Query 004855
Match_columns 727
No_of_seqs 180 out of 618
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bzk_A Protein (BAND 3 anion t 99.7 4E-19 1.4E-23 137.2 -0.6 43 17-61 1-43 (43)
2 1bnx_A Protein (BAND 3); human 99.5 4.7E-15 1.6E-19 109.1 1.0 34 17-61 1-34 (34)
3 1bts_A BAND 3 anion transport 98.6 1.4E-08 4.7E-13 70.7 2.4 26 66-91 1-26 (26)
4 1btq_A BAND 3 anion transport 98.6 6.3E-09 2.2E-13 72.3 0.7 26 35-60 1-26 (26)
5 1bh7_A BAND 3; membrane protei 98.5 2.7E-09 9.2E-14 78.1 -2.6 33 526-564 1-33 (33)
6 3qe7_A Uracil permease; uracil 98.4 5.3E-06 1.8E-10 91.3 18.7 256 40-356 25-287 (429)
7 2xov_A Rhomboid protease GLPG; 22.5 1.8E+02 0.006 27.6 7.0 61 42-104 59-119 (181)
8 1qle_D Cytochrome AA3, ccytoch 20.0 92 0.0031 23.9 3.5 25 120-144 19-43 (43)
9 3qe7_A Uracil permease; uracil 19.2 7.2E+02 0.025 26.9 11.8 106 51-177 246-355 (429)
10 1m56_D Cytochrome C oxidase; m 14.9 1.4E+02 0.0049 23.6 3.6 25 120-144 27-51 (51)
No 1
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.71 E-value=4e-19 Score=137.17 Aligned_cols=43 Identities=35% Similarity=0.601 Sum_probs=40.5
Q ss_pred hccccccccccccccccceeechhHHHHHhhhhhHHHHhhccchh
Q 004855 17 GRLMCYKQDWTSGFKAGFRILAPTTYIFFASAIPVISFGEQLERD 61 (727)
Q Consensus 17 rR~p~Y~SDwtDg~~~~~~vlast~fifFA~llPaIaFG~ll~~~ 61 (727)
||+|||+|||+||+| +||+++++||||||++|+||||++|+++
T Consensus 1 rR~p~Y~SD~~dg~~--~~~laa~~fiyFa~l~PaIaFG~ll~~~ 43 (43)
T 1bzk_A 1 XRYPYYLSDITDAFS--PQVLAAVIFIYFAALSPAITFGGLLGEK 43 (43)
T ss_dssp -CCSTTHHHHTTSSC--SHHHHHHHHHHHHTSTTTTTSSCCCCCC
T ss_pred CCCcccHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 799999999999999 7999999999999999999999999874
No 2
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.48 E-value=4.7e-15 Score=109.05 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=31.5
Q ss_pred hccccccccccccccccceeechhHHHHHhhhhhHHHHhhccchh
Q 004855 17 GRLMCYKQDWTSGFKAGFRILAPTTYIFFASAIPVISFGEQLERD 61 (727)
Q Consensus 17 rR~p~Y~SDwtDg~~~~~~vlast~fifFA~llPaIaFG~ll~~~ 61 (727)
||+|||+|||+| ++||||||++|+||||++|+++
T Consensus 1 rR~p~Y~SD~~d-----------~~fiyFa~l~PaIaFg~ll~~~ 34 (34)
T 1bnx_A 1 XRYPYYLSDITD-----------VIFIYFAALSPAITFGGLLGEK 34 (34)
T ss_dssp -CCSTTTHHHHH-----------HHHHHHHHHHHHHHSSCSSCCC
T ss_pred CCCcccHHHHHH-----------HHHHHHHHHHHHHHHHHHHccC
Confidence 799999999999 9999999999999999999873
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=98.61 E-value=1.4e-08 Score=70.69 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.7
Q ss_pred chhHHHHHhhhhhhHHHHhhcCccee
Q 004855 66 LTAVQTLASTALCGIIHSIIGGQPLL 91 (727)
Q Consensus 66 lgv~E~LlStai~GiifslfgGQPL~ 91 (727)
+||.|+++|+++||++|++||||||+
T Consensus 1 ~gv~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 1 XGVSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTC----
T ss_pred CchhHHHHHHHHHHHHHHHHhcccCC
Confidence 58999999999999999999999985
No 4
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=98.61 E-value=6.3e-09 Score=72.29 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=24.4
Q ss_pred eeechhHHHHHhhhhhHHHHhhccch
Q 004855 35 RILAPTTYIFFASAIPVISFGEQLER 60 (727)
Q Consensus 35 ~vlast~fifFA~llPaIaFG~ll~~ 60 (727)
||+++++||||||++|+||||++|++
T Consensus 1 q~laa~~FlyFa~l~paIaFGgLl~~ 26 (26)
T 1btq_A 1 XVLAAVIFIYFAALSPAITFGXXXXX 26 (26)
T ss_pred ChHHHHHHHHHHHHcchhccccccCC
Confidence 68999999999999999999999874
No 5
>1bh7_A BAND 3; membrane protein, cytoplasmic loop, anion exchange protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.55 E-value=2.7e-09 Score=78.09 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=28.1
Q ss_pred chHHHHHHHhhcCCCCccccccccccccccccCccchhh
Q 004855 526 NQFWERILLLFTAPSRRYKVLEEYHATFVETVPFKTIAM 564 (727)
