.++.+.+..-+ ...
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL--------------------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~---~~~ 94 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDIL--------------------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR---VDG 94 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH--------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC---CCH
T ss_pred HHHHHHHHHhhcCHHHHHHHH--------------------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC---CCH
Confidence 444444455556666665544 444566667777777777777777776665422 222
Q ss_pred HHHHHHHHHHHHcCChH-HHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHH-----------
Q 004851 475 SVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK----------- 542 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------- 542 (727)
.....+..++.....-+ .=..+..+++....+. +.........+..+|..|...+++.+|..+|-.
T Consensus 95 ~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~ 172 (336)
T 3lpz_A 95 ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLAR 172 (336)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHH
Confidence 44555556555544321 2245666777665542 222223356778899999999999999877621
Q ss_pred -HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------------CchhHHHHHH
Q 004851 543 -ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----------------KSAFFGVALN 604 (727)
Q Consensus 543 -al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~ 604 (727)
..+..... + +.............|+..++...|...+....+.+...... ..+.. -+.
T Consensus 173 mL~ew~~~~-~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NFl 248 (336)
T 3lpz_A 173 MEYEWYKQD-E-SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NFI 248 (336)
T ss_dssp HHHHHHHTS-C-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--HHH
T ss_pred HHHHHHHhc-C-CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--HHH
Confidence 11111221 1 22333333444556788999999999888777665332111 01111 122
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHcC
Q 004851 605 QMGLACVQRYSINEAVELFEEARSILEQECGPYHP-DTLGVYSNLAGTYDAIG 656 (727)
Q Consensus 605 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g 656 (727)
.+-.+-++.+.. ..|....+.+...... +| .....+..+|..|+...
T Consensus 249 ~lLllt~q~~~~----~lF~~L~~~Y~~~l~r-d~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 249 SMLLLSVQKGSP----DLFRQLKSKYEANLNE-LNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHHSCCH----HHHHHHHHHTHHHHHT-TTTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCCH----HHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHcCCC
Confidence 223344455543 4555555555544443 34 67778889999998664
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.39 E-value=1.3 Score=45.17 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=80.3
Q ss_pred HHHHHHcCChhHHHHHHHHhcccchhccCccc---h----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004851 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH---A----------LAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (727)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 338 (727)
|......|+.+.|...+.+|+.+.....-++. + .....+...++..+...|++.+|+..+..++..
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~- 200 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE- 200 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 44445578999999999999998642211111 1 122344567788899999999999999999988
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 004851 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (727)
+|..-.++..+..++...|+..+|+..|+++......
T Consensus 201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999998876543
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.38 E-value=0.41 Score=54.14 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 004851 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGT 678 (727)
Q Consensus 599 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~ 678 (727)
...+|+.+-..|.+.|+.++|..+|.+..+....-. .|+.. +|..|...|.+.|++++|.++|++..+. .
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pdvv-TYNtLI~Glck~G~~~eA~~Lf~eM~~~------G 195 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLTLD-MYNAVMLGWARQGAFKELVYVLFMVKDA------G 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCCHh-HHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Confidence 456899999999999999999999988765433221 45544 8999999999999999999999988753 2
Q ss_pred CChhHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHH
Q 004851 679 ANPDVDDEKRRLAELLKEAGRV-RSRKAQSLETLLDA 714 (727)
Q Consensus 679 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~~l~~al~~ 714 (727)
-.|+ ..+|..|-..+.+.|+. ++|. +.|++..+.
T Consensus 196 ~~PD-vvTYntLI~glcK~G~~~e~A~-~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTPD-LLSYAAALQCMGRQDQDAGTIE-RCLEQMSQE 230 (1134)
T ss_dssp CCCC-HHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHc
Confidence 3454 56788888899999985 6787 888877654
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.59 E-value=6 Score=38.78 Aligned_cols=234 Identities=10% Similarity=0.026 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHh
Q 004851 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEE 515 (727)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (727)
..++.-|...++|++|++++......+-+.. ....-......+..+|...+-.-. .....+.++++...- ...+
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~--Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~--~~~p- 112 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQTLLRSG--QGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQ--PGEP- 112 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSC--TTCH-
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC--CCCc-
Confidence 3445567788888888887766554443332 011122222333355544432111 134444455544321 1111
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHH
Q 004851 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK--------NAISK 587 (727)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~ 587 (727)
.=..+..+++................+..+|..|++.+++.+|..+|- ...++
T Consensus 113 -------------------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~m 173 (336)
T 3lpz_A 113 -------------------VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARM 173 (336)
T ss_dssp -------------------HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHH
Confidence 113355666666555322233445677889999999999999988872 11122
Q ss_pred HHHh-CCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--------C------CccHHH-HHHHHHHH
Q 004851 588 LRAI-GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP--------Y------HPDTLG-VYSNLAGT 651 (727)
Q Consensus 588 ~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~------~~~~~~-~~~~la~~ 651 (727)
+-+. ....+.............|+..++...|..++....+.......+ . .|.... -+..+..+
T Consensus 174 L~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLll 253 (336)
T 3lpz_A 174 EYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLL 253 (336)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHH
Confidence 2111 111122222333333456778999999999888877765332110 0 111111 11222223
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhC
Q 004851 652 YDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAG 698 (727)
Q Consensus 652 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g 698 (727)
-+..+. ...|....+.+...+..+.|.....+..+|.+|+...
T Consensus 254 t~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 254 SVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 344554 3456555555555554443377888899999998653
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.58 E-value=3.2 Score=35.63 Aligned_cols=176 Identities=13% Similarity=-0.002 Sum_probs=104.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H--------HH
Q 004851 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK--L--------RA 590 (727)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~--------~~ 590 (727)
..++.++.-.|.+..++-++.. . ..+...+.-+.||.+..+|..|+..++..+.- - -+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 4466777788888877665532 1 11345566788999999999999999998831 0 01
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH----------HHHHcCChHH
Q 004851 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAG----------TYDAIGRLDD 660 (727)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~----------~~~~~g~~~~ 660 (727)
..-.++......+..+|.++.+.|+.++|+.+|...... .+-...+-..+-. --...|+..-
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~--------~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i 176 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK--------SFLFSPVENLLLENKVPQKRDKENVRQTGRRGI 176 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHHHHHHTTCCCCCC-----------CH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC--------ccccchHHHHHhhcCCCcccchHHHHhhhhccc
Confidence 111122234467888999999999999999999988776 3332221110000 0011122111
Q ss_pred HHHHHHHHHHHHHHh-------cCCCChhHHH-HHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 661 AIEILEFVVGIREEK-------LGTANPDVDD-EKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 661 A~~~~~~al~~~~~~-------~g~~~p~~~~-~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
-.+++.....+.+.+ ....-|.... .....+..|+..|..++.. .+|..+...||.
T Consensus 177 ~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~ 240 (242)
T 3kae_A 177 EEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred hhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCC
Confidence 223333333332211 0122233322 2234577889999999999 999999999986
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.39 E-value=1.2 Score=39.21 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=66.8
Q ss_pred HHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 004851 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (727)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (727)
.....|+++.|.+..+..-. -..|..||......|+++-|..+|.++-..
T Consensus 14 LAL~lg~l~~A~e~a~~l~~--------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------- 63 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLND--------------SITWERLIQEALAQGNASLAEMIYQTQHSF---------------- 63 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------
T ss_pred HHHhcCCHHHHHHHHHHhCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------
Confidence 34677999999998775411 124899999999999999999999886443
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004851 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a 418 (727)
..+..+|...|+.+.-....+.+ ...++ ++....+++..|+++++++.|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA----~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIA----QTRED---------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH----HHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----HHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 12333455567765444333332 22221 445556677888888888877543
No 256
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.05 E-value=1.9 Score=37.85 Aligned_cols=101 Identities=13% Similarity=0.008 Sum_probs=68.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 004851 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (727)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (727)
....|+++.|.+..+.. +....|..||......|+++-|+.+|+++-+ +..
T Consensus 15 AL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~~~ 65 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------------FDK 65 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------HHH
T ss_pred HHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------HHH
Confidence 45788999888875542 2346799999999999999999999988643 334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004851 398 MGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (727)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (727)
+..+|...|+.+.-...-+.+. ..++ +.....+++.+|+++++++.|.+.
