Query 004854
Match_columns 727
No_of_seqs 279 out of 1307
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ceg_A Baculoviral IAP repeat- 99.8 1.6E-18 5.6E-23 184.7 10.6 103 624-727 35-149 (323)
2 2ayv_A Ubiquitin-conjugating e 99.7 4.5E-18 1.6E-22 166.2 11.5 74 654-727 17-90 (166)
3 1zdn_A Ubiquitin-conjugating e 99.7 6.5E-18 2.2E-22 163.7 12.0 74 654-727 9-82 (158)
4 2h2y_A Ubiquitin-conjugating e 99.7 9.3E-18 3.2E-22 158.9 12.8 71 657-727 19-89 (136)
5 2fo3_A Ubiquitin-conjugating e 99.7 4.5E-18 1.5E-22 158.7 10.4 70 658-727 6-75 (125)
6 1yrv_A Ubiquitin-conjugating l 99.7 6.3E-18 2.2E-22 165.6 10.9 74 654-727 19-92 (169)
7 4gpr_A Ubiquitin-conjugating e 99.7 1.3E-17 4.4E-22 160.4 11.7 71 657-727 3-73 (151)
8 2e2c_A Ubiquitin conjugating e 99.7 1.2E-17 4E-22 161.5 10.8 73 655-727 6-78 (156)
9 2pwq_A Ubiquitin conjugating e 99.7 1.3E-17 4.4E-22 169.3 11.6 74 654-727 19-92 (216)
10 2a7l_A Hypothetical ubiquitin- 99.7 5.8E-18 2E-22 160.3 8.3 68 660-727 24-93 (136)
11 2c4o_A Ubiquitin-conjugating e 99.7 1.9E-17 6.4E-22 161.7 11.7 74 654-727 15-88 (165)
12 1yh2_A HSPC150 protein similar 99.7 2E-17 7E-22 161.9 11.7 71 657-727 3-73 (169)
13 3h8k_A Ubiquitin-conjugating e 99.7 2.1E-17 7.3E-22 160.8 11.5 71 657-727 2-73 (164)
14 2c2v_B Ubiquitin-conjugating e 99.7 1.2E-17 4.1E-22 161.2 9.6 70 658-727 5-74 (154)
15 2awf_A Ubiquitin-conjugating e 99.7 1.8E-17 6.2E-22 162.8 11.0 71 657-727 16-87 (172)
16 1z2u_A Ubiquitin-conjugating e 99.7 1.7E-17 5.9E-22 159.3 10.4 71 657-727 3-73 (150)
17 1ayz_A UBC2, ubiquitin-conjuga 99.7 1.8E-17 6.2E-22 162.4 10.5 70 658-727 4-73 (169)
18 2f4w_A Ubiquitin-conjugating e 99.7 1.6E-17 5.4E-22 165.3 10.2 73 655-727 11-83 (187)
19 3rcz_B SUMO-conjugating enzyme 99.7 1.7E-17 5.8E-22 161.7 9.7 73 655-727 7-84 (163)
20 2ucz_A UBC7, ubiquitin conjuga 99.7 3.4E-17 1.2E-21 159.6 11.8 71 657-727 3-74 (165)
21 2q0v_A Ubiquitin-conjugating e 99.7 3.5E-17 1.2E-21 158.4 11.4 74 654-727 17-94 (156)
22 1fxt_A Ubiquitin-conjugating e 99.7 1.8E-17 6.2E-22 159.0 8.9 69 659-727 2-71 (149)
23 3rz3_A Ubiquitin-conjugating e 99.7 3.5E-17 1.2E-21 162.3 11.1 72 656-727 5-77 (183)
24 2aak_A UBC1, ubiquitin conjuga 99.7 3.7E-17 1.3E-21 157.4 10.5 70 658-727 4-73 (152)
25 2r0j_A Ubiquitin carrier prote 99.7 3.7E-17 1.3E-21 156.9 10.1 68 660-727 3-70 (149)
26 3bzh_A Ubiquitin-conjugating e 99.7 4.8E-17 1.6E-21 162.7 10.9 71 657-727 47-117 (194)
27 1jat_A Ubiquitin-conjugating e 99.7 2.4E-17 8.3E-22 159.2 8.4 69 659-727 6-74 (155)
28 2a4d_A Ubiquitin-conjugating e 99.7 8.4E-17 2.9E-21 156.3 11.7 74 654-727 21-98 (160)
29 1i7k_A Ubiquitin-conjugating e 99.7 4.5E-17 1.5E-21 161.0 9.3 72 656-727 28-99 (179)
30 2f4z_A Tgtwinscan_2721 - E2 do 99.7 7.7E-17 2.6E-21 161.0 9.7 71 657-727 31-114 (193)
31 2grr_A Ubiquitin-conjugating e 99.7 8.3E-17 2.8E-21 156.4 9.6 72 656-727 5-81 (161)
32 2gjd_A Ubiquitin-conjugating e 99.7 8.1E-17 2.8E-21 155.9 9.5 70 658-727 4-78 (157)
33 2bep_A Ubiquitin-conjugating e 99.7 1.3E-16 4.5E-21 154.6 11.0 71 657-727 7-80 (159)
34 1jat_B Ubiquitin-conjugating e 99.7 1.9E-16 6.3E-21 150.2 10.5 70 658-727 6-79 (138)
35 2hlw_A Ubiquitin-conjugating e 99.7 2.6E-16 8.9E-21 154.3 10.5 91 636-727 14-108 (170)
36 3k9o_A Ubiquitin-conjugating e 99.6 2.3E-16 8E-21 158.4 9.9 70 658-727 5-77 (201)
37 2y9m_A Ubiquitin-conjugating e 99.6 6.4E-16 2.2E-20 151.7 10.8 71 657-727 5-87 (172)
38 3fn1_B NEDD8-conjugating enzym 99.6 4.7E-16 1.6E-20 151.9 9.6 73 654-727 10-83 (167)
39 3e46_A Ubiquitin-conjugating e 99.6 7.1E-16 2.4E-20 159.9 11.3 73 655-727 54-129 (253)
40 1wzv_A Ubiquitin-conjugating e 99.6 4.3E-16 1.5E-20 150.4 9.0 68 659-727 5-73 (155)
41 1y8x_A Ubiquitin-conjugating e 99.6 1.2E-15 4E-20 148.3 9.0 68 657-727 5-73 (160)
42 1tte_A Ubiquitin-conjugating e 99.6 2.6E-16 8.8E-21 159.7 4.1 69 659-727 3-72 (215)
43 4ds2_A Ubiquitin-conjugating e 99.6 7.7E-16 2.6E-20 150.4 6.9 70 658-727 8-91 (167)
44 2onu_A Ubiquitin-conjugating e 99.6 5.9E-16 2E-20 149.1 5.5 65 660-727 4-68 (152)
45 2nvu_C NEDD8-conjugating enzym 99.6 1.4E-15 4.7E-20 150.5 8.3 70 655-727 23-93 (180)
46 2z5d_A Ubiquitin-conjugating e 99.6 1.4E-15 4.9E-20 150.2 8.0 66 658-727 25-90 (179)
47 4ddg_A Ubiquitin-conjugating e 99.6 2.6E-15 8.9E-20 165.3 10.7 71 657-727 2-72 (399)
48 1zuo_A Hypothetical protein LO 99.6 1.7E-15 5.8E-20 150.6 5.8 74 654-727 23-111 (186)
49 1c4z_D UBCH7, ubiquitin conjug 99.6 1.6E-15 5.6E-20 146.2 5.1 68 659-727 3-71 (154)
50 1yf9_A Ubiquitin carrier prote 99.5 1.6E-14 5.4E-19 141.8 8.6 66 658-727 12-77 (171)
51 3o2u_A NEDD8-conjugating enzym 99.5 1.6E-14 5.5E-19 144.0 8.0 71 654-727 25-102 (190)
52 2z6o_A UFM1-conjugating enzyme 99.2 1.5E-12 5.2E-17 125.8 2.0 65 656-726 30-104 (172)
53 3kpa_A Probable ubiquitin fold 98.3 1.6E-07 5.6E-12 89.0 2.8 65 656-726 32-106 (168)
54 3r3q_A Suppressor protein STP2 97.5 0.00015 5.2E-09 70.3 7.5 66 661-726 31-102 (162)
55 3obq_A Tumor susceptibility ge 95.0 0.023 7.8E-07 54.2 5.0 38 685-726 51-90 (146)
56 2ebm_A RWD domain-containing p 91.9 0.51 1.8E-05 42.9 8.4 66 659-726 11-76 (128)
57 2day_A Ring finger protein 25; 90.6 0.96 3.3E-05 41.1 8.8 65 662-726 12-80 (128)
58 2yz0_A Serine/threonine-protei 89.6 1.2 4E-05 41.1 8.6 67 659-726 11-83 (138)
59 1ukx_A GCN2, GCN2 EIF2alpha ki 84.5 3 0.0001 38.2 8.2 68 658-726 10-84 (137)
60 2ebk_A RWD domain-containing p 78.1 2.7 9.3E-05 38.2 5.4 64 662-726 11-77 (128)
61 2ckk_A KIN17; beta barrel, rib 73.7 15 0.00052 33.8 9.1 65 71-137 33-108 (127)
62 2do3_A Transcription elongatio 73.1 4.2 0.00014 33.8 4.6 47 96-144 8-59 (69)
63 3mlq_E Transcription-repair co 68.0 5.7 0.00019 33.0 4.4 22 107-128 2-24 (71)
64 2daw_A RWD domain containing p 66.2 8.6 0.00029 36.3 5.9 65 657-725 13-95 (154)
65 2dax_A Protein C21ORF6; RWD do 64.1 3.2 0.00011 39.0 2.5 21 706-726 74-94 (152)
66 3dlm_A Histone-lysine N-methyl 58.6 1.5E+02 0.0052 29.6 14.1 142 54-210 5-191 (213)
67 2eqj_A Metal-response element- 57.4 18 0.0006 29.8 5.3 41 328-374 11-51 (66)
68 4hcz_A PHD finger protein 1; p 53.0 19 0.00064 28.9 4.7 40 329-374 2-41 (58)
69 2qqr_A JMJC domain-containing 44.0 1.9E+02 0.0064 26.3 10.8 93 56-150 4-113 (118)
70 3udc_A Small-conductance mecha 43.7 15 0.00053 37.9 3.8 53 52-109 123-176 (285)
71 3h43_A Proteasome-activating n 43.4 55 0.0019 27.9 6.6 45 118-174 19-65 (85)
72 3zqs_A E3 ubiquitin-protein li 41.7 47 0.0016 32.6 6.6 55 661-725 4-58 (186)
73 1w4s_A Polybromo, polybromo 1 39.2 34 0.0012 32.7 5.3 66 305-375 2-70 (174)
74 4a4f_A SurviVal of motor neuro 38.6 64 0.0022 25.7 6.0 54 328-394 6-61 (64)
75 4dov_A ORC1, origin recognitio 38.5 30 0.001 33.3 4.6 43 328-375 36-84 (163)
76 2xdp_A Lysine-specific demethy 35.3 2.6E+02 0.009 25.5 11.2 96 56-151 5-115 (123)
77 3s6w_A Tudor domain-containing 34.5 57 0.0019 25.0 4.9 49 332-393 3-53 (54)
78 1xs0_A Inhibitor of vertebrate 32.9 55 0.0019 30.6 5.2 59 301-376 41-101 (136)
79 2wg5_A General control protein 31.9 70 0.0024 28.5 5.7 45 118-174 38-84 (109)
80 1mhn_A SurviVal motor neuron p 30.9 1.1E+02 0.0036 23.9 6.0 55 329-395 2-57 (59)
81 2vv5_A MSCS, small-conductance 30.6 31 0.0011 35.6 3.6 38 52-93 124-162 (286)
82 3pmi_A PWWP domain-containing 29.8 28 0.00096 32.2 2.6 22 354-375 22-43 (134)
83 1nz9_A Transcription antitermi 29.6 85 0.0029 24.3 5.2 46 57-102 4-55 (58)
84 2e5p_A Protein PHF1, PHD finge 27.9 76 0.0026 26.1 4.6 40 329-374 8-47 (68)
85 3pnw_C Tudor domain-containing 27.5 1E+02 0.0036 25.6 5.7 54 329-395 16-71 (77)
86 2xk0_A Polycomb protein PCL; t 25.0 2.2E+02 0.0077 23.5 6.9 36 439-474 30-65 (69)
87 4a4f_A SurviVal of motor neuro 24.6 2.3E+02 0.0077 22.4 7.0 53 395-473 5-61 (64)
88 2oqk_A Putative translation in 21.4 99 0.0034 27.9 4.7 53 73-125 34-93 (117)
89 2e5q_A PHD finger protein 19; 21.2 97 0.0033 25.2 3.9 42 327-374 4-45 (63)
90 2dk3_A E3 ubiquitin-protein li 21.0 91 0.0031 26.9 4.0 25 439-463 37-62 (86)
91 2d9t_A Tudor domain-containing 20.9 1.9E+02 0.0065 23.9 6.0 55 329-395 8-63 (78)
92 2vv5_A MSCS, small-conductance 20.5 1E+02 0.0035 31.6 5.2 39 104-142 126-165 (286)
No 1
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=184.71 Aligned_cols=103 Identities=34% Similarity=0.630 Sum_probs=87.5
Q ss_pred CCCCCcceeEeccCCCC--------CccccccccccccccchHHHHHHHHHHHHHHhCCCC----CEEEEEcCCCCceEE
Q 004854 624 NSEDQFRQFDMVSDSSD--------HHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPE----TIYVRIFEDRVDLIR 691 (727)
Q Consensus 624 ~~~~~f~~f~~~~~~~d--------hhf~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~----gI~v~~~ednl~~w~ 691 (727)
.+..+|.+|+++.+.+| |||.+..... ....+..+.+||+||++.|++++|+ ++++.+.++||++|+
T Consensus 35 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~ 113 (323)
T 3ceg_A 35 MKKLQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNA-NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMK 113 (323)
T ss_dssp HHTTSEEEECCEEECTTSCEEESSCCTTHHHHHTC-CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEE
T ss_pred HHHhcCceeeecccccccccccccchHHHhhhhcc-CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccE
Confidence 46789999999987665 6775432221 1245678899999999999999887 567888999999999
Q ss_pred EEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 692 AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 692 ~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
++|.||.+|||+||+|+|+|.||++||++||+|+|+
T Consensus 114 ~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp EEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred EEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 999999999999999999999999999999999995
No 2
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.74 E-value=4.5e-18 Score=166.18 Aligned_cols=74 Identities=27% Similarity=0.496 Sum_probs=69.2
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.....+.+||+||+++|++++|+||.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 90 (166)
T 2ayv_A 17 LYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT 90 (166)
T ss_dssp --CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred ccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeec
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999995
No 3
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=99.74 E-value=6.5e-18 Score=163.72 Aligned_cols=74 Identities=27% Similarity=0.513 Sum_probs=71.0
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+..+.+||+||++.|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 9 ~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 82 (158)
T 1zdn_A 9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFL 82 (158)
T ss_dssp CSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEec
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999995
No 4
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.74 E-value=9.3e-18 Score=158.86 Aligned_cols=71 Identities=20% Similarity=0.410 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~ 89 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFL 89 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999995
No 5
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=99.74 E-value=4.5e-18 Score=158.75 Aligned_cols=70 Identities=19% Similarity=0.419 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~ 75 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFL 75 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999999995
No 6