Q Consensus 526 nQf~eRilLLf~~p~~~y~~l~~~~~~yvr~Vp~~~Ihl 564 (727)
+|||||++|+|||+|++ |+.+|+|+||++|||+
T Consensus 1 iQ~~~Ri~L~fmp~k~~------P~~~Yvr~Vp~~r~Hl 33 (33)
T 1bh7_A 1 IQLFDRILLLFKPPKYH------PDVPYVKRVKTWRMHL 33 (33)
T ss_dssp CCCTTTTCC-CCCSSCC------CC-CCCCTTHHHHHTC
T ss_pred CcHHHHHHHHcCCcccC------CCCceEEEcceeeeeC
Confidence 59999999999999863 6789999999999995
No 6
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=98.44 E-value=5.3e-06 Score=91.29 Aligned_cols=256 Identities=14% Similarity=0.102 Sum_probs=140.5
Q ss_pred hHHHHHhhhhhHHHHhhccchhccCcchhHHHHHhhhhhhHHHHhhcCcceee-eccCchHHHHHHHHHHHHHhhhcccc
Q 004855 40 TTYIFFASAIPVISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLI-LGVAEPTVIMYTFMFNFAKERADLGR 118 (727)
Q Consensus 40 t~fifFA~llPaIaFG~ll~~~T~g~lgv~E~LlStai~GiifslfgGQPL~I-lGvTGP~~if~~~ly~f~~~~~~lg~ 118 (727)
.+-||-+.+++-+..|. +...++++++++.+++++++|-|+-+ .|++...+ ..+....+ ++.
T Consensus 25 ~lam~~~~v~~PlilGl----------~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi---~~~~~i~~-~g~--- 87 (429)
T 3qe7_A 25 LFAMFGATVLVPVLFHI----------NPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFI---SPVLLLLP-LGY--- 87 (429)
T ss_dssp HHHHHHHHHHHHHTTTS----------CHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGH---HHHHHHGG-GCH---
T ss_pred HHHHHHHHHHhHHHhCC----------CHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHH---HHHHHHHh-cCH---
Confidence 34456566555444442 23479999999999999999999886 88775532 22332322 221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHh--ccc--ccceecccchhhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccccccc
Q 004855 119 NLFIAWSGWVCVWTALLLLMLSIL--GAC--SIINRFTRVAGELFGLLIAMLFMQQAIKGLVEEFRIPERENPKLVQFIP 194 (727)
Q Consensus 119 ~~fL~~~~WVgiWta~~l~llai~--nas--~li~~~TRft~EiFg~LIsvIFI~eaik~lv~~F~~p~~~~~~~~~~~~ 194 (727)
+-..=..+.++++.++++.+ ... .+.|+++.-.--.|-++|++..+--+++... ... +. . .+ .
T Consensus 88 ----~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~----~~~--~~-~-~~-~ 154 (429)
T 3qe7_A 88 ----EVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG----LLP--AE-G-QT-P 154 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHT----SSC--BT-T-BC-C
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhcc----ccC--CC-C-cc-c
Confidence 11123677888888888887 543 6788888655555556666655555554321 000 00 0 00 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccccccccccchhhcchhhhHHHHHHhhhccccCc-ccCCCCccccCCCCCCC
Q 004855 195 SWRFANGMFALVLSFGLLYTGLKSRKARSWRYGTGWLRSVIADYGVPLMVVVWTGVSYIPSG-DVPKGIPRRLFSPNPWS 273 (727)
Q Consensus 195 ~~~~~~~llsliL~~gt~~~a~~lr~~r~s~y~~~~vR~~IaDygvpiaVlv~t~vsy~~~~-~vP~g~~~rl~~p~p~~ 273 (727)
....+.+++.++.+.+.+.+ + .|+++.-+++.+++++.+.+++..+. +.+. +. ..||-
T Consensus 155 ------~~~~~~la~~tl~iii~~~~-----~----~kg~~~~~aiLigivvg~~~a~~~G~~d~~~-v~-----~a~~~ 213 (429)
T 3qe7_A 155 ------DSKTIIISITTLAVTVLGSV-----L----FRGFLAIIPILIGVLVGYALSFAMGIVDTTP-II-----NAHWF 213 (429)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHH-----S----SSTTTTTHHHHHHHHHHHHHHHHHHHTTSSH-HH-----HSCSS
T ss_pred ------cHHHHHHHHHHHHHHHHHHH-----H----hcccchhhHHHHHHHHHHHHHHHhcCCCccc-cc-----ccccc
Confidence 01223444444443332221 2 23444557899999998888765531 2211 00 01110
Q ss_pred CCCCCCceEeccCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc-ccccCCCCCCccchhHHHHHHhhhhhhcCCC
Q 004855 274 PGAYENWTVIKDMLNVPIVYIIGAFIPATMIAVLYYFDHSVASQLAQQ-KEFNLRKPSSYHYDLLLLGFLTLLCGLIGIP 352 (727)
Q Consensus 274 p~~~r~W~V~~~~~~vp~~~i~~A~iPA~ll~iL~F~DhnIss~iaq~-ke~kLkKpsgyH~DLlllGi~t~icgllGLP 352 (727)
. ...|.. + ++.+ .++++.+.+++.-++|+.-+..-+.+ .+.+..|.+..|-.++..|+.|+++|++|-+
T Consensus 214 ~--lP~~~~--P--~f~~----~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~ 283 (429)