T Consensus 66 L~~Ly~~tg~~e~L~kla~iA~----~~g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 66 LSFLYLVTGDVNKLSKMQNIAQ----TRED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH----HTTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHH----HCcc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5566777777765554443332 1111 122334667789999888887654
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.59 E-value=4 Score=48.27 Aligned_cols=182 Identities=9% Similarity=0.026 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHH----------------HhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004851 519 GLTDVSSIYESMNELEQAIKLLQKALKIY----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (727)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (727)
..+.+|.++...|++++|..+|+++-.-. .............|..+..++...+.++.++.+.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34779999999999999999998763211 01111122334567788889999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHH
Q 004851 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAI 662 (727)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 662 (727)
.|++.. ....+......|..+=..+...|+|++|...+...-. ......++..|...++..|..+.=.
T Consensus 924 lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 924 LADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence 998752 2222222344678888889999999999877754322 1222334555555455544433321
Q ss_pred HH--------HHHHHHHHH-Hh-cCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHh
Q 004851 663 EI--------LEFVVGIRE-EK-LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 715 (727)
Q Consensus 663 ~~--------~~~al~~~~-~~-~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~ 715 (727)
.+ .+..+.-.- .. .-...|.. |..|=-.+...|++..|..-.|+.+.++.
T Consensus 992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Y---y~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 992 NYSMPTLRQDVDNLLERKAFQMINVESQPCW---YNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhCCccccCCCH---HHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 11 111111110 00 00222332 33344456677888888867788877664
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.48 E-value=4.9 Score=47.53 Aligned_cols=102 Identities=11% Similarity=-0.007 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004851 394 DRRLMGLICETKGDHEAALEHLVLASMTM-----------------IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (727)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (727)
..+.+|.++...|++++|..+|.++..-+ ............|..+..++...+.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35889999999999999999998872111 1111122234567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004851 457 KALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCEN 499 (727)
Q Consensus 457 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (727)
.|++.. +.+.+. ....|..+-..+...|+|++|...+..
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 998752 222333 334678888899999999999777643
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.90 E-value=0.74 Score=48.38 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004851 600 GVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 600 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
..++..||.+......+..|..+|.+|..+ .|.....+..||.+....|+.-+|+-+|-+++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 357888999999999999999999999999 999999999999999999999999999998875
No 260
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=88.25 E-value=16 Score=33.85 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChh
Q 004851 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
-+..+|.+..+.++|++...+.+++....+... . .-.+.|..+|-. .|....+...+......-...+....
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt----~---EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~ 78 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLS----N---EERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKK 78 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCC----H---HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHH
Confidence 355678888899999999999988876533221 1 123444444422 22223333332211111000111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh---hHHHHHHHHHHHHHHcCC----------hHHHHH
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP---AVASVFVRLADMYNRTGK----------LRESKS 495 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~---~~~~~~~~la~~~~~~g~----------~~~A~~ 495 (727)
.. +..-|.. .=-.+=...+...+.+.....-+ ..+ ..+..+-..|..|...-. .+.|..
T Consensus 79 ~~-----~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~ 152 (248)
T 3uzd_A 79 IE-----MVRAYRE-KIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEK 152 (248)
T ss_dssp HH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHH-HHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 11 1111100 00112233444455544433211 112 223334445666554322 357888
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
.|+.|..+....++..++-....+++.-...|.-+++.++|..+.++|+.-.-
T Consensus 153 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 153 AYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999998876555555544554555444455568999999998888776543
No 261
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.24 E-value=20 Score=36.33 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---C--------CCChhHHHHHHHH
Q 004851 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA---N--------DQDAEVASVDCSI 438 (727)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~--------~~~~~~~~~~~~l 438 (727)
+++|+..+.-......+ .. ....+..+.....+.++|++++......... . ........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~---lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LS---VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HH---HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HH---HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45555555555544332 11 1112344556678899999998765322111 0 1123345667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 004851 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (727)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (727)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+...+-..+..+.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988887776555556677777788888899999988777777776654
No 262
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.17 E-value=12 Score=38.06 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=78.4
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHh----CC------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 004851 524 SSIYESMNELEQAIKLLQKALKIYND----AP------GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (727)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~----~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (727)
..+.....+.++|++++++....... .. ........+...++..|...|+.++|..+++++-..+....+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 44556677899999998876433221 10 111234566778899999999999999999999999888877
Q ss_pred CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 594 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
..+...+..|...+..+...+++..+...+-..+..
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 777777778888888889999998877666665543
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.04 E-value=1.6 Score=45.77 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.++..+|++......+..|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46778999999999999999999999999 8999999999999999999999999999988754
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.46 E-value=40 Score=36.45 Aligned_cols=128 Identities=12% Similarity=0.017 Sum_probs=76.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHH
Q 004851 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (727)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 643 (727)
++.......+.+.|...+...... ..............++.-....+...++...+.++... ..+...
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 287 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--------SQSTSL 287 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--------CCCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--------CCChHH
Confidence 344444555888888887765432 11122223344444555555555355666666654332 222222
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 004851 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 713 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~ 713 (727)
. ..++......|++..|..+|...-. .........+.+|.++...|+.++|. ..|+++..
T Consensus 288 ~-e~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~-~~~~~~a~ 347 (618)
T 1qsa_A 288 I-ERRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ 347 (618)
T ss_dssp H-HHHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Confidence 2 2333334466999999998865432 22345777899999999999999999 88888764
No 265
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=85.75 E-value=12 Score=36.39 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004851 432 ASVDCSIGDTYLSL--SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 432 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
..++.+||.+-... .....++.+|.+++...+..++.. ....|..+|..+++.+++.+|+..+-.|-...+..
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~---HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH---HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC---CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 34445555544332 122238899999999998888543 34677888999999999999999999998887764
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.19 E-value=7.9 Score=36.39 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
.++..|..++|+..+...++. .|..+.....|..+++-.|+++.|...++.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 356789999999999888886 8999999999999999999999999988877766
No 267
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=84.12 E-value=28 Score=32.60 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCC
Q 004851 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
.-+..+|.+..+.++|++...+.+++.... +... . .-.+.|..+|-. .|....+...+..........+.
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt----~---EERnLLSvaYKNvig~rR~swRiissieqke~~k~~ 81 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN 81 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCC----H---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence 445677888889999999999999988754 2211 1 123444444322 12223333333221111000011
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHHHcCC----------hHHHH
Q 004851 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTGK----------LRESK 494 (727)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g~----------~~~A~ 494 (727)
.. ...+..-|.. .--.+=...+...+.+.....-+ ..+ ..+..+-..|..|...-. .+.|.
T Consensus 82 -~~----~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 82 -EE----HVNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp -HH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred -HH----HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 11 1111111111 11122234455555555443211 112 222333344655543322 35788
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 004851 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (727)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (727)
..|+.|..+....++..++-....+++.-...|.-+++.++|..+.++|+.-
T Consensus 156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8999999998765545444444444444444555689999998888777654
No 268
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=83.85 E-value=8.7 Score=28.96 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Q 004851 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLE 263 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 263 (727)
.+..+-.+|..+...|+ |++||++.++|...+.........+.
T Consensus 14 ~AH~~~RrAe~ll~~gk-ydeAIech~kAa~yL~eAmkltqs~q 56 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTESEQ 56 (97)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hhhHhhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 56677889999999998 99999999999998877765554433
No 269
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=83.79 E-value=5.7 Score=30.08 Aligned_cols=49 Identities=20% Similarity=0.045 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004851 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (727)
.+..+...|...-..|+ |++|+.+|..|+..+-......+++..-..+.
T Consensus 15 ~A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr 63 (86)
T 4a5x_A 15 AAATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRCNLR 63 (86)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 34567788888888886 99999999999999887766666665444333
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.67 E-value=11 Score=33.55 Aligned_cols=87 Identities=6% Similarity=-0.032 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCH
Q 004851 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574 (727)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 574 (727)
.++++++..+...-.-.+++....+|...+..+ ..+...++..+|.-.... +.....+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 578888887766433355677788888888765 233356777777765543 33344577888999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004851 575 SDSYDSFKNAISK 587 (727)
Q Consensus 575 ~~A~~~~~~al~~ 587 (727)
.+|...|+.+++.