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=99.73 E-value=6.3e-18 Score=165.63 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=69.9
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+..+.+||+||+++|++++++||++.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 19 ~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 92 (169)
T 1yrv_A 19 SMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI 92 (169)
T ss_dssp GGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEES
T ss_pred ccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceec
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999995
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=99.73 E-value=1.3e-17 Score=160.41 Aligned_cols=71 Identities=25% Similarity=0.501 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 73 (151)
T 4gpr_A 3 AMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM 73 (151)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEe
Confidence 56789999999999999999999999999999999999999999999999999999999999999999995
No 8
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=99.72 E-value=1.2e-17 Score=161.51 Aligned_cols=73 Identities=26% Similarity=0.245 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+..+.+||+||++.|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 78 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT 78 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995
No 9
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=99.72 E-value=1.3e-17 Score=169.32 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=70.2
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.....+.+||+||+++|++++|+||++.+.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~ 92 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFV 92 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCccccc
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999995
No 10
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.72 E-value=5.8e-18 Score=160.33 Aligned_cols=68 Identities=21% Similarity=0.338 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhCCCCCEEEE--EcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 660 VKKVQQEWSILEKSLPETIYVR--IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 660 ~kRL~kEl~~L~~~~p~gI~v~--~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+||+||+++|++++|+||++. +.++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 93 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT 93 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEe
Confidence 4899999999999999999975 7889999999999999999999999999999999999999999994
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=99.72 E-value=1.9e-17 Score=161.67 Aligned_cols=74 Identities=26% Similarity=0.490 Sum_probs=69.9
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+....+.+||+||+++|++++|+||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~ 88 (165)
T 2c4o_A 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999995
No 12
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.72 E-value=2e-17 Score=161.95 Aligned_cols=71 Identities=30% Similarity=0.569 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.++||++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~ 73 (169)
T 1yh2_A 3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFL 73 (169)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999995
No 13
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=99.71 E-value=2.1e-17 Score=160.84 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCC-CCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFED-RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ed-nl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 73 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 73 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEc
Confidence 35789999999999999999999998766 999999999999999999999999999999999999999995
No 14
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=99.71 E-value=1.2e-17 Score=161.19 Aligned_cols=70 Identities=23% Similarity=0.389 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 74 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFM 74 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEee
Confidence 4468999999999999999999999999999999999999999999999999999999999999999995
No 15
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=99.71 E-value=1.8e-17 Score=162.78 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcC-CCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFE-DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~e-dnl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.+ +||+.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 16 ~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~ 87 (172)
T 2awf_A 16 PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87 (172)
T ss_dssp CTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCccccc
Confidence 4568899999999999999999999865 7999999999999999999999999999999999999999995
No 16
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=99.71 E-value=1.7e-17 Score=159.32 Aligned_cols=71 Identities=28% Similarity=0.519 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 73 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 73 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999995
No 17
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.71 E-value=1.8e-17 Score=162.37 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||++.|++++|+||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 4 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~ 73 (169)
T 1ayz_A 4 PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFL 73 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999995
No 18
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.71 E-value=1.6e-17 Score=165.26 Aligned_cols=73 Identities=19% Similarity=0.400 Sum_probs=68.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
....+.+||+||+++|++++|+||.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 11 ~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~ 83 (187)
T 2f4w_A 11 APTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMI 83 (187)
T ss_dssp ---CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred CccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999995
No 19
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=99.71 E-value=1.7e-17 Score=161.69 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFED-----RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed-----nl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+..+.+||+||+++|++++|+||++.+.++ ||++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~ 84 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT 84 (163)
T ss_dssp --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence 3456799999999999999999999999866 999999999999999999999999999999999999999995
No 20
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.71 E-value=3.4e-17 Score=159.62 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcC-CCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFE-DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~e-dnl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++++||++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~ 74 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEe
Confidence 3678999999999999999999999865 7999999999999999999999999999999999999999995
No 21
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.70 E-value=3.5e-17 Score=158.39 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=67.2
Q ss_pred ccchHHHHHHHHHHHHHHhC-CCCCEEEEEcC-C--CCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKS-LPETIYVRIFE-D--RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~-~p~gI~v~~~e-d--nl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.....+.+||+||+++|+++ ++++|.+.+.+ + ||+.|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 94 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFD 94 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEE
Confidence 45566789999999999998 78899998843 3 599999999999999999999999999999999999999995
No 22
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=99.70 E-value=1.8e-17 Score=159.02 Aligned_cols=69 Identities=26% Similarity=0.519 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCC-CCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRIFED-RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ed-nl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+||+||++.|++++|+||++.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 71 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFD 71 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEES
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEe
Confidence 468999999999999999999999887 999999999999999999999999999999999999999995
No 23
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=99.70 E-value=3.5e-17 Score=162.27 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 656 KRAWVKKVQQEWSILEKSLPETIYVR-IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~-~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
...+.|||+||+++|++++|+||++. +.++||++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 77 (183)
T 3rz3_A 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFL 77 (183)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEec
Confidence 35678999999999999999999999 6788999999999999999999999999999999999999999995
No 24
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=99.70 E-value=3.7e-17 Score=157.36 Aligned_cols=70 Identities=23% Similarity=0.446 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 4 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 73 (152)
T 2aak_A 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFV 73 (152)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999999999999995
No 25
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=99.69 E-value=3.7e-17 Score=156.92 Aligned_cols=68 Identities=28% Similarity=0.528 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 660 ~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+||+||+++|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 70 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEec
Confidence 57999999999999999999999999999999999999999999999999999999999999999995
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=99.69 E-value=4.8e-17 Score=162.67 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|++++|+||++.+.++||++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 117 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFR 117 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCcccccc
Confidence 55789999999999999999999999999999999999999999999999999999999999999999995
No 27
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=99.69 E-value=2.4e-17 Score=159.17 Aligned_cols=69 Identities=26% Similarity=0.497 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+||+||++.|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 74 (155)
T 1jat_A 6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFL 74 (155)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceee
Confidence 468999999999999999999999999999999999999999999999999999999999999999995
No 28
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.69 E-value=8.4e-17 Score=156.29 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=66.4
