BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004856
         (727 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/709 (63%), Positives = 537/709 (75%), Gaps = 9/709 (1%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           FL FPA Q+R   T +  FS    C + QHLQQIHAR+I LHG HQN  LSS LID YAN
Sbjct: 16  FLNFPATQSRLLNTLSLLFSR---CNSIQHLQQIHARFI-LHGFHQNPTLSSKLIDCYAN 71

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
           LGLL+ S QVF S+  PN  L+  IL+NL+++GE E+TLLVY+QM  +SM+P E+TYPFV
Sbjct: 72  LGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFV 131

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKD 196
           +RSCS   +   G  IH  +VKLGFD FD V  AL E Y +C   FEN   +  +R  KD
Sbjct: 132 LRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE-FENAHQLFDKRSVKD 190

Query: 197 LKSRW-NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           L   W +SL +   QN   E  F +F  M  E    DS T  NLLR    L S++L +IV
Sbjct: 191 LG--WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIV 248

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           HC+A+VS    DL VNTA+LS+YSKL SL DA+ LFDKM +KDRVVWNIMI+AY + G P
Sbjct: 249 HCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKP 308

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            E LEL   M RSG R+DLFTA+  +SSI+ +K ++WGKQ HA++LRNGSD QVSVHNSL
Sbjct: 309 TECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSL 368

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           IDMYCEC+ L+ A KIF+ +  K+V+SWS+MIKGYV + QSL AL LFS+MK +G++ DF
Sbjct: 369 IDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADF 428

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           V +INILPA V+IGALE+VKYLHGYSMKLGL SL S+NTA+ I+YAKCG IEMA  LF+E
Sbjct: 429 VIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE 488

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           EKID KD+I WNSMISA+A HGDWSQCFKLY +MK S+ +PD +TFLGLLTACVN+GLVE
Sbjct: 489 EKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVE 548

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +G+  FKEM ESYG +PSQEHYA MVNLLGRAG + EA ELVK+MP KPDARVWGPLLSA
Sbjct: 549 KGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSA 608

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           CKMH  ++LAE  AEKLI+MEP NAGNY+LLSNIYAAAGKW+GVAKMR+FLR++GLKK P
Sbjct: 609 CKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIP 668

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
           GCSW+EI   V EF  ADQ+HP+A  IYTILG LELEI E R +S + L
Sbjct: 669 GCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEVREKSPDTL 717


>gi|449526313|ref|XP_004170158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 706

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/709 (61%), Positives = 523/709 (73%), Gaps = 25/709 (3%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           FL FPA Q+R   T +  FS    C + QHLQQIHAR+I LHG HQN  LSS LID YAN
Sbjct: 16  FLNFPATQSRLLNTLSLLFSR---CNSIQHLQQIHARFI-LHGFHQNPTLSSKLIDCYAN 71

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
           LGLL+ S QVF S+  PN  L+  IL+NL+++GE E+TLLVY+QM  +SM+P E+TYPFV
Sbjct: 72  LGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFV 131

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKD 196
           +RSCS   +   G  IH  +VKLGFD FD V  AL E Y +C   FEN   +  +R  KD
Sbjct: 132 LRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE-FENAHQLFDKRSVKD 190

Query: 197 LKSRW-NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           L   W +SL +   QN   E  F +F  M  E    DS T  NLLR    L S++L +IV
Sbjct: 191 LG--WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIV 248

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           HC+A+VS    DL VNTA+LS+YSKL SL DA+ LFDKM +KDRVVWNIMI+AY + G P
Sbjct: 249 HCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKP 308

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            E LEL   M RSG R+DLFTA+  +SSI+ +K ++WGKQ HA++LRNGSD QVSVHNSL
Sbjct: 309 TECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSL 368

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           IDMYCEC+ L+ A KIF+                ++T   SL AL LFS+MK +G++ DF
Sbjct: 369 IDMYCECKILDSACKIFN----------------WMTDKSSLTALSLFSKMKSDGIQADF 412

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           V +INILPA V+IGALE+VKYLHGYSMKLGL SL S+NTA+ I+YAKCG IEMA  LF+E
Sbjct: 413 VIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE 472

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           EKID KD+I WNSMISA+A HGDWSQCFKLY +MK S+ +PD +TFLGLLTACVN+GLVE
Sbjct: 473 EKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVE 532

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +G+  FKEM ESYG +PSQEHYA MVNLLGRAG + EA ELVK+MP KPDARVWGPLLSA
Sbjct: 533 KGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSA 592

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           CKMH  ++LAE  AEKLI+MEP NAGNY+LLSNIYAAAGKW+GVAKMR+FLR++GLKK P
Sbjct: 593 CKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIP 652

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
           GCSW+EI   V EF  ADQ+HP+A  IYTILG LELEI E R +S + L
Sbjct: 653 GCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEVREKSPDTL 701


>gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1040

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/697 (59%), Positives = 525/697 (75%), Gaps = 19/697 (2%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P   TR   T +   S+LNLC  PQ+LQQIHAR+  LHGLHQN  LSS LIDSY+N GLL
Sbjct: 14  PFQTTRFFNTTS---SILNLCTKPQYLQQIHARFF-LHGLHQNSSLSSKLIDSYSNFGLL 69

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
             S ++F+   +P+S++Y   L+NL  FGEYEKTL +YK+M  +SM P ED    V++S 
Sbjct: 70  HFSHKIFSFTENPDSIIYNAFLRNLFMFGEYEKTLFLYKEMVQKSMCPDEDCCFSVLKS- 128

Query: 142 SCLLDFISGEK-----IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
              L ++  EK      H  VVKLG D+FD VG+ L+E Y     GF N  G+++RK   
Sbjct: 129 ---LFYVFHEKGLIMMAHGHVVKLGMDAFDLVGNTLIELY-----GFLNGNGLVERKSVT 180

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
             + WN+LI  A ++GK  +SFELF  MR E  + +S TLINLLR+TVE  SL++G+++H
Sbjct: 181 KLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLH 240

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + V S+ CK+L+VNTALLSMY+KL SL+DA+++F+KM +KD VVWNIMIS Y  SG PK
Sbjct: 241 SLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPK 300

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           ESLEL+ CMVRSG R D+FTAI A+SSI+ +K+IEWGKQ+HA V+RNGSDYQVSVHNSL+
Sbjct: 301 ESLELVYCMVRSGIRPDMFTAIPAISSITKLKSIEWGKQLHAQVIRNGSDYQVSVHNSLV 360

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           DMY  C DLN ARKIF  +K +TVVSWS+MIKGY  HD  LEAL LF EMKL G +VD V
Sbjct: 361 DMYSTCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLV 420

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            +INILPA   IGAL +V YLHGYS+K  L+SL S+ T++  SYAKCGCIEMA +LF+EE
Sbjct: 421 IVINILPAFAKIGALHYVGYLHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEE 480

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K   KDI+ WNSMI+AY+ HG+W QCF+LY Q+K S V+PD +TFLG+LTACVN+GLV++
Sbjct: 481 KSSLKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHVTFLGMLTACVNSGLVDK 540

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+ IFKEM + YG++PS+EH A MV+LLGRAG +DEAR++++      DARV+GPLLSAC
Sbjct: 541 GKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKIDEARKIIETNQLNSDARVYGPLLSAC 600

Query: 617 KMHS-ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           KMH  ET+ AEL AEKLI MEPEN  NYVLLSNI+AAAGKW+  AKMR+FLRDRGLKKTP
Sbjct: 601 KMHGLETDFAELAAEKLIKMEPENPANYVLLSNIFAAAGKWDKFAKMRSFLRDRGLKKTP 660

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           GCSW+ +    HEF  AD SHP+++ IY++L +LELE
Sbjct: 661 GCSWVVLDGQFHEFRVADHSHPRSEDIYSVLKVLELE 697


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/605 (63%), Positives = 463/605 (76%), Gaps = 5/605 (0%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M  +SM+P E+TYPFV+RSCS   +   G  IH  +VKLGFD FD V  AL E Y +C  
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60

Query: 182 GFENEKGMI-QRKFKDLKSRW-NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            FEN   +  +R  KDL   W +SL +   QN   E  F +F  M  E    DS T  NL
Sbjct: 61  -FENAHQLFDKRSVKDLG--WPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNL 117

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           LR    L S++L +IVHC+A+VS    DL VNTA+LS+YSKL SL DA+ LFDKM +KDR
Sbjct: 118 LRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDR 177

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           VVWNIMI+AY + G P E LEL   M RSG R+DLFTA+  +SSI+ +K ++WGKQ HA+
Sbjct: 178 VVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAH 237

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +LRNGSD QVSVHNSLIDMYCEC+ L+ A KIF+ +  K+V+SWS+MIKGYV + QSL A
Sbjct: 238 ILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTA 297

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LFS+MK +G++ DFV +INILPA V+IGALE+VKYLHGYSMKLGL SL S+NTA+ I+
Sbjct: 298 LSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLIT 357

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG IEMA  LF+EEKID KD+I WNSMISA+A HGDWSQCFKLY +MK S+ +PD +
Sbjct: 358 YAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQV 417

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFLGLLTACVN+GLVE+G+  FKEM ESYG +PSQEHYA MVNLLGRAG + EA ELVK+
Sbjct: 418 TFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKN 477

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPDARVWGPLLSACKMH  ++LAE  AEKLI+MEP NAGNY+LLSNIYAAAGKW+GV
Sbjct: 478 MPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGV 537

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
           AKMR+FLR++GLKK PGCSW+EI   V EF  ADQ+HP+A  IYTILG LELEI E R +
Sbjct: 538 AKMRSFLRNKGLKKIPGCSWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIKEVREK 597

Query: 720 SSEEL 724
           S + L
Sbjct: 598 SPDTL 602



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 20/271 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q HA +I+ +G    + + ++LID Y    +L  + ++FN +T  + + +  ++K   K
Sbjct: 232 KQTHA-HILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVK 290

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI---HAQVVKLGFDSF 165
            G+    L ++ +M    +   +  +  +I      +   + E +   H   +KLG  S 
Sbjct: 291 NGQSLTALSLFSKMKSDGI---QADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSL 347

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR------WNSLISLAVQNGKSEKSFE 219
             +  AL+  Y KC G  E    M QR F++ K        WNS+IS    +G   + F+
Sbjct: 348 PSLNTALLITYAKC-GSIE----MAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFK 402

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA-LLSMY 278
           L+  M+   ++ D  T + LL + V    +E G+        S  C+    + A ++++ 
Sbjct: 403 LYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLL 462

Query: 279 SKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
            +   + +A  L   M  K D  VW  ++SA
Sbjct: 463 GRAGLISEAGELVKNMPIKPDARVWGPLLSA 493


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 366/615 (59%), Gaps = 3/615 (0%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N++++   +    K G + K L +Y QM    + P +  +  VI++C    D  +G K+H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             ++  GF+S   VG AL   Y KC G  EN + +  R  K     WN++I+   QNG+ 
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKC-GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            ++  LF  M++ G + +S TL++++     L +LE G+ +HC A+ S    D+ V   L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY+K  ++  A  LF++M  +D   WN +I  Y  +    E+L     M   G + + 
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T ++ + + + +  +E G+Q+H   +R+G +    V N+L++MY +C ++N A K+F+ 
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFER 382

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  K VV+W+++I GY  H    EAL LF EM+ +G++ D   I+++LPAC +  ALE  
Sbjct: 383 MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K +HGY+++ G  S   V T +   YAKCG +  A +LF  E++  +D+++W +MI AY 
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLF--ERMPEQDVVSWTTMILAYG 500

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            HG       L+++M+++  + D I F  +LTAC +AGLV++G   F+ MK  YG  P  
Sbjct: 501 IHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL 560

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EHYA +V+LLGRAGH+DEA  ++K+M  +PDA VWG LL AC++H   EL E  A+ L  
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFE 620

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++P+NAG YVLLSNIYA A +W  VAK+R  ++++G+KK PGCS + + + V  F   D+
Sbjct: 621 LDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDR 680

Query: 695 SHPQADAIYTILGIL 709
           +HPQ++ IY +L IL
Sbjct: 681 THPQSEQIYAMLEIL 695



 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 247/441 (56%), Gaps = 4/441 (0%)

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           N+    Q   ++    W   I   V+NG   K+  L+  M+  G   D    ++++++  
Sbjct: 72  NQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACG 131

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
               L+ GR VH   +   F  D+ V TAL SMY+K  SLE+A+ +FD+M  +D V WN 
Sbjct: 132 SQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNA 191

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I+ Y Q+G P E+L L   M  +G + +  T ++ +   + +  +E GKQ+H   +R+G
Sbjct: 192 IIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG 251

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            +  V V N L++MY +C ++N A K+F+ +  + V SW+++I GY  + Q  EAL  F+
Sbjct: 252 IESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFN 311

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M++ G++ + +T++++LPAC ++ ALE  + +HGY+++ G  S   V  A+   YAKCG
Sbjct: 312 RMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCG 371

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A +LF  E++  K+++ WN++IS Y++HG   +   L+ +M+   ++PD    + +
Sbjct: 372 NVNSAYKLF--ERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSV 429

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC +   +E+G+ I      S G+E +      +V++  + G+++ A++L + MP + 
Sbjct: 430 LPACAHFLALEQGKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQ 487

Query: 605 DARVWGPLLSACKMHSETELA 625
           D   W  ++ A  +H   E A
Sbjct: 488 DVVSWTTMILAYGIHGHGEDA 508



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 224/421 (53%), Gaps = 7/421 (1%)

Query: 36  FSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S++  C +   LQ   ++H   II  G   ++I+ + L   Y   G L  ++QVF+ + 
Sbjct: 124 LSVIKACGSQSDLQAGRKVHED-IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP 182

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + + +  I+   S+ G+  + L ++ +M +  + P   T   V+  C+ LL    G++
Sbjct: 183 KRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ 242

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQN 211
           IH   ++ G +S   V + LV  Y KC G       + +R   +D+ S WN++I     N
Sbjct: 243 IHCYAIRSGIESDVLVVNGLVNMYAKC-GNVNTAHKLFERMPIRDVAS-WNAIIGGYSLN 300

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            +  ++   F  M++ G + +S T++++L +   L +LE G+ +H  A+ S F  +  V 
Sbjct: 301 SQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVG 360

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL++MY+K  ++  A  LF++M  K+ V WN +IS Y Q G P E+L L + M   G +
Sbjct: 361 NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIK 420

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D F  ++ + + +    +E GKQ+H   +R+G +  V V   L+D+Y +C ++N A+K+
Sbjct: 421 PDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKL 480

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +  + VVSW++MI  Y  H    +AL LFS+M+  G ++D +    IL AC + G +
Sbjct: 481 FERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLV 540

Query: 452 E 452
           +
Sbjct: 541 D 541


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/687 (34%), Positives = 399/687 (58%), Gaps = 10/687 (1%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSN----LIDSYANLGLLSLSQQVFNS 90
           +  LL+ C++P  L+    R I +  +   L+   N    +++ YA  G +  +++VF+ 
Sbjct: 247 TMRLLSSCKSPSALEC--GREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           + + + + +  I+   +  G  E    ++++M  + + P   TY  V+ + S       G
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWG 364

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           + +H+ ++  G +S   VG ALV+ Y KC G +++ + + ++        WN++I    +
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKC-GSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G  E++ E++  M+ EG   +  T + LL + V   +L  GR +H   V   F  D+SV
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             AL+SMY++  S++DA++LF+KM  KD + W  MI    +SG   E+L +   M ++G 
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           + +  T  + +++ S+   ++WG+++H  V+  G      V N+L++MY  C  +  AR+
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQ 603

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD +  + +V++++MI GY  H+   EAL+LF  ++ EG++ D VT IN+L AC N G+
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGS 663

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           LE  K +H   +K G  S +S+  A+  +YAKCG    A  +FD  K+  +++I+WN++I
Sbjct: 664 LEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFD--KMMKRNVISWNAII 721

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
              A+HG      +L+ +MK   ++PD++TF+ LL+AC +AGL+EEGR  F  M   +G 
Sbjct: 722 GGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGI 781

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
            P+ EHY  MV+LLGRAG +DE   L+K MPF+ + R+WG LL AC++H    +AE  AE
Sbjct: 782 TPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAE 841

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
             + ++P+NA  YV LS++YAAAG W+  AK+R  +  RG+ K PG SWIE+G  +H F 
Sbjct: 842 SSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFV 901

Query: 691 AADQSHPQADAIYTILGILELEI-MEG 716
           A D+SHP+++ IY  L  L   + MEG
Sbjct: 902 AEDRSHPESEKIYAELDKLTHAMKMEG 928



 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 157/584 (26%), Positives = 299/584 (51%), Gaps = 22/584 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-------SITSPNSLLYGT 101
           +++H  +II H    +    + LI+ Y   G +  ++QV+N       ++ S N+++ G 
Sbjct: 161 REVH-EHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGY 219

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK-- 159
           +     ++G  E+ L + ++M    +     T   ++ SC        G +IH + +K  
Sbjct: 220 V-----QYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKAR 274

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
           L FD   +V + ++  Y KC    E  +   + + K + S W  +I      G SE +FE
Sbjct: 275 LLFDV--NVANCILNMYAKCGSIHEAREVFDKMETKSVVS-WTIIIGGYADCGHSEIAFE 331

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           +F+ M+ EG   +  T IN+L +     +L+ G+ VH   + +    DL+V TAL+ MY+
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYA 391

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K  S +D + +F+K+ ++D + WN MI    + G  +E+ E+   M R G   +  T + 
Sbjct: 392 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVI 451

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            +++      + WG+++H+ V+++G  + +SV N+LI MY  C  +  AR +F+ +  K 
Sbjct: 452 LLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKD 511

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           ++SW++MI G        EAL +F +M+  G++ + VT  +IL AC +  AL+  + +H 
Sbjct: 512 IISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQ 571

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             ++ GL + + V   +   Y+ CG ++ A ++FD  ++  +DI+ +N+MI  YA H   
Sbjct: 572 QVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFD--RMTQRDIVAYNAMIGGYAAHNLG 629

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +  KL+ ++++  ++PD +T++ +L AC N+G +E  + I   + +  GY        +
Sbjct: 630 KEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKD-GYLSDTSLGNA 688

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           +V+   + G   +A  LV D   K +   W  ++  C  H   +
Sbjct: 689 LVSTYAKCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQHGRGQ 731



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 264/517 (51%), Gaps = 11/517 (2%)

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           FN  +  N L   T     +  G+ ++ + V + +  Q        Y  +++ C  + D 
Sbjct: 99  FNGRSKANKLHSHTYKDERTITGK-DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDL 157

Query: 148 ISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNS 203
           ++G ++H  +++     D +    +AL+  YI+C G  E  + +  +     ++   WN+
Sbjct: 158 VAGREVHEHIIQHCTVLDQY--TVNALINMYIQC-GSIEEARQVWNKLNHTERTVHSWNA 214

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           ++   VQ G  E++ +L + M+  G      T + LL S     +LE GR +H  A+ + 
Sbjct: 215 MVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKAR 274

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              D++V   +L+MY+K  S+ +A+ +FDKM  K  V W I+I  Y   G  + + E+  
Sbjct: 275 LLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQ 334

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M + G   +  T I  +++ S    ++WGK +H+++L  G +  ++V  +L+ MY +C 
Sbjct: 335 KMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCG 394

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
                R++F+ +  + +++W++MI G        EA  ++ +M+ EG+  + +T + +L 
Sbjct: 395 SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           ACVN  AL   + +H   +K G     SV  A+   YA+CG I+ A  LF+  K+  KDI
Sbjct: 455 ACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFN--KMVRKDI 512

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           I+W +MI   AK G  ++   ++  M+Q+ ++P+ +T+  +L AC +   ++ GR I ++
Sbjct: 513 ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQ 572

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           + E+ G         ++VN+    G + +AR++   M
Sbjct: 573 VIEA-GLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 157/301 (52%), Gaps = 6/301 (1%)

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
            +++++  + + G R +    +  +     +K++  G+++H +++++ +       N+LI
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 377 DMYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           +MY +C  +  AR++++ +    +TV SW++M+ GYV +    EAL+L  EM+  G+ + 
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T + +L +C +  ALE  + +H  +MK  L    +V   I   YAKCG I  A E+FD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             K+++K +++W  +I  YA  G     F+++ +M+Q  V P+ IT++ +L A      +
Sbjct: 304 --KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAAL 361

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           + G+ +   +  + G+E       ++V +  + G   + R++ + +    D   W  ++ 
Sbjct: 362 KWGKTVHSHILNA-GHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIG 419

Query: 615 A 615
            
Sbjct: 420 G 420


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/682 (34%), Positives = 398/682 (58%), Gaps = 9/682 (1%)

Query: 28  PHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           P  T   SF  L+ C++P  L+   +IH +  +  GL  ++ +++ +++ YA  G +  +
Sbjct: 124 PDRTTIMSF--LSSCKSPGALEWGREIHFQ-AMQAGLLFDVKVANCILNMYAKCGSIEEA 180

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +   + + +   +   +  G  E    ++++M  + + P   TY  V+ + S  
Sbjct: 181 REVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                G+ +H++++  G +S   VG ALV+ Y KC G +++ + + ++        WN++
Sbjct: 241 AALKWGKAVHSRILNAGHESDTAVGTALVKMYAKC-GSYKDCRQVFEKLVNRDLIAWNTM 299

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I    + G  E++ E++  M+ EG   +  T + LL + V   +L  G+ +H     + F
Sbjct: 300 IGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGF 359

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ V  AL+SMYS+  S++DA+++FDKM  KD + W  MI    +SGF  E+L +   
Sbjct: 360 TSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQE 419

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M ++G   +  T  + +++ S+   +EWG+++H  V+  G      V N+L++MY  C  
Sbjct: 420 MQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGS 479

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  AR++FD +  + +V++++MI GY  H+   EAL+LF  ++ EG++ D VT IN+L A
Sbjct: 480 VKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 539

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N G+LE  + +H    K G  S +SV  A+  +YAKCG    A  +F  EK+  +++I
Sbjct: 540 CANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVF--EKMTKRNVI 597

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WN++I   A+HG      +L+ +MK   V+PD++TF+ LL+AC +AGL+EEGR  F  M
Sbjct: 598 SWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSM 657

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            + +   P+ EHY  MV+LLGRAG +DEA  L+K MPF+ + R+WG LL AC++H    +
Sbjct: 658 SQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPV 717

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           AE  AE  + ++ +NA  YV LS++YAAAG W+  AK+R  +  RG+ K PG SWI++G 
Sbjct: 718 AERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGD 777

Query: 685 LVHEFWAADQSHPQADAIYTIL 706
            +H F A D+SHPQ++ IY  L
Sbjct: 778 KLHYFVAEDRSHPQSEKIYAEL 799



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 146/543 (26%), Positives = 276/543 (50%), Gaps = 12/543 (2%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +++ C  + D ++G ++H  +++          +AL+  YI+C  G   E   + +K
Sbjct: 26  YMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQC--GSIEEARQVWKK 83

Query: 194 FKDLKS---RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
              ++     WN+++   +Q G  EK+ +L + M+  G   D  T+++ L S     +LE
Sbjct: 84  LSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALE 143

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            GR +H  A+ +    D+ V   +L+MY+K  S+E+A+ +FDKM  K  V W I I  Y 
Sbjct: 144 WGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYA 203

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G  + + E+   M + G   +  T I+ +++ S+   ++WGK +H+ +L  G +   +
Sbjct: 204 DCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTA 263

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V  +L+ MY +C      R++F+ +  + +++W++MI G        EA  ++++M+ EG
Sbjct: 264 VGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREG 323

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V  + +T + +L ACVN  AL   K +H    K G  S   V  A+   Y++CG I+ A 
Sbjct: 324 VMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDAR 383

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +FD  K+  KD+I+W +MI   AK G  ++   +Y +M+Q+ V P+ +T+  +L AC +
Sbjct: 384 LVFD--KMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSS 441

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
              +E GR I +++ E+ G         ++VN+    G + +AR++   M  + D   + 
Sbjct: 442 PAALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYN 499

Query: 611 PLLSACKMHSETELAELTAEKLI--SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
            ++     H+  + A    ++L    ++P+    Y+ + N  A +G      ++ T +R 
Sbjct: 500 AMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAREIHTLVRK 558

Query: 669 RGL 671
            G 
Sbjct: 559 GGF 561



 Score =  218 bits (556), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 228/405 (56%), Gaps = 6/405 (1%)

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           + + + ++ + ++ +GA+ +S   + +L+  +E+K L  GR VH   +      D     
Sbjct: 3   EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVN 62

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGF 330
           AL++MY +  S+E+A+ ++ K+S  +R V  WN M+  Y Q G+ +++L+LL  M + G 
Sbjct: 63  ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL 122

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D  T ++ +SS  +   +EWG+++H   ++ G  + V V N +++MY +C  +  AR+
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEARE 182

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD ++ K+VVSW+  I GY    +S  A  +F +M+ EGV  + +T I++L A  +  A
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAA 242

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+  K +H   +  G  S ++V TA+   YAKCG  +   ++F  EK+ ++D+I WN+MI
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVF--EKLVNRDLIAWNTMI 300

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
              A+ G W +  ++Y QM++  V P+ IT++ LL ACVN+  +  G+ I   + ++ G+
Sbjct: 301 GGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GF 359

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
                   +++++  R G + +AR LV D   + D   W  ++  
Sbjct: 360 TSDIGVQNALISMYSRCGSIKDAR-LVFDKMVRKDVISWTAMIGG 403


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 392/678 (57%), Gaps = 8/678 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL LC + + L QI    +I +GL+   +  + L+  ++  G ++ + +VF  I      
Sbjct: 55  LLELCTSMKELHQI-IPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           LY T+LK  +K    E  L    +M    + P    + ++++ C    D   G++IH Q+
Sbjct: 114 LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +   F +       +V  Y KC    +  K   +   +DL S WN++I+   QNG ++K+
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGFSQNGFAKKA 232

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            EL   M+ EG   DS TL+ +L +  ++  L +G+ +H  A+ + F K ++++TAL  M
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           YSK  S+E A+++FD M  K  V WN M+  Y Q+G P++++ +   M+  G      T 
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 338 IAAVSSISTMKNIEWGKQMHANV--LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           + A+ + + + ++E GK +H  V  L  GSD  +SV NSLI MY +C+ ++ A  IF+++
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSD--ISVMNSLISMYSKCKRVDIASDIFNNL 410

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             +T VSW++MI GY  + +  EAL  FSEMK  G++ D  T+++++PA   +    H K
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           ++HG  ++  L+    V TA+   Y+KCG I MA +LFD   I  + +ITWN+MI  Y  
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD--MISDRHVITWNAMIDGYGT 528

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG       L+ +MK+  V P+ IT+L +++AC ++GLV+EG   FK MK+ YG EPS +
Sbjct: 529 HGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMD 588

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY +MV+LLGRAG + EA + +++MP  P   V+G +L ACK+H   E+ E  A+KL  +
Sbjct: 589 HYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFEL 648

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
            P+  G +VLL+NIYA+  KW+ VA++R  +  +GLKKTPGCS +E+   VH F++   +
Sbjct: 649 NPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTT 708

Query: 696 HPQADAIYTILGILELEI 713
           HPQ+  IY  L  L  EI
Sbjct: 709 HPQSKRIYAFLEELVYEI 726


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/686 (36%), Positives = 395/686 (57%), Gaps = 10/686 (1%)

Query: 30  MTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           M  T   SLL  C + ++L+Q   IH + + L GL  N+ L  +LI+ Y +  L   ++ 
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSL-GLQNNITLCKSLINLYFSCHLFQSAKL 59

Query: 87  VFNSITSPNSL-LYGTILKNLSK-FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           VF +I +P  + L+  ++   +K F   E   + ++ +    + P   TYP V+++CS L
Sbjct: 60  VFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGL 119

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                G+ +H  V+K GF     V  + V  Y KC+  FE+   +     +   + WN++
Sbjct: 120 GRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNV-FEDAIKLFDEMPERDVASWNNV 178

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           IS   Q+G+ EK+ ELF+ M++ G + DS TL  ++ S   L  LE G+ +H   V S F
Sbjct: 179 ISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGF 238

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D  V++AL+ MY K   LE AK +F+++  K+ V WN MI+ Y   G  K  +EL   
Sbjct: 239 ALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRR 298

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M   G R  L T  + + + S   N++ GK +H  ++RN  +  + V++SLID+Y +C +
Sbjct: 299 MDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGN 358

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  A  +F ++    VVSW+ MI GYV     LEAL +F++M+  GV+ D +T  ++LPA
Sbjct: 359 IGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPA 418

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C  +  LE  K +H + ++  L     V  A+   YAKCG ++ A  +F++  +  +D +
Sbjct: 419 CSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQ--LPERDFV 476

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +W SMI+AY  HG   +  KL+ +M+QSD +PD +TFL +L+AC +AGLV+EG   F +M
Sbjct: 477 SWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQM 536

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETE 623
              YG++P+ EHY+ +++LLGR G + EA E+++  P  + D  +   L SAC +H + +
Sbjct: 537 IAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLD 596

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L E     LI  +P++   Y++LSN+YA+  KW+ V K+R  +++ GLKK PGCSWIE+G
Sbjct: 597 LGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVG 656

Query: 684 KLVHEFWAADQSHPQADAIYTILGIL 709
           K +H F   D+SHPQAD IY  + IL
Sbjct: 657 KRIHPFVVEDKSHPQADMIYECMSIL 682


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 390/678 (57%), Gaps = 8/678 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL LC + + L QI    +I +GL+   +  + L+  ++  G ++ + +VF  I      
Sbjct: 55  LLELCTSMKELHQI-IPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           LY T+LK  +K    E  L    +M    + P    + ++++ C    D   G++IH Q+
Sbjct: 114 LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +   F +       +V  Y KC    +  K   +   +DL S WN++I+   QNG ++K+
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVS-WNTIIAGFSQNGFAKKA 232

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            EL   M+ EG   DS TL+ +L +  ++  L +G+ +H  A+ + F K ++++TAL  M
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           YSK  S+E A+++FD M  K  V WN M+  Y Q+G P++++ +   M+  G      T 
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 338 IAAVSSISTMKNIEWGKQMHANV--LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           + A+ + + + ++E GK +H  V  L  GSD  +SV NSLI MY +C+ ++ A  IF+++
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSD--ISVMNSLISMYSKCKRVDIASDIFNNL 410

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             +T VSW++MI GY  + +  EAL  FSEMK  G++ D  T+++++PA   +    H K
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           ++HG  ++  L+    V TA+   Y+KCG I MA +LFD   I  + +ITWN+MI  Y  
Sbjct: 471 WIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFD--MISDRHVITWNAMIDGYGT 528

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG       L+ +MK+  V P+ IT+L +++AC ++GLV+EG   FK MK+ YG EPS +
Sbjct: 529 HGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMD 588

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY +MV+LLGRAG + EA + +++MP  P   V+G    ACK+H   E+ E  A+KL  +
Sbjct: 589 HYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFEL 648

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
            P+  G +VLL+NIYA+  KW+ VA++R  +  +GLKKTPGCS +E+   VH F++   +
Sbjct: 649 NPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTT 708

Query: 696 HPQADAIYTILGILELEI 713
           HPQ+  IY  L  L  EI
Sbjct: 709 HPQSKRIYAFLEELVYEI 726


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/662 (36%), Positives = 380/662 (57%), Gaps = 7/662 (1%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSK 108
           IH + + L GL  N+ L  +LI+ Y +  L   ++ VF +I +P   +L  G +      
Sbjct: 217 IHQKIVSL-GLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKN 275

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           F   E   + ++ +    + P   TYP V+++CS L     G+ +H  V+K GF     V
Sbjct: 276 FIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVV 335

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             + V  Y KC+  FE+   +     +   + WN++IS   Q+G+ EK+ ELF+ M++ G
Sbjct: 336 MSSAVGMYAKCNV-FEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSG 394

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + DS TL  ++ S   L  LE G+ +H   V S F  D  V++AL+ MY K   LE AK
Sbjct: 395 FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAK 454

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+++  K+ V WN MI+ Y   G  K  +EL   M   G R  L T  + + + S   
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSV 514

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N++ GK +H  ++RN  +  + V++SLID+Y +C ++  A  +F ++    VVSW+ MI 
Sbjct: 515 NLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMIS 574

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GYV     LEAL +F++M+  GV+ D +T  ++LPAC  +  LE  K +H + ++  L  
Sbjct: 575 GYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEI 634

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V  A+   YAKCG ++ A  +F++  +  +D ++W SMI+AY  HG   +  KL+ +
Sbjct: 635 NEVVMGALLDMYAKCGAVDEALHIFNQ--LPERDFVSWTSMIAAYGSHGQAFEALKLFEK 692

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M+QSD +PD +TFL +L+AC +AGLV+EG   F +M   YG++P+ EHY+ +++LLGR G
Sbjct: 693 MQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVG 752

Query: 589 HMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
            + EA E+++  P  + D  +   L SAC +H + +L E     LI  +P++   Y++LS
Sbjct: 753 RLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILS 812

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           N+YA+  KW+ V K+R  +++ GLKK PGCSWIE+GK +H F   D+SHPQAD IY  + 
Sbjct: 813 NMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMS 872

Query: 708 IL 709
           IL
Sbjct: 873 IL 874



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 199/373 (53%), Gaps = 18/373 (4%)

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAY 309
           LG+++H   V      ++++  +L+++Y      + AK++F  + +  D  +WN +++A 
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 310 YQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
            ++    E LE+   ++   + + D FT  + + + S +  + +GK +H +V+++G    
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           V V +S + MY +C     A K+FD +  + V SW+++I  Y    Q  +AL LF EMK+
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G + D VT+  ++ +C  +  LE  K +H   ++ G      V++A+   Y KCGC+EM
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A E+F  E+I  K++++WNSMI+ Y+  GD   C +L+ +M +  +RP L T   +L AC
Sbjct: 453 AKEVF--EQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 510

Query: 549 VNAGLVEEGRIIFKEMKESYGY------EPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
             +  ++ G+ I       +GY      E      +S+++L  + G++  A  + ++MP 
Sbjct: 511 SRSVNLQLGKFI-------HGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP- 562

Query: 603 KPDARVWGPLLSA 615
           K +   W  ++S 
Sbjct: 563 KTNVVSWNVMISG 575


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/694 (34%), Positives = 399/694 (57%), Gaps = 10/694 (1%)

Query: 20  RFPANQT--RPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           R P+++T    H+    S  LL LC + + L Q     II +GL+   +  + L+  +  
Sbjct: 63  RTPSSRTYIPSHVYKHPSAILLELCTSMKELHQF-IPLIIKNGLYSEHLFQTKLVSLFCK 121

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
            G L  + +VF  I      LY T+LK  ++    +  +  + +M    + P    + ++
Sbjct: 122 FGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYL 181

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           ++ C    D   G++IH Q++  GF S       +V  Y KC    E  K   +   +DL
Sbjct: 182 LKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDL 241

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              WN++IS   QNG  + + EL   M+ EG   DS T++++L +  ++ SL +GR +H 
Sbjct: 242 VC-WNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHG 300

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
            ++ + F   ++V+TAL+ MYSK  S+  A+++FD+M+ K  V WN MI  Y Q+G P  
Sbjct: 301 YSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGA 360

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA--NVLRNGSDYQVSVHNSL 375
           ++E+   M+         T + A+ + + + ++E G+ +H   + L  GSD  VSV NSL
Sbjct: 361 AMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSD--VSVMNSL 418

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           I MY +C+ ++ A +IF++++ KT+VSW++MI GY  + +  EA+  F +M+L+ ++ D 
Sbjct: 419 ISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS 478

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+++++PA   +  L   K++HG  ++  L+    V TA+   YAKCG +  A +LFD 
Sbjct: 479 FTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFD- 537

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +D + + TWN+MI  Y  HG      +L+ +MK+  ++P+ +TFL +L+AC ++GLVE
Sbjct: 538 -MMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVE 596

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG   F  MK+ YG EP+ +HY +MV+LLGRA  ++EA + ++ MP +P   V+G +L A
Sbjct: 597 EGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGA 656

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H   EL E  A ++  ++P++ G +VLL+NIYA A  W+ VA++RT +  +G++KTP
Sbjct: 657 CRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTP 716

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           G S +E+   VH F++   SHPQA  IY  L  L
Sbjct: 717 GWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETL 750


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/686 (33%), Positives = 395/686 (57%), Gaps = 6/686 (0%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           H+    S  LL LC + + L QI    II +G +   +  + LI  +     ++ + +VF
Sbjct: 41  HVYRHPSAILLELCTSLKELHQI-LPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVF 99

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
             +     +LY T+LK  +K       +  Y++M    + P    + ++++     LD  
Sbjct: 100 EPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLR 159

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISL 207
            G +IH  V+  GF S      A+V  Y KC    E+   M +R   +DL S WN++++ 
Sbjct: 160 RGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQ-IEDAYKMFERMPQRDLVS-WNTVVAG 217

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             QNG + ++ ++   M+  G + DS TL+++L +  +LK+L +GR +H  A  + F   
Sbjct: 218 YAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM 277

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           ++V TA+L  Y K  S+  A+++F  MS ++ V WN MI  Y Q+G  +E+    + M+ 
Sbjct: 278 VNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD 337

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G      + + A+ + + + ++E G+ +H  +      + VSV NSLI MY +C+ ++ 
Sbjct: 338 EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  +F ++K KTVV+W++MI GY  +    EAL LF EM+   ++ D  T+++++ A  +
Sbjct: 398 AASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALAD 457

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +      K++HG +++  ++    V TA+  ++AKCG I+ A +LFD   +  + +ITWN
Sbjct: 458 LSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFD--LMQERHVITWN 515

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +MI  Y  +G   +   L+ +M+   V+P+ ITFL ++ AC ++GLVEEG   F+ MKE+
Sbjct: 516 AMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKEN 575

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           YG EP+ +HY +MV+LLGRAG +D+A + ++DMP KP   V G +L AC++H   EL E 
Sbjct: 576 YGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEK 635

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
           TA++L  ++P++ G +VLL+N+YA+A  W+ VA++RT +  +G++KTPGCS +E+   VH
Sbjct: 636 TADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVH 695

Query: 688 EFWAADQSHPQADAIYTILGILELEI 713
            F++   +HPQ+  IY  L  L  E+
Sbjct: 696 TFYSGSTNHPQSKRIYAYLETLGDEM 721


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/640 (34%), Positives = 373/640 (58%), Gaps = 5/640 (0%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           L + L+  +   G L  +  VF  ++  +   +  ++   +K G +++ L +Y +M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           + P   T+P V+++C+ + D   G++IHA V++ GF+S  DVG+AL+  Y+KC G   N 
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKC-GDISNA 252

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           + +  +  K  +  WN++IS   +NG   +  ELF +MR    + D  T+  +  +   L
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            +  LGR VH   V S+F  D+S+N +L+ MYS L  LE+A+ +F +M  KD V W  MI
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI 372

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           ++      P +++E    M   G   D  T ++ +S+ + + +++ G ++H   ++ G  
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV 432

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V V NSLIDMY +C+ ++ A ++F ++  K VVSW+S+I G   +++S EAL  F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           K E ++ + VT+I++L AC  IGAL   K +H ++++ G+     +  AI   Y +CG  
Sbjct: 493 K-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRK 551

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
             A   F+ +K   KD+  WN +++ YA+ G      +L+ +M + ++ PD ITF+ LL 
Sbjct: 552 VPALNQFNSQK---KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLC 608

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC  +G+V EG   F  MK  Y   P+ +HYA +V++LGRAG +D+A + ++DMP +PDA
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +WG LL+AC++H   EL E+ A+++   + ++ G Y+LL N+YA  G W+ V+K+R+ +
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLM 728

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           R+RGL   PGCSW+EI   VH F + D SH Q+  I  +L
Sbjct: 729 RERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVL 768



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 231/445 (51%), Gaps = 9/445 (2%)

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G  E++ +  + M     E +    I LLR     ++ + G  V+ +   S  C  + + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            ALLSM+ +  +L DA  +F KMS++D   WN+++  Y ++G   E+L L   M+ +  R
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +++T  + + + + + +I  GK++HA+V+R G +  V V N+LI MY +C D++ AR +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  +  +SW++MI GY  +   LE L LFS M+   V+ D +T+  +  AC  +   
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              + +HGY +K       S+N ++   Y+  G +E A  +F   +++SKD+++W +MI+
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVF--SRMESKDVVSWTAMIA 373

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           +   H    +  + Y  M+   + PD IT + +L+AC   G ++ G I   E+    G  
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG-IRLHEIAIKTGLV 432

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                  S++++  +   +D A E+ +++  K +   W  L+   ++++ +  A L   +
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 632 LI-SMEPENAGNYVLLSNIYAAAGK 655
           +  SM+P    N V L ++ +A  +
Sbjct: 492 MKESMKP----NSVTLISVLSACAR 512



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 145/593 (24%), Positives = 268/593 (45%), Gaps = 61/593 (10%)

Query: 25  QTRPHMTATHSF-SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           + RP++   ++F S+L  C     +   ++IHA ++I  G   ++ + + LI  Y   G 
Sbjct: 193 EIRPNV---YTFPSVLKTCAGVSDIARGKEIHA-HVIRFGFESDVDVGNALITMYVKCGD 248

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           +S ++ +F+ +   + + +  ++    + G   + L ++  M   S+ P   T   V  +
Sbjct: 249 ISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASA 308

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C  L +   G  +H  VVK  F     + ++L++ Y       E E    + + KD+ S 
Sbjct: 309 CELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS- 367

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I+  V +    K+ E +K+M +EG   D  TL+++L +   +  L+LG  +H +A+
Sbjct: 368 WTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +     + V+ +L+ MYSK   +++A  +F  +S K+ V W  +I     +    E+L 
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL- 486

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L    ++   + +  T I+ +S+ + +  +  GK++HA+ LR G  +   + N+++DMY 
Sbjct: 487 LFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYV 546

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
            C     A   F+S K K V +W+ ++ GY    Q+  A+ LF +M    +  D +T I+
Sbjct: 547 RCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFIS 605

Query: 441 ILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC   G + E ++Y +    K  L       T     YA   C+             
Sbjct: 606 LLCACSKSGMVTEGLEYFNIMKNKYNL-------TPNLKHYA---CV------------- 642

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
             DI+            G   Q    Y  ++   +RPD   +  LL AC     VE G I
Sbjct: 643 -VDIL------------GRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI 689

Query: 560 ----IFKEMKESYGYEPSQEHYASMVNLLGRAGHMD---EARELVKDMPFKPD 605
               +F++  +S GY      Y  + NL    G+ D   + R L+++     D
Sbjct: 690 AAKRVFEKDNKSVGY------YILLCNLYAGCGNWDKVSKVRSLMRERGLSAD 736


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/640 (34%), Positives = 373/640 (58%), Gaps = 5/640 (0%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           L + L+  +   G L  +  VF  ++  +   +  ++   +K G +++ L +Y +M    
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           + P   T+P V+++C+ + D   G++IHA V++ GF+S  DVG+AL+  Y+KC G   N 
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKC-GDISNA 252

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           + +  +  K  +  WN++IS   +NG   +  ELF +MR    + D  T+  +  +   L
Sbjct: 253 RMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELL 312

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            +  LGR VH   V S+F  D+S+N +L+ MYS L  LE+A+ +F +M  KD V W  MI
Sbjct: 313 DNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMI 372

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           ++      P +++E    M   G   D  T ++ +S+ + + +++ G ++H   ++ G  
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLV 432

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V V NSLIDMY +C+ ++ A ++F ++  K VVSW+S+I G   +++S EAL  F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           K E ++ + VT+I++L AC  IGAL   K +H ++++ G+     +  AI   Y +CG  
Sbjct: 493 K-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRK 551

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
             A   F+ +K   KD+  WN +++ YA+ G      +L+ +M + ++ PD ITF+ LL 
Sbjct: 552 VPALNQFNSQK---KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLC 608

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC  +G+V EG   F  MK  Y   P+ +HYA +V++LGRAG +D+A + ++DMP +PDA
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +WG LL+AC++H   EL E+ A+++   + ++ G Y+LL N+YA  G W+ V+K+R+ +
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLM 728

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           R+RGL   PGCSW+EI   VH F + D SH Q+  I  +L
Sbjct: 729 RERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVL 768



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 231/445 (51%), Gaps = 9/445 (2%)

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G  E++ +  + M     E +    I LLR     ++ + G  V+ +   S  C  + + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            ALLSM+ +  +L DA  +F KMS++D   WN+++  Y ++G   E+L L   M+ +  R
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +++T  + + + + + +I  GK++HA+V+R G +  V V N+LI MY +C D++ AR +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  +  +SW++MI GY  +   LE L LFS M+   V+ D +T+  +  AC  +   
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              + +HGY +K       S+N ++   Y+  G +E A  +F   +++SKD+++W +MI+
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVF--SRMESKDVVSWTAMIA 373

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           +   H    +  + Y  M+   + PD IT + +L+AC   G ++ G I   E+    G  
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG-IRLHEIAIKTGLV 432

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                  S++++  +   +D A E+ +++  K +   W  L+   ++++ +  A L   +
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 632 LI-SMEPENAGNYVLLSNIYAAAGK 655
           +  SM+P    N V L ++ +A  +
Sbjct: 492 MKESMKP----NSVTLISVLSACAR 512



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 145/593 (24%), Positives = 268/593 (45%), Gaps = 61/593 (10%)

Query: 25  QTRPHMTATHSF-SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           + RP++   ++F S+L  C     +   ++IHA ++I  G   ++ + + LI  Y   G 
Sbjct: 193 EIRPNV---YTFPSVLKTCAGVSDIARGKEIHA-HVIRFGFESDVDVGNALITMYVKCGD 248

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           +S ++ +F+ +   + + +  ++    + G   + L ++  M   S+ P   T   V  +
Sbjct: 249 ISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASA 308

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C  L +   G  +H  VVK  F     + ++L++ Y       E E    + + KD+ S 
Sbjct: 309 CELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS- 367

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I+  V +    K+ E +K+M +EG   D  TL+++L +   +  L+LG  +H +A+
Sbjct: 368 WTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAI 427

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +     + V+ +L+ MYSK   +++A  +F  +S K+ V W  +I     +    E+L 
Sbjct: 428 KTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL- 486

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L    ++   + +  T I+ +S+ + +  +  GK++HA+ LR G  +   + N+++DMY 
Sbjct: 487 LFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYV 546

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
            C     A   F+S K K V +W+ ++ GY    Q+  A+ LF +M    +  D +T I+
Sbjct: 547 RCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFIS 605

Query: 441 ILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC   G + E ++Y +    K  L       T     YA   C+             
Sbjct: 606 LLCACSKSGMVTEGLEYFNIMKNKYNL-------TPNLKHYA---CV------------- 642

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
             DI+            G   Q    Y  ++   +RPD   +  LL AC     VE G I
Sbjct: 643 -VDIL------------GRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEI 689

Query: 560 ----IFKEMKESYGYEPSQEHYASMVNLLGRAGHMD---EARELVKDMPFKPD 605
               +F++  +S GY      Y  + NL    G+ D   + R L+++     D
Sbjct: 690 AAKRVFEKDNKSVGY------YILLCNLYAGCGNWDKVSKVRSLMRERGLSAD 736


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/718 (33%), Positives = 401/718 (55%), Gaps = 20/718 (2%)

Query: 5   LPPACSLQSGHVKFLR----FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHG 60
           +PP   + S H  FL      PAN    H  A     LL  C + + L+ I    I  +G
Sbjct: 14  IPP---ISSSHRHFLSQRNYIPAN-VYEHPAAL----LLERCSSLKELRHI-LPLIFKNG 64

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L+Q  +  + L+  +   G +  + +VF  I    ++LY T+LK  +K  + +K L  + 
Sbjct: 65  LYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFV 124

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIK 178
           +M    + P    + ++++ C    +   G++IH  +VK GF  D F   G  L   Y K
Sbjct: 125 RMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTG--LENMYAK 182

Query: 179 CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           C    E  K   +   +DL S WN++++   QNG +  + E+  LM  E  +    T+++
Sbjct: 183 CRQVHEARKVFDRMPERDLVS-WNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVS 241

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L +   L+ + +G+ +H  A+ + F   +++ TAL+ MY+K  SL+ A++LFD M +++
Sbjct: 242 VLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERN 301

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN MI AY Q+  PKE++ +   M+  G +    + + A+ + + + ++E G+ +H 
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHK 361

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +    D  VSV NSLI MYC+C++++ A  +F  ++++T+VSW++MI G+  + + +E
Sbjct: 362 LSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIE 421

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL  FS+M+   V+ D  T ++++ A   +    H K++HG  M+  L+    V TA+  
Sbjct: 422 ALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVD 481

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAKCG I +A  +FD   +  + + TWN+MI  Y  HG      +L+ +M++  +RP+ 
Sbjct: 482 MYAKCGAIMIARLIFD--MMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNG 539

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +TFL +++AC ++GLVE G   F  MKE+Y  EPS +HY +MV+LLGRAG ++EA + + 
Sbjct: 540 VTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIM 599

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MP KP   V+G +L AC++H     AE  AE+L  + PE+ G +VLL+NIY AA  W  
Sbjct: 600 QMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEK 659

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           V ++R  +  +GL+KTPGCS +EI   VH F++   +HP +  IY  L  L  +I E 
Sbjct: 660 VGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEA 717


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/691 (34%), Positives = 385/691 (55%), Gaps = 25/691 (3%)

Query: 37  SLLNLCENPQHLQQ-IHARYII-LHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+L LC   + ++     R II   G+  + IL   L+  Y   G L   + VF+ ++  
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
              L+  ++   S  G Y +++ ++KQM    + P   T+  +++  + +     G ++H
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 155 AQVVKLGFDSFDDVGDALVEFY-----IKCDGGFENEKGMIQRKFKDLKSR----WNSLI 205
             + KLGF+S++ V ++L+ FY     ++C           Q+ F +L  R    WNS+I
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRC----------AQKLFDELTDRDVISWNSMI 324

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV-VSDF 264
           S  V+NG  ++  E+F  M + G + D  T++N+  +   + +L LG+++H  ++  +  
Sbjct: 325 SGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATL 384

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
            +++  N  LL MYSK   L  A  +F++M +K  V W  MI+ Y + G    +++L   
Sbjct: 385 DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M   G   D++   + +++ +   N++ GK +H  +  N  +    V N+L DMY +C  
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGS 504

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  A  +F  +K K V+SW++MI GY  +    EAL LF+EM+ E  + D  T+  ILPA
Sbjct: 505 MKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPA 563

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C ++ AL+  + +HGY+++ G +    V  A+   Y KCG + +A  LFD   I +KD++
Sbjct: 564 CASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFD--MIPNKDLV 621

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +W  MI+ Y  HG  S+    + QM+ + + PD ++F+ +L AC ++GL++EG  IF  M
Sbjct: 622 SWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIM 681

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           K+    EP+ EHYA MV+LL R G++ +A + +K MP KPDA +WG LL  C++H + +L
Sbjct: 682 KKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKL 741

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           AE  AE++  +EPEN G YVLL+NIYA A KW  V K+R  +  RGLKK PGCSWIEI  
Sbjct: 742 AEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKG 801

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEIME 715
            ++ F A D S PQA  I  +L  L  ++ E
Sbjct: 802 KINIFVAGDCSKPQAKKIELLLKRLRSKMKE 832



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/414 (30%), Positives = 213/414 (51%), Gaps = 6/414 (1%)

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           + + FD G   ++L+   E KS+  GR V  +   S    D  +   L+ MY K   L++
Sbjct: 144 QNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKE 203

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            +M+FDK+S+    +WN+MIS Y  SG   ES+ L   M+  G + + +T  + +   + 
Sbjct: 204 GRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAA 263

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +  +E G+Q+H  + + G +   +V NSLI  Y     + CA+K+FD +  + V+SW+SM
Sbjct: 264 VARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSM 323

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG- 465
           I GYV +      + +F +M + GV++D  T++N+  AC NIG L   K LH YS+K   
Sbjct: 324 ISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAAT 383

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L+     N  +   Y+KCG +  A  +F  E++D K +++W SMI+ Y + G      KL
Sbjct: 384 LDREVRFNNTLLDMYSKCGDLNSAIRVF--ERMDEKTVVSWTSMITGYVREGLSDGAIKL 441

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +MK   V PD+     +L AC   G ++ G+I+   ++E+   E +     ++ ++  
Sbjct: 442 FDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLETNSFVSNALTDMYA 500

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS-ETELAELTAEKLISMEPE 638
           + G M +A ++   M  K D   W  ++     +S   E   L AE     +P+
Sbjct: 501 KCGSMKDAHDVFSHMK-KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPD 553


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/689 (34%), Positives = 386/689 (56%), Gaps = 17/689 (2%)

Query: 37  SLLNLCENPQHLQQIHA--RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+L LC + + L+       +I  +G   +  L S L   Y N G L  + +VF+ +   
Sbjct: 99  SVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIE 158

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
            +L +  ++  L+K G++  ++ ++K+M    +     T+  V +S S L     GE++H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLH 218

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSR----WNSLISLAV 209
             ++K GF   + VG++LV FY+K      N +    RK F ++  R    WNS+I+  V
Sbjct: 219 GYILKSGFGERNSVGNSLVAFYLK------NHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            NG +EK   +F  M   G E D  T++++     + + + LGR VHC  V + F ++  
Sbjct: 273 SNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDR 332

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
               LL MYSK   L+ AK++F +MS +  V +  MI+ Y + G   E+++L   M   G
Sbjct: 333 FCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D++T  A ++  +  + ++ GK++H  +  N   + + V N+L+DMY +C  +  A 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNI 448
            +F  ++ K ++SW+++I GY  +  + EAL LF+ + +E     D  T+  +LPAC ++
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            A +  + +HGY M+ G  S   V  ++   YAKCG + +A  LFD+  I SKD+++W  
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDD--ITSKDLVSWTV 570

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI+ Y  HG   +   L+ QM+Q+ + PD I+F+ LL AC ++GLV+EG   F  M+   
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
             EP+ EHYA +V++L R G++ +A   +++MP  PDA +WG LL  C++H + +LAE  
Sbjct: 631 KIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERV 690

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AEK+  +EPEN G YVL++NIYA A KW  V ++R  +  RGL+K PGCSWIEI   V+ 
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750

Query: 689 FWAADQSHPQADAIYTIL-GILELEIMEG 716
           F A D S+P+ + I   L G+    I EG
Sbjct: 751 FVAGDSSNPETEKIEAFLRGVRARMIEEG 779



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 213/396 (53%), Gaps = 7/396 (1%)

Query: 222 KLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           KL+ + G  + D  TL ++L+   + KSL+ G+ V      + F  D ++ + L  MY+ 
Sbjct: 82  KLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTN 141

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              L++A  +FD++  +  + WNI+++   +SG    S+ L   M+ SG   D +T    
Sbjct: 142 CGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
             S S+++++  G+Q+H  +L++G   + SV NSL+  Y +   ++ ARK+FD +  + V
Sbjct: 202 SKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDV 261

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           +SW+S+I GYV++  + + L +F +M   G+E+D  TI+++   C +   +   + +H +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCF 321

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            +K   +        +   Y+KCG ++ A  +F E  +  + ++++ SMI+ YA+ G   
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFRE--MSGRSVVSYTSMIAGYAREGLAG 379

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES-YGYEPSQEHYAS 579
           +  KL+ +M++  + PD+ T   +L  C    L++EG+ + + +KE+  G++    +  +
Sbjct: 380 EAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--A 437

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++++  + G M EA  +  +M  K D   W  ++  
Sbjct: 438 LMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGG 472


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/681 (33%), Positives = 388/681 (56%), Gaps = 8/681 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C + + L+QI    +  +GL+Q     + L+  +   G +  + +VF  I S  ++
Sbjct: 43  LLERCSSLKELRQI-LPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           LY T+LK  +K  + +K L  + +M    + P    + ++++ C    +   G++IH  +
Sbjct: 102 LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLL 161

Query: 158 VKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
           VK GF  D F   G  L   Y KC    E  K   +   +DL S WN++++   QNG + 
Sbjct: 162 VKSGFSLDLFAMTG--LENMYAKCRQVNEARKVFDRMPERDLVS-WNTIVAGYSQNGMAR 218

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
            + E+ K M  E  +    T++++L +   L+ + +G+ +H  A+ S F   ++++TAL+
Sbjct: 219 MALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALV 278

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K  SLE A+ LFD M +++ V WN MI AY Q+  PKE++ +   M+  G +    
Sbjct: 279 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 338

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           + + A+ + + + ++E G+ +H   +  G D  VSV NSLI MYC+C++++ A  +F  +
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           +++T+VSW++MI G+  + + ++AL  FS+M+   V+ D  T ++++ A   +    H K
Sbjct: 399 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           ++HG  M+  L+    V TA+   YAKCG I +A  +FD   +  + + TWN+MI  Y  
Sbjct: 459 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFD--MMSERHVTTWNAMIDGYGT 516

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG      +L+ +M++  ++P+ +TFL +++AC ++GLVE G   F  MKE+Y  E S +
Sbjct: 517 HGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMD 576

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY +MV+LLGRAG ++EA + +  MP KP   V+G +L AC++H     AE  AE+L  +
Sbjct: 577 HYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFEL 636

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
            P++ G +VLL+NIY AA  W  V ++R  +  +GL+KTPGCS +EI   VH F++   +
Sbjct: 637 NPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTA 696

Query: 696 HPQADAIYTILGILELEIMEG 716
           HP +  IY  L  L   I E 
Sbjct: 697 HPDSKKIYAFLEKLICHIKEA 717


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/689 (34%), Positives = 391/689 (56%), Gaps = 7/689 (1%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           TR +     S  LL  C + + L QI   +II +G +   +  + +I  +   G  S + 
Sbjct: 41  TRVYSHRHPSVVLLENCTSKKELYQI-LPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAA 99

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +VF  +     +LY  +LK  +K       L  + +M    +      Y  +++ C   L
Sbjct: 100 RVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENL 159

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSL 204
           D   G +IH  ++  GF+S   V  A++  Y KC    +N   M +R + KDL S W +L
Sbjct: 160 DLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQ-IDNAYKMFERMQHKDLVS-WTTL 217

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           ++   QNG ++++ +L   M+  G + DS TL+++L +  ++K+L +GR +H  A  S F
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF 277

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
              ++V  ALL MY K  S   A+++F  M  K  V WN MI    Q+G  +E+    + 
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+  G      T +  + + + + ++E G  +H  + +   D  VSV NSLI MY +C+ 
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           ++ A  IF++++ KT V+W++MI GY  +    EAL LF  M+ +G+++D  T++ ++ A
Sbjct: 398 VDIAASIFNNLE-KTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
             +       K++HG +++  +++   V+TA+   YAKCG I+ A +LFD   +  + +I
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFD--MMQERHVI 514

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           TWN+MI  Y  HG   +   L+ +M++  V+P+ ITFL +++AC ++G VEEG ++FK M
Sbjct: 515 TWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSM 574

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           +E Y  EP+ +HY++MV+LLGRAG +D+A   +++MP KP   V G +L ACK+H   EL
Sbjct: 575 QEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVEL 634

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            E  A+KL  ++P+  G +VLL+NIYA+   W+ VAK+RT + D+GL KTPGCSW+E+  
Sbjct: 635 GEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRN 694

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEI 713
            +H F++   +HP++  IY  L  L  EI
Sbjct: 695 EIHTFYSGSTNHPESKKIYAFLETLGDEI 723


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/687 (33%), Positives = 383/687 (55%), Gaps = 7/687 (1%)

Query: 30   MTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
            M  T   S+LN C   + L   + IH+ +I   G   ++ + ++LI  YA  G L  +++
Sbjct: 383  MNRTTYLSVLNACSTSKALGAGELIHS-HISEVGHSSDVQIGNSLISMYARCGDLPRARE 441

Query: 87   VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
            +FN++   + + +  I+   ++  +  + + +YKQM  + + P   T+  ++ +C+    
Sbjct: 442  LFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSA 501

Query: 147  FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
            +  G+ IH  +++ G  S   + +AL+  Y +C    E +      + +D+ S WNS+I+
Sbjct: 502  YSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS-WNSMIA 560

Query: 207  LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               Q+G  E +++LF  M+ EG E D  T  ++L      ++LELGR +H + + S    
Sbjct: 561  GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 267  DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
            D+++  AL++MY +  SL+DA  +F  +  ++ + W  MI  +   G  +++ EL   M 
Sbjct: 621  DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 327  RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
              GF+    T  + + +  +   ++ GK++ A++L +G +    V N+LI  Y +   + 
Sbjct: 681  NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT 740

Query: 387  CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
             ARK+FD +  + ++SW+ MI GY  +     AL+   +M+ +GV ++  + ++IL AC 
Sbjct: 741  DARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800

Query: 447  NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +  ALE  K +H   +K  +     V  A+   YAKCG +E A E+FD      K+++TW
Sbjct: 801  SFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFD--NFTEKNVVTW 858

Query: 507  NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            N+MI+AYA+HG  S+    +  M +  ++PD  TF  +L+AC ++GLV EG  IF  ++ 
Sbjct: 859  NAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLES 918

Query: 567  SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
             +G  P+ EHY  +V LLGRAG   EA  L+  MPF PDA VW  LL AC++H    LAE
Sbjct: 919  QHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAE 978

Query: 627  LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
              A   + +   N   YVLLSN+YAAAG+W+ VAK+R  +  RG++K PG SWIE+  ++
Sbjct: 979  HAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNII 1038

Query: 687  HEFWAADQSHPQADAIYTILGILELEI 713
            HEF AAD+SHP+   IY  L  L LE+
Sbjct: 1039 HEFIAADRSHPETAEIYEELKRLSLEM 1065



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 163/580 (28%), Positives = 306/580 (52%), Gaps = 11/580 (1%)

Query: 23  ANQTRPHMTATHSFSLLNLCENPQH------LQQIHARYIILHGLHQNLILSSNLIDSYA 76
           +N  +P  T T+  + ++L +N          ++IHA+ ++  G+  ++ LS+ LI+ Y 
Sbjct: 70  SNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQ-MVEAGVGPDIFLSNLLINMYV 128

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
               +S + QVF  +   + + + +++   ++ G  +K   ++++M      P++ TY  
Sbjct: 129 KCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYIS 188

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           ++ +C    +   G+KIH+++++ G+     V ++L+  Y KC+    + + +    ++ 
Sbjct: 189 ILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCED-LPSARQVFSGIYRR 247

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               +N+++ L  Q    E+   LF  M  EG   D  T INLL +      L+ G+ +H
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            +AV      D+ V TAL +M+ +   +  AK   +  +D+D VV+N +I+A  Q G  +
Sbjct: 308 KLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYE 367

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+ E    M   G   +  T ++ +++ ST K +  G+ +H+++   G    V + NSLI
Sbjct: 368 EAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLI 427

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY  C DL  AR++F+++  + ++SW+++I GY   +   EA++L+ +M+ EGV+   V
Sbjct: 428 SMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRV 487

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T +++L AC N  A    K +H   ++ G+ S   +  A+   Y +CG I  A  +F  E
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVF--E 545

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
              ++DII+WNSMI+ +A+HG +   +KL+ +MK+  + PD ITF  +L  C N   +E 
Sbjct: 546 GTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALEL 605

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           GR I   + ES G +       +++N+  R G + +A E+
Sbjct: 606 GRQIHMLIIES-GLQLDVNLGNALINMYIRCGSLQDAYEV 644



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 163/615 (26%), Positives = 316/615 (51%), Gaps = 14/615 (2%)

Query: 8   ACSLQSGHVK--FLRFPANQTRPHMTATHSF-SLLNLCENPQHLQ---QIHARYIILHGL 61
           +C  Q G  K  F  F   QT   + +  ++ S+L  C +P  L+   +IH++ II  G 
Sbjct: 156 SCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSK-IIEAGY 214

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
            ++  + ++L++ Y     L  ++QVF+ I   + + Y T+L   ++    E+ + ++ Q
Sbjct: 215 QRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQ 274

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M+ + + P + TY  ++ + +       G++IH   V  G +S   VG AL   +++C G
Sbjct: 275 MSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC-G 333

Query: 182 GFENEKGMIQRKFKDLKSR-WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
                K  ++  F D     +N+LI+   Q+G  E++FE +  MR +G   +  T +++L
Sbjct: 334 DVAGAKQALE-AFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +    K+L  G ++H          D+ +  +L+SMY++   L  A+ LF+ M  +D +
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLI 452

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN +I+ Y +     E+++L   M   G +    T +  +S+ +       GK +H ++
Sbjct: 453 SWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDI 512

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           LR+G      + N+L++MY  C  +  A+ +F+  + + ++SW+SMI G+  H     A 
Sbjct: 513 LRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAY 572

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           +LF EMK EG+E D +T  ++L  C N  ALE  + +H   ++ GL    ++  A+   Y
Sbjct: 573 KLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMY 632

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            +CG ++ A E+F    +  +++++W +MI  +A  G+  + F+L+ QM+    +P   T
Sbjct: 633 IRCGSLQDAYEVF--HSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKST 690

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           F  +L AC+++  ++EG+ +   +  S GYE       ++++   ++G M +AR++   M
Sbjct: 691 FSSILKACMSSACLDEGKKVIAHILNS-GYELDTGVGNALISAYSKSGSMTDARKVFDKM 749

Query: 601 PFKPDARVWGPLLSA 615
           P + D   W  +++ 
Sbjct: 750 PNR-DIMSWNKMIAG 763


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/685 (33%), Positives = 399/685 (58%), Gaps = 14/685 (2%)

Query: 37  SLLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+LN C + +++ +    Y  I+  G   +L + + LI+ +   G +  + +VF+++ + 
Sbjct: 216 SMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR 275

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + + +++  L++ G +++   ++++M  + + P +  +  ++R+C+       G+K+H
Sbjct: 276 DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVH 335

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           A++ ++G+D+   VG A++  Y KC G  E+   +    F  +K R    W ++I+   Q
Sbjct: 336 ARMKEVGWDTEIYVGTAILSMYTKC-GSMEDALEV----FDLVKGRNVVSWTAMIAGFAQ 390

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           +G+ +++F  F  M   G E +  T +++L +     +L+ G+ +    + + +  D  V
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV 450

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            TALLSMY+K  SL+DA  +F+K+S ++ V WN MI+AY Q      +L     +++ G 
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           + +  T  + ++   +  ++E GK +H  +++ G +  + V N+L+ M+  C DL  A+ 
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F+ +  + +VSW+++I G+V H ++  A   F  M+  G++ D +T   +L AC +  A
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   + LH    +   +    V T +   Y KCG IE A ++F   K+  K++ +W SMI
Sbjct: 631 LTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF--HKLPKKNVYSWTSMI 688

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           + YA+HG   +  +L+ QM+Q  V+PD ITF+G L+AC +AGL+EEG   F+ MKE +  
Sbjct: 689 TGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNI 747

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           EP  EHY  MV+L GRAG ++EA E +  M  +PD+RVWG LL AC++H   ELAE  A+
Sbjct: 748 EPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQ 807

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           K + ++P + G +V+LSNIYAAAG W  VAKMR  + DRG+ K PG SWIE+   VH F+
Sbjct: 808 KKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFY 867

Query: 691 AADQSHPQADAIYTILGILELEIME 715
           + D++HPQ + I+  L  L +E+ +
Sbjct: 868 SDDKTHPQTEEIHAELERLHMEMRQ 892



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/596 (26%), Positives = 314/596 (52%), Gaps = 17/596 (2%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL LC   ++L   ++I+  +I   G+  ++ + + LI+ YA  G    ++Q+F+ +  
Sbjct: 115 ALLQLCIKFKNLGDGERIY-NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMRE 173

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +   +  +L    + G YE+   +++QM   S+ P + T+  ++ +C+   +   G ++
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGREL 233

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           +  ++K G+D+   VG AL+  +IKC      + G   + F +L +R    W S+I+   
Sbjct: 234 YNLILKAGWDTDLFVGTALINMHIKC-----GDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++G+ +++  LF+ M  EG + D    ++LLR+    ++LE G+ VH       +  ++ 
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V TA+LSMY+K  S+EDA  +FD +  ++ V W  MI+ + Q G   E+      M+ SG
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              +  T ++ + + S+   ++ G+Q+  +++  G      V  +L+ MY +C  L  A 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F+ +  + VV+W++MI  YV H+Q   AL  F  +  EG++ +  T  +IL  C +  
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +LE  K++H   MK GL S   V+ A+   +  CG +  A  LF++  +  +D+++WN++
Sbjct: 529 SLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND--MPKRDLVSWNTI 586

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ + +HG     F  +  M++S ++PD ITF GLL AC +   + EGR +   + E+  
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA-A 645

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++        ++++  + G +++A ++   +P K +   W  +++    H   + A
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEA 700



 Score =  236 bits (601), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 274/525 (52%), Gaps = 7/525 (1%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +L  LSK G++ + + V +++    +     TY  +++ C    +   GE+I+  + K G
Sbjct: 81  VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSG 140

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
                 + + L+  Y KC      ++     + KD+ S WN L+   VQ+G  E++F+L 
Sbjct: 141 VQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYS-WNLLLGGYVQHGLYEEAFKLH 199

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M  +  + D  T +++L +  + ++++ GR ++ + + + +  DL V TAL++M+ K 
Sbjct: 200 EQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKC 259

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             + DA  +FD +  +D V W  MI+   + G  K++  L   M   G + D    ++ +
Sbjct: 260 GDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLL 319

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + +  + +E GK++HA +   G D ++ V  +++ MY +C  +  A ++FD VK + VV
Sbjct: 320 RACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVV 379

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW++MI G+  H +  EA   F++M   G+E + VT ++IL AC +  AL+  + +  + 
Sbjct: 380 SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHI 439

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           ++ G  S   V TA+   YAKCG ++ A  +F  EKI  ++++ WN+MI+AY +H  +  
Sbjct: 440 IEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF--EKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII-FKEMKESYGYEPSQEHYASM 580
               +  + +  ++P+  TF  +L  C ++  +E G+ + F  MK   G E       ++
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNAL 555

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           V++    G +  A+ L  DMP K D   W  +++    H + ++A
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 256/472 (54%), Gaps = 14/472 (2%)

Query: 194 FKDLK--SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           F D+K   + N++++   + G+  ++ ++ + +     +    T   LL+  ++ K+L  
Sbjct: 69  FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  ++     S    D+ +   L++MY+K  +   AK +FD M +KD   WN+++  Y Q
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
            G  +E+ +L   MV+   + D  T ++ +++ +  +N++ G++++  +L+ G D  + V
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +LI+M+ +C D+  A K+FD++ T+ +V+W+SMI G   H +  +A  LF  M+ EGV
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D V  +++L AC +  ALE  K +H    ++G ++   V TAI   Y KCG +E A E
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FD   +  +++++W +MI+ +A+HG   + F  + +M +S + P+ +TF+ +L AC + 
Sbjct: 369 VFD--LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             ++ G+ I   + E+ GY        +++++  + G + +A  + + +  K +   W  
Sbjct: 427 SALKRGQQIQDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNA 484

Query: 612 LLSACKMHSETELAELTAEKLI--SMEPENAGNYVLLSNIYAAA-----GKW 656
           +++A   H + + A  T + L+   ++P N+  +  + N+  ++     GKW
Sbjct: 485 MITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKW 535


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/685 (33%), Positives = 399/685 (58%), Gaps = 14/685 (2%)

Query: 37  SLLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+LN C + +++ +    Y  I+  G   +L + + LI+ +   G +  + +VF+++ + 
Sbjct: 216 SMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR 275

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + + +++  L++ G +++   ++++M  + + P +  +  ++R+C+       G+K+H
Sbjct: 276 DLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVH 335

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           A++ ++G+D+   VG A++  Y KC G  E+   +    F  +K R    W ++I+   Q
Sbjct: 336 ARMKEVGWDTEIYVGTAILSMYTKC-GSMEDALEV----FDLVKGRNVVSWTAMIAGFAQ 390

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           +G+ +++F  F  M   G E +  T +++L +     +L+ G+ +    + + +  D  V
Sbjct: 391 HGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV 450

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            TALLSMY+K  SL+DA  +F+K+S ++ V WN MI+AY Q      +L     +++ G 
Sbjct: 451 RTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGI 510