T Consensus 132 ~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 132 LEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.61 E-value=8.4 Score=36.23 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=75.8
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---------------
Q 004851 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGIRE--------------- 673 (727)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------- 673 (727)
..++.|.+++|+......++. +|........|..+++-.|+++.|...++.+.++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 356788999999999999988 899999999999999999999999988877655421
Q ss_pred -----Hhc-C------CCChhHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 674 -----EKL-G------TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 674 -----~~~-g------~~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
+++ | ...|........-+......|+.++|. ..-.+|++.-|.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCcc
Confidence 111 1 112333334444566667789999999 999999988775
No 272
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=83.54 E-value=29 Score=32.44 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--hcCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCC
Q 004851 475 SVFVRLADMYNRTGKLRESKSYCENALRIY--EKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAP 551 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~ 551 (727)
.-+..+|.+..+.++|++...+++++.... ... ...-.+.|..+|-. .|....+...+....+-.. ..
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL--------t~EERnLLSvaYKNvig~rR~swRiissieqke~-~k 79 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL--------TVEERNLLSVAYKNVIGARRASWRIISSIEQKEE-SR 79 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC--------CHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-cc
Confidence 445678889999999999999999988863 111 11222233333322 2333334444333222111 11
Q ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHHHHHh-----C-----CHHH
Q 004851 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKSAFFGVALNQMGLACVQR-----Y-----SINE 618 (727)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~ 618 (727)
+.... ..+..-|.. .=-.+=.......+.++.... ...+......+-..|..|.-. | -.+.
T Consensus 80 ~~~~~-----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 153 (260)
T 1o9d_A 80 GNEEH-----VNSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAES 153 (260)
T ss_dssp TCHHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CcHHH-----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 21111 111111111 111222333444444443321 111111122223334444321 1 2367
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004851 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 672 (727)
|...|+.|.++......|.||-......+.+..|.. +++.++|..+.++++.-.
T Consensus 154 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 154 TLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 899999999999888888999888888888887776 799999999888877543
No 273
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=83.31 E-value=27 Score=31.83 Aligned_cols=177 Identities=10% Similarity=0.026 Sum_probs=100.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH----HHhcCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCC
Q 004851 479 RLADMYNRTGKLRESKSYCENALR----IYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
.+|.+..+.++|++...+.+++.. .... + ...-.+.|..+|-. .|....+...+.... ....+.
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~e-L-------t~EERnLLSvAYKNvig~rR~swRiissiE---qkek~~ 79 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSE-F-------DDEERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNN 79 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC-C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCC-C-------CHHHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCC
Confidence 678889999999999999999888 4211 1 11222333333322 222233333332211 111121
Q ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHH
Q 004851 554 QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV-----QRYSINEAVELFEEARS 628 (727)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~ 628 (727)
.. ...+..-|... =-.+-.......+.+.....-+........+-..|..|. ..|+.+.|...|+.|.+
T Consensus 80 ~~-----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~ 153 (227)
T 2o8p_A 80 DE-----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT 153 (227)
T ss_dssp HH-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHH
Confidence 11 11111112111 112223344555555554432221112222333344443 45678999999999999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 004851 629 ILEQECGPYHPDTLGVYSNLAGTYD-AIGRLDDAIEILEFVVGIR 672 (727)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 672 (727)
+......|.||-......+.+.+|. -+++.++|..+.++|+.+.
T Consensus 154 iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 154 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9998788889988887777777655 5789999999999998754
No 274
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=82.95 E-value=17 Score=36.09 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCC
Q 004851 451 AGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 451 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
++.+|.+++...+..+... ...-|..+|..+++.+++.+|+..+-.+-...+...
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~---HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 352 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDE---HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 352 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTC---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhccC---CccceeecchhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 7889999999988887543 346788889999999999999999999988877653
No 275
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=82.26 E-value=29 Score=31.56 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004851 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAEVAS 433 (727)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (727)
.+|.+..+.++|++...+.+++...+......-.. .-.+.+..+|-. .|....+...+.... ........
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~---EERnLLSvAYKNvig~rR~swRiissiE---qkek~~~~--- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNNDE--- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCHH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCH---HHHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCCHH---
Confidence 67888889999999999999988731111111111 223444444422 122222222222111 11101111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHhcCC
Q 004851 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIYEKPV 508 (727)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~ 508 (727)
...+..-|... =-.+=...+...+.+.....-+........+-..|..|. ..|+.+.|...|+.|..+....+
T Consensus 82 -~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L 159 (227)
T 2o8p_A 82 -LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP 159 (227)
T ss_dssp -HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence 11111112111 112234456667777666554332222333444455554 35668899999999999988655
Q ss_pred CCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 004851 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (727)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (727)
+..++-....+++.-...|.-+++.++|..+.++|+.+.
T Consensus 160 ~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 160 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 444444445555555556667899999999999998764
No 276
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=82.02 E-value=33 Score=31.97 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 004851 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (727)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (727)
+.|...|++|.++......+.+|.......+.+..|+. +++.++|..+.++|+.-.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67889999999999888888889888877888777776 799999988877776543
No 277
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=80.63 E-value=35 Score=31.38 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChh
Q 004851 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE 430 (727)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (727)
-+..+|.+..+.++|++...+.+++....+... . .-.+.+..+|-. .|....+...+......-...+...
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt----~---EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~- 78 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELT----V---EERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGED- 78 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH-
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCC----H---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchH-
Confidence 345678888889999999999999887533221 1 123444444422 1222222222221111000001100
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHHHHcC----------ChHHHHHHH
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTG----------KLRESKSYC 497 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g----------~~~~A~~~~ 497 (727)
...+..-|. ..=-.+=...+...+.+.....-+ ..+ .....+-..|..|...- -.+.|...|
T Consensus 79 ----~~~~i~~yr-~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY 153 (234)
T 2br9_A 79 ----KLKMIREYR-QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAY 153 (234)
T ss_dssp ----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 011111111 111122233445555554443211 112 12223334455554322 235788899
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 498 ENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
+.|+.+....+++.++-....+++.-...|.-+++.++|..+.++|+.-.-
T Consensus 154 ~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 154 KAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999876554554444444444444455568999999998888776543
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.42 E-value=12 Score=33.37 Aligned_cols=87 Identities=7% Similarity=-0.025 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhC
Q 004851 243 ELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLG 322 (727)
Q Consensus 243 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 322 (727)
.++++++..+.....-..++.....|...+..+ ..+...++..+|...... ..|..... .|...|..+...|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~IG~~~Al----fYe~wA~~lE~~g 129 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GIGTKLSL----FYEEFSKLLENAQ 129 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TSSTTBHH----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CCcHHHHH----HHHHHHHHHHHcC
Confidence 678888888876655566788888887777765 234466888888876554 23444443 3888999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004851 323 QLENSLMCYTTGLEV 337 (727)
Q Consensus 323 ~~~~A~~~~~~al~~ 337 (727)
++.+|...|+.+++.
T Consensus 130 ~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 130 FFLEAKVLLELGAEN 144 (202)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999987
No 279
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=80.33 E-value=25 Score=34.99 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004851 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
.++.+|++|+...+..+...+ ...|..+|-.+++.++|.+|+..+-.+-.........
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~ 339 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYC 339 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccc
Confidence 467899999999998885443 5778889999999999999999999998887765433
No 280
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=78.56 E-value=47 Score=32.35 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 558 AGIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 558 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
..++.+||.+-...- ....++.+|.+|+...+......+. .-|..+|-.+.+.+++.+|+..+-.|-...+.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 344455555544322 2223889999999999888777654 45667888999999999999999999887654
No 281
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.66 E-value=1e+02 Score=34.99 Aligned_cols=209 Identities=13% Similarity=0.084 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCC
Q 004851 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (727)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (727)
...+...+|.++ .|+.++++..+.+.+.. ....+.....-+++.+|.++...+ .+++.++...+.-..... +
T Consensus 375 k~sA~aSLGlIh--~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~-~ 446 (963)
T 4ady_A 375 KFTATASLGVIH--KGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTS-G 446 (963)
T ss_dssp HHHHHHHHHHHT--SSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCC-S
T ss_pred HHHHHHHhhhhc--cCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccc-c
Confidence 344455566554 45666666665544321 001112234567777777776655 468887777766532100 1
Q ss_pred C--ChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 004851 511 V--PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (727)
Q Consensus 511 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (727)
. .......+...||.++...++ +++.+.+...+.- . .......+-..+|.++.-.|+-+....++..+.+
T Consensus 447 ~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d---d--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-- 518 (963)
T 4ady_A 447 DEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN---D--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-- 518 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT---C--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc---C--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc--
Confidence 1 122233456678888777766 3455555554431 1 1111123455678888888887665555554432
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 004851 589 RAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGRLDDAIEILEF 667 (727)
Q Consensus 589 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 667 (727)
..+... .-...+|..+...|+.+.+..+.+..... .+|... .+.+.+|..|...|+...-..++..