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCC-EEEEE-cCCC--CceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPET-IYVRI-FEDR--VDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~g-I~v~~-~edn--l~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+....+.+||+||+++|++++|+| |.+.+ .++| |+.|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 98 (160)
T 2a4d_A 21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV 98 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEe
Confidence 334557899999999999999998 77777 4555 89999999999999999999999999999999999999995
No 29
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=99.68 E-value=4.5e-17 Score=160.98 Aligned_cols=72 Identities=26% Similarity=0.242 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
...+.+||+||++.|++++++||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 99 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFL 99 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEES
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999999999999995
No 30
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.67 E-value=7.7e-17 Score=161.03 Aligned_cols=71 Identities=27% Similarity=0.487 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHhCCC-------------CCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCe
Q 004854 657 RAWVKKVQQEWSILEKSLP-------------ETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPV 723 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p-------------~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~ 723 (727)
..+.+||+||+++|+++++ .||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus 31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~ 110 (193)
T 2f4z_A 31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK 110 (193)
T ss_dssp -CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCe
Confidence 4578999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred eEeC
Q 004854 724 SFRI 727 (727)
Q Consensus 724 V~Fl 727 (727)
|+|+
T Consensus 111 V~F~ 114 (193)
T 2f4z_A 111 MKFV 114 (193)
T ss_dssp EEES
T ss_pred EEEe
Confidence 9995
No 31
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=99.67 E-value=8.3e-17 Score=156.41 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcC-----CCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 656 KRAWVKKVQQEWSILEKSLPETIYVRIFE-----DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~~~e-----dnl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+..+.+||+||+++|++++|+||++.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 5 ~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 35678999999999999999999998863 6899999999999999999999999999999999999999995
No 32
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=99.67 E-value=8.1e-17 Score=155.86 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcC-----CCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFE-----DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~e-----dnl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||++.|++++|+||++.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 4 ~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 78 (157)
T 2gjd_A 4 LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP 78 (157)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence 568999999999999999999999875 4899999999999999999999999999999999999999995
No 33
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=99.67 E-value=1.3e-16 Score=154.61 Aligned_cols=71 Identities=28% Similarity=0.531 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKS---LPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~---~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++|+++ ++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 7 ~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 80 (159)
T 2bep_A 7 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEee
Confidence 46789999999999985 588999999999999999999999999999999999999999999999999995
No 34
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.66 E-value=1.9e-16 Score=150.22 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEEcC-C--CCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKS-LPETIYVRIFE-D--RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~-~p~gI~v~~~e-d--nl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||+++|+++ +++||.+.+.+ + |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 79 (138)
T 1jat_B 6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI 79 (138)
T ss_dssp CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence 3468999999999998 78899998843 3 599999999999999999999999999999999999999995
No 35
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=154.29 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=72.8
Q ss_pred cCCCCCccccccccccccccchHHHHHHHHHHHHHHhCCCCC-EEEEE-cCCC--CceEEEEEEcCCCCCCCCcEEEEEE
Q 004854 636 SDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPET-IYVRI-FEDR--VDLIRAAIVGAKGTPYHDGLFFFDI 711 (727)
Q Consensus 636 ~~~~dhhf~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~g-I~v~~-~edn--l~~w~~~I~GP~~TPYegG~F~f~I 711 (727)
...++||+..-.... .+.....+.+||+||+++|++++++| |.+.+ .++| |++|+++|.||++|||+||.|+|+|
T Consensus 14 s~~~~~~~~~p~~~~-~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i 92 (170)
T 2hlw_A 14 SKLSDEGRLEPRKFH-CKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92 (170)
T ss_dssp CSSSCSSCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEE
T ss_pred cccccccccCCcccc-CCcccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEE
Confidence 346677776433221 11122446799999999999999998 66776 4554 9999999999999999999999999
Q ss_pred ECCCCCCCCCCeeEeC
Q 004854 712 FLPPEYPHEPPVSFRI 727 (727)
Q Consensus 712 ~fP~~YP~~PP~V~Fl 727 (727)
.||++||++||+|+|+
T Consensus 93 ~fp~~YP~~PP~v~F~ 108 (170)
T 2hlw_A 93 ECGPKYPEAPPFVRFV 108 (170)
T ss_dssp ECCSSCTTSCCEEEEC
T ss_pred ECCCCCCCCCCeeEEe
Confidence 9999999999999995
No 36
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=99.65 E-value=2.3e-16 Score=158.45 Aligned_cols=70 Identities=29% Similarity=0.537 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhC---CCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKS---LPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~---~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||+++|+++ +|.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 77 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 77 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccc
Confidence 4589999999999987 478999999999999999999999999999999999999999999999999995
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.63 E-value=6.4e-16 Score=151.74 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHh-C-C------CC---CEEEEE-cCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCee
Q 004854 657 RAWVKKVQQEWSILEK-S-L------PE---TIYVRI-FEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVS 724 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~-~-~------p~---gI~v~~-~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V 724 (727)
..+.+||+||+++|++ . + |. ++.+.+ .++|+++|+++|.||++|||+||.|+|+|.||++||++||+|
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v 84 (172)
T 2y9m_A 5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI 84 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEE
Confidence 5678999999999998 4 3 44 467788 788999999999999999999999999999999999999999
Q ss_pred EeC
Q 004854 725 FRI 727 (727)
Q Consensus 725 ~Fl 727 (727)
+|+
T Consensus 85 ~f~ 87 (172)
T 2y9m_A 85 SFM 87 (172)
T ss_dssp EEC
T ss_pred EEe
Confidence 995
No 38
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.63 E-value=4.7e-16 Score=151.88 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=67.4
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEE-cCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVRI-FEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~-~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+....+.+||+||+++|++++|+||++.+ .+++++.|.++| ||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 10 ~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 83 (167)
T 3fn1_B 10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCL 83 (167)
T ss_dssp CCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEEC
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEec
Confidence 44567799999999999999999999986 467899999998 99999999999999999999999999999995
No 39
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=99.63 E-value=7.1e-16 Score=159.88 Aligned_cols=73 Identities=27% Similarity=0.522 Sum_probs=68.5
Q ss_pred cchHHHHHHHHHHHHHHhC---CCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 655 VKRAWVKKVQQEWSILEKS---LPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~---~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+..+.+||+||+++|+++ +|.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 129 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 129 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence 3467899999999999987 478999999999999999999999999999999999999999999999999995
No 40
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=99.63 E-value=4.3e-16 Score=150.38 Aligned_cols=68 Identities=28% Similarity=0.389 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCCCEEE-EEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 659 WVKKVQQEWSILEKSLPETIYV-RIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v-~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+||+||+++|++++|+||.+ .+.++|+++|+++|. |++|||+||.|+|+|.||++||++||+|+|+
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 73 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 73 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceee
Confidence 5789999999999999999999 788999999999999 9999999999999999999999999999995
No 41
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.60 E-value=1.2e-15 Score=148.26 Aligned_cols=68 Identities=25% Similarity=0.338 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVR-IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~-~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.+||+||+++| ++|+||++. +.++||++|+++| ||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 73 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEEC
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEe
Confidence 45789999999999 688999998 7889999999988 99999999999999999999999999999995
No 42
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=99.60 E-value=2.6e-16 Score=159.68 Aligned_cols=69 Identities=26% Similarity=0.519 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCC-CCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRIFED-RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ed-nl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+||+||++.|++++|+||++.+.++ ++++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~ 72 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFD 72 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEET
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCccccc
Confidence 478999999999999999999999776 567999999999999999999999999999999999999995
No 43
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.59 E-value=7.7e-16 Score=150.43 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhCC------------CCCEEEEEcCCCCceEEEEEEcCCCCCCC--CcEEEEEEECCCCCCCCCCe