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           + +  T  + ++   +  ++E GK +H  +++ G +  + V N+L+ M+  C DL  A+ 
Sbjct: 511 KPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F+ +  + +VSW+++I G+V H ++  A   F  M+  G++ D +T   +L AC +  A
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   + LH    +   +    V T +   Y KCG IE A ++F   K+  K++ +W SMI
Sbjct: 631 LTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF--HKLPKKNVYSWTSMI 688

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           + YA+HG   +  +L+ QM+Q  V+PD ITF+G L+AC +AGL+EEG   F+ MKE +  
Sbjct: 689 AGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNI 747

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           EP  EHY  MV+L GRAG ++EA E +  M  +PD+RVWG LL AC++H   ELAE  A+
Sbjct: 748 EPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQ 807

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           K + ++P + G +V+LSNIYAAAG W  VAKMR  + DRG+ K PG SWIE+   VH F+
Sbjct: 808 KKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFY 867

Query: 691 AADQSHPQADAIYTILGILELEIME 715
           + D++HPQ + I+  L  L +E+ +
Sbjct: 868 SDDKTHPQTEEIHAELERLHMEMRQ 892



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/596 (26%), Positives = 314/596 (52%), Gaps = 17/596 (2%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL LC   ++L   ++I+  +I   G+  ++ + + LI+ YA  G    ++Q+F+ +  
Sbjct: 115 ALLQLCIKFKNLGDGERIY-NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMRE 173

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +   +  +L    + G YE+   +++QM   S+ P + T+  ++ +C+   +   G ++
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGREL 233

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           +  ++K G+D+   VG AL+  +IKC      + G   + F +L +R    W S+I+   
Sbjct: 234 YNLILKAGWDTDLFVGTALINMHIKC-----GDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++G+ +++  LF+ M  EG + D    ++LLR+    ++LE G+ VH       +  ++ 
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIY 348

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V TA+LSMY+K  S+EDA  +FD +  ++ V W  MI+ + Q G   E+      M+ SG
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              +  T ++ + + S+   ++ G+Q+  +++  G      V  +L+ MY +C  L  A 
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F+ +  + VV+W++MI  YV H+Q   AL  F  +  EG++ +  T  +IL  C +  
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSD 528

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +LE  K++H   MK GL S   V+ A+   +  CG +  A  LF++  +  +D+++WN++
Sbjct: 529 SLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND--MPKRDLVSWNTI 586

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ + +HG     F  +  M++S ++PD ITF GLL AC +   + EGR +   + E+  
Sbjct: 587 IAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA-A 645

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++        ++++  + G +++A ++   +P K +   W  +++    H   + A
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEA 700



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 274/526 (52%), Gaps = 7/526 (1%)

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
            +L  LSK G++ + + V +++    +     TY  +++ C    +   GE+I+  + K 
Sbjct: 80  AVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKS 139

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           G      + + L+  Y KC      ++     + KD+ S WN L+   VQ+G  E++F+L
Sbjct: 140 GVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYS-WNLLLGGYVQHGLYEEAFKL 198

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
            + M  +  + D  T +++L +  + ++++ GR ++ + + + +  DL V TAL++M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              + DA  +FD +  +D V W  MI+   + G  K++  L   M   G + D    ++ 
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + +  + +E GK++HA +   G D ++ V  +++ MY +C  +  A ++FD VK + V
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW++MI G+  H +  EA   F++M   G+E + VT ++IL AC +  AL+  + +  +
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            ++ G  S   V TA+   YAKCG ++ A  +F  EKI  ++++ WN+MI+AY +H  + 
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF--EKISKQNVVAWNAMITAYVQHEQYD 496

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII-FKEMKESYGYEPSQEHYAS 579
                +  + +  ++P+  TF  +L  C ++  +E G+ + F  MK   G E       +
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNA 554

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +V++    G +  A+ L  DMP K D   W  +++    H + ++A
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 256/472 (54%), Gaps = 14/472 (2%)

Query: 194 FKDLK--SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           F D+K   + N++++   + G+  ++ ++ + +     +    T   LL+  ++ K+L  
Sbjct: 69  FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  ++     S    D+ +   L++MY+K  +   AK +FD M +KD   WN+++  Y Q
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
            G  +E+ +L   MV+   + D  T ++ +++ +  +N++ G++++  +L+ G D  + V
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +LI+M+ +C D+  A K+FD++ T+ +V+W+SMI G   H +  +A  LF  M+ EGV
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D V  +++L AC +  ALE  K +H    ++G ++   V TAI   Y KCG +E A E
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FD   +  +++++W +MI+ +A+HG   + F  + +M +S + P+ +TF+ +L AC + 
Sbjct: 369 VFD--LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             ++ G+ I   + E+ GY        +++++  + G + +A  + + +  K +   W  
Sbjct: 427 SALKRGQQIQDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNA 484

Query: 612 LLSACKMHSETELAELTAEKLI--SMEPENAGNYVLLSNIYAAA-----GKW 656
           +++A   H + + A  T + L+   ++P N+  +  + N+  ++     GKW
Sbjct: 485 MITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCKSSDSLELGKW 535


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/685 (35%), Positives = 382/685 (55%), Gaps = 17/685 (2%)

Query: 37   SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            S+L LC   + LQ+   +H+  I  +G+    +L + L+  Y + G L   +++F+ I S
Sbjct: 456  SILQLCAEHKCLQEGKMVHS-VISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILS 514

Query: 94   PNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + L+  ++   +K G+Y +++ ++K+M    +     T+  +++  + L      ++
Sbjct: 515  DNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKR 574

Query: 153  IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
            IH  V KLGF S++ V ++L+  Y K       E     + F +L  R    WNS+IS  
Sbjct: 575  IHGCVYKLGFGSYNTVVNSLIATYFK-----SGEVDSAHKLFDELGDRDVVSWNSMISGC 629

Query: 209  VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            V NG S  + E F  M +     D  TL+N + +   + SL LGR +H   V + F +++
Sbjct: 630  VMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREV 689

Query: 269  SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
              N  LL MYSK  +L DA   F+KM  K  V W  +I+AY + G   +++ L   M   
Sbjct: 690  MFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESK 749

Query: 329  GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
            G   D+++  + + + +   +++ G+ +H  + +N     + V N+L+DMY +C  +  A
Sbjct: 750  GVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEA 809

Query: 389  RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
              +F  +  K +VSW++MI GY  +    EAL+LF+EM+ E    D +T+  +LPAC ++
Sbjct: 810  YLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSL 868

Query: 449  GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             ALE  + +HG  ++ G +S   V  A+   Y KCG +  A  LFD   I  KD+ITW  
Sbjct: 869  AALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFD--MIPEKDLITWTV 926

Query: 509  MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
            MIS    HG  ++    + +M+ + ++PD ITF  +L AC ++GL+ EG   F  M    
Sbjct: 927  MISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISEC 986

Query: 569  GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
              EP  EHYA MV+LL R G++ +A  L++ MP KPDA +WG LL  C++H + ELAE  
Sbjct: 987  NMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKV 1046

Query: 629  AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
            AE +  +EP+NAG YVLL+NIYA A KW  V K+R  +  RGLKK+PGCSWIE+      
Sbjct: 1047 AEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTT 1106

Query: 689  FWAADQSHPQADAIYTILGILELEI 713
            F +AD +HPQA +I+++L  L +++
Sbjct: 1107 FVSADTAHPQAKSIFSLLNNLRIKM 1131



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 153/506 (30%), Positives = 258/506 (50%), Gaps = 15/506 (2%)

Query: 132 DTYPFVIRSCS---CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           + Y  +++ C+   CL +   G+ +H+ +   G      +G  LV  Y+ C G     + 
Sbjct: 452 NAYSSILQLCAEHKCLQE---GKMVHSVISSNGIPIEGVLGAKLVFMYVSC-GALREGRR 507

Query: 189 MIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
           +      D K   WN ++S   + G   +S  LFK M+  G   +S T   +L+    L 
Sbjct: 508 IFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLG 567

Query: 248 SL-ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            + E  RI  CV  +  F    +V  +L++ Y K   ++ A  LFD++ D+D V WN MI
Sbjct: 568 RVGECKRIHGCVYKLG-FGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMI 626

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S    +GF   +LE  + M+      DL T + +V++ + + ++  G+ +H   ++    
Sbjct: 627 SGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFS 686

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
            +V  +N+L+DMY +C +LN A + F+ +  KTVVSW+S+I  YV      +A+RLF EM
Sbjct: 687 REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           + +GV  D  ++ ++L AC    +L+  + +H Y  K  +     V+ A+   YAKCG +
Sbjct: 747 ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSM 806

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           E A  +F +  I  KDI++WN+MI  Y+K+   ++  KL+ +M Q + RPD IT   LL 
Sbjct: 807 EEAYLVFSQ--IPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLP 863

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC +   +E GR I   +  + GY        +++++  + G +  AR L+ DM  + D 
Sbjct: 864 ACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHAR-LLFDMIPEKDL 921

Query: 607 RVWGPLLSACKMHSETELAELTAEKL 632
             W  ++S C MH     A  T +K+
Sbjct: 922 ITWTVMISGCGMHGLGNEAIATFQKM 947



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 219/435 (50%), Gaps = 9/435 (2%)

Query: 222 KLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           +L+RM + +E D     ++L+   E K L+ G++VH V   +    +  +   L+ MY  
Sbjct: 439 ELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVS 498

Query: 281 LASLEDAKMLFDK-MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
             +L + + +FD  +SD    +WN+M+S Y + G  +ES+ L   M + G   + +T   
Sbjct: 499 CGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSC 558

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            +   +T+  +   K++H  V + G     +V NSLI  Y +  +++ A K+FD +  + 
Sbjct: 559 ILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRD 618

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           VVSW+SMI G V +  S  AL  F +M +  V VD  T++N + AC N+G+L   + LHG
Sbjct: 619 VVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHG 678

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             +K   +     N  +   Y+KCG +  A + F  EK+  K +++W S+I+AY + G +
Sbjct: 679 QGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAF--EKMGQKTVVSWTSLIAAYVREGLY 736

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
               +L+ +M+   V PD+ +   +L AC     +++GR +   ++++           +
Sbjct: 737 DDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKN-NMALCLPVSNA 795

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           ++++  + G M+EA  +   +P K D   W  ++     +S+  L     +    M+ E+
Sbjct: 796 LMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG---YSKNSLPNEALKLFAEMQKES 851

Query: 640 AGNYVLLSNIYAAAG 654
             + + ++ +  A G
Sbjct: 852 RPDGITMACLLPACG 866


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/652 (36%), Positives = 372/652 (57%), Gaps = 11/652 (1%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + +I SY N+G L  ++++F+  +  +S+ + +I+    KFG   +   +++ M L+   
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWK 159

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE-- 186
            ++ T   V+R CS L    +GE IH  VVK GF+    V   LV+ Y KC    E E  
Sbjct: 160 ASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFL 219

Query: 187 -KGM-IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            KG+   RK   L   W ++++   QNG   K+ E F+ M  +G E +  T   +L +  
Sbjct: 220 FKGLEFDRKNHVL---WTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS 276

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            + +   G  VH   V S F  ++ V +AL+ MY+K   L++AK + + M D D V WN 
Sbjct: 277 SVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNS 336

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++  + + G  +E+L L   M     + D +T   +V +   + +I   K +H  +++ G
Sbjct: 337 LMVGFVRHGLEEEALRLFKNMHGRNMKIDDYT-FPSVLNCCVVGSIN-PKSVHGLIIKTG 394

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            +    V N+L+DMY +  D++CA  +F+ +  K V+SW+S++ GY  ++   E+L++F 
Sbjct: 395 FENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFC 454

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +M++ GV  D   + +IL AC  +  LE  K +H   +K GL    SV  ++   YAKCG
Sbjct: 455 DMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCG 514

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
           C++ A  +F   ++  KD+ITW ++I  YA++G      K Y  M  S  RPD ITF+GL
Sbjct: 515 CLDDADAIFVSMQV--KDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGL 572

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC +AGLV+EGR  F++M + YG +P  EHYA M++L GR+G +DEA++L+  M  KP
Sbjct: 573 LFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKP 632

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           DA VW  LLSAC++H   ELAE  A  L  +EP NA  YV+LSN+Y+A+ KWN VAK+R 
Sbjct: 633 DATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRK 692

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
            ++ +G+ K PGCSW+EI   V+ F + D+ HP+   IYT +  + L I E 
Sbjct: 693 LMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEA 744



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 254/486 (52%), Gaps = 11/486 (2%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI-- 91
           S+L +C +   +Q    IH  +++ +G   N+ + + L+D YA    +S ++ +F  +  
Sbjct: 167 SVLRVCSSLGLIQTGEMIHG-FVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEF 225

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              N +L+  ++   ++ G+  K +  ++ M  Q +   + T+P ++ +CS +L    GE
Sbjct: 226 DRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGE 285

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H  +VK GF S   V  ALV+ Y KC G  +N K M++    D    WNSL+   V++
Sbjct: 286 QVHGFIVKSGFGSNVYVQSALVDMYAKC-GDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G  E++  LFK M     + D  T  ++L   V + S+   + VH + + + F     V+
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVS 402

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL+ MY+K   ++ A  +F+KM +KD + W  +++ Y Q+   +ESL++   M  +G  
Sbjct: 403 NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVN 462

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D F   + +S+ + +  +E+GKQ+H + +++G  +  SV+NSL+ MY +C  L+ A  I
Sbjct: 463 PDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAI 522

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F S++ K V++W+++I GY  + +   +L+ +  M   G   DF+T I +L AC + G +
Sbjct: 523 FVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLV 582

Query: 452 -EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
            E  KY    +   G+         +   + + G ++ A +L D+  +   D   W S++
Sbjct: 583 DEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDV-KPDATVWKSLL 641

Query: 511 SAYAKH 516
           SA   H
Sbjct: 642 SACRVH 647



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 181/378 (47%), Gaps = 45/378 (11%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ---------------------- 311
           LL+  SK   + DA+ LFDKM  KD   WN MIS+Y                        
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW 130

Query: 312 ----SGFPK-----ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
               SG+ K     E+ +L   M   G++A  FT  + +   S++  I+ G+ +H  V++
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVK 190

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEAL 420
           NG +  V V   L+DMY +C+ ++ A  +F  ++   K  V W++M+ GY  +    +A+
Sbjct: 191 NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAV 250

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
             F  M  +GVE +  T   IL AC ++ A    + +HG+ +K G  S   V +A+   Y
Sbjct: 251 EFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMY 310

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           AKCG ++ A  +   E ++  D+++WNS++  + +HG   +  +L+  M   +++ D  T
Sbjct: 311 AKCGDLKNAKNML--ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYT 368

Query: 541 FLGLLTACVNAGLVEE---GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
           F  +L  CV   +  +   G II        G+E  +    ++V++  + G MD A  + 
Sbjct: 369 FPSVLNCCVVGSINPKSVHGLII------KTGFENYKLVSNALVDMYAKTGDMDCAYTVF 422

Query: 598 KDMPFKPDARVWGPLLSA 615
           + M  + D   W  L++ 
Sbjct: 423 EKM-LEKDVISWTSLVTG 439



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 185/373 (49%), Gaps = 14/373 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H  +I+  G   N+ + S L+D YA  G L  ++ +  ++   + + + +++    +
Sbjct: 285 EQVHG-FIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVR 343

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L ++K M  ++M   + T+P V+    C++  I+ + +H  ++K GF+++  V
Sbjct: 344 HGLEEEALRLFKNMHGRNMKIDDYTFPSVLN--CCVVGSINPKSVHGLIIKTGFENYKLV 401

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +ALV+ Y K  G  +    + ++  +     W SL++   QN   E+S ++F  MR+ G
Sbjct: 402 SNALVDMYAK-TGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG 460

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D   + ++L +  EL  LE G+ VH   + S      SV  +L++MY+K   L+DA 
Sbjct: 461 VNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDAD 520

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F  M  KD + W  +I  Y Q+G  + SL+    MV SG R D  T I  + + S   
Sbjct: 521 AIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAG 580

Query: 349 NIEWGKQMHANV-----LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVS 402
            ++ G++    +     ++ G ++    +  +ID++     L+ A+++ D +  K     
Sbjct: 581 LVDEGRKYFQQMNKVYGIKPGPEH----YACMIDLFGRSGKLDEAKQLLDQMDVKPDATV 636

Query: 403 WSSMIKGYVTHDQ 415
           W S++     H+ 
Sbjct: 637 WKSLLSACRVHEN 649



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 33/284 (11%)

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ----------------- 415
           N L++   +   +N ARK+FD +  K   SW++MI  YV   +                 
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 416 --------------SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
                          +EA  LF  M+LEG +    T+ ++L  C ++G ++  + +HG+ 
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K G      V T +   YAKC C+  A  LF   + D K+ + W +M++ YA++GD  +
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             + +  M    V  +  TF  +LTAC +      G  +   + +S G+  +    +++V
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALV 307

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++  + G +  A+ +++ M    D   W  L+     H   E A
Sbjct: 308 DMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHGLEEEA 350


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/687 (34%), Positives = 384/687 (55%), Gaps = 16/687 (2%)

Query: 37  SLLNLCENPQHLQQIHA--RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+L LC + + L+       +I  +G   +  L S L   Y N G L  + +VF+ +   
Sbjct: 99  SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
            +L +  ++  L+K G++  ++ ++K+M    +     T+  V +S S L     GE++H
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLH 218

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSR----WNSLISLAV 209
             ++K GF   + VG++LV FY+K      N++    RK F ++  R    WNS+I+  V
Sbjct: 219 GFILKSGFGERNSVGNSLVAFYLK------NQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            NG +EK   +F  M + G E D  T++++     + + + LGR VH + V + F ++  
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
               LL MYSK   L+ AK +F +MSD+  V +  MI+ Y + G   E+++L   M   G
Sbjct: 333 FCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D++T  A ++  +  + ++ GK++H  +  N   + + V N+L+DMY +C  +  A 
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNI 448
            +F  ++ K ++SW+++I GY  +  + EAL LF+ +  E     D  T+  +LPAC ++
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            A +  + +HGY M+ G  S   V  ++   YAKCG + +A  LFD+  I SKD+++W  
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD--IASKDLVSWTV 570

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI+ Y  HG   +   L+ QM+Q+ +  D I+F+ LL AC ++GLV+EG   F  M+   
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
             EP+ EHYA +V++L R G + +A   +++MP  PDA +WG LL  C++H + +LAE  
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AEK+  +EPEN G YVL++NIYA A KW  V ++R  +  RGL+K PGCSWIEI   V+ 
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750

Query: 689 FWAADQSHPQADAIYTILGILELEIME 715
           F A D S+P+ + I   L  +   ++E
Sbjct: 751 FVAGDSSNPETENIEAFLRKVRARMIE 777



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 214/396 (54%), Gaps = 7/396 (1%)

Query: 222 KLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           KL+ + G  + D  TL ++L+   + KSL+ G+ V      + F  D ++ + L  MY+ 
Sbjct: 82  KLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTN 141

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              L++A  +FD++  +  + WNI+++   +SG    S+ L   M+ SG   D +T    
Sbjct: 142 CGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
             S S+++++  G+Q+H  +L++G   + SV NSL+  Y + + ++ ARK+FD +  + V
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           +SW+S+I GYV++  + + L +F +M + G+E+D  TI+++   C +   +   + +H  
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 321

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            +K   +        +   Y+KCG ++ A  +F E  +  + ++++ SMI+ YA+ G   
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE--MSDRSVVSYTSMIAGYAREGLAG 379

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES-YGYEPSQEHYAS 579
           +  KL+ +M++  + PD+ T   +L  C    L++EG+ + + +KE+  G++    +  +
Sbjct: 380 EAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--A 437

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++++  + G M EA  +  +M  K D   W  ++  
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/683 (32%), Positives = 390/683 (57%), Gaps = 15/683 (2%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + L   +Q+H  +I+  G+  N+ + + L+  Y + G ++ ++++F+  ++ 
Sbjct: 50  LLQSCVKAKDLAVGKQVH-EHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNK 108

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   +  G  ++   ++  M  + + P + T+  ++ +CS       G ++H
Sbjct: 109 SVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVH 168

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
            +V++ G  +   VG+AL+  Y KC G   + +    R F  + SR    W +L     +
Sbjct: 169 VRVMEAGLANNATVGNALISMYAKC-GSVRDAR----RVFDAMASRDEVSWTTLTGAYAE 223

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           +G +++S + +  M  EG      T +N+L +   L +LE G+ +H   V S+   D+ V
Sbjct: 224 SGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRV 283

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           +TAL  MY K  +++DA+ +F+ + ++D + WN MI     SG  +E+  +   M++   
Sbjct: 284 STALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECV 343

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D  T +A +S+ +    +  GK++HA  +++G    V   N+LI+MY +   +  AR+
Sbjct: 344 APDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQ 403

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD +  + VVSW++++ GY    Q +E+   F +M  +GVE + +T + +L AC N  A
Sbjct: 404 VFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVA 463

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+  K +H   +K G+ +  +V  A+   Y KCG +E A  +   E + ++D++TWN++I
Sbjct: 464 LKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV--SEGMSTRDVVTWNTLI 521

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
              A++G   +  + +  MK  ++RP+  TF+ +++AC    LVEEGR  F  M++ YG 
Sbjct: 522 GGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGI 581

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
            P+++HYA MV++L RAGH+ EA +++  MPFKP A +WG LL+AC+ H   E+ E  AE
Sbjct: 582 VPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAE 641

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           + + +EP+NAG YV LS IYAAAG W  VAK+R  +++RG+KK PG SWIE+   VH F 
Sbjct: 642 QCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFV 701

Query: 691 AADQSHPQADAIYTILGILELEI 713
           A DQSHP+ + IY+ L  L  +I
Sbjct: 702 AGDQSHPRTEEIYSELEALTKQI 724



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/437 (31%), Positives = 234/437 (53%), Gaps = 9/437 (2%)

Query: 132 DTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
           D+Y +V  ++SC    D   G+++H  +++ G      + + L++ Y+ C  G  NE   
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHC--GSVNEARR 100

Query: 190 IQRKFKDLKS--RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
           +  KF + KS   WN +IS     G  +++F LF LM+ EG E D  T +++L +     
Sbjct: 101 LFDKFSN-KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L  GR VH   + +    + +V  AL+SMY+K  S+ DA+ +FD M+ +D V W  +  
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           AY +SG+ +ESL+    M++ G R    T +  +S+  ++  +E GKQ+HA ++ +    
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS 279

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            V V  +L  MY +C  +  AR++F+ +  + V++W++MI G V   Q  EA  +F  M 
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            E V  D VT + IL AC   G L   K +H  ++K GL S      A+   Y+K G ++
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMK 399

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A ++FD  ++  +D+++W +++  YA  G   + F  + +M Q  V  + IT++ +L A
Sbjct: 400 DARQVFD--RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKA 457

Query: 548 CVNAGLVEEGRIIFKEM 564
           C N   ++ G+ I  E+
Sbjct: 458 CSNPVALKWGKEIHAEV 474



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 16/302 (5%)

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           ++L  + + G + D +  +  + S    K++  GKQ+H ++LR G    V + N+L+ +Y
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
             C  +N AR++FD    K+VVSW+ MI GY       EA  LF+ M+ EG+E D  T +
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +IL AC +  AL   + +H   M+ GL + ++V  A+   YAKCG +  A  +FD   + 
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD--AMA 207

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           S+D ++W ++  AYA+ G   +  K Y  M Q  VRP  IT++ +L+AC +   +E+G+ 
Sbjct: 208 SRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQ 267

Query: 560 IFKEMKESYGYEPSQEHYA------SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           I  ++ ES       EH++      ++  +  + G + +ARE+ + +P + D   W  ++
Sbjct: 268 IHAQIVES-------EHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR-DVIAWNTMI 319

Query: 614 SA 615
             
Sbjct: 320 GG 321


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/654 (34%), Positives = 379/654 (57%), Gaps = 13/654 (1%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           +S+ LID Y+  G + ++++VF+ +   + + +GT++   +  G + + L ++ +M L +
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           +   + +      + +  +D   G++IH   ++   DS   V   L+  Y KC    E E
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG---ETE 381

Query: 187 KGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           K   ++ F  L+ R    W+++I+  VQ G  E++  LF+ M+ +  + +  TL+++L +
Sbjct: 382 KA--KQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPA 439

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             +L  L+LG+ +HC  V +D   DLS  TAL+SMY+K      A   F++MS +D V W
Sbjct: 440 CADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTW 499

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N +I+ Y Q G P  ++++   +  S    D  T +  V + + + +++ G  +H  +++
Sbjct: 500 NSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK 559

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALR 421
            G +    V N+LIDMY +C  L  A  +F+    TK  V+W+ +I  Y+ +  + EA+ 
Sbjct: 560 LGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAIS 619

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F +M+LE    + VT +++LPA   + A       H   +++G  S + V  ++   YA
Sbjct: 620 SFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYA 679

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG ++ + +LF+E  +D KD ++WN+M+S YA HG   +   L++ M++S V+ D ++F
Sbjct: 680 KCGQLDYSEKLFNE--MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSF 737

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC +AGLVEEGR IF  M + Y  +P  EHYA MV+LLGRAG  DE    +K MP
Sbjct: 738 VSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 797

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +PDA VWG LL +C+MHS  +L E+  + L+ +EP N  ++V+LS+IYA +G+W    K
Sbjct: 798 VEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGK 857

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            R+ + D GLKKTPGCSW+E+   VH F   D+SHPQ ++++ +   L LE ME
Sbjct: 858 ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL-LEKME 910



 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/636 (26%), Positives = 331/636 (52%), Gaps = 14/636 (2%)

Query: 21  FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           FP+  +  +    H   LL+ C++   L QIHA+ I+    H + I  ++LI+ Y+    
Sbjct: 21  FPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI--THLINLYSLFHK 78

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
             L++ VF+S  +P+ +L+ ++++  ++  +Y + L +Y  M  + + P + T+ FV+++
Sbjct: 79  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+  L+   G   H ++ + G +    +G  LV+ Y K  G  +  + +  +  K     
Sbjct: 139 CTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM-GDLKRAREVFDKMPKRDVVA 197

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I+   Q+    ++ + F+ M++ G E  S +L+NL     +L ++EL R +H    
Sbjct: 198 WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             DF    +V+  L+ +YSK   ++ A+ +FD+M D+D V W  M++ Y  +G   E LE
Sbjct: 258 RRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M     R +  +A++A  + +   ++E GK++H   L+   D  + V   L+ MY 
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYA 375

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C +   A+++F  ++ + +V+WS++I   V      EAL LF EM+ + ++ + VT+++
Sbjct: 376 KCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMS 435

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           ILPAC ++  L+  K +H +++K  ++S  S  TA+   YAKCG    A   F+  ++ S
Sbjct: 436 ILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFN--RMSS 493

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +DI+TWNS+I+ YA+ GD      ++ +++ S + PD  T +G++ AC     +++G  I
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM-- 618
              + +  G+E       +++++  + G +  A  L     F  D   W  +++A     
Sbjct: 554 HGLIVK-LGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNG 612

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           H++  ++     +L +  P    N V   ++  AA 
Sbjct: 613 HAKEAISSFHQMRLENFHP----NSVTFVSVLPAAA 644



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 177/349 (50%), Gaps = 8/349 (2%)

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLL---RSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            +SF        E     S T  N L   R     K L     +H   +VS F    S+ 
Sbjct: 8   RRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI- 66

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T L+++YS     + A+ +FD   +  R++WN MI AY +S    E+LE+  CMV  G  
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D +T    + + +   N++ G   H  + R G +  V +   L+DMY +  DL  AR++
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  + VV+W++MI G    +   EA+  F  M+L GVE   V+++N+ P    +  +
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI 246

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E  + +HGY  +   +  S+V+  +   Y+KCG +++A  +FD+  +  +D ++W +M++
Sbjct: 247 ELCRSIHGYVFRRDFS--SAVSNGLIDLYSKCGDVDVARRVFDQ--MVDQDDVSWGTMMA 302

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            YA +G + +  +L+ +MK  +VR + ++ +    A      +E+G+ I
Sbjct: 303 GYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/659 (34%), Positives = 370/659 (56%), Gaps = 3/659 (0%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +II  G   N+   + LI  ++  G +  ++Q F+S+ +   + +  I+   ++ G  ++
Sbjct: 86  HIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKE 145

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
              +++QM  ++M P+  T+  V+ +CS       G++ HAQV+K+GF S   +G ALV 
Sbjct: 146 AFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVS 205

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+K  G  +  + +    +K   S +N +I    ++G  EK+F+LF  M+ EG + +  
Sbjct: 206 MYVK-GGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRI 264

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           + +++L      ++L  G+ VH   + +    D+ V TAL+ MY    S+E A+ +FDKM
Sbjct: 265 SFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKM 324

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
             +D V W +MI  Y ++   +++  L   M   G + D  T I  +++ ++  ++   +
Sbjct: 325 KVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAR 384

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++H+ V+R G    + V  +L+ MY +C  +  AR++FD++  + VVSWS+MI  YV + 
Sbjct: 385 EIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENG 444

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              EA   F  MK   VE D VT IN+L AC ++GAL+    ++  ++K  L S   V  
Sbjct: 445 CGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGN 504

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+     K G IE A  +F  E +  +D++TWN MI  Y+ HG+  +   L+ +M +   
Sbjct: 505 ALINMNVKHGSIERARYIF--ENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERF 562

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           RP+ +TF+G+L+AC  AG VEEGR  F  + +  G  P+ E Y  MV+LLGRAG +DEA 
Sbjct: 563 RPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAE 622

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
            L+  MP KP++ +W  LL+AC+++   ++AE  AE+ +  EP +   YV LS++YAAAG
Sbjct: 623 LLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAG 682

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            W  VAK+R  +  RG++K  GC+WIE+   +H F   D+SHPQA  IY  L  L   I
Sbjct: 683 MWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAI 741



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 209/428 (48%), Gaps = 15/428 (3%)

Query: 197 LKSRWNSLISLAVQNGKSEKSF-------ELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           +  RW   +   VQ+ +    F       ++   +       DS T + L +  + L+  
Sbjct: 18  VAGRWCGFLQQPVQSARCRSIFTGQVGANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDA 77

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            LG+ V    + S    ++     L+ ++S   ++ +A+  FD + +K  V WN +I+ Y
Sbjct: 78  GLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGY 137

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDY 367
            Q G  KE+  L   MV       + T +  + + S+   ++ GK+ HA V++ G  SD+
Sbjct: 138 AQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDF 197

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           ++    +L+ MY +   ++ AR++FD +  + V +++ MI GY       +A +LF  M+
Sbjct: 198 RIG--TALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQ 255

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            EG + + ++ ++IL  C    AL   K +H   M  GL     V TA+   Y  CG IE
Sbjct: 256 QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIE 315

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  +FD+ K+  +D+++W  MI  YA++ +    F L+  M++  ++PD IT++ ++ A
Sbjct: 316 GARRVFDKMKV--RDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C ++  +   R I  ++  + G+        ++V++  + G + +AR++   M  + D  
Sbjct: 374 CASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMS-RRDVV 431

Query: 608 VWGPLLSA 615
            W  ++ A
Sbjct: 432 SWSAMIGA 439


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/652 (34%), Positives = 373/652 (57%), Gaps = 13/652 (1%)

Query: 61  LHQNLILSSNLIDS---------YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           +HQ+ + +++  DS         Y +   + L++++F+ I +P+ +L+  I++  +  G 
Sbjct: 30  IHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGP 89

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           ++  + +Y  M    + P + TYPFV+++CS LL    G +IH+     G +S   V  A
Sbjct: 90  FDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTA 149

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           LV+FY KC    E ++       +D+ + WN++I+     G  + + +L   M+ EG   
Sbjct: 150 LVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLCDDAVQLIMQMQEEGICP 208

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           +S T++ +L +  E K+L  G+ +H   V   F   + V T LL MY+K   L  A+ +F
Sbjct: 209 NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF 268

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNI 350
           D M  ++ V W+ MI  Y  S   KE+LEL   M+ +        T  + + + + + ++
Sbjct: 269 DVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDL 328

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
             G+++H  +++ GS   + + N+L+ MY +C  ++ A + FD +  K  VS+S+++ G 
Sbjct: 329 SRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGC 388

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
           V +  +  AL +F  M+L G++ D  T++ +LPAC ++ AL+H    HGY +  G  + +
Sbjct: 389 VQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT 448

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            +  A+   Y+KCG I  A E+F+  ++D  DI++WN+MI  Y  HG   +   L+  + 
Sbjct: 449 LICNALIDMYSKCGKISFAREVFN--RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL 506

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              ++PD ITF+ LL++C ++GLV EGR+ F  M   +   P  EH   MV++LGRAG +
Sbjct: 507 ALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLI 566

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           DEA   +++MPF+PD R+W  LLSAC++H   EL E  ++K+ S+ PE+ GN+VLLSNIY
Sbjct: 567 DEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIY 626

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           +AAG+W+  A +R   +D GLKK PGCSWIEI  +VH F   DQSH Q   I
Sbjct: 627 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 242/503 (48%), Gaps = 24/503 (4%)

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
           +  ++ Y  ++ +C         +KIH   +K   ++   V   L   Y+ C     N+ 
Sbjct: 5   FEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC-----NQV 59

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
            + +R F ++ +     WN +I     NG  + + +L+  M   G   +  T   +L++ 
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L ++E G  +H  A +     D+ V TAL+  Y+K   L +A+ LF  MS +D V WN
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+     G   ++++L+M M   G   +  T +  + ++   K +  GK +H   +R 
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
             D  V V   L+DMY +C+ L  ARKIFD +  +  VSWS+MI GYV  D   EAL LF
Sbjct: 240 SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELF 299

Query: 424 SEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
            +M L + ++   VT+ ++L AC  +  L   + LH Y +KLG      +   +   YAK
Sbjct: 300 DQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAK 359

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG I+ A   FDE  ++ KD +++++++S   ++G+ +    ++  M+ S + PDL T L
Sbjct: 360 CGVIDDAIRFFDE--MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTML 417

Query: 543 GLLTAC-----VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
           G+L AC     +  G    G +I +      G+        +++++  + G +  ARE+ 
Sbjct: 418 GVLPACSHLAALQHGFCSHGYLIVR------GFATDTLICNALIDMYSKCGKISFAREVF 471

Query: 598 KDMPFKPDARVWGPLLSACKMHS 620
             M  + D   W  ++    +H 
Sbjct: 472 NRMD-RHDIVSWNAMIIGYGIHG 493



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 207/404 (51%), Gaps = 15/404 (3%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HA+   + GL  ++ + + L+D YA  G+L  +Q++F+S++  + + +  ++   S +G 
Sbjct: 134 HAK---MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
            +  + +  QM  + + P   T   V+ +         G+ +H   V+  FD+   VG  
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDL-----KSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           L++ Y KC      +  +  RK  D+     +  W+++I   V +   +++ ELF  M +
Sbjct: 251 LLDMYAKC------QCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 227 EGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           + A +    TL ++LR+  +L  L  GR +HC  +      D+ +   LLSMY+K   ++
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVID 364

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DA   FD+M+ KD V ++ ++S   Q+G    +L +   M  SG   DL T +  + + S
Sbjct: 365 DAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  ++ G   H  ++  G      + N+LIDMY +C  ++ AR++F+ +    +VSW++
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNA 484

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           MI GY  H   +EAL LF ++   G++ D +T I +L +C + G
Sbjct: 485 MIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 528


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/661 (34%), Positives = 388/661 (58%), Gaps = 18/661 (2%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +++ G  Q++ +S+ L++ YANLG +SLS+  F+ I   +   + +++      G + + 
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEA 201

Query: 116 LLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +  + Q+ L S + P   T+P V+++C  L+D   G KIH    KLGF     V  +L+ 
Sbjct: 202 IGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIH 258

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y +   GF    G+ +  F D+  R    WN++IS  +QNG + ++ ++   MR+EG +
Sbjct: 259 MYSRF--GF---TGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T++++L    +L  +    ++H   +      DL V+ AL++MY+K  +LEDA+  
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F +M   D V WN +I+AY Q+  P  +    + M  +GF+ DL T ++  S ++  ++ 
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 351 EWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  + +H  ++R G   + V + N+++DMY +   L+ A K+F+ +  K V+SW+++I G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITG 493

Query: 410 YVTHDQSLEALRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           Y  +  + EA+ ++  M+  + +  +  T ++ILPA  ++GAL+    +HG  +K  L+ 
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHL 553

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V T +   Y KCG +  A  LF   ++  +  +TWN++IS +  HG   +  KL+ +
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLF--YQVPQESSVTWNAIISCHGIHGHAEKTLKLFGE 611

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    V+PD +TF+ LL+AC ++G VEEG+  F+ M+E YG +PS +HY  MV+LLGRAG
Sbjct: 612 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAG 670

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
           +++ A + +KDMP +PDA +WG LL AC++H   EL +  +++L  ++ +N G YVLLSN
Sbjct: 671 YLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 730

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           IYA  GKW GV K+R+  R+RGLKKTPG S IE+ + V  F+  +QSHP+   IY  L +
Sbjct: 731 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRV 790

Query: 709 L 709
           L
Sbjct: 791 L 791



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 208/411 (50%), Gaps = 17/411 (4%)

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
             + +H + VV+   + + ++T L+++Y+ L  +  ++  FD++  KD   WN MISAY 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 311 QSGFPKESLE-LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            +G   E++      ++ S  R D +T    + +  T+ +   G+++H    + G  + V
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 250

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V  SLI MY        AR +FD +  + + SW++MI G + +  + +AL +  EM+LE
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           G++++FVT+++ILP C  +G +     +H Y +K GL     V+ A+   YAK G +E A
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            + F +  I   D+++WNS+I+AY ++ D       + +M+ +  +PDL+T + L +   
Sbjct: 371 RKAFQQMFI--TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 550 NAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +   +  R +    M+  +  E      A +V++  + G +D A ++ + +P K D   
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNA-VVDMYAKLGLLDSAHKVFEIIPVK-DVIS 486

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEP-----ENAGNYVLLSNIYAAAG 654
           W  L++    +++  LA    E    ME       N G +V +   YA  G
Sbjct: 487 WNTLITG---YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 155/322 (48%), Gaps = 11/322 (3%)

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           + K +HA ++  G    + +   L+++Y    D++ +R  FD +  K V +W+SMI  YV
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 412 THDQSLEALRLFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
            +    EA+  F ++ L   +  DF T   +L AC   G L   + +H ++ KLG     
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNV 250

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            V  ++   Y++ G   +A  LFD+  +  +D+ +WN+MIS   ++G+ +Q   +  +M+
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDD--MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              ++ + +T + +L  C   G +    +I   + + +G E       +++N+  + G++
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK-HGLEFDLFVSNALINMYAKFGNL 367

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAE--LTAEKLISMEPENAGNYVLLSN 648
           ++AR+  + M F  D   W  +++A + + +   A       +L   +P+     V L++
Sbjct: 368 EDARKAFQQM-FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL-TLVSLAS 425

Query: 649 IYAAAGKWNGVAKMRTFLRDRG 670
           I A +        +  F+  RG
Sbjct: 426 IVAQSRDCKNSRSVHGFIMRRG 447



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 148/307 (48%), Gaps = 20/307 (6%)

Query: 13  SGHVKFLRFPANQTRPHMTATHSF-SLLNLCENPQHLQQIHARYIILHG-LHQNLILSSN 70
           + H  F++   N  +P +    S  S++    + ++ + +H  +I+  G L +++++ + 
Sbjct: 400 TAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHG-FIMRRGWLMEDVVIGNA 458

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYP 129
           ++D YA LGLL  + +VF  I   + + + T++   ++ G   + + VYK M   + + P
Sbjct: 459 VVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIP 518

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEK 187
            + T+  ++ + + +     G KIH +V+K  L  D F  V   L++ Y KC G   +  
Sbjct: 519 NQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVF--VATCLIDVYGKC-GRLVDAM 575

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
            +  +  ++    WN++IS    +G +EK+ +LF  M  EG + D  T ++LL +     
Sbjct: 576 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 248 SLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSD----KDRVV 301
            +E G+   C  ++ ++    S+     ++ +  +   LE   M +D + D     D  +
Sbjct: 636 FVEEGKW--CFRLMQEYGIKPSLKHYGCMVDLLGRAGYLE---MAYDFIKDMPLQPDASI 690

Query: 302 WNIMISA 308
           W  ++ A
Sbjct: 691 WGALLGA 697


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/718 (32%), Positives = 393/718 (54%), Gaps = 24/718 (3%)

Query: 3   GLLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILH 59
           G   PA  LQ  H K          P + +     LL  C   + L   +Q+H  +I+  
Sbjct: 8   GWYAPADVLQYLHRKG---------PQVDSYDYVKLLQSCVKAKDLAVGKQVH-EHILRC 57

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G+  N+ +++ L+  YA+ G ++ ++Q+F+  ++ + + +  ++   +  G  ++   ++
Sbjct: 58  GVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLF 117

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M  + + P + T+  ++ +CS       G +IH +V++ G  +   VG+AL+  Y KC
Sbjct: 118 TLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKC 177

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
            G   + +    R F  + SR    W +L     ++G  E+S + +  M  E       T
Sbjct: 178 -GSVRDAR----RVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRIT 232

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
            +N+L +   L +LE G+ +H   V S++  D+ V+TAL  MY K  + +DA+ +F+ +S
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            +D + WN MI  +  SG  +E+      M+  G   D  T    +S+ +    +  GK+
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +HA   ++G    V   N+LI+MY +   +  AR++FD +  + VVSW++++  Y   DQ
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            +E+   F +M  +GV+ + +T + +L AC N  AL+  K +H   +K GL +  +V  A
Sbjct: 413 VVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNA 472

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y KCG +E A  +F  E +  +D++TWN++I    ++G   +  + Y  MK   +R
Sbjct: 473 LMSMYFKCGSVEDAIRVF--EGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMR 530

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+  TF+ +L+AC    LVEEGR  F  M + YG  P+++HYA MV++L RAGH+ EA +
Sbjct: 531 PNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAED 590

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           ++  +P KP A +WG LL+AC++H   E+ E  AE  + +EP+NAG YV LS IYAAAG 
Sbjct: 591 VILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGM 650

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           W  VAK+R F+++RG+KK PG SWIEI   VH F A DQSHP+   IY  L  L+ ++
Sbjct: 651 WRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQM 708


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/652 (34%), Positives = 372/652 (57%), Gaps = 13/652 (1%)

Query: 61  LHQNLILSSNLIDS---------YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           +HQ+ + +++  DS         Y +   + L++++F+ I +P+ +L+  I++  +  G 
Sbjct: 30  IHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGP 89

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           ++  + +Y  M    + P + TYPFV+++CS LL    G +IH+     G +S   V  A
Sbjct: 90  FDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTA 149

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           LV+FY KC    E ++       +D+ + WN++I+     G  + + +L   M+ EG   
Sbjct: 150 LVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLCDDAVQLIMQMQEEGICP 208

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           +S T++ +L +  E K+L  G+ +H   V   F   + V T LL MY+K   L  A+ +F
Sbjct: 209 NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF 268

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNI 350
           D M  ++ V W+ MI  Y  S   KE+LEL   M+ +        T  + + + + + ++
Sbjct: 269 DVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDL 328

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
             G+++H  +++ G    + + N+L+ MY +C  ++ A + FD +  K  VS+S+++ G 
Sbjct: 329 SRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGC 388

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
           V +  +  AL +F  M+L G++ D  T++ +LPAC ++ AL+H    HGY +  G  + +
Sbjct: 389 VQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT 448

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            +  A+   Y+KCG I  A E+F+  ++D  DI++WN+MI  Y  HG   +   L+  + 
Sbjct: 449 LICNALIDMYSKCGKISFAREVFN--RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL 506

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              ++PD ITF+ LL++C ++GLV EGR+ F  M   +   P  EH   MV++LGRAG +
Sbjct: 507 ALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLI 566

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           DEA   +++MPF+PD R+W  LLSAC++H   EL E  ++K+ S+ PE+ GN+VLLSNIY
Sbjct: 567 DEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIY 626

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           +AAG+W+  A +R   +D GLKK PGCSWIEI  +VH F   DQSH Q   I
Sbjct: 627 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 240/500 (48%), Gaps = 24/500 (4%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           ++ Y  ++ +C         +KIH   +K   ++   V   L   Y+ C     N+  + 
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC-----NQVVLA 62

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           +R F ++ +     WN +I     NG  + + +L+  M   G   +  T   +L++   L
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            ++E G  +H  A +     D+ V TAL+  Y+K   L +A+ LF  MS +D V WN MI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           +     G   ++++L+M M   G   +  T +  + ++   K +  GK +H   +R   D
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFD 242

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V V   L+DMY +C+ L  ARKIFD +  +  VSWS+MI GYV  D   EAL LF +M
Sbjct: 243 NGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQM 302

Query: 427 KL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
            L + ++   VT+ ++L AC  +  L   + LH Y +KLG      +   +   YAKCG 
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGV 362

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           I+ A   FD   ++ KD +++++++S   ++G+ +    ++  M+ S + PDL T LG+L
Sbjct: 363 IDDAIRFFD--XMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVL 420

Query: 546 TAC-----VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            AC     +  G    G +I +      G+        +++++  + G +  ARE+   M
Sbjct: 421 PACSHLAALQHGFCSHGYLIVR------GFATDTLICNALIDMYSKCGKISFAREVFNRM 474

Query: 601 PFKPDARVWGPLLSACKMHS 620
             + D   W  ++    +H 
Sbjct: 475 D-RHDIVSWNAMIIGYGIHG 493



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 206/404 (50%), Gaps = 15/404 (3%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HA+   + GL  ++ + + L+D YA  G+L  +Q++F+S++  + + +  ++   S +G 
Sbjct: 134 HAK---MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
            +  + +  QM  + + P   T   V+ +         G+ +H   V+  FD+   VG  
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDL-----KSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           L++ Y KC      +  +  RK  D+     +  W+++I   V +   +++ ELF  M +
Sbjct: 251 LLDMYAKC------QCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 227 EGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           + A +    TL ++LR+  +L  L  GR +HC  +      D+ +   LLSMY+K   ++
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVID 364

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DA   FD M+ KD V ++ ++S   Q+G    +L +   M  SG   DL T +  + + S
Sbjct: 365 DAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  ++ G   H  ++  G      + N+LIDMY +C  ++ AR++F+ +    +VSW++
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNA 484

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           MI GY  H   +EAL LF ++   G++ D +T I +L +C + G
Sbjct: 485 MIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 528



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 1/200 (0%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           YII  G   +++L + L+  YA  G++  + + F+ +   +S+ +  I+    + G    
Sbjct: 337 YIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAV 396

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L +++ M L  + P   T   V+ +CS L     G   H  ++  GF +   + +AL++
Sbjct: 397 ALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALID 456

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y KC G     + +  R  +     WN++I     +G   ++  LF  +   G + D  
Sbjct: 457 MYSKC-GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDI 515

Query: 235 TLINLLRSTVELKSLELGRI 254
           T I LL S      +  GR+
Sbjct: 516 TFICLLSSCSHSGLVMEGRL 535


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/656 (33%), Positives = 378/656 (57%), Gaps = 3/656 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  ++ + S L+  YA+ GLL  ++  F+ I   + +L+  ++    K G+ +  + ++
Sbjct: 171 GLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLF 230

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           + M      P   T    +  C+   D +SG ++H+  VK G +    V + L+  Y KC
Sbjct: 231 RNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKC 290

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
               ++   + +   +D    WN +IS  VQNG   ++F LF  M+  GA  DS TL++L
Sbjct: 291 QC-LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSL 349

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L +  +L  L+ G+ VH   V +    D+ + +AL+ +Y K   +  A+ L+D     D 
Sbjct: 350 LPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDV 409

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V+ + MIS Y  +G  +E+L++   ++    + +  T  + +   ++M  +  G+Q+H  
Sbjct: 410 VIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGY 469

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           VLRN  + +  V ++L+DMY +C  L+ +  IF  +  K  V+W+SMI  +  + +  EA
Sbjct: 470 VLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEA 529

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF +M +EG++ + +TI   L AC ++ A+ + K +HG ++K  + +     +A+   
Sbjct: 530 LDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDM 589

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG +E+A  +F  E +  K+ ++WNS+ISAY  HG   +   L   M++   +PD +
Sbjct: 590 YAKCGNLELALRVF--EFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHV 647

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL L++AC +AGLVEEG  +F+ M + Y   P  EH+A MV+L  R+G +D+A + + D
Sbjct: 648 TFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIAD 707

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPFKPDA +WG LL AC++H   ELA++ +++L  ++P N+G YVL+SNI A AG+W+GV
Sbjct: 708 MPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGV 767

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +K+R  ++D  + K PG SW+++    H F A+D+SHP+++ IYT L  L  E+ E
Sbjct: 768 SKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELRE 823



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 170/604 (28%), Positives = 307/604 (50%), Gaps = 25/604 (4%)

Query: 31  TATHSFSLLNLCENPQHLQ---QIHARYIILHGL--HQNLILSSNLIDSYANLGLLSLSQ 85
           +A    ++L  C +  HL    QIHAR ++   L  H +L L + L+  Y        + 
Sbjct: 31  SADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAV 90

Query: 86  QVFNSI---TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRS 140
            VF+++    + +SL +  +++  +  G++   +L Y +M      P+ D  T P+V++S
Sbjct: 91  AVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKS 150

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+ L     G  +H     +G  +   VG ALV+ Y   D G     G  +  F  +  R
Sbjct: 151 CAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMY--ADAGL---LGNARDAFDGIPER 205

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               WN ++   ++ G  + +  LF+ MR  G E +  TL   L        L  G  +H
Sbjct: 206 DCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLH 265

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            +AV      +++V   LL+MY+K   L+DA  LF+ M   D V WN MIS   Q+G   
Sbjct: 266 SLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFV 325

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+  L   M RSG R D  T ++ + +++ +  ++ GK++H  ++RN  +  V + ++L+
Sbjct: 326 EAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALV 385

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           D+Y +C D+  A+ ++D+ +   VV  S+MI GYV +  S EAL++F  +  + ++ + V
Sbjct: 386 DIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAV 445

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           TI ++LP C ++ AL   + +HGY ++        V +A+   YAKCG ++++  +F   
Sbjct: 446 TIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIF--L 503

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K+  KD +TWNSMIS+++++G   +   L+ QM    ++ + IT    L+AC +   +  
Sbjct: 504 KMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYY 563

Query: 557 GRIIFK-EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           G+ I    +K     +   E  ++++++  + G+++ A  + + MP K +   W  ++SA
Sbjct: 564 GKEIHGVTIKGPIKADIFAE--SALIDMYAKCGNLELALRVFEFMPDKNEVS-WNSIISA 620

Query: 616 CKMH 619
              H
Sbjct: 621 YGAH 624



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 165/308 (53%), Gaps = 2/308 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  YI+ + ++ ++ L S L+D Y     + ++Q ++++  + + ++  T++     
Sbjct: 363 KEVHG-YIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVL 421

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L +++ +  Q + P   T   V+  C+ +     G++IH  V++  ++    V
Sbjct: 422 NGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYV 481

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL++ Y KC G  +    +  +  +  +  WNS+IS   QNGK +++ +LF+ M MEG
Sbjct: 482 ESALMDMYAKC-GRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEG 540

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            ++++ T+   L +   L ++  G+ +H V +      D+   +AL+ MY+K  +LE A 
Sbjct: 541 IKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELAL 600

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+ M DK+ V WN +ISAY   G  KES+ LL  M   G++ D  T +A +S+ +   
Sbjct: 601 RVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAG 660

Query: 349 NIEWGKQM 356
            +E G Q+
Sbjct: 661 LVEEGVQL 668



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 123/266 (46%), Gaps = 12/266 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQIH  Y++ +   +   + S L+D YA  G L LS  +F  ++  + + + +++ + S+
Sbjct: 464 QQIHG-YVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQ 522

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+ ++ L +++QM ++ +     T    + +C+ L     G++IH   +K    +    
Sbjct: 523 NGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFA 582

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
             AL++ Y KC G  E    +  R F+ +  +    WNS+IS    +G  ++S  L   M
Sbjct: 583 ESALIDMYAKC-GNLE----LALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGM 637

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           + EG + D  T + L+ +      +E G ++  C+         +     ++ +YS+   
Sbjct: 638 QEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGK 697

Query: 284 LEDAKMLFDKMSDK-DRVVWNIMISA 308
           L+ A      M  K D  +W  ++ A
Sbjct: 698 LDKAIQFIADMPFKPDAGIWGALLHA 723


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/654 (34%), Positives = 377/654 (57%), Gaps = 13/654 (1%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           +S+ LID Y+  G + ++++VF+ +   + + +GT++   +  G + + L ++ +M L +
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           +   + +      + +  +D   G++IH   ++   DS   V   L+  Y KC    E E
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCG---ETE 381

Query: 187 KGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           K   ++ F  L+ R    W+++I+  VQ G  E++  LF+ M+ +  + +  TL+++L +
Sbjct: 382 KA--KQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPA 439

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             +L  L+LG+ +HC  V +D   DLS  TAL+SMY+K      A   F++MS +D V W
Sbjct: 440 CADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTW 499

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N +I+ Y Q G P  ++++   +  S    D  T +  V + + + +++ G  +H  +++
Sbjct: 500 NSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK 559

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALR 421
            G +    V N+LIDMY +C  L  A  +F+    TK  V+W+ +I  Y+ +  + EA+ 
Sbjct: 560 LGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAIS 619

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F +M+LE    + VT +++LPA   + A       H   +++G  S + V  ++   YA
Sbjct: 620 SFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYA 679

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  + +LF+E  +D KD ++WN+M+S YA HG   +   L++ M++S V+ D ++F
Sbjct: 680 KCGQLXYSEKLFNE--MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSF 737

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC + GLVEEGR IF  M + Y  +P  EHYA MV+LLGRAG  DE    +K MP
Sbjct: 738 VSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 797

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +PDA VWG LL +C+MHS  +L E+  + L+ +EP N  ++V+LS+IYA +G+W    K
Sbjct: 798 VEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGK 857

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            R+ + D GLKKTPGCSW+E+   VH F   D+SHPQ ++++ +   L LE ME
Sbjct: 858 ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL-LEKME 910



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/636 (26%), Positives = 331/636 (52%), Gaps = 14/636 (2%)

Query: 21  FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           FP+  +  +    H   LL+ C++   L QIHA+ I+    H + I  ++LI+ Y+    
Sbjct: 21  FPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI--THLINLYSLFHK 78

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
             L++ VF+S  +P+ +L+ ++++  ++  +Y + L +Y  M  + + P + T+ FV+++
Sbjct: 79  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKA 138

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+  L+   G   H ++ + G +    +G  LV+ Y K  G  +  + +  +  K     
Sbjct: 139 CTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM-GDLKRAREVFDKMPKRDVVA 197

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I+   Q+    ++ + F+ M++ G E  S +L+NL     +L ++EL R +H    
Sbjct: 198 WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVF 257

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             DF    +V+  L+ +YSK   ++ A+ +FD+M D+D V W  M++ Y  +G   E LE
Sbjct: 258 RRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M     R +  +A++A  + +   ++E GK++H   L+   D  + V   L+ MY 
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYA 375

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C +   A+++F  ++ + +V+WS++I   V      EAL LF EM+ + ++ + VT+++
Sbjct: 376 KCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMS 435

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           ILPAC ++  L+  K +H +++K  ++S  S  TA+   YAKCG    A   F+  ++ S
Sbjct: 436 ILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFN--RMSS 493

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +DI+TWNS+I+ YA+ GD      ++ +++ S + PD  T +G++ AC     +++G  I
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM-- 618
              + +  G+E       +++++  + G +  A  L     F  D   W  +++A     
Sbjct: 554 HGLIVK-LGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNG 612

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           H++  ++     +L +  P    N V   ++  AA 
Sbjct: 613 HAKEAISSFHQMRLENFHP----NSVTFVSVLPAAA 644



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 177/349 (50%), Gaps = 8/349 (2%)

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLL---RSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            +SF        E     S T  N L   R     K L     +H   +VS F    S+ 
Sbjct: 8   RRSFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI- 66

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T L+++YS     + A+ +FD   +  R++WN MI AY +S    E+LE+  CMV  G  
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D +T    + + +   N++ G   H  + R G +  V +   L+DMY +  DL  AR++
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  + VV+W++MI G    +   EA+  F  M+L GVE   V+++N+ P    +  +
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI 246

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E  + +HGY  +   +  S+V+  +   Y+KCG +++A  +FD+  +  +D ++W +M++
Sbjct: 247 ELCRSIHGYVFRRDFS--SAVSNGLIDLYSKCGDVDVARRVFDQ--MVDQDDVSWGTMMA 302

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            YA +G + +  +L+ +MK  +VR + ++ +    A      +E+G+ I
Sbjct: 303 GYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEI 351


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/680 (33%), Positives = 381/680 (56%), Gaps = 8/680 (1%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L LC   + L+   ++H+  II +G+  +  L + L+  Y N G L   +++F+ I +
Sbjct: 99  SVLQLCAEKKSLEDGKRVHS-VIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMN 157

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
               L+  ++   +K G + +++ ++K+M    +     T+  V++  + L      +++
Sbjct: 158 DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 217

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  V+KLGF S   V ++L+  Y K  GG E+   +     +     WNS+I+  V NG 
Sbjct: 218 HGYVLKLGFGSNTAVVNSLIAAYFKF-GGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 276

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           S    E+F  M + G E D  TL+++L +   + +L LGR +H   V + F +++  +  
Sbjct: 277 SGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNT 336

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL MYSK  +L  A  +F KM D   V W  +I+AY + G   +++ L   M   G R D
Sbjct: 337 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
           ++T  + V + +   +++ G+ +H+ V++NG    + V N+LI+MY +C  +  AR +F 
Sbjct: 397 IYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFS 456

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K +VSW++MI GY  +    EAL LF +M+ +  + D +T+  +LPAC  + AL+ 
Sbjct: 457 KIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDK 515

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +HG+ ++ G  S   V  A+   YAKCG + +A  LFD   I  KD+I+W  MI+ Y
Sbjct: 516 GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFD--MIPKKDLISWTVMIAGY 573

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
             HG  ++    + +M+ + + PD  +F  +L AC ++GL+ EG   F  M+   G EP 
Sbjct: 574 GMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPK 633

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHYA +V+LL R G++ +A + ++ MP KPD  +WG LLS C++H + +LAE  AE + 
Sbjct: 634 LEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIF 693

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP+N   YV+L+N+YA A KW  V K+R  ++ RG K+ PGCSWIE+G   + F A +
Sbjct: 694 ELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 753

Query: 694 QSHPQADAIYTILGILELEI 713
             HPQA  I  +L  L +++
Sbjct: 754 SKHPQAKKIDVLLSKLTMQM 773



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 260/518 (50%), Gaps = 8/518 (1%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           ++Y  V++ C+       G+++H+ ++  G    + +G  LV  Y+ C G     + +  
Sbjct: 95  NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNC-GDLVQGRKIFD 153

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           +   D    WN L+S   + G   +S  LFK M+  G   +  T   +L+    L  ++ 
Sbjct: 154 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 213

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
            + VH   +   F  + +V  +L++ Y K   +E A  LFD++S+ D V WN MI+    
Sbjct: 214 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +GF    LE+ + M+  G   DL T ++ + + + + N+  G+ +H   ++     +V  
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N+L+DMY +C +LN A ++F  +   T+VSW+S+I  YV      +A+ LF EM+ +GV
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
             D  T+ +I+ AC    +L+  + +H Y +K G+ S   V  A+   YAKCG +E A  
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 453

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F   KI  KDI++WN+MI  Y+++   ++  +L+  M Q   +PD IT   +L AC   
Sbjct: 454 VF--SKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGL 510

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             +++GR I   +    GY        ++V++  + G +  A +L+ DM  K D   W  
Sbjct: 511 AALDKGREIHGHILRR-GYFSDLHVACALVDMYAKCGLLVLA-QLLFDMIPKKDLISWTV 568

Query: 612 LLSACKMH--SETELAELTAEKLISMEPENAGNYVLLS 647
           +++   MH      ++     ++  +EP+ +    +L+
Sbjct: 569 MIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILN 606



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 229/462 (49%), Gaps = 9/462 (1%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N+ I+   + G    + EL  L + +  E    +  ++L+   E KSLE G+ VH V + 
Sbjct: 65  NAKINKFCEMGDLRNAIEL--LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           +    D ++   L+ MY     L   + +FDK+ +    +WN+++S Y + G  +ES+ L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M + G   + +T    +   + +  ++  K++H  VL+ G     +V NSLI  Y +
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              +  A  +FD +    VVSW+SMI G V +  S   L +F +M + GVEVD  T++++
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L AC NIG L   + LHG+ +K   +     +  +   Y+KCG +  A E+F   K+   
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF--VKMGDT 360

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
            I++W S+I+AY + G +S    L+ +M+   VRPD+ T   ++ AC  +  +++GR + 
Sbjct: 361 TIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 420

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             + ++ G   +     +++N+  + G ++EAR +   +P K D   W  ++     +S+
Sbjct: 421 SYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG---YSQ 475

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
             L     E  + M+ +   + + ++ +  A      + K R
Sbjct: 476 NLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGR 517


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/661 (34%), Positives = 387/661 (58%), Gaps = 18/661 (2%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +++ G  Q++ +S+ L++ YANLG +SLS+  F+ I   +   + +++      G + + 
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEA 201

Query: 116 LLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +  + Q+ L S + P   T+P V+++C  L+D   G +IH    KLGF     V  +L+ 
Sbjct: 202 IGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIH 258

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y +   GF    G+ +  F D+  R    WN++IS  +QNG + ++ ++   MR+EG +
Sbjct: 259 MYSRF--GF---TGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T++++L    +L  +    ++H   +      DL V+ AL++MY+K  +LEDA+  
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKA 373

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F +M   D V WN +I+AY Q+  P  +    + M  +GF+ DL T ++  S ++  ++ 
Sbjct: 374 FQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDC 433

Query: 351 EWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  + +H  ++R G   + V + N+++DMY +   L+ A K+F+ +  K V+SW+++I G
Sbjct: 434 KNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITG 493

Query: 410 YVTHDQSLEALRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           Y  +  + EA+ ++  M+  + +  +  T ++ILPA  ++GAL+    +HG  +K  L+ 
Sbjct: 494 YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHL 553

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V T +   Y KCG +  A  LF   ++  +  +TWN++IS +  HG   +  KL+ +
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLF--YQVPQESSVTWNAIISCHGIHGHAEKTLKLFGE 611

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    V+PD +TF+ LL+AC ++G VEEG+  F+ M+E YG +PS +HY  MV+LLGRAG
Sbjct: 612 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAG 670

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
           +++ A   +KDMP +PDA +WG LL AC++H   EL +  +++L  ++ +N G YVLLSN
Sbjct: 671 YLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 730

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           IYA  GKW GV K+R+  R+RGLKKTPG S IE+ + V  F+  +QSHP+   IY  L +
Sbjct: 731 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRV 790

Query: 709 L 709
           L
Sbjct: 791 L 791



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 207/411 (50%), Gaps = 17/411 (4%)

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
             + +H + VV+   + + ++T L+++Y+ L  +  ++  FD++  KD   WN MISAY 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 311 QSGFPKESLE-LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            +G   E++      ++ S  R D +T    + +  T+ +   G+++H    + G  + V
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNV 250

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V  SLI MY        AR +FD +  + + SW++MI G + +  + +AL +  EM+LE
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 310

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           G++++FVT+++ILP C  +G +     +H Y +K GL     V+ A+   YAK G +E A
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDA 370

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            + F +  I   D+++WNS+I+AY ++ D       + +M+ +  +PDL+T + L +   
Sbjct: 371 RKAFQQMFI--TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 550 NAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +   +  R +    M+  +  E      A +V++  + G +D A ++ + +  K D   
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNA-VVDMYAKLGLLDSAHKVFEIILVK-DVIS 486

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEP-----ENAGNYVLLSNIYAAAG 654
           W  L++    +++  LA    E    ME       N G +V +   YA  G
Sbjct: 487 WNTLITG---YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 155/322 (48%), Gaps = 11/322 (3%)

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           + K +HA ++  G    + +   L+++Y    D++ +R  FD +  K V +W+SMI  YV
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 412 THDQSLEALRLFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
            +    EA+  F ++ L   +  DF T   +L AC   G L   + +H ++ KLG     
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNV 250

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            V  ++   Y++ G   +A  LFD+  +  +D+ +WN+MIS   ++G+ +Q   +  +M+
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDD--MPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              ++ + +T + +L  C   G +    +I   + + +G E       +++N+  + G++
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK-HGLEFDLFVSNALINMYAKFGNL 367

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAE--LTAEKLISMEPENAGNYVLLSN 648
           ++AR+  + M F  D   W  +++A + + +   A       +L   +P+     V L++
Sbjct: 368 EDARKAFQQM-FITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLL-TLVSLAS 425

Query: 649 IYAAAGKWNGVAKMRTFLRDRG 670
           I A +        +  F+  RG
Sbjct: 426 IVAQSRDCKNSRSVHGFIMRRG 447



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 145/304 (47%), Gaps = 14/304 (4%)

Query: 13  SGHVKFLRFPANQTRPHMTATHSF-SLLNLCENPQHLQQIHARYIILHG-LHQNLILSSN 70
           + H  F++   N  +P +    S  S++    + ++ + +H  +I+  G L +++++ + 
Sbjct: 400 TAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHG-FIMRRGWLMEDVVIGNA 458

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYP 129
           ++D YA LGLL  + +VF  I   + + + T++   ++ G   + + VYK M   + + P
Sbjct: 459 VVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIP 518

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEK 187
            + T+  ++ + + +     G +IH +V+K  L  D F  V   L++ Y KC G   +  
Sbjct: 519 NQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVF--VATCLIDVYGKC-GRLVDAM 575

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
            +  +  ++    WN++IS    +G +EK+ +LF  M  EG + D  T ++LL +     
Sbjct: 576 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 248 SLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNI 304
            +E G+   C  ++ ++    S+     ++ +  +   LE A      M    D  +W  
Sbjct: 636 FVEEGKW--CFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGA 693

Query: 305 MISA 308
           ++ A
Sbjct: 694 LLGA 697


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/679 (34%), Positives = 383/679 (56%), Gaps = 13/679 (1%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L N C N    +++HA  +++ G  QN++LS+ LI+ Y   G +SLS+  F+ I   N 
Sbjct: 27  ALFNSCVNVNATKKLHA-LLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNI 85

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQM----ALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + +I+    +FG+Y + +    Q+        + P   T+P ++++C  L+D   G+K
Sbjct: 86  FSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKK 142

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H  V K+GF+    V  +LV  Y +        K  +    KD+ S WN++IS   QNG
Sbjct: 143 VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS-WNAMISGFCQNG 201

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
            +  +  +   M+ EG + D+ T+ ++L    +   +  G ++H   +      D+ V+ 
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL++MYSK   L+DA+M+FD+M  +D V WN +I+AY Q+  P  +L     M   G R 
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKI 391
           DL T ++  S  S + +    + +   V+R    D  V + N+L++MY +   +NCA  +
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK-LEGVEVDFVTIINILPACVNIGA 450
           FD +  K  +SW++++ GY  +  + EA+  ++ M+       +  T ++I+PA  ++GA
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+    +H   +K  L     V T +   Y KCG +E A  LF E   D+   + WN++I
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS--VPWNAII 499

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           ++   HG   +  +L+  M    V+ D ITF+ LL+AC ++GLV+EG+  F  M++ YG 
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +PS +HY  MV+LLGRAG++++A ELV++MP +PDA +WG LLSACK++   EL  L ++
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           +L+ ++ EN G YVLLSNIYA   KW GV K+R+  RDRGL+KTPG S + +G     F+
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 691 AADQSHPQADAIYTILGIL 709
             +Q+HP+   IY  L +L
Sbjct: 680 TGNQTHPKYTEIYKELKVL 698


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/679 (34%), Positives = 383/679 (56%), Gaps = 13/679 (1%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L N C N    +++HA  +++ G  QN++LS+ LI+ Y   G +SLS+  F+ I   N 
Sbjct: 27  ALFNSCVNVNATKKLHA-LLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNI 85

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQM----ALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + +I+    +FG+Y + +    Q+        + P   T+P ++++C  L+D   G+K
Sbjct: 86  FSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKK 142

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H  V K+GF+    V  +LV  Y +        K  +    KD+ S WN++IS   QNG
Sbjct: 143 VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS-WNAMISGFCQNG 201

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
            +  +  +   M+ EG + D+ T+ ++L    +   +  G ++H   +      D+ V+ 
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL++MYSK   L+DA+M+FD+M  +D V WN +I+AY Q+  P  +L     M   G R 
Sbjct: 262 ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKI 391
           DL T ++  S  S + +    + +   V+R    D  V + N+L++MY +   +NCA  +
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK-LEGVEVDFVTIINILPACVNIGA 450
           FD +  K  +SW++++ GY  +  + EA+  ++ M+       +  T ++I+PA  ++GA
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+    +H   +K  L     V T +   Y KCG +E A  LF E   D+   + WN++I
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS--VPWNAII 499

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           ++   HG   +  +L+  M    V+ D ITF+ LL+AC ++GLV+EG+  F  M++ YG 
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +PS +HY  MV+LLGRAG++++A ELV++MP +PDA +WG LLSACK++   EL  L ++
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           +L+ ++ EN G YVLLSNIYA   KW GV K+R+  RDRGL+KTPG S + +G     F+
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 691 AADQSHPQADAIYTILGIL 709
             +Q+HP+   IY  L +L
Sbjct: 680 TGNQTHPKYTEIYKELKVL 698


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/680 (33%), Positives = 380/680 (55%), Gaps = 8/680 (1%)

Query: 37   SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            S+L LC   + L+   ++H+  II +G+  +  L + L+  Y N G L   +++F+ I +
Sbjct: 374  SVLQLCAEKKSLEDGKRVHS-VIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMN 432

Query: 94   PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
                L+  ++   +K G + +++ ++K+M    +     T+  V++  + L      +++
Sbjct: 433  DKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV 492

Query: 154  HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
            H  V+KLGF S   V ++L+  Y K  GG E+   +     +     WNS+I+  V NG 
Sbjct: 493  HGYVLKLGFGSNTAVVNSLIAAYFKF-GGVESAHNLFDELSEPDVVSWNSMINGCVVNGF 551

Query: 214  SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            S    E+F  M + G E D  TL+++L +   + +L LGR +H   V + F +++  +  
Sbjct: 552  SGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNT 611

Query: 274  LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
            LL MYSK  +L  A  +F KM D   V W   I+AY + G   +++ L   M   G R D
Sbjct: 612  LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671

Query: 334  LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            ++T  + V + +   +++ G+ +H+ V++NG    + V N+LI+MY +C  +  AR +F 
Sbjct: 672  IYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFS 731

Query: 394  SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
             +  K +VSW++MI GY  +    EAL LF +M+ +  + D +T+  +LPAC  + AL+ 
Sbjct: 732  KIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDK 790

Query: 454  VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
             + +HG+ ++ G  S   V  A+   YAKCG + +A  LFD   I  KD+I+W  MI+ Y
Sbjct: 791  GREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFD--MIPKKDLISWTVMIAGY 848

Query: 514  AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
              HG  ++    + +M+ + + PD  +F  +L AC ++GL+ EG   F  M+   G EP 
Sbjct: 849  GMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPK 908

Query: 574  QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
             EHYA +V+LL R G++ +A + ++ MP KPD  +WG LLS C++H + +LAE  AE + 
Sbjct: 909  LEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIF 968

Query: 634  SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
             +EP+N   YV+L+N+YA A KW  V K+R  ++ RG K+ PGCSWIE+G   + F A +
Sbjct: 969  ELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGN 1028

Query: 694  QSHPQADAIYTILGILELEI 713
              HPQA  I  +L  L +++
Sbjct: 1029 SKHPQAKRIDVLLRKLTMQM 1048



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 260/518 (50%), Gaps = 8/518 (1%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           ++Y  V++ C+       G+++H+ ++  G    + +G  LV  Y+ C G     + +  
Sbjct: 370 NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNC-GDLVQGRKIFD 428