T Consensus 519 ----~~~e~v--rR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 519 ----TQHGNI--TRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp ----CSCHHH--HHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred ----cCcHHH--HHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 112121 12233344444556665555544443321 122221 1334566666677775433334444
Q ss_pred H
Q 004851 668 V 668 (727)
Q Consensus 668 a 668 (727)
+
T Consensus 586 ~ 586 (963)
T 4ady_A 586 A 586 (963)
T ss_dssp H
T ss_pred h
Confidence 3
No 282
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.64 E-value=11 Score=28.89 Aligned_cols=49 Identities=20% Similarity=0.067 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004851 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (727)
.+..+...|...-..|+ |++|+.+|..|+..+.......+++..-..+.
T Consensus 14 ~Ai~lv~~Ave~D~~g~-y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~ 62 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVLR 62 (93)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45567888888888886 99999999999999888766556555444333
No 283
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=76.63 E-value=49 Score=30.83 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 673 (727)
.+.|...|++|.++......|.||-......+.+..|.. +++.++|..+.++|+.-.-
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467889999999999888899999988888888877766 7999999999988876543
No 284
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=76.35 E-value=47 Score=30.51 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHh
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREEK 675 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 675 (727)
.+.|...|++|.++......|.||-......+.+..|.. +++.++|..+.++|+.-.-..
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~e 206 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE 206 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 467899999999999888888999888888888877766 899999999999888654443
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=76.29 E-value=6.7 Score=29.43 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q 004851 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGAN 257 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~ 257 (727)
.+..+...|...-..|+ |++|+.+|.+|++.+.....
T Consensus 18 ~Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 18 MARKYAINAVKADKEGN-AEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888986 99999999999998876543
No 286
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=75.65 E-value=7.5 Score=29.16 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 004851 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS 261 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~ 261 (727)
.+..+...|...-..|+ |++|+.+|.+|++.+.......++
T Consensus 10 ~Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~~lk~e~d 50 (83)
T 2v6y_A 10 MARKYAILAVKADKEGK-VEDAITYYKKAIEVLSQIIVLYPE 50 (83)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45567888888888996 999999999999998765443333
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=75.62 E-value=38 Score=29.13 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHH
Q 004851 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA----------FKT 464 (727)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~ 464 (727)
...++..++..|.|..++-++.. ...+.+.+.-+.||....+|..|+..++..+.- .-+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 45678888899999999887742 223445566778999999999999999988731 000
Q ss_pred hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (727)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (727)
..--+..+.-..+..+|.++...|+.++|+.++......
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111112233445667778888888888888887776655
No 288
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=75.49 E-value=53 Score=30.67 Aligned_cols=184 Identities=15% Similarity=0.177 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCC
Q 004851 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH---KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~ 426 (727)
.-+..+|.+..+.++|++...+.+++.... +... . .-.+.+..+|-. .|....+...+...... ....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt----~---EERnLLSvAyKNvIg~rR~swRiissieqk-e~~k 100 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELT----V---EERNLLSVAYKNAVGSRRSSWRIISSVEQK-EHSR 100 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCC----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCC----H---HHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhcc
Confidence 445567888888999999999999988753 2211 1 223444444432 12222222222211110 1100
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChh-HHHHHHHHHHHHHHcCC----------hHHH
Q 004851 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHPA-VASVFVRLADMYNRTGK----------LRES 493 (727)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~-~~~~~~~la~~~~~~g~----------~~~A 493 (727)
..... ..+..-|. ..=-.+=...+...+.+.....-+ ..+. .+..+-..|..|...-. .+.|
T Consensus 101 ~~~~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 101 NAEDA----SKMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp TCHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 11111 11111111 111122234445555554443211 1122 22233344555543322 3578
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q 004851 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (727)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (727)
...|+.|..+. ..++..++-....+++.-...|.-+++.++|..+.++|.+-.-
T Consensus 176 ~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 176 LKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88999999999 6554544444444444444455568999999999888877554
No 289
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=75.47 E-value=11 Score=28.41 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 004851 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (727)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 269 (727)
+.+..+...|...-..|+ |++|+.+|..|+..+-......+++..-..+.
T Consensus 11 ~~A~~l~~~Av~~D~~g~-y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~ 60 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQ-YEEAYTAYYNGLDYLMLALKYEKNPKSKDLIR 60 (85)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 355677888888888886 99999999999998876654445444433333
No 290
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=74.68 E-value=63 Score=32.16 Aligned_cols=68 Identities=7% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004851 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (727)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 648 (727)
.++.+|.+|+...+......+. .-|..+|-.+++.+++.+|+..+-.|-...+.-.- ..+..++|..+
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY--~reDeEIYKEf 364 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY--CREDEEIYKEF 364 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--CGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCC--CcchHHHHHHH
Confidence 3788999999998888777654 45677888999999999999999999887655322 33444455443
No 291
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=74.07 E-value=56 Score=30.25 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCCC
Q 004851 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQ 554 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 554 (727)
-+..+|.+..+.++|++...+.+++....... ...-.+.|..+|-. .|....+...+....+.. ...+..
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eL--------t~EERnLLSvAYKNvig~rR~swRiissieqke-~~~~~~ 76 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPL--------SNEERNLLSVAYKNVVGARRSSWRVISSIEQKT-SADGNE 76 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHh-hccCCH
Confidence 35667888899999999999998887652211 12223334444422 233334444433222221 111222
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCc--hhHHHHHHHHHHHHHHh----------CCHHHH
Q 004851 555 STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKS--AFFGVALNQMGLACVQR----------YSINEA 619 (727)
Q Consensus 555 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~--~~~~~~~~~la~~~~~~----------g~~~~A 619 (727)
..... ..-|.. .=-.+-.......+.++.... ...+ ......+-..|..|.-. .-.+.|
T Consensus 77 ~~~~~-----i~~yr~-kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a 150 (248)
T 3uzd_A 77 KKIEM-----VRAYRE-KIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESS 150 (248)
T ss_dssp C-HHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHH-HHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHH
Confidence 11111 111110 001122233344444433220 1111 11222333345444321 124678
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004851 620 VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 620 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 674 (727)
...|+.|.++......|.||-......+.+..|.. +++.++|..+.++|+.-.-.
T Consensus 151 ~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 151 EKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999988899999988888888877666 79999999998888765443
No 292
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=72.73 E-value=17 Score=27.47 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (727)
...+..+...+..+...|+|++|+++.++|...+.....
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999987665443
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.68 E-value=15 Score=31.61 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh
Q 004851 242 LELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321 (727)
Q Consensus 242 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 321 (727)
..++++++..+.....-.+++....+|...+... +.+..+|..+... ..|...+. .|...|..+...
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~---~IG~~~Al----fY~~wA~~lE~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ---GIGVSLAQ----FYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT---TSSTTBHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC---CcchhhHH----HHHHHHHHHHHc
Confidence 5577888877765544456677777777766653 4466667665543 23444443 388899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 004851 322 GQLENSLMCYTTGLEV 337 (727)
Q Consensus 322 g~~~~A~~~~~~al~~ 337 (727)
|++.+|..+|+.+++.
T Consensus 110 ~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999987
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.15 E-value=15 Score=31.25 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHH
Q 004851 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA 319 (727)
Q Consensus 240 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 319 (727)
.-..++++++..+.....-.+++.....+...+.. .+++..+|...... ..|..... .|...|..+.
