BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004854
(727 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 678 IYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPV 723
++VR E+R+D+ + I G TPY +G F FD++ P +YP PP+
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPL 145
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
++++E +L P I +D++D +RA I+G TPY G+F ++ +P YP EP
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 722 P 722
P
Sbjct: 68 P 68
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K++Q+E + + P D + R+ I+G G+ Y G+FF DI PEYP
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 720 EPP-VSFR 726
+PP V+FR
Sbjct: 110 KPPKVTFR 117
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++ +E S LE+ P + D + +A+I+G +PY G+FF I P +YP +
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 721 PP-VSF 725
PP +SF
Sbjct: 65 PPKISF 70
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 691 RAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
R I G GTPY G F DI +PP+YP+ PP
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K++Q+E + + P D + R+ I+G G+ Y G+FF DI P+YP
Sbjct: 5 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 720 EPP-VSFR 726
+PP V+FR
Sbjct: 65 KPPKVTFR 72
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 13 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 720 EPP 722
+PP
Sbjct: 73 KPP 75
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E L++ P D + +A I+G +PY G+FF I P +YP
Sbjct: 8 LKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 720 EPP 722
+PP
Sbjct: 68 KPP 70
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPP 722
+PP
Sbjct: 63 KPP 65
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 2 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 720 EPP 722
+PP
Sbjct: 62 KPP 64
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L K P D + +A I+G + +PY G+FF +I P +YP
Sbjct: 23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 720 EPP 722
+PP
Sbjct: 83 KPP 85
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 13 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 720 EPP 722
+PP
Sbjct: 73 KPP 75
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPP 722
+PP
Sbjct: 63 KPP 65
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPP 722
+PP
Sbjct: 63 KPP 65
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 11 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 720 EPP 722
+PP
Sbjct: 71 KPP 73
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L K P + D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 720 EPP 722
+PP
Sbjct: 63 KPP 65
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 720 EPP 722
+PP
Sbjct: 66 KPP 68
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
I G GTPY G + ++FLP +YP EPP
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPP 65
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 8 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 720 EPP 722
+PP
Sbjct: 68 KPP 70
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
I G GTPY G + ++FLP +YP EPP
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPP 65
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 9 LKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 720 EPP 722
+PP
Sbjct: 69 KPP 71
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP-VSF 725
+PP V+F
Sbjct: 65 KPPKVAF 71
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 6 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 720 EPP 722
+PP
Sbjct: 66 KPP 68
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
++ V +E + L P+ I V E+ + ++ I G +GTPY GLF + L ++P
Sbjct: 15 IRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74
Query: 720 EPPVSF 725
PP +
Sbjct: 75 SPPKGY 80
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 720 EPP-VSF 725
+PP V+F
Sbjct: 81 KPPKVAF 87
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 5 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 9 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 720 EPP 722
+PP
Sbjct: 69 KPP 71
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 720 EPP 722
+PP
Sbjct: 81 KPP 83
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 21 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 720 EPP 722
+PP
Sbjct: 81 KPP 83
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++ +E + L + P D + +A I+G +PY G+FF I P +YP +
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 721 PP 722
PP
Sbjct: 63 PP 64
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
+D + + I G + +PY DG+F +++LP +YP E P
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 67
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
+D + + I G + +PY DG+F +++LP +YP E P
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 67
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
+D + + I G + +PY DG+F +++LP +YP E P
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 67
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
+D + + I G + +PY DG+F +++LP +YP E P
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 69
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 682 IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
+ E + ++ +G GTPY G F DI +P EYP +PP
Sbjct: 27 VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 67
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 645 GASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHD 704
G+ +A+ ++KR + + ++ E ++ I V + ++ +R I G TPY
Sbjct: 16 GSMANIAVQRIKREFKEVLKSE-----ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEG 70
Query: 705 GLFFFDIFLPPEYPHEPP 722
G + +I +P YP PP
Sbjct: 71 GRYQLEIKIPETYPFNPP 88
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A +G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPP 722
+PP
Sbjct: 65 KPP 67
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
++++Q+E +++ P D + A I G +PY GLFF D+ P +YP
Sbjct: 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 720 EPP-VSF 725
+ P V+F
Sbjct: 66 KAPRVTF 72
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 645 GASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHD 704
G+ +A+ ++KR + + ++ E ++ I V + ++ +R I G TPY
Sbjct: 1 GSMANIAVQRIKREFKEVLKSE-----ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEG 55
Query: 705 GLFFFDIFLPPEYPHEPP 722
G + +I +P YP PP
Sbjct: 56 GRYQLEIKIPETYPFNPP 73
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 682 IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
+ E + ++ +G GTPY G F DI +P EYP +PP