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           +   D    WN L+S   + G   +S  LFK M+  G   +  T   +L+    L  ++ 
Sbjct: 429 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 488

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
            + VH   +   F  + +V  +L++ Y K   +E A  LFD++S+ D V WN MI+    
Sbjct: 489 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +GF    LE+ + M+  G   DL T ++ + + + + N+  G+ +H   ++     +V  
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVF 608

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N+L+DMY +C +LN A ++F  +   T+VSW+S I  YV      +A+ LF EM+ +GV
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
             D  T+ +I+ AC    +L+  + +H Y +K G+ S   V  A+   YAKCG +E A  
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 728

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F   KI  KDI++WN+MI  Y+++   ++  +L+  M Q   +PD IT   +L AC   
Sbjct: 729 VF--SKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGL 785

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             +++GR I   +    GY        ++V++  + G +  A +L+ DM  K D   W  
Sbjct: 786 AALDKGREIHGHILRR-GYFSDLHVACALVDMYAKCGLLVLA-QLLFDMIPKKDLISWTV 843

Query: 612 LLSACKMH--SETELAELTAEKLISMEPENAGNYVLLS 647
           +++   MH      ++     ++  +EP+ +   V+L+
Sbjct: 844 MIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILN 881



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 227/462 (49%), Gaps = 9/462 (1%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N+ I+   + G    + EL  L + +  E    +  ++L+   E KSLE G+ VH V + 
Sbjct: 340 NAKINKFCEMGDLRNAIEL--LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           +    D ++   L+ MY     L   + +FDK+ +    +WN+++S Y + G  +ES+ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M + G   + +T    +   + +  ++  K++H  VL+ G     +V NSLI  Y +
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              +  A  +FD +    VVSW+SMI G V +  S   L +F +M + GVEVD  T++++
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L A  NIG L   + LHG+ +K   +     +  +   Y+KCG +  A E+F   K+   
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF--VKMGDT 635

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
            I++W S I+AY + G +S    L+ +M+   VRPD+ T   ++ AC  +  +++GR + 
Sbjct: 636 TIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 695

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             + ++ G   +     +++N+  + G ++EAR +   +P K D   W  ++     +S+
Sbjct: 696 SYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG---YSQ 750

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
             L     E  + M+ +   + + ++ +  A      + K R
Sbjct: 751 NSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGR 792


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/682 (32%), Positives = 391/682 (57%), Gaps = 14/682 (2%)

Query: 38  LLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           +LN C + +++ +    +  I+  G   +L + + LI+ +   G +  + +VFN++   +
Sbjct: 211 MLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRD 270

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
            + + +++  L++  ++++   +++ M  + + P +  +  ++++C+       G+++HA
Sbjct: 271 LITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHA 330

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQN 211
           ++ ++G D+   VG AL+  Y KC G  E+   +    F  +K R    W ++I+   Q+
Sbjct: 331 RMKEVGLDTEIYVGTALLSMYTKC-GSMEDALEV----FNLVKGRNVVSWTAMIAGFAQH 385

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+ E++F  F  M   G E +  T +++L +     +L+ GR +H   + + +  D  V 
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TALLSMY+K  SL DA+ +F+++S ++ V WN MI+AY Q      ++     +++ G +
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T  + ++   +   +E GK + + ++R G +  + + N+L+ M+  C DL  A  +
Sbjct: 506 PDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNL 565

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +  + +VSW+++I G+V H ++  A   F  M+  GV+ D +T   +L AC +  AL
Sbjct: 566 FNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEAL 625

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              + LH    +  L+    V T +   Y KCG I+ A  +F    +  K++ +W SMI+
Sbjct: 626 TEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF--HNLPKKNVYSWTSMIT 683

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+HG   +  +L+ QM+Q  V+PD ITF+G L+AC +AGL++EG   F+ MK+ +  E
Sbjct: 684 GYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIE 742

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P  EHY  MV+L GRAG + EA E +  M  KPD+R+WG LL AC++H + ELAE  A+K
Sbjct: 743 PRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQK 802

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
            + ++P + G YV+LSNIYAAAG W  V KMR  + DRG+ K PG SWIE+   VH F +
Sbjct: 803 KLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCS 862

Query: 692 ADQSHPQADAIYTILGILELEI 713
            D++HPQ + I+  LG L +E+
Sbjct: 863 DDKTHPQIEEIHAELGRLHMEM 884



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 158/604 (26%), Positives = 313/604 (51%), Gaps = 13/604 (2%)

Query: 28  PHMT---ATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           PH+     T+S SLL LC   ++L   ++IH  +I    +  ++ + + LI  YA  G  
Sbjct: 98  PHIQIHRQTYS-SLLQLCIKHKNLGDGERIH-NHIKFSKIQPDIFMWNMLISMYAKCGNT 155

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           + ++Q+F+ +   +   +  +L    +   YE+   +++QM    + P + T+ +++ +C
Sbjct: 156 NSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNAC 215

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
           +   +   G ++ + ++  G+D+   VG AL+  +IKC G  +  K       +DL + W
Sbjct: 216 ADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLIT-W 274

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
            S+I+   ++ + +++  LF++M  EG + D    ++LL++    ++LE G+ VH     
Sbjct: 275 TSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKE 334

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
                ++ V TALLSMY+K  S+EDA  +F+ +  ++ V W  MI+ + Q G  +E+   
Sbjct: 335 VGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLF 394

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M+ SG   +  T ++ + + S    ++ G+Q+H  +++ G      V  +L+ MY +
Sbjct: 395 FNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK 454

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C  L  AR +F+ +  + VV+W++MI  YV H++   A+  F  +  EG++ D  T  +I
Sbjct: 455 CGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSI 514

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L  C +  ALE  K++    ++ G  S   +  A+   +  CG +  A  LF++  +  +
Sbjct: 515 LNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFND--MPER 572

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+++WN++I+ + +HG+    F  +  M++S V+PD ITF GLL AC +   + EGR + 
Sbjct: 573 DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLH 632

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             + E+   +        ++++  + G +D+A  +  ++P K +   W  +++    H  
Sbjct: 633 ALITEA-ALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGR 690

Query: 622 TELA 625
            + A
Sbjct: 691 GKEA 694



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 267/533 (50%), Gaps = 9/533 (1%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N+      L  LSK G+  + +LV   +    +     TY  +++ C    +   GE+IH
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 155 AQV--VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
             +   K+  D F  + + L+  Y KC      ++   +   KD+ S WN L+   VQ+ 
Sbjct: 128 NHIKFSKIQPDIF--MWNMLISMYAKCGNTNSAKQIFDEMPDKDVYS-WNLLLGGYVQHR 184

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           + E++F L + M  +G + D  T + +L +  + K+++ G  +  + + + +  DL V T
Sbjct: 185 RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGT 244

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL++M+ K   ++DA  +F+ +  +D + W  MI+   +    K++  L   M   G + 
Sbjct: 245 ALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP 304

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D    ++ + + +  + +E GK++HA +   G D ++ V  +L+ MY +C  +  A ++F
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVF 364

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + VK + VVSW++MI G+  H +  EA   F++M   G+E + VT ++IL AC    AL+
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +H   +K G  +   V TA+   YAKCG +  A  +F  E+I  ++++ WN+MI+A
Sbjct: 425 QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVF--ERISKQNVVAWNAMITA 482

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y +H  +      +  + +  ++PD  TF  +L  C +   +E G+ + + +    G+E 
Sbjct: 483 YVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWV-QSLIIRAGFES 541

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                 ++V++    G +  A  L  DMP + D   W  +++    H E + A
Sbjct: 542 DLHIRNALVSMFVNCGDLMSAMNLFNDMPER-DLVSWNTIIAGFVQHGENQFA 593


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/698 (33%), Positives = 397/698 (56%), Gaps = 20/698 (2%)

Query: 20  RFPANQTRPHMTATHSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANL 78
           + P +  +P       F SL + C      +++HA  ++   +  N I S  L++ YA+L
Sbjct: 63  QIPFHWRQPAKNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFI-SIRLVNLYASL 121

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE-DTYPFV 137
           G +SLS+  F+ I   +   + +++    + G + + +  + Q+ L + + A+  T+P V
Sbjct: 122 GDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPV 181

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           +++C  L+D   G KIH  V KLGF     V  +L+  Y +   GF    G+ +  F D+
Sbjct: 182 LKACQTLVD---GRKIHCWVFKLGFQWDVFVAASLIHMYSRF--GF---VGIARSLFDDM 233

Query: 198 KSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
             R    WN++IS  +QNG + ++ ++   MR+EG   DS T+ ++L    +L  +    
Sbjct: 234 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           ++H   +      +L V+ AL++MY+K  +L DA+ +F +M  +D V WN +I+AY Q+ 
Sbjct: 294 LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVH 372
            P  +      M  +G   DL T ++  S  +  ++ +  + +H  ++R G   + V + 
Sbjct: 354 DPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG 413

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK-LEGV 431
           N+++DMY +   ++ A K+F+ +  K VVSW+++I GY  +  + EA+ ++  M+    +
Sbjct: 414 NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREI 473

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           +++  T ++IL A  ++GAL+    +HG+ +K  L+    V T +   Y KCG +  A  
Sbjct: 474 KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMC 533

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           LF +   +S   + WN++IS +  HG   +  KL+ +M+   V+PD +TF+ LL+AC ++
Sbjct: 534 LFYQVPRESS--VPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHS 591

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           GLV+EG+  F  M+E YG +PS +HY  MV+LLGRAG ++ A + +KDMP  PDA +WG 
Sbjct: 592 GLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGA 650

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LL AC++H   EL +  +++L  ++ EN G YVLLSNIYA  GKW GV K+R+  R+RGL
Sbjct: 651 LLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 710

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           KKTPG S IE+ + V  F+  +QSHP+   IY  L IL
Sbjct: 711 KKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRIL 748


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/707 (33%), Positives = 389/707 (55%), Gaps = 20/707 (2%)

Query: 19  LRFPANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSY 75
           ++  +   R  +      S+L LC   + L+   ++H+  I  +G+  + +L + L+  Y
Sbjct: 44  MKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHS-IISSNGMAIDEVLGAKLVFMY 102

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
            N G L   +++F+ I +    L+  ++   +K G Y +++ ++++M  Q +    D+Y 
Sbjct: 103 VNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKM--QELGIRGDSYT 160

Query: 136 F--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           F  V++  +        +++H  V+KLGF S++ V ++L+  Y KC G  E+ + +    
Sbjct: 161 FTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKC-GEVESARIL---- 215

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           F +L  R    WNS+IS    NG S    E F  M   G + DS TL+N+L +   + +L
Sbjct: 216 FDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNL 275

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            LGR +H   V + F   +  N  LL MYSK  +L  A  +F KM +   V W  +I+A+
Sbjct: 276 TLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAH 335

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            + G   E++ L   M   G R D++   + V + +   +++ G+++H ++ +N     +
Sbjct: 336 VREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNL 395

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V N+L++MY +C  +  A  IF  +  K +VSW++MI GY  +    EAL+LF +M+ +
Sbjct: 396 PVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ 455

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            ++ D VT+  +LPAC  + ALE  + +HG+ ++ G  S   V  A+   Y KCG + +A
Sbjct: 456 -LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLA 514

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            +LFD   I  KD+I W  MI+ Y  HG   +    + +M+ + + P+  +F  +L AC 
Sbjct: 515 QQLFD--MIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACT 572

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           ++GL++EG  +F  MK     EP  EHYA MV+LL R+G++  A + ++ MP KPDA +W
Sbjct: 573 HSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIW 632

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LLS C++H + ELAE  AE +  +EPEN   YVLL+N+YA A KW  V K++  +   
Sbjct: 633 GALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKG 692

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           GLK   GCSWIE+    + F+A D SHPQA  I ++L  L +++  G
Sbjct: 693 GLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRG 739


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/674 (35%), Positives = 375/674 (55%), Gaps = 79/674 (11%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDS---YANLGLLSLSQQVFNSI 91
           S SLL+ C+  Q L+ IHA+ +I  GLH      S LI+      +   L  +  VF +I
Sbjct: 5   SLSLLHNCKTLQSLRMIHAQ-MIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
             PN L++ T+ +  +   +    L +Y  M    + P   T+PF+++SC+    F  G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQ 123

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           +IH  V+KLG+D         ++ Y+                         SLIS+ VQN
Sbjct: 124 QIHGHVLKLGYD---------LDLYVH-----------------------TSLISMYVQN 151

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+ E + ++          FD  +                              +D+   
Sbjct: 152 GRLEDARKV----------FDQSSH-----------------------------RDVVSY 172

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TAL++ Y+    +  A+ +FD++  KD V WN MIS Y ++G  KE+LEL   M+++  R
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T ++ VS+ +   +IE G+Q+H+ +  +G    + + N+LID+Y +C ++  A  +
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 292

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +  K V+SW+++I GY   +   EAL LF EM   G   + VT+++ILPAC ++GA+
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 352

Query: 452 EHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           E  +++H Y  K   G+ + SS  T++   YAKCG IE A ++FD   I ++ + +WN+M
Sbjct: 353 EIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDS--ILNRSLSSWNAM 410

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  +A HG  +  F ++++M+++++ PD ITF+GLL+AC ++G+++ GR IF+ MKE Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYK 470

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P  EHY  M++LLG +G   EA E++  M  +PD  +W  LL ACKM++  EL E  A
Sbjct: 471 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYA 530

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           + LI +EP+N G+YVLLSNIYA AG+WN VAK+R  L D+G+KK PGCS IEI  +VHEF
Sbjct: 531 QNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 690 WAADQSHPQADAIY 703
              D+ HP+   IY
Sbjct: 591 IIGDKFHPRNREIY 604


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 348/602 (57%), Gaps = 18/602 (2%)

Query: 123 ALQSMYPAEDTYPFV------IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           A  +M PA  + P +      ++ C+   D  +G  +HAQ+   G         AL   Y
Sbjct: 211 AFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMY 270

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRME-GAEF 231
            KC        G  +R F  + +R    WN+L++   +NG +E +  +   M+ E G   
Sbjct: 271 AKC-----RRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERP 325

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+ TL+++L +  + ++L   R VH  AV   F + ++V+TA+L +Y K  +++ A+ +F
Sbjct: 326 DAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVF 385

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D M D++ V WN MI  Y ++G   E+L L   MV  G      + +AA+ +   +  ++
Sbjct: 386 DGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLD 445

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            G+++H  ++R G +  V+V N+LI MYC+C+  + A ++FD +  KT VSW++MI G  
Sbjct: 446 EGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCT 505

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +  S +A+RLFS M+LE V+ D  T+++I+PA  +I      +++HGYS++L L+    
Sbjct: 506 QNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVY 565

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V TA+   YAKCG + +A  LF+  +   + +ITWN+MI  Y  HG      +L+ +MK 
Sbjct: 566 VLTALIDMYAKCGRVSIARSLFNSAR--DRHVITWNAMIHGYGSHGSGKVAVELFEEMKS 623

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           S   P+  TFL +L+AC +AGLV+EG+  F  MKE YG EP  EHY +MV+LLGRAG + 
Sbjct: 624 SGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLH 683

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EA   ++ MP +P   V+G +L ACK+H   ELAE +A+++  +EPE    +VLL+NIYA
Sbjct: 684 EAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYA 743

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
            A  W  VA++RT +  +GL+KTPG S +++   +H F++   +H QA  IY  L  L  
Sbjct: 744 NASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIE 803

Query: 712 EI 713
           EI
Sbjct: 804 EI 805



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 171/338 (50%), Gaps = 24/338 (7%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C + Q L   +++HA + +  G  + + +S+ ++D Y   G +  +++VF+ +  
Sbjct: 332 SVLPACADAQALGACREVHA-FAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQD 390

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            NS+ +  ++K  ++ G+  + L ++K+M  + +   + +    + +C  L     G ++
Sbjct: 391 RNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRV 450

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL--KSR--WNSLISLAV 209
           H  +V++G +S  +V +AL+  Y KC         +  + F +L  K+R  WN++I    
Sbjct: 451 HELLVRIGLESNVNVMNALITMYCKC-----KRTDLAAQVFDELGYKTRVSWNAMILGCT 505

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           QNG SE +  LF  M++E  + DS TL++++ +  ++      R +H  ++     +D+ 
Sbjct: 506 QNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVY 565

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V TAL+ MY+K   +  A+ LF+   D+  + WN MI  Y   G  K ++EL   M  SG
Sbjct: 566 VLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSG 625

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              +  T ++ +S+ S           HA ++  G +Y
Sbjct: 626 KVPNETTFLSVLSACS-----------HAGLVDEGQEY 652


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/673 (33%), Positives = 374/673 (55%), Gaps = 9/673 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL LCE  +   +   +H+ Y+        + L + L+  +   G L  +  VF  +  
Sbjct: 99  ALLRLCEWKRAASEGSRVHS-YVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAE 157

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +   +  ++   +K G +++ L +Y +M    + P   T+P V+R+C  L D   G ++
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  V++ GF+S  DV +AL+  Y+KC G   + + +  R  +  +  WN++IS   +N  
Sbjct: 218 HLHVIRYGFESDVDVVNALITMYVKC-GDIFSARLVFDRMPRRDRISWNAMISGYFENDV 276

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             +   LF +MR    + D  T+ +++ +   L    LGR VH   + + F  ++SVN +
Sbjct: 277 CLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNS 336

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ M+S +   ++A+M+F KM  KD V W  MIS Y ++G P++++E    M   G   D
Sbjct: 337 LIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T  + +S+ + +  ++ G  +H    R G    V V NSLIDMY +C  ++ A ++F 
Sbjct: 397 EITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFH 456

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K V+SW+S+I G   + +S EAL  F +M L  ++ + VT++++L AC  IGAL  
Sbjct: 457 RIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSC 515

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H ++++ GL     +  A+   Y +CG +E A   F+  +   KD+ +WN +++ Y
Sbjct: 516 GKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE---KDVASWNILLTGY 572

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+ G      +L+ +M +SDV PD ITF  LL AC  +G+V +G   F+ M+  +   P+
Sbjct: 573 AQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPN 632

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYAS+V+LLGRAG +++A E +K MP  PD  +WG LL+AC+++   EL EL A+ + 
Sbjct: 633 LKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIF 692

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            M+ ++ G Y+LL N+YA +GKW+ VA++R  +R+  L   PGCSW+E+   VH F   D
Sbjct: 693 EMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGD 752

Query: 694 QSHPQADAIYTIL 706
             HPQ   I  +L
Sbjct: 753 DFHPQIKEINAVL 765



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 168/622 (27%), Positives = 290/622 (46%), Gaps = 37/622 (5%)

Query: 13  SGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLI 72
           S  +  +    N   PH + TH    LN   N      I  R I L   H+  +L+ +  
Sbjct: 4   SAKIPAIHLQTNLPNPHHSKTHKPKPLNFSRN------IQTRQISLRKHHEISVLNPS-- 55

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
                    S++ Q      +PNSL+    LK     G+ EK L+    M    +   E+
Sbjct: 56  ---------SITAQ------NPNSLILELCLK-----GDLEKALIHLDSMQELQVSVEEE 95

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  ++R C        G ++H+ V K        +G+AL+  +++     E      + 
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +DL S WN L+    + G  +++  L+  M   G   D  T   +LR+   L  L  G
Sbjct: 156 AERDLFS-WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARG 214

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH   +   F  D+ V  AL++MY K   +  A+++FD+M  +DR+ WN MIS Y+++
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               E L L   M       DL T  + +S+   + +   G+++H  V++ G   +VSV+
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           NSLI M+      + A  +F  ++ K +VSW++MI GY  +    +A+  ++ M+ EGV 
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV 394

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D +TI ++L AC  +G L+    LH ++ + GL S   V  ++   Y+KC CI+ A E+
Sbjct: 395 PDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEV 454

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F   +I +K++I+W S+I     +    +    + QM  S ++P+ +T + +L+AC   G
Sbjct: 455 F--HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIG 511

Query: 553 LVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
            +  G+ I    ++   G++    +  +++++  R G M+ A         + D   W  
Sbjct: 512 ALSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQFNSC--EKDVASWNI 567

Query: 612 LLSACKMHSETELAELTAEKLI 633
           LL+      +  LA     K+I
Sbjct: 568 LLTGYAQQGKGGLAVELFHKMI 589


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/673 (33%), Positives = 374/673 (55%), Gaps = 9/673 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL LCE  +   +   +H+ Y+        + L + L+  +   G L  +  VF  +  
Sbjct: 99  ALLRLCEWKRAASEGSRVHS-YVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAE 157

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +   +  ++   +K G +++ L +Y +M    + P   T+P V+R+C  L D   G ++
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  V++ GF+S  DV +AL+  Y+KC G   + + +  R  +  +  WN++IS   +N  
Sbjct: 218 HLHVIRYGFESDVDVVNALITMYVKC-GDIFSARLVFDRMPRRDRISWNAMISGYFENDV 276

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             +   LF +MR    + D  T+ +++ +   L    LGR VH   + + F  ++SVN +
Sbjct: 277 CLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNS 336

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ M+S +   ++A+M+F KM  KD V W  MIS Y ++G P++++E    M   G   D
Sbjct: 337 LIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T  + +S+ + +  ++ G  +H    R G    V V NSLIDMY +C  ++ A ++F 
Sbjct: 397 EITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFH 456

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K V+SW+S+I G   + +S EAL  F +M L  ++ + VT++++L AC  IGAL  
Sbjct: 457 RIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSC 515

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H ++++ GL     +  A+   Y +CG +E A   F+  +   KD+ +WN +++ Y
Sbjct: 516 GKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE---KDVASWNILLTGY 572

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+ G      +L+ +M +SDV PD ITF  LL AC  +G+V +G   F+ M+  +   P+
Sbjct: 573 AQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPN 632

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYAS+V+LLGRAG +++A E +K MP  PD  +WG LL+AC+++   EL EL A+ + 
Sbjct: 633 LKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIF 692

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            M+ ++ G Y+LL N+YA +GKW+ VA++R  +R+  L   PGCSW+E+   VH F   D
Sbjct: 693 EMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGD 752

Query: 694 QSHPQADAIYTIL 706
             HPQ   I  +L
Sbjct: 753 DFHPQIKEINAVL 765



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 168/622 (27%), Positives = 290/622 (46%), Gaps = 37/622 (5%)

Query: 13  SGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLI 72
           S  +  +    N   PH + TH    LN   N      I  R I L   H+  +L+ +  
Sbjct: 4   SAKIPAIHLQTNLPNPHHSKTHKPKPLNFSRN------IQTRQISLRKHHEISVLNPS-- 55

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
                    S++ Q      +PNSL+    LK     G+ EK L+    M    +   E+
Sbjct: 56  ---------SITAQ------NPNSLILELCLK-----GDLEKALIHLDSMQELQVSVEEE 95

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  ++R C        G ++H+ V K        +G+AL+  +++     E      + 
Sbjct: 96  TYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKM 155

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +DL S WN L+    + G  +++  L+  M   G   D  T   +LR+   L  L  G
Sbjct: 156 AERDLFS-WNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARG 214

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH   +   F  D+ V  AL++MY K   +  A+++FD+M  +DR+ WN MIS Y+++
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               E L L   M       DL T  + +S+   + +   G+++H  V++ G   +VSV+
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           NSLI M+      + A  +F  ++ K +VSW++MI GY  +    +A+  ++ M+ EGV 
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVV 394

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D +TI ++L AC  +G L+    LH ++ + GL S   V  ++   Y+KC CI+ A E+
Sbjct: 395 PDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEV 454

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F   +I +K++I+W S+I     +    +    + QM  S ++P+ +T + +L+AC   G
Sbjct: 455 F--HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIG 511

Query: 553 LVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
            +  G+ I    ++   G++    +  +++++  R G M+ A         + D   W  
Sbjct: 512 ALSCGKEIHAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQFNSC--EKDVASWNI 567

Query: 612 LLSACKMHSETELAELTAEKLI 633
           LL+      +  LA     K+I
Sbjct: 568 LLTGYAQQGKGGLAVELFHKMI 589


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/658 (34%), Positives = 366/658 (55%), Gaps = 7/658 (1%)

Query: 58  LHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLL 117
           L GL +++ + S+LI  YA  G LS +Q +F++I   +S+L+  +L    K G+    + 
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCS--CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           ++ +M    + P   T+  V+  C+   +LD   G ++H   V  G +    V + L+  
Sbjct: 146 IFLEMRHSEIKPNSVTFACVLSVCASEAMLDL--GTQLHGIAVSCGLELDSPVANTLLAM 203

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           Y KC       K        DL S WN +IS  VQNG   ++  LF+ M   G + DS T
Sbjct: 204 YSKCQCLQAARKLFDTSPQSDLVS-WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSIT 262

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
             + L    EL SL+  + +H   +      D+ + +AL+ +Y K   +E A+ +  + S
Sbjct: 263 FASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSS 322

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
             D VV   MIS Y  +G  KE+LE    +V+   +    T  +   + + +  +  GK+
Sbjct: 323 SFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H ++++   D +  V ++++DMY +C  L+ A ++F+ +  K  + W+SMI     + +
Sbjct: 383 LHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGR 442

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA+ LF +M +EG   D V+I   L AC N+ AL + K +HG  +K  L S     ++
Sbjct: 443 PGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESS 502

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG +  +  +FD  ++  ++ ++WNS+ISAY  HGD  +C  L+ +M ++ ++
Sbjct: 503 LIDMYAKCGNLNFSRRVFD--RMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +TFLG+++AC +AG V+EG   +  M E YG     EHYA + ++ GRAG +DEA E
Sbjct: 561 PDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFE 620

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            +  MPF PDA VWG LL AC +H   ELAE+ ++ L  ++P N+G YVLL+N+ A AGK
Sbjct: 621 TINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGK 680

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           W  V K+R+ +++RG++K PG SWIE+    H F AAD SHP    IY++L  L LE+
Sbjct: 681 WRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLEL 738



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 274/549 (49%), Gaps = 9/549 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G L  ++ +F ++    +  +  +++  +  G++   LL Y +M    + P + T+
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P+V+++C  L     G+ +H  V  +G      VG +L++ Y + +G   + + +     
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAE-NGHLSDAQYLFDNIP 120

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     WN +++  V+NG S  + ++F  MR    + +S T   +L        L+LG  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H +AV      D  V   LL+MYSK   L+ A+ LFD     D V WN +IS Y Q+G 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E+  L   M+ +G + D  T  + +  ++ + +++  K++H  ++R+     V + ++
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LID+Y +C D+  A+KI     +   V  ++MI GYV + ++ EAL  F  +  E ++  
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VT  +I PA   + AL   K LHG  +K  L+    V +AI   YAKCG +++A  +F+
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             +I  KD I WNSMI++ +++G   +   L+ QM     R D ++  G L+AC N   +
Sbjct: 421 --RITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPAL 478

Query: 555 EEGRIIFKEMKESYGYEPSQEHYA--SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
             G+ I   M +        + YA  S++++  + G+++ +R +   M  + +   W  +
Sbjct: 479 HYGKEIHGLMIKG---PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVS-WNSI 534

Query: 613 LSACKMHSE 621
           +SA   H +
Sbjct: 535 ISAYGNHGD 543



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY +  SL+DAK LF  +       WN MI  +   G    +L   + M+ +G   D +T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               V +   +K+++ GK +H  V   G    V V +SLI +Y E   L+ A+ +FD++ 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K  V W+ M+ GYV +  S  A+++F EM+   ++ + VT   +L  C +   L+    
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           LHG ++  GL   S V   +   Y+KC C++ A +LFD       D+++WN +IS Y ++
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP--QSDLVSWNGIISGYVQN 238

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           G   +   L+  M  + ++PD ITF   L  CVN  L        K  KE +GY
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFL-PCVNELLS------LKHCKEIHGY 285



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 175/351 (49%), Gaps = 3/351 (0%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +H ++IH  YII H +  ++ L S LID Y     + ++Q++    +S ++++  T++  
Sbjct: 277 KHCKEIHG-YIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISG 335

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
               G+ ++ L  ++ +  + M P   T+  +  + + L     G+++H  ++K   D  
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEK 395

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             VG A+++ Y KC G  +    +  R  +     WNS+I+   QNG+  ++  LF+ M 
Sbjct: 396 CHVGSAILDMYAKC-GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMG 454

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           MEG  +D  ++   L +   L +L  G+ +H + +      DL   ++L+ MY+K  +L 
Sbjct: 455 MEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLN 514

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            ++ +FD+M +++ V WN +ISAY   G  KE L L   M+R+G + D  T +  +S+  
Sbjct: 515 FSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574

Query: 346 TMKNIEWG-KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
               ++ G +  H      G   ++  +  + DM+     L+ A +  +S+
Sbjct: 575 HAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSM 625


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/612 (35%), Positives = 350/612 (57%), Gaps = 3/612 (0%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +LK  +K    +  L  + +M   S+ P    + ++++ C    D   G++IH  V+  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           F         +V  Y KC     +   M  R  +     WN++IS   QNG ++ +  L 
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQ-INDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M  EG   DS T++++L +  + + L +G  VH   + + F   ++V+TAL+ MYSK 
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            S+  A+++FD M  +  V WN MI  Y QSG  + ++ +   M+  G +    T + A+
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + + + ++E GK +H  V +   D  VSV NSLI MY +C+ ++ A  IF +++ KT+V
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW++MI GY  +    EAL  F EM+   ++ D  T+++++PA   +      K++HG  
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           ++  L+    V TA+   YAKCG I  A +LFD   ++++ +ITWN+MI  Y  HG    
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFD--MMNARHVITWNAMIDGYGTHGLGKT 417

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             +L+ +MK+  ++P+ ITFL  L+AC ++GLVEEG   F+ MK+ YG EP+ +HY +MV
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +LLGRAG +++A + ++ MP KP   V+G +L ACK+H   +L E  A ++  + P++ G
Sbjct: 478 DLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGG 537

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            +VLL+NIYA A  W  VAK+RT +   GL+KTPGCS +EIG  VH F++   SHPQ+  
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKK 597

Query: 702 IYTILGILELEI 713
           IY+ L  L  EI
Sbjct: 598 IYSYLETLVDEI 609



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y++  G    + +S+ L+D Y+  G +S+++ +F+ +     + + +++    + G+ E 
Sbjct: 156 YVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEG 215

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            +L++++M  + + P   T    + +C+ L D   G+ +H  V +L  DS   V ++L+ 
Sbjct: 216 AMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLIS 275

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y KC         +    FK+L+++    WN++I    QNG   ++   F  M+    +
Sbjct: 276 MYSKC-----KRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIK 330

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            DS T+++++ +  EL      + +H + +     K++ V TAL+ MY+K  ++  A+ L
Sbjct: 331 PDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKL 390

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           FD M+ +  + WN MI  Y   G  K S+EL   M +   + +  T + A+S+ S    +
Sbjct: 391 FDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLV 450

Query: 351 EWG 353
           E G
Sbjct: 451 EEG 453


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/634 (34%), Positives = 360/634 (56%), Gaps = 14/634 (2%)

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F+ +    +L +  ++  L+K G++  ++ ++K+M    +     T+  V +S S L   
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSR----WN 202
             GE++H  ++K GF   + VG++LV FY+K      N++    RK F ++  R    WN
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLK------NQRVDSARKVFDEMTERDVISWN 114

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           S+I+  V NG +EK   +F  M + G E D  T++++     + + + LGR VH + V +
Sbjct: 115 SIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKA 174

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F ++      LL MYSK   L+ AK +F +MSD+  V +  MI+ Y + G   E+++L 
Sbjct: 175 CFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLF 234

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M   G   D++T  A ++  +  + ++ GK++H  +  N   + + V N+L+DMY +C
Sbjct: 235 EEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKC 294

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINI 441
             +  A  +F  ++ K ++SW+++I GY  +  + EAL LF+ +  E     D  T+  +
Sbjct: 295 GSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACV 354

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           LPAC ++ A +  + +HGY M+ G  S   V  ++   YAKCG + +A  LFD+  I SK
Sbjct: 355 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD--IASK 412

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+++W  MI+ Y  HG   +   L+ QM+Q+ +  D I+F+ LL AC ++GLV+EG   F
Sbjct: 413 DLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFF 472

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             M+     EP+ EHYA +V++L R G + +A   +++MP  PDA +WG LL  C++H +
Sbjct: 473 NIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHD 532

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            +LAE  AEK+  +EPEN G YVL++NIYA A KW  V ++R  +  RGL+K PGCSWIE
Sbjct: 533 VKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 592

Query: 682 IGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           I   V+ F A D S+P+ + I   L  +   ++E
Sbjct: 593 IKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 626



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 211/409 (51%), Gaps = 11/409 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H  +I+  G  +   + ++L+  Y     +  +++VF+ +T  + + + +I+     
Sbjct: 64  EQLHG-FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 122

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  EK L V+ QM +  +     T   V   C+       G  +H+  VK  F   D  
Sbjct: 123 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 182

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
            + L++ Y KC G  ++ K +    F+++  R    + S+I+   + G + ++ +LF+ M
Sbjct: 183 CNTLLDMYSKC-GDLDSAKAV----FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 237

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
             EG   D  T+  +L      + L+ G+ VH     +D   D+ V+ AL+ MY+K  S+
Sbjct: 238 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL-MCMVRSGFRADLFTAIAAVSS 343
           ++A+++F +M  KD + WN +I  Y ++ +  E+L L  + +    F  D  T    + +
Sbjct: 298 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 357

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +++   + G+++H  ++RNG      V NSL+DMY +C  L  A  +FD + +K +VSW
Sbjct: 358 CASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 417

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + MI GY  H    EA+ LF++M+  G+E D ++ +++L AC + G ++
Sbjct: 418 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 466


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/697 (34%), Positives = 377/697 (54%), Gaps = 47/697 (6%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  ++ L ++LI+ Y+  G ++  +QVF  +T  + + + +++   +      K    +
Sbjct: 108 GLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTF 167

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           ++M   ++ P   T+  ++++C+         +IH  V   G ++   V  AL+  Y KC
Sbjct: 168 ERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC 227

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
                 E  +    F+ +K R    W ++I    Q+ K  ++FEL++ M   G   ++ T
Sbjct: 228 -----GEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVT 282

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
            ++LL S    ++L  GR +H          D+ V  AL++MY K   ++DA+  FD+MS
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 296 DKDRVVWNIMISAYYQSGFP-KESL----ELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
            +D + W+ MI+ Y QSG+  KESL    +LL  M R G   +  T ++ + + S    +
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGAL 402

Query: 351 EWGKQMHANVLRNG--SDY--QVSVHN---------------------------SLIDMY 379
           E G+Q+HA + + G  SD   Q ++ N                           SL+ MY
Sbjct: 403 EQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMY 462

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C DL  A K+F  + T+ VVSW+ MI GY       +   L S MK+EG + D VTII
Sbjct: 463 IKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTII 522

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +IL AC  + ALE  K +H  ++KLGL S + V T++   Y+KCG +  A  +FD  KI 
Sbjct: 523 SILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFD--KIS 580

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           ++D + WN+M++ Y +HG   +   L+ +M +  V P+ ITF  +++AC  AGLV+EGR 
Sbjct: 581 NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGRE 640

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           IF+ M+E +  +P ++HY  MV+LLGRAG + EA E ++ MP +PD  VW  LL ACK H
Sbjct: 641 IFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSH 700

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              +LAE  A  ++ +EP NA  YV LSNIYA AG+W+   K+R  + D+GLKK  G S 
Sbjct: 701 DNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESS 760

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           IEI   +H F A D +HP+ D+I+  L +L  E+ E 
Sbjct: 761 IEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEA 797



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/623 (28%), Positives = 301/623 (48%), Gaps = 44/623 (7%)

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +  P S+  G + + L K G  ++ + +   +  + +    +TY  +I  C+ L  F  G
Sbjct: 39  LAGPRSVSGGEVWR-LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDG 97

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           + +H Q+ +LG      +G++L+ FY K       E+   +   +D+ + W+S+I+    
Sbjct: 98  KMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVT-WSSMIAAYAG 156

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           N    K+F+ F+ M+    E +  T +++L++      LE  R +H V   S    D++V
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAV 216

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            TAL++MYSK   +  A  +F KM +++ V W  +I A  Q     E+ EL   M+++G 
Sbjct: 217 ATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI 276

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             +  T ++ ++S +T + +  G+++H+++   G +  V V N+LI MYC+C  +  AR+
Sbjct: 277 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARE 336

Query: 391 IFDSVKTKTVVSWSSMIKGYV----THDQSL-EALRLFSEMKLEGVEVDFVTIINILPAC 445
            FD +  + V+SWS+MI GY        +SL E  +L   M+ EGV  + VT ++IL AC
Sbjct: 337 TFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKAC 396

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA---------------- 489
              GALE  + +H    K+G  S  S+ TAIF  YAKCG I  A                
Sbjct: 397 SVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWA 456

Query: 490 ---------GELFDEEKI----DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
                    G+L   EK+     ++++++WN MI+ YA+ GD ++ F+L + MK    +P
Sbjct: 457 SLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQP 516

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D +T + +L AC     +E G+++  E  +  G E       S++ +  + G + EAR  
Sbjct: 517 DRVTIISILEACGALSALERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGEVTEAR-T 574

Query: 597 VKDMPFKPDARVWGPLLSACKMHS-ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           V D     D   W  +L+    H    E  +L    L    P N    +  + + +A G+
Sbjct: 575 VFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNE---ITFTAVISACGR 631

Query: 656 WNGVAKMRTFLR--DRGLKKTPG 676
              V + R   R      +  PG
Sbjct: 632 AGLVQEGREIFRIMQEDFRMKPG 654


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/677 (34%), Positives = 370/677 (54%), Gaps = 16/677 (2%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
            +LLN       L QI A+ +ILHG+H +L   + L   + +LG ++  +Q+FN ++ P+
Sbjct: 18  LTLLNNATTLSQLLQIQAQ-LILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPD 76

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIH 154
             L+  +++  S  G  + ++ +Y  +  ++ + P   TY F I + S L D   G  +H
Sbjct: 77  LFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLH 136

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAV 209
           A  +  G  S   VG A+V+ Y      F+  +  + RK  D+        WN++IS   
Sbjct: 137 AHSIVDGVASNLFVGSAIVDLY------FKFTRAELARKVFDVMPERDTVLWNTMISGFS 190

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           +N   E S  +F  M   G  FDS TL  +L +  EL+   LG  + C+A       D+ 
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V T L+S+YSK       ++LFD++   D + +N MIS Y  +   + ++ L   ++ SG
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            R +  T +  +       +++  + +    L+ G   Q SV  +L  +YC   ++  AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++FD    K++ SW++MI GY  +  +  A+ LF EM +  +  + VT+ +IL AC  +G
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLG 429

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL   K++HG      L S   V+TA+   YAKCG I  A +LFD   +  K+++TWN+M
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD--LMVDKNVVTWNAM 487

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ Y  HG   +  KL+ +M QS + P  +TFL +L AC ++GLV EG  IF  M  +YG
Sbjct: 488 ITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYG 547

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
           ++P  EHYA MV++LGRAG +  A E ++ MP +P   VWG LL AC +H  TE+A + +
Sbjct: 548 FQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVAS 607

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           ++L  ++PEN G YVLLSNIY+    +   A +R  ++ R L KTPGC+ IEI    + F
Sbjct: 608 KRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVF 667

Query: 690 WAADQSHPQADAIYTIL 706
            + D+SHPQA AI+ +L
Sbjct: 668 TSGDRSHPQATAIFEML 684


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/677 (34%), Positives = 369/677 (54%), Gaps = 16/677 (2%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
            +LLN       L QI A+ +ILHG+H +L   + L   + +LG ++  +Q+FN ++ P+
Sbjct: 18  LTLLNNATTLSQLLQIQAQ-LILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPD 76

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
             L+  +++  S  G  + ++ +Y  +    ++ P   TY F I + S L D   G  +H
Sbjct: 77  LFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLH 136

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAV 209
           A  +  G  S   VG A+V+ Y      F+  +  + RK  D+        WN++IS   
Sbjct: 137 AHSIVDGVASNLFVGSAIVDLY------FKFTRAELARKVFDVMPERDTVLWNTMISGFS 190

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           +N   E S  +F  M   G  FDS TL  +L +  EL+   LG  + C+A       D+ 
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V T L+S+YSK       ++LFD++   D + +N MIS Y  +   + ++ L   ++ SG
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            R +  T +  +       +++  + +    L+ G   Q SV  +L  +YC   ++  AR
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++FD    K++ SW++MI GY  +  +  A+ LF EM +  +  + VT+ +IL AC  +G
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLG 429

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL   K++HG      L S   V+TA+   YAKCG I  A +LFD   +  K+++TWN+M
Sbjct: 430 ALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD--LMVDKNVVTWNAM 487

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ Y  HG   +  KL+ +M QS + P  +TFL +L AC ++GLV EG  IF  M  +YG
Sbjct: 488 ITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYG 547

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
           ++P  EHYA MV++LGRAG +  A E ++ MP +P   VWG LL AC +H  TE+A + +
Sbjct: 548 FQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVAS 607

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           ++L  ++PEN G YVLLSNIY+    +   A +R  ++ R L KTPGC+ IEI    + F
Sbjct: 608 KRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVF 667

Query: 690 WAADQSHPQADAIYTIL 706
            + D+SHPQA AI+ +L
Sbjct: 668 TSGDRSHPQATAIFEML 684


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/569 (35%), Positives = 339/569 (59%), Gaps = 3/569 (0%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  V++ C    D ++ +++H  ++K   +    V + L+  YI+C G  +  + +    
Sbjct: 31  YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIEC-GRLQEARCVFDAL 89

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            K   + WN++I+  V++  +E +  LF+ M  EG + ++GT + +L++   L +L+ G+
Sbjct: 90  VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGK 149

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            VH          D+ V TALL MY K  S+ +A+ +FD + + D + W +MI AY QSG
Sbjct: 150 EVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSG 209

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             KE+  L++ M + GF+ +  T ++ +++ ++   ++W K++H + L  G +  V V  
Sbjct: 210 NGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGT 269

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +L+ MY +   ++ AR +FD +K + VVSW+ MI  +  H +  EA  LF +M+ EG + 
Sbjct: 270 ALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKP 329

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D +  ++IL AC + GALE VK +H +++  GL     V TA+   Y+K G I+ A  +F
Sbjct: 330 DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVF 389

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D  K+  +++++WN+MIS  A+HG      +++ +M    V+PD +TF+ +L+AC +AGL
Sbjct: 390 DRMKV--RNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGL 447

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V+EGR  +  M + YG EP   H   MV+LLGRAG + EA+  + +M   PD   WG LL
Sbjct: 448 VDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALL 507

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            +C+ +   EL EL A++ + ++P+NA  YVLLSNIYA AGKW+ V+ +RT +R+RG++K
Sbjct: 508 GSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRK 567

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            PG SWIE+   +H+F  AD SHP+   I
Sbjct: 568 EPGRSWIEVDNKIHDFLVADSSHPECKEI 596



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 210/389 (53%), Gaps = 4/389 (1%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           DS   + +L+  ++ K L   + VH   + S   ++  V   LL +Y +   L++A+ +F
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D +  K    WN MI+ Y +    ++++ L   M   G + +  T +  + + +++  ++
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           WGK++HA +   G +  V V  +L+ MY +C  +N AR+IFD++    ++SW+ MI  Y 
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 EA RL  +M+ EG + + +T ++IL AC + GAL+ VK +H +++  GL     
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR 266

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V TA+   YAK G I+ A  +FD  K+  +D+++WN MI A+A+HG   + + L+ QM+ 
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKV--RDVVSWNVMIGAFAEHGRGHEAYDLFLQMQT 324

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
              +PD I FL +L AC +AG +E  + I +   +S G E       ++V++  ++G +D
Sbjct: 325 EGCKPDAIMFLSILNACASAGALEWVKKIHRHALDS-GLEVDVRVGTALVHMYSKSGSID 383

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHS 620
           +AR +   M  + +   W  ++S    H 
Sbjct: 384 DARVVFDRMKVR-NVVSWNAMISGLAQHG 411



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 263/548 (47%), Gaps = 49/548 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   II   + QN  + +NL+  Y   G L  ++ VF+++   +   +  ++    +
Sbjct: 48  KQVHD-CIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVE 106

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               E  + ++++M  + + P   TY  ++++C+ L     G+++HA +   G +S   V
Sbjct: 107 HKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRV 166

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G AL+  Y KC  G  NE    +R F +L +     W  +I    Q+G  ++++ L   M
Sbjct: 167 GTALLRMYGKC--GSINEA---RRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQM 221

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
             EG + ++ T +++L +     +L+  + VH  A+ +    D+ V TAL+ MY+K  S+
Sbjct: 222 EQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSI 281

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           +DA+++FD+M  +D V WN+MI A+ + G   E+ +L + M   G + D    ++ +++ 
Sbjct: 282 DDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNAC 341

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           ++   +EW K++H + L +G +  V V  +L+ MY +   ++ AR +FD +K + VVSW+
Sbjct: 342 ASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWN 401

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI G   H    +AL +F  M   GV+ D VT + +L AC + G ++      G S  L
Sbjct: 402 AMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD-----EGRSQYL 456

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            +  +  +                             D+   N M+    + G   +  K
Sbjct: 457 AMTQVYGIEP---------------------------DVSHCNCMVDLLGRAGRLMEA-K 488

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNL 583
           L+      D  PD  T+  LL +C   G VE G ++    KE    +P +   Y  + N+
Sbjct: 489 LFIDNMAVD--PDEATWGALLGSCRTYGNVELGELV---AKERLKLDPKNAATYVLLSNI 543

Query: 584 LGRAGHMD 591
              AG  D
Sbjct: 544 YAEAGKWD 551



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 187/360 (51%), Gaps = 11/360 (3%)

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E++ +LM  ++ G   D F  +  +      K++   KQ+H  ++++  +    V N+L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            +Y EC  L  AR +FD++  K+  SW++MI GYV H  + +A+RLF EM  EGV+ +  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T + IL AC ++ AL+  K +H      GL S   V TA+   Y KCG I  A  +FD  
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD-- 188

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            + + DII+W  MI AYA+ G+  + ++L  QM+Q   +P+ IT++ +L AC + G ++ 
Sbjct: 189 NLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKW 248

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
            + + +   ++ G E       ++V +  ++G +D+AR +   M  + D   W  ++ A 
Sbjct: 249 VKRVHRHALDA-GLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNVMIGAF 306

Query: 617 KMHSETELAELTAEKLISMEPE----NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
             H     A    +  + M+ E    +A  ++ + N  A+AG    V K+     D GL+
Sbjct: 307 AEHGRGHEA---YDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 385/716 (53%), Gaps = 86/716 (12%)

Query: 7   PACS---LQSGHVKFLRFPANQTRPH--MTATHSFSLLNLCENPQHLQQIHARYIILHGL 61
           P+CS   + S    F   P++   P+  +    S SLL+ C+  Q L+ IHA+ +I  GL
Sbjct: 3   PSCSPLTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQ-MIKTGL 61

Query: 62  HQNLILSSNLID---SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
           H      S L++      +   L  +  VF +I  PN L++ T+ +  +   +    L +
Sbjct: 62  HNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKL 121

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           Y  M    + P   T+PF+++SC+    F  G++IH  V+KLG+D         ++ ++ 
Sbjct: 122 YVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYD---------LDLFVH 172

Query: 179 CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
                                   SLIS+ VQNG+ E + ++F                 
Sbjct: 173 -----------------------TSLISVYVQNGRLEDARKVFD---------------- 193

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
                         R  H         +D+   TAL+  Y+    +E A+ LFD++  KD
Sbjct: 194 --------------RSPH---------RDVVSYTALIKGYASRGYIESAQKLFDEIPVKD 230

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN MIS Y ++G  KE+LEL   M+++  R D  T +  VS+ +   +IE G+Q+H+
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHS 290

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            +  +G    + + NSL+D+Y +C +L  A  +F+ +  K V+SW+++I GY   +   E
Sbjct: 291 WIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKE 350

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY---SMKLGLNSLSSVNTA 475
           AL LF EM   G   + VT+++ILPAC ++GA++  +++H Y    +K   N+ SS+ T+
Sbjct: 351 ALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNA-SSLRTS 409

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG IE A ++F+   I  K + +WN+MI  +A HG     F ++++M++  + 
Sbjct: 410 LIDMYAKCGDIEAAHQVFNS--ILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD ITF+GLL+AC  +G+++ GR IF+ M + Y   P  EHY  M++LLG +G   EA E
Sbjct: 468 PDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEE 527

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           ++ +M  +PD  +W  LL ACK+    EL E  A+ LI +EPEN G YVLLSNIYA AG+
Sbjct: 528 MINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGR 587

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           WN VAK+R  L D+G+KK PGCS IEI  +VHEF   D+ HP+   IY +L  +E+
Sbjct: 588 WNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 643


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 358/644 (55%), Gaps = 3/644 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   ++ + S+LI  Y+  G +  ++ +F+ + S + +L+  +L    K G+++    V+
Sbjct: 177 GFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVF 236

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M      P   T+  V+  C+  +    G ++H  VV  G +    V + L+  Y KC
Sbjct: 237 MEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKC 296

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
              F+  +        DL + WN +IS  VQNG  +++  LF  M     + DS T  + 
Sbjct: 297 GHLFDARRLFDMMPKTDLVT-WNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSF 355

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L    E  +L  G+ +HC  + +    D+ + +AL+ +Y K   +E A+ +FD+ +  D 
Sbjct: 356 LPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDI 415

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           VV   MIS Y  +G    +LE+   +++   RA+  T  + + + + +  +  GK++H +
Sbjct: 416 VVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGH 475

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +L+NG      V ++++DMY +C  L+ A + F  +  K  V W+SMI     + +  EA
Sbjct: 476 ILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEA 535

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + LF +M + G + D V+I   L AC N+ AL + K +H + M+    S     +A+   
Sbjct: 536 IDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDM 595

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG +++A  +FD   ++ K+ ++WNS+I+AY  HG       L+  M    ++PD +
Sbjct: 596 YSKCGNLDLACRVFD--TMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHV 653

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL +++AC +AG V+EG   F+ M E  G     EHYA MV+L GRAG ++EA  ++  
Sbjct: 654 TFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINS 713

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPF PDA VWG LL AC++H   ELAE+ +  L  ++P+N+G YVLLSN++A AG+W  V
Sbjct: 714 MPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESV 773

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
            K+R+ +++RG++K PGCSWI++    H F AAD+SHPQ+  IY
Sbjct: 774 LKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIY 817



 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/593 (28%), Positives = 294/593 (49%), Gaps = 9/593 (1%)

Query: 32  ATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           A    S+L  C +P  L   +Q HA+ ++++G+  N IL + L+  Y   G    ++ +F
Sbjct: 46  APQLVSILQTCTDPSGLSQGRQAHAQ-MLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIF 104

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
             +    S  +  +++  +  G+++  LL Y +M      P + T+P+VI++C  L    
Sbjct: 105 YQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA 164

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G  +H ++  +GF+    VG +L++FY + +G   + + +  R        WN +++  
Sbjct: 165 LGRVVHDKIQFMGFELDVFVGSSLIKFYSE-NGCIHDARYLFDRMPSKDGVLWNVMLNGY 223

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           V+NG  + +  +F  MR      +S T   +L        +  G  +H + V S    D 
Sbjct: 224 VKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDS 283

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V   LL+MY+K   L DA+ LFD M   D V WN MIS Y Q+GF  E+  L   M+ +
Sbjct: 284 PVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISA 343

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
             + D  T  + +  +S    +  GK++H  ++RNG    V + ++LID+Y +C D+  A
Sbjct: 344 RMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMA 403

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           RKIFD      +V  ++MI GYV +  +  AL +F  +  E +  + VT+ ++LPAC  +
Sbjct: 404 RKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGL 463

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            AL   K LHG+ +K G      V +AI   YAKCG +++A + F    I  KD + WNS
Sbjct: 464 AALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTF--IGISDKDAVCWNS 521

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI++ +++G   +   L+ QM  +  + D ++    L+AC N   +  G+ I   M    
Sbjct: 522 MITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG- 580

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            +       ++++++  + G++D A  +   M  K +   W  +++A   H  
Sbjct: 581 AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVS-WNSIIAAYGNHGR 632



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 239/489 (48%), Gaps = 5/489 (1%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           ++++C+       G + HAQ++  G      +G  L+  Y+ C G F + K +  +    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC-GAFLDAKNIFYQLRLW 110

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               WN +I      G+ + +   +  M   G   D  T   ++++   L S+ LGR+VH
Sbjct: 111 CSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVH 170

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
                  F  D+ V ++L+  YS+   + DA+ LFD+M  KD V+WN+M++ Y ++G   
Sbjct: 171 DKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWD 230

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
            +  + M M R+    +  T    +S  ++   I +G Q+H  V+ +G +    V N+L+
Sbjct: 231 NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLL 290

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY +C  L  AR++FD +    +V+W+ MI GYV +    EA  LF EM    ++ D +
Sbjct: 291 AMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSI 350

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T  + LP       L   K +H Y ++ G++    + +A+   Y KC  +EMA ++FD+ 
Sbjct: 351 TFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQR 410

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
                DI+   +MIS Y  +G  +   +++  + Q  +R + +T   +L AC     +  
Sbjct: 411 T--PVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTL 468

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+ +   + ++ G+  S    ++++++  + G +D A +    +  K DA  W  ++++C
Sbjct: 469 GKELHGHILKN-GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSC 526

Query: 617 KMHSETELA 625
             + + E A
Sbjct: 527 SQNGKPEEA 535



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 145/304 (47%), Gaps = 6/304 (1%)

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           ++ + + +    +  G+Q HA +L NG  Y   +   L+ MY  C     A+ IF  ++ 
Sbjct: 50  VSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRL 109

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
                W+ MI+G+    Q   AL  + +M   G   D  T   ++ AC  + ++   + +
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVV 169

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H     +G      V +++   Y++ GCI  A  LFD  ++ SKD + WN M++ Y K+G
Sbjct: 170 HDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFD--RMPSKDGVLWNVMLNGYVKNG 227

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           DW     ++ +M++++  P+ +TF  +L+ C +  ++  G  +   +  S G E      
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL-HGLVVSSGLEMDSPVA 286

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS--M 635
            +++ +  + GH+ +AR L   MP K D   W  ++S    +   + A     ++IS  M
Sbjct: 287 NTLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARM 345

Query: 636 EPEN 639
           +P++
Sbjct: 346 KPDS 349



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 39  LNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           L+ C N   L   ++IHA +++      +L   S LID Y+  G L L+ +VF+++   N
Sbjct: 558 LSACANLPALHYGKEIHA-FMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKN 616

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            + + +I+      G  + +L ++  M    + P   T+  +I +C 
Sbjct: 617 EVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACG 663


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/671 (33%), Positives = 380/671 (56%), Gaps = 7/671 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           HL ++  R     GL +++ + S LI  YA+ GLL  +++VF+ +   + +L+  ++   
Sbjct: 164 HLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGY 223

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            K G+    + +++ M      P   T    +  C+   D +SG ++H   VK G +   
Sbjct: 224 VKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEV 283

Query: 167 DVGDALVEFYIKCDGGFENEK--GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            V + LV  Y KC    E  +  G++ R   DL + WN +IS  VQNG  + +  LF  M
Sbjct: 284 AVANTLVSMYAKCQCLEEAWRLFGLMPRD--DLVT-WNGMISGCVQNGLVDDALRLFCDM 340

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           +  G + DS TL +LL +  EL   + G+ +H   V +    D+ + +AL+ +Y K   +
Sbjct: 341 QKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDV 400

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
             A+ +FD     D V+ + MIS Y  +   + ++++   ++  G + +     + + + 
Sbjct: 401 RMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPAC 460

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           ++M  +  G+++H  VL+N  + +  V ++L+DMY +C  L+ +  +F  +  K  V+W+
Sbjct: 461 ASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWN 520

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           SMI  +  + +  EAL LF +M +EGV+ + VTI +IL AC  + A+ + K +HG  +K 
Sbjct: 521 SMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKG 580

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            + +     +A+   Y KCG +E+A  +F  E +  K+ ++WNS+ISAY  HG   +   
Sbjct: 581 PIRADLFAESALIDMYGKCGNLELALRVF--EHMPEKNEVSWNSIISAYGAHGLVKESVD 638

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L   M++   + D +TFL L++AC +AG V+EG  +F+ M E Y  EP  EH + MV+L 
Sbjct: 639 LLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLY 698

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
            RAG +D+A + + DMPFKPDA +WG LL AC++H   ELAE+ +++L  ++P N G YV
Sbjct: 699 SRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYV 758

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           L+SNI A AG+W+GV+KMR  ++D+ ++K PG SW+++    H F AAD++HP ++ IY 
Sbjct: 759 LMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYM 818

Query: 705 ILGILELEIME 715
            L  L +E+ +
Sbjct: 819 SLKSLIIELKQ 829



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 183/657 (27%), Positives = 318/657 (48%), Gaps = 36/657 (5%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQ----NLILSSN 70
           F    ++ T     A    +LL  C  P HL    +IHAR +    L         L + 
Sbjct: 22  FSETASSATNASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTR 81

Query: 71  LIDSYANLGLLSLSQQVFNSIT---SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           L+  Y        +  VF+S+    +  +L +  +++  +  G +   +L Y +M     
Sbjct: 82  LVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPS 141

Query: 128 YPAED--TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGG 182
            P  D  T P+V++SC+ L     G  +H     LG D    VG AL++ Y      DG 
Sbjct: 142 SPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGA 201

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            E   GM +R        WN ++   V+ G    +  LF++MR  G + +  TL   L  
Sbjct: 202 REVFDGMDERDC----VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSV 257

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
                 L  G  +H +AV      +++V   L+SMY+K   LE+A  LF  M   D V W
Sbjct: 258 CAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTW 317

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N MIS   Q+G   ++L L   M +SG + D  T  + + +++ +   + GK++H  ++R
Sbjct: 318 NGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVR 377

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           N +   V + ++L+D+Y +C D+  A+ +FD+ K+  VV  S+MI GYV +  S  A+++
Sbjct: 378 NCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKM 437

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F  +   G++ + V + + LPAC ++ A+   + LHGY +K        V +A+   Y+K
Sbjct: 438 FRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSK 497

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG ++++  +F   K+ +KD +TWNSMIS++A++G+  +   L+ QM    V+ + +T  
Sbjct: 498 CGRLDLSHYMF--SKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTIS 555

Query: 543 GLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
            +L+AC     +  G+    II K    +  +  S     +++++ G+ G+++ A  + +
Sbjct: 556 SILSACAGLPAIYYGKEIHGIIIKGPIRADLFAES-----ALIDMYGKCGNLELALRVFE 610

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAA 653
            MP K +   W  ++SA   H    L + + + L  M+ E   A +   L+ I A A
Sbjct: 611 HMPEKNEVS-WNSIISAYGAHG---LVKESVDLLCCMQEEGFKADHVTFLALISACA 663



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/534 (24%), Positives = 246/534 (46%), Gaps = 28/534 (5%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           ++R C        G +IHA+ V  G    D  G        +  G +     ++ R+F+D
Sbjct: 42  LLRGCVAPSHLPLGLRIHARAVTSGL--LDAAGPGPAALQTRLVGMY-----VLARRFRD 94

Query: 197 LKS--------------RWNSLISLAVQNGKSEKSFELFKLM--RMEGAEFDSGTLINLL 240
             +               WN LI      G    +   +  M         D  TL  ++
Sbjct: 95  AVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVV 154

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           +S   L +L LGR+VH         +D+ V +AL+ MY+    L+ A+ +FD M ++D V
Sbjct: 155 KSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCV 214

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
           +WN+M+  Y ++G    ++ L   M  SG   +  T    +S  +   ++  G Q+H   
Sbjct: 215 LWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLA 274

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           ++ G + +V+V N+L+ MY +C+ L  A ++F  +    +V+W+ MI G V +    +AL
Sbjct: 275 VKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDAL 334

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           RLF +M+  G++ D VT+ ++LPA   +   +  K +HGY ++   +    + +A+   Y
Sbjct: 335 RLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIY 394

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            KC  + MA  +FD  K  S D++  ++MIS Y  +       K++  +    ++P+ + 
Sbjct: 395 FKCRDVRMAQNVFDATK--SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVM 452

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
               L AC +   +  G+ +   + ++  YE      ++++++  + G +D +  +   M
Sbjct: 453 VASTLPACASMAAMRIGQELHGYVLKN-AYEGRCYVESALMDMYSKCGRLDLSHYMFSKM 511

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
             K D   W  ++S+   + E E A     ++I ME     N  + S + A AG
Sbjct: 512 SAK-DEVTWNSMISSFAQNGEPEEALDLFRQMI-MEGVKYNNVTISSILSACAG 563


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/641 (34%), Positives = 363/641 (56%), Gaps = 5/641 (0%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           L S L+  Y   G ++ +++VF++++S  ++ ++  I+   +K GE+E++L ++ QM   
Sbjct: 352 LGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHEL 411

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            + P E     +++  +CL     G   H  +VKLGF +   V +AL+ FY K +    +
Sbjct: 412 GIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNM-IGD 470

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
              +  R  +     WNS+IS    NG + ++ ELF  M  +G E DS TL+++L +  +
Sbjct: 471 AVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
            +    GR+VH  +V +    + S+  ALL MYS  +  +    +F  M  K+ V W  M
Sbjct: 531 SRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAM 590

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I++Y ++G   +   LL  MV  G R D+F   +A+ + +  ++++ GK +H   +RNG 
Sbjct: 591 ITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGM 650

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           +  + V N+L++MY +C ++  AR IFD V  K V+SW+++I GY  ++   E+  LFS+
Sbjct: 651 EKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSD 710

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M L+    + VT+  ILPA  +I +LE  + +H Y+++ G    S  + A+   Y KCG 
Sbjct: 711 MLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGA 769

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           + +A  LFD  ++  K++I+W  MI+ Y  HG       L+ QM+ S + PD  +F  +L
Sbjct: 770 LLVARVLFD--RLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAIL 827

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
            AC ++GL  EGR  FK M++ Y  EP  +HY  +V+LL R G + EA E ++ MP +PD
Sbjct: 828 YACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPD 887

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           + +W  LL  C++H   +LAE  A+K+  +EPEN G YVLL+NIYA A +W  V K++  
Sbjct: 888 SSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNK 947

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +  RGL++  G SWIE+   VH F A +++HP  + I   L
Sbjct: 948 IGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFL 988



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 159/602 (26%), Positives = 286/602 (47%), Gaps = 35/602 (5%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL Q   +++ LI  Y+  G +  + +VF+S+   +++ + +++      G +   + ++
Sbjct: 234 GLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLF 293

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK----LGFDS----FDD--VG 169
            +M  Q    +  T   V+ +C+ L   + G+ +H   VK     G DS     DD  +G
Sbjct: 294 SKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALG 353

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLM 224
             LV  Y+KC      +    +R F  + S+     WN ++    + G+ E+S  LF  M
Sbjct: 354 SKLVFMYVKC-----GDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM 408

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
              G   D   +  LL+    L     G + H   V   F    +V  AL+S Y+K   +
Sbjct: 409 HELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMI 468

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
            DA ++F++M  +D + WN +IS    +G   E++EL + M   G   D  T ++ + + 
Sbjct: 469 GDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPAC 528

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           +  +    G+ +H   ++ G   + S+ N+L+DMY  C D     +IF S+  K VVSW+
Sbjct: 529 AQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWT 588

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI  Y+      +   L  EM L+G+  D   + + L A     +L+  K +HGY+++ 
Sbjct: 589 AMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRN 648

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G+  L  V  A+   Y KC  +E A  +FD  ++ +KD+I+WN++I  Y+++   ++ F 
Sbjct: 649 GMEKLLPVANALMEMYVKCRNVEEARLIFD--RVTNKDVISWNTLIGGYSRNNFPNESFS 706

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYAS--M 580
           L++ M     RP+ +T   +L A  +   +E GR I      +Y       ++ YAS  +
Sbjct: 707 LFSDMLL-QFRPNAVTMTCILPAAASISSLERGREI-----HAYALRRGFLEDSYASNAL 760

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL--ISMEPE 638
           V++  + G +  AR L  D   K +   W  +++   MH   + A    E++    +EP+
Sbjct: 761 VDMYVKCGALLVARVLF-DRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPD 819

Query: 639 NA 640
            A
Sbjct: 820 AA 821



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 153/616 (24%), Positives = 287/616 (46%), Gaps = 31/616 (5%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +L   L+ +Y   G L  ++ VF+ +   + +  ++ +++   +K G++++ + +++QM 
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQ 196

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P       V++  S L     GE IH  + KLG      V +AL+  Y +C G  
Sbjct: 197 CCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRC-GRM 255

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           E+      R F  +  R    WNS+I     NG    + +LF  M  +G E  S T++++
Sbjct: 256 EDA----ARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSV 311

Query: 240 LRSTVELKSLELGRIVHCVAVVSDF----------CKDLSVNTALLSMYSKLASLEDAKM 289
           L +   L    +G+ VH  +V S              D ++ + L+ MY K   +  A+ 
Sbjct: 312 LPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARR 371

Query: 290 LFDKMSDKDRV-VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +FD MS K  V VWN+++  Y + G  +ESL L + M   G   D       +  I+ + 
Sbjct: 372 VFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLS 431

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
               G   H  +++ G   Q +V N+LI  Y +   +  A  +F+ +  +  +SW+S+I 
Sbjct: 432 CARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVIS 491

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G  ++  + EA+ LF  M  +G E+D VT++++LPAC         + +HGYS+K GL  
Sbjct: 492 GCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIG 551

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            +S+  A+   Y+ C   +   ++F    +  K++++W +MI++Y + G + +   L  +
Sbjct: 552 ETSLANALLDMYSNCSDWQSTNQIF--RSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQE 609

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    +RPD+      L A      +++G+ +      + G E       +++ +  +  
Sbjct: 610 MVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRN-GMEKLLPVANALMEMYVKCR 668

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           +++EAR L+ D     D   W  L+    + +   E   L ++ L+   P    N V ++
Sbjct: 669 NVEEAR-LIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRP----NAVTMT 723

Query: 648 NIYAAAGKWNGVAKMR 663
            I  AA   + + + R
Sbjct: 724 CILPAAASISSLERGR 739



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 197/395 (49%), Gaps = 2/395 (0%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           YI+  G      + + LI  YA   ++  +  VFN +   +++ + +++   S  G   +
Sbjct: 442 YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSE 501

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + ++ +M  Q       T   V+ +C+    + +G  +H   VK G      + +AL++
Sbjct: 502 AIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLD 561

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y  C       +       K++ S W ++I+  ++ G  +K   L + M ++G   D  
Sbjct: 562 MYSNCSDWQSTNQIFRSMGQKNVVS-WTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVF 620

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            + + L +    +SL+ G+ VH   + +   K L V  AL+ MY K  ++E+A+++FD++
Sbjct: 621 AVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRV 680

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           ++KD + WN +I  Y ++ FP ES  L   M+   FR +  T    + + +++ ++E G+
Sbjct: 681 TNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGR 739

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++HA  LR G        N+L+DMY +C  L  AR +FD +  K ++SW+ MI GY  H 
Sbjct: 740 EIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 799

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
               A+ LF +M+  G+E D  +   IL AC + G
Sbjct: 800 FGKHAIALFEQMRGSGIEPDAASFSAILYACCHSG 834



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 204/430 (47%), Gaps = 43/430 (10%)

Query: 245 ELKSLELGRIVHCVAVVSDFC----KDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--D 298
           E +SLE  +  H +   S       K   +   L+  Y K   L +A+ +FD M  +  D
Sbjct: 109 EERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAAD 168

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
             VW  ++SAY ++G  +E++ L   M   G   D       +  +S++ ++  G+ +H 
Sbjct: 169 VRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHG 228

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            + + G     +V N+LI +Y  C  +  A ++FDS+  +  +SW+SMI G  ++     
Sbjct: 229 LLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGT 288

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAI- 476
           A+ LFS+M  +G E+  VT++++LPAC  +G     K +HGYS+K G L  L SV + I 
Sbjct: 289 AVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGID 348

Query: 477 --------FISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYT 527
                      Y KCG +  A  +FD   + SK ++  WN ++  YAK G++ +   L+ 
Sbjct: 349 DAALGSKLVFMYVKCGDMASARRVFD--AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFV 406

Query: 528 QMKQSDVRPD---LITFLGLLT--ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           QM +  + PD   +   L  +T  +C   GLV  G I+        G+        ++++
Sbjct: 407 QMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV------KLGFGAQCAVCNALIS 460

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK---MHSE---------TELAELTAE 630
              ++  + +A  +   MP + D   W  ++S C    ++SE         T+  EL + 
Sbjct: 461 FYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSV 519

Query: 631 KLISMEPENA 640
            L+S+ P  A
Sbjct: 520 TLLSVLPACA 529


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 376/659 (57%), Gaps = 9/659 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  ++ + S LI  YAN GLL  ++QVF+ +   + +L+  ++    K G     + ++
Sbjct: 176 GLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELF 235

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M      P   T    +   +   D   G ++H   VK G +S   V + LV  Y KC
Sbjct: 236 GDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKC 295

Query: 180 ---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
              D G++   G++ R   DL + WN +IS  VQNG  +++  LF  M+  G   DS TL
Sbjct: 296 KCLDDGWK-LFGLMPRD--DLVT-WNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           ++LL +  +L     G+ +H   V +    D+ + +AL+ +Y K  ++  A+ ++D    
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
            D V+ + MIS Y  +G  +E++++   ++  G R +     + + + ++M  ++ G+++
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H+  L+N  + +  V ++L+DMY +C  L+ +  IF  +  K  V+W+SMI  +  + + 
Sbjct: 472 HSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEP 531

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            EAL LF EM +EGV+   VTI ++L AC ++ A+ + K +HG  +K  + +     +A+
Sbjct: 532 EEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESAL 591

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y KCG +E A  +F  E +  K+ ++WNS+I++Y  +G   +   L   M++   + 
Sbjct: 592 IDMYGKCGNLEWAHRVF--ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKA 649

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D +TFL L++AC +AG V+EG  +F+ M E Y   P  EH+A MV+L  RAG +D+A EL
Sbjct: 650 DHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMEL 709

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           + DMPFKPDA +WG LL AC++H   ELAE+ +++L  ++P N+G YVL+SNI A AG+W
Sbjct: 710 IVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRW 769

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +GV+K+R  ++D  ++K PG SW+++    H F AAD+SHP ++ IY  L  + LE+ E
Sbjct: 770 DGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELRE 828



 Score =  258 bits (660), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 299/585 (51%), Gaps = 30/585 (5%)

Query: 36  FSLLNLCENPQHLQ---QIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSI 91
            ++L  C +P HL    Q+H R +   GLH  +  L + L+  Y        +  VF+S+
Sbjct: 43  LAVLRGCVSPSHLSLGLQVHGRAVTA-GLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 92  ---TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRSCSCLLD 146
               +  +L +  +++ L+  G+Y   LL Y +M      P  D  T+P+V++SC+ L  
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WN 202
              G  +H     LG D    VG AL++ Y   +GG   +    ++ F  +  R    WN
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMY--ANGGLLWDA---RQVFDGMAERDCVLWN 216

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
            ++   V+ G    + ELF  MR  G E +  TL   L  +     L  G  +H +AV  
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               +++V   L+SMY+K   L+D   LF  M   D V WN MIS   Q+GF  ++L L 
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M +SG R D  T ++ + +++ +     GK++H  ++RN     V + ++L+D+Y +C
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC 396

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +  A+ ++DS K   VV  S+MI GYV +  S EA+++F  +  +G+  + V I ++L
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           PAC ++ A++  + LH Y++K        V +A+   YAKCG ++++  +F   KI +KD
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF--SKISAKD 514

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR---- 558
            +TWNSMIS++A++G+  +   L+ +M    V+   +T   +L+AC +   +  G+    
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           ++ K    +  +  S     +++++ G+ G+++ A  + + MP K
Sbjct: 575 VVIKGPIRADLFAES-----ALIDMYGKCGNLEWAHRVFESMPEK 614



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 255/534 (47%), Gaps = 34/534 (6%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFK 195
           V+R C        G ++H + V  G  + D  +   LV  Y+            + R+F+
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYV------------LARRFR 92