T Consensus 46 ~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~---~IG~~~Al----fYe~wA~~lE 112 (152)
T 4a1g_A 46 YLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNH---GIGTLSSP----LYIAWAGHLE 112 (152)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTT---TTTTTBHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHC---CCcHHHHH----HHHHHHHHHH
Confidence 35567777877775554445566666666665543 34578888776654 23444443 3888999999
Q ss_pred HhCCHHHHHHHHHHHHHH
Q 004851 320 MLGQLENSLMCYTTGLEV 337 (727)
Q Consensus 320 ~~g~~~~A~~~~~~al~~ 337 (727)
..|++.+|...|+.+++.
T Consensus 113 ~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 113 AQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 999999999999999987
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.14 E-value=14 Score=31.88 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC
Q 004851 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (727)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (727)
..++++++..+...-.-.+++....+|...+... ++ +..+|...... +.-...+..|...|..+...|+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~-----~IG~~~AlfY~~wA~~lE~~~~ 111 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQ-----GIGVSLAQFYISWAEEYEAREN 111 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHT-----TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCC
Confidence 4567788877655433345667778887777653 33 45555544332 3344557788899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004851 574 YSDSYDSFKNAISK 587 (727)
Q Consensus 574 ~~~A~~~~~~al~~ 587 (727)
+.+|..+|+.+++.
T Consensus 112 ~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 112 FRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999874
No 296
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.64 E-value=16 Score=29.54 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHH
Q 004851 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK-PSLELVMCLHVIA 272 (727)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~-~~~~~~~~~~~la 272 (727)
.+..++..|...-..|+ |++|+.+|..|+++|-...... .++..-..+....
T Consensus 17 kAi~lv~~Ave~D~ag~-y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~ 69 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGN-YEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKC 69 (117)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45567788888888886 9999999999999987765443 3444333343333
No 297
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=70.52 E-value=9.7 Score=28.03 Aligned_cols=40 Identities=15% Similarity=-0.019 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCH
Q 004851 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSL 262 (727)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~ 262 (727)
.-...+|+.+...|+ |+.|+.+|+.+++.+.+....-.+|
T Consensus 13 ~e~~k~ARe~Al~Gn-Ydta~~yY~g~~~qI~k~l~~~~d~ 52 (78)
T 2rpa_A 13 VENVKLAREYALLGN-YDSAMVYYQGVLDQMNKYLYSVKDT 52 (78)
T ss_dssp HHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 345789999999996 9999999999999988775544443
No 298
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=68.13 E-value=79 Score=29.52 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 004851 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIREE 674 (727)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 674 (727)
.+.|...|++|.++. ....|.||-......+.+..|.. +++.++|..+.++|+.-.-.
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999 77888899888888888887776 89999999999988865433
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.50 E-value=1.4e+02 Score=32.30 Aligned_cols=21 Identities=19% Similarity=-0.001 Sum_probs=16.6
Q ss_pred HHHHHHHcCChhHHHHHHHHh
Q 004851 271 IAAIYCSLGQYNEAIPVLEQS 291 (727)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~a 291 (727)
...++.-.|+|+.|+.++-+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc
Confidence 455677789999999988765
No 300
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=67.00 E-value=47 Score=31.07 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHHH-HhcCHHHHHHH
Q 004851 306 AKFAGHMQLGDTYAMLGQ----------LENSLMCYTTGLEVQKQVL--GETDPRVGETCRYLAEAHV-QALQFSEAQKF 372 (727)
Q Consensus 306 ~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 372 (727)
..+..+-..|+.|..+-. .+.|...|+.|.++....+ .+.+|-......+.+..|+ -.++.++|..+
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444456666887765433 3678899999999988777 7778887777777777776 57899999999
Q ss_pred HHHHHHH
Q 004851 373 CQMALDI 379 (727)
Q Consensus 373 ~~~al~~ 379 (727)
.++|++-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
No 301
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=66.82 E-value=78 Score=29.03 Aligned_cols=178 Identities=13% Similarity=0.018 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCCCCH
Q 004851 311 HMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ-ALQFSEAQKFCQMALDIHKDNGSPASL 389 (727)
Q Consensus 311 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (727)
+..+|.+..+.++|++.+.+..++.+.. .....+-...|..+|-. .|....+.+.+....+.....+.....
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~~-------~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~ 83 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEKG-------EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKG 83 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHH
Confidence 5567888999999999999999887751 12222333444444421 223333333333222221111111111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCCChhHHHHHHHHHHHHHH-----cCC-----HHHHHHH
Q 004851 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMI-----ANDQDAEVASVDCSIGDTYLS-----LSR-----YDEAGFA 454 (727)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~~ 454 (727)
....-+.. .+- .+-...+...+.++. ........+..+-..|..|.. .|+ .+.|...
T Consensus 84 ~~i~~yr~--kie------~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~a 155 (236)
T 3iqu_A 84 PEVREYRE--KVE------TELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSA 155 (236)
T ss_dssp SHHHHHHH--HHH------HHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHH--HHH------HHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHH
Confidence 11111100 000 011112222222211 111222223333345655533 343 4678899
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Q 004851 455 YQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRI 503 (727)
Q Consensus 455 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 503 (727)
|+.|.++......+.||.......+.+..|+. +++.++|..+.++|+.-
T Consensus 156 Y~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 156 YQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999888888889888777777777765 69999998887777654
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.71 E-value=14 Score=31.42 Aligned_cols=84 Identities=6% Similarity=-0.015 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC
Q 004851 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (727)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (727)
=..++++++..+...-.-.+++....+|...+... .++..+|.-.... +.-...+..|...|..+...|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH-----GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT-----TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcC
Confidence 34567777777755332345666777777766543 2255555544321 333455778889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004851 573 NYSDSYDSFKNAISK 587 (727)
Q Consensus 573 ~~~~A~~~~~~al~~ 587 (727)
++.+|..+|+.+++.
T Consensus 116 ~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 116 ELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999874
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.35 E-value=18 Score=32.83 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHH
Q 004851 241 ALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320 (727)
Q Consensus 241 A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 320 (727)
-..++++++..+.....-..++....+|..++.. .+++..+|..+... ..|..... .|...|..+..
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~---~IG~~~Al----fYe~wA~~lE~ 162 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH---HIGQESSI----FYEEYANYFES 162 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT---TCSTTBHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC---CcchhHHH----HHHHHHHHHHH
Confidence 4577888888776655455667777777666653 25666777665543 23444443 38889999999
Q ss_pred hCCHHHHHHHHHHHHHH
Q 004851 321 LGQLENSLMCYTTGLEV 337 (727)
Q Consensus 321 ~g~~~~A~~~~~~al~~ 337 (727)
.|++.+|..+|+.+++.
T Consensus 163 ~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 163 RGLFQKADEVYQKGKRM 179 (223)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999999987
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.30 E-value=63 Score=29.35 Aligned_cols=84 Identities=5% Similarity=-0.010 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC
Q 004851 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (727)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (727)
=..++++++..+...-.-.+++....+|..++.. . +.+..+|.-.... +.....+..|...|..+...|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAHH-----HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHHT-----TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHHC-----CcchhHHHHHHHHHHHHHHcC
Confidence 4578888888876643334566777777777763 2 3455555544332 333455778889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004851 573 NYSDSYDSFKNAISK 587 (727)
Q Consensus 573 ~~~~A~~~~~~al~~ 587 (727)
++.+|..+|+..++.
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 305
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=64.00 E-value=89 Score=28.67 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhCCCC
Q 004851 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQ 553 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 553 (727)
.-+..+|.+..+.++|++...+.++........ ...-.+.|..+|-. .|....+...+....+.. ...+.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eL--------s~EERnLLSvaYKNvig~rR~swRiissieqke-~~~~~ 79 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL--------SCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKS-NEEGS 79 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcC--------CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH-hhcCC
Confidence 345677888999999999999999888763221 12223334444432 233344444443322222 11122
Q ss_pred Cc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHHHHH-----hCC-----HHH
Q 004851 554 QS--TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG---ERKSAFFGVALNQMGLACVQ-----RYS-----INE 618 (727)
Q Consensus 554 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~-----~g~-----~~~ 618 (727)
.. ....-|. ..+ -.+=.......+.++.... ...+......+-..|..|.- .|+ .+.