Q 004854 658 AWVKKVQQEWSILEKSL------------PETIYVRIFEDRVDLIRAAIVGAKGTPYH--DGLFFFDIFLPPEYPHEPPV 723 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~------------p~gI~v~~~ednl~~w~~~I~GP~~TPYe--gG~F~f~I~fP~~YP~~PP~ 723 (727)
.+.+||+||++.|++++ +.+|++.+.++|+++|+++|.||++|||+ ||.|+|+|.||++||++||+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 45789999999999987 78999999999999999999999999999 99999999999999999999
Q ss_pred eEeC
Q 004854 724 SFRI 727 (727)
Q Consensus 724 V~Fl 727 (727)
|+|+
T Consensus 88 v~f~ 91 (167)
T 4ds2_A 88 VRFV 91 (167)
T ss_dssp EEES
T ss_pred EEEe
Confidence 9995
No 44
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=99.59 E-value=5.9e-16 Score=149.14 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 660 ~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+||+||++.|+++ ||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 4 ~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 68 (152)
T 2onu_A 4 LTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFM 68 (152)
T ss_dssp CCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEe
Confidence 47999999999874 788999999999999999999999999999999999999999999999995
No 45
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.59 E-value=1.4e-15 Score=150.48 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEE-EcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 655 VKRAWVKKVQQEWSILEKSLPETIYVR-IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~-~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
....+.+||+||+++| ++|+||++. +.++|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 23 ~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~ 93 (180)
T 2nvu_C 23 KASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 93 (180)
T ss_dssp SCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEEC
T ss_pred CccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCcee
Confidence 3456789999999999 688999998 7889999999988 99999999999999999999999999999995
No 46
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=150.18 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||+||+++|++ +||.+.+. +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~ 90 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM 90 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEe
Confidence 578999999999984 57888887 5799999999999999999999999999999999999999995
No 47
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.58 E-value=2.6e-15 Score=165.30 Aligned_cols=71 Identities=27% Similarity=0.524 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
..+.|||+||++.|++++|+||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 72 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEES
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999995
No 48
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.56 E-value=1.7e-15 Score=150.56 Aligned_cols=74 Identities=12% Similarity=0.226 Sum_probs=68.3
Q ss_pred ccchHHHHHHHHHHHHHHhCC---CCCEEEEEcCCCCceEEEEEEcC-CCCCCCC-----------cEEEEEEECCCCCC
Q 004854 654 QVKRAWVKKVQQEWSILEKSL---PETIYVRIFEDRVDLIRAAIVGA-KGTPYHD-----------GLFFFDIFLPPEYP 718 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~---p~gI~v~~~ednl~~w~~~I~GP-~~TPYeg-----------G~F~f~I~fP~~YP 718 (727)
+.+..+.+||+||+++|++++ +.+|.+.+.++||+.|+++|.|| ++|||++ |.|+|+|.||++||
T Consensus 23 ~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP 102 (186)
T 1zuo_A 23 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP 102 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTT
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCC
Confidence 345678899999999999998 68899999999999999999998 9999998 89999999999999
Q ss_pred CCCCeeEeC
Q 004854 719 HEPPVSFRI 727 (727)
Q Consensus 719 ~~PP~V~Fl 727 (727)
++||+|+|+
T Consensus 103 ~~PP~V~f~ 111 (186)
T 1zuo_A 103 FDPPFVRVV 111 (186)
T ss_dssp SSCCEEEEE
T ss_pred CCCCeEEEe
Confidence 999999984
No 49
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=99.55 E-value=1.6e-15 Score=146.17 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEE-cCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRI-FEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~-~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+.+||+||+++|++++|+||.+.+ .++|+++|+++|. |.+|||+||.|+|+|.||++||++||+|+|+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 71 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFK 71 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEe
Confidence 457999999999999999998654 6789999999998 9999999999999999999999999999995
No 50
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=99.52 E-value=1.6e-14 Score=141.77 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
.+.+||++|++.|++++. ++ ..++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~ 77 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFC 77 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEee
Confidence 457899999999999874 44 3578999999999999999999999999999999999999999995
No 51
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=99.51 E-value=1.6e-14 Score=144.00 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEE----EcCCCCc---eEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEe
Q 004854 654 QVKRAWVKKVQQEWSILEKSLPETIYVR----IFEDRVD---LIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~----~~ednl~---~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~F 726 (727)
+....+.+||+||+++|+ +|++|++. +.++|++ +|+++|. |++|||+||.|+|+|.||++||++||+|+|
T Consensus 25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 344667899999999998 78899998 7889999 9999997 888999999999999999999999999999
Q ss_pred C
Q 004854 727 I 727 (727)
Q Consensus 727 l 727 (727)
+
T Consensus 102 ~ 102 (190)
T 3o2u_A 102 L 102 (190)
T ss_dssp C
T ss_pred e
Confidence 5
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.23 E-value=1.5e-12 Score=125.75 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCc----------EEEEEEECCCCCCCCCCeeE
Q 004854 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDG----------LFFFDIFLPPEYPHEPPVSF 725 (727)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG----------~F~f~I~fP~~YP~~PP~V~ 725 (727)
...|.+||++|++.|++ ++.+..+|+..|.++|.||.+|||+|| .|.+.|.||.+||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 47899999999999998 356677899999999999999999999 99999999999999999999
Q ss_pred e
Q 004854 726 R 726 (727)
Q Consensus 726 F 726 (727)
|
T Consensus 104 F 104 (172)
T 2z6o_A 104 V 104 (172)
T ss_dssp C
T ss_pred e
Confidence 8
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=98.33 E-value=1.6e-07 Score=88.96 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCc----------EEEEEEECCCCCCCCCCeeE
Q 004854 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDG----------LFFFDIFLPPEYPHEPPVSF 725 (727)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG----------~F~f~I~fP~~YP~~PP~V~ 725 (727)
...|..||..|++.|-+ +|.....+=..|..++.||.||+|.|+ .|.+.|.||.+||+.||.|+
T Consensus 32 ~~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~ 105 (168)
T 3kpa_A 32 GDKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIA 105 (168)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEee
Confidence 46699999999999843 222233334579999999999999999 89999999999999999998
Q ss_pred e
Q 004854 726 R 726 (727)
Q Consensus 726 F 726 (727)
|
T Consensus 106 F 106 (168)
T 3kpa_A 106 L 106 (168)
T ss_dssp C
T ss_pred c
Confidence 8
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=97.52 E-value=0.00015 Score=70.34 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCC---CCEEEEEcCCCCceEEEEEEcCCCCCCCCcE---EEEEEECCCCCCCCCCeeEe
Q 004854 661 KKVQQEWSILEKSLP---ETIYVRIFEDRVDLIRAAIVGAKGTPYHDGL---FFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 661 kRL~kEl~~L~~~~p---~gI~v~~~ednl~~w~~~I~GP~~TPYegG~---F~f~I~fP~~YP~~PP~V~F 726 (727)
+|..+|+..+.+.-| +...+...++....+-+.+.|+-.++|+||. |.+.|.||.+||++||.|.|
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v 102 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISI 102 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEE
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEE
Confidence 456667666644332 3334456778788888899998889999999 88999999999999999976
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=94.95 E-value=0.023 Score=54.16 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=33.3
Q ss_pred CCCceEEEEEEcCCCCCCCCcEEEE--EEECCCCCCCCCCeeEe
Q 004854 685 DRVDLIRAAIVGAKGTPYHDGLFFF--DIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 685 dnl~~w~~~I~GP~~TPYegG~F~f--~I~fP~~YP~~PP~V~F 726 (727)
.+|..|.++|. .+|+|+.|.+ .|.||.+||++||.|.+
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~vfv 90 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFV 90 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEEEE
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEEEE
Confidence 47888888887 7899999995 99999999999999953
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.91 E-value=0.51 Score=42.94 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEe
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~F 726 (727)
...+...|+..|+.--+..+.+. ......+++.|..-.+..-+.-.+.+.|.||++||..||.+..
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l 76 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEI 76 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEE
Confidence 34567889999987666666442 2223556666652222222334789999999999999999864
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=90.61 E-value=0.96 Score=41.09 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCCEEEEEcCC--CCceEEEEEEcCCCCCC--CCcEEEEEEECCCCCCCCCCeeEe
Q 004854 662 KVQQEWSILEKSLPETIYVRIFED--RVDLIRAAIVGAKGTPY--HDGLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 662 RL~kEl~~L~~~~p~gI~v~~~ed--nl~~w~~~I~GP~~TPY--egG~F~f~I~fP~~YP~~PP~V~F 726 (727)
....|+..|+.--+..+.+..... ....+++.|..+.+..- ..-.+.+.|.||++||..||.|..
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~ 80 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISI 80 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEE
Confidence 578899999877676665543221 23445555543322111 124788999999999999999864
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=89.61 E-value=1.2 Score=41.11 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcC------CCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEe
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRIFE------DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~e------dnl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~F 726 (727)
...+...|+..|+.--+..+.+.... .....+++.|....+ +-..-.+.+.|.||++||..||.|.+
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l 83 (138)
T 2yz0_A 11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEF 83 (138)
T ss_dssp HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEE
T ss_pred hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEE
Confidence 34466788999987666554332111 124567777774332 21234789999999999999999864
No 59
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=84.48 E-value=3 Score=38.20 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CCceEEEEEEcCCC-C-CCCCcEEEEEEECCCCCCCCCCeeEe
Q 004854 658 AWVKKVQQEWSILEKSLPETIYVRIFED-----RVDLIRAAIVGAKG-T-PYHDGLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ed-----nl~~w~~~I~GP~~-T-PYegG~F~f~I~fP~~YP~~PP~V~F 726 (727)
....+...|+..|+.--+..+.+..... ....+++.|. |.+ . .-..-.+.|.|.||++||..||.|..