Query: 196 DLKS--------------RWNSLISLAVQNGKSEKSFELF-KLMRMEGAEF-DSGTLINL 239
           D  +               WN LI      G    +   + K+     A   DS T   +
Sbjct: 93  DAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYV 152

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           ++S   L ++ LGR+VH  A       D+ V +AL+ MY+    L DA+ +FD M+++D 
Sbjct: 153 VKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDC 212

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V+WN+M+  Y ++G    ++EL   M  SG   +  T    +S  +T  ++ +G Q+H  
Sbjct: 213 VLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTL 272

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            ++ G + +V+V N+L+ MY +C+ L+   K+F  +    +V+W+ MI G V +    +A
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQA 332

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF +M+  G+  D VT++++LPA  ++      K LHGY ++  ++    + +A+   
Sbjct: 333 LLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDI 392

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KC  + MA  ++D  K  + D++  ++MIS Y  +G   +  K++  + +  +RP+ +
Sbjct: 393 YFKCRAVRMAQSVYDSSK--AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAV 450

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
               +L AC +   ++ G+ +     ++  YE      ++++++  + G +D +  +   
Sbjct: 451 AIASVLPACASMAAMKLGQELHSYALKN-AYEGRCYVESALMDMYAKCGRLDLSHYIFSK 509

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
           +  K D   W  ++S+   + E E A L   + + ME     N  + S + A A
Sbjct: 510 ISAK-DEVTWNSMISSFAQNGEPEEA-LNLFREMCMEGVKYSNVTISSVLSACA 561



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 187/370 (50%), Gaps = 10/370 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  YI+ + +H ++ L S L+D Y     + ++Q V++S  + + ++  T++     
Sbjct: 368 KELHG-YIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ + +++ +  Q + P       V+ +C+ +     G+++H+  +K  ++    V
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL++ Y KC G  +    +  +     +  WNS+IS   QNG+ E++  LF+ M MEG
Sbjct: 487 ESALMDMYAKC-GRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEG 545

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            ++ + T+ ++L +   L ++  G+ +H V +      DL   +AL+ MY K  +LE A 
Sbjct: 546 VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAH 605

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+ M +K+ V WN +I++Y   G  KES+ LL  M   GF+AD  T +A VS+ +   
Sbjct: 606 RVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAG 665

Query: 349 NIEWGKQMHANVLRNGSDYQVSVH----NSLIDMYCECEDLNCARKIFDSVKTKTVVS-W 403
            ++ G ++   +     +YQ++        ++D+Y     L+ A ++   +  K     W
Sbjct: 666 QVQEGLRLFRCMTE---EYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIW 722

Query: 404 SSMIKGYVTH 413
            +++     H
Sbjct: 723 GALLHACRVH 732



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 145/301 (48%), Gaps = 14/301 (4%)

Query: 16  VKFLRFPANQ-TRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNL 71
           VK  R+   Q  RP+  A  S  +L  C +   +   Q++H+ Y + +       + S L
Sbjct: 434 VKMFRYLLEQGIRPNAVAIAS--VLPACASMAAMKLGQELHS-YALKNAYEGRCYVESAL 490

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           +D YA  G L LS  +F+ I++ + + + +++ + ++ GE E+ L ++++M ++ +  + 
Sbjct: 491 MDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSN 550

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
            T   V+ +C+ L     G++IH  V+K  +  D F +   AL++ Y KC G  E    +
Sbjct: 551 VTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAE--SALIDMYGKC-GNLEWAHRV 607

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
            +   +  +  WNS+I+     G  ++S  L + M+ EG + D  T + L+ +      +
Sbjct: 608 FESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQV 667

Query: 250 ELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA-KMLFDKMSDKDRVVWNIMIS 307
           + G R+  C+         +     ++ +YS+   L+ A +++ D     D  +W  ++ 
Sbjct: 668 QEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLH 727

Query: 308 A 308
           A
Sbjct: 728 A 728


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/691 (33%), Positives = 379/691 (54%), Gaps = 11/691 (1%)

Query: 30   MTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
            +  T   S+LN C   + L+    IH+ +I   G   ++ + + LI  YA  G L  +++
Sbjct: 328  LNRTTYLSILNACSTSKALEAGKLIHS-HISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 87   VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
            +F ++   + + +  I+   ++  +  + + +YKQM  + + P   T+  ++ +C+    
Sbjct: 387  LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 147  FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
            +  G+ IH  +++ G  S   + +AL+  Y +C    E +      + +D+ S WNS+I+
Sbjct: 447  YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIA 505

Query: 207  LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               Q+G  E +++LF+ M+ E  E D+ T  ++L      ++LELG+ +H     S    
Sbjct: 506  GHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL 565

Query: 267  DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
            D+++  AL++MY +  SL+DA+ +F  +  +D + W  MI      G   +++EL   M 
Sbjct: 566  DVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ 625

Query: 327  RSGFRA--DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
              GFR     F++I  V + S    ++ GK++ A +L +G +    V N+LI  Y +   
Sbjct: 626  NEGFRPVKSTFSSILKVCTSSAC--LDEGKKVIAYILNSGYELDTGVGNALISAYSKSGS 683

Query: 385  LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            +  AR++FD + ++ +VSW+ +I GY  +     A+    +M+ + V  +  + +++L A
Sbjct: 684  MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNA 743

Query: 445  CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
            C +  ALE  K +H   +K  L     V  A+   YAKCG    A E+FD   I  K+++
Sbjct: 744  CSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFD--NIIEKNVV 801

Query: 505  TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            TWN+MI+AYA+HG  S+    +  M++  ++PD  TF  +L+AC +AGLV EG  IF  M
Sbjct: 802  TWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSM 861

Query: 565  KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            +  YG  P+ EHY  +V LLGRA    EA  L+  MPF PDA VW  LL AC++H    L
Sbjct: 862  ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIAL 921

Query: 625  AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            AE  A   + +   N   Y+LLSN+YAAAG+W+ VAK+R  +  RG++K PG SWIE+  
Sbjct: 922  AEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 981

Query: 685  LVHEFWAADQSHPQADAIYTILGILELEIME 715
            ++HEF AAD+SHP+   IY  L  L +E+ E
Sbjct: 982  IIHEFIAADRSHPETAEIYAELKRLSVEMEE 1012



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/602 (27%), Positives = 312/602 (51%), Gaps = 10/602 (1%)

Query: 24  NQTRPHMTATHSF-SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLG 79
           +Q RP  T   ++ +LL  C   + L   ++IHA+ ++   +  ++ LS+ LI+ Y    
Sbjct: 18  HQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQ-MVEAWVGPDIFLSNLLINMYVKCR 76

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            +  + QVF  +   + + + +++   ++ G  +K   ++++M      P + TY  ++ 
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT 136

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C    +  +G+KIH+Q++K G+     V ++L+  Y KC       +       +D+ S
Sbjct: 137 ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            +N+++ L  Q    ++   LF  M  EG   D  T INLL +      L+ G+ +H + 
Sbjct: 197 -YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V      D+ V TAL++M  +   ++ AK  F   +D+D VV+N +I+A  Q G   E+ 
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAF 315

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           E    M   G   +  T ++ +++ ST K +E GK +H+++  +G    V + N+LI MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
             C DL  AR++F ++  + ++SW+++I GY   +   EA+RL+ +M+ EGV+   VT +
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC N  A    K +H   ++ G+ S   +  A+   Y +CG +  A  +F  E   
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF--EGTQ 493

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           ++D+I+WNSMI+ +A+HG +   +KL+ +M+  ++ PD ITF  +L+ C N   +E G+ 
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           I   + ES G +       +++N+  R G + +AR +   +  + D   W  ++  C   
Sbjct: 554 IHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQ 611

Query: 620 SE 621
            E
Sbjct: 612 GE 613


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 376/659 (57%), Gaps = 9/659 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  ++ + S LI  YAN GLL  ++QVF+ +   + +L+  ++    K G     + ++
Sbjct: 176 GLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELF 235

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M      P   T    +   +   D   G ++H   VK G +S   V + LV  Y KC
Sbjct: 236 GDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKC 295

Query: 180 ---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
              D G++   G++ R   DL + WN +IS  VQNG  +++  LF  M+  G   DS TL
Sbjct: 296 KCLDDGWK-LFGLMPRD--DLVT-WNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           ++LL +  +L     G+ +H   V +    D+ + +AL+ +Y K  ++  A+ ++D    
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
            D V+ + MIS Y  +G  +E++++   ++  G R +     + + + ++M  ++ G+++
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H+  L+N  + +  V ++L+DMY +C  L+ +  IF  +  K  V+W+SMI  +  + + 
Sbjct: 472 HSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEP 531

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            EAL LF EM +EGV+   VTI ++L AC ++ A+ + K +HG  +K  + +     +A+
Sbjct: 532 EEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESAL 591

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y KCG +E A  +F  E +  K+ ++WNS+I++Y  +G   +   L   M++   + 
Sbjct: 592 IDMYGKCGNLEWAHRVF--ESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKA 649

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D +TFL L++AC +AG V+EG  +F+ M E Y   P  EH+A MV+L  RAG +D+A EL
Sbjct: 650 DHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMEL 709

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           + DMPFKPDA +WG LL AC++H   ELAE+ +++L  ++P N+G YVL+SNI A AG+W
Sbjct: 710 IVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRW 769

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +GV+K+R  ++D  ++K PG SW+++    H F AAD+SHP ++ IY  L  + LE+ E
Sbjct: 770 DGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELRE 828



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 299/585 (51%), Gaps = 30/585 (5%)

Query: 36  FSLLNLCENPQHLQ---QIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSI 91
            ++L  C +P HL    Q+H R +   GLH  +  L + L+  Y        +  VF+S+
Sbjct: 43  LAVLRGCVSPSHLSLGLQVHGRAVTA-GLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 92  ---TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRSCSCLLD 146
               +  +L +  +++ L+  G+Y   LL Y +M      P  D  T+P+V++SC+ L  
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WN 202
              G  +H     LG D    VG AL++ Y   +GG   +    ++ F  +  R    WN
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMY--ANGGLLWDA---RQVFDGMAERDCVLWN 216

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
            ++   V+ G    + ELF  MR  G E +  TL   L  +     L  G  +H +AV  
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               +++V   L+SMY+K   L+D   LF  M   D V WN MIS   Q+GF  ++L L 
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M +SG R D  T ++ + +++ +     GK++H  ++RN     V + ++L+D+Y +C
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC 396

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +  A+ ++DS K   VV  S+MI GYV +  S EA+++F  +  +G+  + V I ++L
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           PAC ++ A++  + LH Y++K        V +A+   YAKCG ++++  +F   KI +KD
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF--SKISAKD 514

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR---- 558
            +TWNSMIS++A++G+  +   L+ +M    V+   +T   +L+AC +   +  G+    
Sbjct: 515 EVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHG 574

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           ++ K    +  +  S     +++++ G+ G+++ A  + + MP K
Sbjct: 575 VVIKGPIRADLFAES-----ALIDMYGKCGNLEWAHRVFESMPEK 614



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 255/534 (47%), Gaps = 34/534 (6%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFK 195
           V+R C        G ++H + V  G  + D  +   LV  Y+            + R+F+
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYV------------LARRFR 92

Query: 196 DLKS--------------RWNSLISLAVQNGKSEKSFELF-KLMRMEGAEF-DSGTLINL 239
           D  +               WN LI      G    +   + K+     A   DS T   +
Sbjct: 93  DAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYV 152

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           ++S   L ++ LGR+VH  A       D+ V +AL+ MY+    L DA+ +FD M+++D 
Sbjct: 153 VKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDC 212

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V+WN+M+  Y ++G    ++EL   M  SG   +  T    +S  +T  ++ +G Q+H  
Sbjct: 213 VLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTL 272

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            ++ G + +V+V N+L+ MY +C+ L+   K+F  +    +V+W+ MI G V +    +A
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQA 332

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF +M+  G+  D VT++++LPA  ++      K LHGY ++  ++    + +A+   
Sbjct: 333 LLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDI 392

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KC  + MA  ++D  K  + D++  ++MIS Y  +G   +  K++  + +  +RP+ +
Sbjct: 393 YFKCRAVRMAQSVYDSSK--AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAV 450

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
               +L AC +   ++ G+ +     ++  YE      ++++++  + G +D +  +   
Sbjct: 451 AIASVLPACASMAAMKLGQELHSYALKN-AYEGRCYVESALMDMYAKCGRLDLSHYIFSK 509

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
           +  K D   W  ++S+   + E E A L   + + ME     N  + S + A A
Sbjct: 510 ISAK-DEVTWNSMISSFAQNGEPEEA-LNLFREMCMEGVKYSNVTISSVLSACA 561



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 187/370 (50%), Gaps = 10/370 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  YI+ + +H ++ L S L+D Y     + ++Q V++S  + + ++  T++     
Sbjct: 368 KELHG-YIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ + +++ +  Q + P       V+ +C+ +     G+++H+  +K  ++    V
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYV 486

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL++ Y KC G  +    +  +     +  WNS+IS   QNG+ E++  LF+ M MEG
Sbjct: 487 ESALMDMYAKC-GRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEG 545

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            ++ + T+ ++L +   L ++  G+ +H V +      DL   +AL+ MY K  +LE A 
Sbjct: 546 VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAH 605

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+ M +K+ V WN +I++Y   G  KES+ LL  M   GF+AD  T +A VS+ +   
Sbjct: 606 RVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAG 665

Query: 349 NIEWGKQMHANVLRNGSDYQVSVH----NSLIDMYCECEDLNCARKIFDSVKTKTVVS-W 403
            ++ G ++   +     +YQ++        ++D+Y     L+ A ++   +  K     W
Sbjct: 666 QVQEGLRLFRCMTE---EYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIW 722

Query: 404 SSMIKGYVTH 413
            +++     H
Sbjct: 723 GALLHACRVH 732



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 144/301 (47%), Gaps = 14/301 (4%)

Query: 16  VKFLRFPANQ-TRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNL 71
           VK  R+   Q  RP+  A  S  +L  C +   +   Q++H+ Y + +       + S L
Sbjct: 434 VKMFRYLLEQGIRPNAVAIAS--VLPACASMAAMKLGQELHS-YALKNAYEGRCYVESAL 490

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           +D YA  G L LS  +F+ I++ + + + +++ + ++ GE E+ L ++++M ++ +  + 
Sbjct: 491 MDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSN 550

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
            T   V+ +C+ L     G++IH  V+K  +  D F +   AL++ Y KC G  E    +
Sbjct: 551 VTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAE--SALIDMYGKC-GNLEWAHRV 607

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
            +   +  +  WNS+I+     G  ++S  L + M+ EG + D  T + L+ +      +
Sbjct: 608 FESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQV 667

Query: 250 ELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMIS 307
           + G R+  C+         +     ++ +YS+   L+ A  L   M  K D  +W  ++ 
Sbjct: 668 QEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLH 727

Query: 308 A 308
           A
Sbjct: 728 A 728


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/655 (33%), Positives = 366/655 (55%), Gaps = 3/655 (0%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +II  G   N+   + LI  Y+  G ++ ++Q+F+S+ +   + +  ++   ++ G  ++
Sbjct: 82  HIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKE 141

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
              +++QM  + + P+  T+  V+ +CS       G+++HAQVV  GF S   +G ALV 
Sbjct: 142 AFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVS 201

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+K  G  ++ + +         S +N ++    ++G  EK+FELF  M+  G + +  
Sbjct: 202 MYVK-GGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKI 260

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           + +++L      ++L  G+ VH   + +    D+ V T+L+ MY+   S+E A+ +FD M
Sbjct: 261 SFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNM 320

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
             +D V W +MI  Y ++G  +++  L   M   G + D  T +  +++ +   N+   +
Sbjct: 321 KVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR 380

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++H+ V   G    + V  +L+ MY +C  +  AR++FD++  + VVSWS+MI  YV + 
Sbjct: 381 EIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENG 440

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              EA   F  MK   +E D VT IN+L AC ++GAL+    ++  ++K  L S   +  
Sbjct: 441 YGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGN 500

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+ I  AK G +E A  +FD   +  +D+ITWN+MI  Y+ HG+  +   L+ +M +   
Sbjct: 501 ALIIMNAKHGSVERARYIFD--TMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERF 558

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           RP+ +TF+G+L+AC  AG V+EGR  F  + E  G  P+ + Y  MV+LLGRAG +DEA 
Sbjct: 559 RPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAE 618

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
            L+K MP KP + +W  LL AC++H   ++AE  AE+ + ++P +   YV LS++YAAAG
Sbjct: 619 LLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAG 678

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            W  VAK+R  +  RG++K  GC+WIE+   VH F   D+SHP    IY  L  L
Sbjct: 679 MWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARL 733



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 214/428 (50%), Gaps = 15/428 (3%)

Query: 197 LKSRWNSLISLAVQNGKSEKSF-------ELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           ++ RW   + L V + +   +F       ++ + +   G   DS T + L +   EL+  
Sbjct: 14  VRRRWFGSLQLPVPSARFRSTFTRRVGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDA 73

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            LG+ V    +      ++     L+ +YS   ++ +A+ +FD + +K  V WN +I+ Y
Sbjct: 74  ALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGY 133

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDY 367
            Q G  KE+  L   MV  G    + T ++ + + S+   + WGK++HA V+  G  SD+
Sbjct: 134 AQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDF 193

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           ++    +L+ MY +   ++ AR++FD +  + V +++ M+ GY       +A  LF  M+
Sbjct: 194 RIG--TALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQ 251

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
             G++ + ++ ++IL  C    AL   K +H   M  GL     V T++   Y  CG IE
Sbjct: 252 QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIE 311

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  +FD  K+  +D+++W  MI  YA++G+    F L+  M++  ++PD IT++ ++ A
Sbjct: 312 GARRVFDNMKV--RDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA 369

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C  +  +   R I  ++ +  G+        ++V++  + G + +AR++   MP + D  
Sbjct: 370 CAISANLNHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVV 427

Query: 608 VWGPLLSA 615
            W  ++ A
Sbjct: 428 SWSAMIGA 435


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/685 (31%), Positives = 382/685 (55%), Gaps = 4/685 (0%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
            T   +    ++C + +  +Q+HA  I + G   +L + S L+D YA  G + L+++VF 
Sbjct: 230 FTYATALKACSMCLDLEFGKQVHAEAIKV-GDFSDLFVGSALVDLYAKCGEMVLAERVFL 288

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
            +   N++ +  +L   ++ G+ EK L ++ +M    +  ++ T   V++ C+   +  +
Sbjct: 289 CMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRA 348

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G+ +H+  +++G +  + +   LV+ Y KC    +  K  ++ +  D+ S W+++I+   
Sbjct: 349 GQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVS-WSAIITCLD 407

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           Q G+S ++ E+FK MR  G   +  TL +L+ +  +L  L  G  +H       F  D +
Sbjct: 408 QKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNT 467

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V  AL++MY K+ S++D   +F+  +++D + WN ++S ++ +      L +   M+  G
Sbjct: 468 VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEG 527

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           F  +++T I+ + S S++ +++ GKQ+HA +++N  D    V  +L+DMY +   L  A 
Sbjct: 528 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 587

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            IF+ +  + + +W+ ++ GY    Q  +A++ F +M+ EGV+ +  T+ + L  C  I 
Sbjct: 588 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 647

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L+  + LH  ++K G +    V +A+   YAKCGC+E A  +FD   + S+D ++WN++
Sbjct: 648 TLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFD--GLVSRDTVSWNTI 705

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  Y++HG   +  K +  M      PD +TF+G+L+AC + GL+EEG+  F  + + YG
Sbjct: 706 ICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG 765

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P+ EHYA MV++LGRAG   E    +++M    +  +W  +L ACKMH   E  E  A
Sbjct: 766 ITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAA 825

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
            KL  +EPE   NY+LLSN++AA G W+ V  +R  +  RG+KK PGCSW+E+   VH F
Sbjct: 826 MKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVF 885

Query: 690 WAADQSHPQADAIYTILGILELEIM 714
            + D SHP+   I+  L  L  ++M
Sbjct: 886 LSHDGSHPKIREIHLKLQDLHQKLM 910



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 156/595 (26%), Positives = 296/595 (49%), Gaps = 25/595 (4%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L  C +   L +   IH + +I  G++ +  L ++L++ YA  G  + + +VF  I   
Sbjct: 134 MLRTCASKGDLNEGKAIHGQ-VIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPER 192

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++      G     + ++ +M  + +   E TY   +++CS  LD   G+++H
Sbjct: 193 DVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVH 252

Query: 155 AQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKF----KDLKSRWNSLISLA 208
           A+ +K+G   F D  VG ALV+ Y KC      E  + +R F    K     WN+L++  
Sbjct: 253 AEAIKVG--DFSDLFVGSALVDLYAKC-----GEMVLAERVFLCMPKQNAVSWNALLNGF 305

Query: 209 VQNGKSEKSFELFKLMRMEGAE--FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            Q G +EK   LF   RM G+E  F   TL  +L+      +L  G+IVH +A+      
Sbjct: 306 AQMGDAEKVLNLF--CRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCEL 363

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D  ++  L+ MYSK     DA  +F ++ D D V W+ +I+   Q G  +E+ E+   M 
Sbjct: 364 DEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMR 423

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            SG   + FT  + VS+ + + ++ +G+ +HA V + G +Y  +V N+L+ MY +   + 
Sbjct: 424 HSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQ 483

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
              ++F++   + ++SW++++ G+  ++     LR+F++M  EG   +  T I+IL +C 
Sbjct: 484 DGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS 543

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++  ++  K +H   +K  L+    V TA+   YAK   +E A  +F+  ++  +D+  W
Sbjct: 544 SLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN--RLIKRDLFAW 601

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
             +++ YA+ G   +  K + QM++  V+P+  T    L+ C     ++ GR +   M  
Sbjct: 602 TVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAI 660

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             G        +++V++  + G +++A E+V D     D   W  ++     H +
Sbjct: 661 KAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQ 714



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 255/539 (47%), Gaps = 15/539 (2%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  ++R+C+   D   G+ IH QV+K G +    + ++LV  Y KC       K   +  
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S W +LI+  V  G    +  LF  MR EG E +  T    L++      LE G+
Sbjct: 191 ERDVVS-WTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK 249

Query: 254 IVHCVAV-VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
            VH  A+ V DF  DL V +AL+ +Y+K   +  A+ +F  M  ++ V WN +++ + Q 
Sbjct: 250 QVHAEAIKVGDF-SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G  ++ L L   M  S      FT    +   +   N+  G+ +H+  +R G +    + 
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
             L+DMY +C     A K+F  ++   VVSWS++I       QS EA  +F  M+  GV 
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI 428

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            +  T+ +++ A  ++G L + + +H    K G    ++V  A+   Y K G ++    +
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E   ++D+I+WN+++S +  +       +++ QM      P++ TF+ +L +C +  
Sbjct: 489 F--EATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            V+ G+ +  ++ ++   + +     ++V++  +   +++A E + +   K D   W  +
Sbjct: 547 DVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVI 604

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           ++    +++    E   +  I M+ E      +  N +  A   +G +++ T    R L
Sbjct: 605 VAG---YAQDGQGEKAVKCFIQMQREG-----VKPNEFTLASSLSGCSRIATLDSGRQL 655


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/672 (33%), Positives = 373/672 (55%), Gaps = 9/672 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C +P  L   +Q HA+ ++++G+  N IL + L+  Y   G    ++ +F  +  
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQ-MLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRL 109

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             S  +  +++  +  G+++  LL Y +M      P + T+P+VI++C  L     G  +
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVV 169

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H ++  +GF+    VG +L++FY + +G   + + +  R        WN +++  V+NG 
Sbjct: 170 HDKIQFMGFELDVFVGSSLIKFYSE-NGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV-NT 272
            + +  +F  MR      +S T   +L        +  G  +H + V S    D  V NT
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288

Query: 273 -ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL+ +Y K   +E A+ +FD+ +  D VV   MIS Y  +G    +LE+   +++   R
Sbjct: 289 FALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMR 348

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
           A+  T  + + + + +  +  GK++H ++L+NG      V ++++DMY +C  L+ A + 
Sbjct: 349 ANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQT 408

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K  V W+SMI     + +  EA+ LF +M + G + D V+I   L AC N+ AL
Sbjct: 409 FIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 468

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
            + K +H + M+    S     +A+   Y+KCG +++A  +FD   ++ K+ ++WNS+I+
Sbjct: 469 HYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFD--TMEEKNEVSWNSIIA 526

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           AY  HG       L+  M    ++PD +TFL +++AC +AG V+EG   F+ M E  G  
Sbjct: 527 AYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIM 586

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
              EHYA MV+L GRAG ++EA  ++  MPF PDA VWG LL AC++H   ELAE+ +  
Sbjct: 587 ARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRN 646

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  ++P+N+G YVLLSN++A AG+W  V K+R+ +++RG++K PGCSWI++    H F A
Sbjct: 647 LFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVA 706

Query: 692 ADQSHPQADAIY 703
           AD+SHPQ+  IY
Sbjct: 707 ADRSHPQSSQIY 718



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 181/392 (46%), Gaps = 6/392 (1%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L+++L++  +   L  GR  H   +V+    +  + T LL MY    +  DAK +F ++ 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
                 WN MI  +   G    +L     M+  G   D +T    + +   + ++  G+ 
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H  +   G +  V V +SLI  Y E   ++ AR +FD + +K  V W+ M+ GYV +  
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV-NT 474
              A  +F EM+      + VT   +L  C +   +     LHG  +  GL   S V NT
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288

Query: 475 AIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
              I  Y KC  +EMA ++FD+      DI+   +MIS Y  +G  +   +++  + Q  
Sbjct: 289 FALIDIYFKCRDVEMARKIFDQRT--PVDIVVCTAMISGYVLNGMNNNALEIFRWLLQER 346

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           +R + +T   +L AC     +  G+ +   + ++ G+  S    ++++++  + G +D A
Sbjct: 347 MRANSVTLASVLPACAGLAALTLGKELHGHILKN-GHGGSCYVGSAIMDMYAKCGRLDLA 405

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            +    +  K DA  W  ++++C  + + E A
Sbjct: 406 HQTFIGISDK-DAVCWNSMITSCSQNGKPEEA 436


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/641 (33%), Positives = 362/641 (56%), Gaps = 5/641 (0%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           L S L+  Y   G +  +++VF+++ S  ++ ++  I+   +K  E+E++LL+++QM   
Sbjct: 345 LGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            + P E     +++  +CL     G   H  +VKLGF +   V +AL+ FY K +   +N
Sbjct: 405 GITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNM-IDN 463

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
              +  R        WNS+IS    NG + ++ ELF  M M+G E DS TL+++L +   
Sbjct: 464 AVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACAR 523

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
                +GR+VH  +V +    + S+  ALL MYS  +       +F  M+ K+ V W  M
Sbjct: 524 SHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAM 583

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I++Y ++G   +   LL  MV  G + D+F   + +   +  ++++ GK +H   +RNG 
Sbjct: 584 ITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGM 643

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           +  + V N+L++MY  C ++  AR +FD V  K ++SW+++I GY  ++ + E+  LFS+
Sbjct: 644 EKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSD 703

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M L+  + + VT+  ILPA  +I +LE  + +H Y+++ G    S  + A+   Y KCG 
Sbjct: 704 MLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGA 762

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           + +A  LFD  ++  K++I+W  MI+ Y  HG       L+ QM+ S V PD  +F  +L
Sbjct: 763 LLVARVLFD--RLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAIL 820

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
            AC ++GL  EG   F  M++ Y  EP  +HY  +V+LL   G++ EA E ++ MP +PD
Sbjct: 821 YACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPD 880

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           + +W  LL  C++H + +LAE  A+++  +EPEN G YVLL+NIYA A +W  V K++  
Sbjct: 881 SSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNK 940

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +  RGL++  GCSWIE+   VH F A +++HP+ + I   L
Sbjct: 941 IGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFL 981



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 155/647 (23%), Positives = 295/647 (45%), Gaps = 33/647 (5%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLI---LSSNLIDSYANLGLLSLSQQVFNSITS 93
           +++ LC   + L+     + ++      +I   L   L+ +Y   G L  ++ VF+ +  
Sbjct: 99  AVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPP 158

Query: 94  --PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              +  ++ +++   +K G++++ + +++QM    + P       V++  + L     GE
Sbjct: 159 RVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGE 218

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
            IH  + KLG      V +AL+  Y +C G  E+   +           WNS IS    N
Sbjct: 219 VIHGLLEKLGLGEACAVANALIALYSRC-GCMEDAMQVFDSMHARDAISWNSTISGYFSN 277

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL--- 268
           G  +++ +LF  M  EG E  S T++++L +  EL    +G++VH  ++ S    DL   
Sbjct: 278 GWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESV 337

Query: 269 ------SVNTALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISAYYQSGFPKESLEL 321
                 ++ + L+ MY K   +  A+ +FD M  K  V VWN+++  Y ++   +ESL L
Sbjct: 338 QSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M   G   D       +  I+ +     G   H  +++ G   Q +V N+LI  Y +
Sbjct: 398 FEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAK 457

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              ++ A  +FD +  +  +SW+S+I G  ++  + EA+ LF  M ++G E+D  T++++
Sbjct: 458 SNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSV 517

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           LPAC         + +HGYS+K GL   +S+  A+   Y+ C       ++F    +  K
Sbjct: 518 LPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIF--RNMAQK 575

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           ++++W +MI++Y + G + +   L  +M    ++PD+     +L        +++G+ + 
Sbjct: 576 NVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSV- 634

Query: 562 KEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWGPLLSA-C 616
                 Y      E    + N L        +M+EAR LV D     D   W  L+    
Sbjct: 635 ----HGYAIRNGMEKLLPVANALMEMYVNCRNMEEAR-LVFDHVTNKDIISWNTLIGGYS 689

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           + +   E   L ++ L+  +P    N V ++ I  A    + + + R
Sbjct: 690 RNNFANESFSLFSDMLLQFKP----NTVTMTCILPAVASISSLERGR 732



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 154/606 (25%), Positives = 286/606 (47%), Gaps = 32/606 (5%)

Query: 57  ILHGLHQNLIL------SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           ++HGL + L L      ++ LI  Y+  G +  + QVF+S+ + +++ + + +      G
Sbjct: 219 VIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-------- 162
            +++ + ++ +M  +    +  T   V+ +C+ L   + G+ +H   +K G         
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 163 DSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQNGKSEK 216
              D+ +G  LV  Y+KC      + G  +R F  + S+     WN ++    +  + E+
Sbjct: 339 SGIDEALGSKLVFMYVKC-----GDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEE 393

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           S  LF+ M   G   D   L  LL+    L     G + H   V   F    +V  AL+S
Sbjct: 394 SLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALIS 453

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
            Y+K   +++A ++FD+M  +D + WN +IS    +G   E++EL + M   G   D  T
Sbjct: 454 FYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTT 513

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            ++ + + +       G+ +H   ++ G   + S+ N+L+DMY  C D +   +IF ++ 
Sbjct: 514 LLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMA 573

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K VVSW++MI  Y       +   L  EM L+G++ D   + ++L       +L+  K 
Sbjct: 574 QKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKS 633

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +HGY+++ G+  L  V  A+   Y  C  +E A  +FD   + +KDII+WN++I  Y+++
Sbjct: 634 VHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDH--VTNKDIISWNTLIGGYSRN 691

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
              ++ F L++ M     +P+ +T   +L A  +   +E GR I          E S   
Sbjct: 692 NFANESFSLFSDMLL-QFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTS 750

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL--IS 634
            A +V++  + G +  AR L  D   K +   W  +++   MH   + A    E++    
Sbjct: 751 NA-LVDMYVKCGALLVARVLF-DRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSG 808

Query: 635 MEPENA 640
           +EP+ A
Sbjct: 809 VEPDTA 814



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 197/395 (49%), Gaps = 2/395 (0%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y++  G      + + LI  YA   ++  +  VF+ +   +++ + +++   +  G   +
Sbjct: 435 YLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSE 494

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + ++ +M +Q       T   V+ +C+    +  G  +H   VK G      + +AL++
Sbjct: 495 AIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLD 554

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y  C       +       K++ S W ++I+   + G  +K   L + M ++G + D  
Sbjct: 555 MYSNCSDWHSTNQIFRNMAQKNVVS-WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVF 613

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            + ++L      +SL+ G+ VH  A+ +   K L V  AL+ MY    ++E+A+++FD +
Sbjct: 614 AVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHV 673

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           ++KD + WN +I  Y ++ F  ES  L   M+   F+ +  T    + +++++ ++E G+
Sbjct: 674 TNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGR 732

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++HA  LR G        N+L+DMY +C  L  AR +FD +  K ++SW+ MI GY  H 
Sbjct: 733 EIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 792

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
              +A+ LF +M+  GVE D  +   IL AC + G
Sbjct: 793 CGKDAVALFEQMRGSGVEPDTASFSAILYACCHSG 827



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 208/442 (47%), Gaps = 18/442 (4%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF--DDVGDALVEFYIKCD--GGFENEKG 188
           +Y  V++ C       +  + HA +V+ G        +G  LV  Y+KC   GG      
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFD 154

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
            +  +  D++  W SL+S   + G  ++   LF+ M+  G   D+  +  +L+    L S
Sbjct: 155 EMPPRVADVRV-WTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGS 213

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           +  G ++H +       +  +V  AL+++YS+   +EDA  +FD M  +D + WN  IS 
Sbjct: 214 ITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISG 273

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG---- 364
           Y+ +G+   +++L   M   G      T ++ + + + +     GK +H   +++G    
Sbjct: 274 YFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWD 333

Query: 365 -----SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTHDQSLE 418
                S    ++ + L+ MY +C D+  AR++FD++ +K  V  W+ ++ GY    +  E
Sbjct: 334 LESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEE 393

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           +L LF +M   G+  D   +  +L     +         HGY +KLG  +  +V  A+  
Sbjct: 394 SLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALIS 453

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAK   I+ A  +FD  ++  +D I+WNS+IS    +G  S+  +L+ +M       D 
Sbjct: 454 FYAKSNMIDNAVLVFD--RMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 539 ITFLGLLTACVNAGLVEEGRII 560
            T L +L AC  +     GR++
Sbjct: 512 TTLLSVLPACARSHYWFVGRVV 533



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 204/420 (48%), Gaps = 33/420 (7%)

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVEL----KSLELGRIVHCVAVVSDFCKDLSV-NTA 273
           +L   +R+ G+  D G  +    + V+L    +SLE  R  H +          SV    
Sbjct: 78  DLAAALRLLGS--DGGVGVRSYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKR 135

Query: 274 LLSMYSKLASLEDAKMLFDKMSDK--DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           L+  Y K   L  A+M+FD+M  +  D  VW  ++SAY ++G  +E + L   M   G  
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D       +  I+++ +I  G+ +H  + + G     +V N+LI +Y  C  +  A ++
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FDS+  +  +SW+S I GY ++     A+ LFS+M  EG E+  VT++++LPAC  +G  
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 452 EHVKYLHGYSMKLG-LNSLSSVNTAI--------FISYAKCGCIEMAGELFDEEKIDSK- 501
              K +HGYSMK G L  L SV + I           Y KCG +  A  +FD   + SK 
Sbjct: 316 LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFD--AMPSKG 373

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD---LITFLGLLT--ACVNAGLVEE 556
           ++  WN ++  YAK  ++ +   L+ QM +  + PD   L   L  +T  +C   GLV  
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAH 433

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G ++    K  +G + +  +  ++++   ++  +D A  +   MP + D   W  ++S C
Sbjct: 434 GYLV----KLGFGTQCAVCN--ALISFYAKSNMIDNAVLVFDRMPHQ-DTISWNSVISGC 486


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/656 (32%), Positives = 377/656 (57%), Gaps = 3/656 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  ++ + S LI  Y++ GLL  ++  F+ +   + +L+  ++    K G+    + ++
Sbjct: 171 GLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLF 230

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           + M +    P   T    +  C+   D +SG ++H+  VK G +    V + L+  Y KC
Sbjct: 231 RNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKC 290

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
               ++   + +   +D    WN +IS  VQNG  +++  LF  M   GA  DS TL++L
Sbjct: 291 RC-LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSL 349

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L +  +L  L+ G+ VH   + +    D  + +AL+ +Y K   +  A+ L+D     D 
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV 409

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V+ + +IS Y  +G  +++L++   ++    + +  T  + + + +++  +  G+++H  
Sbjct: 410 VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGY 469

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           VLRN  + +  V ++L+DMY +C  L+ +  IF  +  K  V+W+SMI  +  + +  EA
Sbjct: 470 VLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEA 529

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF +M +EG++ + VTI + L AC ++ A+ + K +HG  +K  + +     +A+   
Sbjct: 530 LDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDM 589

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG +E+A  +F  E +  K+ ++WNS+ISAY  HG   +      +M++   +PD +
Sbjct: 590 YAKCGNMELALRVF--EFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHV 647

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL L++AC +AGLVEEG  +F+ M + Y   P  EH+A MV+L  R+G +D+A + + D
Sbjct: 648 TFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIAD 707

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPFKPDA +WG LL AC++H   ELA++ +++L  ++P N+G YVL+SNI A AG+W+GV
Sbjct: 708 MPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGV 767

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +K+R  ++D  + K PG SW+++    H F A+D+SHP+++ IYT L  L  E+ E
Sbjct: 768 SKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELRE 823



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 171/608 (28%), Positives = 308/608 (50%), Gaps = 33/608 (5%)

Query: 31  TATHSFSLLNLCENPQHLQ---QIHARYIILHGL--HQNLILSSNLIDSYANLGLLSLSQ 85
           +A    +LL  C +  HL    QIHAR ++   L  H +L L + L+  Y        + 
Sbjct: 31  SADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAV 90

Query: 86  QVFNSI---TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRS 140
            VF+++    + +SL +  +++  +  G +   +L Y +M      P+ D  T P+V++S
Sbjct: 91  AVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKS 150

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+ L     G  +H      G  S   VG AL++ Y   D G   +    +  F  +  R
Sbjct: 151 CAALGAVSLGRLVHRTARATGLASDVYVGSALIKMY--SDAGLLRDA---RDAFDGMPWR 205

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               WN ++   ++ G    +  LF+ MR+ G E +  TL   L        L  G  +H
Sbjct: 206 DCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLH 265

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            +AV     ++++V   LLSMY+K   L+DA  LF+ +   D V WN MIS   Q+G   
Sbjct: 266 SLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLD 325

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+L L   M+RSG R D  T ++ + +++ +  ++ GK++H  ++RN       + ++L+
Sbjct: 326 EALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALV 385

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           D+Y +C D+  AR ++D+ +   VV  S++I GYV +  S +AL++F  +  + ++ + V
Sbjct: 386 DIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAV 445

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T+ ++LPAC +I AL   + +HGY ++        V +A+   YAKCG ++++  +F   
Sbjct: 446 TVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIF--S 503

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K+  KD +TWNSMIS+++++G+  +   L+ QM    ++ + +T    L+AC +   +  
Sbjct: 504 KMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYY 563

Query: 557 GR-----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G+     II   +K     E      ++++++  + G+M+ A  + + MP K +   W  
Sbjct: 564 GKEIHGVIIKGPIKADIFAE------SALIDMYAKCGNMELALRVFEFMPDKNEVS-WNS 616

Query: 612 LLSACKMH 619
           ++SA   H
Sbjct: 617 IISAYGAH 624



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 227/455 (49%), Gaps = 7/455 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGA--EFDSGTLINLLRSTVELKSLELGRIVHCV 258
           WN LI      G    +   +  M    A    D+ TL  +++S   L ++ LGR+VH  
Sbjct: 107 WNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRT 166

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
           A  +    D+ V +AL+ MYS    L DA+  FD M  +D V+WN+M+  Y ++G    +
Sbjct: 167 ARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGA 226

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + L   M  SG   +  T    +S  +   ++  G Q+H+  ++ G + +V+V N+L+ M
Sbjct: 227 VRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSM 286

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  L+ A ++F+ +    +V+W+ MI G V +    EAL LF +M   G   D VT+
Sbjct: 287 YAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTL 346

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           +++LPA  ++  L+  K +HGY ++  ++  + + +A+   Y KC  +  A  L+D  + 
Sbjct: 347 VSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAAR- 405

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
            + D++  +++IS Y  +G   +  +++  + +  ++P+ +T   +L AC +   +  G+
Sbjct: 406 -AIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQ 464

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            I   +  +  YE      ++++++  + G +D +  +   M  K D   W  ++S+   
Sbjct: 465 EIHGYVLRN-AYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISSFSQ 522

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
           + E + A L   + + ME     N  + S + A A
Sbjct: 523 NGEPQEA-LDLFRQMCMEGIKYNNVTISSALSACA 556



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 163/308 (52%), Gaps = 2/308 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  YII + +H +  L S L+D Y     +  ++ ++++  + + ++  T++     
Sbjct: 363 KEVHG-YIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVL 421

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  EK L +++ +  Q + P   T   V+ +C+ +     G++IH  V++  ++    V
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYV 481

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL++ Y KC G  +    +  +     +  WNS+IS   QNG+ +++ +LF+ M MEG
Sbjct: 482 ESALMDMYAKC-GRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEG 540

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            ++++ T+ + L +   L ++  G+ +H V +      D+   +AL+ MY+K  ++E A 
Sbjct: 541 IKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELAL 600

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+ M DK+ V WN +ISAY   G  KES+  L  M   G++ D  T +A +S+ +   
Sbjct: 601 RVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAG 660

Query: 349 NIEWGKQM 356
            +E G Q+
Sbjct: 661 LVEEGLQL 668



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 123/266 (46%), Gaps = 12/266 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q+IH  Y++ +       + S L+D YA  G L LS  +F+ ++  + + + +++ + S+
Sbjct: 464 QEIHG-YVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQ 522

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE ++ L +++QM ++ +     T    + +C+ L     G++IH  ++K    +    
Sbjct: 523 NGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFA 582

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
             AL++ Y KC G  E    +  R F+ +  +    WNS+IS    +G  ++S      M
Sbjct: 583 ESALIDMYAKC-GNME----LALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRM 637

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           + EG + D  T + L+ +      +E G ++  C+         +     ++ +YS+   
Sbjct: 638 QEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGR 697

Query: 284 LEDAKMLFDKMSDK-DRVVWNIMISA 308
           L+ A      M  K D  +W  ++ A
Sbjct: 698 LDKAIQFIADMPFKPDAGIWGALLHA 723


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/664 (33%), Positives = 371/664 (55%), Gaps = 12/664 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   I+  G +++++  S L+D YA    L  S ++F+ I   N + +  I+    + 
Sbjct: 197 QVHG-LIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQN 255

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            E+   L ++K+M    +  ++  Y  V RSC+ L     G ++HA  +K  F S   VG
Sbjct: 256 DEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVG 315

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
            A ++ Y KC G   +     QR F  L       +N++I   V+N K  ++ + F+L+ 
Sbjct: 316 TATLDMYAKC-GSLADA----QRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLL 370

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G  F+  +L     +   +K    GR +H ++V S    ++ V  ++L MY K  +L 
Sbjct: 371 KSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALS 430

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           +A  +FD+M  +D V WN +I+A+ Q+G  +E+L L   M+R     D FT  + + + S
Sbjct: 431 EACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACS 490

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           + + +  G ++H  ++++G      V  +LIDMYC+C  +  A+KI D ++ +T+VSW++
Sbjct: 491 SQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNA 550

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I G+     S +A   F EM    V+ D  T   +L AC N+ ++   K +HG  +KL 
Sbjct: 551 IIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLE 610

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L+S   + + +   Y+KCG ++ +  +F  EK  +KD +TWN+MI  YA+HG   +    
Sbjct: 611 LHSDVYITSTLVDMYSKCGNMQDSALVF--EKAPNKDFVTWNAMICGYAQHGLGEEALGY 668

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M+  +VRP+  TF+ +L AC + G +++G   F  M   YG EP  EHY+ M++++G
Sbjct: 669 FERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIG 728

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           R+G + EA +L+++MPF+ DA +W  LLS CK+H   E+AE     ++ +EPE++   +L
Sbjct: 729 RSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACIL 788

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNIYA AG W  V++MR  +R   LKK PGCSWIE+   VH F   +++HP+ + IY I
Sbjct: 789 LSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPRYEEIYKI 848

Query: 706 LGIL 709
           L +L
Sbjct: 849 LSVL 852



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/573 (24%), Positives = 271/573 (47%), Gaps = 54/573 (9%)

Query: 112 YEKTLLVYKQMAL------QSMYPAE-DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
           Y KTL ++    +      Q+  P +  T+  +I+ CS       G++ HA+++  GF  
Sbjct: 17  YNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIP 76

Query: 165 FDDVGDALVEFYIKCD------------------------GGFEN--EKGMIQRKFKDLK 198
              + + L++ Y++C                          G+ +  E  +    F D  
Sbjct: 77  DVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTP 136

Query: 199 SR----WNSLISLAVQNGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGR 253
            R    WNS++S  +QNG+  KS ++F  M R E   FD  T   +L++   L+   LG 
Sbjct: 137 KRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGI 196

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            VH + V   F KD+   +ALL MY+K   L+D+  +F ++  K+ V W+ +I+   Q+ 
Sbjct: 197 QVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQND 256

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
                LEL   M + G         +   S + +  ++ G Q+HA+ L+      ++V  
Sbjct: 257 EHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGT 316

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           + +DMY +C  L  A++IF+S+   ++  ++++I G V +++  EAL+ F  +   G+  
Sbjct: 317 ATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGF 376

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           + +++     AC +I      + LH  S+K  L S   V  +I   Y KC  +  A  +F
Sbjct: 377 NEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMF 436

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC----- 548
           DE  ++ +D ++WN++I+A+ ++G+  +   L+  M +  + PD  T+  +L AC     
Sbjct: 437 DE--MERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQA 494

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
           +N+G+    RII    K   G +       +++++  + G ++EA++ + D   +     
Sbjct: 495 LNSGMEIHNRII----KSGLGLDSFVG--GALIDMYCKCGMIEEAKK-IHDRIEQQTMVS 547

Query: 609 WGPLLSACKM--HSETELAELTAEKLISMEPEN 639
           W  +++   +  HSE   +       +S++P+N
Sbjct: 548 WNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDN 580


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/658 (34%), Positives = 364/658 (55%), Gaps = 7/658 (1%)

Query: 58  LHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLL 117
           L GL +++ + S+LI  YA  G LS +Q +F++I   +S+L+  +L    K G+    + 
Sbjct: 86  LMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIK 145

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCS--CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           ++ +M    + P   T+  V+  C+   +LD   G ++H   V  G +    V + L+  
Sbjct: 146 IFLEMRHSEIKPNSVTFACVLSVCASEAMLDL--GTQLHGIAVGCGLELDSPVANTLLAM 203

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           Y KC       K        DL S WN +IS  VQNG   ++  LF+ M   G + DS T
Sbjct: 204 YSKCQCLQAARKLFDTLPQSDLVS-WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSIT 262

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
             + L    EL SL+  + +H   +      D+ + +AL+ +Y K   +E A+    + S
Sbjct: 263 FASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSS 322

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
             D VV   MIS Y  +G  KE+LE    +V+   +    T  +   + + +  +  GK+
Sbjct: 323 SFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H ++++   D +  V ++++DMY +C  L+ A ++F+ +  K  + W+SMI     + +
Sbjct: 383 LHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGR 442

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA+ LF +M +EG   D V+I   L AC N+ AL + K +HG  +K  L S     ++
Sbjct: 443 PGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESS 502

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG +  +  +FD  ++  K+ ++WNS+ISAY  HGD  +C  L+ +M ++ ++
Sbjct: 503 LIDMYAKCGNLNFSRRVFD--RMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQ 560

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +TFLG+++AC +AG V+EG   +  M E YG     EHYA + ++ GRAG + EA E
Sbjct: 561 PDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFE 620

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            +  MPF PDA VWG LL AC +H   ELAE+ ++ L  ++P N+G YVLL+N+ A AGK
Sbjct: 621 TINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGK 680

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           W  V K+R+ +++RG++K PG SWIE+    H F AAD SHP    IY++L  L LE+
Sbjct: 681 WRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLEL 738



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 274/549 (49%), Gaps = 9/549 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G L  ++ +F ++    +  +  +++  +  G++   LL Y +M    + P + T+
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P+V+++C  L     G+ +H  V  +G      VG +L++ Y + +G   + + +     
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAE-NGHLSDAQYLFDNIP 120

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     WN +++  V+NG S  + ++F  MR    + +S T   +L        L+LG  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H +AV      D  V   LL+MYSK   L+ A+ LFD +   D V WN +IS Y Q+G 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E+  L   M+ +G + D  T  + +  ++ + +++  K++H  ++R+     V + ++
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LID+Y +C D+  A+K      +   V  ++MI GYV + ++ EAL  F  +  E ++  
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VT  +I PA   + AL   K LHG  +K  L+    V +AI   YAKCG +++A  +F+
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             +I  KD I WNSMI++ +++G   +   L+ QM     R D ++  G L+AC N   +
Sbjct: 421 --RITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPAL 478

Query: 555 EEGRIIFKEMKESYGYEPSQEHYA--SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
             G+ I   M +        + YA  S++++  + G+++ +R +   M  K +   W  +
Sbjct: 479 HYGKEIHGLMIKG---PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVS-WNSI 534

Query: 613 LSACKMHSE 621
           +SA   H +
Sbjct: 535 ISAYGNHGD 543



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 148/294 (50%), Gaps = 9/294 (3%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY +  SL+DAK LF  +       WN MI  +   G    +L   + M+ +G   D +T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               V +   +K+++ GK +H  V   G    V V +SLI +Y E   L+ A+ +FD++ 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K  V W+ M+ GYV +  S  A+++F EM+   ++ + VT   +L  C +   L+    
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           LHG ++  GL   S V   +   Y+KC C++ A +LFD   +   D+++WN +IS Y ++
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFD--TLPQSDLVSWNGIISGYVQN 238

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           G   +   L+  M  + ++PD ITF   L  CVN  L        K  KE +GY
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFL-PCVNELLS------LKHCKEIHGY 285



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 157/308 (50%), Gaps = 2/308 (0%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +H ++IH  YII H +  ++ L S LID Y     + ++Q+     +S ++++  T++  
Sbjct: 277 KHCKEIHG-YIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISG 335

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
               G+ ++ L  ++ +  + M P   T+  +  + + L     G+++H  ++K   D  
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEK 395

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             VG A+++ Y KC G  +    +  R  +     WNS+I+   QNG+  ++  LF+ M 
Sbjct: 396 CHVGSAILDMYAKC-GRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMG 454

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           MEG  +D  ++   L +   L +L  G+ +H + +      DL   ++L+ MY+K  +L 
Sbjct: 455 MEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLN 514

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            ++ +FD+M +K+ V WN +ISAY   G  KE L L   M+R+G + D  T +  +S+  
Sbjct: 515 FSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574

Query: 346 TMKNIEWG 353
               ++ G
Sbjct: 575 HAGQVDEG 582


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/661 (35%), Positives = 366/661 (55%), Gaps = 79/661 (11%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDS---YANLGLLSLSQQVFNSITSPNSLLYGTILK 104
           L+ IHA+ +I  GLH      S LI+      +   L  +  VF +I  PN L++ T+ +
Sbjct: 3   LRMIHAQ-MIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
             +   +    L +Y  M    + P   T+PF+++SC+    F  G++IH  V+KLG+D 
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD- 120

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
                   ++ Y+                         SLIS+ VQNG+ E + ++    
Sbjct: 121 --------LDLYVH-----------------------TSLISMYVQNGRLEDARKV---- 145

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
                 FD  +                              +D+   TAL++ Y+    +
Sbjct: 146 ------FDQSSH-----------------------------RDVVSYTALITGYASKGYI 170

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
             A+ +FD++  KD V WN MIS Y ++G  KE+LEL   M+++  R D  T ++ VS+ 
Sbjct: 171 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 230

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           +   +IE G+Q+H+ +  +G    + + N+LID+Y +C ++  A  +F+ +  K V+SW+
Sbjct: 231 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 290

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I GY   +   EAL LF EM   G   + VT+++ILPAC ++GA+E  +++H Y  K 
Sbjct: 291 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 350

Query: 465 --GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
             G+ + SS  T++   YAKCG IE A ++FD   I ++ + +WN+MI  +A HG  +  
Sbjct: 351 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDS--ILNRSLSSWNAMIFGFAMHGRANAA 408

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           F ++++M+++++ PD ITF+GLL+AC ++G+++ GR IF+ MKE Y   P  EHY  M++
Sbjct: 409 FDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMID 468

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLG +G   EA E++  M  +PD  +W  LL ACKMH   EL E  A+ LI +EP+N G+
Sbjct: 469 LLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGS 528

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           YVLLSNIYA AG+WN VAK+R  L D+G+KK PGCS IEI  +VHEF   D+ HP+   I
Sbjct: 529 YVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREI 588

Query: 703 Y 703
           Y
Sbjct: 589 Y 589


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/705 (33%), Positives = 386/705 (54%), Gaps = 23/705 (3%)

Query: 14  GHVKFLRFPANQTRPHMTATHSF-SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSS 69
           G   F RF   Q    +  ++++ S+LN   +   L+   ++H+ + +  GL  +L + +
Sbjct: 112 GQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHS-HAVNAGLALDLRVGN 170

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            L+  YA  G +  ++ VF+ +   +   +  ++  L++ G  ++   ++ QM      P
Sbjct: 171 ALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLP 230

Query: 130 AEDTYPFVIRSCSCL----LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
              TY  ++ + +      L+++  +++H    K GF S   VG+AL+  Y KC G  ++
Sbjct: 231 NLTTYLSILNASAITSTGALEWV--KEVHKHAGKAGFISDLRVGNALIHMYAKC-GSIDD 287

Query: 186 EK----GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            +    GM  R   D+ S WN++I    QNG   ++F +F  M+ EG   DS T ++LL 
Sbjct: 288 ARLVFDGMCDR---DVIS-WNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           + V   + E  + VH  AV      DL V +A + MY +  S++DA+++FDK++ ++   
Sbjct: 344 THVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTT 403

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN MI    Q    +E+L L + M R GF  D  T +  +S+    + +EW K++H+  +
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
             G    + V N+L+ MY +C +   A+++FD +  + V +W+ MI G   H    EA  
Sbjct: 464 DAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFS 522

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF +M  EG+  D  T ++IL AC + GALE VK +H +++  GL S   V  A+   YA
Sbjct: 523 LFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYA 582

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG ++ A  +FD+  +  +D+ +W  MI   A+HG       L+ +MK    +P+  +F
Sbjct: 583 KCGSVDDARRVFDD--MLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSF 640

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC +AGLV+EGR  F  + + YG EP+ EHY  MV+LLGRAG ++EA+  + +MP
Sbjct: 641 VAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMP 700

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +P    WG LL AC  +   E+AE  A++ + ++P++A  YVLLSNIYAA G W     
Sbjct: 701 IEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLL 760

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +R+ ++ RG++K PG SWIE+   +H F   D SHP++  IY  L
Sbjct: 761 VRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKL 805



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 166/576 (28%), Positives = 292/576 (50%), Gaps = 15/576 (2%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   +++G  E  + VY QM  +   P E TY  ++++C   +    G+KIHA +++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           F S   V  ALV  Y+KC G  ++ + +  +  +     W  +I      G+ +++F  F
Sbjct: 61  FQSDVRVETALVNMYVKC-GSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M+ EG   +S T +++L +     +LE  + VH  AV +    DL V  AL+ MY+K 
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT--AIA 339
            S++DA+++FD M ++D   W +MI    Q G  +E+  L + M R G   +L T  +I 
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
             S+I++   +EW K++H +  + G    + V N+LI MY +C  ++ AR +FD +  + 
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           V+SW++MI G   +    EA  +F +M+ EG   D  T +++L   V+ GA E VK +H 
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           +++++GL S   V +A    Y +CG I+ A  +FD  K+  +++ TWN+MI   A+    
Sbjct: 360 HAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFD--KLAVRNVTTWNAMIGGVAQQKCG 417

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA- 578
            +   L+ QM++    PD  TF+ +L+A V     EE     KE+  SY  +        
Sbjct: 418 REALSLFLQMRREGFFPDATTFVNILSANVG----EEALEWVKEV-HSYAIDAGLVDLRV 472

Query: 579 --SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS-ETELAELTAEKLISM 635
             ++V++  + G+   A+++  DM  + +   W  ++S    H    E   L  + L   
Sbjct: 473 GNALVHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
              +A  YV + +  A+ G    V ++ +   + GL
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGL 567


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/697 (33%), Positives = 374/697 (53%), Gaps = 47/697 (6%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G+  ++ L ++LI+ Y+    ++ ++QVF  +T  + + + +++   +      K    +
Sbjct: 86  GVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTF 145

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           ++M   ++ P   T+  ++++C+       G KIH  V  +G ++   V  AL+  Y KC
Sbjct: 146 ERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKC 205

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
                 E  +    F  +  R    W ++I    Q+ K  ++FEL++ M   G   ++ T
Sbjct: 206 -----GEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVT 260

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
            ++LL S    ++L  GR +H          D+ V  AL++MY K  S+++A+ +FD+MS
Sbjct: 261 FVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS 320

Query: 296 DKDRVVWNIMISAYYQSGFP-KESL----ELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
            +D + W+ MI+ Y QSG+  KES+    +LL  M R G   +  T ++ + + +    +
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGAL 380

Query: 351 EWGKQMHANVLRNG----SDYQVSVHN---------------------------SLIDMY 379
           E G+Q+HA + + G       Q ++ N                           S + MY
Sbjct: 381 EQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMY 440

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C DL+ A K+F  + T+ VVSW+ MI GY  +   ++   L S MK EG + D VT+I
Sbjct: 441 IKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVI 500

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            IL AC  +  LE  K +H  ++KLGL S + V T++   Y+KCG +  A  +FD  K+ 
Sbjct: 501 TILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFD--KMS 558

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           ++D + WN+M++ Y +HGD  +   L+ +M +  V P+ IT   +++AC  AGLV+EGR 
Sbjct: 559 NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGRE 618

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           IF+ M+E +   P ++HY  MV+LLGRAG + EA E ++ MP +PD  VW  LL ACK H
Sbjct: 619 IFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSH 678

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
           +  +LAE  A  ++ +EP  A  Y+ LSNIYA AG+W+   K+R  + DRGLKK  G S 
Sbjct: 679 NNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESS 738

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           IEI   +H F A D +HP+ DAI+  L  L  E+ E 
Sbjct: 739 IEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEA 775



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 179/664 (26%), Positives = 317/664 (47%), Gaps = 54/664 (8%)

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +  P S+  G + + L K G   + + +   +  + +    +TY  VI  C+    F  G
Sbjct: 17  LDGPTSVSGGEVWR-LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDG 75

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           + +H Q+ +LG +    +G++L+ FY K +     E+   +   +D+ + W+S+I+    
Sbjct: 76  KMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVT-WSSMIAAYAG 134

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           N    K+F+ F+ M     E +  T +++L++      LE GR +H +        D++V
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            TAL++MYSK   +  A  +F KM++++ V W  +I A  Q     E+ EL   M+++G 
Sbjct: 195 ATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI 254

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             +  T ++ ++S +T + +  G+++H+++   G +  + V N+LI MYC+C  +  AR+
Sbjct: 255 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEARE 314

Query: 391 IFDSVKTKTVVSWSSMIKGYV----THDQSL-EALRLFSEMKLEGVEVDFVTIINILPAC 445
           IFD +  + V+SWS+MI GY        +S+ E  +L   M+ EGV  + VT ++IL AC
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA---------------- 489
              GALE  + +H    K+G     S+ TAIF  YAKCG I  A                
Sbjct: 375 TAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWT 434

Query: 490 ---------GELFDEEKI----DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
                    G+L   EK+     ++++++WN MI+ YA++GD  + F+L + MK    +P
Sbjct: 435 SFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQP 494

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D +T + +L AC     +E G+++  E  +  G E       S++ +  + G + EAR +
Sbjct: 495 DRVTVITILEACGALAGLERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGQVAEARTV 553

Query: 597 VKDMPFKPDARVWGPLLSACKMHSET-ELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
              M  + D   W  +L+    H +  E  +L    L   +   + N + L+ + +A  +
Sbjct: 554 FDKMSNR-DTVAWNAMLAGYGQHGDGLEAVDLFKRML---KERVSPNEITLTAVISACSR 609

Query: 656 WNGVAKMRTFLR--DRGLKKTP-----GCSWIEIGKL-----VHEFWAADQSHPQADAIY 703
              V + R   R      K TP     GC    +G+        EF  +    P     +
Sbjct: 610 AGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWH 669

Query: 704 TILG 707
            +LG
Sbjct: 670 ALLG 673


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/676 (34%), Positives = 384/676 (56%), Gaps = 12/676 (1%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C N    +Q+HA  ++L G  Q+++L + L+  YA LG LSLS   F  I   N   + +
Sbjct: 61  CTNINVAKQLHALLLVL-GKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNS 119

Query: 102 ILKNLSKFGEYEKTL-LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           ++    + G Y  ++  V + ++L  + P   T+P V+++C  L D   GEK+H  V+K+
Sbjct: 120 MVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKM 176

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           GF+    V  +L+  Y +        K  +    +D+ S WN++IS   QNG   ++  +
Sbjct: 177 GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGS-WNAMISGFCQNGNVAEALRV 235

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
              M+ E  + D+ T+ ++L    +   +  G +VH   +      D+ V+ AL++MYSK
Sbjct: 236 LDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSK 295

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              L+DA+ +FD M  +D V WN +I+AY Q+  P  +L     M+  G R DL T ++ 
Sbjct: 296 FGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355

Query: 341 VSSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            S    + +   G+ +H  V+R    +  + + N+L++MY +   ++CAR +F+ + ++ 
Sbjct: 356 ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRD 415

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV--DFVTIINILPACVNIGALEHVKYL 457
           V+SW+++I GY  +  + EA+  ++ M+ EG  +  +  T ++ILPA  ++GAL+    +
Sbjct: 416 VISWNTLITGYAQNGLASEAIDAYNMME-EGRTIVPNQGTWVSILPAYSHVGALQQGMKI 474

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           HG  +K  L     V T +   Y KCG +E A  LF E  I  +  + WN++IS+   HG
Sbjct: 475 HGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYE--IPQETSVPWNAIISSLGIHG 532

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
              +  +L+  M+   V+ D ITF+ LL+AC ++GLV+E +  F  M++ Y  +P+ +HY
Sbjct: 533 HGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHY 592

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
             MV+L GRAG++++A  LV +MP + DA +WG LL+AC++H   EL    +++L+ ++ 
Sbjct: 593 GCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDS 652

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
           EN G YVLLSNIYA  GKW G  K+R+  RDRGL+KTPG S + +G +V  F+A +QSHP
Sbjct: 653 ENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHP 712

Query: 698 QADAIYTILGILELEI 713
           Q   IY  L +L  ++
Sbjct: 713 QCAEIYEELRVLNAKM 728


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 375/689 (54%), Gaps = 16/689 (2%)

Query: 36  FSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S+L  C +P  L+   +IH++ II  G  ++  + ++L+  Y   G L  ++QVF  I+
Sbjct: 132 ISILTACYSPAELENGKKIHSQ-IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS 190

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + + Y T+L   ++    ++ L ++ QM+ + + P + TY  ++ + +       G++
Sbjct: 191 PRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKR 250

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           IH   V+ G +S   VG ALV   ++C G  ++ K    + FK +  R    +N+LI+  
Sbjct: 251 IHKLTVEEGLNSDIRVGTALVTMCVRC-GDVDSAK----QAFKGIADRDVVVYNALIAAL 305

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            Q+G + ++FE +  MR +G   +  T +++L +    K+LE G+++H          D+
Sbjct: 306 AQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +  AL+SMY++   L  A+ LF  M  +D + WN +I+ Y +     E++ L   M   
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G +    T +  +S+ +       GK +H ++LR+G      + N+L++MY  C  L  A
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEA 485

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           + +F+  + + V+SW+SMI G+  H     A +LF EM+ E +E D +T  ++L  C N 
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            ALE  K +HG   + GL    ++  A+   Y +CG ++ A  +F    +  +D+++W +
Sbjct: 546 EALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF--HSLQHRDVMSWTA 603

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           MI   A  G+  +  +L+ QM+    RP D  TF  +L+AC +AGLV EG  IF  M+  
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESE 663

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           YG  P+ EHY  +V LLGRA    EA  L+  MPF PDA VW  LL AC++H    LAE 
Sbjct: 664 YGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEH 723

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A   + +   N   Y+LLSN+YAAAG+W+ VAK+R  +  RG++K PG SWIE+  ++H
Sbjct: 724 AANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIH 783

Query: 688 EFWAADQSHPQADAIYTILGILELEIMEG 716
           EF AAD+SHP+   IY  L  L +E+ E 
Sbjct: 784 EFIAADRSHPETAEIYAELKRLSVEMEEA 812



 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 169/602 (28%), Positives = 314/602 (52%), Gaps = 10/602 (1%)

Query: 24  NQTRPHMTATHSF-SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLG 79
           +Q RP  T   ++ +LL  C   + L   ++IHA+ ++  G+  ++ LS+ LI+ Y    
Sbjct: 18  HQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQ-MVEAGVGPDIFLSNLLINMYVKCR 76

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            +  + QVF  +   + + + +++   ++ G  +K   ++++M      P + TY  ++ 
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT 136

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C    +  +G+KIH+Q++K G+     V ++L+  Y KC       +       +D+ S
Sbjct: 137 ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            +N+++ L  Q    ++   LF  M  EG   D  T INLL +      L+ G+ +H + 
Sbjct: 197 -YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V      D+ V TAL++M  +   ++ AK  F  ++D+D VV+N +I+A  Q G   E+ 
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAF 315

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           E    M   G   +  T ++ +++ ST K +E GK +H+++  +G    V + N+LI MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
             C DL  AR++F ++  + ++SW+++I GY   +   EA+RL+ +M+ EGV+   VT +
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC N  A    K +H   ++ G+ S   +  A+   Y +CG +  A  +F  E   
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF--EGTQ 493

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           ++D+I+WNSMI+ +A+HG +   +KL+ +M+  ++ PD ITF  +L+ C N   +E G+ 
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           I   + ES G +       +++N+  R G + +AR +   +  + D   W  ++  C   
Sbjct: 554 IHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQ 611

Query: 620 SE 621
            E
Sbjct: 612 GE 613



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/512 (28%), Positives = 265/512 (51%), Gaps = 13/512 (2%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  ++++C+        ++IHAQ+V+ G      + + L+  Y+KC    +  +   + 
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +D+ S WNSLIS   Q G  +K+F+LF+ M+  G   +  T I++L +      LE G
Sbjct: 89  PRRDVIS-WNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H   + + + +D  V  +LLSMY K   L  A+ +F  +S +D V +N M+  Y Q 
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
            + KE L L   M   G   D  T I  + + +T   ++ GK++H   +  G +  + V 
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
            +L+ M   C D++ A++ F  +  + VV ++++I     H  ++EA   +  M+ +GV 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           ++  T ++IL AC    ALE  K +H +  + G +S   +  A+   YA+CG +  A EL
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F    +  +D+I+WN++I+ YA+  D  +  +LY QM+   V+P  +TFL LL+AC N+ 
Sbjct: 388 F--YTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
              +G++I +++  S G + +     +++N+  R G + EA+ + +    + D   W  +
Sbjct: 446 AYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSM 503

Query: 613 LSACKMHSETELA-----ELTAEKLISMEPEN 639
           ++    H   E A     E+  E+L   EP+N
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEEL---EPDN 532


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/709 (35%), Positives = 385/709 (54%), Gaps = 81/709 (11%)

Query: 10  SLQSGHVKFLRFPANQTRPHMTATH--SFSLLNLCENPQHLQQIHARYIILHGLHQNLIL 67
           ++ S    F   P++   P+ +  +  S SLL+ C+  Q L+ IHA+ I + GLH     
Sbjct: 9   TVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKI-GLHNTNYA 67

Query: 68  SSNLIDS---YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
            S LI+      +   L  +  VF +I  PN L++ T+ +  +   +    L +Y  M  
Sbjct: 68  LSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMIS 127

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
             + P   T+PFV++SC+    F  G++IH  V+KLG D         ++ Y+       
Sbjct: 128 LGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCD---------LDLYVH------ 172

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
                             SLIS+ VQNG+ E + ++F                       
Sbjct: 173 -----------------TSLISMYVQNGRLEDAHKVFD---------------------- 193

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
             KS                 +D+   TAL+  Y+    +E+A+ LFD++  KD V WN 
Sbjct: 194 --KSPH---------------RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNA 236

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MIS Y ++G  KE+LEL   M+++  R D  T +  VS+ +   +IE G+Q+H  +  +G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               + + N+LID+Y +C +L  A  +F+ +  K V+SW+++I GY   +   EAL LF 
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAK 482
           EM   G   + VT+++ILPAC ++GA++  +++H Y  K   G+ + SS+ T++   YAK
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG IE A ++F+   I  K + +WN+MI  +A HG     F L+++M++  ++PD ITF+
Sbjct: 417 CGDIEAAHQVFNS--ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
           GLL+AC ++G+++ GR IF+ M + Y   P  EHY  M++LLG +G   EA E++  M  
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
           +PD  +W  LL ACKMH   EL E  AE LI +EPEN G+YVLLSNIYA+AG+WN VAK 
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKT 594

Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           R  L D+G+KK PGCS IEI  +VHEF   D+ HP+   IY +L  +E+
Sbjct: 595 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 643


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/659 (33%), Positives = 369/659 (55%), Gaps = 5/659 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G+  N  ++S+LI +Y   G + +  ++F+ +   + +++  +L   +K G  +  +  +
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M +  + P   T+  V+  C+  L    G ++H  VV  G D    + ++L+  Y KC
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G F++   + +   +     WN +IS  VQ+G  E+S   F  M   G   D+ T  +L
Sbjct: 288 -GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL 346

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S  + ++LE  + +HC  +      D+ + +AL+  Y K   +  A+ +F + +  D 
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           VV+  MIS Y  +G   +SLE+   +V+     +  T ++ +  I  +  ++ G+++H  
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +++ G D + ++  ++IDMY +C  +N A +IF+ +  + +VSW+SMI      D    A
Sbjct: 467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAA 526

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + +F +M + G+  D V+I   L AC N+ +    K +HG+ +K  L S     + +   
Sbjct: 527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDM 586

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDL 538
           YAKCG ++ A  +F   K   K+I++WNS+I+A   HG       L+ +M ++S +RPD 
Sbjct: 587 YAKCGNLKAAMNVFKTMK--EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQ 644

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL ++++C + G V+EG   F+ M E YG +P QEHYA +V+L GRAG + EA E VK
Sbjct: 645 ITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVK 704

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MPF PDA VWG LL AC++H   ELAE+ + KL+ ++P N+G YVL+SN +A A +W  
Sbjct: 705 SMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWES 764

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI-MEG 716
           V K+R+ +++R ++K PG SWIEI K  H F + D +HP++  IY++L  L  E+ +EG
Sbjct: 765 VTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEG 823



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 168/644 (26%), Positives = 320/644 (49%), Gaps = 16/644 (2%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C NP  L+Q   +HA ++I++ +  +      ++  YA  G  S   ++F  +   
Sbjct: 41  LLQACSNPNLLRQGKQVHA-FLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR 99

Query: 95  NSLL--YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            S +  + +I+ +  + G   + L  Y +M    + P   T+P ++++C  L +F   + 
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF 159

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +   V  LG D  + V  +L++ Y++  G  +    +  R  +     WN +++   + G
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLE-YGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             +   + F +MRM+    ++ T   +L        ++LG  +H + VVS    + S+  
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           +LLSMYSK    +DA  LF  MS  D V WN MIS Y QSG  +ESL     M+ SG   
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP 338

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T  + + S+S  +N+E+ KQ+H  ++R+     + + ++LID Y +C  ++ A+ IF
Sbjct: 339 DAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIF 398

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
               +  VV +++MI GY+ +   +++L +F  +    +  + +T+++ILP    + AL+
Sbjct: 399 SQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALK 458

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + LHG+ +K G ++  ++  A+   YAKCG + +A E+F  E++  +DI++WNSMI+ 
Sbjct: 459 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIF--ERLSKRDIVSWNSMITR 516