T Consensus 80 ~~~~~~i~~yr--~ki------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~ 151 (236)
T 3iqu_A 80 EEKGPEVREYR--EKV------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDS 151 (236)
T ss_dssp CCCCSHHHHHH--HHH------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred HHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHH
Confidence 11 1111111 000 0112233334444433220 01111112223334544432 232 467
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 004851 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA-IGRLDDAIEILEFVVGIRE 673 (727)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 673 (727)
|...|+.|.++......|.||-......+.+..|.. +++.++|..+.++|+.-.-
T Consensus 152 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 152 ARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999988899999988888888877664 6999999999888876543
No 306
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=61.71 E-value=1.3e+02 Score=29.96 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 004851 559 GIEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (727)
Q Consensus 559 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 632 (727)
.++.+||.+-...- ....++.+|.+|+...+......+. .-|..+|-.+.+.+++.+|+.++..+-.....
T Consensus 263 mALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 263 MALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 34444444443221 1234678999999999988777654 46777899999999999999999999887655
No 307
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=58.81 E-value=48 Score=27.51 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=39.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004851 609 ACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVG 670 (727)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 670 (727)
....+|+.++-.+.+...+.- .+-.+..+..+|.+|.+.|+..+|.+++.+|-+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n--------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKN--------NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhcc--------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 345667766655555553332 455567889999999999999999999999976
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.75 E-value=46 Score=38.24 Aligned_cols=99 Identities=9% Similarity=-0.118 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------Hh-cCCCCCHHHHHHHHHHHHHHHHcCChhH
Q 004851 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFE-------------IG-ANGKPSLELVMCLHVIAAIYCSLGQYNE 283 (727)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~-------------~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~ 283 (727)
|..+..-+.+|+++...|+ +++|..+|++|-.-+. .+ ............|..+..++...+-++-
T Consensus 837 ~~t~~~~yv~gr~~L~~ge-~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~ 915 (950)
T 4gq2_M 837 NSDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYID 915 (950)
T ss_dssp CSSHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHH
Confidence 3444455889999999998 9999999988652210 00 0011112233467778888889999999
Q ss_pred HHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHh
Q 004851 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321 (727)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 321 (727)
++.+.+.|+... ..+++......|..+=......
T Consensus 916 vi~fA~lAI~~~----~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 916 ALEFSLLADASK----ETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHTC----CSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc----ccCCccchHHHHHHHHHHHhhC
Confidence 999999999764 2333333344555554444433
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=55.02 E-value=63 Score=25.95 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=29.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHH
Q 004851 648 LAGTYDAIGRLDDAIEILEFVVGIREEKLGT--ANPDVDDEKRRLAE 692 (727)
Q Consensus 648 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~p~~~~~~~~La~ 692 (727)
.|.-....|+|++|+.+|..+++++...+.. .++.....+.....
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~ 70 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCT 70 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3344566799999999999999988776532 34443444433333
No 310
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=54.57 E-value=66 Score=24.14 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC-CCChhHHHH
Q 004851 645 YSNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDE 686 (727)
Q Consensus 645 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~ 686 (727)
+...|.-+...|++++|+.+|..+++.+...+. ..+|.....
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~ 61 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 61 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 344455567889999999999999998776653 334443333
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.06 E-value=26 Score=30.03 Aligned_cols=73 Identities=4% Similarity=-0.136 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR-RLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
+.-+..++..|+|-+|-+.++.+....+..........+.+. ...|..+...|+...|...+.+++..+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445667778899999999998887654222111223344555 5567777889999999999999987765543
No 312
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=52.79 E-value=77 Score=32.59 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhc--CCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHhCCC
Q 004851 476 VFVRLADMYNRTGKLRESKSYCENALRIYEK--PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI-YNDAPG 552 (727)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~ 552 (727)
....+-.+|++.++..-+...+...-.. .- ....-.....+..++.+|.++...++|.+|.+.+..|+.. ++...+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~ 256 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLT 256 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcccc
Confidence 3445668899999999998888544332 11 0111234467788999999999999999999999999999 775422
Q ss_pred C---CccHHHHHHHHHHHHHHcCCHH
Q 004851 553 Q---QSTVAGIEAQMGVMYYMLGNYS 575 (727)
Q Consensus 553 ~---~~~~~~~~~~la~~~~~~g~~~ 575 (727)
. ......++..+.-+-.-+|++.
T Consensus 257 ~~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 257 NQAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred chhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 1 1122234444444455567653
No 313
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=51.12 E-value=20 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Q 004851 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (727)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (727)
.-...+|+=|...|+|+.|+.+|+.+++...+.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999886554
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.66 E-value=81 Score=24.03 Aligned_cols=42 Identities=17% Similarity=0.017 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC-CCChhHHHHH
Q 004851 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEK 687 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~ 687 (727)
...|.-....|++++|+.+|..+++.+...+. ..++.....+
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l 61 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVL 61 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444557789999999999999998876553 3344443333
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.52 E-value=51 Score=37.91 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004851 394 DRRLMGLICETKGDHEAALEHLVLASMT-----------------MIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (727)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (727)
.-+.+|.+|...|++++|..+|++|-.- .............|.++..++...+-++-++...+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3578999999999999999999877311 11111122334466777888888888888888888
Q ss_pred HHHHH
Q 004851 457 KALTA 461 (727)
Q Consensus 457 ~al~~ 461 (727)
.|+..
T Consensus 922 lAI~~ 926 (950)
T 4gq2_M 922 LADAS 926 (950)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88765
No 316
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.34 E-value=66 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=23.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
..|.-....|++++|+.+|..+++.+...+
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344455788999999999999999876543
No 317
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.20 E-value=82 Score=23.42 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC-CCChhHHHHHH
Q 004851 646 SNLAGTYDAIGRLDDAIEILEFVVGIREEKLG-TANPDVDDEKR 688 (727)
Q Consensus 646 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~~p~~~~~~~ 688 (727)
...|.-....|++++|+.+|..+++.+...+. ..+|.....+.
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~ 60 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIR 60 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444456789999999999999998766542 33444434333
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.87 E-value=47 Score=28.43 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004851 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL-NQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
+..+..++..|+|=+|-+.++.+...............+.+. ...|....+.|+..-|..++.+++..+...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 345677788899999998888776532110001112233344 445566778899999999999999987654
No 319
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.52 E-value=75 Score=23.59 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 004851 647 NLAGTYDAIGRLDDAIEILEFVVGIREEKL 676 (727)
Q Consensus 647 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 676 (727)
..|.-....|++++|+.+|..+++.+...+
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 334445788999999999999999876643
No 320
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=45.19 E-value=60 Score=33.40 Aligned_cols=70 Identities=9% Similarity=-0.079 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh
Q 004851 354 RYLAEAHVQALQFSEAQKFCQMALDIHKD---NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT-MIA 424 (727)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 424 (727)
..+-.+|++.++...+..++... +.... ....+....+..++.+|.++...++|.+|.+++..|+.. ...
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 44567899999999888887544 32211 111234466778899999999999999999999999876 543
No 321
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=44.72 E-value=20 Score=25.92 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+|+.+...|++++|. .+|-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~-~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGV-DHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHHcCC
Confidence 46899999999999999 999999998886
No 322
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.76 E-value=1e+02 Score=22.97 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHHH
Q 004851 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEK-RRLAELLKE 696 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~-~~La~~~~~ 696 (727)
....-|.-+.+.++|.+|..+|+++..+ .++|....++ +.++.+-.+
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHHH
Confidence 4455566688999999999999999976 5678777666 666666543
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.21 E-value=56 Score=25.01 Aligned_cols=67 Identities=12% Similarity=-0.047 Sum_probs=44.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 004851 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (727)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (727)
.|..++..|+|-+|-+.++......+.. ......+.+....|..+...|+. |...+.+++..+...+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~--~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGE--ERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 4566777899999988888887655221 12233344455556666778887 8888888887665544
No 324
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=39.63 E-value=85 Score=23.98 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 004851 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (727)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (727)
..|..++..|+|=+|-+.++..-...+. +......+.+....|......|+. |..++.+++..+...