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l 84 (137)
T 1ukx_A 10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDL 84 (137)
T ss_dssp CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEE
Confidence 4456778899999876666654422111 1345666665 321 1 11124689999999999999998864
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.12 E-value=2.7 Score=38.15 Aligned_cols=64 Identities=22% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCC--CEEEEE-cCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEe
Q 004854 662 KVQQEWSILEKSLPE--TIYVRI-FEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 662 RL~kEl~~L~~~~p~--gI~v~~-~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~F 726 (727)
....|+..|+.--+. .+.+.. ...+...+++.|...... =..-.+.+.|.||++||..||.|..
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l 77 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISI 77 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCC
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEE
Confidence 456788888764442 333211 112234677777632210 0123799999999999999998753
No 61
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=73.65 E-value=15 Score=33.83 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=50.3
Q ss_pred CCCeEEEEEEe--EEEEEEec-CCeeeeCCCccccccCCCcCCCCEEE--eCCe---eeEEEEEEe---eEEEEeCCC
Q 004854 71 SGQMGRVININ--MLVDLEGI-PGYIIKDVNSKNILKIRSISVGDFVV--LGAW---LGRVDKVID---SVNIVLDDG 137 (727)
Q Consensus 71 ~gQ~G~V~~V~--~~vdL~~~-~g~vi~~V~s~~L~~i~~f~~GDyVv--~g~W---lG~V~~V~~---~v~v~~~dG 137 (727)
-+|-|+|.+|. -+|.++.. +|.+| .|..+.|..+-+ ..|+.|. .|.+ .|++..+.. .++|.++.|
T Consensus 33 y~~KgvV~~V~~~~~c~V~l~~~g~~v-~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~l~~~ 108 (127)
T 2ckk_A 33 HKKKAIVKEVIDKYTAVVKMIDSGDKL-KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINEKTFSATIVIETG 108 (127)
T ss_dssp TTCEEEEEEEETTTEEEEEETTTCCEE-EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEECSS
T ss_pred cCceEEEEEecCCCeEEEEECCCCCEE-EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEEEccC
Confidence 56999999993 47777764 68888 899999999999 8999887 5554 666666643 578888763
No 62
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=73.15 E-value=4.2 Score=33.84 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=39.1
Q ss_pred CCCccccccCCCcCCCCEEE-----eCCeeeEEEEEEeeEEEEeCCCCeEEEcc
Q 004854 96 DVNSKNILKIRSISVGDFVV-----LGAWLGRVDKVIDSVNIVLDDGSKYEVTA 144 (727)
Q Consensus 96 ~V~s~~L~~i~~f~~GDyVv-----~g~WlG~V~~V~~~v~v~~~dGs~c~v~~ 144 (727)
.+|.++|++ .|.+||+|- |..=.|-|..|.++.++.|+|-...+|..
T Consensus 8 ~~p~~~LrK--~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 8 EFPAQELRK--YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp CCCCCCCCS--SCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred EEcHHHcee--eccCCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 478889986 499999997 44557899999999999999998877753
No 63
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=68.00 E-value=5.7 Score=33.02 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=6.9
Q ss_pred CcCCCCEEEeCCe-eeEEEEEEe
Q 004854 107 SISVGDFVVLGAW-LGRVDKVID 128 (727)
Q Consensus 107 ~f~~GDyVv~g~W-lG~V~~V~~ 128 (727)
.|.+||||||..- ||++..+..
T Consensus 2 ~l~~GD~VVh~~hGiG~~~gi~~ 24 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLGLET 24 (71)
T ss_dssp --------------CEEEEEEEE
T ss_pred cCCCCCEEEECCCeeEEEeEEEE
Confidence 5889999998766 999887654
No 64
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=66.18 E-value=8.6 Score=36.26 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHhCCC--CCEEEEEcC-------------CC-C--ceEEEEEEcCCCCCCCCcEEEEEEECCCCCC
Q 004854 657 RAWVKKVQQEWSILEKSLP--ETIYVRIFE-------------DR-V--DLIRAAIVGAKGTPYHDGLFFFDIFLPPEYP 718 (727)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p--~gI~v~~~e-------------dn-l--~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP 718 (727)
.....+-..|+..|+.--| .-+.+.-.. .+ . ..+++.|.-.. + ...+.+.|.||.+||
T Consensus 13 ~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~--~--~~~i~L~v~lP~~YP 88 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEE--P--KVKIDLQVTMPHSYP 88 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETT--T--TEEEEEEEEECSSTT
T ss_pred hhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCC--C--CceEEEEEEcCCCCC
Confidence 3445566778888887655 445442100 01 1 24444443221 1 237999999999999
Q ss_pred CCCCeeE
Q 004854 719 HEPPVSF 725 (727)
Q Consensus 719 ~~PP~V~ 725 (727)
..||.|.
T Consensus 89 ~~~P~i~ 95 (154)
T 2daw_A 89 YLALQLF 95 (154)
T ss_dssp SSCCEEE
T ss_pred CCCCcEE
Confidence 9999885
No 65
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=64.12 E-value=3.2 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.7
Q ss_pred EEEEEEECCCCCCCCCCeeEe
Q 004854 706 LFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 706 ~F~f~I~fP~~YP~~PP~V~F 726 (727)
.+.+.|.||.+||..||.+..
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l 94 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITV 94 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEE
T ss_pred eEEEEEECCCCCCCCCCeEEE
Confidence 588999999999999998864
No 66
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=58.62 E-value=1.5e+02 Score=29.60 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=82.3
Q ss_pred eeccccCCCee-eecCCCCCCeEEEEEEeE-----EEEEEec-CCeeeeCCCcccccc-----CCCcCCCCEEEe---C-
Q 004854 54 FDRGFTHGDIV-RSVTDPSGQMGRVININM-----LVDLEGI-PGYIIKDVNSKNILK-----IRSISVGDFVVL---G- 117 (727)
Q Consensus 54 ~DR~~~~GDvV-r~~~d~~gQ~G~V~~V~~-----~vdL~~~-~g~vi~~V~s~~L~~-----i~~f~~GDyVv~---g- 117 (727)
.|--+..|..| .+-.+..=..|+|++|.. ..++... .|+.| |+...|-. ...+.+|-.||. +
T Consensus 5 ~~~~l~Vg~~vlg~k~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~i--vs~~hiA~~~~p~~~~l~vG~RVVA~~~~~ 82 (213)
T 3dlm_A 5 FQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSL--LSGNHIAYDYHPPADKLYVGSRVVAKYKDG 82 (213)
T ss_dssp EETTEETTCEEEEECTTSBEEEEEEEEEEEETTEEEEEEEESSSCEEE--ECGGGEEESSCCCGGGCCTTCEEEEEEECS
T ss_pred ccCcEEEccEEEEEecCCcEEEEEEEEEEECCCCeEEEEEEcCCCCEE--eecceEEEecCCCccEEeEEEEEEEEecCC
Confidence 45556688888 455555568999999665 3455544 34333 22222222 235779999992 2
Q ss_pred ----CeeeEEEEEEe-----eEEEEeCCCCeEEEcccCcccc--------ccCCCC-----------CCCCCC-CCcCCC
Q 004854 118 ----AWLGRVDKVID-----SVNIVLDDGSKYEVTAVDHEKL--------LPISPS-----------LLEDSQ-YPYYPG 168 (727)
Q Consensus 118 ----~WlG~V~~V~~-----~v~v~~~dGs~c~v~~~d~~~L--------~~~~~~-----------~~~d~~-~~~yPG 168 (727)
-..|.|-|.-. .-.|-||||-.-=+...+-+.+ .++.+. .+++-+ .-+-+|
T Consensus 83 ~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~V~~Vc~~s~~vW~di~~~~~r~FIk~YL~~yP~rpmv~~~~G 162 (213)
T 3dlm_A 83 NQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSG 162 (213)
T ss_dssp SCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGGEEEBSSCCSSGGGGCSCHHHHHHHHHHHHHTTCCCCCCCCTT
T ss_pred CCcceeeeEEEECCccCCCceEEEEEeCCCcceecCceEEEEEEcccchhhhcCcchhHHHHHHHHHhCCCCceEEcCCC
Confidence 35688887765 5788999996322222211111 111110 012112 236799
Q ss_pred ceeEeecCcccccccccCCCCCceeeeEEEEEEeEEEEEEEE
Q 004854 169 QRVKVRLSTVKSVSWLCGTGRENQVEGTVCKVDAGLVYVDWL 210 (727)
Q Consensus 169 Q~V~~~~~~~~~~~Wl~g~~~~~r~~gtV~~V~~~~v~V~Wl 210 (727)
|++.+- .+++| ...+|.+|....+.|.-.
T Consensus 163 Q~i~~E----~~g~w---------~~~~V~~vD~SLv~v~f~ 191 (213)
T 3dlm_A 163 QLIKTE----WEGTW---------WKSRVEEVDGSLVRILFL 191 (213)
T ss_dssp CEEEEE----ETTEE---------EEEEEEEEETTEEEEEET
T ss_pred CEEEEE----ecCcE---------EEEEEEEEcceeEEEEEc
Confidence 998874 33333 468999999999998643
No 67
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=57.35 E-value=18 Score=29.85 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=33.0
Q ss_pred CcccCCCcEEEecCCCCCCCCCCCCceEEEEeecCCCCEEEEEceec
Q 004854 328 SHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAK 374 (727)
Q Consensus 328 ~~Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~ 374 (727)
...|..||+|+-.=.+. ----|.|++||-...+|.|++++.
