Query 004855
Match_columns 727
No_of_seqs 180 out of 618
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 07:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004855.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004855hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 58.7 4.1 0.0003 29.7 3.5 25 120-144 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 58.4 4.4 0.00032 29.3 3.6 25 120-144 18-42 (42)
3 d3b45a1 f.51.1.1 (A:91-270) Gl 28.6 49 0.0036 28.8 6.6 59 44-104 61-119 (180)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 25.2 11 0.00078 31.2 1.2 26 565-594 1-26 (158)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 12.9 1.7E+02 0.013 29.1 7.5 45 211-255 386-430 (472)
6 d1h2sb_ f.17.4.1 (B:) Sensory 10.0 1.2E+02 0.0086 22.2 3.5 39 40-78 2-44 (60)
7 d1rh1a2 f.1.1.1 (A:313-511) Co 5.8 97 0.0071 28.7 1.6 36 61-96 124-166 (199)
8 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.2 2E+02 0.015 24.8 3.5 56 44-101 63-118 (189)
9 d2i5nh2 f.23.10.1 (H:1-36) Pho 5.0 1.4E+02 0.01 19.9 1.6 17 122-138 15-32 (36)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 4.9 1.7E+02 0.012 18.9 1.9 11 158-168 9-19 (30)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=58.66 E-value=4.1 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc
Q 004855 120 LFIAWSGWVCVWTALLLLMLSILGA 144 (727)
Q Consensus 120 ~fL~~~~WVgiWta~~l~llai~na 144 (727)
-|+.|.-|+++-..++++++|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=58.41 E-value=4.4 Score=29.35 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc
Q 004855 120 LFIAWSGWVCVWTALLLLMLSILGA 144 (727)
Q Consensus 120 ~fL~~~~WVgiWta~~l~llai~na 144 (727)
-|+.|.-|.++-..++++++|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999985
No 3
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=28.56 E-value=49 Score=28.78 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHhhhhhHHHHhhccchhccCcchhHHHHHhhhhhhHHHHhhcCcceeeeccCchHHHHHH
Q 004855 44 FFASAIPVISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYT 104 (727)
Q Consensus 44 fFA~llPaIaFG~ll~~~T~g~lgv~E~LlStai~GiifslfgGQPL~IlGvTGP~~if~~ 104 (727)
.+.|+..-..||..+++.-+..-=..=.++++.++|++..++... ...|.+|-+..+..
T Consensus 61 l~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~ 119 (180)
T d3b45a1 61 ILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMG 119 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHH
Confidence 355677777799888886543332333445677777777888665 46788886544333
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=25.16 E-value=11 Score=31.24 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhheeeechhhHhhHHHHHH
Q 004855 565 FTIFQTIYLLICFGLTWVPIAGVMFPLMIM 594 (727)
Q Consensus 565 FT~iQl~~l~~~f~vt~~~~aai~FPl~i~ 594 (727)
||+++++..++..||+ +++++|-+.-
T Consensus 1 FTLIELlVViaIIgIL----aaia~P~~~~ 26 (158)
T d2pila_ 1 FTLIELMIVIAIVGIL----AAVALPAYQD 26 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999888887776 7788886543
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=12.95 E-value=1.7e+02 Score=29.12 Aligned_cols=45 Identities=9% Similarity=-0.057 Sum_probs=25.8
Q ss_pred HHHHHHhhcccccccccccccchhhcchhhhHHHHHHhhhccccC
Q 004855 211 LLYTGLKSRKARSWRYGTGWLRSVIADYGVPLMVVVWTGVSYIPS 255 (727)
Q Consensus 211 t~~~a~~lr~~r~s~y~~~~vR~~IaDygvpiaVlv~t~vsy~~~ 255 (727)
-++.++..|..|.+-+..+..|+-.--+++.+++++..++.|.+.
T Consensus 386 q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 386 EMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp HHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 344556666655555545555555555566666666666666653
No 6
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=9.96 E-value=1.2e+02 Score=22.24 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=24.2
Q ss_pred hHHHHHhh---hhhHHHHhhccch-hccCcchhHHHHHhhhhh
Q 004855 40 TTYIFFAS---AIPVISFGEQLER-DTEGVLTAVQTLASTALC 78 (727)
Q Consensus 40 t~fifFA~---llPaIaFG~ll~~-~T~g~lgv~E~LlStai~ 78 (727)
.+|||.-. +.-+|++|+.-.. .|+..-.++|.-+|..++
T Consensus 2 avfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsailg 44 (60)
T d1h2sb_ 2 AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILG 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cEEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHHHHH
Confidence 35677643 4569999998654 455555566666555443
No 7
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.80 E-value=97 Score=28.65 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.9
Q ss_pred hccCcchh---HHHHH----hhhhhhHHHHhhcCcceeeeccC
Q 004855 61 DTEGVLTA---VQTLA----STALCGIIHSIIGGQPLLILGVA 96 (727)
Q Consensus 61 ~T~g~lgv---~E~Ll----Stai~GiifslfgGQPL~IlGvT 96 (727)
+|+++=-. +|+++ +|+++..+||+..|-|+.|+|.+
T Consensus 124 eTgNWrPl~vk~Et~a~~~~At~v~~~~fs~~~g~~~~~~g~~ 166 (199)
T d1rh1a2 124 QTGNWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLS 166 (199)
T ss_dssp SSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 56655443 68887 78888899999999999999986
No 8
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.19 E-value=2e+02 Score=24.80 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHhhhhhHHHHhhccchhccCcchhHHHHHhhhhhhHHHHhhcCcceeeeccCchHHH
Q 004855 44 FFASAIPVISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVI 101 (727)
Q Consensus 44 fFA~llPaIaFG~ll~~~T~g~lgv~E~LlStai~GiifslfgGQPL~IlGvTGP~~i 101 (727)
.+.|+..-+.||..+++.-+..-=..=.++++.+++++++++.+++ ++|.+|.+--
T Consensus 63 l~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~g 118 (189)
T d2nr9a1 63 ILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYA 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHHH
Confidence 4567777888888888765444334445668888888888887765 5798887443
No 9
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=5.00 E-value=1.4e+02 Score=19.92 Aligned_cols=17 Identities=35% Similarity=1.228 Sum_probs=12.1
Q ss_pred hHHH-HHHHHHHHHHHHH
Q 004855 122 IAWS-GWVCVWTALLLLM 138 (727)
Q Consensus 122 L~~~-~WVgiWta~~l~l 138 (727)
|-|+ -|..+|+.+++.+
T Consensus 15 lvwyaqwlviwtvvllyl 32 (36)
T d2i5nh2 15 LVWYAQWLVIWTVVLLYL 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3444 4899999888754
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.93 E-value=1.7e+02 Score=18.91 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 004855 158 LFGLLIAMLFM 168 (727)
Q Consensus 158 iFg~LIsvIFI 168 (727)
||+++|++.|+
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887654
Done!