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~--~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG--EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 3466777889999999999887764311 111122334444455666678888 999999999987654
No 325
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=39.49 E-value=35 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q 004851 688 RRLAELLKEAGRVRSRKAQSLETLLDANSR 717 (727)
Q Consensus 688 ~~La~~~~~~g~~~~A~~~~l~~al~~~p~ 717 (727)
..+|+.+...|+++.|+ .+|-+|+..+|+
T Consensus 24 V~lGE~L~~~g~~e~av-~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGV-DHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHH-HHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHHcCC
Confidence 46899999999999999 999999999887
No 326
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=39.40 E-value=2.6e+02 Score=26.66 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=96.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHcCChh-----HHHHHHHHhcccchhccCc
Q 004851 230 ELISSGDNPQKALELALRAAKSFEIGANGKP---SLELVMCLHVIAAIYCSLGQYN-----EAIPVLEQSIEIPVIEEGQ 301 (727)
Q Consensus 230 ~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~-----~A~~~~~~al~~~~~~~~~ 301 (727)
.++...+ ++.-.+.+..+-+.+-.-+...- -|..+.+...++.-+......+ .....|+-+.+........
T Consensus 14 Hli~~~d-~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~~~~~kif~fv~~~i~~L~~~ 92 (298)
T 2r17_C 14 HLLRSED-PDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKA 92 (298)
T ss_dssp HHHTTSC-HHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCC-HHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444433 66656655555555432211110 0444455555565555444332 1122232222111111112
Q ss_pred cchHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcCHH--HHHHHHHHH
Q 004851 302 EHALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFS--EAQKFCQMA 376 (727)
Q Consensus 302 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a 376 (727)
..+...+..+..-|.+.-..|- -+-|-++|.+|+.++++...+. .....+...+...+.....+. .-..+..++
T Consensus 93 ~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdS-k~Q~~al~~ii~tL~~~~~f~~enye~L~tk~ 171 (298)
T 2r17_C 93 ELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDS-KAQLAAITLIIGTFERMKCFSEENHEPLRTQC 171 (298)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHccCCCHhhHHHHHHHH
Confidence 2234445566666776666666 6778889999999988754332 233445555555555554432 112222222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCC
Q 004851 377 LDIHKDNGSPASLEEAADRRLMGLICET----------KGDHEAALEHLVLASMTMIANDQ 427 (727)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~ 427 (727)
-....+.. ..+....+...-+.+++. ..+-+..+++++++++++...-+
T Consensus 172 t~~askLL--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d 230 (298)
T 2r17_C 172 ALAASKLL--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD 230 (298)
T ss_dssp HHHHHTCS--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC
Confidence 22222222 224445556666666664 14677888888888877665533
No 327
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=38.65 E-value=1.7e+02 Score=24.39 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 004851 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDE 686 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~ 686 (727)
.++..|.+|...|+.+.|.-+|-+.+.+...+ +.||+....
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~~ 84 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQQ 84 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhhh
Confidence 44667899999999999999999999998655 668887543
No 328
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=37.86 E-value=2.6e+02 Score=26.14 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHhcCC--CCCChHhHH
Q 004851 452 GFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPV--PGVPPEEIA 517 (727)
Q Consensus 452 ~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 517 (727)
...+..++.+.....-+. .+..+..+-..|..|...-. .+.|...|+.|.++....+ +..++-...
T Consensus 118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLG 197 (268)
T 3efz_A 118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLA 197 (268)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 445566666665544221 12222333444666654322 3578889999999886544 444444444
Q ss_pred HHHHHHHHH-HHhcccHHHHHHHHHHHHHH
Q 004851 518 SGLTDVSSI-YESMNELEQAIKLLQKALKI 546 (727)
Q Consensus 518 ~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 546 (727)
.++ +.+.. |.-+++.++|..+.++|.+-
T Consensus 198 LaL-NfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 198 TIL-NYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHH-HHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444 44444 44689999999999998876
No 329
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=37.81 E-value=2.4e+02 Score=28.78 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 004851 560 IEAQMGVMYYMLGNYSDSYDSFKN 583 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~ 583 (727)
.+..|+..+...++|.+|--++..
T Consensus 37 ~l~~L~~~h~~~~ny~EAa~~l~l 60 (436)
T 2yin_A 37 YLYKLRDLHLDCDNYTEAAYTLLL 60 (436)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345667777778888887776643
No 330
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=36.10 E-value=1.3e+02 Score=22.38 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHH
Q 004851 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC-RYLAEAH 360 (727)
Q Consensus 307 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 360 (727)
.+..+..-|.-++..++|.+|..+|+++... .++|..-.++ +.++.|-
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 3455677788899999999999999999877 2245555555 5666554
No 331
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=32.59 E-value=1.1e+02 Score=27.32 Aligned_cols=62 Identities=13% Similarity=-0.015 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCChhHHHHHHHHhcccchhccCccchHHHHHHHHHHHHHHHHhCCHH
Q 004851 260 PSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLE 325 (727)
Q Consensus 260 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 325 (727)
|..+.+..++.+|.+++..++|.+|.+.|..|+...... .......++..|.-+-..+|++.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~----~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS----SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh----HHHHHHHHHHHHHHHHHHcCCCC
Confidence 446678889999999999999999999999999875321 11122223444444445556643
No 332
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=31.80 E-value=2e+02 Score=29.40 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhcC
Q 004851 325 ENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ 365 (727)
Q Consensus 325 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 365 (727)
++|+.+|++|+....++-..+++.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 56788888888888777767777777777776665544443
No 333
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=31.37 E-value=3.1e+02 Score=27.84 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH------hcCCC-------Ccc----------------------HH
Q 004851 598 FFGVALNQMGLACVQRYSINEAVELFEEARSILEQ------ECGPY-------HPD----------------------TL 642 (727)
Q Consensus 598 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-------~~~----------------------~~ 642 (727)
.....+..|+..+...|++.+|.-++..+..+..+ ....+ .|. ..
T Consensus 9 l~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~ 88 (428)
T 2wm9_A 9 LRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLM 88 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHH
Confidence 34567788999999999999999988754433222 11000 010 01
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 004851 643 GVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLK 695 (727)
Q Consensus 643 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~ 695 (727)
..+...+..+.+-+.|+.|+.+++..+..++.. .+-.....++..++.+|.
T Consensus 89 ~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~--~dy~~Ls~~~~~~a~~y~ 139 (428)
T 2wm9_A 89 ELLEQCADGLWKAERYELIADIYKLIIPIYEKR--RDFERLAHLYDTLHRAYS 139 (428)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHH
Confidence 134445556666778888888888888877654 222333444444444443
No 334
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=30.33 E-value=97 Score=27.73 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH
Q 004851 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491 (727)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 491 (727)
..+..++.+|.++...++|.+|...+..|+..+.+.. ......++..|.-+-..+|++.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~---~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS---QKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHcCCCC
Confidence 4456677888888888888888888888887642211 1223334444444444556654
No 335
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.10 E-value=1.3e+02 Score=23.07 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhc
Q 004851 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506 (727)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (727)
-..+|..+...|+++.|+.+|-+|+.++.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 346788899999999999999999998754
No 336
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=28.96 E-value=5.6e+02 Score=27.41 Aligned_cols=194 Identities=11% Similarity=-0.060 Sum_probs=114.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCCCCCccHHH
Q 004851 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (727)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (727)
++.......+.+.|...+....... .-+..........++.-+...+...++...+.+... .. .. ...
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~-~~-~~~-- 287 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ-----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RS-QS-TSL-- 287 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TC-CC-HHH--
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc-----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cC-CC-hHH--
Confidence 3444444557888888887765432 112344444555566555556635566666665432 11 11 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------HHH
Q 004851 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI-------LEQ 632 (727)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~ 632 (727)
.. .++...+..|++..|..+|...-. .........+.+|.++...|+.++|..+|+++..- ...
T Consensus 288 ~e-~~~r~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~ 358 (618)
T 1qsa_A 288 IE-RRVRMALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (618)
T ss_dssp HH-HHHHHHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred HH-HHHHHHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 21 223334567999999998865432 11223567888999999999999999999987641 112
Q ss_pred hcCCC--------Cc---cH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCC
Q 004851 633 ECGPY--------HP---DT--LGVYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDVDDEKRRLAELLKEAGR 699 (727)
Q Consensus 633 ~~~~~--------~~---~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~~~~~~~La~~~~~~g~ 699 (727)
..|.. .+ .. .......+..+...|....|...+...+.. ..+ .....++.+....|.