T Consensus 11 ~~~f~vGddVLA~wtDG------l~Y~gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 11 ACKFEEGQDVLARWSDG------LFYLGTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp CCCSCTTCEEEEECTTS------CEEEEEEEEEETTTTEEEEEETTT
T ss_pred cccccCCCEEEEEEccC------cEEEeEEEEEccCCcEEEEEEccC
Confidence 45799999999765543 244699999999999999998764
No 68
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=53.00 E-value=19 Score=28.93 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=33.2
Q ss_pred cccCCCcEEEecCCCCCCCCCCCCceEEEEeecCCCCEEEEEceec
Q 004854 329 HEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAK 374 (727)
Q Consensus 329 ~Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~ 374 (727)
..|++||.|+-+-.++ .=-.|.|+.||.....|-|++.+.
T Consensus 2 ~~f~~GedVLarwsDG------~fYlGtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 2 PRLWEGQDVLARWTDG------LLYLGTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp CSCCTTCEEEEECTTS------CEEEEEEEEEETTTTEEEEEETTS
T ss_pred CccccCCEEEEEecCC------CEEeEEEEEEecCCCEEEEEEcCC
Confidence 4799999999887664 234699999999999999998764
No 69
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=43.95 E-value=1.9e+02 Score=26.33 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=59.1
Q ss_pred ccccCCCee-eecCCCCCCeEEEEEEeEE--EEEEecCCeeeeCCCccccccCC-----CcCCCCEEEeC---------C
Q 004854 56 RGFTHGDIV-RSVTDPSGQMGRVININML--VDLEGIPGYIIKDVNSKNILKIR-----SISVGDFVVLG---------A 118 (727)
Q Consensus 56 R~~~~GDvV-r~~~d~~gQ~G~V~~V~~~--vdL~~~~g~vi~~V~s~~L~~i~-----~f~~GDyVv~g---------~ 118 (727)
+.+-.|+.| ++..+.---.|.|+++... +.+...+|....|..++++.... +-.+|..|-.- -
T Consensus 4 ~~v~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~y~a~ 83 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAK 83 (118)
T ss_dssp SCCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEEEEE
T ss_pred ceeccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCCCccCCCCHhhcccccccccCCCCCCCEEEEEcCCCCEeeeE
Confidence 456779999 4544443358999998875 44444588887777777777655 44455555432 2
Q ss_pred eeeEEEEEEeeEEEEeCCCCeEEEcccCcccc
Q 004854 119 WLGRVDKVIDSVNIVLDDGSKYEVTAVDHEKL 150 (727)
Q Consensus 119 WlG~V~~V~~~v~v~~~dGs~c~v~~~d~~~L 150 (727)
-+|+. ....-+|.|.||+...+...+-..|
T Consensus 84 f~g~~--~~~~Y~V~feDgs~~~~kR~~iyt~ 113 (118)
T 2qqr_A 84 FVASH--PIQMYQVEFEDGSQLVVKRDDVYTL 113 (118)
T ss_dssp EEEEE--EEEEEEEEETTSCEEEECGGGEEET
T ss_pred Eecee--EEEEEEEEECCCCEEEEcHHHeecc
Confidence 33332 3455679999999766655554443
No 70
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=43.75 E-value=15 Score=37.86 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=37.4
Q ss_pred EEeeccccCCCeeeecCCCCCCeEEEEEEeEE-EEEEecCCeeeeCCCccccccCCCcC
Q 004854 52 LSFDRGFTHGDIVRSVTDPSGQMGRVININML-VDLEGIPGYIIKDVNSKNILKIRSIS 109 (727)
Q Consensus 52 ~L~DR~~~~GDvVr~~~d~~gQ~G~V~~V~~~-vdL~~~~g~vi~~V~s~~L~~i~~f~ 109 (727)
.+++|.|..||.|.- .|..|+|.+++.+ ..|+..+|..+. ||-..|.++.-++
T Consensus 123 i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~T~i~t~d~~~v~-iPN~~l~~i~N~s 176 (285)
T 3udc_A 123 IIFEDQFSVGDYVTI----NGISGTVEEIGLRVTKIRGFSDGLHI-IPNGEIKMVTNLT 176 (285)
T ss_dssp HHHTTSCCTTCEEEE----TTEEEEEEEECSSEEEEEETTTEEEE-EEGGGCSCEEECS
T ss_pred HHhhCCccCCCEEEE----CCEEEEEEEeeeeEEEEecCCCCEEE-ecccccccccccC
Confidence 368999999999976 2579999999995 666777776544 3444454444343
No 71
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=43.40 E-value=55 Score=27.92 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=29.3
Q ss_pred CeeeEEEEEEe--eEEEEeCCCCeEEEcccCccccccCCCCCCCCCCCCcCCCceeEee
Q 004854 118 AWLGRVDKVID--SVNIVLDDGSKYEVTAVDHEKLLPISPSLLEDSQYPYYPGQRVKVR 174 (727)
Q Consensus 118 ~WlG~V~~V~~--~v~v~~~dGs~c~v~~~d~~~L~~~~~~~~~d~~~~~yPGQ~V~~~ 174 (727)
.=+|.|.++.+ .++|+.++|.++.|.... .+ | .--+-||+||...
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~---------~V--d-~~~LkpG~rVaLn 65 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSH---------FV--N-PDDLAPGKRVCLN 65 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCT---------TS--C-GGGCCTTCEEEEC
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecC---------cc--C-HHHCCCCCEEEEC
Confidence 35799999876 578888999987665321 11 0 1134578888765
No 72
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=41.71 E-value=47 Score=32.60 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeE
Q 004854 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSF 725 (727)
Q Consensus 661 kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~ 725 (727)
++|.+|+..|.=+. +...+..+...++.+..-. |....+.|.++.+||.+||.+.
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~ 58 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYF 58 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeE
Confidence 47888999884332 2223557888898888544 6889999999999999999875
No 73
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=39.24 E-value=34 Score=32.68 Aligned_cols=66 Identities=5% Similarity=-0.016 Sum_probs=31.4
Q ss_pred EeCCCceeeCcCCCceeecccCCCcccCCCcEEEecCCCCCCCCCCCCceEEEEeecC---CCCEEEEEceecC
Q 004854 305 VWQDGSCSVGLDSQALLPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDA---KERTVTVQWRAKA 375 (727)
Q Consensus 305 ~WQDGt~~~~i~st~L~P~~~~d~~Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~---~eRta~V~W~~~~ 375 (727)
+||+.-...+ .....+.--..|+..|-.||+|+-+..+.. .+..+|.|..+-. .+.-++|+||-.+
T Consensus 2 ~~~g~~~~~~-~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~----~~p~I~rI~~i~~~~~g~~~v~v~WfyRP 70 (174)
T 1w4s_A 2 MSSGSAGLSS-LHRTYSQDCSFKNSMYHVGDYVYVEPAEAN----LQPHIVCIERLWEDSAGEKWLYGCWFYRP 70 (174)
T ss_dssp -------------------------CCCTTCEEEECCSSTT----SCCEEEEEEEEEECTTCCEEEEEEEEECG
T ss_pred CccCCccccC-CCcEEeEEEEECCEEEECCCEEEEeCCCCC----CCCEEEEEEEEEEcCCCCEEEEEEEecCH
Confidence 5774322222 223344434578899999999999866421 2356888887633 4678999999875
No 74
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=38.56 E-value=64 Score=25.75 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=41.7
Q ss_pred CcccCCCcEEEecCCCCCCCCCCCCce--EEEEeecCCCCEEEEEceecCCCCCCCCceeeeeeecccC
Q 004854 328 SHEFWPDQFVLEKGISDDPHIPSGQRW--GVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEH 394 (727)
Q Consensus 328 ~~Ef~PGd~V~~k~~~~~~~~~~~~~~--GVVqsvd~~eRta~V~W~~~~~~~~~~~~e~VSvYel~~h 394 (727)
.+.+=+||.++-+=..+ .+| ++|++++....++.|++..- +..|.|+.=+|.+-
T Consensus 6 ~~~~~vGd~c~A~~s~D-------g~wYrA~I~~v~~~~~~~~V~fvdY------Gn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSED-------GQCYEAEIEEIDEENGTAAITFAGY------GNAEVTPLLNLKPV 61 (64)
T ss_dssp SSCCCTTCEEEEECTTT-------SSEEEEEEEEEETTTTEEEEEETTT------TEEEEEEGGGEECC
T ss_pred CCCCCCCCEEEEEECCC-------CCEEEEEEEEEcCCCCEEEEEEEec------CCEEEEeHHHcEeC
Confidence 35677999999885432 334 89999998778999999876 47888888877653
No 75
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=38.50 E-value=30 Score=33.32 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=30.7
Q ss_pred CcccCCCcEEEecCCCCCCCCCCCCceEEEEee------cCCCCEEEEEceecC
Q 004854 328 SHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGV------DAKERTVTVQWRAKA 375 (727)
Q Consensus 328 ~~Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsv------d~~eRta~V~W~~~~ 375 (727)
..-.-.||||+=++.+++ ..-+|-|+.. +.....|.||||-.+
T Consensus 36 ~~~i~vGd~VLI~~~D~~-----~PyVAki~~lye~~~e~~~~k~A~VQWy~R~ 84 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDNK-----KPYVAKLIELFQNGAEVPPKKCARVQWFVRF 84 (163)
T ss_dssp EEEEETTCEEEECCSSSS-----CCEEEEEEEEEEETTSSSCEEEEEEEEEEEG
T ss_pred CeEEeeCCEEEEeCCccc-----CChhHHHHHHHhccccCCCceEEEEEeeech
Confidence 455678999998877652 2367877776 334567999999764
No 76
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=35.27 E-value=2.6e+02 Score=25.53 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=58.9
Q ss_pred ccccCCCee-eecCCCCCCeEEEEEEeEE--EEEEecCCeeeeCCCccccccCC-----CcCCCCEEEeCCeeeEEEE--
Q 004854 56 RGFTHGDIV-RSVTDPSGQMGRVININML--VDLEGIPGYIIKDVNSKNILKIR-----SISVGDFVVLGAWLGRVDK-- 125 (727)
Q Consensus 56 R~~~~GDvV-r~~~d~~gQ~G~V~~V~~~--vdL~~~~g~vi~~V~s~~L~~i~-----~f~~GDyVv~g~WlG~V~~-- 125 (727)
+.+-.|+.| ++..+.---.|.|+.+... +.+...+|.--.|..++++.... +-.+|..|-.-.==|.+.+
T Consensus 5 ~~v~vGq~V~ak~~ngryy~~~V~~~~~~~~y~V~F~DgS~s~dl~PedIvs~dc~~~GpP~~G~~V~V~W~DG~~y~a~ 84 (123)
T 2xdp_A 5 KVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLYGAK 84 (123)
T ss_dssp CCCCTTCCCCCCCCCCCCCCCEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEEEEE
T ss_pred cccccCCEEEEECCCCcEEeEEEEEEeeEEEEEEEcCCCCccCCCCHhHcccccccccCCCCCCCEEEEEcCCCCEEeEE
Confidence 456679999 4444443467899999885 44445588777776666665444 3445655543211133322
Q ss_pred -----EEeeEEEEeCCCCeEEEcccCccccc
Q 004854 126 -----VIDSVNIVLDDGSKYEVTAVDHEKLL 151 (727)
Q Consensus 126 -----V~~~v~v~~~dGs~c~v~~~d~~~L~ 151 (727)
....-+|.|.||+...+...+-..|.