T 3qe7_A 214 A--LPTLYT--P--RFEW----FAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGST 283 (429)
T ss_dssp C--CCCCCC--C--CCCH----HHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred c--ccCCCC--C--cccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCC
Confidence 0 000110 1 1222 23334455566667788544322222 2223336678999999999999999999998
Q ss_pred CCCC
Q 004855 353 PSNG 356 (727)
Q Consensus 353 ~~nG 356 (727)
|.++
T Consensus 284 p~Tt 287 (429)
T 3qe7_A 284 PNTT 287 (429)
T ss_dssp CEEE
T ss_pred Ccch
Confidence 7643
No 7
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=22.53 E-value=1.8e+02 Score=27.61 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHhhhhhHHHHhhccchhccCcchhHHHHHhhhhhhHHHHhhcCcceeeeccCchHHHHHH
Q 004855 42 YIFFASAIPVISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYT 104 (727)
Q Consensus 42 fifFA~llPaIaFG~ll~~~T~g~lgv~E~LlStai~GiifslfgGQPL~IlGvTGP~~if~~ 104 (727)
.=.+.|+..-..||..+++.-+..-=..=.++++..+++...++.+.+ .+|.+|.+.-...
T Consensus 59 ~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~--~vGaSGai~gl~g 119 (181)
T 2xov_A 59 MHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW--FGGLSGVVYALMG 119 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC--ceeHHHHHHHHHH
Confidence 445667788888998888753322112223456666666677777655 7888887544333
No 8
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=20.05 E-value=92 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc
Q 004855 120 LFIAWSGWVCVWTALLLLMLSILGA 144 (727)
Q Consensus 120 ~fL~~~~WVgiWta~~l~llai~na 144 (727)
.|+.|.-|.++-++++++++++|++
T Consensus 19 gFi~~~k~gt~~~~~~ll~maif~~ 43 (43)
T 1qle_D 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999974
No 9
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=19.21 E-value=7.2e+02 Score=26.94 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=61.6
Q ss_pred HHHHhhccchhccCcchhHHHHHhhhhhhHHHHhhcCcceeeeccCchHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 004855 51 VISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERADLGRNLFIAWSGWVCV 130 (727)
Q Consensus 51 aIaFG~ll~~~T~g~lgv~E~LlStai~GiifslfgGQPL~IlGvTGP~~if~~~ly~f~~~~~~lg~~~fL~~~~WVgi 130 (727)
..+-++..+++.+..=.....+.+++++.++-++|||-|.+--+ +-+ -+-...+-+ .-|++.
T Consensus 246 ~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~--en~-----g~i~~tg~~-----------sr~~~~ 307 (429)
T 3qe7_A 246 LVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG--ENI-----GVMAITRVY-----------STWVIG 307 (429)
T ss_dssp HHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECH--HHH-----HHHHHHTBC-----------CHHHHH
T ss_pred HHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHH--HhH-----HHHHhcCCc-----------chHHHH
Confidence 44555554433223346789999999999999999999977532 111 111122211 136889
Q ss_pred HHHHHHHHHHHhc-ccccceecccchhhHHHHHHHHHH---HHHHHHHHhh
Q 004855 131 WTALLLLMLSILG-ACSIINRFTRVAGELFGLLIAMLF---MQQAIKGLVE 177 (727)
Q Consensus 131 Wta~~l~llai~n-as~li~~~TRft~EiFg~LIsvIF---I~eaik~lv~ 177 (727)
|+++++++++.+. .+.++..+. ..+-|...-+.| ...+++.+++
T Consensus 308 ~ag~~lillgl~pk~~al~~~IP---~~vlgg~~l~lfg~i~~~Gi~~l~~ 355 (429)
T 3qe7_A 308 GAAIFAILLSCVGKLAAAIQMIP---LPVMGGVSLLLYGVIGASGIRVLIE 355 (429)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887664 344555554 444433221222 2346776654
No 10
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=14.91 E-value=1.4e+02 Score=23.63 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc
Q 004855 120 LFIAWSGWVCVWTALLLLMLSILGA 144 (727)
Q Consensus 120 ~fL~~~~WVgiWta~~l~llai~na 144 (727)
.|+.|.-|.++-++++++++++|++
T Consensus 27 gFi~~~k~gt~~~~~~ll~laif~~ 51 (51)
T 1m56_D 27 GFVRMVTWAAVVIVAALIFLALANA 51 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999874
Done!