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYGYE 571
            A+  + S    ++ QM  S +  D ++    L+AC N      G+ I   M K S   +
Sbjct: 517 CAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASD 576

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
              E  ++++++  + G++  A  + K M  K +   W  +++AC  H + + +     +
Sbjct: 577 VYSE--STLIDMYAKCGNLKAAMNVFKTMKEK-NIVSWNSIIAACGNHGKLKDSLCLFHE 633

Query: 632 LI---SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           ++    + P+      ++S+         GV   R+   D G++
Sbjct: 634 MVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQ 677



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 227/475 (47%), Gaps = 17/475 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   +++ G+     + ++L+  Y+  G    + ++F  ++  +++ +  ++    + 
Sbjct: 260 QLHG-LVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDD 167
           G  E++L  + +M    + P   T+  ++ S S   +    ++IH  +++  +  D F  
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIF-- 376

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKL 223
           +  AL++ Y KC G       M Q  F    S     + ++IS  + NG    S E+F+ 
Sbjct: 377 LTSALIDAYFKCRG-----VSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRW 431

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           +       +  TL+++L     L +L+LGR +H   +   F    ++  A++ MY+K   
Sbjct: 432 LVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +  A  +F+++S +D V WN MI+   QS  P  ++++   M  SG   D  +  AA+S+
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + + +  +GK +H  ++++     V   ++LIDMY +C +L  A  +F ++K K +VSW
Sbjct: 552 CANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSW 611

Query: 404 SSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYS 461
           +S+I     H +  ++L LF EM +  G+  D +T + I+ +C ++G + E V++    +
Sbjct: 612 NSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMT 671

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
              G+         +   + + G +  A E          D   W +++ A   H
Sbjct: 672 EDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPF-PPDAGVWGTLLGACRLH 725



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 170/339 (50%), Gaps = 4/339 (1%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
           EN ++ +QIH  YI+ H +  ++ L+S LID+Y     +S++Q +F+   S + +++  +
Sbjct: 354 ENLEYCKQIHC-YIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAM 412

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +      G Y  +L +++ +    + P E T   ++     LL    G ++H  ++K GF
Sbjct: 413 ISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGF 472

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           D+  ++G A+++ Y KC G       + +R  K     WNS+I+   Q+     + ++F+
Sbjct: 473 DNRCNIGCAVIDMYAKC-GRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFR 531

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M + G  +D  ++   L +   L S   G+ +H   +      D+   + L+ MY+K  
Sbjct: 532 QMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCG 591

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAV 341
           +L+ A  +F  M +K+ V WN +I+A    G  K+SL L   MV +SG R D  T +  +
Sbjct: 592 NLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEII 651

Query: 342 SSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMY 379
           SS   + +++ G +   ++  + G   Q   +  ++D++
Sbjct: 652 SSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLF 690


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/674 (34%), Positives = 369/674 (54%), Gaps = 79/674 (11%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA---NLGLLSLSQQVFNSI 91
           S SLL+ C+  Q L+ IHA+ +I  GLH      S LI+      +   L+ +  VF+SI
Sbjct: 5   SLSLLHNCKTLQSLRIIHAK-MIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
             PN L++ T+ +  +   +    L +Y  M    + P   T+PF++++C+    F  G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           +IH  V+KLG D         ++ Y+                         SLI++ V+N
Sbjct: 124 QIHGHVLKLGCD---------LDLYVH-----------------------TSLIAMYVKN 151

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+ E + ++F                                            +D+   
Sbjct: 152 GRXEDARKVFD---------------------------------------QSSHRDVVSY 172

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TAL+  Y+    +  A+ +FD++  KD V WN +IS Y ++G  KE+LEL   M+++  +
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T +  +S+ +   +IE G+Q+H+ +  +G    + + N+LID+Y +C ++  A  +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +  K V+SW+++I GY   +   EAL LF EM   G   + VT+++ILPAC ++GA+
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 452 EHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +  +++H Y  K   G+++ SS+ T++   YAKCG IE A ++FD   + ++ + +WN+M
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDS--MLNRSLSSWNAM 410

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  +A HG  +  F ++++M++  + PD ITF+GLL+AC ++G+++ GR IF+ M E Y 
Sbjct: 411 IFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYK 470

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P  EHY  M++LLG +G   EA E++  M   PD  +W  LL ACKMH   EL E  A
Sbjct: 471 ITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFA 530

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           + LI +EP+N+G+YVLLSNIYA AG+WN VAK R  L D+G+KK PGCS IEI  +VHEF
Sbjct: 531 QNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 690 WAADQSHPQADAIY 703
              D+ HP+   IY
Sbjct: 591 IIGDKLHPRNREIY 604



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 118/292 (40%), Gaps = 24/292 (8%)

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIF---ISYAKCGCIEMAGELFDEEKIDSKDI 503
           N   L+ ++ +H   +K GL++ +   + +    +       +  A  +FD   I   ++
Sbjct: 11  NCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDS--IQEPNL 68

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           + WN+M   +A   D      LY  M    + P+  TF  LL AC  +    EG+ I   
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGH 128

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW----------GPLL 613
           + +  G +     + S++ +  + G  ++AR+ V D     D   +          G + 
Sbjct: 129 VLK-LGCDLDLYVHTSLIAMYVKNGRXEDARK-VFDQSSHRDVVSYTALIKGYASNGYIX 186

Query: 614 SACKMHSETELAELTA-EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           SA KM  E  + ++ +   LIS   E  GNY     ++    K N      T +    L 
Sbjct: 187 SAQKMFDEIPVKDVVSWNALISGYAE-TGNYKEALELFKEMMKTNVKPDESTMVTV--LS 243

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
                + IE+G+ VH  W  D  H     +  +  +++L I  G  E++  L
Sbjct: 244 ACAQSASIELGRQVHS-WIDD--HGFGSNLKIVNALIDLYIKCGEVETASGL 292


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/642 (34%), Positives = 360/642 (56%), Gaps = 5/642 (0%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSL-LYGTILKNLSKFGEYEKTLLVYKQMAL 124
           +L   L+  Y   G L  +++VF+ +   + + ++  ++   +K G+  + +L++++M  
Sbjct: 130 VLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHC 189

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
             + P   T   V++  + L     GE +H  + KLGF S   VG+AL+ FY K +   +
Sbjct: 190 CGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKD 249

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
                     +D+ S WNS+IS    NG  +K+ ELF  M +EG E DS TL+++L +  
Sbjct: 250 AILVFDGMPHRDVIS-WNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACA 308

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           EL  L LGR+VH  +V + F    S+   LL MYS  +       +F  M  K+ V W  
Sbjct: 309 ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTA 368

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MI++Y ++G   +   L   M   G R D+F   +A+ + +  + ++ GK +H   +RNG
Sbjct: 369 MITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNG 428

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            +  ++V N+L++MY +C ++  A+ IFD V +K ++SW+++I GY  ++ + EA  LF+
Sbjct: 429 MEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFT 488

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EM L+ +  + VT+  ILPA  ++ +LE  + +H Y+++ G      V  A+   Y KCG
Sbjct: 489 EMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCG 547

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            + +A  LFD  ++ +K++I+W  M++ Y  HG       L+ QM+ S + PD  +F  +
Sbjct: 548 ALLLARRLFD--RLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAI 605

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC ++GL +EG   F  M++ +  EP  +HY  MV+LL   G++ EA E +  MP +P
Sbjct: 606 LYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEP 665

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           D+ +W  LL  C++H   +LAE  AE++  +EPEN G YVLL+NIYA A +W  V K++ 
Sbjct: 666 DSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKN 725

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            +  RGL++  GCSWIE    VH F A +++HPQ   I   L
Sbjct: 726 KIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFL 767



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 198/402 (49%), Gaps = 14/402 (3%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQ------VFNSITSPNSLLYGTILKNLSKFG 110
           ++HGL + L   S      A +   + S +      VF+ +   + + + +++   +  G
Sbjct: 217 VVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNG 276

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
            Y+K + ++ +M L+       T   V+ +C+ L     G  +H   VK GF S   + +
Sbjct: 277 LYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLAN 336

Query: 171 ALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            L++ Y  C       K    M+Q+        W ++I+   + G  +K   LF+ M +E
Sbjct: 337 VLLDMYSNCSDWRSTNKIFRNMVQKNVVS----WTAMITSYTRAGLYDKVAGLFQEMGLE 392

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   D   + + L +    + L+ G+ VH  A+ +   K L+V  AL+ MY K  ++E+A
Sbjct: 393 GTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEA 452

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K++FD +  KD + WN +I  Y ++    E+  L   M+    R +  T    + + +++
Sbjct: 453 KLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASL 511

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            ++E G++MHA  LR G      V N+LIDMY +C  L  AR++FD +  K ++SW+ M+
Sbjct: 512 SSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMV 571

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            GY  H +  +A+ LF +M++ G+  D  +   IL AC + G
Sbjct: 572 AGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSG 613



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 181/372 (48%), Gaps = 26/372 (6%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y +  G      L++ L+D Y+N      + ++F ++   N + +  ++ + ++ G Y+K
Sbjct: 322 YSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDK 381

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS------GEKIHAQVVKLGFDSFDDV 168
              ++++M L      E T P +    S L  F        G+ +H   ++ G +    V
Sbjct: 382 VAGLFQEMGL------EGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAV 435

Query: 169 GDALVEFYIKCDGGFENEK----GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            +AL+E Y+KC G  E  K    G++    KD+ S WN+LI    +N  + ++F LF  M
Sbjct: 436 TNALMEMYVKC-GNMEEAKLIFDGVVS---KDMIS-WNTLIGGYSRNNLANEAFSLFTEM 490

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
            ++    ++ T+  +L +   L SLE GR +H  A+   + +D  V  AL+ MY K  +L
Sbjct: 491 LLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGAL 549

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL--FTAIAAVS 342
             A+ LFD++S+K+ + W IM++ Y   G  ++++ L   M  SG   D   F+AI    
Sbjct: 550 LLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           S S +++  W +   A    +  + ++  +  ++D+     +L  A +  DS+  +   S
Sbjct: 610 SHSGLRDEGW-RFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSS 668

Query: 403 -WSSMIKGYVTH 413
            W S+++G   H
Sbjct: 669 IWVSLLRGCRIH 680



 Score = 42.4 bits (98), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 35/193 (18%), Positives = 86/193 (44%), Gaps = 35/193 (18%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA Y +  G  ++  +++ LID Y   G L L++++F+ +++ N + +  ++     
Sbjct: 518 REMHA-YALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGM 576

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G     + +++QM +  + P   ++  ++ +CS           H+ +   G+  FD +
Sbjct: 577 HGRGRDAIALFEQMRVSGIAPDAASFSAILYACS-----------HSGLRDEGWRFFDAM 625

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
                            ++  I+ + K     +  ++ L +  G  ++++E    M +E 
Sbjct: 626 ----------------RKEHKIEPRLK----HYTCMVDLLINTGNLKEAYEFIDSMPIEP 665

Query: 229 AEFDSGTLINLLR 241
              DS   ++LLR
Sbjct: 666 ---DSSIWVSLLR 675


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/686 (32%), Positives = 381/686 (55%), Gaps = 20/686 (2%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L   C N + + Q+H++ +   G+  +   ++ L   YA    L  +++VF+    PN  
Sbjct: 10  LFQACNNGRSVSQLHSQ-VFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVH 68

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           L+ + L++  +  ++E+TL ++  M   +   P   T P  +++C+ L     G+ IH  
Sbjct: 69  LWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGF 128

Query: 157 VVK---LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
             K   +G D F  VG ALVE Y KC      + G   + F++ +      W S+++   
Sbjct: 129 AKKNDEIGSDMF--VGSALVELYSKC-----GQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181

Query: 210 QNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           QN   E++  LF +++ M+    D  TL++++ +  +L +++ G  VH + +  +F  DL
Sbjct: 182 QNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDL 241

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +  +LL++Y+K    + A  LF KM +KD + W+ MI+ Y  +    E+L L   M+  
Sbjct: 242 PLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEK 301

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
            F  +  T ++A+ + +  +N+E GK++H   +  G +   SV  +LIDMY +C   + A
Sbjct: 302 RFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA 361

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             +F  +  K VVSW +++ GY  +  + +++ +F  M  +G++ D V ++ IL A   +
Sbjct: 362 VDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           G  +    LHGY ++ G NS   V  ++   Y+KCG +  A +LF  + +  +D++ W+S
Sbjct: 422 GIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLF--KGMIVRDVVIWSS 479

Query: 509 MISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           MI+AY  HG   +  +++ QM K S VRP+ +TFL +L+AC +AGLVEEG  IF  M   
Sbjct: 480 MIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHD 539

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           Y   P  EH+  MV+LLGR G + +A +++  MP      VWG LL AC++H   E+ E 
Sbjct: 540 YQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEA 599

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A+ L  ++P +AG Y+LLSNIYA  GKW+ VA++RT +++RGLKK  G S +E+   VH
Sbjct: 600 AAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVH 659

Query: 688 EFWAADQSHPQADAIYTILGILELEI 713
            F A+D+ HP +  IY +L  LE ++
Sbjct: 660 SFLASDRFHPDSQKIYELLRKLEAQM 685



 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/440 (37%), Positives = 261/440 (59%), Gaps = 2/440 (0%)

Query: 267  DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
            D  + T    MY     ++ A ++F+ + +    +WN+MI  +   G    SLEL   M+
Sbjct: 751  DSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMM 810

Query: 327  RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
              G + D F    A+ S + + +++ GK +H +++  G    + V  +L+DMY +C D+ 
Sbjct: 811  EKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIE 870

Query: 387  CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
             AR +FD +  + +VSW+SMI GY  +  + E L  F  M+  GV  + V+I+++L AC 
Sbjct: 871  AARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACG 930

Query: 447  NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            N+GAL   ++ H Y ++ G      V TAI   Y+KCG +++A  LFDE     KD++ W
Sbjct: 931  NLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA--GKDLVCW 988

Query: 507  NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            ++MI++Y  HG   +   L+ QM ++ VRP  +TF  +L+AC ++GL+EEG++ F+ M E
Sbjct: 989  SAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTE 1048

Query: 567  SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
             +       +YA MV+LLGRAG + EA +L+++MP +PDA +WG LL AC++H+  +LAE
Sbjct: 1049 EFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAE 1108

Query: 627  LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
              A+ L  ++P +AG +VLLSNIYAA  +WN V K+R  +  RG  K  G S +E    V
Sbjct: 1109 KIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQV 1168

Query: 687  HEFWAADQSHPQADAIYTIL 706
            H+F   D+SHPQ + +Y  L
Sbjct: 1169 HKFGVGDRSHPQWEKLYAKL 1188



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 159/351 (45%), Gaps = 41/351 (11%)

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
            WN +I     +G+   S EL+  M  +G + D       L+S   L  L+ G+++H   V
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845

Query: 261  VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                  DL V+ AL+ MY+K   +E A+++FDKM+ +D V W  MIS Y  +G+  E+L 
Sbjct: 846  CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905

Query: 321  LLMCMVRSGF---RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
                M  SG    R  + + + A  ++  ++  EW    H+ V++ G ++ + V  +++D
Sbjct: 906  FFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEW---FHSYVIQTGFEFDILVATAIMD 962

Query: 378  MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            MY +C  L+ AR +FD    K +V WS+MI  Y  H    +A+ LF +M   GV    VT
Sbjct: 963  MYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVT 1022

Query: 438  IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
               +L AC + G LE  K                                M  +L  EE 
Sbjct: 1023 FTCVLSACSHSGLLEEGK--------------------------------MYFQLMTEEF 1050

Query: 498  IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
            + ++ +  +  M+    + G  S+   L   M    V PD   +  LL AC
Sbjct: 1051 VIARKLSNYACMVDLLGRAGQLSEAVDLIENMP---VEPDASIWGSLLGAC 1098



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 160/308 (51%), Gaps = 4/308 (1%)

Query: 48   LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
            L++ HA+ I  +GL  +  + +     Y +   +  +  VF  I +P S L+  +++  +
Sbjct: 736  LKKTHAK-IFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
              G +  +L +Y +M  + + P +  +PF ++SC+ L D   G+ IH  +V  G  +   
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 168  VGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V  ALV+ Y KC G  E  + +  +   +DL S W S+IS    NG + ++   F LMR 
Sbjct: 855  VDAALVDMYAKC-GDIEAARLVFDKMAVRDLVS-WTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 227  EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
             G   +  +++++L +   L +L  G   H   + + F  D+ V TA++ MYSK  SL+ 
Sbjct: 913  SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 972

Query: 287  AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            A+ LFD+ + KD V W+ MI++Y   G  +++++L   MV++G R    T    +S+ S 
Sbjct: 973  ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 1032

Query: 347  MKNIEWGK 354
               +E GK
Sbjct: 1033 SGLLEEGK 1040



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 4/291 (1%)

Query: 335  FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            +  I +     T+      K+ HA +   G  Y   +      MY     ++ A  +F+ 
Sbjct: 718  YKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFED 777

Query: 395  VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
            +       W+ MI+G+ T  + L +L L+S+M  +G++ D       L +C  +  L+  
Sbjct: 778  IPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRG 837

Query: 455  KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
            K +H + +  G ++   V+ A+   YAKCG IE A  +FD  K+  +D+++W SMIS YA
Sbjct: 838  KVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFD--KMAVRDLVSWTSMISGYA 895

Query: 515  KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
             +G  S+    +  M+ S V P+ ++ L +L AC N G + +G      + ++ G+E   
Sbjct: 896  HNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQT-GFEFDI 954

Query: 575  EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                +++++  + G +D AR L  +   K D   W  ++++  +H     A
Sbjct: 955  LVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIHGHGRKA 1004


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 359/663 (54%), Gaps = 79/663 (11%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDS---YANLGLLSLSQQVFNSITSPNSLLYGTI 102
           Q L+ IHA+ +I  GLH      S LI+      +   L  +  VF +I  PN L++ T+
Sbjct: 4   QSLRMIHAQ-MIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
            +  +   +    L +Y  M    + P   T+PF+++SC+    F  G++IH  V+KLG 
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           D         ++ Y+                         SLIS+ VQNG+ E + ++F 
Sbjct: 123 D---------LDLYVH-----------------------TSLISMYVQNGRLEDAHKVFD 150

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
                                                      +D+   TAL+  Y+   
Sbjct: 151 ---------------------------------------ESPHRDVVSYTALIKGYASRG 171

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +E+A+ +FD++  KD V WN MIS Y ++G  KE+LEL   M+++  R D  T +  VS
Sbjct: 172 YIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 231

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +   +IE G+Q+H+ +  +G    + + N+LID+Y +C +L  A  +F+ +  K V+S
Sbjct: 232 ACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVIS 291

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+++I GY   +   EAL LF EM   G   + VT+++ILPAC ++GA++  +++H Y  
Sbjct: 292 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 351

Query: 463 KL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           K   G+ + SS+ T++   YAKCG IE A ++F+   I  K + +WN+MI  +A HG   
Sbjct: 352 KRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFN--SILHKSLSSWNAMIFGFAMHGRAD 409

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
             F ++++M+++ + PD ITF+GLL+AC ++G+++ GR IF+ M + Y   P  EHY  M
Sbjct: 410 ASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCM 469

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           ++LLG +G   EA E++  M  +PD  +W  LL ACKMH   EL E  A+ LI +EPEN 
Sbjct: 470 IDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENP 529

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G+YVLLSNIYA AG+WN VA  R  L D+G+KK PGCS IEI  +VHEF   D+ HP+  
Sbjct: 530 GSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 589

Query: 701 AIY 703
            IY
Sbjct: 590 EIY 592


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/655 (33%), Positives = 368/655 (56%), Gaps = 6/655 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   I + G   +++  + L+D Y+    L  +  +F  +   NS+ +  ++    + 
Sbjct: 191 QVHCLAIQM-GFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRN 249

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
             + + L +YK M  + M  ++ T+    RSC+ L  F  G ++HA  +K  F   + VG
Sbjct: 250 DRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVG 309

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKD-LKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            A ++ Y KCD   +  K  +   F +  +   N+LI    +  +  ++ E+F+ ++   
Sbjct: 310 TATLDMYAKCDRMVDARK--VFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSY 367

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +FD  +L   L +   +K    G  +H +AV      ++ V   +L MY+K  +L +A 
Sbjct: 368 LDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEAC 427

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           ++FD M  KD V WN +I+A+ Q+   +E+L L + M+RS    D +T  + V + +  K
Sbjct: 428 LIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKK 487

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            + +G ++H  V+++G      V +++IDMYC+C  L  A KI + ++ +T VSW+S+I 
Sbjct: 488 ALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIIS 547

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G+ +  Q   AL  FS M   GV  D  T   +L  C N+  +E  K +HG  +KL L+S
Sbjct: 548 GFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHS 607

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              + + I   Y+KCG ++ +  +F  EK   +D +TW++MI AYA HG      KL+ +
Sbjct: 608 DVYIASTIVDMYSKCGNMQDSRIMF--EKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEE 665

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M+  +V+P+   F+ +L AC + G V++G   F+EM+  YG +P  EHY+ MV+LLGR+G
Sbjct: 666 MQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSG 725

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            ++EA EL++ MPF+ D  +W  LL  C++    E+AE  A  L+ ++P+++  YVLLSN
Sbjct: 726 QVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSN 785

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           +YA AG W  VAK+R+F+++  LKK PGCSWI++   VH F   D++HP+++ IY
Sbjct: 786 VYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIY 840



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 161/612 (26%), Positives = 301/612 (49%), Gaps = 17/612 (2%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
            +++I  + +I  YA +G +  +Q +F+S+   + + + ++L    + G + K++ ++ +
Sbjct: 101 QRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTK 160

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC-- 179
           M L  +     T+  V+++C+ + D+  G ++H   +++GFDS    G ALV+ Y  C  
Sbjct: 161 MRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKK 220

Query: 180 -DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            D  F     M +R        W+++I+  V+N +  +  +L+K+M  EG      T  +
Sbjct: 221 LDHAFNIFCEMPERN----SVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFAS 276

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
             RS   L + ELG  +H  A+ ++F  D  V TA L MY+K   + DA+ +F+   +  
Sbjct: 277 AFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPT 336

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
           R   N +I  Y +     E+LE+   + +S    D  +   A+++ S +K    G Q+H 
Sbjct: 337 RQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHG 396

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             ++ G D+ + V N+++DMY +C  L  A  IFD ++ K  VSW+++I  +  ++   E
Sbjct: 397 LAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEE 456

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            L LF  M    +E D  T  +++ AC    AL +   +HG  +K G+     V +AI  
Sbjct: 457 TLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIID 516

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCG +  A ++   E+++ +  ++WNS+IS ++           +++M Q  V PD 
Sbjct: 517 MYCKCGMLVEAEKI--HERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDN 574

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVNLLGRAGHMDEARELV 597
            T+  +L  C N   VE G+ I  ++ +   +  S  + AS +V++  + G+M ++R + 
Sbjct: 575 FTYATVLDICANLATVELGKQIHGQILKLQLH--SDVYIASTIVDMYSKCGNMQDSRIMF 632

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG-NYVLLSNIYAAAGKW 656
           +  P K D   W  ++ A   H    L E   +    M+ +N   N+ +  ++  A    
Sbjct: 633 EKAP-KRDYVTWSAMICAYAYHG---LGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHM 688

Query: 657 NGVAKMRTFLRD 668
             V K   + R+
Sbjct: 689 GFVDKGLHYFRE 700



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 208/454 (45%), Gaps = 40/454 (8%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK-------------- 280
           T  ++ +    LK++  G+  H    V+ F   + V+  LL  Y K              
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 281 -----------------LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
                            + ++E A+ LFD M ++D V WN M+S Y Q+GF ++S+E+  
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M     + D  T    + + + +++   G Q+H   ++ G D  V    +L+DMY  C+
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L+ A  IF  +  +  V WS++I GYV +D+  E L+L+  M  EG+ V   T  +   
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C  + A E    LH Y++K      + V TA    YAKC  +  A ++F+     ++  
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQ- 338

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
            + N++I  YA+     +  +++  +++S +  D I+  G LTAC       EG I    
Sbjct: 339 -SHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEG-IQLHG 396

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM--HSE 621
           +    G + +     +++++  + G + EA  +  DM  K DA  W  +++A +   H E
Sbjct: 397 LAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAAHEQNEHVE 455

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
             LA   +    +MEP+   +Y   S + A AGK
Sbjct: 456 ETLALFVSMLRSTMEPD---DYTFGSVVKACAGK 486


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 244/709 (34%), Positives = 397/709 (55%), Gaps = 26/709 (3%)

Query: 8   ACSLQSGHV--KFLRFPANQTRPHMTATHSFSLLNLCENPQHL-QQIHARYIILHGLHQN 64
           ACSL S     K+L    N+ R        F+ + L     HL +Q+HA  +++ G  Q+
Sbjct: 21  ACSLYSATAAPKYLDGVENEKREI-----DFNRIFLYCTKVHLAKQLHA-LLVVSGKTQS 74

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
           + LS+ LI+ YA LG +  ++  F+ I + +   + +++   ++ G +   +  + +   
Sbjct: 75  IFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLS 134

Query: 125 QSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            S   ++  T+P VIR+C  L D   G K+H  V+KLGF+    +  + + FY +   GF
Sbjct: 135 TSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYIAASFIHFYSRF--GF 189

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            +   +    F ++  R    WN++IS    NGK  ++ E+F  MR +    DS T+ +L
Sbjct: 190 VS---LACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSL 246

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L   V+L  +  G ++H  A+      DL V  AL++MY+K   L  A+ +F++M  +D 
Sbjct: 247 LPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDI 306

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +++A+ Q+  P  +L +   M   G   DL T ++  S  + + N    + +H  
Sbjct: 307 VSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGF 366

Query: 360 VLRNGSD-YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
           V R     + +++ N++IDMY +   ++ ARK+F+ +  K V+SW+S+I GY  +  + E
Sbjct: 367 VTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANE 426

Query: 419 ALRLFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           A+ ++S M+   G   +  T ++IL A   +GAL+     HG  +K  L     V+T + 
Sbjct: 427 AIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLV 486

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y KCG +  A  LF E  +  +  ++WN++IS +  HG   +  KL+ +M+   V+PD
Sbjct: 487 DMYGKCGKLADALSLFYE--VPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPD 544

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITF+ LL+AC ++GLV+EG+  F+ M+E+YG  PS +HY  MV+L GRAGH+++A   V
Sbjct: 545 HITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFV 604

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           K+MP +PD  VWG LL AC++H   EL    ++ L+ +E EN G YVLLSNIYA  G W 
Sbjct: 605 KNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWE 664

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           GV ++R+  RDRGLKKTPG S IE+ K +  F+  +Q+HP+ + IY+ L
Sbjct: 665 GVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSEL 713


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/734 (32%), Positives = 388/734 (52%), Gaps = 78/734 (10%)

Query: 49  QQIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           QQIHAR I+ +G    +N  + + L+  YA      ++ ++F+ +   N   +  I+   
Sbjct: 99  QQIHAR-ILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQ 157

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            + G  E  LL + +M    ++P     P V+++C  L     G+ +H  V+K+GF +  
Sbjct: 158 CRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACV 217

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V  +LV+ Y KC G  E+ + +     +     WNS+I   VQNG ++++ ++F  MR+
Sbjct: 218 FVSSSLVDMYGKC-GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRV 276

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG E    T+ + L ++  L +L  G+  H +A+++    D  + +++++ YSK+  +ED
Sbjct: 277 EGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIED 336

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+++F +M +KD V WN++IS+Y Q     ++L +   M     R D  T  + +S+ + 
Sbjct: 337 AELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAV 396

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI--------------- 391
             NI+ GK+ H   +R   +  V V NS+IDMY +CE ++ ARK+               
Sbjct: 397 TSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTL 456

Query: 392 ---------------------FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
                                FDSV    V+SW+S+I G++ + Q  EA  +FS+M+  G
Sbjct: 457 LAAYAQVGLSGEALKLFYQMQFDSVP-PNVISWNSVILGFLRNGQVNEAKDMFSQMQSLG 515

Query: 431 VEVDFVT-----------------------------------IINILPACVNIGALEHVK 455
            + + +T                                   I ++L AC +I +L + +
Sbjct: 516 FQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGR 575

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +HG+  +        V T++   YAKCG I+ A ++F    + SK++  +N+MISAYA 
Sbjct: 576 AIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVF--HMMSSKELPIYNAMISAYAL 633

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   +   L+  +++  + PD ITF  +L+AC +AGLV EG  +F +M   +   P  E
Sbjct: 634 HGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIME 693

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY  +V+LL R G++DEA  L+  MPF+PDA + G LL+AC+ H E EL E  ++ L  +
Sbjct: 694 HYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKL 753

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP N+GNYV LSN YAAAG+W  V+ MR  ++ RGL+K PGCSWI+ G  ++ F A D S
Sbjct: 754 EPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGS 813

Query: 696 HPQADAIYTILGIL 709
           HP+ + IY +L +L
Sbjct: 814 HPKTEEIYAMLAML 827



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 265/523 (50%), Gaps = 17/523 (3%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG- 161
           + +L K G  ++++ +  +M  +      + Y  +++ C       +G++IHA+++K G 
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 110

Query: 162 -FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
            F   + V   LV FY KCD  F     +  R F  L+ R    W +++ L  + G SE 
Sbjct: 111 FFAKNEYVETKLVVFYAKCD--FPE---VAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 165

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +   F  M+  G   D+  L N+L++   L+ + LG+ VH   +   F   + V+++L+ 
Sbjct: 166 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVD 225

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K   LEDA+ +FD M +K+ V WN MI  Y Q+G  +E++++   M   G      T
Sbjct: 226 MYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVT 285

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + +S+ + +  +  GKQ HA  + N  D    + +S+I+ Y +   +  A  +F  + 
Sbjct: 286 VASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRML 345

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K VV+W+ +I  YV H Q  +AL +   M+ E +  D VT+ +IL A      ++  K 
Sbjct: 346 EKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE 405

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            H Y ++  L S   V  +I   YAKC  I+ A ++FD      +D++ WN++++AYA+ 
Sbjct: 406 GHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTT--ERDLVLWNTLLAAYAQV 463

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +  KL+ QM+   V P++I++  ++   +  G V E + +F +M +S G++P+   
Sbjct: 464 GLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQM-QSLGFQPNLIT 522

Query: 577 YASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
           + ++++ L ++G   EA    + M     +P       +L AC
Sbjct: 523 WTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLAC 565


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/659 (31%), Positives = 371/659 (56%), Gaps = 12/659 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H  +I+  GL     + + L+  Y+  G L  ++Q+F+ +   + + Y +++  L++
Sbjct: 233 EQLHG-FIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQ 291

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ L ++++M L  M P   T   ++ +C+ +     G+++H+ V+K+G  S   +
Sbjct: 292 RGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLII 351

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
             +L++ Y+KC   F+ E       F   ++     WN ++    Q G   +S+ +F  M
Sbjct: 352 EGSLLDLYVKC---FDIETA--HEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQM 406

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           ++EG   +  T  ++LR+   L +L+LG  +H   + S F  ++ V + L+ MY+K   L
Sbjct: 407 QIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGEL 466

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           + A+ +  ++ ++D V W  MI+ Y Q     E+L+L   M   G R+D     +A+S+ 
Sbjct: 467 DTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC 526

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + ++ +  G+Q+HA    +G    +S+ N+L+ +Y  C     A   F+ +  K  +SW+
Sbjct: 527 AGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWN 586

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I G+       EAL++FS+M   GVE +  T  + + A  N   ++  K +H   +K 
Sbjct: 587 ALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKT 646

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G +S +  +  +   Y+KCG IE A   F E  +  K++++WN+MI+ Y++HG  S+   
Sbjct: 647 GYDSETEASNVLITLYSKCGSIEDAKREFFE--MPEKNVVSWNAMITGYSQHGYGSEAVS 704

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+ +MKQ  + P+ +TF+G+L+AC + GLV EG   F+ M + +G  P  EHY  +V+LL
Sbjct: 705 LFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLL 764

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRA  +  ARE +++MP +PDA +W  LLSAC +H   E+ E  A  L+ +EPE++  YV
Sbjct: 765 GRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYV 824

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           LLSN+YA +GKW+   + R  ++DRG+KK PG SWIE+   +H F+  D+ HP A+ IY
Sbjct: 825 LLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIY 883



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/568 (26%), Positives = 283/568 (49%), Gaps = 7/568 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HAR I   G     +L S LID Y   G +  + ++F+ I S N   +  ++  L  
Sbjct: 30  KKLHAR-IFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLA 88

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC-LLDFISGEKIHAQVVKLGFDSFDD 167
                + L ++  M  +++ P E T+  V+R+CS     F   E+IHA+++  GF S   
Sbjct: 89  KKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V + L++ Y K +G  +  K + +R F      W ++IS   QNG+ +++  LF  M   
Sbjct: 149 VCNPLIDLYSK-NGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKS 207

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
                     ++L +  +++  +LG  +H   V      +  V  AL+++YS+  +L  A
Sbjct: 208 AVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAA 267

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +F KM  +DR+ +N +IS   Q GF   +L+L   M     + D  T  + +S+ +++
Sbjct: 268 EQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASV 327

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
                GKQ+H+ V++ G    + +  SL+D+Y +C D+  A + F + +T+ VV W+ M+
Sbjct: 328 GAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVML 387

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
             Y       E+  +F +M++EG+  +  T  +IL  C ++GAL+  + +H   +K G  
Sbjct: 388 VAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQ 447

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               V + +   YAK G ++ A  +   +++  +D+++W +MI+ Y +H  +++  KL+ 
Sbjct: 448 FNVYVCSVLIDMYAKHGELDTARGIL--QRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M+   +R D I F   ++AC     + +G+ I  +   S GY        ++V+L  R 
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYIS-GYSEDLSIGNALVSLYARC 564

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSA 615
           G   +A    + +  K D   W  L+S 
Sbjct: 565 GRAQDAYLAFEKIDAK-DNISWNALISG 591



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 265/528 (50%), Gaps = 17/528 (3%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY ++   C      +  +K+HA++ K GFD  D +G  L++ Y+   G  +N   +   
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYL-AHGEVDNAIKLFDD 70

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS-LEL 251
                 S WN +IS  +    + +   LF LM  E    D  T  ++LR+    K+  ++
Sbjct: 71  IPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQV 130

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
              +H   +   F     V   L+ +YSK   ++ AK++F+++  KD V W  MIS   Q
Sbjct: 131 TEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQ 190

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G   E++ L   M +S      +   + +S+ + ++  + G+Q+H  +++ G   +  V
Sbjct: 191 NGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFV 250

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N+L+ +Y    +L  A +IF  +  +  +S++S+I G      S  AL+LF +M+L+ +
Sbjct: 251 CNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCM 310

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D VT+ ++L AC ++GA    K LH Y +K+G++S   +  ++   Y KC  IE A E
Sbjct: 311 KPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHE 370

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
            F     ++++++ WN M+ AY + G+ S+ + ++ QM+   + P+  T+  +L  C + 
Sbjct: 371 YF--LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSL 428

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G ++ G  I  ++ +S G++ +    + ++++  + G +D AR +++ +  + D   W  
Sbjct: 429 GALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTA 486

Query: 612 LLSACKMHSETELAELTAEKL-ISMEPENAG----NYVLLSNIYAAAG 654
           +++    H      +L AE L +  E EN G    N    S I A AG
Sbjct: 487 MIAGYTQH------DLFAEALKLFQEMENQGIRSDNIGFSSAISACAG 528



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 159/336 (47%), Gaps = 3/336 (0%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G   +  T + L        SL   + +H     S F  +  + + L+ +Y     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +++A  LFD +   +   WN +IS         + L L   M+      D  T  + + +
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 344 ISTMKN-IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
            S  K   +  +Q+HA ++ +G      V N LID+Y +   ++ A+ +F+ +  K  VS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W +MI G   + +  EA+ LF +M    V        ++L AC  I   +  + LHG+ +
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K GL+S + V  A+   Y++ G +  A ++F   K+  +D I++NS+IS  A+ G   + 
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFS--KMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
            +L+ +M+   ++PD +T   LL+AC + G   +G+
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGK 334



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 36/326 (11%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M   G RA++ T +          ++   K++HA + ++G D +  + + LID+Y    +
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           ++ A K+FD + +  V  W+ +I G +    + + L LFS M  E V  D  T  ++L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 445 CVNIGA-LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           C    A  +  + +H   +  G  S   V   +   Y+K G +++A  +F  E++  KD 
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVF--ERLFLKDS 178

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC--------------- 548
           ++W +MIS  +++G   +   L+ QM +S V P    F  +L+AC               
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 549 -VNAGLVEE--------------GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            V  GL  E              G +I  E   S  +   +  Y S+++ L + G  D A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 594 RELVKDMPF---KPDARVWGPLLSAC 616
            +L + M     KPD      LLSAC
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSAC 324


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/706 (32%), Positives = 390/706 (55%), Gaps = 21/706 (2%)

Query: 25  QTRPHMTATHSFSLLNLCENPQHL---QQIHARYI-ILHGLHQNLILS-----SNLIDSY 75
           Q R  ++  +   LL  C   + L   + IH   +  LH  H+  + +       L+D Y
Sbjct: 2   QLRTRLSLEYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLY 61

Query: 76  ANLGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
                L +++ VF+ +     N +L+  +++  +  G YE+ + +Y +M    + P   T
Sbjct: 62  IACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFT 121

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           +PFV+++CS L +   G +IH  + +L  +S   V  ALV+FY KC G  ++ K +  + 
Sbjct: 122 FPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKC-GCLDDAKEVFDKM 180

Query: 194 FKDLKSRWNSLIS-LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
            K     WNS+IS  ++  G  ++   L   M+ + +  +S T++ +L +  ++ SL  G
Sbjct: 181 HKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSP-NSSTIVGVLPAVAQVNSLRHG 239

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQ 311
           + +H   V   F  D+ V T +L +Y K   ++ A+ +FD M   K+ V W+ M+ AY  
Sbjct: 240 KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVV 299

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSI---STMKNIEWGKQMHANVLRNGSDYQ 368
             F +E+LEL   ++       + +A+   + I   + + ++  G  +H   +++G    
Sbjct: 300 CDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLD 359

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           + V N+L+ MY +C  +N A + F+ +  +  VS++++I GYV +  S E LR+F EM+L
Sbjct: 360 LMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQL 419

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G+  +  T+ ++LPAC ++  L +    H Y++  G  + + +  A+   YAKCG I+ 
Sbjct: 420 SGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDT 479

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A ++FD  ++  + I++WN+MI AY  HG   +   L+  M+   ++PD +TF+ L++AC
Sbjct: 480 ARKVFD--RMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISAC 537

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            ++GLV EG+  F  M + +G  P  EHYA MV+LL RAG   E    ++ MP +PD RV
Sbjct: 538 SHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRV 597

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           WG LLSAC+++   EL E  ++K+  + PE+ GN+VLLSN+Y+A G+W+  A++R   ++
Sbjct: 598 WGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKE 657

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAAD-QSHPQADAIYTILGILELEI 713
           +G +K+PGCSWIEI  +VH F     +SHPQ   I   L  L +E+
Sbjct: 658 QGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEM 703


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/664 (32%), Positives = 381/664 (57%), Gaps = 14/664 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           ++  HA+ II + L  +  +++ L+ +Y++L  L  ++ VF+    P  LL   +L    
Sbjct: 48  VKSTHAQ-IITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYL 106

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G Y +TL ++  M  +++     +  F +++C+  LD+  G +I +  V+ G +    
Sbjct: 107 QSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRF 166

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           VG +++ F +K       + G  QR F  + ++    WNS+I   VQ G  + +F+LF  
Sbjct: 167 VGSSMISFLVKF-----GKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFE 221

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G +    T+ +L+++   + +L+LG+ +H   +      D+ V T+ + MYSK+  
Sbjct: 222 MHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E A+ +F KM  ++ V WN MIS   ++G   ES +L   +VRS    DL T ++ +  
Sbjct: 282 IESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQG 341

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            S   ++  GK +H   +R+  +  + +  +++D+Y +C  L  A  +F+ +K + V++W
Sbjct: 342 CSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITW 400

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++M+ G   +  + +ALRLF++M+ EG+  + VT ++++ +C ++G+L+  + +HG+  +
Sbjct: 401 TAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR 460

Query: 464 LGLNSLSSVN-TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           LG  +   VN TA+   YAKCG I +A  +F    I SKD++ WNSMI+ Y  HG   Q 
Sbjct: 461 LGF-AFDIVNMTALVDMYAKCGKINLAERIFSHGSI-SKDVVLWNSMITGYGMHGHGYQA 518

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
             +Y +M +  ++P+  TFL LL+AC ++ LVE+G  +F  M+  +   P ++HYA +V+
Sbjct: 519 VGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVD 578

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LL RAG  +EA+ L++ MPF+P   V   LLS C+ H    L   T++KL++++  N G 
Sbjct: 579 LLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGI 638

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           Y++LSNIYA A +W+ V  +R  +R+RGLKKTPG S +E G  VH F+A D SHP  + I
Sbjct: 639 YIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEI 698

Query: 703 YTIL 706
           Y  L
Sbjct: 699 YHFL 702


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/668 (32%), Positives = 368/668 (55%), Gaps = 5/668 (0%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y+ +   H +L L + L+  +   G L  +  VF  +   N   +  ++   +K G +++
Sbjct: 131 YVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDE 190

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L +Y +M    + P   T+P V+R+C  + + + G +IH  V++ GF+S  DV +AL+ 
Sbjct: 191 ALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALIT 250

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+KC G     + +  +     +  WN++IS   +NG   +   LF +M     + D  
Sbjct: 251 MYVKC-GDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLM 309

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+ +++ +   L    LGR +H   + ++F +D S++ +L+ MYS +  +E+A+ +F + 
Sbjct: 310 TMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRT 369

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
             +D V W  MIS Y     P+++LE    M   G   D  T    +S+ S + N++ G 
Sbjct: 370 ECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGM 429

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
            +H    + G      V NSLIDMY +C+ ++ A +IF S   K +VSW+S+I G   ++
Sbjct: 430 NLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINN 489

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           +  EAL  F EM +  ++ + VT++ +L AC  IGAL   K +H ++++ G++    +  
Sbjct: 490 RCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN 548

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           AI   Y +CG +E A + F    +D  ++ +WN +++ YA+ G  +   +L+ +M +S+V
Sbjct: 549 AILDMYVRCGRMEYAWKQF--FSVD-HEVTSWNILLTGYAERGKGAHATELFQRMVESNV 605

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            P+ +TF+ +L AC  +G+V EG   F  MK  Y   P+ +HYA +V+LLGR+G ++EA 
Sbjct: 606 SPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAY 665

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           E ++ MP KPD  VWG LL++C++H   EL EL AE +   +  + G Y+LLSN+YA  G
Sbjct: 666 EFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNG 725

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIM 714
           KW+ VA++R  +R  GL   PGCSW+E+   VH F ++D  HPQ   I  +L     ++ 
Sbjct: 726 KWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMK 785

Query: 715 EGRRESSE 722
           E   E  E
Sbjct: 786 EAGVEGPE 793


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/675 (33%), Positives = 371/675 (54%), Gaps = 13/675 (1%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLI-----LSSNLIDSYANLGLLSL 83
           H T T SF  L    N    + +HA  ++L G  Q         +S L++ Y N G L  
Sbjct: 28  HFTVT-SFHRLKSPPNLHEARTLHALLLVL-GFFQPTCPHSSSFASQLVNVYVNFGSLQH 85

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           +   F ++     + +  IL+ L   G + K +  Y  M    + P   TYP V+++CS 
Sbjct: 86  AFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSS 145

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWN 202
           L     G  +H + +     +   V  A+++ + KC G  E+ + M +    +DL S W 
Sbjct: 146 LHALQLGRWVH-ETMHGKTKANVYVQCAVIDMFAKC-GSVEDARRMFEEMPDRDLAS-WT 202

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +LI   + NG+  ++  LF+ MR EG   DS  + ++L +   L++++LG  +   AV S
Sbjct: 203 ALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRS 262

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F  DL V+ A++ MY K     +A  +F  M   D V W+ +I+ Y Q+   +ES +L 
Sbjct: 263 GFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLY 322

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
           + M+  G   +   A + + ++  ++ ++ GK+MH  VL+ G    V V ++LI MY  C
Sbjct: 323 IGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANC 382

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +  A  IF+    K ++ W+SMI GY        A   F  +       +F+T+++IL
Sbjct: 383 GSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSIL 442

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           P C  +GAL   K +HGY  K GL    SV  ++   Y+KCG +E+  ++F +  +  ++
Sbjct: 443 PICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMV--RN 500

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           + T+N+MISA   HG   +    Y QMK+   RP+ +TF+ LL+AC +AGL++ G +++ 
Sbjct: 501 VTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYN 560

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M   YG EP+ EHY+ MV+L+GRAG +D A + +  MP  PDA V+G LL AC++H++ 
Sbjct: 561 SMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKV 620

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           EL EL AE+++ ++ +++G+YVLLSN+YA+  +W  ++K+R+ ++D+GL+K PG SWI++
Sbjct: 621 ELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQV 680

Query: 683 GKLVHEFWAADQSHP 697
           G  ++ F A    HP
Sbjct: 681 GHCIYVFHATSAFHP 695


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/702 (31%), Positives = 390/702 (55%), Gaps = 18/702 (2%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGL--------HQNLILSSNLIDSY 75
           ++T  H+       LL  C + + L+Q       +HG         H +L+L +++  +Y
Sbjct: 60  DKTDSHLQIQPLVDLLRDCVDARFLKQAKT----VHGFLLKSKFSNHHSLVLLNHVAHAY 115

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           +    +  + ++F+ ++  N+  +  ++  L++ G +      + +M  Q ++P +  Y 
Sbjct: 116 SKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYS 175

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
            +++ C  L     G  +HAQ+V  GF S   V  AL+  Y K     E+   +     +
Sbjct: 176 GILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQE-IEDSYKVFNTMTE 234

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN++I+    N     +F+LF  M  EG   D+ T I + ++   L+ +   + V
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSG 313
              A+      +  V TAL+ M SK  SL++A+ +F+   ++ +    WN MIS Y +SG
Sbjct: 295 SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVH 372
           F +++LEL   M ++    D +T  +  ++I+ +K +  GK++HA  +++G +   VS+ 
Sbjct: 355 FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSIS 414

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N++ + Y +C  L   RK+F+ ++ + ++SW+S++  Y    +  +A+ +FS M+ EG+ 
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIA 474

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            +  T  ++L +C N+  LE+ + +HG   K+GL+    + +A+   YAKCGC+  A ++
Sbjct: 475 PNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKV 534

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F+  +I + D ++W ++I+ +A+HG      +L+ +M Q  V P+ +TFL +L AC + G
Sbjct: 535 FN--RISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGG 592

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LVEEG   FK MK++YG  P  EHYA +V+LL R GH+++A E +  MP +P+  VW  L
Sbjct: 593 LVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTL 652

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L AC++H   EL EL A+K++S + EN+  YVLLSN Y  +G +     +R  ++++G+K
Sbjct: 653 LGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVK 712

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIM 714
           K PGCSWI +   +H+F+A DQ HP+ D IY  L  L+L+++
Sbjct: 713 KEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLI 754


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/734 (32%), Positives = 388/734 (52%), Gaps = 78/734 (10%)

Query: 49   QQIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
            QQIHAR I+ +G    +N  + + L+  YA      ++ ++F+ +   N   +  I+   
Sbjct: 1194 QQIHAR-ILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQ 1252

Query: 107  SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
             + G  E  LL + +M    ++P     P V+++C  L     G+ +H  V+K+GF +  
Sbjct: 1253 CRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACV 1312

Query: 167  DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
             V  +LV+ Y KC G  E+ + +     +     WNS+I   VQNG ++++ ++F  MR+
Sbjct: 1313 FVSSSLVDMYGKC-GVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRV 1371

Query: 227  EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            EG E    T+ + L ++  L +L  G+  H +A+++    D  + +++++ YSK+  +ED
Sbjct: 1372 EGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIED 1431

Query: 287  AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            A+++F +M +KD V WN++IS+Y Q     ++L +   M     R D  T  + +S+ + 
Sbjct: 1432 AELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAV 1491

Query: 347  MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI--------------- 391
              NI+ GK+ H   +R   +  V V NS+IDMY +CE ++ ARK+               
Sbjct: 1492 TSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTL 1551

Query: 392  ---------------------FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
                                 FDSV    V+SW+S+I G++ + Q  EA  +FS+M+  G
Sbjct: 1552 LAAYAQVGLSGEALKLFYQMQFDSVP-PNVISWNSVILGFLRNGQVNEAKDMFSQMQSLG 1610

Query: 431  VEVDFVT-----------------------------------IINILPACVNIGALEHVK 455
             + + +T                                   I ++L AC +I +L + +
Sbjct: 1611 FQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGR 1670

Query: 456  YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
             +HG+  +        V T++   YAKCG I+ A ++F    + SK++  +N+MISAYA 
Sbjct: 1671 AIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVF--HMMSSKELPIYNAMISAYAL 1728

Query: 516  HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
            HG   +   L+  +++  + PD ITF  +L+AC +AGLV EG  +F +M   +   P  E
Sbjct: 1729 HGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIME 1788

Query: 576  HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
            HY  +V+LL R G++DEA  L+  MPF+PDA + G LL+AC+ H E EL E  ++ L  +
Sbjct: 1789 HYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKL 1848

Query: 636  EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
            EP N+GNYV LSN YAAAG+W  V+ MR  ++ RGL+K PGCSWI+ G  ++ F A D S
Sbjct: 1849 EPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGS 1908

Query: 696  HPQADAIYTILGIL 709
            HP+ + IY +L +L
Sbjct: 1909 HPKTEEIYAMLAML 1922



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 265/523 (50%), Gaps = 17/523 (3%)

Query: 103  LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG- 161
            + +L K G  ++++ +  +M  +      + Y  +++ C       +G++IHA+++K G 
Sbjct: 1146 ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 1205

Query: 162  -FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
             F   + V   LV FY KCD  F     +  R F  L+ R    W +++ L  + G SE 
Sbjct: 1206 FFAKNEYVETKLVVFYAKCD--FPE---VAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 1260

Query: 217  SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
            +   F  M+  G   D+  L N+L++   L+ + LG+ VH   +   F   + V+++L+ 
Sbjct: 1261 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVD 1320

Query: 277  MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
            MY K   LEDA+ +FD M +K+ V WN MI  Y Q+G  +E++++   M   G      T
Sbjct: 1321 MYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVT 1380

Query: 337  AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
              + +S+ + +  +  GKQ HA  + N  D    + +S+I+ Y +   +  A  +F  + 
Sbjct: 1381 VASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRML 1440

Query: 397  TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
             K VV+W+ +I  YV H Q  +AL +   M+ E +  D VT+ +IL A      ++  K 
Sbjct: 1441 EKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE 1500

Query: 457  LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
             H Y ++  L S   V  +I   YAKC  I+ A ++FD      +D++ WN++++AYA+ 
Sbjct: 1501 GHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTT--ERDLVLWNTLLAAYAQV 1558

Query: 517  GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
            G   +  KL+ QM+   V P++I++  ++   +  G V E + +F +M +S G++P+   
Sbjct: 1559 GLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQM-QSLGFQPNLIT 1617

Query: 577  YASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
            + ++++ L ++G   EA    + M     +P       +L AC
Sbjct: 1618 WTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLAC 1660


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/702 (31%), Positives = 390/702 (55%), Gaps = 18/702 (2%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGL--------HQNLILSSNLIDSY 75
           ++T  H+       LL  C + + L+Q       +HG         H +L+L +++  +Y
Sbjct: 60  DKTDSHLQIQPLVDLLRDCVDARFLKQAKT----VHGFLLKSKFSNHHSLVLLNHVAHAY 115

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           +    +  + ++F+ ++  N+  +  ++  L++ G +      + +M  Q ++P +  Y 
Sbjct: 116 SKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYS 175

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
            +++ C  L     G  +HAQ+V  GF S   V  AL+  Y K     E+   +     +
Sbjct: 176 GILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQE-IEDSYKVFNTMTE 234

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN++I+    N     +F+LF  M  EG   D+ T I + ++   L+ +   + V
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSG 313
              A+      +  V TAL+ M SK  SL++A+ +F+   ++ +    WN MIS Y +SG
Sbjct: 295 SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVH 372
           F +++LEL   M ++    D +T  +  ++I+ +K +  GK++HA  +++G +   VS+ 
Sbjct: 355 FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSIS 414

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N++ + Y +C  L   RK+F+ ++ + ++SW+S++  Y    +  +A+ +FS M+ EG+ 
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIA 474

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            +  T  ++L +C N+  LE+ + +HG   K+GL+    + +A+   YAKCGC+  A ++
Sbjct: 475 PNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKV 534

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F+  +I + D ++W ++I+ +A+HG      +L+ +M Q  V P+ +TFL +L AC + G
Sbjct: 535 FN--RISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGG 592

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LVEEG   FK MK++YG  P  EHYA +V+LL R GH+++A E +  MP +P+  VW  L
Sbjct: 593 LVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTL 652

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L AC++H   EL EL A+K++S + EN+  YVLLSN Y  +G +     +R  ++++G+K
Sbjct: 653 LGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVK 712

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIM 714
           K PGCSWI +   +H+F+A DQ HP+ D IY  L  L+L+++
Sbjct: 713 KEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLI 754


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/689 (32%), Positives = 371/689 (53%), Gaps = 17/689 (2%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLS 84
           T P + +T    L  L  +  +L Q       +H + Q  +  SN  +      G L  +
Sbjct: 15  TAPAVASTECIDLQVLERSNDNLSQN------IHFISQTDLPESNKQLKELVKTGHLGNA 68

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI----RS 140
           +++F+ ++  + + + T++       +  + LL++K M ++S    +   PF++    ++
Sbjct: 69  RRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRID---PFILSLAHKA 125

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C    D   GE +H   VK G  +   VG AL++ Y K    FE  +   +   +++ S 
Sbjct: 126 CGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS- 184

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I+  V+ G ++++   F  M     E+DS T    L++  +  +L  GR +H  A+
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F     V   L +MY+K   LE    LF+KMS +D V W  +I+   Q G  + +++
Sbjct: 245 KKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQ 304

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
             + M  S    + +T  A +S  + +  IEWG+Q+HA +L  G    +SV NS++ MY 
Sbjct: 305 AFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYA 364

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  L  +  IF  +  + +VSWS++I GY       EA  L S M++EG +     + +
Sbjct: 365 KCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALAS 424

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC N+  LEH K LH Y + +GL   + V +A+   Y KCG IE A  +FD  + D 
Sbjct: 425 VLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEND- 483

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            DI++W +MI+ YA+HG   +   L+ ++ +  +RPD +TF+G+L+AC +AGLV+ G   
Sbjct: 484 -DIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHY 542

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M + Y   PS+EHY  M++LL RAG + +A  +++ MPF  D  VW  LL AC++H 
Sbjct: 543 FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           + E    TAE+++ +EP  AG ++ L+NIYA+ GKW   A +R  ++ +G+ K PG SWI
Sbjct: 603 DVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWI 662

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGIL 709
           ++  LV  F A D+SHPQ + IY +L +L
Sbjct: 663 KVKDLVFAFVAGDRSHPQGEDIYNMLDLL 691


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/689 (32%), Positives = 371/689 (53%), Gaps = 17/689 (2%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLS 84
           T P + +T    L  L  +  +L Q       +H + Q  +  SN  +      G L  +
Sbjct: 15  TAPAVASTECIDLQVLERSNDNLSQN------IHFISQTDLPESNKQLKELVKTGHLGNA 68

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI----RS 140
           +++F+ ++  + + + T++       +  + LL++K M ++S    +   PF++    ++
Sbjct: 69  RRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRID---PFILSLAHKA 125

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C    D   GE +H   VK G  +   VG AL++ Y K    FE  +   +   +++ S 
Sbjct: 126 CGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS- 184

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I+  V+ G ++++   F  M     E+DS T    L++  +  +L  GR +H  A+
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F     V   L +MY+K   LE    LF+KMS +D V W  +I+   Q G  + +++
Sbjct: 245 KKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQ 304

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
             + M  S    + +T  A +S  + +  IEWG+Q+HA +L  G    +SV NS++ MY 
Sbjct: 305 AFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYA 364

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  L  +  IF  +  + +VSWS++I GY       EA  L S M++EG +     + +
Sbjct: 365 KCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALAS 424

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC N+  LEH K LH Y + +GL   + V +A+   Y KCG IE A  +FD  + D 
Sbjct: 425 VLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEND- 483

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            DI++W +MI+ YA+HG   +   L+ ++ +  +RPD +TF+G+L+AC +AGLV+ G   
Sbjct: 484 -DIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRY 542

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M + Y   PS+EHY  M++LL RAG + +A  +++ MPF  D  VW  LL AC++H 
Sbjct: 543 FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           + E    TAE+++ +EP  AG ++ L+NIYA+ GKW   A +R  ++ +G+ K PG SWI
Sbjct: 603 DVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWI 662

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGIL 709
           ++  LV  F A D+SHPQ + IY +L +L
Sbjct: 663 KVKDLVFAFVAGDRSHPQGEDIYNMLDLL 691


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/677 (33%), Positives = 384/677 (56%), Gaps = 33/677 (4%)

Query: 61  LHQNLILSSNLIDSYANLGLLSL---------SQQVFNSITSPNSLLYGTILKNLSKFGE 111
           LH  +I   N +D +AN  LL+          + ++F+ +   N++ + T+++  S+   
Sbjct: 66  LHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLR 125

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE------KIHAQVVKLGFDSF 165
           + + + ++ ++  +      +  PFV  +   LL  +S E       +HA V KLGFDS 
Sbjct: 126 FSEAIGLFSRLQGE----GHELNPFVFSTVLKLL--VSAEWAKLGFSVHACVYKLGFDSD 179

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             VG AL++ Y  C       +     ++KD+ S W  +++  V+N   E+S +LF  MR
Sbjct: 180 AFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS-WTGMVACYVENECFEESLKLFSRMR 238

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           + G + ++ T  ++L++ V L+   +G+ VH  A  + + ++L V   L+ +Y K   ++
Sbjct: 239 IVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVD 298

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DA  +F++M   D + W+ MI+ Y QS   +E++E+   M R     + FT  + + + +
Sbjct: 299 DALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++ +++ G Q+H +V++ G D  V V N+L+DMY +C  +  + ++F      T VSW++
Sbjct: 359 SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNT 418

Query: 406 MIKGYVTHDQSLEALRLFSEM---KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           +I GYV      +AL LF +M   +++G EV + ++   L AC  I ALE    +H  S+
Sbjct: 419 VIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSV---LRACAGIAALEPGSQIHSLSV 475

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K   +  + V  A+   YAKCG I+ A  +FD   +   D ++WN+MIS Y+ HG + + 
Sbjct: 476 KTIYDKNTVVGNALIDMYAKCGNIKDARLVFD--MLREHDQVSWNAMISGYSVHGLYGEA 533

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            K +  M +++ +PD +TF+G+L+AC NAGL++ G+  FK M E Y  EP  EHY  MV 
Sbjct: 534 LKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVW 593

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGR+GH+D+A +LV ++PF+P   VW  LLSAC +H++ EL  ++A++++ +EPE+   
Sbjct: 594 LLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEAT 653

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           +VLLSNIYA A +W  VA +RT ++ +G++K PG SWIE    VH F   D SHP    I
Sbjct: 654 HVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLI 713

Query: 703 YTILGILELEIMEGRRE 719
               G+LE   M+ R E
Sbjct: 714 N---GMLEWLNMKARNE 727



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 225/460 (48%), Gaps = 3/460 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +  + + LID Y+  G    ++QVF++I   + + +  ++    +   +E++L ++
Sbjct: 175 GFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLF 234

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M +    P   T+  V+++C  L  F  G+ +H    K  +     VG  L++ YIK 
Sbjct: 235 SRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIK- 293

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G  ++   + +   KD    W+ +I+   Q+ +SE++ E+F  MR      +  TL +L
Sbjct: 294 SGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASL 353

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L++   L  L+LG  +HC  V      ++ V+ AL+ MY+K   +E++  LF +  +   
Sbjct: 354 LQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTD 413

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +I  Y Q+G  +++L L   M+    +    T  + + + + +  +E G Q+H+ 
Sbjct: 414 VSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSL 473

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            ++   D    V N+LIDMY +C ++  AR +FD ++    VSW++MI GY  H    EA
Sbjct: 474 SVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEA 533

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFI 478
           L+ F  M     + D VT + IL AC N G L+  + Y      +  +   +   T +  
Sbjct: 534 LKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVW 593

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              + G ++ A +L  E   +   ++ W +++SA   H D
Sbjct: 594 LLGRSGHLDKAAKLVHEIPFEPS-VMVWRALLSACVIHND 632



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 251/512 (49%), Gaps = 11/512 (2%)

Query: 129 PAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFE 184
           P  +TY +  +++SC    D  +G+ +H +++K G   D F +  + L+ FY+K D   +
Sbjct: 40  PEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFAN--NILLNFYVKYDSLPD 97

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
             K   +   ++  S + +LI    Q  +  ++  LF  ++ EG E +      +L+  V
Sbjct: 98  AAKLFDEMPDRNTVS-FVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLV 156

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
             +  +LG  VH       F  D  V TAL+  YS     E A+ +FD +  KD V W  
Sbjct: 157 SAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTG 216

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           M++ Y ++   +ESL+L   M   GF+ + FT  + + +   ++    GK +H    +  
Sbjct: 217 MVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTS 276

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              ++ V   LID+Y +  D++ A ++F+ +    V+ WS MI  Y   +QS EA+ +F 
Sbjct: 277 YLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFC 336

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M+   V  +  T+ ++L AC ++  L+    +H + +K+GL+    V+ A+   YAKCG
Sbjct: 337 RMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCG 396

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +E + +LF E   +  D ++WN++I  Y + G+  +   L+  M +  V+   +T+  +
Sbjct: 397 RMENSLQLFSESP-NCTD-VSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSV 454

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC     +E G  I   +     Y+ +     +++++  + G++ +AR LV DM  + 
Sbjct: 455 LRACAGIAALEPGSQI-HSLSVKTIYDKNTVVGNALIDMYAKCGNIKDAR-LVFDMLREH 512

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISME 636
           D   W  ++S   +H     A  T E ++  E
Sbjct: 513 DQVSWNAMISGYSVHGLYGEALKTFESMLETE 544



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL  C +   LQ   QIH  +++  GL  N+ +S+ L+D YA  G +  S Q+F+   +
Sbjct: 352 SLLQACASLVDLQLGNQIHC-HVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPN 410

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
              + + T++    + G  EK L+++K M    +   E TY  V+R+C+ +     G +I
Sbjct: 411 CTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQI 470

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H+  VK  +D    VG+AL++ Y KC G  ++ + +     +  +  WN++IS    +G 
Sbjct: 471 HSLSVKTIYDKNTVVGNALIDMYAKC-GNIKDARLVFDMLREHDQVSWNAMISGYSVHGL 529

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
             ++ + F+ M     + D  T + +L +      L+ G+
Sbjct: 530 YGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQ 569


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/670 (33%), Positives = 370/670 (55%), Gaps = 19/670 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           ++++H+ + +  GL  +L + + L+  YA  G +  ++ VF+ +T  +   +  ++  L+
Sbjct: 339 VKEVHS-HAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLA 397

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC----SCLLDFISGEKIHAQVVKLGFD 163
           + G  ++   ++ QM      P   TY  ++ +     +  L+++  + +H    + GF 
Sbjct: 398 QHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWV--KVVHKHAEEAGFI 455

Query: 164 SFDDVGDALVEFYIKCDGGFENEK----GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
           S   +G+AL+  Y KC G  ++ +    GM  R   D+ S WN+++    QNG   ++F 
Sbjct: 456 SDLRIGNALIHMYAKC-GSIDDARLVFDGMCDR---DVIS-WNAMMGGLAQNGCGHEAFT 510

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           +F  M+ EG   DS T ++LL +     +LE    VH  AV +    D  V +A + MY 
Sbjct: 511 VFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYI 570

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           +  S++DA++LFDK+S +    WN MI    Q    +E+L L + M R GF  D  T I 
Sbjct: 571 RCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFIN 630

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            +S+    + +EW K++H++    G    + V N+L+  Y +C ++  A+++FD +  + 
Sbjct: 631 ILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERN 689

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           V +W+ MI G   H    +A   F +M  EG+  D  T ++IL AC + GALE VK +H 
Sbjct: 690 VTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHN 749

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           +++  GL S   V  A+   YAKCG I+ A  +FD+  +  +D+ +W  MI   A+HG  
Sbjct: 750 HAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDD--MVERDVFSWTVMIGGLAQHGRG 807

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +    + +MK    +P+  +++ +LTAC +AGLV+EGR  F  M + YG EP+ EHY  
Sbjct: 808 LEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTC 867

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           MV+LLGRAG ++EA   + +MP +PD   WG LL AC  +   E+AE  A++ + ++P++
Sbjct: 868 MVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKS 927

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
           A  YVLLSNIYAA GKW     +R+ ++ +G++K PG SWIE+   +H F   D SHP++
Sbjct: 928 ASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPES 987

Query: 700 DAIYTILGIL 709
             IY  L  L
Sbjct: 988 KEIYAQLNDL 997



 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 171/596 (28%), Positives = 312/596 (52%), Gaps = 15/596 (2%)

Query: 32  ATHSFSLLNL---CENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           A  SFS +N+   C   + +   +Q+H   II  G+ QNL +++ L+  Y   G L  ++
Sbjct: 115 AIDSFSYVNILQRCLKQEDILLAKQVHV-CIIKSGMEQNLYVANKLLRVYIRCGRLQCAR 173

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           QVF+ +   N  ++ T++   +++G  E  + VY +M  +   P E TY  ++++C C +
Sbjct: 174 QVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPV 233

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
           +   G+KIHA +++ GF S   V  ALV  Y+KC G  E+ + +  +  +     W  +I
Sbjct: 234 NLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKC-GSIEDAQLIFDKMVERNVISWTVMI 292

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
                 G+ +++F LF  M+ EG   +S T +++L +     +LE  + VH  AV +   
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            DL V  AL+ MY+K  S++DA+++FD M+++D   W +MI    Q G  +E+  L + M
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 326 VRSGFRADLFT--AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            R+G   +L T  +I   S+I++   +EW K +H +    G    + + N+LI MY +C 
Sbjct: 413 QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            ++ AR +FD +  + V+SW++M+ G   +    EA  +F +M+ EG+  D  T +++L 
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
              +  ALE V  +H ++++ GL S   V +A    Y +CG I+ A  LFD  K+  + +
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFD--KLSVRHV 590

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
            TWN+MI   A+     +   L+ QM++    PD  TF+ +L+A V+   +E  + +   
Sbjct: 591 TTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSH 650

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
             ++   +    +  ++V+   + G++  A+++  DM  + +   W  ++     H
Sbjct: 651 ATDAGLVDLRVGN--ALVHTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQH 703



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 154/604 (25%), Positives = 301/604 (49%), Gaps = 37/604 (6%)

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           AN  +   ++Q  N IT+ +++    +LK           + V + +A+ S      +Y 
Sbjct: 82  ANASVDGAAEQTHNVITAKDAV---AMLK-----------IRVQQGIAIDSF-----SYV 122

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
            +++ C    D +  +++H  ++K G +    V + L+  YI+C G  +  + +  +  K
Sbjct: 123 NILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRC-GRLQCARQVFDKLLK 181

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                W ++I    + G +E +  ++  MR E  + +  T +++L++     +L+ G+ +
Sbjct: 182 KNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKI 241

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   + S F  D+ V TAL++MY K  S+EDA+++FDKM +++ + W +MI      G  
Sbjct: 242 HAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRG 301

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+  L + M R GF  + +T ++ +++ ++   +EW K++H++ +  G    + V N+L
Sbjct: 302 QEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNAL 361

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           + MY +   ++ AR +FD +  + + SW+ MI G   H +  EA  LF +M+  G   + 
Sbjct: 362 VHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNL 421

Query: 436 VTIINIL--PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
            T ++IL   A  +  ALE VK +H ++ + G  S   +  A+   YAKCG I+ A  +F
Sbjct: 422 TTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVF 481

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   +  +D+I+WN+M+   A++G   + F ++ QM+Q  + PD  T+L LL    +   
Sbjct: 482 D--GMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDA 539

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP----DARVW 609
           +E    + K   E+ G        ++ +++  R G +D+AR L   +  +     +A + 
Sbjct: 540 LEWVNEVHKHAVET-GLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIG 598

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNY--VLLSNIYAAAGKWNGVAKMRTFLR 667
           G     C   + +   ++  E  I     +A  +  +L +N+   A +W  V ++ +   
Sbjct: 599 GAAQQRCGREALSLFLQMQREGFIP----DATTFINILSANVDEEALEW--VKEVHSHAT 652

Query: 668 DRGL 671
           D GL
Sbjct: 653 DAGL 656


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/606 (34%), Positives = 344/606 (56%), Gaps = 5/606 (0%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   +K G+Y      ++++      P   T PFVIR+C  L +   G  IH  V K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFEL 220
            D    V  ALV+ Y+KC    E+ + +  + + +DL + W  +I    + GK+ +S  L
Sbjct: 61  LDLDHFVCAALVDMYVKCRE-IEDARFLFDKMQERDLVT-WTVMIGGYAECGKANESLVL 118

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F+ MR EG   D   ++ ++ +  +L ++   RI+        F  D+ + TA++ MY+K
Sbjct: 119 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 178

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              +E A+ +FD+M +K+ + W+ MI+AY   G  +++L+L   M+ SG   D  T  + 
Sbjct: 179 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASL 238

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + S +KN++ G+ +H  V + G D    V  +L+DMY +C ++  AR +FD +  + +
Sbjct: 239 LYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDL 298

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+W+ MI GY     + E+L LF +M+ EGV  D V ++ ++ AC  +GA+   + +  Y
Sbjct: 299 VTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 358

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
             +        + TA+   +AKCGC+E A E+FD  +++ K++I+W++MI+AY  HG   
Sbjct: 359 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFD--RMEEKNVISWSAMIAAYGYHGQGR 416

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +   L+  M +S + P+ IT + LL AC +AGLVEEG   F  M E Y      +HY  +
Sbjct: 417 KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCV 476

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGRAG +DEA +L++ M  + D  +WG  L AC+ H +  LAE  A  L+ ++P+N 
Sbjct: 477 VDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNP 536

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G+Y+LLSNIYA AG+W  VAK R  +  R LKK PG +WIE+    H+F   D +HP++ 
Sbjct: 537 GHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSK 596

Query: 701 AIYTIL 706
            IY +L
Sbjct: 597 EIYEML 602



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 178/373 (47%), Gaps = 11/373 (2%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           H  +I   YI       ++IL + +ID YA  G +  ++++F+ +   N + +  ++   
Sbjct: 148 HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY 207

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
              G+  K L +++ M    M P + T   ++ +CS L +   G  IH  V K G D   
Sbjct: 208 GYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDH 267

Query: 167 DVGDALVEFYIKC----DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
            V  ALV+ Y KC    D  F  +K M +R   DL + W  +I    + G + +S  LF 
Sbjct: 268 FVCAALVDMYGKCREIEDARFLFDK-MPER---DLVT-WTVMIGGYAECGNANESLVLFD 322

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR EG   D   ++ ++ +  +L ++   R +        F  D+ + TA++ M++K  
Sbjct: 323 KMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCG 382

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +E A+ +FD+M +K+ + W+ MI+AY   G  +++L+L   M+RSG   +  T ++ + 
Sbjct: 383 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLY 442

Query: 343 SISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTV 400
           + S    +E G +  + +  + S    V  +  ++D+      L+ A K+ +S+   K  
Sbjct: 443 ACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDE 502

Query: 401 VSWSSMIKGYVTH 413
             W + +    TH
Sbjct: 503 GLWGAFLGACRTH 515


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 366/667 (54%), Gaps = 32/667 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   ++  G      + + L+  Y+  G LS ++Q+F+ ++  + + Y +++  L++
Sbjct: 271 KQLHG-LVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQ 329