T Consensus 85 f~g~~~~~~YtV~FeDgs~~~~kR~~iyt~~ 115 (123)
T 2xdp_A 85 YFGSNIAHMYQVEFEDGSQIAMKREDIYTLD 115 (123)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEGGGCCCSS
T ss_pred EeeeeeEEEEEEEECCCCeEEecHHHccccc
Confidence 23445699999997777666655553
No 77
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=34.46 E-value=57 Score=24.97 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCCcEEEecCCCCCCCCCCCCce--EEEEeecCCCCEEEEEceecCCCCCCCCceeeeeeeccc
Q 004854 332 WPDQFVLEKGISDDPHIPSGQRW--GVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVE 393 (727)
Q Consensus 332 ~PGd~V~~k~~~~~~~~~~~~~~--GVVqsvd~~eRta~V~W~~~~~~~~~~~~e~VSvYel~~ 393 (727)
=+||.++-+=..+ ..| |+|++++....++.|.+..- +..|+|++=+|.+
T Consensus 3 k~G~~c~A~~s~D-------g~wYrA~I~~i~~~~~~~~V~fvDY------Gn~e~v~~~~lrp 53 (54)
T 3s6w_A 3 KPGDECFALYWED-------NKFYRAEVEALHSSGMTAVVKFIDY------GNYEEVLLSNIKP 53 (54)
T ss_dssp CTTCEEEEEETTT-------TEEEEEEEEEC--CCSEEEEEETTT------CCEEEEEGGGEEC
T ss_pred CCCCEEEEEECCC-------CCEEEEEEEEEeCCCCEEEEEEEcc------CCeEEEeHHHEEE
Confidence 3788888775332 345 89999998889999998765 5788888776653
No 78
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=32.86 E-value=55 Score=30.59 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred EEEEEeCCCceeeCcCCCceeecccCCCcccCCCcEEE--ecCCCCCCCCCCCCceEEEEeecCCCCEEEEEceecCC
Q 004854 301 KFDVVWQDGSCSVGLDSQALLPVNVVNSHEFWPDQFVL--EKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKAN 376 (727)
Q Consensus 301 ~vdV~WQDGt~~~~i~st~L~P~~~~d~~Ef~PGd~V~--~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~~~ 376 (727)
.-.|.|++-+...+ .++ --|+ |++++.. .. .+ +.+.||+.-.|+.|.+.|+.+|+..++
T Consensus 41 ~~~V~~~G~~Ylvg----~~C-----kpHD-C~~~rl~Vlfs-~d------~~~a~Gl~v~v~~k~~~a~~~WLG~Pd 101 (136)
T 1xs0_A 41 AQTVTLGDETYQVM----SAC-----KPHD-CGSQRIAVMWS-EK------SNQMTGLFSTIDEKTSQEKLTWLNVND 101 (136)
T ss_dssp EEEEEEETEEEEEE----EEE-----CTTC-TTTEEEEEEEC-TT------TCCEEEEEEEECTTTCCEEEEEECSSC
T ss_pred CeeEEECCEEEEEE----ccc-----CCCC-CccCeEEEEEC-CC------cCeEEEEEEECCCCCceeeeEecCCCC
Confidence 34566666665554 233 2455 6666543 33 22 257899999999999999999998863
No 79
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=31.93 E-value=70 Score=28.46 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=29.4
Q ss_pred CeeeEEEEEEe--eEEEEeCCCCeEEEcccCccccccCCCCCCCCCCCCcCCCceeEee
Q 004854 118 AWLGRVDKVID--SVNIVLDDGSKYEVTAVDHEKLLPISPSLLEDSQYPYYPGQRVKVR 174 (727)
Q Consensus 118 ~WlG~V~~V~~--~v~v~~~dGs~c~v~~~d~~~L~~~~~~~~~d~~~~~yPGQ~V~~~ 174 (727)
.=+|+|.++.+ .++|..++|+.+.|.. .+.+- .--+-||+||...
T Consensus 38 ~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v---------~~~Vd---~~~LkpG~rVaLn 84 (109)
T 2wg5_A 38 LLVGVVSDILEDGRVVVKSSTGPKFVVNT---------SQYIN---EEELKPGARVALN 84 (109)
T ss_dssp EEEEEEEEECTTSCEEEEETTSCEEEECB---------CTTSC---TTTCCTTCEEEEE
T ss_pred ceEEEEEEEecCCEEEEEeCCCCEEEEEc---------ccccC---HHHCCCCCEEEEC
Confidence 34788888887 4888888888766642 22221 1236689998765
No 80
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=30.85 E-value=1.1e+02 Score=23.92 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=41.2
Q ss_pred cccCCCcEEEecCCCCCCCCCCCCce-EEEEeecCCCCEEEEEceecCCCCCCCCceeeeeeecccCC
Q 004854 329 HEFWPDQFVLEKGISDDPHIPSGQRW-GVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEHP 395 (727)
Q Consensus 329 ~Ef~PGd~V~~k~~~~~~~~~~~~~~-GVVqsvd~~eRta~V~W~~~~~~~~~~~~e~VSvYel~~hp 395 (727)
+.|=+||.++-+=..+ ..-| |+|++++....++.|+...- +..|+|++=+|..-|
T Consensus 2 ~~~~~G~~c~A~~s~D------g~wYrA~I~~i~~~~~~~~V~f~DY------Gn~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSED------GCIYPATIASIDFKRETCVVVYTGY------GNREEQNLSDLLSPI 57 (59)
T ss_dssp CCCCTTCEEEEECTTT------SCEEEEEEEEEETTTTEEEEEETTT------TEEEEEEGGGCBCTT
T ss_pred CcCCcCCEEEEEECCC------CCEEEEEEEEEcCCCCEEEEEEEcC------CCEEEEcHHHeeCCC
Confidence 4577899999875432 2333 79999988788999998764 578889888877643
No 81
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.65 E-value=31 Score=35.61 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=30.3
Q ss_pred EEeeccccCCCeeeecCCCCCCeEEEEEEeEE-EEEEecCCee
Q 004854 52 LSFDRGFTHGDIVRSVTDPSGQMGRVININML-VDLEGIPGYI 93 (727)
Q Consensus 52 ~L~DR~~~~GDvVr~~~d~~gQ~G~V~~V~~~-vdL~~~~g~v 93 (727)
.+++|.|..||.|.-. |..|+|.+++.. ..|+..+|.+
T Consensus 124 i~~~~pf~vGD~I~i~----g~~G~V~~I~l~~T~i~t~dg~~ 162 (286)
T 2vv5_A 124 LVMFRPFRAGEYVDLG----GVAGTVLSVQIFSTTMRTADGKI 162 (286)
T ss_dssp HHTTCSSCTTCEEESS----SCEEEEEEECSSEEEEECTTSCE
T ss_pred HHhcCCccCCCEEEEC----CEEEEEEEEEeEEEEEEeCCCCE
Confidence 4789999999999743 589999999995 5566667754
No 82
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=29.80 E-value=28 Score=32.17 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred eEEEEeecCCCCEEEEEceecC
Q 004854 354 WGVVQGVDAKERTVTVQWRAKA 375 (727)
Q Consensus 354 ~GVVqsvd~~eRta~V~W~~~~ 375 (727)
.+||.||+.++|+|+|.....+
T Consensus 22 PAVVKSV~r~ekkA~VL~Ie~~ 43 (134)
T 3pmi_A 22 PAVVKSVRQRDKKASVLYIEGH 43 (134)
T ss_dssp EEEEEEEEGGGTEEEEEECCSS
T ss_pred chheeeeeeccceEEEEEEeCC
Confidence 4799999999999999998764
No 83
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=29.61 E-value=85 Score=24.33 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=30.1
Q ss_pred cccCCCeeeecCCC-CCCeEEEEEEeE---EEEE--EecCCeeeeCCCcccc
Q 004854 57 GFTHGDIVRSVTDP-SGQMGRVININM---LVDL--EGIPGYIIKDVNSKNI 102 (727)
Q Consensus 57 ~~~~GDvVr~~~d~-~gQ~G~V~~V~~---~vdL--~~~~g~vi~~V~s~~L 102 (727)
.|..||.|+=.+.| .|+.|+|..++- .+.+ ...+.+.--.++...+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~v 55 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQV 55 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHE
Confidence 46789999987766 789999999964 3443 3344443334554444
No 84
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.89 E-value=76 Score=26.14 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.5
Q ss_pred cccCCCcEEEecCCCCCCCCCCCCceEEEEeecCCCCEEEEEceec
Q 004854 329 HEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAK 374 (727)
Q Consensus 329 ~Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~ 374 (727)
-.|++||.|+-.-.+. -=-.|.|+.||-....|-|++.+.