Sbjct: 26 VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 66
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 649 GLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFF 708
+A++ + +K+ +E E++ I V + ++ +R I G TPY G +
Sbjct: 2 AMAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 61
Query: 709 FDIFLPPEYPHEPP 722
+I +P YP PP
Sbjct: 62 LEIKIPETYPFNPP 75
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 633 DMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRA 692
D+ +D D ++ + +K+ +E E++ I V + ++ +R
Sbjct: 35 DLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRG 94
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
I G TPY G + +I +P YP PP
Sbjct: 95 EIAGPPDTPYEGGRYQLEIKIPETYPFNPP 124
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ +++ P + D V + A I+G TPY DG F + EYP++
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 721 PP 722
PP
Sbjct: 67 PP 68
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ L++ P + E+ + A I G +GTP+ DG F I EYP++
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 721 PPV 723
PP
Sbjct: 67 PPT 69
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 649 GLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFF 708
G+A V+R +K+ +E E++ I V + ++ +R I G TPY G +
Sbjct: 1 GMANIAVQR--IKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 58
Query: 709 FDIFLPPEYPHEPP 722
+I +P YP PP
Sbjct: 59 LEIKIPETYPFNPP 72
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
+V +E L+K P + +D L+ A++ PYH F I PPEYP +P
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 67
Query: 722 PV 723
P+
Sbjct: 68 PM 69
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
+V +E L+K P + +D L+ A++ PYH F I PPEYP +P
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 722 PV 723
P+
Sbjct: 65 PM 66
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ L++ P + ED + A I G + TP+ DG F + EYP++
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 721 PPV 723
PP
Sbjct: 67 PPT 69
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ L++ P + ED + A I G + TP+ DG F + EYP++
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 721 PPV 723
PP
Sbjct: 70 PPT 72
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
I G +GTPY G F I +P +YP+ PP
Sbjct: 59 IKGPEGTPYEGGHFTLAITIPNDYPYNPP 87
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 644 LGASKGLALS---QVKRAWVKKVQQEWSILEKSLPE-TIYVRIFEDRVDLIRAAIVGAKG 699
LG+ G+ALS Q ++AW K + + P+ T+ + +E AI G KG
Sbjct: 3 LGSMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWE-------CAIPGKKG 55
Query: 700 TPYHDGLFFFDIFLPPEYPHEPP 722
TP+ GLF + +YP PP
Sbjct: 56 TPWEGGLFKLRMLFKDDYPSSPP 78
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 649 GLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFF 708
G ++ + R +K+ Q+ +L + +P I E I G + +P+ G F
Sbjct: 1 GSHMAGLPRRIIKETQR---LLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFK 56
Query: 709 FDIFLPPEYPHEPP 722
++FLP EYP P
Sbjct: 57 LELFLPEEYPMAAP 70
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 651 ALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFD 710
+++ + R +K+ Q+ +L + +P I E I G + +P+ G F +
Sbjct: 5 SMAGLPRRIIKETQR---LLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLE 60
Query: 711 IFLPPEYPHEPP 722
+FLP EYP P
Sbjct: 61 LFLPEEYPMAAP 72
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
E I G + +P+ G F ++FLP EYP P
Sbjct: 29 ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
E I G + +P+ G F ++FLP EYP P
Sbjct: 31 ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 69
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
E I G + +P+ G F ++FLP EYP P
Sbjct: 27 ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 65
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 645 GASKGLALS---QVKRAWVKKVQQEWSILEKSLPE-TIYVRIFEDRVDLIRAAIVGAKGT 700
G+ G+ALS Q ++AW K + + P+ T+ + +E AI G KGT
Sbjct: 1 GSMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWE-------CAIPGKKGT 53
Query: 701 PYHDGLFFFDIFLPPEYPHEPP 722
P+ GLF + +YP PP
Sbjct: 54 PWEGGLFKLRMLFKDDYPSSPP 75
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 45 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 74
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 46 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 75
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 73
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 73
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPP 722
AI G KGTP+ GLF + +YP PP
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPP 73
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++ +++ L++ P I ++ + L A I G TP+ G F + +YP++
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 721 PP 722
PP
Sbjct: 67 PP 68
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPP 715
++ +K++QQ +++ S P + E+ + + I G TPY DG+F + P
Sbjct: 6 QKRLLKELQQ---LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 716 EYPHEPP 722
+YP PP
Sbjct: 63 DYPLSPP 69
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 30/64 (46%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
++Q+E + K+ P + + + + VG + T Y + ++ I P YP +P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 722 PVSF 725
P+ +
Sbjct: 84 PIVY 87
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 696 GAKGTPYHDGLFFFDIFLPPEYPHEPP 722
G +GTPY DG + + LP +YP + P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSP 72
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 679 YVRIFEDRVDLIRA------------AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFR 726
Y+RI +D V I A + G + TPY G + + P E+P +PP +
Sbjct: 23 YLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYM 82
Query: 727 I 727
I
Sbjct: 83 I 83
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 660 VKKVQQEWSILEKSLPETIY---VRIFEDRVDLIR--AAIVGAKGTPYHDGLFFFDIFLP 714
++++Q+E K P Y V+ + +DL + A I G +GT + G++ + P
Sbjct: 8 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 715 PEYPHEPP 722
EYP +PP
Sbjct: 68 NEYPSKPP 75
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 660 VKKVQQEWSILEKSLPETIY---VRIFEDRVDLIR--AAIVGAKGTPYHDGLFFFDIFLP 714
++++Q+E K P Y V+ + +DL + A I G +GT + G++ + P
Sbjct: 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 715 PEYPHEPP 722
EYP +PP
Sbjct: 66 NEYPSKPP 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,391,048
Number of Sequences: 62578
Number of extensions: 974586
Number of successful extensions: 2222
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2146
Number of HSP's gapped (non-prelim): 85
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)