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L ++K+M L    P   T   ++ +C+ +    +G++ H+  +K G  S   V
Sbjct: 330 QGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L++ Y+KC                D+K+     +    Q     KSF++F  M++EG
Sbjct: 390 EGSLLDLYVKC---------------SDIKTAHEFFLCYG-QLDNLNKSFQIFTQMQIEG 433

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  T  ++L++   L + +LG  +H   + + F  ++ V++ L+ MY+K   L+ A 
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F ++ + D V W  MI+ Y Q     E+L L   M   G ++D     +A+S+ + ++
Sbjct: 494 KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQ 553

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            ++ G+Q+HA    +G    +S+ N+L+ +Y  C  +  A   FD +  K  VSW+S++ 
Sbjct: 554 ALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVS 613

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G+       EAL +F++M   G+E++  T  + + A  NI  +   K +HG   K G +S
Sbjct: 614 GFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDS 673

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            + V+ A+   YAKCG I               D I+WNSMI+ Y++HG   +  KL+  
Sbjct: 674 ETEVSNALITLYAKCGTI---------------DDISWNSMITGYSQHGCGFEALKLFED 718

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MKQ DV P+ +TF+G+L+AC + GLV+EG   F+ M E++   P  EHYA +V+LLGR+G
Sbjct: 719 MKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSG 778

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +  A+  V++MP +PDA VW  LLSAC +H   ++ E  A  L+ +EP+++  YVL+SN
Sbjct: 779 LLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSN 838

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YA +GKW+   + R  ++DRG+KK PG SW+E+   VH F+A DQ+HP+AD IY  L  
Sbjct: 839 MYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRG 898

Query: 709 LELEIME 715
           L+    E
Sbjct: 899 LDFRAAE 905



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 152/545 (27%), Positives = 276/545 (50%), Gaps = 34/545 (6%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           ++QIHA+  I  G   +  + + LID Y   G LS +++VF ++ + +S+ +  ++  LS
Sbjct: 183 VEQIHAK-TITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLS 241

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G  E+ +L++ Q+              V+ +C+ +  F  G+++H  V+K GF S   
Sbjct: 242 QNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETY 287

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V +ALV  Y +  G   + + +     +  +  +NSLIS   Q G   ++  LFK M ++
Sbjct: 288 VCNALVTLYSR-SGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLD 346

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
             + D  T+ +LL +   + +L  G+  H  A+ +    D+ V  +LL +Y K + ++ A
Sbjct: 347 CQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTA 406

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
              F                 Y Q     +S ++   M   G   + FT  + + + +T+
Sbjct: 407 HEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTL 451

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
              + G+Q+H  VL+ G  + V V + LIDMY +   L+ A KIF  +K   VVSW++MI
Sbjct: 452 GATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMI 511

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY  HD+  EAL LF EM+ +G++ D +   + + AC  I AL+  + +H  S   G +
Sbjct: 512 AGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYS 571

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
              S+  A+   YA+CG +  A   FD+  I +KD ++WNS++S +A+ G + +   ++ 
Sbjct: 572 DDLSIGNALVSLYARCGKVREAYAAFDQ--IYAKDNVSWNSLVSGFAQSGYFEEALNIFA 629

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           QM ++ +  +  TF   ++A  N   V  G+ I   ++++ GY+   E   +++ L  + 
Sbjct: 630 QMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKT-GYDSETEVSNALITLYAKC 688

Query: 588 GHMDE 592
           G +D+
Sbjct: 689 GTIDD 693



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 213/459 (46%), Gaps = 39/459 (8%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS-TVELKSLELGRIVHC 257
           S WN + +  +      +   LF+ M  +  EFD      +LR  +    S      +H 
Sbjct: 129 SCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHA 188

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
             + S F     +   L+ +Y K   L  AK +F+ +  +D V W  MIS   Q+G+ +E
Sbjct: 189 KTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEE 248

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           ++ LL C +              +S+ + ++  E+GKQ+H  VL+ G   +  V N+L+ 
Sbjct: 249 AM-LLFCQI-------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVT 294

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           +Y    +L+ A +IF  +  +  VS++S+I G         AL LF +M L+  + D VT
Sbjct: 295 LYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVT 354

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + ++L AC ++GAL + K  H Y++K G+ S   V  ++   Y KC  I+ A E F    
Sbjct: 355 VASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---- 410

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
                          Y +  + ++ F+++TQM+   + P+  T+  +L  C   G  + G
Sbjct: 411 -------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLG 457

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
             I  ++ ++ G++ +    + ++++  + G +D A ++ + +  + D   W  +++   
Sbjct: 458 EQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYT 515

Query: 618 MHSE-TELAELTAE-KLISMEPENAGNYVLLSNIYAAAG 654
            H + TE   L  E +   ++ +N G     S I A AG
Sbjct: 516 QHDKFTEALNLFKEMQDQGIKSDNIG---FASAISACAG 551



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+  Y     L  A  +FD+M  +    WN + + +           L   M+      D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 334 --LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
             +F  +    S + + +  + +Q+HA  + +G +    + N LID+Y +   L+ A+K+
Sbjct: 163 ERIFAVVLRGCSGNAV-SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+++K +  VSW +MI G   +    EA+ LF ++              +L AC  +   
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFF 267

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E  K LHG  +K G +S + V  A+   Y++ G +  A ++F    +  +D +++NS+IS
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIF--HCMSQRDRVSYNSLIS 325

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             A+ G  ++   L+ +M     +PD +T   LL+AC + G +  G+
Sbjct: 326 GLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGK 372



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 50/276 (18%)

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LID Y    DLNCA  +FD +  +++  W+ +   ++          LF  M  + VE D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 435 FVTIINILPACV-NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
                 +L  C  N  +   V+ +H  ++  G  S + +   +   Y K G +  A ++F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E + ++D ++W +MIS  +++G   +   L+ Q+              +L+AC     
Sbjct: 223 --ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEF 266

Query: 554 VEEGR----IIFKEMKESYGY--------------------------EPSQEHYASMVNL 583
            E G+    ++ K+   S  Y                          +  +  Y S+++ 
Sbjct: 267 FEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISG 326

Query: 584 LGRAGHMDEARELVKDMPF---KPDARVWGPLLSAC 616
           L + G+++ A  L K M     KPD      LLSAC
Sbjct: 327 LAQQGYINRALALFKKMNLDCQKPDCVTVASLLSAC 362


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/664 (33%), Positives = 376/664 (56%), Gaps = 4/664 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH   + + G   +++  S L+D YA    L  S Q F+S+   N + +  I+    + 
Sbjct: 195 QIHGLAVKM-GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQN 253

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            +    L ++K+M    +  ++ T+  V RSC+ L     G ++H   +K  F +   +G
Sbjct: 254 DDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIG 313

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            A ++ Y+KC+   + +K        +L+S +N++I    ++ K  ++  +F+L++  G 
Sbjct: 314 TATLDMYMKCNNLSDAQKLFNSLPNHNLQS-YNAIIVGYARSDKGIEALGMFRLLQKSGL 372

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             D  +L    R+   +K    G  VH +++ S    ++ V  A+L MY K  +L +A +
Sbjct: 373 GLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACL 432

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F++M  +D V WN +I+A+ Q+G  +++L L + M++SG   D FT  + + + +  + 
Sbjct: 433 VFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQA 492

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  G ++H  ++++       V  +LIDMY +C  +  A K+ D +  +TVVSW+++I G
Sbjct: 493 LNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 552

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +    QS EA + FS+M   GV+ D  T   IL  C N+  +E  K +H   +K  L S 
Sbjct: 553 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 612

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           + +++ +   Y+KCG ++    +F  EK  ++D +TWN+M+  YA+HG   +  K++  M
Sbjct: 613 AYISSTLVDMYSKCGNMQDFQLIF--EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM 670

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +  +V+P+  TFL +L AC + GLVE+G   F  M  +YG +P  EHY+ +V+++GR+G 
Sbjct: 671 QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQ 730

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + +A EL++ MPF+ DA +W  LLS CK+H   E+AE  A  ++ +EPE++  YVLLSNI
Sbjct: 731 VSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNI 790

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA AG WN V K+R  +R  GLKK PGCSWIEI   VH F   D++HP++  IY  L +L
Sbjct: 791 YANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVL 850

Query: 710 ELEI 713
             E+
Sbjct: 851 TDEM 854



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 162/599 (27%), Positives = 295/599 (49%), Gaps = 28/599 (4%)

Query: 55  YIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           + +  G+ Q   +S N ++  YA  G + ++Q++F+++   + + + +++      G++ 
Sbjct: 97  FKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHR 156

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           K + V+ QM          T+  V++SCS L D   G +IH   VK+GFD     G AL+
Sbjct: 157 KVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALL 216

Query: 174 EFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
           + Y KC   D   +    M ++ +      W+++I+  VQN       ELFK M+  G  
Sbjct: 217 DMYAKCKKLDCSIQFFHSMPEKNW----VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVG 272

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
               T  ++ RS   L +L LG  +H  A+ +DF  D+ + TA L MY K  +L DA+ L
Sbjct: 273 VSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKL 332

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F+ + + +   +N +I  Y +S    E+L +   + +SG   D  +   A  + + +K  
Sbjct: 333 FNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGD 392

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
             G Q+H   +++     + V N+++DMY +C  L  A  +F+ + ++  VSW+++I  +
Sbjct: 393 LEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAH 452

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK--LGLNS 468
             +    + L LF  M   G+E D  T  ++L AC    AL     +H   +K  LGL+S
Sbjct: 453 EQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDS 512

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V  A+   Y+KCG +E A +L D  ++  + +++WN++IS ++      +  K +++
Sbjct: 513 F--VGIALIDMYSKCGMMEKAEKLHD--RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSK 568

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGR-----IIFKEMKESYGYEPSQEHYASMVNL 583
           M +  V PD  T+  +L  C N   VE G+     II KE+ +S  Y  S     ++V++
Sbjct: 569 MLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKEL-QSDAYISS-----TLVDM 622

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAELTAEKLISMEPENA 640
             + G+M + + + +  P + D   W  ++     H   E  L      +L +++P +A
Sbjct: 623 YSKCGNMQDFQLIFEKAPNR-DFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHA 680



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 155/564 (27%), Positives = 273/564 (48%), Gaps = 48/564 (8%)

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           KTL +    + Q+    + T+  + + CS       G++ HA+++   F     V + L+
Sbjct: 25  KTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLI 84

Query: 174 EFYIKC----------DG--------------GF--ENEKGMIQRKFKDLKSR----WNS 203
           + YIKC          DG              G+    + G+ Q+ F  +  R    WNS
Sbjct: 85  QMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNS 144

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           LIS  + NG   K  ++F  M   G  FD  T   +L+S   L+    G  +H +AV   
Sbjct: 145 LISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMG 204

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D+   +ALL MY+K   L+ +   F  M +K+ V W+ +I+   Q+   +  LEL  
Sbjct: 205 FDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFK 264

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M ++G      T  +   S + +  +  G Q+H + L+      V +  + +DMY +C 
Sbjct: 265 EMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCN 324

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           +L+ A+K+F+S+    + S++++I GY   D+ +EAL +F  ++  G+ +D V++     
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFR 384

Query: 444 ACVNI-GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           AC  I G LE ++ +HG SMK    S   V  AI   Y KCG +  A  +F+E  + S+D
Sbjct: 385 ACAVIKGDLEGLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE--MVSRD 441

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-----VNAGLVEEG 557
            ++WN++I+A+ ++G+  +   L+  M QS + PD  T+  +L AC     +N G+    
Sbjct: 442 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 501

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           RII    K   G +       +++++  + G M++A +L  D   +     W  ++S   
Sbjct: 502 RII----KSRLGLDSFVG--IALIDMYSKCGMMEKAEKL-HDRLAEQTVVSWNAIISGFS 554

Query: 618 MHSETELAELTAEKLISM--EPEN 639
           +  ++E A+ T  K++ M  +P+N
Sbjct: 555 LQKQSEEAQKTFSKMLEMGVDPDN 578


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 341/600 (56%), Gaps = 4/600 (0%)

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L  +  M+     P   T+  +++ C+   D  +G  +HAQ+   G DS      AL  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDS 233
            Y KC    +  +   +   +D +  WN+L++   +NG +  + E+  ++   EG   DS
Sbjct: 103 MYAKCRRPADARRVFDRMPVRD-RVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            TL+++L +    ++L   R  H  A+ S   + ++V TA+L  Y K   +  A+++FD 
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  K+ V WN MI  Y Q+G  +E+L L   MV  G      + +AA+ +   +  ++ G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            ++H  ++R G D  VSV N+LI MY +C+ ++ A  +FD +  +T VSW++MI G   +
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
             S +A+RLF+ M+LE V+ D  T+++++PA  +I      +++HGYS++L L+    V 
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL 401

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           TA+   YAKCG + +A  LF+  +   + +ITWN+MI  Y  HG      +L+ +MK   
Sbjct: 402 TALIDMYAKCGRVNIARILFNSAR--ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIG 459

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + P+  TFL +L+AC +AGLV+EGR  F  MKE YG EP  EHY +MV+LLGRAG +DEA
Sbjct: 460 IVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEA 519

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
              ++ MP  P   V+G +L ACK+H   ELAE +A+K+  + P+    +VLL+NIYA A
Sbjct: 520 WAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANA 579

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             W  VA++RT +   GL+KTPG S I++   +H F++   +H QA  IY+ L  L  EI
Sbjct: 580 SMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEI 639



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 158/310 (50%), Gaps = 10/310 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           + HA + I  GL + + +++ ++D+Y   G +  ++ VF+ + + NS+ +  ++   ++ 
Sbjct: 182 EAHA-FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G+  + L ++ +M  + +   + +    +++C  L     G ++H  +V++G DS   V 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
           +AL+  Y KC         +    F +L  R    WN++I    QNG SE +  LF  M+
Sbjct: 301 NALITMYSKC-----KRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           +E  + DS TL++++ +  ++      R +H  ++     +D+ V TAL+ MY+K   + 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A++LF+   ++  + WN MI  Y   GF K ++EL   M   G   +  T ++ +S+ S
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 346 TMKNIEWGKQ 355
               ++ G++
Sbjct: 476 HAGLVDEGRE 485


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/656 (33%), Positives = 365/656 (55%), Gaps = 7/656 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G + +  + S+LI  YA  G +  ++++F+ + + + +L+  +L    K GE    + V+
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 120 KQMALQSMYPAEDTYPFVIRSCS--CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           + M      P   T+  V+  C+   L +F  G ++H  V+  GF     V +ALV  Y 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEF--GNQLHGLVISCGFHFDPLVANALVAMYS 119

Query: 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           K  G   +   +           WN +I+  VQNG  +++  LF  M   G   DS T  
Sbjct: 120 KF-GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFA 178

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           + L S  E  SL+ G+ +H   +      D+ + +AL+ +Y K   +  A  +F + ++ 
Sbjct: 179 SFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNV 238

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D VV   +IS Y  +G   ++LE+   ++      +  T  + + + + +  +  GK++H
Sbjct: 239 DIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELH 298

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           AN+L++G D +  V ++++DMY +C  L+ A +IF  +  K  V W+++I     + +  
Sbjct: 299 ANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQ 358

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EA+ LF +M  EG+  D V+I   L AC N+ AL H K +H + +K   +S     +A+ 
Sbjct: 359 EAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALI 418

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y KCG + +A  +FD  +   K+ ++WNS+I+AY  HG       L+ +M +  ++PD
Sbjct: 419 DMYGKCGNLSVARCVFDMMR--EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPD 476

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            +TFL +L+AC +AG V++G   F+ M E YG     EHYA +V+L GRAG ++EA E +
Sbjct: 477 HVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETI 536

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           K+MPF PD  VWG LL AC++H   ELAE+ +  L+ ++PEN+G YVLLSN++A AG+W 
Sbjct: 537 KNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWG 596

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            V K+R+ ++ RG++K PG SWIE+ K  H F AAD SHP++  IY++L  L LE+
Sbjct: 597 SVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNLLLEL 652



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/504 (26%), Positives = 258/504 (51%), Gaps = 21/504 (4%)

Query: 25  QTRPHMTATHSFSLLNLCEN---PQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           QT+P+ + T + S+L++C +    +   Q+H   +I  G H + ++++ L+  Y+  G L
Sbjct: 68  QTKPN-SITFA-SVLSICASEALSEFGNQLHG-LVISCGFHFDPLVANALVAMYSKFGQL 124

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           S + ++FN++   N + +  ++    + G  ++  L++ +M    + P   T+   + S 
Sbjct: 125 SDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSV 184

Query: 142 SCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +       G++IH  +++ G   D F  +  AL++ Y KC      + GM  + FK   +
Sbjct: 185 TESASLKQGKEIHGYILRHGIALDVF--LKSALIDIYFKC-----RDVGMACKIFKQSTN 237

Query: 200 ----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                  ++IS  V NG +  + E+F+ +  E    ++ TL ++L +   L +L LG+ +
Sbjct: 238 VDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKEL 297

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +     +   V +A++ MY+K   L+ A  +F +M +KD V WN +I+   Q+G P
Sbjct: 298 HANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKP 357

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+++L   M R G   D  +  AA+S+ + +  +  GK +H+ +++   D +V   ++L
Sbjct: 358 QEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESAL 417

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           IDMY +C +L+ AR +FD ++ K  VSW+S+I  Y +H     +L LF +M  +G++ D 
Sbjct: 418 IDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDH 477

Query: 436 VTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
           VT + IL AC + G ++  ++Y    + + G+ +       I   + + G +  A E   
Sbjct: 478 VTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIK 537

Query: 495 EEKIDSKDIITWNSMISAYAKHGD 518
                  D + W +++ A   HG+
Sbjct: 538 NMPFSPDDGV-WGTLLGACRVHGN 560



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 4/171 (2%)

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
           +G N    V +++   YA+ GCIE A  LFD  K+ +KD + WN M++ + K G+ +   
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFD--KMPNKDCVLWNVMLNGFVKCGEPNSAV 58

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           K++  M+    +P+ ITF  +L+ C +  L E G  +   +  S G+        ++V +
Sbjct: 59  KVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQL-HGLVISCGFHFDPLVANALVAM 117

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
             + G + +A +L   MP   +   W  +++    +   + A L   ++IS
Sbjct: 118 YSKFGQLSDALKLFNTMP-DTNVVTWNGMIAGFVQNGFMDEASLLFSEMIS 167


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 341/600 (56%), Gaps = 4/600 (0%)

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L  +  M+     P   T+  +++ C+   D  +G  +HAQ+   G DS      AL  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDS 233
            Y KC    +  +   +   +D +  WN+L++   +NG +  + E+  ++   EG   DS
Sbjct: 103 MYAKCRRPADARRVFDRMPVRD-RVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            TL+++L +    ++L   R  H  A+ S   + ++V TA+L  Y K   +  A+++FD 
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  K+ V WN MI  Y Q+G  +E+L L   MV  G      + +AA+ +   +  ++ G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            ++H  ++R G D  VSV N+LI MY +C+ ++ A  +FD +  +T VSW++MI G   +
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
             S +A+RLF+ M+LE V+ D  T+++++PA  +I      +++HGYS++L L+    V 
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL 401

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           TA+   YAKCG + +A  LF+  +   + +ITWN+MI  Y  HG      +L+ +MK   
Sbjct: 402 TALIDMYAKCGRVNIARILFNSAR--ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIG 459

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + P+  TFL +L+AC +AGLV+EGR  F  MKE YG EP  EHY +MV+LLGRAG +DEA
Sbjct: 460 IVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEA 519

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
              ++ MP  P   V+G +L ACK+H   ELAE +A+K+  + P+    +VLL+NIYA A
Sbjct: 520 WAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANA 579

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             W  VA++RT +   GL+KTPG S I++   +H F++   +H QA  IY+ L  L  EI
Sbjct: 580 SMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEI 639



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 158/310 (50%), Gaps = 10/310 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           + HA + I  GL + + +++ ++D+Y   G +  ++ VF+ + + NS+ +  ++   ++ 
Sbjct: 182 EAHA-FAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G+  + L ++ +M  + +   + +    +++C  L     G ++H  +V++G DS   V 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
           +AL+  Y KC         +    F +L  R    WN++I    QNG SE +  LF  M+
Sbjct: 301 NALITMYSKC-----KRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           +E  + DS TL++++ +  ++      R +H  ++     +D+ V TAL+ MY+K   + 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A++LF+   ++  + WN MI  Y   GF K ++EL   M   G   +  T ++ +S+ S
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 346 TMKNIEWGKQ 355
               ++ G++
Sbjct: 476 HAGLVDEGRE 485


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/674 (34%), Positives = 366/674 (54%), Gaps = 79/674 (11%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDS---YANLGLLSLSQQVFNSI 91
           S SLL+ C+  Q L+ IHA+ +I  GLH      S L++      +   L  +  VF++I
Sbjct: 5   SLSLLHXCKTLQSLRIIHAQ-MIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
             P  L++ T+ +  +   +    L +Y  M    + P   T+PF+++SC+    F  G+
Sbjct: 64  QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQ 123

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H QV+K GFD         ++ YI                         SLIS+ VQN
Sbjct: 124 QLHGQVLKFGFD---------LDLYIH-----------------------TSLISMYVQN 151

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G            R+E A+             V  KS                 +D+   
Sbjct: 152 G------------RLEDAQ------------KVXDKSSH---------------RDVVSY 172

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TAL++ Y+    +E A  +FD++  KD V WN  IS Y ++G  KE+LEL   M+++  R
Sbjct: 173 TALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T +  +S+ +   +IE G+Q+H+ +  +G    + + N+LID+Y +C +L  A  +
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGL 292

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K V+SW+++I GY   +   EAL LF +M   G + + VT+++IL AC ++GA+
Sbjct: 293 FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAI 352

Query: 452 EHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +  +++H Y  K   G+ + SS+ T++   YAKCG IE A ++FD   + ++ + +WN+M
Sbjct: 353 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDS--MLNRSLSSWNAM 410

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  +A HG  +  F ++++M+++ + PD ITF+GLL+AC ++G+++ GR IF+ M   Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYK 470

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P  EHY  M++L G +G   EA +++  M  +PD  +W  LL ACKMH   EL E  A
Sbjct: 471 LMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYA 530

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           + LI +EPEN G+YVLLSNIYA A +WN VAK R  L D+G+KK PGCS IEI  +VHEF
Sbjct: 531 QNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 690 WAADQSHPQADAIY 703
              D+ HP+   IY
Sbjct: 591 IIGDKFHPRNREIY 604


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/697 (31%), Positives = 377/697 (54%), Gaps = 37/697 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H++ +I  G   +  + + LID YA         +VF+ +   N + + +I+   ++
Sbjct: 296 KQVHSK-LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           FG +   L+++ +M              ++ + + L D   G ++H  +V+   +S   +
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME- 227
           G ALV+ Y KC G  E    + +   +  +  +N+L++  VQ GK+E++ EL+  M+ E 
Sbjct: 415 GSALVDMYSKC-GMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSED 473

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G + D  T   LL      ++   GR +H   + ++  K++ V T L+ MYS+   L  A
Sbjct: 474 GIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYA 533

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K +F++M++++   WN MI  Y Q+G  +E+L L   M  +G + D F+  + +SS  ++
Sbjct: 534 KEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 593

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL---------------------- 385
            + + G+++H  ++RN  + +  +   L+DMY +C  +                      
Sbjct: 594 SDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMV 653

Query: 386 ---------NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
                    N A+ +FD ++ +    W+S++ GY       E+   F EM    +E D +
Sbjct: 654 SAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVL 713

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV-NTAIFISYAKCGCIEMAGELFDE 495
           T++ I+  C ++ ALEH   LH   +K G  + S V  TA+   Y+KCG I  A  +FD 
Sbjct: 714 TMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFD- 772

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             ++ K+I++WN+MIS Y+KHG   +   LY +M +  + P+ +TFL +L+AC + GLVE
Sbjct: 773 -NMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVE 831

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG  IF  M+E Y  E   EHY  MV+LLGRAG +++A+E V+ MP +P+   WG LL A
Sbjct: 832 EGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGA 891

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H + ++  L A++L  ++P+N G YV++SNIYAAAG+W  V  +R  ++ +G+KK P
Sbjct: 892 CRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDP 951

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           G SWIEI   +  F A  ++HP+ + IY  L  L L+
Sbjct: 952 GVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 988



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 157/621 (25%), Positives = 310/621 (49%), Gaps = 29/621 (4%)

Query: 6   PPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLH 62
           P +    S H K    PA+   P   +    SL+  C +    Q+   IH + +I +G +
Sbjct: 53  PDSPKPTSIHTK----PASDVNPLPYS----SLIQDCIDSNSFQRGKSIHTQ-MISNGYN 103

Query: 63  QNLILSSNLIDSYANLGLLS---LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
            +  L + ++  YA  G L     ++++F  +   N   + T++   ++  +Y + L +Y
Sbjct: 104 PDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLY 163

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M     +  + T+P VI++C  + D     ++ + VVK G +    VG ALV+ Y + 
Sbjct: 164 GRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARF 223

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G  ++    +          WN++I+  V+    E+++ +F  M   G   D+ T  + 
Sbjct: 224 -GWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASA 282

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           LR    L+S + G+ VH   +   F  D  V  AL+ MY+K    E    +FD+M ++++
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ 342

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +ISA  Q G   ++L L + M  SG++++ F   + + + + + +I  G+++H +
Sbjct: 343 VTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGH 402

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           ++RN  +  + + ++L+DMY +C  +  A ++F S+  +  VS+++++ GYV   ++ EA
Sbjct: 403 LVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEA 462

Query: 420 LRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           L L+ +M+ E G++ D  T   +L  C N       + +H + ++  +     V T +  
Sbjct: 463 LELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH 522

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y++CG +  A E+F+  ++  ++  +WNSMI  Y ++G+  +  +L+ QM+ + ++PD 
Sbjct: 523 MYSECGRLNYAKEIFN--RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580

Query: 539 ITFLGLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            +   +L++CV+    ++GR     I +   E  G          +V++  + G MD A 
Sbjct: 581 FSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ-----VVLVDMYAKCGSMDYAW 635

Query: 595 ELVKDMPFKPDARVWGPLLSA 615
           + V D   K D  +   ++SA
Sbjct: 636 K-VYDQTIKKDVILNNVMVSA 655



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 66/109 (60%), Gaps = 3/109 (2%)

Query: 37  SLLNLCEN-P--QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +++NLC + P  +H  Q+H+  I    ++ +++L + L+D Y+  G ++ ++ VF+++  
Sbjct: 717 TIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG 776

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            N + +  ++   SK G  ++ L++Y++M  + MYP E T+  ++ +CS
Sbjct: 777 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 825


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/690 (34%), Positives = 374/690 (54%), Gaps = 18/690 (2%)

Query: 30  MTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           M A     LL    N + L+Q   +H + + L GL  ++ +  NLI  Y +  L   ++ 
Sbjct: 1   MDARKLIPLLRASVNSKSLKQGKVLHQKVVTL-GLQNDVYVCKNLISLYVSCNLFDYAKN 59

Query: 87  VFNSITSPNSL-LYGTILKNLSKFGEYEKTLLVY-KQMALQSMYPAEDTYPFVIRSCSCL 144
           VF+ I +P  + L   ++   ++   Y++ L ++ K M    + P   TYP V+++C  L
Sbjct: 60  VFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGL 119

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
              + G+ IH  +VK G      VG +LV  Y KC     NE     + F ++  +    
Sbjct: 120 RRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKC-----NEFECAVKLFDEMPDKDVAC 174

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++IS   Q+GK E++   F +MR  G E DS T+   + S   L  L+ GR +H   V
Sbjct: 175 WNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELV 234

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S F  D  V+ AL+ MY K   LE A  +F++M +K  V WN MI+ Y   G     ++
Sbjct: 235 NSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQ 294

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M   G +  L T  + + + S    +  GK +H  ++RN     + +++SL+D+Y 
Sbjct: 295 LFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYF 354

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  A  IF  +   T VSW+ MI GYVT  +  +ALRLF EM    VE D +T  +
Sbjct: 355 KCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTS 414

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC  + ALE  + +H   ++  L +   V  A+   YAKCG +E A  +F  + +  
Sbjct: 415 VLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVF--KCLPE 472

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +D+++W SMI+AY  HG   +  +L+ +M QS+V+PD +TFL +L+AC +AGLV++G   
Sbjct: 473 RDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYH 532

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMH 619
           F +M   YG  P  EHY+ ++ LLGRAG + EA E+++  P    D ++   L SAC++H
Sbjct: 533 FNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLH 592

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              +L    AE LI  +P+++  Y++LSN+YA+ GKW+ V  +R+ ++D GLKK PGCSW
Sbjct: 593 KNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSW 652

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           IEI + +  F+  D SH   + I  IL  L
Sbjct: 653 IEINEKIVPFFVEDNSHYHLEGIGNILSYL 682


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/692 (31%), Positives = 370/692 (53%), Gaps = 18/692 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA+   L GL  +L + S L+D YA  G + L+ ++F  +   N + +  +L   ++
Sbjct: 233 KQMHAQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+    L ++  M    +   E T   V++ C+   +   G+ IH+ ++K G++  + +
Sbjct: 292 RGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G  LV+ Y KC G   +  G+ +   K     W++LI+   Q G+SE+S +LF LMR+  
Sbjct: 352 GCGLVDMYSKC-GLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  T+ +LL +     +L+ G+ +H       F  D++V+ AL++MY K   + D  
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT 470

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            L++ M D+D + WN  +S  +  G     L +   M+  GF  +++T I+ + S S + 
Sbjct: 471 KLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           ++ +G+Q+HA++++N  D    V  +LIDMY +C  L  A   F+ +  + + +W+ +I 
Sbjct: 531 DVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIIT 590

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
            Y   +Q  +AL  F +M+ EGV+ +  T+   L  C ++ +LE  + LH    K G  S
Sbjct: 591 NYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS 650

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V +A+   YAKCGC+E A  LF  E +  +D I WN++I  YA++G  ++    +  
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALF--EALIRRDTIAWNTIICGYAQNGQGNKALTAFRM 708

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    + PD +TF G+L+AC + GLVEEG+  F  M   +G  P+ +H A MV++LGR G
Sbjct: 709 MLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVG 768

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
             DE  + ++ M    +A +W  +L A KMH+   L E  A KL  ++PE   +Y+LLSN
Sbjct: 769 KFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSN 828

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           I+A  G+W+ V ++R+ +  +G+KK PGCSW+E    VH F + D SHPQ   I+  L  
Sbjct: 829 IFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDE 888

Query: 709 LELEIME--------------GRRESSEELKF 726
           L+ E+                G  E  E L+F
Sbjct: 889 LDRELASIQYVPKTEYVLHNVGETEKKENLRF 920



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 149/612 (24%), Positives = 293/612 (47%), Gaps = 17/612 (2%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
           +L++ YA     + ++ V   +   + + +  +++ L   G    ++ ++++M  + + P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEK 187
            E T    +++CS  +    G+++HAQ  KLG   D F  VG ALV+ Y KC G  E   
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF--VGSALVDLYAKC-GEIELAS 268

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
            M     +     WN L++   Q G      +LF  M     + +  TL  +L+     K
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L+ G+++H + +   +  +  +   L+ MYSK     DA  +F  +   D VVW+ +I+
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q G  +ES++L   M       + +T  + +S+ +   N+++G+ +HA V + G + 
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFET 448

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL--EALRLFSE 425
            V+V N+L+ MY +   ++   K+++S+  + ++SW++ + G   HD  +    L +F  
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGL--HDCGMYDRPLTIFYH 506

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M  EG   +  T I+IL +C  +  + + + +H + +K  L+  + V TA+   YAKC  
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +E A   F+  ++  +D+ TW  +I+ YA+     +    + QM+Q  V+P+  T  G L
Sbjct: 567 LEDADVAFN--RLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCL 624

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           + C +   +E G+ +   + +S G+       +++V++  + G M+EA  L + +  + D
Sbjct: 625 SGCSSLASLEGGQQLHSMVFKS-GHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRD 682

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLI---SMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
              W  ++     + +   A LTA +++    + P+      +LS          G    
Sbjct: 683 TIAWNTIICGYAQNGQGNKA-LTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHF 741

Query: 663 RTFLRDRGLKKT 674
            +  RD G+  T
Sbjct: 742 NSMYRDFGISPT 753



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 207/427 (48%), Gaps = 3/427 (0%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  ++R C+        + IH  +VK   +    +  +LV  Y KC         + +  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S W +LI   V  G +  S  LF+ M+ EG   +  TL   L++     +L+LG+
Sbjct: 175 DRDVVS-WTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H  A       DL V +AL+ +Y+K   +E A  +F  M +++ V WN++++ Y Q G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
                L+L   M+    + + FT    +   +  KN++ G+ +H+ +++ G +    +  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
            L+DMY +C     A  +F ++K   +V WS++I       QS E+++LF  M+L     
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           +  TI ++L A  N G L++ + +H    K G  +  +V+ A+   Y K GC+    +L+
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E +  +D+I+WN+ +S     G + +   ++  M +    P++ TF+ +L +C     
Sbjct: 474 --ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 554 VEEGRII 560
           V  GR +
Sbjct: 532 VHYGRQV 538


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/692 (31%), Positives = 370/692 (53%), Gaps = 18/692 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA+   L GL  +L + S L+D YA  G + L+ ++F  +   N + +  +L   ++
Sbjct: 233 KQMHAQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+    L ++  M    +   E T   V++ C+   +   G+ IH+ ++K G++  + +
Sbjct: 292 RGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G  LV+ Y KC G   +  G+ +   K     W++LI+   Q G+SE+S +LF LMR+  
Sbjct: 352 GCGLVDMYSKC-GLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  T+ +LL +     +L+ G+ +H       F  D++V+ AL++MY K   + D  
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT 470

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            L++ M D+D + WN  +S  +  G     L +   M+  GF  +++T I+ + S S + 
Sbjct: 471 KLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           ++ +G+Q+HA++++N  D    V  +LIDMY +C  L  A   F+ +  + + +W+ +I 
Sbjct: 531 DVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIIT 590

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
            Y   +Q  +AL  F +M+ EGV+ +  T+   L  C ++ +LE  + LH    K G  S
Sbjct: 591 NYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS 650

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V +A+   YAKCGC+E A  LF  E +  +D I WN++I  YA++G  ++    +  
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALF--EALIRRDTIAWNTIICGYAQNGQGNKALTAFRM 708

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    + PD +TF G+L+AC + GLVEEG+  F  M   +G  P+ +H A MV++LGR G
Sbjct: 709 MLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVG 768

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
             DE  + ++ M    +A +W  +L A KMH+   L E  A KL  ++PE   +Y+LLSN
Sbjct: 769 KFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSN 828

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           I+A  G+W+ V ++R+ +  +G+KK PGCSW+E    VH F + D SHPQ   I+  L  
Sbjct: 829 IFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDE 888

Query: 709 LELEIME--------------GRRESSEELKF 726
           L+ E+                G  E  E L+F
Sbjct: 889 LDRELASIQYVPKTEYVLHNVGETEKKENLRF 920



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 149/612 (24%), Positives = 293/612 (47%), Gaps = 17/612 (2%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
           +L++ YA     + ++ V   +   + + +  +++ L   G    ++ ++++M  + + P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEK 187
            E T    +++CS  +    G+++HAQ  KLG   D F  VG ALV+ Y KC G  E   
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLF--VGSALVDLYAKC-GEIELAS 268

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
            M     +     WN L++   Q G      +LF  M     + +  TL  +L+     K
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L+ G+++H + +   +  +  +   L+ MYSK     DA  +F  +   D VVW+ +I+
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q G  +ES++L   M       + +T  + +S+ +   N+++G+ +HA V + G + 
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFET 448

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL--EALRLFSE 425
            V+V N+L+ MY +   ++   K+++S+  + ++SW++ + G   HD  +    L +F  
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSG--LHDCGMYDRPLTIFYH 506

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M  EG   +  T I+IL +C  +  + + + +H + +K  L+  + V TA+   YAKC  
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +E A   F+  ++  +D+ TW  +I+ YA+     +    + QM+Q  V+P+  T  G L
Sbjct: 567 LEDADVAFN--RLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCL 624

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           + C +   +E G+ +   + +S G+       +++V++  + G M+EA  L + +  + D
Sbjct: 625 SGCSSLASLEGGQQLHSMVFKS-GHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRD 682

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLI---SMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
              W  ++     + +   A LTA +++    + P+      +LS          G    
Sbjct: 683 TIAWNTIICGYAQNGQGNKA-LTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHF 741

Query: 663 RTFLRDRGLKKT 674
            +  RD G+  T
Sbjct: 742 NSMYRDFGISPT 753



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 207/427 (48%), Gaps = 3/427 (0%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  ++R C+        + IH  +VK   +    +  +LV  Y KC         + +  
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S W +LI   V  G +  S  LF+ M+ EG   +  TL   L++     +L+LG+
Sbjct: 175 DRDVVS-WTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H  A       DL V +AL+ +Y+K   +E A  +F  M +++ V WN++++ Y Q G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
                L+L   M+    + + FT    +   +  KN++ G+ +H+ +++ G +    +  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
            L+DMY +C     A  +F ++K   +V WS++I       QS E+++LF  M+L     
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           +  TI ++L A  N G L++ + +H    K G  +  +V+ A+   Y K GC+    +L+
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E +  +D+I+WN+ +S     G + +   ++  M +    P++ TF+ +L +C     
Sbjct: 474 --ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 554 VEEGRII 560
           V  GR +
Sbjct: 532 VHYGRQV 538


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/627 (31%), Positives = 359/627 (57%), Gaps = 10/627 (1%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           + L++ VF+ I  P+ +L+  +++  +  G +++++ +Y  M    + P   T+PF++++
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK--GMIQRKFKDLK 198
           CS L     G  IH     LG      V  AL+  Y KC   ++ +     I  + +D+ 
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           + WN++I+    +    ++      M+  G   +S TL+++L +  +  +L  G+ +H  
Sbjct: 177 A-WNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAY 235

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            + + F  ++ + TALL MY+K   L  A+ +F+ ++ K+ V W+ MI  Y       ++
Sbjct: 236 YIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDA 295

Query: 319 LEL---LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           L L   ++C+   G      T    + + + + +++ GK++H +++++G D   +V NSL
Sbjct: 296 LALYDDMLCIY--GLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSL 353

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           I MY +C  ++ A    D +  K  VS+S++I G V +  + +AL +F +M+  G+    
Sbjct: 354 ISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYL 413

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+I +LPAC ++ AL+H    HGY++  G  + +S+  AI   Y+KCG I ++ E+FD 
Sbjct: 414 ETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFD- 472

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
            ++ ++DII+WN+MI  Y  HG   +   L+ +++   ++PD +T + +L+AC ++GLV 
Sbjct: 473 -RMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVT 531

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG+  F  M +++  +P   HY  MV+LL RAG++DEA   ++ MPF P+ R+WG LL+A
Sbjct: 532 EGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAA 591

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C+ H   E+ E  ++K+  + PE  GN+VL+SNIY++ G+W+  A +R+  R  G KK+P
Sbjct: 592 CRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSP 651

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAI 702
           GCSW+EI  ++H F    QSHPQ+ +I
Sbjct: 652 GCSWVEISGVIHVFIGGHQSHPQSASI 678



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 218/443 (49%), Gaps = 20/443 (4%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANL 78
           P N T P         LL  C + Q LQ    IH    IL GL  +L +S+ L+  YA  
Sbjct: 105 PTNFTFPF--------LLKACSSLQALQLGRLIHTHAHIL-GLSMDLYVSTALLHMYAKC 155

Query: 79  GLLSLSQQVFNSITSPNS--LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           G L  +Q +FNSI+  +   + +  ++   S    + +T+    QM    + P   T   
Sbjct: 156 GHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVS 215

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKGMIQRKF 194
           ++ +         G+ IHA  ++  F  FD+V    AL++ Y KC   F   K +     
Sbjct: 216 ILPTIGQANALHQGKAIHAYYIRNFF--FDNVVLQTALLDMYAKCHLLFYARK-IFNTVN 272

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
           K     W+++I   V +     +  L+  ++ + G      TL  +LR+  +L  L+ G+
Sbjct: 273 KKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGK 332

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +HC  + S    D +V  +L+SMY+K   +++A    D+M  KD V ++ +IS   Q+G
Sbjct: 333 KLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNG 392

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
           + +++L +   M  SG    L T IA + + S +  ++ G   H   +  G     S+ N
Sbjct: 393 YAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICN 452

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           ++IDMY +C  +  +R+IFD ++ + ++SW++MI GY  H   +EAL LF E++  G++ 
Sbjct: 453 AIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKP 512

Query: 434 DFVTIINILPACVNIGALEHVKY 456
           D VT+I +L AC + G +   KY
Sbjct: 513 DDVTLIAVLSACSHSGLVTEGKY 535



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 200/428 (46%), Gaps = 16/428 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + IHA Y I +    N++L + L+D YA   LL  ++++FN++   N + +  ++     
Sbjct: 230 KAIHA-YYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL 288

Query: 109 FGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
                  L +Y  M  +  + P   T   ++R+C+ L D   G+K+H  ++K G D    
Sbjct: 289 HDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTT 348

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           VG++L+  Y KC G  +N  G +          ++++IS  VQNG +EK+  +F+ M+  
Sbjct: 349 VGNSLISMYAKC-GIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSS 407

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G      T+I LL +   L +L+ G   H   VV  F  D S+  A++ MYSK   +  +
Sbjct: 408 GIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITIS 467

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD+M ++D + WN MI  Y   G   E+L L   +   G + D  T IA +S+ S  
Sbjct: 468 REIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHS 527

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHN-SLIDMYCECEDLNCARKIFDSVK-TKTVVSWSS 405
             +  GK   +++ +N +      H   ++D+     +L+ A      +     V  W +
Sbjct: 528 GLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGA 587

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVE--VDFVTIINILPACVNIGALEHVKYL------ 457
           ++    TH       ++  +++L G E   +FV + NI  +   +G  +   Y+      
Sbjct: 588 LLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSS---VGRWDDAAYIRSIQRH 644

Query: 458 HGYSMKLG 465
           HGY    G
Sbjct: 645 HGYKKSPG 652



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 2/237 (0%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
            ++  AR +FD +   +VV W+ MI+ Y       +++ L+  M   GV     T   +L
Sbjct: 55  NEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLL 114

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC ++ AL+  + +H ++  LGL+    V+TA+   YAKCG +  A  LF+      +D
Sbjct: 115 KACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRD 174

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I+ WN+MI+A++ H   +Q      QM+Q+ V P+  T + +L     A  + +G+ I  
Sbjct: 175 IVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHA 234

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
               ++ ++      A ++++  +   +  AR++   +  K D   W  ++    +H
Sbjct: 235 YYIRNFFFDNVVLQTA-LLDMYAKCHLLFYARKIFNTVNKKNDV-CWSAMIGGYVLH 289


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 353/623 (56%), Gaps = 6/623 (0%)

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           VF+ +   N   +  ++   ++ G +      + +M    + P +  Y  +I+SC  L  
Sbjct: 123 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 182

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
              G+ +HAQ+V  GF +   V  +L+  Y K  G  E+   +     +  +  WN++IS
Sbjct: 183 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKL-GSIEDSYWVFNMMTEHNQVSWNAMIS 241

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               NG   ++F+LF  M+      +  TL+++ ++  +L  + +G+ V   A       
Sbjct: 242 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 301

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
           ++ V TAL+ MYSK  SL DA+ +FD   ++      WN MIS Y QSG  +E+LEL + 
Sbjct: 302 NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 361

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV-SVHNSLIDMYCECE 383
           M ++G  +DL+T  +  ++I+  K++++G+ +H  VL+ G D  V SV+N++ D Y +C 
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L   RK+FD ++ + +VSW++++  Y       EAL  F  M+ EG   +  T  ++L 
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLI 481

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C ++  LE+ + +HG   K GL++   + +A+   YAKCG I  AG++FD  KI + DI
Sbjct: 482 SCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFD--KISNPDI 539

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W ++IS YA+HG      +L+ +M+ S ++ + +T L +L AC + G+VEEG   F++
Sbjct: 540 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 599

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M++ YG  P  EHYA +++LLGR G +D+A E ++ MP +P+  VW  LL  C++H   E
Sbjct: 600 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 659

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L E+ A K++S+ PE +  YVLLSN Y   G +     +R  ++D+G+KK PG SWI + 
Sbjct: 660 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719

Query: 684 KLVHEFWAADQSHPQADAIYTIL 706
             VH+F++ DQ HPQ   IY  L
Sbjct: 720 GRVHKFYSGDQQHPQKKEIYVKL 742



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 265/525 (50%), Gaps = 14/525 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +HA+ I++ G   ++ +S++L++ YA LG +  S  VFN +T  N + +  ++   + 
Sbjct: 187 KMVHAQ-IVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 245

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G + +   ++ +M   +  P   T   V ++   L+D   G+++     +LG +    V
Sbjct: 246 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 305

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKD--LKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           G AL++ Y KC G   + + +    F +  + + WN++IS   Q+G S+++ EL+  M  
Sbjct: 306 GTALIDMYSKC-GSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQ 364

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL---SVNTALLSMYSKLAS 283
            G   D  T  ++  +    KSL+ GR+VH + +      DL   SVN A+   YSK   
Sbjct: 365 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGL--DLMVVSVNNAIADAYSKCGF 422

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LED + +FD+M ++D V W  +++AY QS   +E+L     M   GF  + FT  + + S
Sbjct: 423 LEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLIS 482

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +++  +E+G+Q+H  + + G D +  + ++LIDMY +C  +  A K+FD +    +VSW
Sbjct: 483 CASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSW 542

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSM 462
           +++I GY  H    +AL+LF  M+L G++ + VT++ +L AC + G +E  + Y      
Sbjct: 543 TAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMED 602

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
             G+         I     + G ++ A E   +  ++  +++ W +++     HG+    
Sbjct: 603 GYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMV-WQTLLGGCRVHGNVE-- 659

Query: 523 FKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMKE 566
                  K   +RP+   T++ L    +  G  E+G  +   MK+
Sbjct: 660 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKD 704



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 4/328 (1%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSV--NTALLSMYSKLASLEDAKMLFD 292
           LI++LR   E  S+   + VH + + S+F  KDL V  N A   +YSK +    A  +FD
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA-AHVYSKCSEFRAACGVFD 125

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +M  ++   W +MI    + G   +  +    M+ SG   D F   A + S   + ++E 
Sbjct: 126 EMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLEL 185

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           GK +HA ++  G    + V  SL++MY +   +  +  +F+ +     VSW++MI G  +
Sbjct: 186 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 245

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +   LEA  LF  MK      +  T++++  A   +  +   K +   + +LG+     V
Sbjct: 246 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 305

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            TA+   Y+KCG +  A  +FD   I+      WN+MIS Y++ G   +  +LY QM Q+
Sbjct: 306 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN 365

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRII 560
            +  DL T+  +  A   +  ++ GR++
Sbjct: 366 GITSDLYTYCSVFNAIAASKSLQFGRVV 393


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/659 (33%), Positives = 373/659 (56%), Gaps = 6/659 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   ++  G      + + L+  Y+ LG    ++QVFN++   + + Y +++  LS+
Sbjct: 291 EQLHG-LVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQ 349

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  +K L ++K+M L  + P   T   ++ +CS +   + G++ H+  +K G  S   +
Sbjct: 350 QGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIIL 409

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNS-LISLAVQNGKSEKSFELFKLMRME 227
             AL++ Y+KC       +  +  + +++   WN  L++  + +  +E SF++F  M+ME
Sbjct: 410 EGALLDLYVKCSDIKTAHEFFLSTETENV-VLWNVMLVAYGLLDNLNE-SFKIFTQMQME 467

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E +  T  ++LR+   L++++LG  +H   + + F  ++ V++ L+ MY+KL  L+ A
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHA 527

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
             +F ++ +KD V W  MI+ Y Q     E+L L   M   G  +D     +A+S+ + +
Sbjct: 528 LKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGI 587

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           + +  G+Q+HA    +G    +SV N+L+ +Y  C  +  A   FD + +K  +SW+S+I
Sbjct: 588 QALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLI 647

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            G+       EAL LFS+M   G E++  T    + A  N+  ++  K +H   +K G +
Sbjct: 648 SGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHD 707

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S + V+  +   YAKCG I+ A   F E  +  K+ I+WN+M++ Y++HG   +   L+ 
Sbjct: 708 SETEVSNVLITLYAKCGNIDDAERQFFE--MPEKNEISWNAMLTGYSQHGHGFKALSLFE 765

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            MKQ  V P+ +TF+G+L+AC + GLV+EG   F+ M+E +G  P  EHYA +V+LLGR+
Sbjct: 766 DMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRS 825

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G +  AR  V++MP +PDA V   LLSAC +H   ++ E  A  L+ +EP+++  YVLLS
Sbjct: 826 GLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLS 885

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           N+YA  GKW    + R  ++DRG+KK PG SWIE+   VH F+A DQ HP  D IY  L
Sbjct: 886 NMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYL 944



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 286/581 (49%), Gaps = 15/581 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           ++H + I+  G    ++L   L+D Y   G L  +  VF+ +       +  +L      
Sbjct: 89  KLHGK-ILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAG 147

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL-LDFISGEKIHAQVVKLGFDSFDDV 168
               + L ++++M  + + P E TY  V+R C    + F   EKIHA+ +  G+++   V
Sbjct: 148 KMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFV 207

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
            + L++ Y K   GF N     ++ F  L+ R    W +++S   Q+G  E++  LF  M
Sbjct: 208 CNPLIDLYFK--NGFLNSA---KKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM 262

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
              G         ++L +  +++  ++G  +H + +   F  +  V  AL+++YS+L + 
Sbjct: 263 HTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNF 322

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
             A+ +F+ M  +D V +N +IS   Q G+  ++LEL   M     + D  T  + +S+ 
Sbjct: 323 IPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC 382

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S++  +  GKQ H+  ++ G    + +  +L+D+Y +C D+  A + F S +T+ VV W+
Sbjct: 383 SSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWN 442

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
            M+  Y   D   E+ ++F++M++EG+E +  T  +IL  C ++ A++  + +H   +K 
Sbjct: 443 VMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT 502

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G      V++ +   YAK G ++ A ++F   ++  KD+++W +MI+ YA+H  +++   
Sbjct: 503 GFQFNVYVSSVLIDMYAKLGKLDHALKIF--RRLKEKDVVSWTAMIAGYAQHEKFAEALN 560

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+ +M+   +  D I F   ++AC     + +G+ I  +   S GY        ++V+L 
Sbjct: 561 LFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVS-GYSDDLSVGNALVSLY 619

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            R G + +A     D  F  D   W  L+S        E A
Sbjct: 620 ARCGKVRDAY-FAFDKIFSKDNISWNSLISGFAQSGHCEEA 659



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/530 (25%), Positives = 260/530 (49%), Gaps = 21/530 (3%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY +++  C     F  G K+H +++K+GF +   + + L++ YI     F +  G +  
Sbjct: 70  TYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI----AFGDLDGAVT- 124

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST----V 244
            F ++  R    WN ++   V    + +   LF+ M  E  + D  T   +LR      V
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV 184

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
               +E    +H   +   +   L V   L+ +Y K   L  AK +FD +  +D V W  
Sbjct: 185 PFHCVEK---IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVA 241

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           M+S   QSG  +E++ L   M  SG     +   + +S+ + ++  + G+Q+H  VL+ G
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              +  V N+L+ +Y    +   A ++F+++  +  VS++S+I G      S +AL LF 
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK 361

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +M L+ ++ D VT+ ++L AC ++GAL   K  H Y++K G++S   +  A+   Y KC 
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS 421

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            I+ A E F     ++++++ WN M+ AY    + ++ FK++TQM+   + P+  T+  +
Sbjct: 422 DIKTAHEFF--LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSI 479

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L  C +   V+ G  I  ++ ++ G++ +    + ++++  + G +D A ++ + +  K 
Sbjct: 480 LRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK- 537

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           D   W  +++    H +   A L   K +  +  ++ N    S I A AG
Sbjct: 538 DVVSWTAMIAGYAQHEKFAEA-LNLFKEMQDQGIHSDNIGFASAISACAG 586



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 164/359 (45%), Gaps = 4/359 (1%)

Query: 202 NSLISLAVQNGKSEKS-FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           N+ +S A  N + E +      LM   G   +S T + LL   +       G  +H   +
Sbjct: 36  NTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKIL 95

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              FC ++ +   L+ +Y     L+ A  +FD+M  +    WN ++  +         L 
Sbjct: 96  KMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLG 155

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMK-NIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           L   M++   + D  T    +             +++HA  + +G +  + V N LID+Y
Sbjct: 156 LFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLY 215

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +   LN A+K+FD ++ +  VSW +M+ G        EA+ LF +M   GV        
Sbjct: 216 FKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFS 275

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC  +   +  + LHG  +K G +  + V  A+   Y++ G    A ++F+   + 
Sbjct: 276 SVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN--AML 333

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
            +D +++NS+IS  ++ G   +  +L+ +M    ++PD +T   LL+AC + G +  G+
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGK 392



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 38/344 (11%)

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           AY         +  L  M   G RA+  T +  +    +      G ++H  +L+ G   
Sbjct: 42  AYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCA 101

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           +V +   L+D+Y    DL+ A  +FD +  + +  W+ ++  +V    +   L LF  M 
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRML 161

Query: 428 LEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGL-NSLSSVNTAIFISYAKCGC 485
            E V+ D  T   +L  C       H V+ +H  ++  G  NSL   N  I + Y K G 
Sbjct: 162 QEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDL-YFKNGF 220

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A ++FD   +  +D ++W +M+S  ++ G   +   L+ QM  S V P    F  +L
Sbjct: 221 LNSAKKVFD--GLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVL 278

Query: 546 TACVNAGLVEEGR----IIFKE--MKESY-------------GYEPSQE----------- 575
           +AC      + G     ++ K+    E+Y              + P+++           
Sbjct: 279 SACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEV 338

Query: 576 HYASMVNLLGRAGHMDEARELVKDM---PFKPDARVWGPLLSAC 616
            Y S+++ L + G+ D+A EL K M     KPD      LLSAC
Sbjct: 339 SYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC 382


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/674 (33%), Positives = 368/674 (54%), Gaps = 79/674 (11%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDS---YANLGLLSLSQQVFNSI 91
           S SLL+ C+  Q L+ IHA+ +I  GLH      S L++      N   L  +  VF +I
Sbjct: 5   SLSLLHNCKTLQSLRIIHAQ-MIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
             PN L++ T+ +  +   +    + +Y  M    + P   T+PF+++SC+ L     G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           +IH  V+KLG++         ++ Y+                         SLIS+ V+N
Sbjct: 124 QIHGHVLKLGYE---------LDLYVH-----------------------TSLISMYVKN 151

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+ + + ++F     +G+                                    +D+   
Sbjct: 152 GRWKDAHKVF-----DGSSH----------------------------------RDVVSY 172

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TAL++ Y+    +E A+ +FD++  KD V WN +IS Y  +G  KE+L+L   M+++  +
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T +  VS+ +   +I+ G+Q+H+ +  +G    + + N+LID+Y +C ++  A  +
Sbjct: 233 PDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGL 292

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K V+SW++MI GY   +   EAL LF EM   G   + VT+++ILPAC  +GA+
Sbjct: 293 FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352

Query: 452 EHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +  +++H Y  K   G+ + SS+ T++   YAKCG IE A ++F+   +  + +   N+M
Sbjct: 353 DFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS--MHHRTLSACNAM 410

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  +A HG  +  F ++++M+++ + PD ITF+GLL+AC ++G+++ GR IF+ M ++Y 
Sbjct: 411 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYK 470

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P  EHY  M++LLG  G   EA E++  M  +PD  +W  LL ACKMH   EL E  A
Sbjct: 471 ITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFA 530

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           +KLI +EPEN G+YVLLSNIYA AG+WN VA +R  L D+G+KK PGCS IEI  +VHEF
Sbjct: 531 QKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 690 WAADQSHPQADAIY 703
              D+ HP+   IY
Sbjct: 591 IIGDKFHPRNREIY 604


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/640 (33%), Positives = 357/640 (55%), Gaps = 9/640 (1%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           G LSL++ +F+ I +P    Y  +++  S  G      L       +   P   T+PFV+
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           ++CS LLD  S   +H    + G  +   V  ALV+ Y KC   F +   + +R      
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKC-ASFRHAATVFRRMPARDV 195

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             WN++++    +GK   +     LM+ + A  ++ TL+ LL    +  +L  GR VH  
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAP-NASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 259 AV----VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +V    + D    + V TALL MY+K   L  A  +F+ M+ ++ V W+ ++  +   G 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 315 PKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             E+  L   M+  G      T++A A+ + + + ++  GKQ+HA + ++G    ++  N
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGN 374

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           SL+ MY +   ++ A  +FD +  K  VS+S+++ GYV + ++ EA R+F +M+   V+ 
Sbjct: 375 SLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQP 434

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D  T+++++PAC ++ AL+H K  HG  +  G+ S +S+  A+   YAKCG I+++ ++F
Sbjct: 435 DVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIF 494

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   + ++DI++WN+MI+ Y  HG   +   L+  MK     PD +TF+ L++AC ++GL
Sbjct: 495 DV--MPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGL 552

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V EG+  F  M   YG  P  EHY  MV+LL R G +DEA + ++ MP K D RVWG LL
Sbjct: 553 VTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALL 612

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            AC++H   +L +  +  +  + PE  GN+VLLSNI++AAG+++  A++R   +++G KK
Sbjct: 613 GACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKK 672

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +PGCSWIEI   +H F   D+SH Q+  IY  L  + ++I
Sbjct: 673 SPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDI 712


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 353/623 (56%), Gaps = 6/623 (0%)

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           VF+ +   N   +  ++   ++ G +      + +M    + P +  Y  +I+SC  L  
Sbjct: 177 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDS 236

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
              G+ +HAQ+V  GF +   V  +L+  Y K  G  E+   +     +  +  WN++IS
Sbjct: 237 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKL-GSIEDSYWVFNMMTEHNQVSWNAMIS 295

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               NG   ++F+LF  M+      +  TL+++ ++  +L  + +G+ V   A       
Sbjct: 296 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 355

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
           ++ V TAL+ MYSK  SL DA+ +FD   ++      WN MIS Y QSG  +E+LEL + 
Sbjct: 356 NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 415

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV-SVHNSLIDMYCECE 383
           M ++G  +DL+T  +  ++I+  K++++G+ +H  VL+ G D  V SV+N++ D Y +C 
Sbjct: 416 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 475

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L   RK+FD ++ + +VSW++++  Y       EAL  F  M+ EG   +  T  ++L 
Sbjct: 476 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLI 535

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C ++  LE+ + +HG   K GL++   + +A+   YAKCG I  AG++FD  KI + DI
Sbjct: 536 SCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFD--KISNPDI 593

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W ++IS YA+HG      +L+ +M+ S ++ + +T L +L AC + G+VEEG   F++
Sbjct: 594 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 653

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M++ YG  P  EHYA +++LLGR G +D+A E ++ MP +P+  VW  LL  C++H   E
Sbjct: 654 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 713

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L E+ A K++S+ PE +  YVLLSN Y   G +     +R  ++D+G+KK PG SWI + 
Sbjct: 714 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 773

Query: 684 KLVHEFWAADQSHPQADAIYTIL 706
             VH+F++ DQ HPQ   IY  L
Sbjct: 774 GRVHKFYSGDQQHPQKKEIYVKL 796



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/583 (26%), Positives = 285/583 (48%), Gaps = 34/583 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +HA+ I++ G   ++ +S++L++ YA LG +  S  VFN +T  N + +  ++   + 
Sbjct: 241 KMVHAQ-IVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 299

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G + +   ++ +M   +  P   T   V ++   L+D   G+++     +LG +    V
Sbjct: 300 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 359

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKD--LKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           G AL++ Y KC G   + + +    F +  + + WN++IS   Q+G S+++ EL+  M  
Sbjct: 360 GTALIDMYSKC-GSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQ 418

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL---SVNTALLSMYSKLAS 283
            G   D  T  ++  +    KSL+ GR+VH + +      DL   SVN A+   YSK   
Sbjct: 419 NGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGL--DLMVVSVNNAIADAYSKCGF 476

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LED + +FD+M ++D V W  +++AY QS   +E+L     M   GF  + FT  + + S
Sbjct: 477 LEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLIS 536

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +++  +E+G+Q+H  + + G D +  + ++LIDMY +C  +  A K+FD +    +VSW
Sbjct: 537 CASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSW 596

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSM 462
           +++I GY  H    +AL+LF  M+L G++ + VT++ +L AC + G +E  + Y      
Sbjct: 597 TAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMED 656

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
             G+         I     + G ++ A E   +  ++  +++ W +++     HG+    
Sbjct: 657 GYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMV-WQTLLGGCRVHGNVE-- 713

Query: 523 FKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
                  K   +RP+   T++ L    +  G  E+G  +   MK+       +E   S +
Sbjct: 714 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQ---GVKKEPGYSWI 770

Query: 582 NLLGRAG-----------------HMDEARELVKDMPFKPDAR 607
           ++ GR                    ++E RE +K M + PD R
Sbjct: 771 SVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIKAMGYVPDLR 813



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 195/418 (46%), Gaps = 9/418 (2%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSV--NTALLSMYSKLASLEDAKMLFD 292
           LI++LR   E  S+   + VH + + S+F  KDL V  N A   +YSK +    A  +FD
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA-AHVYSKCSEFRAACGVFD 179

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +M  ++   W +MI    + G   +  +    M+ SG   D F   A + S   + ++E 
Sbjct: 180 EMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLEL 239

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           GK +HA ++  G    + V  SL++MY +   +  +  +F+ +     VSW++MI G  +
Sbjct: 240 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 299

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +   LEA  LF  MK      +  T++++  A   +  +   K +   + +LG+     V
Sbjct: 300 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 359

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            TA+   Y+KCG +  A  +FD   I+      WN+MIS Y++ G   +  +LY QM Q+
Sbjct: 360 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN 419

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            +  DL T+  +  A   +  ++ GR++   + +            ++ +   + G +++
Sbjct: 420 GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLED 479

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN-AGNYVLLSNI 649
            R++   M  + D   W  L++A   +S++ L E        M  E  A N    S++
Sbjct: 480 VRKVFDRME-ERDIVSWTTLVTA---YSQSSLGEEALATFCLMREEGFAPNQFTFSSV 533


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/674 (34%), Positives = 375/674 (55%), Gaps = 9/674 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C   + L   +Q+H   +++ G   ++ +++ L+  YA       S+++F+ I  
Sbjct: 162 SVLKACSIVKDLRIGKQVHG-VVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +     +     + + ++ +M L  + P E +   ++ +C+ L D   G+ I
Sbjct: 221 RNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNG 212
           H  ++KLG+D      +ALV+ Y K  G   +   + ++ K  D+ S WN++I+  V + 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKV-GDLADAISVFEKIKQPDIVS-WNAVIAGCVLHE 338

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             E++ EL   M+  G   +  TL + L++   +   ELGR +H   +  D   DL V+ 
Sbjct: 339 HHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSV 398

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MYSK   LEDA+M F+ + +KD + WN +IS Y Q     E+L L + M + G   
Sbjct: 399 GLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF 458

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           +  T    + S + ++ +   +Q+H   +++G    + V NSLID Y +C  +  A +IF
Sbjct: 459 NQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIF 518

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +      +VS++SMI  Y  + Q  EAL+LF EM+   ++ D     ++L AC N+ A E
Sbjct: 519 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFE 578

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K LH + +K G         ++   YAKCG I+ AG  F E  +  + I++W++MI  
Sbjct: 579 QGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE--LTERGIVSWSAMIGG 636

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            A+HG   Q  +L+ QM +  V P+ IT + +L AC +AGLV E ++ F+ M+E +G++P
Sbjct: 637 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 696

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
            QEHYA M++LLGRAG ++EA ELV  MPF+ +A VWG LL A ++H + EL    AE L
Sbjct: 697 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEML 756

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +EPE +G +VLL+NIYA+AGKW  VA++R  +RD  +KK PG SWIE+   V+ F   
Sbjct: 757 FILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVG 816

Query: 693 DQSHPQADAIYTIL 706
           D+SH ++  IY  L
Sbjct: 817 DRSHYRSQEIYAKL 830



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 159/563 (28%), Positives = 297/563 (52%), Gaps = 16/563 (2%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL+ C   + L+   QIHA +I   GL  +  + ++LI+ Y+       ++++ +  + P
Sbjct: 62  LLSQCCTTKSLRPGLQIHA-HITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEP 120

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   ++ G     L+ + +M L  +   E T+  V+++CS + D   G+++H
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
             VV  GF+    V + LV  Y KCD   ++     +R F ++  R    WN+L S  VQ
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDS-----KRLFDEIPERNVVSWNALFSCYVQ 235

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
                ++  LF  M + G + +  +L +++ +   L+    G+I+H   +   +  D   
Sbjct: 236 IDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             AL+ MY+K+  L DA  +F+K+   D V WN +I+        +++LELL  M RSG 
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGI 355

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             ++FT  +A+ + + M   E G+Q+H+++++   +  + V   L+DMY +C+ L  AR 
Sbjct: 356 CPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 415

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
            F+ +  K +++W+++I GY  + + +EAL LF EM  EG+  +  T+  IL +   +  
Sbjct: 416 AFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV 475

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +   + +HG S+K G +S   V  ++  SY KC  +E A  +F+E  I   D++++ SMI
Sbjct: 476 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG--DLVSFTSMI 533

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +AYA++G   +  KL+ +M+  +++PD      LL AC N    E+G+ +   + + YG+
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGF 592

Query: 571 EPSQEHYASMVNLLGRAGHMDEA 593
                   S+VN+  + G +D+A
Sbjct: 593 VLDIFAGNSLVNMYAKCGSIDDA 615



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 160/606 (26%), Positives = 284/606 (46%), Gaps = 41/606 (6%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +++ + +F +  +T  +   +   +  P   +Y  ++  C        G +IHA + K G
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
                 + + L+  Y KC       K + +    DL S W++LIS   QNG    +   F
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVS-WSALISGYAQNGLGGGALMAF 145

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M + G + +  T  ++L++   +K L +G+ VH V VVS F  D+ V   L+ MY+K 
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
               D+K LFD++ +++ V WN + S Y Q  F  E++ L   MV SG + + F+  + V
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
           ++ + +++   GK +H  +++ G D+     N+L+DMY +  DL  A  +F+ +K   +V
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+++I G V H+   +AL L  +MK  G+  +  T+ + L AC  +G  E  + LH   
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSL 385

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           MK+ + S   V+  +   Y+KC  +E A   F+   +  KD+I WN++IS Y+++ +  +
Sbjct: 386 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN--LLPEKDLIAWNAIISGYSQYWEDME 443

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR---------------IIFKEMKE 566
              L+ +M +  +  +  T   +L +     +V   R                +   + +
Sbjct: 444 ALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLID 503

Query: 567 SYGYEPSQEH---------------YASMVNLLGRAGHMDEAREL---VKDMPFKPDARV 608
           SYG     E                + SM+    + G  +EA +L   ++DM  KPD  V
Sbjct: 504 SYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFV 563

Query: 609 WGPLLSACKMHSETELAELTAEKLIS---MEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
              LL+AC   S  E  +     ++    +    AGN   L N+YA  G  +   +  + 
Sbjct: 564 CSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS--LVNMYAKCGSIDDAGRAFSE 621

Query: 666 LRDRGL 671
           L +RG+
Sbjct: 622 LTERGI 627


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/634 (32%), Positives = 358/634 (56%), Gaps = 3/634 (0%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           + L++++F  +   N + +  +L   ++ G+ +K L ++ +M       ++ T   V++ 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+       G+ +HA  ++ G +  + +G +LV+ Y KC   ++  K   + +  D+ + 
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA- 119

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W+++I+   Q G  +++ ELF LMR +GA  +  TL +L+ +   +  L  G+ +H    
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D  V+  L+ MY K   +ED   +F+ M++ D V WN ++S +Y S        
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M+  GF+ ++FT I+ + S S++ + E+GKQ+HA++++N SD    V  +L+DMY 
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYA 299

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   L  A   FD +  + + SW+ +I GY   DQ+ +A++ F +M+ EG++ +  T+ +
Sbjct: 300 KARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            L  C ++  LE+ + LH  ++K G      V +A+   Y KCGC+E A  +F  + + S
Sbjct: 360 CLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIF--KGLIS 417

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +DI++WN++IS Y++HG   +  + +  M    + PD  TF+G+L+AC   GLVEEG+  
Sbjct: 418 RDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKR 477

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M + YG  PS EHYA MV++LGRAG  +E +  +++M   P + +W  +L ACK+H 
Sbjct: 478 FDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHG 537

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             +  E  A+KL  MEP    +Y+LLSNI+A+ G+W+ V  +R  +  RG+KK PGCSW+
Sbjct: 538 NVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWV 597

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIM 714
           E+   VH F + D SHP+   IY  L  L   +M
Sbjct: 598 EVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLM 631



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 251/519 (48%), Gaps = 29/519 (5%)

Query: 9   CSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNL 65
           C ++    KF +F  +            ++L  C N   L++   +HA   +  G   + 
Sbjct: 40  CKMKECETKFSKFTLS------------TVLKGCANTGSLREGKVLHA-LALRSGCEIDE 86

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            L  +L+D Y+  G +  + +VF  I +P+ + +  ++  L + G  ++   ++  M  +
Sbjct: 87  FLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRK 146

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
              P + T   ++ + + + D   G+ IH  + K GF+S + V + L+  Y+K     + 
Sbjct: 147 GARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDG 206

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            K        DL S WN+L+S    +    +   +F  M +EG + +  T I++LRS   
Sbjct: 207 NKVFEAMTNPDLVS-WNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSS 265

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L   E G+ VH   + +    D  V TAL+ MY+K   LEDA + FD++ ++D   W ++
Sbjct: 266 LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVI 325

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           IS Y Q+   +++++    M R G + + +T  + +S  S M  +E G+Q+HA  ++ G 
Sbjct: 326 ISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGH 385

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              + V ++L+D+Y +C  +  A  IF  + ++ +VSW+++I GY  H Q  +AL  F  
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRM 445

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M  EG+  D  T I +L AC  +G +E      G      ++ +  +N +I         
Sbjct: 446 MLSEGIMPDEATFIGVLSACSFMGLVE-----EGKKRFDSMSKIYGINPSIEHYACMVDI 500

Query: 486 IEMAGELFDEEKIDSKDI------ITWNSMISAYAKHGD 518
           +  AG+ F+E KI  +++      + W +++ A   HG+
Sbjct: 501 LGRAGK-FNEVKIFIEEMNLTPYSLIWETVLGACKLHGN 538


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/789 (29%), Positives = 399/789 (50%), Gaps = 114/789 (14%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C    +L+   Q+HA+ ++++G+     L S L++ Y   G +  ++++F+ ++ 
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQ-LVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N   +  I++     G+YE+T+ ++  M  + + P    +P V ++CS L ++  G+ +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCD------------------------GGFENEKGM 189
           +  ++ +GF+    V  ++++ +IKC                          G+   KG 
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY-TSKGE 271

Query: 190 IQRKFK---DLK--------SRWNSLISLAVQNGKSEKS--------------------- 217
            ++  K   D+K          WN++IS   Q+G+ E++                     
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 218 ------------FE---LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV-V 261
                       FE   +F+ M +EG + +S T+ + + +   L  L  GR +H   + V
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
            +   DL V  +L+  Y+K  S+E A+  F  +   D V WN M++ Y   G  +E++EL
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 322 LMCMVRSGFRADLF-----------------------------------TAIAAVSSIST 346
           L  M   G   D+                                    T   A+++   
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQ 511

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           ++N++ GK++H  VLRN  +    V ++LI MY  C+ L  A  +F  + T+ VV W+S+
Sbjct: 512 VRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSI 571

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I       +S+ AL L  EM L  VEV+ VT+++ LPAC  + AL   K +H + ++ GL
Sbjct: 572 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGL 631

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           ++ + +  ++   Y +CG I+ +  +FD   +  +D+++WN MIS Y  HG       L+
Sbjct: 632 DTCNFILNSLIDMYGRCGSIQKSRRIFD--LMPQRDLVSWNVMISVYGMHGFGMDAVNLF 689