T Consensus 8 ~~f~eGqdVLarWsDG------lfYlGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDG------LLYLGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp CCCCTTCEEEEECTTS------SEEEEEEEEEETTTTEEEEEETTT
T ss_pred cccccCCEEEEEecCC------cEEEeEEEEEecCCcEEEEEEccC
Confidence 4799999999766653 345699999999999999997654
No 85
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=27.46 E-value=1e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=41.4
Q ss_pred cccCCCcEEEecCCCCCCCCCCCCce--EEEEeecCCCCEEEEEceecCCCCCCCCceeeeeeecccCC
Q 004854 329 HEFWPDQFVLEKGISDDPHIPSGQRW--GVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEHP 395 (727)
Q Consensus 329 ~Ef~PGd~V~~k~~~~~~~~~~~~~~--GVVqsvd~~eRta~V~W~~~~~~~~~~~~e~VSvYel~~hp 395 (727)
+.+=+||.++-+=..+ ..| |+|++++....++.|.+..- +..|+|++=+|..-|
T Consensus 16 ~~~kvGd~C~A~ys~D-------g~wYRA~I~~i~~~~~~~~V~fvDY------GN~e~V~~~~Lr~l~ 71 (77)
T 3pnw_C 16 KMWKPGDECFALYWED-------NKFYRAEVEALHSSGMTAVVKFIDY------GNYEEVLLSNIKPIQ 71 (77)
T ss_dssp TTCCTTCEEEEEETTT-------TEEEEEEEEEECTTSSEEEEEETTT------CCEEEEEGGGEECC-
T ss_pred CCCCcCCEEEEEECCC-------CCEEEEEEEEEeCCCCEEEEEEEcC------CCeEEEeHHHeEECC
Confidence 4577899999885432 345 89999998889999997765 578888888877654
No 86
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=25.05 E-value=2.2e+02 Score=23.49 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=32.2
Q ss_pred CCeeEEEeeecCCcEEEEEcCCCeeEeecceeeeee
Q 004854 439 SSCIGIVTGFKDGAVEVRWATGFTTKVGPNEIYGVE 474 (727)
Q Consensus 439 ls~vG~V~~~~dG~v~V~W~dg~~s~v~p~~l~~v~ 474 (727)
+=..|.|++...+.+.|+..|.+..-|.+.+|..+.
T Consensus 30 ~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 30 RFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CEEEEEEEEECSSCEEEEETTCCEEEECTTTEECSS
T ss_pred CEEEEEEEecCCceEEEEecCCcceeeeHHHHHhhc
Confidence 568899988889999999999999999999998883
No 87
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=24.61 E-value=2.3e+02 Score=22.44 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=38.5
Q ss_pred CCCccccCcEEEEeccCCccccccccccCCCCCCcCCCCCCCCCCCee-EEEeeec--CCcEEEEEcC-CCeeEeeccee
Q 004854 395 PDYSYCYGDVVFKLVQNQFGMCKDAALEGTISDWEQNDCPDTHYSSCI-GIVTGFK--DGAVEVRWAT-GFTTKVGPNEI 470 (727)
Q Consensus 395 pd~~~~~GD~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~v-G~V~~~~--dG~v~V~W~d-g~~s~v~p~~l 470 (727)
|.+.++.||.++=.-. .+..|+ +.|+.+. ++.++|.+.| |.+.+|...+|
T Consensus 5 ~~~~~~vGd~c~A~~s--------------------------~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~L 58 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWS--------------------------EDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNL 58 (64)
T ss_dssp CSSCCCTTCEEEEECT--------------------------TTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGE
T ss_pred cCCCCCCCCEEEEEEC--------------------------CCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHc
Confidence 6688899998862211 123466 7788874 5899999999 78888877777
Q ss_pred eee
Q 004854 471 YGV 473 (727)
Q Consensus 471 ~~v 473 (727)
..|
T Consensus 59 rpl 61 (64)
T 4a4f_A 59 KPV 61 (64)
T ss_dssp ECC
T ss_pred EeC
Confidence 665
No 88
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=21.44 E-value=99 Score=27.89 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=35.9
Q ss_pred CeEEEEEEeE--EEEEEecCCeeeeCCCccccccCCCcCCCCEEEeCCe-----eeEEEE
Q 004854 73 QMGRVININM--LVDLEGIPGYIIKDVNSKNILKIRSISVGDFVVLGAW-----LGRVDK 125 (727)
Q Consensus 73 Q~G~V~~V~~--~vdL~~~~g~vi~~V~s~~L~~i~~f~~GDyVv~g~W-----lG~V~~ 125 (727)
+.|+|+..-- ...++..+|.++.-.-+-.+++---+.+||+|....| -|+|..
T Consensus 34 ~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~ 93 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIIL 93 (117)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEE
Confidence 4688888766 6777767787766655555664334459999997766 455544
No 89
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=97 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=33.6
Q ss_pred CCcccCCCcEEEecCCCCCCCCCCCCceEEEEeecCCCCEEEEEceec
Q 004854 327 NSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAK 374 (727)
Q Consensus 327 d~~Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~ 374 (727)
+...|+.||.|+-.-.+. -=-.|.|+.||-..+.|-|++.+.
T Consensus 4 g~~~f~eGqdVLarWsDG------lfYlgtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRWTDG------LYYLGKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp SCCCCCTTCEEEEECTTS------CEEEEEECCCCSTTSEEEEEETTS
T ss_pred CccceecCCEEEEEecCC------CEEEEEEEEEecCCCEEEEEEccC
Confidence 345799999999775553 345699999999999999997754
No 90
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=21.04 E-value=91 Score=26.91 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=20.4
Q ss_pred CCeeEEEeee-cCCcEEEEEcCCCee
Q 004854 439 SSCIGIVTGF-KDGAVEVRWATGFTT 463 (727)
Q Consensus 439 ls~vG~V~~~-~dG~v~V~W~dg~~s 463 (727)
..-+|.|++. .+|-|.|+|.+|...
T Consensus 37 ~G~~GtV~~~~~~~wv~V~Wd~G~~n 62 (86)
T 2dk3_A 37 PQGEGTVTGELHNGWIDVTWDAGGSN 62 (86)
T ss_dssp SCCCEEBCSCCCSSEEEEEETTTEEE
T ss_pred CCcceEEEEEcCCCEEEEEeCCCCee
Confidence 3578999886 499999999999554
No 91
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=20.94 E-value=1.9e+02 Score=23.92 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=42.0
Q ss_pred cccCCCcEEEecCCCCCCCCCCCCce-EEEEeecCCCCEEEEEceecCCCCCCCCceeeeeeecccCC
Q 004854 329 HEFWPDQFVLEKGISDDPHIPSGQRW-GVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEHP 395 (727)
Q Consensus 329 ~Ef~PGd~V~~k~~~~~~~~~~~~~~-GVVqsvd~~eRta~V~W~~~~~~~~~~~~e~VSvYel~~hp 395 (727)
+.+-+|+.++-+-..+ .+-| ++|++++....++.|+...- +..|+|.+-+|..-|
T Consensus 8 ~~~~~G~~c~A~~s~D------g~wYRA~I~~i~~~~~~~~V~fiDY------GN~e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 8 KVWKPGDECFALYWED------NKFYRAEVEALHSSGMTAVVKFTDY------GNYEEVLLSNIKPVQ 63 (78)
T ss_dssp CCCCTTCEEEEECTTT------CCEEEEEEEEECSSSSEEEEEETTT------TEEEEEEGGGEEECC
T ss_pred cCCCcCCEEEEEECCC------CCEEEEEEEEEeCCCCEEEEEEEcC------CCeEEEcHHHeEeCC
Confidence 5678999999886532 2333 79999988789999999765 578889888877654
No 92
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=20.46 E-value=1e+02 Score=31.62 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=31.0
Q ss_pred cCCCcCCCCEEEeCCeeeEEEEEEeeEEE-EeCCCCeEEE
Q 004854 104 KIRSISVGDFVVLGAWLGRVDKVIDSVNI-VLDDGSKYEV 142 (727)
Q Consensus 104 ~i~~f~~GDyVv~g~WlG~V~~V~~~v~v-~~~dGs~c~v 142 (727)
--++|.+||+|..+.--|+|+++--..+. +..||...-|
T Consensus 126 ~~~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~dg~~v~I 165 (286)
T 2vv5_A 126 MFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVI 165 (286)
T ss_dssp TTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEE
T ss_pred hcCCccCCCEEEECCEEEEEEEEEeEEEEEEeCCCCEEEe
Confidence 35799999999999999999999766554 5567776544
Done!