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-------~~~---~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-------KSK---TEQAQLARYAFNNQW 428 (618)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CCH---HHHHHHHHHHHHTTC
T ss_pred HcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-------CCH---HHHHHHHHHHHHCCC
Confidence 22210 00 00 112345567788899999998888776531 122 233466777788888
Q ss_pred hhHHH
Q 004851 700 VRSRK 704 (727)
Q Consensus 700 ~~~A~ 704 (727)
+..++
T Consensus 429 ~~~~v 433 (618)
T 1qsa_A 429 WDLSV 433 (618)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88776
No 337
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=28.64 E-value=3.9e+02 Score=25.45 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHhc
Q 004851 432 ASVDCSIGDTYLSLSR---YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR--ESKSYCENALRIYEK 506 (727)
Q Consensus 432 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 506 (727)
...+..-|.+.-..|- -+-|.++|.+|+.++++...+ ......+...+...+.....+. .-..+..++.....+
T Consensus 99 lrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Isd-Sk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~ask 177 (298)
T 2r17_C 99 LRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISD-SKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK 177 (298)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHh
Confidence 3344444444444554 567888999999999886532 3444566666666666665543 222223333333344
Q ss_pred CCCCCChHhHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHHHHhCCCCCccHHHH---HHHHHHHHHHcCC
Q 004851 507 PVPGVPPEEIASGLTDVSSIYES----------MNELEQAIKLLQKALKIYNDAPGQQSTVAGI---EAQMGVMYYMLGN 573 (727)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~la~~~~~~g~ 573 (727)
.+ ..++-..+....+.++.. ..+-+..++++++++++...... ....... ..+.-..|+..|+
T Consensus 178 LL---KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d-~~~~v~LfveILn~ylyff~~g~ 253 (298)
T 2r17_C 178 LL---KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-PSLQVQLFIEILNRYIYFYEKEN 253 (298)
T ss_dssp CS---SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cc---CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHhhhhCCC
Confidence 33 246667777777887764 24778999999999999887632 2111111 1233445566676
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004851 574 YSDSYDSFKNAISKLRA 590 (727)
Q Consensus 574 ~~~A~~~~~~al~~~~~ 590 (727)
..-..+++...+++.+.
T Consensus 254 ~~Vt~~~in~LI~lI~~ 270 (298)
T 2r17_C 254 DAVTIQVLNQLIQKIRE 270 (298)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHH
Confidence 55556666666666654
No 338
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=28.49 E-value=1e+02 Score=22.25 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 604 NQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 604 ~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
..+|..+...|++++|..+|-+|+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45788899999999999999999887
No 339
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=28.30 E-value=2.7e+02 Score=28.21 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 004851 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (727)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (727)
..+..|+..+...|+|.+|--++..+..+
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678899999999999998888755543
No 340
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.02 E-value=2.1e+02 Score=23.83 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 004851 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDI 379 (727)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 379 (727)
.+-.+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4556788999999999999999999999988764
No 341
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.47 E-value=83 Score=32.43 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=30.4
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
++....++..+|++|..+|+|++|+.+.++++..
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 5667778999999999999999999999999865
No 342
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.90 E-value=80 Score=32.56 Aligned_cols=34 Identities=9% Similarity=-0.124 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 630 (727)
.....++..+|++|+..|++++|+.+.++++...
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 3456788889999999999999999999998753
No 343
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.48 E-value=1.9e+02 Score=29.56 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC
Q 004851 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (727)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 657 (727)
++|+++|++|+..+++....+++.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 67888888888888888877788888888888877665554
No 344
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=25.48 E-value=89 Score=32.30 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 004851 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (727)
Q Consensus 597 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 629 (727)
.....++..+|++|+..|++++|..+.++++..
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 445678888999999999999999999999875
No 345
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=25.33 E-value=92 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=30.4
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 004851 638 HPDTLGVYSNLAGTYDAIGRLDDAIEILEFVVGI 671 (727)
Q Consensus 638 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 671 (727)
.+....++..+|++|..+|+|++|+.+.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5667778999999999999999999999999874
No 346
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=23.20 E-value=5.6e+02 Score=25.44 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCCC-----Cc------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 004851 535 QAIKLLQKALKIYNDAPGQ-----QS------------TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (727)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~-----~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (727)
++..+|+.|.......... .. ..+.+++..|..+...+++-+|+.+++.|.+.+...
T Consensus 217 ~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 3456788888877755311 10 112334455666667778888888888887766554
No 347
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.28 E-value=1.1e+02 Score=25.57 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH
Q 004851 644 VYSNLAGTYDAIGRLDDAIEILEFVVGIREEKLGTANPDV 683 (727)
Q Consensus 644 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~p~~ 683 (727)
.++..|.+|...|+.+.|.-+|-++..+.-..+ +.||+.
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy 80 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccc
Confidence 456778999999999999999999998886444 335554
No 348
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=22.26 E-value=5.8e+02 Score=25.21 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHH
Q 004851 306 AKFAGHMQLGDTYAMLG------------QLENSLMCYTTGLEVQK 339 (727)
Q Consensus 306 ~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~~ 339 (727)
..+.+++++|.+|...+ ....|..+|++|--++.
T Consensus 112 E~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 112 ELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34556778887776543 25677788888765543
No 349
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=22.10 E-value=3.4e+02 Score=27.12 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 004851 238 PQKALELALRAAKSFEIGA 256 (727)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~ 256 (727)
...|..+|++|-.++..+.
T Consensus 145 lk~A~~~fq~AAG~f~~l~ 163 (392)
T 1zb1_A 145 YKNSIANLTKAFSCFEYLS 163 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999887653
No 350
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.99 E-value=6e+02 Score=25.35 Aligned_cols=170 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHhcccHHHHH--------HHH-HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHHHH
Q 004851 525 SIYESMNELEQAI--------KLL-QKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD-----SFKNAISKLRA 590 (727)
Q Consensus 525 ~~~~~~g~~~~A~--------~~~-~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~ 590 (727)
.+.+..+++.+|+ +++ ++....+-........+..+++.+.. +++...+. .+++++.++-.
T Consensus 164 ~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~-----~n~~d~V~~~~l~~WkE~La~i~t 238 (399)
T 2pm7_A 164 KNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISK-----REVDDLVENLDVSQWKFISKAIQN 238 (399)
T ss_dssp HHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHT-----TCCHHHHHHBCGGGHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHc-----cCHHHHHhcCChhhHHHHHHHHHh
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH-HHHHHHHc--------CChHHH
Q 004851 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN-LAGTYDAI--------GRLDDA 661 (727)
Q Consensus 591 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-la~~~~~~--------g~~~~A 661 (727)
........+......||.-+...|+...|.-+|--+-.+ .....+|.. +-..-... .-...+
T Consensus 239 ~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~---------dk~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~ 309 (399)
T 2pm7_A 239 LYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSL---------DKVASIWLSEFPDLEDKLKKDNKTIYEAHSEC 309 (399)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCH---------HHHHHHHHHSHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCH---------HHHHHHHHHhcchhhhccccccCCcccccHHH
Q ss_pred HHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHHHHhCChhHHHHHHHH
Q 004851 662 IEILEFVVGIREEKLGT----ANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 709 (727)
Q Consensus 662 ~~~~~~al~~~~~~~g~----~~p~~~~~~~~La~~~~~~g~~~~A~~~~l~ 709 (727)
+.-+-+-+.+++...+. ..+.....+...|.++..+|+.+.|. ++++
T Consensus 310 Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~-~yL~ 360 (399)
T 2pm7_A 310 MTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELAT-EFLN 360 (399)
T ss_dssp HHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHH-HHHH
No 351
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=21.73 E-value=1.1e+02 Score=31.43 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHhccc
Q 004851 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (727)
Q Consensus 262 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 294 (727)
+....++..+|.+|+.+++|++|..+.++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445677888999999999999999999999864
Done!