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            Q +   ++P+ ITF  LL+AC ++GL+EEG   FK MK  Y  +P+ E YA MV+LL R
Sbjct: 690 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 749

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG  +E  E ++ MPF+P+A VWG LL AC++H   +LAE  A  L  +EP+++GNYVL+
Sbjct: 750 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 809

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +NIY+AAG+W   AK+R  +++RG+ K PGCSWIE+ + +H F   D SHP  + I   +
Sbjct: 810 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKM 869

Query: 707 GILELEIME 715
             L  +I E
Sbjct: 870 ESLYFDIKE 878



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/526 (25%), Positives = 241/526 (45%), Gaps = 54/526 (10%)

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           NL  L+ ++Q     +   S+    +L N +         ++   M L +     + Y  
Sbjct: 44  NLRKLTNARQRITGFSGGGSVHRNGVLNNAA---------MLLSSMDLTNPDECIEIYAS 94

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           +++ C  L +   G ++HAQ+V  G D  + +G  L+E Y +  G  E+ + M  +  + 
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ-TGCVEDARRMFDKMSER 153

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               W +++ +    G  E++ +LF LM  EG   D      + ++  ELK+  +G+ V+
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              +   F  +  V  ++L M+ K   ++ A+  F+++  KD  +WNIM+S Y   G  K
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           ++L+ +  M  SG + D                + W                    N++I
Sbjct: 274 KALKCISDMKLSGVKPD---------------QVTW--------------------NAII 298

Query: 377 DMYCECEDLNCARKIFDSVK-----TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             Y +      A K F  +         VVSW+++I G   +    EAL +F +M LEGV
Sbjct: 299 SGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAG 490
           + + +TI + + AC N+  L H + +HGY +K+  L+S   V  ++   YAKC  +E+A 
Sbjct: 359 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVAR 418

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
             F    I   D+++WN+M++ YA  G   +  +L ++MK   + PD+IT+ GL+T    
Sbjct: 419 RKFG--MIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
            G  +     F+ M  S G +P+    +  +   G+  ++   +E+
Sbjct: 477 YGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEI 521


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/670 (33%), Positives = 386/670 (57%), Gaps = 19/670 (2%)

Query: 34  HSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           H+F  +L  C +   +Q   +IH     L G   ++ + + L+  Y N G L   ++VF+
Sbjct: 8   HTFPFVLKACADSLSVQKGREIHGVVFKL-GFDSDVFVGNTLLLFYGNCGGLKDVKRVFD 66

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY-PAEDTYPFVIRSCSCLLDFI 148
            +   + + + +++   S  G Y + + ++ +M L+S + P   +   V+  C+ L D +
Sbjct: 67  EMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGV 126

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSL 204
           +G +IH  VVK G DS   VG+ALV+ Y KC  G+  +    +R F ++  R    WN++
Sbjct: 127 TGRQIHCYVVKTGLDSQVTVGNALVDVYGKC--GYVKDS---RRVFDEISERNGVSWNAI 181

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I+      +++ + E+F+LM   G + +S T  ++L   VELK  + G+ +H  ++    
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ V  AL+ MY+K      A  +F+++ +K+ V WN M++ + Q+     +++L+  
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQ 301

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M   G   +  T    + + + +  +  GK++HA  +R GS   + V N+L DMY +C  
Sbjct: 302 MQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGC 361

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           LN AR++F  +  +  VS++ +I GY       E+LRLF EM ++G+++D V+ + ++ A
Sbjct: 362 LNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISA 420

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N+ AL+  K +HG +++  L++   +  A+   Y KCG I++AG++F   +I S+D  
Sbjct: 421 CANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVF--RQIPSRDTA 478

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WNSMI  Y   G+ +    L+  MK+  V  D ++++ +L+AC + GLVEEG+  F+ M
Sbjct: 479 SWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM 538

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           +     +P+Q HYA MV+LLGRAG ++EA +L++ +P +PDA VWG LL AC++H   EL
Sbjct: 539 QVQ-NIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIEL 597

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           A   AE L  ++P+++G Y +LSN+YA AGKW+   ++R  ++ RG KK PGCSW++I  
Sbjct: 598 AHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDN 657

Query: 685 LVHEFWAADQ 694
            VH F A ++
Sbjct: 658 QVHAFVAGER 667



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 270/506 (53%), Gaps = 27/506 (5%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           + T+PFV+++C+  L    G +IH  V KLGFDS   VG+ L+ FY  C GG ++    +
Sbjct: 7   DHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNC-GGLKD----V 61

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVE 245
           +R F ++  R    WNS+I +   +G   ++  LF  M +  G   +  +++++L     
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L+    GR +HC  V +     ++V  AL+ +Y K   ++D++ +FD++S+++ V WN +
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I++       +++LE+   M+  G + +  T  + +  +  +K  ++GK++H   LR G 
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           +  + V N+LIDMY +      A  +F+ +  K +VSW++M+  +  +   L A+ L  +
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQ 301

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+ +G   + VT  N+LPAC  IG L   K +H  +++ G +    V+ A+   YAKCGC
Sbjct: 302 MQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGC 361

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           + +A  +F   KI  +D +++N +I  Y++  + S+  +L+ +M    ++ D+++++G++
Sbjct: 362 LNLARRVF---KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVI 418

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA------SMVNLLGRAGHMDEARELVKD 599
           +AC N   +++G       KE +G    +  +       ++++   + G +D A ++ + 
Sbjct: 419 SACANLAALKQG-------KEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQ 471

Query: 600 MPFKPDARVWGPLLSACKMHSETELA 625
           +P + D   W  ++    M  E  +A
Sbjct: 472 IPSR-DTASWNSMILGYGMLGELTIA 496



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 182/334 (54%), Gaps = 3/334 (0%)

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   D  T   +L++  +  S++ GR +H V     F  D+ V   LL  Y     L+D 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAAVSSIST 346
           K +FD+M ++D V WN +I  +   GF  E++ L   M +RSGFR ++ + ++ +   + 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +++   G+Q+H  V++ G D QV+V N+L+D+Y +C  +  +R++FD +  +  VSW+++
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I      +++ +AL +F  M   GV+ + VT  ++LP  V +   +  K +HG+S++ GL
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            S   V  A+   YAK G    A  +F++  I  K+I++WN+M++ +A++        L 
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQ--IGEKNIVSWNAMVANFAQNRLELAAVDLV 299

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            QM+     P+ +TF  +L AC   G +  G+ I
Sbjct: 300 RQMQADGEIPNSVTFTNVLPACARIGFLRPGKEI 333


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 347/583 (59%), Gaps = 6/583 (1%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           V++ C CL D I G+++H Q +K GF     VG +LV+ Y+K +   + E+   + + K+
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           + S W SL++   QNG +E++ +LF  M++EG + +  T   +L       ++E G  VH
Sbjct: 158 VVS-WTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + + S     + V  ++++MYSK   + DAK +FD M +++ V WN MI+ +  +G   
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL 276

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+ EL   M   G +         +   + +K + + KQ+H  V++NGSD+ +++  +L+
Sbjct: 277 EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALM 336

Query: 377 DMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVD 434
             Y +C +++ A K+F  +   + VVSW+++I GYV + ++  A+ LF +M+ E GVE +
Sbjct: 337 VAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPN 396

Query: 435 FVTIINILPACVN-IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
             T  ++L AC     ++E  K  H  S+K G ++   V++A+   YAK G IE A E+F
Sbjct: 397 EFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVF 456

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
            + ++D +D+++WNSMIS YA+HG   +  K++ +M+  ++  D ITF+G+++AC +AGL
Sbjct: 457 -KRQVD-RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGL 514

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V EG+  F  M + Y   P+ EHY+ MV+L  RAG +++A +L+  MPF   A +W  LL
Sbjct: 515 VNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLL 574

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
           +AC++H   +L EL AEKLIS++P+++  YVLLSNIYA AG W   AK+R  +  + +KK
Sbjct: 575 AACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKK 634

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
             G SWIE+      F A D SHPQ+D IY  L  L + + + 
Sbjct: 635 EAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDA 677



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 241/478 (50%), Gaps = 19/478 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + I   G  +++ + ++L+D Y     +   ++VF+ +   N + + ++L    +
Sbjct: 112 KQVHCQCIKC-GFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L ++ QM L+ + P   T+  V+   +       G ++H  V+K G DS   V
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G+++V  Y K      + K +    F  +++R    WNS+I+  V NG   ++FELF  M
Sbjct: 231 GNSMVNMYSK-SLMVSDAKAV----FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLA 282
           R+EG +        +++    +K +   + +HC  +   SDF  DL++ TAL+  YSK +
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF--DLNIKTALMVAYSKCS 343

Query: 283 SLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVR-SGFRADLFTAIAA 340
            ++DA  LF  M     VV W  +IS Y Q+G    ++ L   M R  G   + FT  + 
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSV 403

Query: 341 VSSIST-MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
           +++ +    ++E GKQ H+  +++G    + V ++L+ MY +  ++  A ++F     + 
Sbjct: 404 LNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRD 463

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLH 458
           +VSW+SMI GY  H    ++L++F EM+ + +E+D +T I ++ AC + G + E  +Y  
Sbjct: 464 LVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFD 523

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
                  +       + +   Y++ G +E A +L ++    +   I W ++++A   H
Sbjct: 524 LMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATI-WRTLLAACRVH 580


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/665 (33%), Positives = 377/665 (56%), Gaps = 18/665 (2%)

Query: 30  MTATHSF-SLLNLCENPQHL---QQIHARYIILHGL---HQNLILSSNLIDSYANLGLLS 82
           +TAT  + SLL  C + + +   +QIHA  I L  L   + + +LSS L  +YA  G   
Sbjct: 15  LTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSS-LAAAYAMFGCAP 73

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFG-EYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
            ++++F+ + +P+   +  +++  +  G  Y+   L  + +A    +P   TYPFVI++C
Sbjct: 74  HARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKAC 133

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR- 200
              L    G  IHA+ V  GFDS   V ++L+  Y+ C      E  + +R F  ++ R 
Sbjct: 134 GDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNC-----GEMEVARRVFDLMRERT 188

Query: 201 ---WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              WN++I+   +NG  +++  +F  M  +G E D  T++++L     LK LE+GR VH 
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA 248

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           +  V +  +D+SV  +LL MY+K  ++++A+M+F +M  +D V W  M++ Y  +G  + 
Sbjct: 249 LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARS 308

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +L L   M     + +  T  + +S+ +++ +++ G+ +H   +R   + +V V  +LID
Sbjct: 309 ALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALID 368

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY +C ++N + ++F     +    W+++I G + +  S +A+ LF +M +E V+ +  T
Sbjct: 369 MYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDAT 428

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + ++LPA   +  L+  + +HGY ++ G  S   V T +   Y+KCG +E A  +F+   
Sbjct: 429 LNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIP 488

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
              KDIITW+++I+ Y  HG       L+ QM QS V+P+ ITF  +L AC +AGLV+EG
Sbjct: 489 KKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEG 548

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
             +FK M E        +HY  +++LLGRAG ++EA EL++ M F+P+  VWG LL +C 
Sbjct: 549 LGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCV 608

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H   EL E+ A+ L  +EP N GNYVLL+NIY+A G+W     +R  + + GL+KTP  
Sbjct: 609 IHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAH 668

Query: 678 SWIEI 682
           S IE+
Sbjct: 669 SLIEV 673


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/710 (31%), Positives = 390/710 (54%), Gaps = 17/710 (2%)

Query: 3   GLLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCE---NPQHLQQIHARYIILH 59
           GL   A SL S   +    P   T P        S++N C    + +  + IH R + + 
Sbjct: 94  GLFSEALSLYSETQRIRLQPDTYTFP--------SVINACAGLLDFEMAKSIHDRVLDM- 144

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +L + + LID Y     L  +++VF  +   + + + +++   +  G + + L +Y
Sbjct: 145 GFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY 204

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +     + P   T   V+R+C  L     G+ IH  + K+G      V + L+  Y K 
Sbjct: 205 YRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKF 264

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +G  +  +   +   +D  S WN++I    Q G  E+S +LF  M +   + D  T+ ++
Sbjct: 265 NGLIDGRRIFDKMVLRDAVS-WNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSI 322

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L++   L  LE G+ VH   + S +  D + +  L++MY+K  +L  ++ +F  M  KD 
Sbjct: 323 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 382

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN MI+ Y Q+G   E+++L   M+++  + D  T +  +S  + + ++  GK++H +
Sbjct: 383 VSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCD 441

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           + + G +  + V N+L+DMY +C ++  + K+F+++K + +++W+++I   V  +     
Sbjct: 442 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 501

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           LR+ S M+ EGV  D  T+++ILP C  + A    K +HG   KLGL S   V   +   
Sbjct: 502 LRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 561

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG +  + ++F   K  +KD++TW ++ISA   +G+  +  + + +M+ + + PD +
Sbjct: 562 YSKCGSLRNSFQVFKLMK--TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHV 619

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
            F+ ++ AC ++GLVEEG   F  MK+ Y  EP  EHYA +V+LL R+  +D+A + +  
Sbjct: 620 AFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILS 679

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPD+ +WG LLSAC+M  +TE+AE  +E++I + P++ G YVL+SNIYAA GKW+ V
Sbjct: 680 MPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQV 739

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
             +R  ++ RGLKK PGCSW+EI   V+ F    +   Q + +  +LG+L
Sbjct: 740 RSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGML 789



 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 199/616 (32%), Positives = 323/616 (52%), Gaps = 20/616 (3%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSY 75
           +K LR     +R  + ++ S +L +     Q L ++H+  I L GLH ++I S+ LI  Y
Sbjct: 1   MKTLRVLHECSRQTLFSSISRALASAATTTQ-LHKLHSLIITL-GLHHSVIFSAKLIAKY 58

Query: 76  ANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           A+    + S  VF  + SP  N  L+ +I++ L+  G + + L +Y +     + P   T
Sbjct: 59  AHFRDPTSSFSVFR-LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           +P VI +C+ LLDF   + IH +V+ +GF S   +G+AL++ Y + +   +  K   +  
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S WNSLIS    NG   ++ E++   R  G   DS T+ ++LR+   L S+E G 
Sbjct: 178 LRDVVS-WNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGD 236

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           I+H +       KD+ VN  LLSMY K   L D + +FDKM  +D V WN MI  Y Q G
Sbjct: 237 IIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 296

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             +ES++L M MV   F+ DL T  + + +   + ++E+GK +H  ++ +G +   +  N
Sbjct: 297 LYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 355

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
            LI+MY +C +L  ++++F  +K K  VSW+SMI  Y+ +    EA++LF  MK + V+ 
Sbjct: 356 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKP 414

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D VT + +L     +G L   K LH    K+G NS   V+  +   YAKCG  EM   L 
Sbjct: 415 DSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG--EMGDSLK 472

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E + ++DIITWN++I++     D +   ++ ++M+   V PD+ T L +L  C     
Sbjct: 473 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAA 532

Query: 554 VEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
             +G+     IFK      G E        ++ +  + G +  + ++ K M  K D   W
Sbjct: 533 KRQGKEIHGCIFK-----LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTW 586

Query: 610 GPLLSACKMHSETELA 625
             L+SAC M+ E + A
Sbjct: 587 TALISACGMYGEGKKA 602


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/678 (31%), Positives = 375/678 (55%), Gaps = 8/678 (1%)

Query: 30  MTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           M   ++FS +L+ C+  + L+   Q+H   + L G   +  + + L+  Y +LG L  ++
Sbjct: 268 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGSLISAE 326

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            +F++++  +++ Y T++  LS+ G  EK + ++K+M L  + P  +T   ++ +CS   
Sbjct: 327 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
              SG+++HA   KLGF S D +  AL+  Y KC          ++ + +++   WN ++
Sbjct: 387 TLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENV-VLWNVML 445

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
                      SF +F+ M++E    +  T  ++L++ + L  LELG  +H   + + F 
Sbjct: 446 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQ 505

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  V + L+ MY+KL  L+ A  +  + + KD V W  MI+ Y Q  F  ++L     M
Sbjct: 506 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 565

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           +  G R+D      AVS+ + ++ ++ G+Q+HA    +G    +   N+L+ +Y +C ++
Sbjct: 566 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNI 625

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A   F+  +    ++W++++ G+     + EALR+F+ M  EG++ +  T  + + A 
Sbjct: 626 EEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAA 685

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
                ++  K +H    K G +S + V  AI   YAKCG I  A + F E  +  K+ ++
Sbjct: 686 SETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLE--LSMKNEVS 743

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN+MI+AY+KHG  S+    + QM  S+VRP+ +T +G+L+AC + GLV++G   F+ M 
Sbjct: 744 WNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMN 803

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             YG  P  EHY  +V++L RAG +  A++ + +MP +PDA VW  LLSAC +H   E+ 
Sbjct: 804 TEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIG 863

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           E  A  L+ +EPE++  YVLLSN+YA   KW+     R  ++++G+KK PG SWIE+   
Sbjct: 864 EFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 923

Query: 686 VHEFWAADQSHPQADAIY 703
           +H F+  DQ+HP AD I+
Sbjct: 924 IHSFYVGDQNHPLADEIH 941



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 148/612 (24%), Positives = 288/612 (47%), Gaps = 12/612 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H++ + L G   N  LS  L+D Y   G L  + +VF+ +       +  ++K L+ 
Sbjct: 88  RKLHSQILKL-GFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELAS 146

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSF 165
                K   ++ +M  +++ P E T+  V+ +C   S   D +  E+IHA+++  G    
Sbjct: 147 RSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVV--EQIHARIIYQGLGKS 204

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V + L++ Y + +G  +  + +    +    S W ++IS   +N    ++  LF  M 
Sbjct: 205 TIVCNPLIDLYSR-NGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMY 263

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           + G         ++L +  +++SLE+G  +H + +   F  D  V  AL+S+Y  L SL 
Sbjct: 264 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLI 323

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A+ +F  MS +D V +N +I+   Q G+ ++++EL   M   G   D  T  + V + S
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           +   +  G+Q+HA   + G      +  +L+++Y +C D+  A   F   + + VV W+ 
Sbjct: 384 SDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNV 443

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           M+  Y   D    + R+F +M++E +  +  T  +IL  C+ +G LE  + +H   +K  
Sbjct: 444 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTS 503

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
               + V + +   YAK G ++ A ++    +   KD+++W +MI+ Y ++    +    
Sbjct: 504 FQLNAYVCSVLIDMYAKLGKLDTAWDILI--RFAGKDVVSWTTMIAGYTQYNFDDKALTT 561

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + QM    +R D +     ++AC     ++EG+ I  +   S G+        ++V L  
Sbjct: 562 FRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALVTLYS 620

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           + G+++EA  L  +     D   W  L+S  +     E A L     ++ E  ++ N+  
Sbjct: 621 KCGNIEEAY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA-LRVFARMNREGIDSNNFTF 678

Query: 646 LSNIYAAAGKWN 657
            S + AA+   N
Sbjct: 679 GSAVKAASETAN 690



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 238/492 (48%), Gaps = 20/492 (4%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLI 205
           G K+H+Q++KLGFD+   + + L++FY+     F+ +     + F ++  R    WN +I
Sbjct: 87  GRKLHSQILKLGFDNNACLSEKLLDFYL-----FKGDLDGALKVFDEMPERTIFTWNKMI 141

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS----TVELKSLELGRIVHCVAVV 261
                   S K F LF  M  E    + GT   +L +    +V    +E    +H   + 
Sbjct: 142 KELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQ---IHARIIY 198

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
               K   V   L+ +YS+   ++ A+ +FD +  KD   W  MIS   ++    E++ L
Sbjct: 199 QGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRL 258

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M   G     +   + +S+   ++++E G+Q+H  VL+ G      V N+L+ +Y  
Sbjct: 259 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 318

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              L  A  IF ++  +  V+++++I G        +A+ LF  M+L+G+E D  T+ ++
Sbjct: 319 LGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASL 378

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           + AC + G L   + LH Y+ KLG  S   +  A+   YAKC  IE A   F E +++  
Sbjct: 379 VVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVE-- 436

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           +++ WN M+ AY    D    F+++ QM+  ++ P+  T+  +L  C+  G +E G  I 
Sbjct: 437 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH 496

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            ++ ++  ++ +    + ++++  + G +D A +++     K D   W  +++    ++ 
Sbjct: 497 SQIIKT-SFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNF 554

Query: 622 TELAELTAEKLI 633
            + A  T  +++
Sbjct: 555 DDKALTTFRQML 566



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 162/348 (46%), Gaps = 6/348 (1%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           SL+ GR +H   +   F  +  ++  LL  Y     L+ A  +FD+M ++    WN MI 
Sbjct: 83  SLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIK 142

Query: 308 AYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
                    +   L   MV      +   F+ +       ++   +  +Q+HA ++  G 
Sbjct: 143 ELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVA-FDVVEQIHARIIYQGL 201

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
                V N LID+Y     ++ AR++FD +  K   SW +MI G   ++  +EA+RLF +
Sbjct: 202 GKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCD 261

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M + G+        ++L AC  I +LE  + LHG  +KLG +S + V  A+   Y   G 
Sbjct: 262 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGS 321

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  +F    +  +D +T+N++I+  ++ G   +  +L+ +M+   + PD  T   L+
Sbjct: 322 LISAEHIF--SNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLV 379

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            AC + G +  G+ +        G+  + +   +++NL  +   ++ A
Sbjct: 380 VACSSDGTLFSGQQL-HAYTTKLGFASNDKIEGALLNLYAKCSDIETA 426



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 136/307 (44%), Gaps = 36/307 (11%)

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
           + T  +++ G+++H+ +L+ G D    +   L+D Y    DL+ A K+FD +  +T+ +W
Sbjct: 78  LKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTW 137

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSM 462
           + MIK   +   S +   LF  M  E V  +  T   +L AC     A + V+ +H   +
Sbjct: 138 NKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARII 197

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
             GL   + V   +   Y++ G ++ A  +FD   +  KD  +W +MIS  +K+    + 
Sbjct: 198 YQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYL--KDHSSWVAMISGLSKNECEVEA 255

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM------KESY-------- 568
            +L+  M    + P    F  +L+AC     +E G  +   +       ++Y        
Sbjct: 256 IRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSL 315

Query: 569 ----GYEPSQEH------------YASMVNLLGRAGHMDEARELVKDMP---FKPDARVW 609
               G   S EH            Y +++N L + G+ ++A EL K M     +PD+   
Sbjct: 316 YFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTL 375

Query: 610 GPLLSAC 616
             L+ AC
Sbjct: 376 ASLVVAC 382


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/678 (34%), Positives = 370/678 (54%), Gaps = 10/678 (1%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C N + L+Q   IH + + L GL  ++ L  NLI+ Y +  L   ++ VF+++ +P
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTL-GLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENP 67

Query: 95  NSL-LYGTILKNLSKFGEYEKTL-LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + L+  ++   +K   Y + L L  K +    + P   TYP V+++C  L  ++ G+ 
Sbjct: 68  CEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKM 127

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH  +VK G      VG +LV  Y KC+  FE    +     +   + WN++IS   Q+G
Sbjct: 128 IHTCLVKTGLMMDIVVGSSLVGMYAKCNA-FEKAIWLFNEMPEKDVACWNTVISCYYQSG 186

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             +++ E F LMR  G E +S T+   + S   L  L  G  +H   + S F  D  +++
Sbjct: 187 NFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISS 246

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+ MY K   LE A  +F++M  K  V WN MIS Y   G     ++L   M   G + 
Sbjct: 247 ALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKP 306

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
            L T  + +   S    +  GK +H   +RN     V +++SL+D+Y +C  +  A  IF
Sbjct: 307 TLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIF 366

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +    VVSW+ MI GYV   +  EAL LFSEM+   VE D +T  ++L AC  + ALE
Sbjct: 367 KLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALE 426

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +H   ++  L++   V  A+   YAKCG ++ A  +F  + +  +D+++W SMI+A
Sbjct: 427 KGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVF--KCLPKRDLVSWTSMITA 484

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y  HG      +L+ +M QS+++PD +TFL +L+AC +AGLV+EG   F +M   YG  P
Sbjct: 485 YGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIP 544

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAELTAEK 631
             EHY+ +++LLGRAG + EA E+++  P  + D  +   L SAC++H   +L    A  
Sbjct: 545 RVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIART 604

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           LI  +P+++  Y+LLSN+YA+A KW+ V  +R+ +++ GLKK PGCSWIEI + +  F+ 
Sbjct: 605 LIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFV 664

Query: 692 ADQSHPQADAIYTILGIL 709
            D SH   + ++  L  L
Sbjct: 665 EDNSHLHLELVFKCLSYL 682



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 188/392 (47%), Gaps = 18/392 (4%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+  L+ LLR+ +  KSL+ G+++H   V      D+ +   L+++Y      + AK +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 292 DKMSDKDRV-VWNIMISAYYQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMKN 349
           D M +   + +WN +++ Y ++    E+LEL   ++   + + D +T  + + +   +  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
              GK +H  +++ G    + V +SL+ MY +C     A  +F+ +  K V  W+++I  
Sbjct: 122 YVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y       EAL  F  M+  G E + VTI   + +C  +  L     +H   +  G    
Sbjct: 182 YYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           S +++A+   Y KCG +EMA E+F  E++  K ++ WNSMIS Y   GD   C +L+ +M
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEVF--EQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRM 299

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY------ASMVNL 583
               V+P L T   L+  C  +  + EG+ +       +GY             +S+++L
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFV-------HGYTIRNRIQSDVFINSSLMDL 352

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
             + G ++ A  + K +P K     W  ++S 
Sbjct: 353 YFKCGKVELAENIFKLIP-KSKVVSWNVMISG 383



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 4/184 (2%)

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           +D   ++ +L AC+N  +L+  K +H   + LGL +   +   +   Y  C   + A  +
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNA 551
           FD  + +  +I  WN +++ Y K+  + +  +L+ ++     ++PD  T+  +L AC   
Sbjct: 61  FDNME-NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGL 119

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
                G++I   + ++ G        +S+V +  +    ++A  L  +MP K D   W  
Sbjct: 120 YKYVLGKMIHTCLVKT-GLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEK-DVACWNT 177

Query: 612 LLSA 615
           ++S 
Sbjct: 178 VISC 181


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 346/636 (54%), Gaps = 30/636 (4%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + +I +YAN G L+ ++++F      + + + +++    ++G   + L ++ +M  +   
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T+  V+R CS  +    G++IHA  +K  FDS   V   LV+ Y KC    E E  
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
                 K     W ++++   QNG   K+ E F+ MR EG E +  T  ++L +   + +
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
              G  VH   V S F  ++ V +AL+ MYSK   L +A+ + + M   D V WN MI  
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
             + G  +E+L L   M     + D FT  + ++  S + ++     +H+ +++ G +  
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAY 375

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             V+N+L+DMY +    + A  +F+ +  K V+SW+S++ G V +    EALRLF EM++
Sbjct: 376 KLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 435

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G+  D + I  +L AC  +  LE  K +H   +K GL S  SV+ ++   YAKCGCIE 
Sbjct: 436 MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 495

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A ++FD  +I  +D+ITW ++I  YA++G            +  D               
Sbjct: 496 ANKVFDSMEI--QDVITWTALIVGYAQNG------------RGRD--------------- 526

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +AGLVE GR  F+ M+E YG +P  EHYA M++LLGR+G + EA+EL+  M  +PDA V
Sbjct: 527 -HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATV 585

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           W  LL+AC++H   EL E  A  L  +EP+NA  YVLLSN+Y+AAGKW   AK R  ++ 
Sbjct: 586 WKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKL 645

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           RG+ K PGCSWIE+   VH F + D+SHP+   IY+
Sbjct: 646 RGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYS 681



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 148/274 (54%), Gaps = 4/274 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   I+  G   N+ + S L+D Y+  G LS ++++  ++   + + + +++    + 
Sbjct: 261 QVHG-CIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQ 319

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G  E+ L +++ M L+ M   E TYP V+   S ++D  +   +H+ +VK GF+++  V 
Sbjct: 320 GLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVN 379

Query: 170 DALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           +ALV+ Y K  G F+    + ++   KD+ S W SL++  V NG  E++  LF  MR+ G
Sbjct: 380 NALVDMYAK-RGYFDYAFDVFEKMTDKDVIS-WTSLVTGCVHNGSYEEALRLFCEMRIMG 437

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D   +  +L +  EL  LE G+ VH   + S     LSV+ +L+SMY+K   +EDA 
Sbjct: 438 IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 497

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            +FD M  +D + W  +I  Y Q+G  ++   L+
Sbjct: 498 KVFDSMEIQDVITWTALIVGYAQNGRGRDHAGLV 531



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 174/384 (45%), Gaps = 36/384 (9%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS--------------------- 312
           +LS  SK   ++DA+ LFD M D+D   WN MI AY  S                     
Sbjct: 47  VLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITW 106

Query: 313 ----------GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
                     G   E+LEL   M   G R + FT  + +   S    +E GKQ+HA+ ++
Sbjct: 107 SSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIK 166

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKGYVTHDQSLEALR 421
              D    V   L+DMY +C+ +  A  +F+ +   +  V W++M+ GY  +    +A+ 
Sbjct: 167 TQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIE 226

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F +M+ EG+E +  T  +IL AC +I A      +HG  ++ G  +   V +A+   Y+
Sbjct: 227 CFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYS 286

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  A  + +  ++D  D ++WNSMI    + G   +   L+  M    ++ D  T+
Sbjct: 287 KCGDLSNARRMLETMEVD--DPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             +L  C +  +     +    +    G+E  +    ++V++  + G+ D A ++ + M 
Sbjct: 345 PSVLN-CFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT 403

Query: 602 FKPDARVWGPLLSACKMHSETELA 625
            K D   W  L++ C  +   E A
Sbjct: 404 DK-DVISWTSLVTGCVHNGSYEEA 426



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 107/228 (46%), Gaps = 21/228 (9%)

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTA-----IFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
           LEH +  H   ++  +NS  +V+++     +  + +KCG ++ A +LFD   +  +D  +
Sbjct: 19  LEHTELNH--HIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFD--VMPDRDECS 74

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN+MI AYA  G  ++  KL+    ++ +R   IT+  L++     G   E   +F EM+
Sbjct: 75  WNTMIGAYANSGRLNEARKLFY---ETPIR-SCITWSSLISGYCRYGCDVEALELFWEMQ 130

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEAREL---VKDMPFKPDARVWGPLLSACKMHSET 622
              G  P+Q  + S++ +      +++ +++        F  +A V   L+    M+++ 
Sbjct: 131 YE-GERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVD---MYAKC 186

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
           +   L AE L  + P+   + +  + +   +   +G   +  F   RG
Sbjct: 187 KCI-LEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRG 233


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/665 (33%), Positives = 377/665 (56%), Gaps = 18/665 (2%)

Query: 30  MTATHSF-SLLNLCENPQHL---QQIHARYIILHGL---HQNLILSSNLIDSYANLGLLS 82
           +TAT  + SLL  C + + +   +QIHA  I L  L   + + +LSS L  +YA  G   
Sbjct: 15  LTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSS-LAAAYAMCGCAP 73

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFG-EYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
            ++++F+ + +P+   +  +++  +  G  Y+   L  + +A    +P   TYPFVI++C
Sbjct: 74  HARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKAC 133

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR- 200
              L    G  IHA+ V  GFDS   V ++L+  Y+ C      E  + +R F  ++ R 
Sbjct: 134 GDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNC-----GEMEVARRVFDLMRERT 188

Query: 201 ---WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              WN++I+   +NG  +++  +F  M  +G E D  T++++L     LK LE+GR VH 
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA 248

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           +  V +  +D+SV  +LL MY+K  ++++A+M+F +M  +D V W  M++ Y  +G  + 
Sbjct: 249 LVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARS 308

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +L L   M     + +  T  + +S+ +++ +++ G+ +H   +R   + +V V  +LID
Sbjct: 309 ALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALID 368

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY +C ++N + ++F     +    W+++I G + +  S +A+ LF +M +E V+ +  T
Sbjct: 369 MYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDAT 428

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + ++LPA   +  L+  + +HGY ++ G  S   V T +   Y+KCG +E A  +F+   
Sbjct: 429 LNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIP 488

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
              KDIITW+++I+ Y  HG       L+ QM QS V+P+ ITF  +L AC +AGLV+EG
Sbjct: 489 KKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEG 548

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
             +FK M E        +HY  +++LLGRAG ++EA EL++ M F+P+  VWG LL +C 
Sbjct: 549 LGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCV 608

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H   EL E+ A+ L  +EP N GNYVLL+NIY+A G+W     +R  + + GL+KTP  
Sbjct: 609 IHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAH 668

Query: 678 SWIEI 682
           S IE+
Sbjct: 669 SLIEV 673


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/679 (31%), Positives = 371/679 (54%), Gaps = 7/679 (1%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + L    QIHA   +  GL  ++   S L+D Y     L  + + F+ +   
Sbjct: 142 LLKACGGLEDLALGVQIHA-VAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGER 200

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           NS+ +G  +    +  +Y + L ++ QM    +  ++  Y  V RSC+ +    +  ++H
Sbjct: 201 NSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLH 260

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F +   VG A+V+ Y K D   +  +         +++  N+++   V+ G  
Sbjct: 261 AHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQA-CNAMMVGLVRTGLG 319

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            ++ +LF+ M   G  FD  +L  +  +  E+K    G  VHC+A+ S F  D+ V  A+
Sbjct: 320 AEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAI 379

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L +Y K  +L +A ++F +M  +D V WN +I+A  Q+   ++++  L  M+R G   D 
Sbjct: 380 LDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDD 439

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT  + + + + ++++E+G  +H   +++G      V ++++DMYC+C  +  A+K+ D 
Sbjct: 440 FTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDR 499

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  + +VSW+S+I G+  + QS EA + FSEM   GV+ D  T   +L  C N+  +E  
Sbjct: 500 IGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELG 559

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K +HG  +K  +     +++ +   YAKCG   M   L   EK    D ++WN+MI  YA
Sbjct: 560 KQIHGQIIKQEMLGDEYISSTLVDMYAKCG--NMPDSLLMFEKAQKLDFVSWNAMICGYA 617

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            HG   +  +++ +M+Q++V P+  TF+ +L AC + GL+++G   F  M   Y  EP  
Sbjct: 618 LHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQL 677

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EH+A MV++LGR+    EA + ++ MP + DA +W  LLS CK+  + E+AE  A  ++ 
Sbjct: 678 EHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLR 737

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++P+++  Y+LLSN+YA +GKW  V++ R  +R   LKK PGCSWIE+   +H F A D+
Sbjct: 738 LDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDK 797

Query: 695 SHPQADAIYTILGILELEI 713
            HP++  +Y +L  L +E+
Sbjct: 798 VHPRSREVYEMLNNLIVEM 816



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/575 (25%), Positives = 283/575 (49%), Gaps = 15/575 (2%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HAR +     H++ +  + ++ +YA+ G    +  +F ++  P+ + +  +L    + G 
Sbjct: 57  HARGVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGM 116

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           +  ++ +  +MA + + P   T   ++++C  L D   G +IHA  VK G +     G A
Sbjct: 117 FRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSA 176

Query: 172 LVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           LV+ Y KC   +       GM +R        W + I+  VQN +  +  ELF  M+  G
Sbjct: 177 LVDMYGKCRSLEDALRFFHGMGERN----SVSWGAAIAGCVQNEQYTRGLELFVQMQRLG 232

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                    ++ RS   +  L   R +H  A+ + F  D  V TA++ +Y+K  SL DA+
Sbjct: 233 LGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDAR 292

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
             F  + +      N M+    ++G   E+L+L   M RSG   D+ +     S+ + +K
Sbjct: 293 RAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVK 352

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
               G Q+H   +++G D  V V N+++D+Y +C+ L  A  +F  ++ +  VSW+++I 
Sbjct: 353 GYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIA 412

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
               ++   + +   +EM   G+E D  T  ++L AC  + +LE+   +HG ++K GL  
Sbjct: 413 ALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGL 472

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            + V++ +   Y KCG I  A +L D  +I  +++++WNS+IS ++ +    +  K +++
Sbjct: 473 DAFVSSTVVDMYCKCGMITEAQKLHD--RIGGQELVSWNSIISGFSLNKQSEEAQKFFSE 530

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM--KESYGYEPSQEHYASMVNLLGR 586
           M    V+PD  T+  +L  C N   +E G+ I  ++  +E  G E      +++V++  +
Sbjct: 531 MLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYIS---STLVDMYAK 587

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            G+M ++  L+ +   K D   W  ++    +H +
Sbjct: 588 CGNMPDSL-LMFEKAQKLDFVSWNAMICGYALHGQ 621



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 234/516 (45%), Gaps = 50/516 (9%)

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKS-------- 199
           +G+  HA+++  GF     V + L++ Y +C GG  + +G+      +D  S        
Sbjct: 22  TGQAAHARMLVSGFMPTTFVSNCLLQMYARC-GGAAHARGVFDVMPHRDTVSWNTMLTAY 80

Query: 200 ----------------------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
                                  WN+L+S   Q G    S  L   M   G   D  TL 
Sbjct: 81  AHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLA 140

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            LL++   L+ L LG  +H VAV +    D+   +AL+ MY K  SLEDA   F  M ++
Sbjct: 141 VLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGER 200

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGF------RADLFTAIAAVSSISTMKNIE 351
           + V W   I+   Q+      LEL + M R G        A +F + AA++ +ST     
Sbjct: 201 NSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLST----- 255

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
             +Q+HA+ ++N       V  +++D+Y + + L  AR+ F S+   TV + ++M+ G V
Sbjct: 256 -ARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLV 314

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 EAL+LF  M   G+  D V++  +  AC  +        +H  ++K G +    
Sbjct: 315 RTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVC 374

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  AI   Y KC  +  A  +F E  ++ +D ++WN++I+A  ++  +        +M +
Sbjct: 375 VRNAILDLYGKCKALVEAYLVFQE--MEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLR 432

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIF-KEMKESYGYEPSQEHYASMVNLLGRAGHM 590
             + PD  T+  +L AC     +E G ++  K +K   G +      +++V++  + G +
Sbjct: 433 YGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVDMYCKCGMI 490

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            EA++L  D     +   W  ++S   ++ ++E A+
Sbjct: 491 TEAQKL-HDRIGGQELVSWNSIISGFSLNKQSEEAQ 525



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 192/430 (44%), Gaps = 47/430 (10%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L  G+  H   +VS F     V+  LL MY++      A+ +FD M  +D V WN M++
Sbjct: 19  ALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLT 78

Query: 308 AYY-------------------------------QSGFPKESLELLMCMVRSGFRADLFT 336
           AY                                Q G  ++S+ L + M R G   D  T
Sbjct: 79  AYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTT 138

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               + +   ++++  G Q+HA  ++ G +  V   ++L+DMY +C  L  A + F  + 
Sbjct: 139 LAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMG 198

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            +  VSW + I G V ++Q    L LF +M+  G+ V      ++  +C  I  L   + 
Sbjct: 199 ERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQ 258

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK----IDSKDIITWNSMISA 512
           LH +++K   ++   V TAI   YAK      A  L D  +    + +  +   N+M+  
Sbjct: 259 LHAHAIKNKFSADRVVGTAIVDVYAK------ADSLVDARRAFFSLPNHTVQACNAMMVG 312

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA-GLVEEGRIIFKEMKESYGYE 571
             + G  ++  +L+  M +S +  D+++  G+ +AC    G ++  ++    +K  +  +
Sbjct: 313 LVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVD 372

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTA 629
               +  ++++L G+   + EA  + ++M  + D+  W  +++A + +   E  +A L  
Sbjct: 373 VCVRN--AILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQNECYEDTIAYLNE 429

Query: 630 EKLISMEPEN 639
                MEP++
Sbjct: 430 MLRYGMEPDD 439


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/631 (34%), Positives = 355/631 (56%), Gaps = 18/631 (2%)

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD-------FISGEKIHAQVVK 159
           S F + +   +V + ++++  +P +  YP     C  LL        F  G+++HA ++ 
Sbjct: 30  SHFSQGDVAQMVERSLSMRE-HPLQQ-YPLTSLQCGALLQSFTNTKSFKQGQQLHAHMIS 87

Query: 160 LG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR--WNSLISLAVQNGKSEK 216
               ++   +   L  FY  C  G  ++  +I      LK+   WN +I     NG   K
Sbjct: 88  FSILENNTYLNTKLAAFYAGC--GLMSQAEVIFDGIV-LKNSFLWNFMIRGYASNGLPMK 144

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           S  L++ M   G   D+ T   +L++  +L  +E+GR VH   VV     D+ V  +LL+
Sbjct: 145 SLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLA 204

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY+K   +  A+M+FD+M+++D   WN MIS Y ++     +  +   M ++G  AD  T
Sbjct: 205 MYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTT 264

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
            +  +S+ + +K ++ GK +H   +RN   +Y     NSLI+MYC C  +  AR++F+ V
Sbjct: 265 LLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERV 324

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + K  VSW+SMI GY  +  + E+LRLF  M L+G   D VT I +L AC  I AL +  
Sbjct: 325 RWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGM 384

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H Y +K G ++ + V TA+   Y+KCG +  +  +FDE  +  K +++W++M++ Y  
Sbjct: 385 SIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDE--MPDKSLVSWSAMVAGYGL 442

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   +   +   MK + V PD   F  +L+AC +AGLV EG+ IF +M++ Y  +P+  
Sbjct: 443 HGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALS 502

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY+ MV+LLGRAGH+DEA  +++ M  KP + +W  LL+A ++H   +LAE++A+K+  M
Sbjct: 503 HYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDM 562

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
            P+   +Y+ LSNIYAA  +W+ V ++R  +R +GLKK+PGCS+IE+  +VH F   D+S
Sbjct: 563 NPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKS 622

Query: 696 HPQADAIYTILGILELEIMEGRRESSEELKF 726
           H Q + IY  L  L+ ++ E   +    L F
Sbjct: 623 HQQTEDIYAKLNELKQQLKEAGYKPDTSLVF 653



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 215/404 (53%), Gaps = 6/404 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+HA  I    L  N  L++ L   YA  GL+S ++ +F+ I   NS L+  +++  + 
Sbjct: 79  QQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYAS 138

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   K+L++Y++M          TYPFV+++C  LL    G ++H++VV  G +S   V
Sbjct: 139 NGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYV 198

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G++L+  Y K  G     + +  R  +   + WN++IS   +N  S  +F +F LM   G
Sbjct: 199 GNSLLAMYAKF-GDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAG 257

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAV---VSDFCKDLSVNTALLSMYSKLASLE 285
              D  TL+ LL +  +LK+++ G+++H  AV   + ++ K  +   +L+ MY     + 
Sbjct: 258 LFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFT--NSLIEMYCNCNCMV 315

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DA+ LF+++  KD V WN MI  Y ++G   ESL L   M   G   D  T IA + +  
Sbjct: 316 DARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACD 375

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  + +G  +H+ +++ G D    V  +L+DMY +C  L C+R++FD +  K++VSWS+
Sbjct: 376 QIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSA 435

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           M+ GY  H +  EA+ +   MK   V  D     +IL AC + G
Sbjct: 436 MVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAG 479


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/684 (32%), Positives = 371/684 (54%), Gaps = 21/684 (3%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C      +Q   +HA+ +   G     ++ + LI  Y   G LSL+++VF+ +  
Sbjct: 148 SVLSACTKAALFEQGRLVHAQ-VYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY 206

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++   ++ G  E  L ++++M L    P   T   ++ +C+ + D   G+++
Sbjct: 207 CDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQL 266

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-------WNSLIS 206
           H+ ++K G      +  +L++ Y+KC        G+I    +  KS        WN ++ 
Sbjct: 267 HSYLLKAGMSPDYIIEGSLLDLYVKC--------GVIVEALEIFKSGDRTNVVLWNLMLV 318

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              Q     KSF+LF  M   G   +  T   LLR+      + LG  +H +++ + F  
Sbjct: 319 AYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFES 378

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+ V+  L+ MYSK   L+ A+ + + +  KD V W  MI+ Y Q  F KE+LE    M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQ 438

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
             G   D     +A+S+ + +K +  G+Q+H+ V  +G    VS+ N+L+++Y  C    
Sbjct: 439 LFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSK 498

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            A  +F++++ K  ++W+ M+ G+       EAL +F +M   GV+ +  T ++ + A  
Sbjct: 499 EAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASA 558

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           N+  ++  K +H   +K G  S + V  A+   Y KCG IE A   F E  +  ++ ++W
Sbjct: 559 NLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFE--MSERNHVSW 616

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N++I++ ++HG   +   L+ QMKQ  ++P+ +TF+G+L AC + GLVEEG   FK M  
Sbjct: 617 NTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSS 676

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G  P  +HYA +V++LGRAG +D AR+ V++MP   +A VW  LLSAC++H   E+ E
Sbjct: 677 EHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGE 736

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           L A+ L+ +EP ++ +YVLLSN YA  GKW     +R  ++DRG++K PG SWIE+  +V
Sbjct: 737 LAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVV 796

Query: 687 HEFWAADQSHPQADAIYTILGILE 710
           H F+  D+ HP A  IY  L  L+
Sbjct: 797 HAFFVGDRLHPLAHQIYKYLADLD 820



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/569 (28%), Positives = 297/569 (52%), Gaps = 6/569 (1%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           IHA+ I   GL ++ I  + LID YA  GL+  +++VF  +++ +++ +  +L   ++ G
Sbjct: 64  IHAKAITC-GLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
             E+ + +Y QM    + P       V+ +C+    F  G  +HAQV K G  S   VG+
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
           AL+  Y++       E+   +  + D +  +N+LIS   Q G  E + E+F+ MR+ G  
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCD-RVTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            D  T+ +LL +   +  L  G+ +H   + +    D  +  +LL +Y K   + +A  +
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F      + V+WN+M+ AY Q     +S +L   MV +G R + FT    + + +    I
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
             G+Q+H   ++ G +  + V   LIDMY +   L+ AR+I + ++ K VVSW+SMI GY
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
           V H+   EAL  F +M+L G+  D + + + + AC  I A+   + +H      G ++  
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADV 481

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
           S+  A+   YA+CG  + A  LF  E I+ KD ITWN M+S +A+ G + +  +++ +M 
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLF--EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMY 539

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           Q+ V+ ++ TF+  ++A  N   +++G+ I   + ++ G     E   ++++L G+ G +
Sbjct: 540 QAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSI 598

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMH 619
           ++A+    +M  +     W  ++++C  H
Sbjct: 599 EDAKMQFFEMSERNHVS-WNTIITSCSQH 626



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 232/490 (47%), Gaps = 22/490 (4%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK---FKDLKSR----WNSLI 205
           IHA+ +  G       G+ L++ Y K        KG++QR    F+ L +R    W +++
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAK--------KGLVQRARRVFEQLSARDNVSWVAML 115

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           S   +NG  E++  L+  M   G       L ++L +  +    E GR+VH        C
Sbjct: 116 SGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSC 175

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  V  AL+++Y +  SL  A+ +F +M   DRV +N +IS + Q G  + +LE+   M
Sbjct: 176 SETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM 235

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
             SG+  D  T  + +++ +++ ++  GKQ+H+ +L+ G      +  SL+D+Y +C  +
Sbjct: 236 RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVI 295

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A +IF S     VV W+ M+  Y       ++  LF +M   GV  +  T   +L  C
Sbjct: 296 VEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTC 355

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
              G +   + +H  S+K G  S   V+  +   Y+K G ++ A  +   E +++KD+++
Sbjct: 356 TYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL--EVLEAKDVVS 413

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W SMI+ Y +H    +  + +  M+   + PD I     ++AC     + +G+ I   + 
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVY 473

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            S GY      + ++VNL  R G   EA  L + +  K D   W  ++S     +++ L 
Sbjct: 474 VS-GYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMVSG---FAQSGLY 528

Query: 626 ELTAEKLISM 635
           E   E  I M
Sbjct: 529 EEALEVFIKM 538



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 9/411 (2%)

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +K   L  ++H  A+     +D      L+ +Y+K   ++ A+ +F+++S +D V W  M
Sbjct: 55  VKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAM 114

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           +S Y ++G  +E++ L   M  SG     +   + +S+ +     E G+ +HA V + GS
Sbjct: 115 LSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGS 174

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
             +  V N+LI +Y     L+ A ++F  +     V+++++I  +        AL +F E
Sbjct: 175 CSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEE 234

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+L G   D VTI ++L AC +IG L   K LH Y +K G++    +  ++   Y KCG 
Sbjct: 235 MRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGV 294

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           I  A E+F     D  +++ WN M+ AY +  D ++ F L+ QM  + VRP+  T+  LL
Sbjct: 295 IVEALEIFKSG--DRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLL 352

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
             C  AG +  G  I   +    G+E        ++++  + G +D+AR +++ +  K D
Sbjct: 353 RTCTYAGEINLGEQI-HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-D 410

Query: 606 ARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
              W  +++    H   +  L      +L  + P+N G   L S I A AG
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG---LASAISACAG 458


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/710 (31%), Positives = 390/710 (54%), Gaps = 17/710 (2%)

Query: 3   GLLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCE---NPQHLQQIHARYIILH 59
           GL   A SL S   +    P   T P        S++N C    + +  + IH R ++  
Sbjct: 153 GLFSEALSLYSETQRIRLQPDTYTFP--------SVINACAGLLDFEMAKSIHDR-VLXM 203

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +L + + LID Y     L  +++VF  +   + + + +++   +  G + + L +Y
Sbjct: 204 GFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY 263

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +     + P   T   V+R+C  L     G+ IH  + K+G      V + L+  Y K 
Sbjct: 264 YRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKF 323

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +G  +  +   +   +D  S WN++I    Q G  E+S +LF  M +   + D  T+ ++
Sbjct: 324 NGLIDGRRIFDKMVLRDAVS-WNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSI 381

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L++   L  LE G+ VH   + S +  D + +  L++MY+K  +L  ++ +F  M  KD 
Sbjct: 382 LQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS 441

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN MI+ Y Q+G   E+++L   M+++  + D  T +  +S  + + ++  GK++H +
Sbjct: 442 VSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD 500

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           + + G +  + V N+L+DMY +C ++  + K+F+++K + +++W+++I   V  +     
Sbjct: 501 LAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLG 560

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           LR+ S M+ EGV  D  T+++ILP C  + A    K +HG   KLGL S   V   +   
Sbjct: 561 LRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 620

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG +  + ++F   K  +KD++TW ++ISA   +G+  +  + + +M+ + + PD +
Sbjct: 621 YSKCGSLRNSFQVFKLMK--TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHV 678

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
            F+ ++ AC ++GLVEEG   F  MK+ Y  EP  EHYA +V+LL R+  +D+A + +  
Sbjct: 679 AFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILS 738

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPD+ +WG LLSAC+M  +TE+A+  +E++I + P++ G YVL+SN+YAA GKW+ V
Sbjct: 739 MPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQV 798

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
             +R  ++ RGLKK PGCSW+EI   V+ F    +   Q + +  +LG+L
Sbjct: 799 RSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGML 848



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 198/616 (32%), Positives = 324/616 (52%), Gaps = 20/616 (3%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSY 75
           +K LR     +R  + ++ S +L +     Q L ++H+  I L GLH ++I S+ LI  Y
Sbjct: 60  MKTLRVLHECSRQTLFSSISRALASAATTTQ-LHKLHSLIITL-GLHHSVIFSAKLIAKY 117

Query: 76  ANLGLLSLSQQVFNSITSPNSLLY--GTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           A+    + S  VF  + SP++ +Y   +I++ L+  G + + L +Y +     + P   T
Sbjct: 118 AHFRDPTSSFSVFR-LASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 176

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           +P VI +C+ LLDF   + IH +V+ +GF S   +G+AL++ Y + +   +  K   +  
Sbjct: 177 FPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 236

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S WNSLIS    NG   ++ E++   R  G   DS T+ ++LR+   L S+E G 
Sbjct: 237 LRDVVS-WNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGD 295

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           I+H +       KD+ VN  LLSMY K   L D + +FDKM  +D V WN MI  Y Q G
Sbjct: 296 IIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 355

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             +ES++L M MV   F+ DL T  + + +   + ++E+GK +H  ++ +G +   +  N
Sbjct: 356 LYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 414

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
            LI+MY +C +L  ++++F  +K K  VSW+SMI  Y+ +    EA++LF  MK + V+ 
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKP 473

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D VT + +L     +G L   K LH    K+G NS   V+  +   YAKCG  EM   L 
Sbjct: 474 DSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCG--EMGDSLK 531

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E + ++DIITWN++I++     D +   ++ ++M+   V PD+ T L +L  C     
Sbjct: 532 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAA 591

Query: 554 VEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
             +G+     IFK      G E        ++ +  + G +  + ++ K M  K D   W
Sbjct: 592 KRQGKEIHGCIFK-----LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTW 645

Query: 610 GPLLSACKMHSETELA 625
             L+SAC M+ E + A
Sbjct: 646 TALISACGMYGEGKKA 661


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/682 (34%), Positives = 378/682 (55%), Gaps = 14/682 (2%)

Query: 36  FSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S L  C + + L+Q   IH R I   G   N++LS +LI  Y +    + ++ VF +  
Sbjct: 7   LSALRTCTSSKLLKQGKLIHQR-IFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTND 65

Query: 93  SPNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISG 150
            P  + L+  +L   +    + + L ++ Q+   S + P   TYP V+++C  L   I G
Sbjct: 66  CPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYG 125

Query: 151 EKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            +IH  ++K G  +D F  VG +L+  Y KCD   +  K   +   +D+   WN++IS  
Sbjct: 126 RRIHNHLLKTGLIWDVF--VGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGC-WNAVISCY 182

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            ++GK+E + + F  M+  G E +S T   ++ S   L +LE G+ VH   +      D 
Sbjct: 183 FKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDA 242

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V +AL+ MY K   LE AK +F+K+  K+ + WN MI+ Y   G  +  +ELLM M   
Sbjct: 243 FVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDE 302

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G +  L T  + + + S    +  GK +H  +LRN  D  + +  SLID Y +C  ++ A
Sbjct: 303 GTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSA 362

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             IF ++    VVSW+ MI G+V     ++AL ++  MK   V+ D +T  + L AC  +
Sbjct: 363 ETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQL 422

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            AL+  + LH   +   L +   V  A+   YAKCG ++ A +LF   ++  +D+++W S
Sbjct: 423 AALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLF--HQLPKRDLVSWTS 480

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI AY  HG  S+  +L+ +M++ +VR D +TFL +L+AC +AGLV+EG + F EM   Y
Sbjct: 481 MIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQY 540

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELV-KDMPFKPDARVWGPLLSACKMHSETELAEL 627
             +P  EHY+ +++LLGRAG + EA E++ +    + D  +   L SAC +H+   L   
Sbjct: 541 DIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQ 600

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
             + LI ++P++   Y+LLSN+YA+  KW+ V K+R  +++ GLKK+PGCSWIEI + +H
Sbjct: 601 IGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIH 660

Query: 688 EFWAADQSHPQADAIYTILGIL 709
            F+A D+S+P AD +Y  L IL
Sbjct: 661 PFFAEDKSNPLADGVYECLNIL 682



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 172/333 (51%), Gaps = 8/333 (2%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D  TL++ LR+    K L+ G+++H       F  ++ ++ +L+  Y        A+++F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 292 DKMS-DKDRVVWNIMISAYYQSGFPKESLEL---LMCMVRSGFRADLFTAIAAVSSISTM 347
                  D  +WN ++SAY  +    E+L+L   L C   S  R D +T    + +   +
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNC--NSYVRPDFYTYPVVLKACGGL 119

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             + +G+++H ++L+ G  + V V +SL++MY +C+    A K+FD    + V  W+++I
Sbjct: 120 GRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVI 179

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
             Y    ++  AL+ F +MK  G E + VT   ++ +C  +  LE  K +H   ++  + 
Sbjct: 180 SCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRIL 239

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
             + V +A+   Y KCGC+EMA E+F  EKI  K+ ITWN+MI+ Y+  GD   C +L  
Sbjct: 240 LDAFVLSALVDMYGKCGCLEMAKEVF--EKIPRKNAITWNAMITGYSLKGDSRSCIELLM 297

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +M     +P L+T   ++ A   +  +  G+ I
Sbjct: 298 RMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFI 330



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 162/325 (49%), Gaps = 11/325 (3%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T ++A+ + ++ K ++ GK +H  +   G    + +  SLI  Y  C D   A  +F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 393 DSVKTKTVVS-WSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGA 450
            +      VS W++++  Y  + + +EAL+LF ++     V  DF T   +L AC  +G 
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGR 121

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           + + + +H + +K GL     V +++   YAKC     A +LFDE     +D+  WN++I
Sbjct: 122 VIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDE--FPQRDVGCWNAVI 179

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           S Y K G      K + +MK+    P+ +TF  ++++C     +E G+ + +E+ E    
Sbjct: 180 SCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRIL 239

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
             +    +++V++ G+ G ++ A+E+ + +P + +A  W  +++   +  ++       E
Sbjct: 240 LDAFV-LSALVDMYGKCGCLEMAKEVFEKIP-RKNAITWNAMITGYSLKGDSRSC---IE 294

Query: 631 KLISMEPENAGNYV--LLSNIYAAA 653
            L+ M  E     +  L S IYA++
Sbjct: 295 LLMRMNDEGTKPTLMTLTSIIYASS 319


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/645 (32%), Positives = 359/645 (55%), Gaps = 4/645 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G+  N  ++S+LI +Y   G + ++ ++F+ +   + +++  +L   +K G  +  +  +
Sbjct: 164 GMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGF 223

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M +  + P   T+  V+  C+  L    G ++H  VV  G D    + ++L+  Y KC
Sbjct: 224 SLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKC 283

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G F++   + +   +     WN +IS  VQ+G  E+S   F  M   G   D+ T  +L
Sbjct: 284 -GRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSL 342

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S  + ++LE  R +HC  +      D+ + +AL+  Y K   +  A+ +F + +  D 
Sbjct: 343 LPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDV 402

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           VV+  MIS Y  +G   ++LE+   +V+     +  T ++ +  I  +  ++ G+++H  
Sbjct: 403 VVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGF 462

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +++ G D + ++  ++IDMY +C  +N A +IF  +  + +VSW+SMI      D    A
Sbjct: 463 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAA 522

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + +F +M + G+  D V+I   L AC N+ +    K +HG+ +K  L       + +   
Sbjct: 523 IDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDM 582

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDL 538
           YAKCG ++ A  +FD  K   K+I++WNS+I+AY  HG       L+ +M ++S  RPD 
Sbjct: 583 YAKCGNLKAAMNVFDTMK--EKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQ 640

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL +++ C + G V+EG   F+ M + YG +P QEHYA +V+L GRAG + EA E VK
Sbjct: 641 ITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVK 700

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MPF PDA VWG LL A ++H   ELA++ + +L+ ++P N+G YVL+SN +A  G+W  
Sbjct: 701 SMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWES 760

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           V K+R+ +++R ++K PG SWIEI K+ H F + D +HP++  IY
Sbjct: 761 VTKVRSLMKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIY 805



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 162/590 (27%), Positives = 300/590 (50%), Gaps = 13/590 (2%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C N   L+Q   +HA ++I++ +  +      ++  YA  G  S   ++F  + S 
Sbjct: 37  LLQDCSNLTLLRQGKQVHA-FVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSR 95

Query: 95  NSLL--YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            S +  + +I+ +  + G   + L  Y +M    + P   T+P ++++C  L +F   E 
Sbjct: 96  LSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEF 155

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +   V  LG D  + V  +L++ Y++  G  +    +  R  +     WN +++   + G
Sbjct: 156 LSDTVSSLGMDCNEFVASSLIKAYLE-YGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCG 214

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
            S+   + F LMRM+    ++ T   +L        ++LG  +H + VVS    + S+  
Sbjct: 215 ASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN 274

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           +LLSMYSK    +DA  LF  MS  D V WN MIS Y QSG  +ESL     M+ SG   
Sbjct: 275 SLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP 334

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T  + + S+S  +N+E+ +Q+H  ++R+     + + ++LID Y +C  ++ A+KIF
Sbjct: 335 DAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIF 394

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
               +  VV +++MI GY+ +  +++AL +F  +    +  + +T+++ILP    + AL+
Sbjct: 395 SQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALK 454

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + LHG+ +K G ++  ++  A+   YAKCG + +A E+F   ++  +DI++WNSMI+ 
Sbjct: 455 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFG--RLSKRDIVSWNSMITR 512

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYGYE 571
            A+  + S    ++ QM  S +  D ++    L+AC N      G+ I   M K S   +
Sbjct: 513 CAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALD 572

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
              E  ++++++  + G++  A  +   M  K +   W  +++A   H +
Sbjct: 573 VYSE--STLIDMYAKCGNLKAAMNVFDTMKEK-NIVSWNSIIAAYGNHGK 619



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/527 (23%), Positives = 247/527 (46%), Gaps = 49/527 (9%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   +++ GL     + ++L+  Y+  G    + ++F  ++  +++ +  ++    + 
Sbjct: 256 QLHG-LVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQS 314

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDD 167
           G  E++L+ + +M    + P   T+  ++ S S   +     +IH  +++  +  D F  
Sbjct: 315 GLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIF-- 372

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKL 223
           +  AL++ Y KC G       M Q+ F    S     + ++IS  + NG +  + E+F+ 
Sbjct: 373 LTSALIDAYFKCRG-----VSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRW 427

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           +       +  TL+++L     L +L+LGR +H   +   F    ++  A++ MY+K   
Sbjct: 428 LVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 487

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +  A  +F ++S +D V WN MI+   QS  P  ++++   M  SG   D  +  AA+S+
Sbjct: 488 MNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSA 547

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + + +  +GK +H  ++++     V   ++LIDMY +C +L  A  +FD++K K +VSW
Sbjct: 548 CANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSW 607

Query: 404 SSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYS 461
           +S+I  Y  H +  ++L LF EM +  G   D +T + I+  C ++G + E V++    +
Sbjct: 608 NSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMT 667

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMA----------------GELFDEEKIDSK---- 501
              G+         +   + + G +  A                G L    ++       
Sbjct: 668 QDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELA 727

Query: 502 --------DIITWNS----MIS-AYAKHGDWSQCFKLYTQMKQSDVR 535
                   D+  WNS    +IS A+A  G+W    K+ + MK+ +V+
Sbjct: 728 KVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQ 774



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 170/339 (50%), Gaps = 4/339 (1%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
           EN ++ +QIH  YI+ H +  ++ L+S LID+Y     +S++Q++F+   S + +++  +
Sbjct: 350 ENLEYCRQIHC-YIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAM 408

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +      G     L +++ +    + P E T   ++     LL    G ++H  ++K GF
Sbjct: 409 ISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGF 468

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           D+  ++G A+++ Y KC G       +  R  K     WNS+I+   Q+     + ++F+
Sbjct: 469 DNRCNIGCAVIDMYAKC-GRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFR 527

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M + G  FD  ++   L +   L S   G+ +H   +      D+   + L+ MY+K  
Sbjct: 528 QMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCG 587

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAV 341
           +L+ A  +FD M +K+ V WN +I+AY   G  K+SL L   MV +SG R D  T +  +
Sbjct: 588 NLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEII 647

Query: 342 SSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMY 379
           S    + +++ G +   ++ ++ G   Q   +  ++D++
Sbjct: 648 SLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLF 686



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 16/220 (7%)

Query: 401 VSWSSMIKGYVTHDQSL---EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +S SS+ K +V + +SL    + R   E     + +       +L  C N+  L   K +
Sbjct: 1   MSISSVAKRFVPYKKSLPLRNSYRFLEETLPRRLSL-------LLQDCSNLTLLRQGKQV 53

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK--DIITWNSMISAYAK 515
           H + +   ++  S  +  I   YA CG     G++F   ++DS+   I  WNS+IS++ +
Sbjct: 54  HAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMF--YRLDSRLSSIRPWNSIISSFVR 111

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
            G  +Q    Y +M    V PD+ TF  L+ ACV A    +G     +   S G + ++ 
Sbjct: 112 MGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV-ALKNFKGIEFLSDTVSSLGMDCNEF 170

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
             +S++      G +D A +L  D   + D  +W  +L+ 
Sbjct: 171 VASSLIKAYLEYGKIDVAGKLF-DRVLQKDCVIWNVMLNG 209


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/676 (30%), Positives = 364/676 (53%), Gaps = 7/676 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   +   Q   IHA+    HG    + + + +I  Y   G   L+++VF  +  
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGY-KHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +++ + T++   ++ G  E  L ++++M    + P   T   ++ +C+ L D   G ++
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H+ + K G  S   +  +L++ Y+KC G  E    +     +     WN ++    Q   
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKC-GDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             KSFELF  M+  G   +  T   +LR+    + ++LG  +H ++V + F  D+ V+  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK   LE A+ + + + +KD V W  MI+ Y Q    K++L     M + G   D
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
                +A+S  + +  +  G Q+HA +  +G    VS+ N+L+++Y  C  +  A   F+
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            ++ K  ++W+ ++ G+       EAL++F  M   GV+ +  T ++ L A  N+  ++ 
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H   +K G +  + V  A+   Y KCG  E A   F E  +  ++ ++WN++I++ 
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE--MSERNEVSWNTIITSC 623

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           ++HG   +   L+ QMK+  ++P+ +TF+G+L AC + GLVEEG   FK M + YG  P 
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPR 683

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYA ++++ GRAG +D A++ +++MP   DA VW  LLSACK+H   E+ E  A+ L+
Sbjct: 684 PDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLL 743

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP ++ +YVLLSN YA   KW    ++R  +RDRG++K PG SWIE+  +VH F+  D
Sbjct: 744 ELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGD 803

Query: 694 QSHPQADAIYTILGIL 709
           + HP A+ IY  L ++
Sbjct: 804 RLHPLAEQIYNFLAVI 819



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 169/578 (29%), Positives = 302/578 (52%), Gaps = 14/578 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q + +IHA+  +  GL +  I+ + LID Y+  GL+  +++VF  +++ +++ +  +L  
Sbjct: 59  QVVPEIHAK-AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++ G  E+ L +Y+QM    + P       V+ SC+    F  G  IHAQ  K GF S 
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             VG+A++  Y++C G F     + +R F D+  R    +N+LIS   Q G  E + E+F
Sbjct: 178 IFVGNAVITLYLRC-GSFR----LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIF 232

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M+  G   D  T+ +LL +   L  L+ G  +H     +    D  +  +LL +Y K 
Sbjct: 233 EEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKC 292

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +E A ++F+     + V+WN+M+ A+ Q     +S EL   M  +G R + FT    +
Sbjct: 293 GDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCIL 352

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + +  + I+ G+Q+H+  ++ G +  + V   LIDMY +   L  AR++ + +K K VV
Sbjct: 353 RTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV 412

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+SMI GYV H+   +AL  F EM+  G+  D + + + +  C  I A+     +H   
Sbjct: 413 SWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI 472

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
              G +   S+  A+   YA+CG I  A   F+E  I+ KD ITWN ++S +A+ G   +
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE--IEHKDEITWNGLVSGFAQSGLHEE 530

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             K++ +M QS V+ ++ TF+  L+A  N   +++G+ I   + ++ G+    E   +++
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALI 589

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +L G+ G  ++A+    +M  + +   W  ++++C  H
Sbjct: 590 SLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQH 626


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/786 (29%), Positives = 398/786 (50%), Gaps = 114/786 (14%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C    +L+   Q+HA+ ++++G+     L S L++ Y   G +  ++++F+ ++ 
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQ-LVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N   +  I++     G+YE+T+ ++  M  + + P    +P V ++CS L ++  G+ +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCD------------------------GGFENEKGM 189
           +  ++ +GF+    V  ++++ +IKC                          G+   KG 
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY-TSKGE 271

Query: 190 IQRKFK---DLK--------SRWNSLISLAVQNGKSEKS--------------------- 217
            ++  K   D+K          WN++IS   Q+G+ E++                     
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWT 331

Query: 218 ------------FE---LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV-V 261
                       FE   +F+ M +EG + +S T+ + + +   L  L  GR +H   + V
Sbjct: 332 ALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
            +   DL V  +L+  Y+K  S+E A+  F  +   D V WN M++ Y   G  +E++EL
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 322 LMCMVRSGFRADLF-----------------------------------TAIAAVSSIST 346
           L  M   G   D+                                    T   A+++   
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQ 511

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           ++N++ GK++H  VLRN  +    V ++LI MY  C+ L  A  +F  + T+ VV W+S+
Sbjct: 512 VRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSI 571

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I       +S+ AL L  EM L  VEV+ VT+++ LPAC  + AL   K +H + ++ GL
Sbjct: 572 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGL 631

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           ++ + +  ++   Y +CG I+ +  +FD   +  +D+++WN MIS Y  HG       L+
Sbjct: 632 DTCNFILNSLIDMYGRCGSIQKSRRIFD--LMPQRDLVSWNVMISVYGMHGFGMDAVNLF 689

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
              +   ++P+ ITF  LL+AC ++GL+EEG   FK MK  Y  +P+ E YA MV+LL R
Sbjct: 690 QXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 749

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG  +E  E ++ MPF+P+A VWG LL AC++H   +LAE  A  L  +EP+++GNYVL+
Sbjct: 750 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 809

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +NIY+AAG+W   AK+R  +++RG+ K PGCSWIE+ + +H F   D SHP  + I    
Sbjct: 810 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISGKD 869

Query: 707 GILELE 712
           G L+++
Sbjct: 870 GKLDVD 875



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 241/526 (45%), Gaps = 54/526 (10%)

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           NL  L+ ++Q     +   S+    +L N +         ++   M L +     + Y  
Sbjct: 44  NLRKLTNARQRITGFSGGGSVHRNGVLNNAA---------MLLSSMDLTNPDECIEIYAS 94

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           +++ C  L +   G ++HAQ+V  G D  + +G  L+E Y +  G  E+ + M  +  + 
Sbjct: 95  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ-TGCVEDARRMFDKMSER 153

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               W +++ +    G  E++ +LF LM  EG   D      + ++  ELK+  +G+ V+
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              +   F  +  V  ++L M+ K   ++ A+  F+++  KD  +WNIM+S Y   G  K
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           ++L+ +  M  SG + D  T               W                    N++I
Sbjct: 274 KALKCISDMKLSGVKPDQVT---------------W--------------------NAII 298

Query: 377 DMYCECEDLNCARKIFDSVK-----TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             Y +      A K F  +         VVSW+++I G   +    EAL +F +M LEGV
Sbjct: 299 SGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAG 490
           + + +TI + + AC N+  L H + +HGY +K+  L+S   V  ++   YAKC  +E+A 
Sbjct: 359 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVAR 418

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
             F    I   D+++WN+M++ YA  G   +  +L ++MK   + PD+IT+ GL+T    
Sbjct: 419 RKFG--MIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQ 476

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
            G  +     F+ M  S G +P+    +  +   G+  ++   +E+
Sbjct: 477 YGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEI 521


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/678 (34%), Positives = 367/678 (54%), Gaps = 10/678 (1%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C N + L+Q   IH + + L GL  ++ L   LI+ Y +  L   ++ VF+++ +P
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTL-GLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENP 67

Query: 95  NSL-LYGTILKNLSKFGEYEKTL-LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + L+  ++   +K   Y + L L  K +    + P   TYP V ++C  L  ++ G+ 
Sbjct: 68  CEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKM 127

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH  ++K G      VG +LV  Y KC+  FE    +     +   + WN++IS   Q+G
Sbjct: 128 IHTCLIKTGLMMDIVVGSSLVGMYGKCNA-FEKAIWLFNEMPEKDVACWNTVISCYYQSG 186

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             + + E F LMR  G E +S T+   + S   L  L  G  +H   + S F  D  +++
Sbjct: 187 NFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISS 246

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+ MY K   LE A  +F++M  K  V WN MIS Y   G     ++L   M   G + 
Sbjct: 247 ALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKP 306

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
            L T  + +   S    +  GK +H   +RN     V V++SL+D+Y +C  +  A KIF
Sbjct: 307 TLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIF 366

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +    VVSW+ MI GYV   +  EAL LFSEM+   VE D +T  ++L AC  + ALE
Sbjct: 367 KLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALE 426

