BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004855
(727 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 221 ARSWRYGTGWLRSVIADYGV----PLMVVVWTGVSYIPSGDVPKGIPRRL 266
+ +W + WLR I G PL++VV T ++ P +P+ IPR++
Sbjct: 197 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKV 246
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 221 ARSWRYGTGWLRSVIADYGV----PLMVVVWTGVSYIPSGDVPKGIPRRL 266
+ +W + WLR I G PL++VV T ++ P +P+ IPR++
Sbjct: 196 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKV 245
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 221 ARSWRYGTGWLRSVIADYGV----PLMVVVWTGVSYIPSGDVPKGIPRRL 266
+ +W + WLR I G PL++VV T ++ P +P+ IPR++
Sbjct: 199 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKV 248
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 221 ARSWRYGTGWLRSVIADYGV----PLMVVVWTGVSYIPSGDVPKGIPRRL 266
+ +W + WLR I G PL++VV T ++ P +P+ IPR++
Sbjct: 189 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKV 238
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 221 ARSWRYGTGWLRSVIADYGV----PLMVVVWTGVSYIPSGDVPKGIPRRL 266
+ +W + WLR I G PL++VV T ++ P +P+ IPR++
Sbjct: 207 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKV 256
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 221 ARSWRYGTGWLRSVIADYGV----PLMVVVWTGVSYIPSGDVPKGIPRRL 266
+ +W + WLR I G PL++VV T ++ P +P+ IPR++
Sbjct: 207 SETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKV 256
>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase
Length = 540
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 476 PVEVKEQRLSNLLQAIMVGGCVAAMPFLKMIPTSVLWGYFAFMAIESLPG----NQFWER 531
PVE++ L + +A + GG A+ ++ P W ++ I +LPG NQF+
Sbjct: 399 PVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTPYANQFYRE 458
Query: 532 I 532
I
Sbjct: 459 I 459
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,831,256
Number of Sequences: 62578
Number of extensions: 772028
Number of successful extensions: 1485
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 7
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)