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +H   ++  L++   V  A+   YAKCG ++ A  +F  + +  +D+++W SMI+A
Sbjct: 427 KGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVF--KCLPKRDLVSWTSMITA 484

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y  HG      +L+ +M QS+V+PD + FL +L+AC +AGLV+EG   F +M   YG  P
Sbjct: 485 YGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIP 544

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAELTAEK 631
             EHY+ +++LLGRAG + EA E+++  P  + D  +   L SAC++H   +L    A  
Sbjct: 545 RVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIART 604

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           LI  +P+++  Y+LLSN+YA+A KW+ V  +R+ +++ GLKK PGCSWIEI + +  F+ 
Sbjct: 605 LIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFV 664

Query: 692 ADQSHPQADAIYTILGIL 709
            D SH   + ++  L  L
Sbjct: 665 EDNSHLHLELVFKCLSYL 682



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 189/392 (48%), Gaps = 18/392 (4%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+  L+ LLR+ +  KSL+ G+++H   V      D+ +   L++ Y      + AK +F
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 292 DKMSDKDRV-VWNIMISAYYQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMKN 349
           D M +   + +WN +++ Y ++    E+LEL   ++   + + D +T  +   +   +  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
              GK +H  +++ G    + V +SL+ MY +C     A  +F+ +  K V  W+++I  
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y       +AL  F  M+  G E + VTI   + +C  +  L     +H   +  G    
Sbjct: 182 YYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           S +++A+   Y KCG +EMA E+F  E++  K ++ WNSMIS Y   GD   C +L+ +M
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEIF--EQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM 299

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY------EPSQEHYASMVNL 583
               V+P L T   L+  C  +  + EG+ +       +GY      +P     +S+++L
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFV-------HGYTIRNRIQPDVFVNSSLMDL 352

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
             + G ++ A ++ K +P K     W  ++S 
Sbjct: 353 YFKCGKVELAEKIFKLIP-KSKVVSWNVMISG 383



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 4/184 (2%)

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           +D   ++ +L AC+N  +L+  K +H   + LGL +   +   +   Y  C   + A  +
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNA 551
           FD  + +  +I  WN +++ Y K+  + +  +L+ ++     ++PD  T+  +  AC   
Sbjct: 61  FDNME-NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGL 119

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
                G++I   + ++ G        +S+V + G+    ++A  L  +MP K D   W  
Sbjct: 120 HRYVLGKMIHTCLIKT-GLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEK-DVACWNT 177

Query: 612 LLSA 615
           ++S 
Sbjct: 178 VISC 181


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/676 (30%), Positives = 364/676 (53%), Gaps = 7/676 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   +   Q   IHA+    HG    + + + +I  Y   G   L+++VF  +  
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGY-KHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +++ + T++   ++ G  E  L ++++M    + P   T   ++ +C+ L D   G ++
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H+ + K G  S   +  +L++ Y+KC G  E    +     +     WN ++    Q   
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKC-GDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             KSFELF  M+  G   +  T   +LR+    + ++LG  +H ++V + F  D+ V+  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK   LE A+ + + + +KD V W  MI+ Y Q    K++L     M + G   D
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
                +A+S  + +  +  G Q+HA +  +G    VS+ N+L+++Y  C  +  A   F+
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            ++ K  ++W+ ++ G+       EAL++F  M   GV+ +  T ++ L A  N+  ++ 
Sbjct: 506 EIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H   +K G +  + V  A+   Y KCG  E A   F E  +  ++ ++WN++I++ 
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE--MSERNEVSWNTIITSC 623

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           ++HG   +   L+ QMK+  ++P+ +TF+G+L AC + GLVEEG   FK M + YG  P 
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPR 683

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYA ++++ GRAG +D A++ +++MP   DA VW  LLSACK+H   E+ E  A+ L+
Sbjct: 684 PDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLL 743

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP ++ +YVLLSN YA   KW    ++R  +RDRG++K PG SWIE+  +VH F+  D
Sbjct: 744 ELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGD 803

Query: 694 QSHPQADAIYTILGIL 709
           + HP A+ IY  L ++
Sbjct: 804 RLHPLAEQIYNFLAVI 819



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 169/578 (29%), Positives = 302/578 (52%), Gaps = 14/578 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q + +IHA+  +  GL +  I+ + LID Y+  GL+  +++VF  +++ +++ +  +L  
Sbjct: 59  QVVPEIHAK-AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++ G  E+ L +Y+QM    + P       V+ SC+    F  G  IHAQ  K GF S 
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             VG+A++  Y++C G F     + +R F D+  R    +N+LIS   Q G  E + E+F
Sbjct: 178 IFVGNAVITLYLRC-GSFR----LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIF 232

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M+  G   D  T+ +LL +   L  L+ G  +H     +    D  +  +LL +Y K 
Sbjct: 233 EEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKC 292

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +E A ++F+     + V+WN+M+ A+ Q     +S EL   M  +G R + FT    +
Sbjct: 293 GDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCIL 352

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + +  + I+ G+Q+H+  ++ G +  + V   LIDMY +   L  AR++ + +K K VV
Sbjct: 353 RTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV 412

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+SMI GYV H+   +AL  F EM+  G+  D + + + +  C  I A+     +H   
Sbjct: 413 SWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI 472

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
              G +   S+  A+   YA+CG I  A   F+E  I+ KD ITWN ++S +A+ G   +
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE--IEHKDEITWNGLVSGFAQSGLHEE 530

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             K++ +M QS V+ ++ TF+  L+A  N   +++G+ I   + ++ G+    E   +++
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALI 589

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +L G+ G  ++A+    +M  + +   W  ++++C  H
Sbjct: 590 SLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQH 626


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/675 (32%), Positives = 372/675 (55%), Gaps = 12/675 (1%)

Query: 37  SLLNLCENPQHLQQIHARYI---ILHGLHQ--NLILSSNLIDSYANLGLLSLSQQVFNSI 91
           +L+ LCEN +   +    Y+   +L  L    ++ L + L+  +   G +  +  VF  +
Sbjct: 38  ALIRLCENKRGYSE--GEYVWKAVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRM 95

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              +   +  ++   +K G +++ L +Y ++    + P   T+P V+RSC+  +D + G 
Sbjct: 96  GERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGR 155

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++HA VV+  FD   DV +AL+  Y+KC G   + + +  +     +  WN++IS   +N
Sbjct: 156 EVHAHVVRFDFDMDVDVVNALITMYVKC-GDVVSARMLFDKMPTRDRISWNAMISGYFEN 214

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            +  +  ELF  MR    + D  T+ +++ +   L    LG  +H   V + +  ++SV 
Sbjct: 215 DECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVY 274

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            +L+ MY  +   ++A+ +F  M  +D V W  +IS    +  P ++LE    M  +G  
Sbjct: 275 NSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTM 334

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T  + +S+ +++  ++ G ++H    R G    V V NSLIDMY +C+ +  A +I
Sbjct: 335 PDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEI 394

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K V+SW+S+I G   +++  EAL  F +M L+  + + VT+I+ L AC  +GAL
Sbjct: 395 FHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGAL 453

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              K +H +++K G+     +  AI   Y +CG +  A   F+   ++ KD+  WN +++
Sbjct: 454 MCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN---LNEKDVGAWNILLT 510

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+ G  +   +L+ +M +S++ PD +TF+ LL AC  +G+V EG   F+ MK +Y   
Sbjct: 511 GYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHIT 570

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P+ +HYA +V+LLGRAG ++EA E ++ MP KPD  +WG LL+AC++H    L EL A+ 
Sbjct: 571 PNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQH 630

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           +   + E+ G Y+LL N+YA +GKW+ VAK+R  +++ GL   PGCSW+E+   VH F +
Sbjct: 631 IFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLS 690

Query: 692 ADQSHPQADAIYTIL 706
            D  HPQ   I  +L
Sbjct: 691 GDNFHPQMQEINVVL 705


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/711 (32%), Positives = 395/711 (55%), Gaps = 52/711 (7%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL---LSLSQQVFN----SI 91
           L  C+    L+Q+H + I  +GL Q     + L+++ A +     L  +++ F      +
Sbjct: 32  LRCCKTLNQLKQLHCQ-ITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDV 90

Query: 92  TSPNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
            S ++L +  ++++  S  G   + +L+Y +M +  + P   T+PFV+  C+ +  F  G
Sbjct: 91  RSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISL 207
            ++H  VVK+G +    + + L+ FY +C   D G +  +GM +R        W SLI  
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVS----WTSLICG 206

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCK 266
             +  + +++  LF  M   G    S T++ ++ +  +L+ L++G R+   +  +     
Sbjct: 207 YARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLN 266

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
            + VN AL+ MY K  +++ AK LFD+  D++ V++N ++S Y + G  +E+L +L  M+
Sbjct: 267 KVMVN-ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEML 325

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           + G R D  T ++A+S+ + + ++ +GK  H  V+RNG +   S+ N +IDMY +C    
Sbjct: 326 QQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPE 385

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTH-----------------------------DQSL 417
            A ++FD +  KTVVSW+S+  G++ +                              +SL
Sbjct: 386 MACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSL 445

Query: 418 --EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +A+ LF EM+ EG++ D VT++ I  AC  +GA E  K++H Y  K G+     +NTA
Sbjct: 446 FEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTA 505

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   +A+CG  + A ++F+  K+  +D+  W + I   A  G+      L+ QM    V+
Sbjct: 506 LVDMFARCGDPQSAMQVFN--KMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVK 563

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD++ F+ +LTAC + G VE+G  IF  M E +G  P  EHY  MV+LLGRAG + EA +
Sbjct: 564 PDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFD 622

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           L+K MP +P+  VWG LL+AC++H   E+A   AE++  + P+ AG +VLLSNIYA+AGK
Sbjct: 623 LIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGK 682

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           W  VA++R  LR++G++K PG S +++  ++HEF + D+SHP+   I  +L
Sbjct: 683 WTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALML 733



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 126/262 (48%), Gaps = 11/262 (4%)

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC---EDLNCARKIFDSVK--- 396
           S+   K +   KQ+H  + +NG D   S    L++   E    E L+ ARK F+  K   
Sbjct: 31  SLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDV 90

Query: 397 --TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
                +   +S+I+GY +     EA+ L+  M + GV  +  T   +L  C  I A    
Sbjct: 91  RSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEG 150

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
             +HG  +K+GL     +   +   YA+CG ++   ++F  E +  +++++W S+I  YA
Sbjct: 151 IQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF--EGMSERNVVSWTSLICGYA 208

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           +     +   L+ +M ++ +RP  +T + +++AC     ++ G  +   + E  G + ++
Sbjct: 209 RGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGE-LGLKLNK 267

Query: 575 EHYASMVNLLGRAGHMDEAREL 596
               ++V++  + G +D A+ L
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRL 289


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/678 (31%), Positives = 375/678 (55%), Gaps = 8/678 (1%)

Query: 30  MTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           M   ++FS +L+ C+  + L+   Q+H   + L G   +  + + L+  Y +LG L  ++
Sbjct: 245 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAE 303

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            +F++++  +++ Y T++  LS+ G  EK + ++K+M L  + P  +T   ++ +CS   
Sbjct: 304 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 363

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
               G+++HA   KLGF S + +  AL+  Y KC          ++ + +++   WN ++
Sbjct: 364 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV-VLWNVML 422

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
                      SF +F+ M++E    +  T  ++L++ + L  LELG  +H   + ++F 
Sbjct: 423 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 482

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  V + L+ MY+KL  L+ A  +  + + KD V W  MI+ Y Q  F  ++L     M
Sbjct: 483 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 542

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           +  G R+D      AVS+ + ++ ++ G+Q+HA    +G    +   N+L+ +Y  C  +
Sbjct: 543 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 602

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             +   F+  +    ++W++++ G+     + EALR+F  M  EG++ +  T  + + A 
Sbjct: 603 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 662

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
                ++  K +H    K G +S + V  A+   YAKCG I  A + F E  + +K+ ++
Sbjct: 663 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE--VSTKNEVS 720

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN++I+AY+KHG  S+    + QM  S+VRP+ +T +G+L+AC + GLV++G   F+ M 
Sbjct: 721 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 780

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             YG  P  EHY  +V++L RAG +  A+E +++MP KPDA VW  LLSAC +H   E+ 
Sbjct: 781 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 840

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           E  A  L+ +EPE++  YVLLSN+YA + KW+     R  ++++G+KK PG SWIE+   
Sbjct: 841 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 900

Query: 686 VHEFWAADQSHPQADAIY 703
           +H F+  DQ+HP AD I+
Sbjct: 901 IHSFYVGDQNHPLADEIH 918



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 151/616 (24%), Positives = 288/616 (46%), Gaps = 20/616 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H++ + L GL  N  LS  L D Y   G L  + +VF+ +       +  ++K L+ 
Sbjct: 65  RKLHSQILKL-GLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 123

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSF 165
                +   ++ +M  +++ P E T+  V+ +C   S   D +  E+IHA+++  G    
Sbjct: 124 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDS 181

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK----SRWNSLISLAVQNGKSEKSFELF 221
             V + L++ Y +   GF +   + +R F  L+    S W ++IS   +N    ++  LF
Sbjct: 182 TVVCNPLIDLYSR--NGFVD---LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF 236

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M + G         ++L +  +++SLE+G  +H + +   F  D  V  AL+S+Y  L
Sbjct: 237 CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL 296

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            +L  A+ +F  MS +D V +N +I+   Q G+ ++++EL   M   G   D  T  + V
Sbjct: 297 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 356

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + S    +  G+Q+HA   + G      +  +L+++Y +C D+  A   F   + + VV
Sbjct: 357 VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVV 416

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
            W+ M+  Y   D    + R+F +M++E +  +  T  +IL  C+ +G LE  + +H   
Sbjct: 417 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 476

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K      + V + +   YAK G ++ A ++    +   KD+++W +MI+ Y ++    +
Sbjct: 477 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI--RFAGKDVVSWTTMIAGYTQYNFDDK 534

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
               + QM    +R D +     ++AC     ++EG+ I  +   S G+        ++V
Sbjct: 535 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALV 593

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
            L  R G ++E+  L  +     D   W  L+S  +     E A L     ++ E  +  
Sbjct: 594 TLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA-LRVFVRMNREGIDNN 651

Query: 642 NYVLLSNIYAAAGKWN 657
           N+   S + AA+   N
Sbjct: 652 NFTFGSAVKAASETAN 667



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 250/520 (48%), Gaps = 25/520 (4%)

Query: 125 QSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI-KCD 180
           + + P   T  +++  C   +  LD   G K+H+Q++KLG DS   + + L +FY+ K D
Sbjct: 38  RGIRPNHQTLKWLLEGCLKTNGSLD--EGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGD 95

Query: 181 --GGFENEKGMIQRKFKDLKSRWNSLI-SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
             G F+    M +R        WN +I  LA +N   E  F LF  M  E    + GT  
Sbjct: 96  LYGAFKVFDEMPERTI----FTWNKMIKELASRNLIGE-VFGLFVRMVSENVTPNEGTFS 150

Query: 238 NLLRS----TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            +L +    +V    +E    +H   +         V   L+ +YS+   ++ A+ +FD 
Sbjct: 151 GVLEACRGGSVAFDVVEQ---IHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDG 207

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           +  KD   W  MIS   ++    E++ L   M   G     +   + +S+   ++++E G
Sbjct: 208 LRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG 267

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           +Q+H  VL+ G      V N+L+ +Y    +L  A  IF ++  +  V+++++I G    
Sbjct: 268 EQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQC 327

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               +A+ LF  M L+G+E D  T+ +++ AC   G L   + LH Y+ KLG  S + + 
Sbjct: 328 GYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE 387

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            A+   YAKC  IE A + F E +++  +++ WN M+ AY    D    F+++ QM+  +
Sbjct: 388 GALLNLYAKCADIETALDYFLETEVE--NVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 445

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + P+  T+  +L  C+  G +E G  I  ++ ++  ++ +    + ++++  + G +D A
Sbjct: 446 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT-NFQLNAYVCSVLIDMYAKLGKLDTA 504

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +++     K D   W  +++    ++  + A  T  +++
Sbjct: 505 WDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQML 543


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/628 (34%), Positives = 347/628 (55%), Gaps = 77/628 (12%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  VF +I  PN L++  + +  +   +    L +Y  M    + P   T+PF+++S
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+    F  G++IH  V+KLGFD         ++ Y+                       
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFD---------LDLYVH---------------------- 113

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
             SLIS+  QNG+ E + ++F                               R  H    
Sbjct: 114 -TSLISMYAQNGRLEDAQKVFD------------------------------RSSH---- 138

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                +D+   TAL++ Y+    +E A+ +FD++  KD V WN MIS Y ++G  K++LE
Sbjct: 139 -----RDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALE 193

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M+++  + D  T    VS+ +   +IE G+Q+H+ +  +G    + + N+LID+Y 
Sbjct: 194 LFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYS 253

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C ++  A ++ + +  K V+SW+++I GY   +   EAL LF EM   G   + VT+++
Sbjct: 254 KCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 313

Query: 441 ILPACVNIGALEHVKYLHGYSMK----LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           ILPAC ++GA++  +++H Y  K    + + + SS+ T++   YAKCG I+ A ++ D  
Sbjct: 314 ILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSS 373

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
             + + + TWN+MI  +A HG  +  F ++++M+++ + PD ITF+GLL+AC ++G+++ 
Sbjct: 374 AFN-RSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 432

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           GR IF+ M++ Y   P  EHY  M++LLG +G   EA E++  MP +PD  +W  LL AC
Sbjct: 433 GRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKAC 492

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL-KKTP 675
           K+H   EL E  A+KLI +EPEN G+YVLLSNIYA AGKWN V K+RT L D+G+ KK P
Sbjct: 493 KIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVP 552

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIY 703
           GCS IEI  +VHEF   D+ HPQ   IY
Sbjct: 553 GCSSIEIDSVVHEFIIGDKLHPQNREIY 580



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 150/313 (47%), Gaps = 45/313 (14%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           + L  A  +F+++     + W+ M +G+      + AL+L+  M   G+  +F T   +L
Sbjct: 23  DGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLL 82

Query: 443 PACVNIGALEHVKYLHGYSMKLGLN----------SLSSVN------------------- 473
            +C      +  + +HG+ +KLG +          S+ + N                   
Sbjct: 83  KSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVV 142

Query: 474 --TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
             TA+   YA  G IE A ++FDE  I  KD+++WN+MIS YA+ G++ +  +L+ +M +
Sbjct: 143 SYTALITGYASRGYIESAQKMFDE--IPIKDVVSWNAMISGYAETGNYKKALELFKEMMK 200

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           ++V+PD  T   +++AC  +G +E GR +   + + +G+  + +   ++++L  + G ++
Sbjct: 201 TNVKPDESTMATVVSACAQSGSIELGRQVHSWIND-HGFGSNLKIVNALIDLYSKCGEVE 259

Query: 592 EARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            A EL++ +  K D   W  L+     M+   E   L  E L S E  N  +  +LS + 
Sbjct: 260 TACELLEGLSNK-DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN--DVTMLSILP 316

Query: 651 AAA-------GKW 656
           A A       G+W
Sbjct: 317 ACAHLGAIDIGRW 329



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 177/367 (48%), Gaps = 24/367 (6%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           H++++  + LI  YA+ G +  +Q++F+ I   + + +  ++   ++ G Y+K L ++K+
Sbjct: 138 HRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKE 197

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M   ++ P E T   V+ +C+       G ++H+ +   GF S   + +AL++ Y KC G
Sbjct: 198 MMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKC-G 256

Query: 182 GFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
             E    +++    KD+ S WN+LI         +++  LF+ M   G   +  T++++L
Sbjct: 257 EVETACELLEGLSNKDVIS-WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 315

Query: 241 RSTVELKSLELGRIVHCV-------AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            +   L ++++GR +H          VV++     S+ T+L+ MY+K   ++ A  + D 
Sbjct: 316 PACAHLGAIDIGRWIHVYIDKKLKGVVVTNAS---SLRTSLIDMYAKCGDIDAAPQVSDS 372

Query: 294 MS-DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
            + ++    WN MI  +   G    + ++   M ++G   D  T +  +S+ S    ++ 
Sbjct: 373 SAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 432

Query: 353 GKQMHANVLRN-GSDYQVSV----HNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSM 406
           G+    N+ R+   DY ++     +  +ID+         A ++ +++  +   V W S+
Sbjct: 433 GR----NIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSL 488

Query: 407 IKGYVTH 413
           +K    H
Sbjct: 489 LKACKIH 495



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 121/266 (45%), Gaps = 7/266 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H+ +I  HG   NL + + LID Y+  G +  + ++   +++ + + + T++   + 
Sbjct: 227 RQVHS-WINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTH 285

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK----LGFDS 164
              Y++ LL++++M      P + T   ++ +C+ L     G  IH  + K    +   +
Sbjct: 286 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTN 345

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
              +  +L++ Y KC       +      F    S WN++I     +G++  +F++F  M
Sbjct: 346 ASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRM 405

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           R  G E D  T + LL +      L+LGR I   +    +    L     ++ +      
Sbjct: 406 RKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGL 465

Query: 284 LEDAKMLFDKMS-DKDRVVWNIMISA 308
            ++A+ + + M  + D V+W  ++ A
Sbjct: 466 FKEAEEMINTMPMEPDGVIWCSLLKA 491


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/678 (31%), Positives = 375/678 (55%), Gaps = 8/678 (1%)

Query: 30  MTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           M   ++FS +L+ C+  + L+   Q+H   + L G   +  + + L+  Y +LG L  ++
Sbjct: 285 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAE 343

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            +F++++  +++ Y T++  LS+ G  EK + ++K+M L  + P  +T   ++ +CS   
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
               G+++HA   KLGF S + +  AL+  Y KC          ++ + +++   WN ++
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV-VLWNVML 462

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
                      SF +F+ M++E    +  T  ++L++ + L  LELG  +H   + ++F 
Sbjct: 463 VAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ 522

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  V + L+ MY+KL  L+ A  +  + + KD V W  MI+ Y Q  F  ++L     M
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 582

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           +  G R+D      AVS+ + ++ ++ G+Q+HA    +G    +   N+L+ +Y  C  +
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             +   F+  +    ++W++++ G+     + EALR+F  M  EG++ +  T  + + A 
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
                ++  K +H    K G +S + V  A+   YAKCG I  A + F E  + +K+ ++
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE--VSTKNEVS 760

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN++I+AY+KHG  S+    + QM  S+VRP+ +T +G+L+AC + GLV++G   F+ M 
Sbjct: 761 WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMN 820

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             YG  P  EHY  +V++L RAG +  A+E +++MP KPDA VW  LLSAC +H   E+ 
Sbjct: 821 SEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIG 880

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           E  A  L+ +EPE++  YVLLSN+YA + KW+     R  ++++G+KK PG SWIE+   
Sbjct: 881 EFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNS 940

Query: 686 VHEFWAADQSHPQADAIY 703
           +H F+  DQ+HP AD I+
Sbjct: 941 IHSFYVGDQNHPLADEIH 958



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 151/616 (24%), Positives = 288/616 (46%), Gaps = 20/616 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H++ + L GL  N  LS  L D Y   G L  + +VF+ +       +  ++K L+ 
Sbjct: 105 RKLHSQILKL-GLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSF 165
                +   ++ +M  +++ P E T+  V+ +C   S   D +  E+IHA+++  G    
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVV--EQIHARILYQGLRDS 221

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK----SRWNSLISLAVQNGKSEKSFELF 221
             V + L++ Y +   GF +   + +R F  L+    S W ++IS   +N    ++  LF
Sbjct: 222 TVVCNPLIDLYSR--NGFVD---LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF 276

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M + G         ++L +  +++SLE+G  +H + +   F  D  V  AL+S+Y  L
Sbjct: 277 CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL 336

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            +L  A+ +F  MS +D V +N +I+   Q G+ ++++EL   M   G   D  T  + V
Sbjct: 337 GNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLV 396

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + S    +  G+Q+HA   + G      +  +L+++Y +C D+  A   F   + + VV
Sbjct: 397 VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVV 456

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
            W+ M+  Y   D    + R+F +M++E +  +  T  +IL  C+ +G LE  + +H   
Sbjct: 457 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K      + V + +   YAK G ++ A ++    +   KD+++W +MI+ Y ++    +
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI--RFAGKDVVSWTTMIAGYTQYNFDDK 574

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
               + QM    +R D +     ++AC     ++EG+ I  +   S G+        ++V
Sbjct: 575 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSDLPFQNALV 633

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
            L  R G ++E+  L  +     D   W  L+S  +     E A L     ++ E  +  
Sbjct: 634 TLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA-LRVFVRMNREGIDNN 691

Query: 642 NYVLLSNIYAAAGKWN 657
           N+   S + AA+   N
Sbjct: 692 NFTFGSAVKAASETAN 707



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 143/602 (23%), Positives = 280/602 (46%), Gaps = 44/602 (7%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
           E P  L+ + + +I +HG+ + L                  ++ VF ++       +  I
Sbjct: 15  EEPMFLRSVSSSFIFIHGVPRKL-----------------KTRTVFPTLCGTRRASFAAI 57

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVK 159
              +S+   +++  +    +  + + P   T  +++  C   +  LD   G K+H+Q++K
Sbjct: 58  SVYISEDESFQEKRI--DSVENRGIRPNHQTLKWLLEGCLKTNGSLD--EGRKLHSQILK 113

Query: 160 LGFDSFDDVGDALVEFYI-KCD--GGFENEKGMIQRKFKDLKSRWNSLIS-LAVQNGKSE 215
           LG DS   + + L +FY+ K D  G F+    M +R        WN +I  LA +N   E
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTI----FTWNKMIKELASRNLIGE 169

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRS----TVELKSLELGRIVHCVAVVSDFCKDLSVN 271
             F LF  M  E    + GT   +L +    +V    +E    +H   +         V 
Sbjct: 170 -VFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQ---IHARILYQGLRDSTVVC 225

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             L+ +YS+   ++ A+ +FD +  KD   W  MIS   ++    E++ L   M   G  
Sbjct: 226 NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIM 285

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
              +   + +S+   ++++E G+Q+H  VL+ G      V N+L+ +Y    +L  A  I
Sbjct: 286 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHI 345

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F ++  +  V+++++I G        +A+ LF  M L+G+E D  T+ +++ AC   G L
Sbjct: 346 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              + LH Y+ KLG  S + +  A+   YAKC  IE A + F E +++  +++ WN M+ 
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE--NVVLWNVMLV 463

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           AY    D    F+++ QM+  ++ P+  T+  +L  C+  G +E G  I  ++ ++  ++
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT-NFQ 522

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
            +    + ++++  + G +D A +++     K D   W  +++    ++  + A  T  +
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 632 LI 633
           ++
Sbjct: 582 ML 583


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/674 (31%), Positives = 364/674 (54%), Gaps = 9/674 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   +   Q   IHA+ +          + + LI  Y   G   L+++VF  +  
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQ-VYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++   ++ G  E  L ++ +M L  + P   T   ++ +C+ + D   G+++
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 154 HAQVVKLGFDSFDDVGD-ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           H+ ++K G  SFD + + +L++ Y+KC G  E    +     +     WN ++    Q  
Sbjct: 268 HSYLLKAGM-SFDYITEGSLLDLYVKC-GDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              KSFE+F  M+  G   +  T   +LR+      +ELG  +H +++ + F  D+ V+ 
Sbjct: 326 DLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSG 385

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MYSK   L+ A+ + + +  +D V W  MI+ Y Q  F +E+L     M   G   
Sbjct: 386 VLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D     +A S+ + +K +  G Q+HA V  +G    +S+ N+L+++Y  C     A  +F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             ++ K  ++W+ +I G+       +AL +F +M   G + +  T I+ + A  N+  ++
Sbjct: 506 REIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIK 565

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +HG ++K G  S + V  A+   Y KCG IE A  +F E  +  ++ ++WN++I++
Sbjct: 566 QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL--RNEVSWNTIITS 623

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            ++HG   +   L+ QMKQ  ++P+ +TF+G+L AC + GLVEEG   FK M   YG  P
Sbjct: 624 CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNP 683

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             +HYA +V++LGRAG +D AR  V +MP   +A +W  LLSACK+H   E+ EL A+ L
Sbjct: 684 IPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHL 743

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + +EP ++ +YVLLSN YA  GKW    ++R  ++DRG++K PG SWIE+   VH F+  
Sbjct: 744 LELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVG 803

Query: 693 DQSHPQADAIYTIL 706
           D+ HP +D IY  L
Sbjct: 804 DRLHPLSDQIYKFL 817



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 165/576 (28%), Positives = 295/576 (51%), Gaps = 14/576 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           +IHA  ++  GL  + ++ + LID YA  GL+  ++QVF  ++S + + +  +L   ++ 
Sbjct: 64  EIHATSVV-RGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G  ++   +Y QM   ++ P       V+ +C+    F  G  IHAQV K  F S   VG
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDL----KSRWNSLISLAVQNGKSEKSFELFKLMR 225
           +AL+  Y+    GF + K + +R F D+    +  +N+LIS   Q G  E + ++F  M+
Sbjct: 183 NALIALYL----GFGSFK-LAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           + G   D  T+ +LL +   +  L+ G+ +H   + +    D     +LL +Y K   +E
Sbjct: 238 LSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  +F+     + V+WN+M+ AY Q     +S E+   M  +G   + FT    + + +
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCT 357

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
               IE G+Q+H+  ++NG +  + V   LIDMY +   L+ ARKI + ++ + VVSW+S
Sbjct: 358 CTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTS 417

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI GYV HD   EAL  F EM+  GV  D + + +   AC  I A+     +H      G
Sbjct: 418 MIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG 477

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             +  S+   +   YA+CG  E A  LF E  I+ KD ITWN +IS + +   + Q   +
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFRE--IEHKDEITWNGLISGFGQSRLYKQALMV 535

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M Q+  + ++ TF+  ++A  N   +++G+ +     ++ G+    E   ++++L G
Sbjct: 536 FMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYG 594

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + G +++A+ +  +M  + +   W  ++++C  H  
Sbjct: 595 KCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGR 629


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/687 (33%), Positives = 364/687 (52%), Gaps = 61/687 (8%)

Query: 24  NQT-RPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLG 79
           NQ+ +P +      S+L LC + + +Q   +IH+  I  + +  + +L S L+  Y   G
Sbjct: 92  NQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHS-IIQSNDVEVDGVLGSKLVFMYVTCG 150

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            L   +++F+ + +    L+  ++   +K G + ++L ++K+M    +   E        
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVE-------- 202

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
                    S  K+           FD++GD                        +D+ S
Sbjct: 203 ---------SARKL-----------FDELGD------------------------RDVIS 218

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WNS+IS  V NG SEK  +LF+ M + G   D  T+++++        L LGR +H  A
Sbjct: 219 -WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYA 277

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + + F K+L++N  LL MYSK  +L  A  +F+ M ++  V W  MI+ Y + G    S+
Sbjct: 278 IKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV 337

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   M + G   D+FT    + + +    +E GK +H  +  N     + V N+L+DMY
Sbjct: 338 RLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY 397

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C  +  A  +F  ++ K +VSW++MI GY  +    EAL LF EM+    + + +T+ 
Sbjct: 398 AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMA 456

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            ILPAC ++ ALE  + +HG+ ++ G +    V  A+   Y KCG + +A  LFD   I 
Sbjct: 457 CILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD--MIP 514

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            KD+++W  MI+ Y  HG  S+    + +M+ S + PD ++F+ +L AC ++GL++EG  
Sbjct: 515 EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWG 574

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M+ +   EP  EHYA +V+LL RAG++ +A + +K MP +PDA +WG LL  C+++
Sbjct: 575 FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 634

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
            + +LAE  AE +  +EPEN G YVLL+NIYA A KW  V K+R  +  RGL+K PGCSW
Sbjct: 635 HDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSW 694

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTIL 706
           IEI   VH F   D SHP A+ I  +L
Sbjct: 695 IEIKGKVHIFVTGDSSHPLANKIELLL 721



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 183/402 (45%), Gaps = 62/402 (15%)

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           +NI I  + + G  + ++EL+    +     +L T  + +   + +K+I+ G+++H+ + 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDL--ELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLN----------------------------------- 386
            N  +    + + L+ MY  C DL                                    
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 387 --------------CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
                          ARK+FD +  + V+SW+SMI GYV++  S + L LF +M L G+ 
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D  T+++++  C N G L   + LHGY++K       ++N  +   Y+K G +  A ++
Sbjct: 249 TDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQV 308

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E +  + +++W SMI+ YA+ G      +L+ +M++  + PD+ T   +L AC   G
Sbjct: 309 F--ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTG 366

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYAS--MVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           L+E G+ +   +KE+   +   + + S  ++++  + G M +A  +  +M  K D   W 
Sbjct: 367 LLENGKDVHNYIKEN---KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWN 422

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
            ++     +S+  L        + M+  +  N + ++ I  A
Sbjct: 423 TMIGG---YSKNSLPNEALNLFVEMQYNSKPNSITMACILPA 461


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/734 (30%), Positives = 385/734 (52%), Gaps = 77/734 (10%)

Query: 27  RPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL--S 84
           +P +T +   + L+ C N +   +I ++ +IL G   +   +S L+    +   + L  S
Sbjct: 36  KPTITLSILETHLHNCHNLKQFNRILSQ-MILTGFISDTFAASRLLKFSTDSPFIGLDYS 94

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
            Q+F+ I + N  ++ T+++   +    EK LL+YK M   ++ P   TYP V+++C+  
Sbjct: 95  LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 154

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
           L    G++IH  V+K+GFDS   V + L+  Y  C    +  K   +    D  S WNS+
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS-WNSI 213

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           ++  V+ G  E++  +F  M                                        
Sbjct: 214 LAGYVKKGDVEEAKLIFDQMPQ-------------------------------------- 235

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
            +++  + +++ +  K+  + +A  LF++M +KD V W+ +IS Y Q+G  +E+L + + 
Sbjct: 236 -RNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 294

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC---- 380
           M  +G R D    ++ +S+ + +  ++ GK +H  V+R G +  V++ N+LI MY     
Sbjct: 295 MNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGE 354

Query: 381 ---------------------------ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
                                      +C  +  AR +FD +  K +VSWS++I GY  H
Sbjct: 355 IMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQH 414

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
           D   E L LF EM+L  +  D   +++++ AC ++ AL+  K++H Y  K GL     + 
Sbjct: 415 DCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILG 474

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           T +   Y KCGC+E A E+F+   ++ K + +WN++I   A +G   +   ++++MK + 
Sbjct: 475 TTLLDMYMKCGCVENALEVFN--GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNG 532

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           V P+ ITF+G+L AC + GLV+EGR  F  M E +G EP+ +HY  MV+LLGRAG ++EA
Sbjct: 533 VIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEA 592

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
            +L++ MP  PD   WG LL ACK H +TE+ E    KLI ++P++ G +VLLSNI+A+ 
Sbjct: 593 EKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASK 652

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           G W  V ++R  ++ +G+ KTPGCS IE   +VHEF A D++HP  + +  +L  +   +
Sbjct: 653 GDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRL 712

Query: 714 -MEGRRESSEELKF 726
            MEG    + E+  
Sbjct: 713 KMEGYAPDTNEVSL 726


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/665 (34%), Positives = 358/665 (53%), Gaps = 16/665 (2%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL 116
           I  G   ++  ++N+I  YA  G + ++ ++F   +  +++ + T++      G +E  L
Sbjct: 26  IKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETAL 85

Query: 117 LVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
              K M       A D Y F  +++  +C+     G+++H+ +VK+G++     G AL++
Sbjct: 86  EFLKSMKRYGF--AVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLD 143

Query: 175 FYIKCD---GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            Y KC+     FE  K +  R        WN+LIS   Q G    +F L   M +EG E 
Sbjct: 144 MYAKCERVEDAFEVFKSINIRN----SVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI 199

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D GT   LL    +    +L   VH   V      D +V  A+++ YS+  S+EDA+ +F
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 292 D-KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           D  +  +D V WN M++AY  +   +E+ +L + M   GF  D++T  + +S+     + 
Sbjct: 260 DGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQ 319

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC--EDLNCARKIFDSVKTKTVVSWSSMIK 408
             GK +H  V++ G ++ V + NSLI MY +   + ++ A  IF+S++ K  VSW+S++ 
Sbjct: 320 GQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILT 379

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G+     S +AL+ F  M+ + V +D      +L +C ++  L+  + +H   +K G   
Sbjct: 380 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEP 439

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V +++   Y+KCG IE A + FD    DS   I WNS+I  YA+HG       L+  
Sbjct: 440 NGFVASSLIFMYSKCGVIEDARKSFDATPKDSS--IAWNSLIFGYAQHGRGKIALDLFFL 497

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK   V+ D ITF+ +LTAC + GLVEEG    K M+  YG  P  EHYA M++LLGRAG
Sbjct: 498 MKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAG 557

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +DEA+ L++ MPF+PDA VW  LL AC+   + ELA   A  L+ +EPE    YVLLS+
Sbjct: 558 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSS 617

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           ++    +WN  A ++  +++RG+KK PG SWIE+   V  F A D+SHP  + IY  LG 
Sbjct: 618 MFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGE 677

Query: 709 LELEI 713
           L  EI
Sbjct: 678 LMEEI 682



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 168/317 (52%), Gaps = 1/317 (0%)

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           S     +L    + HC+A+ S     +     ++S Y+K   +  A  +F + S +D V 
Sbjct: 8   SQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVS 67

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN MI+ +   G  + +LE L  M R GF  D ++  + +  ++ +  +E G+Q+H+ ++
Sbjct: 68  WNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMV 127

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           + G +  V   ++L+DMY +CE +  A ++F S+  +  V+W+++I GY        A  
Sbjct: 128 KMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFW 187

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           L   M+LEGVE+D  T   +L    +    +    +H   +K GL S ++V  AI  +Y+
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG IE A  +FD   I+++D++TWNSM++AY  +    + F+L+ +M+     PD+ T+
Sbjct: 248 ECGSIEDAERVFD-GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTY 306

Query: 542 LGLLTACVNAGLVEEGR 558
             +++A        +G+
Sbjct: 307 TSVISAAFEGSHQGQGK 323



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 156/314 (49%), Gaps = 19/314 (6%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS------ITSPNSLLYGTIL 103
           Q+HA+ I+ HGL  +  + + +I +Y+  G +  +++VF+       + + NS+L   ++
Sbjct: 222 QVHAK-IVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLV 280

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
            N     + E+   ++ +M +    P   TY  VI +         G+ +H  V+K G +
Sbjct: 281 NN-----QEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLE 335

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
               + ++L+  Y+K      +E   I   F+ L+++    WNS+++   Q+G SE + +
Sbjct: 336 FLVPISNSLIAMYLKSHSKSMDEALNI---FESLENKDHVSWNSILTGFSQSGLSEDALK 392

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
            F+ MR +    D      +LRS  +L +L+LG+ VH + + S F  +  V ++L+ MYS
Sbjct: 393 FFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYS 452

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K   +EDA+  FD       + WN +I  Y Q G  K +L+L   M     + D  T +A
Sbjct: 453 KCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVA 512

Query: 340 AVSSISTMKNIEWG 353
            +++ S +  +E G
Sbjct: 513 VLTACSHIGLVEEG 526



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL      H  ++K G  +       I   YAKCG I +A ++F E     +D ++WN+M
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGE--TSQRDAVSWNTM 71

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ +   G++    +    MK+     D  +F  +L      G VE G+ +   M +  G
Sbjct: 72  IAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVK-MG 130

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           YE +    ++++++  +   +++A E+ K +  + ++  W  L+S 
Sbjct: 131 YEGNVFAGSALLDMYAKCERVEDAFEVFKSINIR-NSVTWNALISG 175


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 361/649 (55%), Gaps = 13/649 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G H +L + S+LI  Y + G +  ++ +F+ +   + +L+  +L    K G++   L  +
Sbjct: 207 GFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTF 266

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           ++M    + P   ++  ++  C+      +G ++H  V++ GF+S   V + ++  Y KC
Sbjct: 267 QEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKC 326

Query: 180 DGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
              F+       RK  D+  +     WN LI+  VQNG ++++  LFK M   G + DS 
Sbjct: 327 GNLFD------ARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSI 380

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T  + L S ++  SL+  + VH   V      D+ + +AL+ +Y K   +E A   F + 
Sbjct: 381 TFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQN 440

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           +  D  V   MIS Y  +G   E+L L   +++ G   +  T  + + + + + +++ GK
Sbjct: 441 TLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGK 500

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++H ++L+ G +    V +S+  MY +   L+ A + F  +  K  V W+ MI  +  + 
Sbjct: 501 ELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNG 560

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           +   A+ LF +M   G + D V++   L AC N  AL + K LH + ++    S + V +
Sbjct: 561 KPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVAS 620

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
            +   Y+KCG + +A  +FD   +D K+ ++WNS+I+AY  HG   +C  L+ +M ++ +
Sbjct: 621 TLIDMYSKCGKLALARSVFD--MMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGI 678

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD +TFL +++AC +AGLV+EG   F+ M E YG     EH+A MV+L GRAG + EA 
Sbjct: 679 QPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAF 738

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           + +K MPF PDA  WG LL AC++H   ELA+L ++ L+ ++P N+G YVLLSN++A AG
Sbjct: 739 DTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAG 798

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           +W  V K+R+ ++++G++K PG SWI++    H F AAD  HPQ+  IY
Sbjct: 799 EWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEIY 847



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 167/664 (25%), Positives = 330/664 (49%), Gaps = 22/664 (3%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q ++QIHA+ +++ G++ +L L S ++  Y           +F  +    SL +  +++ 
Sbjct: 93  QQVRQIHAK-VLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRG 151

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S  G ++  L+ + +M   ++ P + T+P+VI++C  L +    + +H     +GF   
Sbjct: 152 FSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMD 211

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             +G +L++ Y   D G+ ++   +   F +L  R    WN +++  V+NG    +   F
Sbjct: 212 LFIGSSLIKLYT--DNGYIHDAKYL---FDELPVRDCILWNVMLNGYVKNGDFNSALGTF 266

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + MR    + +S + + LL        +  G  +H + + S F  D +V   +++MYSK 
Sbjct: 267 QEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKC 326

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            +L DA+ +FD M   D V WN +I+ Y Q+GF  E++ L   MV SG + D  T  + +
Sbjct: 327 GNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFL 386

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            S+    ++++ K++H+ ++R+G  + V + ++L+D+Y +  D+  A K F       V 
Sbjct: 387 PSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVA 446

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
             ++MI GYV +  ++EAL LF  +  EG+  + +T+ ++LPAC  + +L+  K LH   
Sbjct: 447 VCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDI 506

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K GL ++  V ++I   YAK G +++A + F   ++  KD + WN MI +++++G    
Sbjct: 507 LKKGLENVCQVGSSITYMYAKSGRLDLAYQFF--RRMPVKDSVCWNLMIVSFSQNGKPEL 564

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ QM  S  + D ++    L+AC N   +  G+ +   +  +  +       ++++
Sbjct: 565 AIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRN-SFISDTFVASTLI 623

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET-ELAELTAEKL-ISMEPEN 639
           ++  + G +  AR +   M +K +   W  +++A   H    E  +L  E +   ++P++
Sbjct: 624 DMYSKCGKLALARSVFDMMDWKNEVS-WNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDH 682

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE-IGKLVHEFWAADQSHPQ 698
               V++S    A     G+   R    + G+     C+ +E    +V  +  A + H  
Sbjct: 683 VTFLVIMSACGHAGLVDEGIYYFRCMTEEYGI-----CARMEHFACMVDLYGRAGRLHEA 737

Query: 699 ADAI 702
            D I
Sbjct: 738 FDTI 741


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 350/615 (56%), Gaps = 12/615 (1%)

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           L K G  ++ L +   M LQ      D +  +++ C+ L     G ++HA ++K G    
Sbjct: 22  LCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 81

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             + + L+  Y KC G   + +    R F  ++ R    W ++I   V   K+ ++F+ +
Sbjct: 82  RYLENTLLSMYAKC-GSLTDAR----RVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCY 136

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M++ G + D  T ++LL +    + L+LG+ VH   V +    +  V T+L+ MY+K 
Sbjct: 137 ETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKC 196

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +  A+++FD++ +K+ V W ++I+ Y Q G    +LELL  M ++    +  T  + +
Sbjct: 197 GDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASIL 256

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
              +T   +E GK++H  ++++G   ++ V NSLI MYC+C  L  ARK+F  +  + VV
Sbjct: 257 QGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVV 316

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           +W++M+ GY       EA+ LF  M+ +G++ D +T  ++L +C +   L+  K +H   
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQL 376

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY-AKHGDWS 520
           +  G N    + +A+   YAKCG ++ A  +F++  +  ++++ W ++I+   A+HG   
Sbjct: 377 VHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ--MSERNVVAWTAIITGCCAQHGRCR 434

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +  + + QMK+  ++PD +TF  +L+AC + GLVEEGR  F+ M   YG +P  EHY+  
Sbjct: 435 EALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 494

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGRAGH++EA  ++  MPF P   VWG LLSAC++HS+ E  E  AE ++ ++P++ 
Sbjct: 495 VDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDD 554

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G YV LS+IYAAAG++    K+R  +  R + K PG SWIE+   VH F   D+SHP+++
Sbjct: 555 GAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESE 614

Query: 701 AIYTILGILELEIME 715
            IY  LG L  +I E
Sbjct: 615 QIYVELGKLTEQIKE 629



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 226/424 (53%), Gaps = 5/424 (1%)

Query: 194 FKDLKSRWNSL-ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           F+ +++  NS  +S+  + G+ +++  +   M ++G    S     LL+    L+SLE G
Sbjct: 7   FRKVETLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQG 66

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH   + S    +  +   LLSMY+K  SL DA+ +FD + D++ V W  MI A+   
Sbjct: 67  REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAG 126

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               E+ +    M  +G + D  T ++ +++ +  + ++ G+++H  ++  G + +  V 
Sbjct: 127 NKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG 186

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
            SL+ MY +C D++ AR IFD +  K VV+W+ +I GY    Q   AL L   M+   V 
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            + +T  +IL  C    ALEH K +H Y ++ G      V  ++   Y KCG +E A +L
Sbjct: 247 PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKL 306

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F +  +  +D++TW +M++ YA+ G   +   L+ +M+Q  ++PD +TF  +LT+C +  
Sbjct: 307 FSD--LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPA 364

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            ++EG+ I +++  + GY       +++V++  + G MD+A  LV +   + +   W  +
Sbjct: 365 FLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKCGSMDDA-SLVFNQMSERNVVAWTAI 422

Query: 613 LSAC 616
           ++ C
Sbjct: 423 ITGC 426



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 149/598 (24%), Positives = 279/598 (46%), Gaps = 39/598 (6%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            LL  C   + L+Q   +HA  I+  G+  N  L + L+  YA  G L+ +++VF+SI  
Sbjct: 52  GLLQECARLRSLEQGREVHA-AILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRD 110

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +++      +  +    Y+ M L    P + T+  ++ + +       G+K+
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H ++V+ G +    VG +LV  Y KC G     + +  R  +     W  LI+   Q G+
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKC-GDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            + + EL + M+      +  T  ++L+      +LE G+ VH   + S + ++L V  +
Sbjct: 230 VDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNS 289

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MY K   LE+A+ LF  +  +D V W  M++ Y Q GF  E++ L   M + G + D
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPD 349

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T  + ++S S+   ++ GK++H  ++  G +  V + ++L+ MY +C  ++ A  +F+
Sbjct: 350 KMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFN 409

Query: 394 SVKTKTVVSWSSMIKGYVT-HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            +  + VV+W+++I G    H +  EAL  F +MK +G++ D VT  ++L AC ++G +E
Sbjct: 410 QMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVE 469

Query: 453 H-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII----TWN 507
              K+     +  G+  +    +       + G +E A     E  I S   I     W 
Sbjct: 470 EGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEA-----ENVILSMPFIPGPSVWG 524

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KE 566
           +++SA   H D  +  +    + + D   D   ++ L +    AG  E+   + + M K 
Sbjct: 525 ALLSACRVHSDVERGERAAENVLKLDPDDDG-AYVALSSIYAAAGRYEDAEKVRQVMEKR 583

Query: 567 SYGYEPSQEHYASMVNLLGRAG--HMDEAR---------------ELVKDMPFKPDAR 607
               EP Q    S + + G+    H+++                 E +K+M + PD R
Sbjct: 584 DVVKEPGQ----SWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTR 637


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/640 (32%), Positives = 359/640 (56%), Gaps = 8/640 (1%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           G L+L++QVF+ I +P++  Y  +++  S  G +   + +Y+ M    + P + T+PFV+
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           ++CS L D  +G  IHA    +G  +   V  AL++ YI+C           +   +D+ 
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 199 SRWNSLISLAVQNGKSEKSF-ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH- 256
           + WN++++    +G    +   L  +    G   ++ TL++LL    +  +L  G  VH 
Sbjct: 167 A-WNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 257 -CVAVVSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
            C+    D  ++ + + TALL MY+K   L  A  +F  M+ ++ V W+ +I  +     
Sbjct: 226 YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDR 285

Query: 315 PKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             E+  L   M+  G      T++A A+   +++ ++  G Q+HA + ++G    ++  N
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN 345

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           SL+ MY +   +N A  +FD +  K  +S+ +++ GYV + ++ EA  +F +M+   V+ 
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQP 405

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D  T+++++PAC ++ AL+H +  HG  +  GL   +S+  ++   YAKCG I+++ ++F
Sbjct: 406 DIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVF 465

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D  K+ ++DI++WN+MI+ Y  HG   +   L+  MK     PD +TF+ L+ AC ++GL
Sbjct: 466 D--KMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGL 523

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V EG+  F  M   YG  P  EHY  MV+LL R G +DEA + ++ MP K D RVWG LL
Sbjct: 524 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALL 583

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            AC++H   +L +  +  +  + PE  GN+VLLSNI++AAG+++  A++R   + +G KK
Sbjct: 584 GACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKK 643

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +PGCSWIEI   +H F   DQSHP +  IY  L  + ++I
Sbjct: 644 SPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDI 683



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 220/451 (48%), Gaps = 25/451 (5%)

Query: 18  FLRFPANQ-TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           + R P N+ T P +    S +L +LC      + IHA    + GLH +L +S+ LID Y 
Sbjct: 92  YFRVPPNKYTFPFVLKACS-ALADLCAG----RTIHAHAAAV-GLHTDLFVSTALIDLYI 145

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTYP 135
                  +  VF  +   + + +  +L   +  G Y   +     M  +  + P   T  
Sbjct: 146 RCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLV 205

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD---VGDALVEFYIKCDGGFENEKGMIQ- 191
            ++   +       G  +HA  ++   D  ++   +G AL++ Y KC       K ++  
Sbjct: 206 SLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC-------KHLVYA 258

Query: 192 -RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTVE 245
            R F  +  R    W++LI   V   +  ++F LFK M +EG  F S T + + LR    
Sbjct: 259 CRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCAS 318

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L  L +G  +H +   S    DL+   +LLSMY+K   + +A MLFD+++ KD + +  +
Sbjct: 319 LADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGAL 378

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           +S Y Q+G  +E+  +   M     + D+ T ++ + + S +  ++ G+  H +V+  G 
Sbjct: 379 LSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGL 438

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
             + S+ NSLIDMY +C  ++ +R++FD +  + +VSW++MI GY  H    EA  LF  
Sbjct: 439 ALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLS 498

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKY 456
           MK +G E D VT I ++ AC + G +   K+
Sbjct: 499 MKNQGFEPDDVTFICLIAACSHSGLVTEGKH 529


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/660 (31%), Positives = 361/660 (54%), Gaps = 4/660 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIHA   +  GL  ++   S L+D Y     L  + + F+ +   NS+ +G  +    + 
Sbjct: 172 QIHA-LAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQN 230

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            +Y + + ++ QM    +  ++  Y    RSC+ +    +  ++HA  +K  F S   VG
Sbjct: 231 EQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVG 290

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            A+V+ Y K     +  +  I     ++++  N+++   V+ G   ++ +LF+ M   G 
Sbjct: 291 TAIVDVYAKAGNLVDARRAFIGLPHHNVET-CNAMMVGLVRTGLGAEAMQLFQFMTRSGV 349

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
            FD  +L  +  +  E+K    G  VHC+AV S F  D+ V  A+L +Y K  +L +A +
Sbjct: 350 GFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYL 409

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F +M  +D V WN +I+A  Q+   ++++  L  M+RSG   D FT  + + + + +++
Sbjct: 410 VFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQS 469

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E+G  +H   +++G      V ++++DMYC+C  +  A+K+ D +  + +VSW+S+I G
Sbjct: 470 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISG 529

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +    QS EA R FSEM   GV+ D  T   +L  C N+  +E  K +HG  +K  +   
Sbjct: 530 FSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD 589

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             +++ +   YAKCG   M   L   EK    D ++WN+MI  YA HG   +  +++ +M
Sbjct: 590 EYISSTLVDMYAKCG--NMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERM 647

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           ++++V P+  TF+ +L AC + GL+++G   F  M   Y   P  EH+A MV++LGR+  
Sbjct: 648 QRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKG 707

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
             EA E ++ MP + DA VW  LLS CK+  + E+AE  A  ++ ++P++A  Y+LLSN+
Sbjct: 708 PQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVLRLDPDDASVYILLSNV 767

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA +GKW  V++ R  +R   L+K PGCSWIE+   +H F   D+ HP++  +Y +L  L
Sbjct: 768 YAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMHGFLVGDKVHPRSKEVYEMLNSL 827



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 163/646 (25%), Positives = 306/646 (47%), Gaps = 41/646 (6%)

Query: 5   LPP-ACSLQSGHVKFLRFP------ANQTRPHMT---ATHS------FSLLNLCENPQHL 48
           LPP ACS  +G V    F       A+  R  +T   A H+      F       N   L
Sbjct: 3   LPPHACSAGAGFVATATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNC--L 60

Query: 49  QQIHAR---YIILHGL-----HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG 100
            Q++AR       HG+     H++ +  + ++ +Y + G    +  +F ++  P+ + + 
Sbjct: 61  LQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWN 120

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           T++    + G +  ++ +  +M+ + +     T   +++SC  L D   G +IHA  VK 
Sbjct: 121 TLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKT 180

Query: 161 GFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           G ++    G ALV+ Y KC   D       GM +R        W + I+  VQN +  + 
Sbjct: 181 GLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERN----SVSWGAAIAGCVQNEQYTRG 236

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            ELF  M+  G         +  RS   +  L   R +H  A+ + F  D  V TA++ +
Sbjct: 237 MELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDV 296

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y+K  +L DA+  F  +   +    N M+    ++G   E+++L   M RSG   D+ + 
Sbjct: 297 YAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISL 356

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
               S+ + +K    G Q+H   +++G D  V V N+++D+Y +C+ L  A  +F  ++ 
Sbjct: 357 SGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 416

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +  VSW+++I     ++   + +   +EM   G+E D  T  ++L AC  + +LE+   +
Sbjct: 417 RDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVV 476

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           HG ++K GL   + V++ +   Y KCG I  A +L D  +I  +++++WNS+IS ++   
Sbjct: 477 HGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHD--RIGGQELVSWNSIISGFSLTK 534

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM--KESYGYEPSQE 575
              +  + +++M    V+PD  T+  +L  C N   +E G+ I  ++  +E  G E    
Sbjct: 535 QSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYIS- 593

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             +++V++  + G+M ++  L+ +   K D   W  ++    +H +
Sbjct: 594 --STLVDMYAKCGNMPDSL-LMFEKARKLDFVSWNAMICGYALHGQ 636



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/521 (24%), Positives = 230/521 (44%), Gaps = 38/521 (7%)

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKS------ 199
             +G+  HA+++  GF     V + L++ Y +C GG  +  G+      +D  S      
Sbjct: 35  LTTGQAAHARMLVSGFMPTTFVSNCLLQMYARC-GGTAHAHGVFDTMPHRDTVSWNTMLT 93

Query: 200 ------------------------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
                                    WN+LIS   Q+G    S  L   M   G   D  T
Sbjct: 94  AYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTT 153

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L  LL+S   L  L LG  +H +AV +    D+   +AL+ MY K  SL+DA   F  M 
Sbjct: 154 LAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMG 213

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           +++ V W   I+   Q+      +EL + M R G         +A  S + M  +   +Q
Sbjct: 214 ERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQ 273

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +HA+ ++N       V  +++D+Y +  +L  AR+ F  +    V + ++M+ G V    
Sbjct: 274 LHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGL 333

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA++LF  M   GV  D +++  +  AC  +        +H  ++K G +    V  A
Sbjct: 334 GAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNA 393

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           I   Y KC  +  A  +F E  ++ +D ++WN++I+A  ++  +        +M +S + 
Sbjct: 394 ILDLYGKCKALVEAYLVFQE--MEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGME 451

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIF-KEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           PD  T+  +L AC     +E G ++  K +K   G +      +++V++  + G + EA+
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVS--STVVDMYCKCGAITEAQ 509

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           +L  D     +   W  ++S   +  ++E A+    +++ M
Sbjct: 510 KL-HDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDM 549



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 179/378 (47%), Gaps = 15/378 (3%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +S NT +L+ Y      + A  LF  M D D V WN +IS Y Q G  + S+ L M M R
Sbjct: 86  VSWNT-MLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSR 144

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T    + S   + ++  G Q+HA  ++ G +  V   ++L+DMY +C  L+ 
Sbjct: 145 RGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDD 204

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A + F  +  +  VSW + I G V ++Q    + LF +M+  G+ V      +   +C  
Sbjct: 205 ALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAA 264

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK----IDSKDI 503
           +  L   + LH +++K   +S   V TAI   YAK      AG L D  +    +   ++
Sbjct: 265 MPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAK------AGNLVDARRAFIGLPHHNV 318

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
            T N+M+    + G  ++  +L+  M +S V  D+I+  G+ +AC       +G  +   
Sbjct: 319 ETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCL 378

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS--E 621
             +S G++       ++++L G+   + EA  + ++M  + D+  W  +++A + +   E
Sbjct: 379 AVKS-GFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQNECYE 436

Query: 622 TELAELTAEKLISMEPEN 639
             +A L       MEP++
Sbjct: 437 DTIAHLNEMLRSGMEPDD 454


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/638 (34%), Positives = 361/638 (56%), Gaps = 5/638 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA ++I  GL  ++ + S L+ +YA+ G +  ++++F+ +    +LLY  ++K    
Sbjct: 41  KQLHA-HLITSGL-LSIDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIA 98

Query: 109 FGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
            G+Y + + V+ +M   +   P   TYPFVI++CS LL    G  +H   +   F S   
Sbjct: 99  KGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLF 158

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V ++L+  Y+ C    E  K     K K + S WN++I+   +NG +  +  +F  M   
Sbjct: 159 VLNSLLAMYMNCGEVEEARKVFDAMKEKSVVS-WNTMINGYFKNGFANTALVVFNQMVDS 217

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E D  +++++L +   LK LE+GR VH +       K + V+ AL+ MY+K  S+++A
Sbjct: 218 GVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEA 276

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           +++FD M ++D V W  MI+ Y  +G  K +L L   M   G R +  T    + + +++
Sbjct: 277 RLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASL 336

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            N++ G+ +H  V++     +V+V  SLIDMY +C  L  +  +F     K  V W++++
Sbjct: 337 NNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALL 396

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            G V +  + EA+ LF +M +EGVE++  T  ++LPA   +  L+ V  ++ Y M+ G  
Sbjct: 397 SGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFV 456

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S   V T++   Y+KCG +E A ++F+   +D +DI  W+ +I+ Y  HG       L+ 
Sbjct: 457 SNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFK 516

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           QM QS V+P+ +TF  +L +C +AG+V++G  +FK M + +   P+ +HY  MV+LLGRA
Sbjct: 517 QMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRA 576

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G MDEA +L+K MPF P   VWG LL AC MH   EL E+ A  L  +EP N GNYVLL+
Sbjct: 577 GRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLA 636

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
            +YAA G+W     +R  + D GL+K P  S IE G +
Sbjct: 637 KLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIEAGTV 674


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/674 (31%), Positives = 363/674 (53%), Gaps = 9/674 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   +   Q   IHA+ +          + + LI  Y   G   L+++VF  +  
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQ-VYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLF 207

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++   ++ G  E  L ++ +M L  + P   T   ++ +C+ + D   G+++
Sbjct: 208 CDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267

Query: 154 HAQVVKLGFDSFDDVGD-ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           H+ ++K G  SFD + + +L++ Y+KC G  E    +     +     WN ++    Q  
Sbjct: 268 HSYLLKAGM-SFDYITEGSLLDLYVKC-GDIETAHDIFNLGDRTNVVLWNLMLVAYGQIS 325

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              KSFE+F  M+  G   +  T   +LR+      +ELG  +H +++ + F  D+ V+ 
Sbjct: 326 DLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSG 385

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MYSK   L+ A+ + + +  +D V W  MI+ Y Q  F +E+L     M   G   
Sbjct: 386 VLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWP 445

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D     +A S+ + +K +  G Q+HA V  +G    +S+ N+L+++Y  C     A  +F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +  K  ++W+ +I G+       +AL +F +M   G + +  T I+ + A  N+  ++
Sbjct: 506 REIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIK 565

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +HG ++K G  S + V  A+   Y KCG IE A  +F E  +  ++ ++WN++I++
Sbjct: 566 QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL--RNEVSWNTIITS 623

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            ++HG   +   L+ QMKQ  ++P+ +TF+G+L AC + GLVEEG   FK M   YG  P
Sbjct: 624 CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNP 683

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             +HYA +V++LGRAG +D AR  V +MP   +A +W  LLSACK+H   E+ EL A+ L
Sbjct: 684 IPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHL 743

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + +EP ++ +YVLLSN YA  GKW    ++R  ++DRG++K PG SWIE+   VH F+  
Sbjct: 744 LELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVG 803

Query: 693 DQSHPQADAIYTIL 706
           D+ HP +D IY  L
Sbjct: 804 DRLHPLSDQIYKFL 817



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 166/576 (28%), Positives = 295/576 (51%), Gaps = 14/576 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           +IHA  ++  GL  + ++ + LID YA  GL+  ++QVF  ++S + + +  +L   ++ 
Sbjct: 64  EIHATSVV-RGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G  ++   +Y QM   ++ P       V+ +C+    F  G  IHAQV K  F S   VG
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDL----KSRWNSLISLAVQNGKSEKSFELFKLMR 225
           +AL+  Y+    GF + K + +R F D+    +  +N+LIS   Q G  E + ++F  M+
Sbjct: 183 NALIALYL----GFGSFK-LAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           + G   D  T+ +LL +   +  L+ G+ +H   + +    D     +LL +Y K   +E
Sbjct: 238 LSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  +F+     + V+WN+M+ AY Q     +S E+   M  +G   + FT    + + +
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCT 357

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
               IE G+Q+H+  ++NG +  + V   LIDMY +   L+ ARKI + ++ + VVSW+S
Sbjct: 358 CTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTS 417

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI GYV HD   EAL  F EM+  GV  D + + +   AC  I A+     +H      G
Sbjct: 418 MIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSG 477

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             +  S+   +   YA+CG  E A  LF E  ID KD ITWN +IS + +   + Q   +
Sbjct: 478 YAADISIWNTLVNLYARCGRSEEAFSLFRE--IDHKDEITWNGLISGFGQSRLYEQALMV 535

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M Q+  + ++ TF+  ++A  N   +++G+ +     ++ G+    E   ++++L G
Sbjct: 536 FMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYG 594

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + G +++A+ +  +M  + +   W  ++++C  H  
Sbjct: 595 KCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQHGR 629


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/685 (33%), Positives = 386/685 (56%), Gaps = 8/685 (1%)

Query: 27  RPHMTATHSFSLLNLCENPQ-HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           RP      +   L++  NP  H + IH + II+ GL  +  L++ LI+  +    +  ++
Sbjct: 46  RPKRREFANLLQLSISRNPIIHYKIIHGQ-IIVSGLQSDTFLANILINVCSKSDRVDNAR 104

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCL 144
            VF+ +   N + + +++   S+ G  E+ L+V+  +  +S  +P E     VIR+C+ L
Sbjct: 105 VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 164

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                G ++H  VV+ GFD    VG +L++FY K +G  E  + +  +  +     W ++
Sbjct: 165 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSK-NGNIEEARLVFDQLSEKTAVTWTTI 223

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I+   + G+S  S ELF  MR      D   + ++L +   L+ LE G+ +H   +    
Sbjct: 224 IAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT 283

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+SV   L+  Y+K   ++  + LFD+M  K+ + W  MIS Y Q+ F  E+++L   
Sbjct: 284 EMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 343

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M R G++ D F   + ++S  + + +E G+Q+HA  ++   +    V N LIDMY +   
Sbjct: 344 MNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL 403

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           L  A+K+FD +  + V+S+++MI+GY + ++  EAL LF EM++   + +  T   ++ A
Sbjct: 404 LIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITA 463

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
             N+ +L H +  H   +K+GL+    V  A+   YAKCG IE A ++F+      +D++
Sbjct: 464 ASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIW--RDVV 521

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WNSMIS +A+HG+  +   ++ +M +  ++P+ +TF+ +L+AC +AG VE+G   F  M
Sbjct: 522 CWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM 581

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
              +G +P  EHYA +V+LLGR+G + EA+E ++ MP +P A VW  LLSAC++    EL
Sbjct: 582 P-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVEL 640

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            +  AE  IS +P+++G+Y+LLSNI+A+ G W  V K+R  +    + K PG SWIE+  
Sbjct: 641 GKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 700

Query: 685 LVHEFWAADQSHPQADAIYTILGIL 709
            V+ F A D +H +AD I ++L IL
Sbjct: 701 KVNVFIARDTTHREAD-IGSVLDIL 724


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/658 (32%), Positives = 365/658 (55%), Gaps = 8/658 (1%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           + +N +  +  + SY   G +  +  +F ++   ++ ++  +++     G +   +  Y 
Sbjct: 56  VERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYH 115

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           +M    +     TYPFVI++C  L D   GE++H +V+K G D    +G++L+  Y K  
Sbjct: 116 RMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKI- 174

Query: 181 GGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           G  E+ + M+ R+   +DL S WNS+IS  V  G   +S   F+ M+  G + D  ++I 
Sbjct: 175 GCIESAE-MVFREMPVRDLVS-WNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIG 232

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L +      L  G+ +HC  + S    D+ V T+L+ MY+K   ++ A+ LFD+++DK 
Sbjct: 233 ILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKS 292

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMH 357
            V WN MI  Y  +    ES   +  M   G    D  T I  +   + ++ I  GK +H
Sbjct: 293 IVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVH 352

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              +RNG    + +  +L+DMY EC  L  A  +F  +  + ++SW++MI  Y  + ++ 
Sbjct: 353 GFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENR 412

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +A+ LF ++  + ++ D  TI +ILPA   + +L   + +HGY  KL L+S + V+ +I 
Sbjct: 413 KAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIV 472

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y KCG +  A E+FD  ++  KD+I+WN++I AYA HG      +L+++M++    P+
Sbjct: 473 FMYGKCGNLLRAREIFD--RMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPN 530

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
             TF+ LL +C  AGLV EG   F  MK  Y   P  EHY  +++L+GR G++D A+  +
Sbjct: 531 GSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFI 590

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++MP  P AR+WG LL+A +   + ELAE+ AE ++S+E +N G YVLLSN+YA AG+W 
Sbjct: 591 EEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWE 650

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            V +++  ++  GL+K+ GCS +++      F   D+S  + + +Y +L I+  +I E
Sbjct: 651 DVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGE 708



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 123/272 (45%), Gaps = 14/272 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +H  + I +G   +L+L + L+D Y   G L  ++ +F  +   N + +  ++ + +K
Sbjct: 349 KSVHG-FAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTK 407

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE  K + +++ +  +++ P   T   ++ + + L      E+IH  V KL  DS   V
Sbjct: 408 NGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFV 467

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +++V  Y KC       +   +  FKD+ S WN++I     +G    S ELF  MR +G
Sbjct: 468 SNSIVFMYGKCGNLLRAREIFDRMTFKDVIS-WNTVIMAYAIHGFGRISIELFSEMREKG 526

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA------LLSMYSKLA 282
            E +  T ++LL     L     G +       +   +D ++N        +L +  +  
Sbjct: 527 FEPNGSTFVSLL-----LSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTG 581

Query: 283 SLEDAKMLFDKMSDKDRV-VWNIMISAYYQSG 313
           +L+ AK   ++M       +W  +++A    G
Sbjct: 582 NLDHAKNFIEEMPLAPTARIWGSLLTASRNKG 613


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/676 (34%), Positives = 375/676 (55%), Gaps = 22/676 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + I   G  +++ + ++L+D Y     +   ++VF+ +   N + + ++L    +
Sbjct: 112 KQVHCQCIKC-GFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L ++ QM L+ + P   T+  V+   +       G ++H  V+K G DS   V
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G+++V  Y K      + K +    F  +++R    WNS+I+  V NG   ++FELF  M
Sbjct: 231 GNSMVNMYSK-SLMVSDAKAV----FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLA 282
           R+EG +        +++    +K +   + +HC  +   SDF  DL++ TAL+  YSK +
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF--DLNIKTALMVAYSKCS 343

Query: 283 SLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            ++DA  LF  M     VV W  +IS Y Q+G    ++ L   M R G R + FT     
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFT----Y 399

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
           S+I T        Q+HA V++   +   SV  +L D Y +  D N A KIF+ +  K +V
Sbjct: 400 STILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIV 459

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN-IGALEHVKYLHGY 460
           +WS+M+ GY        A+++F ++  EGVE +  T  ++L AC     ++E  K  H  
Sbjct: 460 AWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC 519

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           S+K G ++   V++A+   YAK G IE A E+F + ++D +D+++WNSMIS YA+HG   
Sbjct: 520 SIKSGFSNALCVSSALVTMYAKRGNIESANEVF-KRQVD-RDLVSWNSMISGYAQHGCGK 577

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +  K++ +M+  ++  D ITF+G+++AC +AGLV EG+  F  M + Y   P+ EHY+ M
Sbjct: 578 KSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCM 637

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+L  RAG +++A +L+  MPF   A +W  LL+AC++H   +L EL AEKLIS++P+++
Sbjct: 638 VDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDS 697

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLSNIYA AG W   AK+R  +  + +KK  G SWIE+      F A D SHPQ+D
Sbjct: 698 AAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSD 757

Query: 701 AIYTILGILELEIMEG 716
            IY  L  L + + + 
Sbjct: 758 RIYLKLEELSIRLKDA 773



 Score =  235 bits (600), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 144/485 (29%), Positives = 256/485 (52%), Gaps = 11/485 (2%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           V++ C CL D I G+++H Q +K GF     VG +LV+ Y+K +   + E+   + + K+
Sbjct: 98  VLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN 157

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           + S W SL++   QNG +E++ +LF  M++EG + +  T   +L       ++E G  VH
Sbjct: 158 VVS-WTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + + S     + V  ++++MYSK   + DAK +FD M +++ V WN MI+ +  +G   
Sbjct: 217 TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDL 276

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+ EL   M   G +         +   + +K + + KQ+H  V++NGSD+ +++  +L+
Sbjct: 277 EAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALM 336

Query: 377 DMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
             Y +C +++ A K+F  +   + VVSW+++I GYV + ++  A+ LF +M+ EGV  + 
Sbjct: 337 VAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNH 396

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   IL A   +   +    +H   +K    +  SV TA+  SY+K G    A ++F  
Sbjct: 397 FTYSTILTANAAVSPSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIF-- 450

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN-AGLV 554
           E ID KDI+ W++M+S YA+ GD     K++ Q+ +  V P+  TF  +L AC      V
Sbjct: 451 ELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASV 510

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           E+G+  F       G+  +    +++V +  + G+++ A E+ K      D   W  ++S
Sbjct: 511 EQGK-QFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMIS 568

Query: 615 ACKMH 619
               H
Sbjct: 569 GYAQH 573



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 233/427 (54%), Gaps = 7/427 (1%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           SR N L+    +N +++++  LF  +R  G+  D  +L  +L+    L    +G+ VHC 
Sbjct: 58  SRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQ 117

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            +   F +D+SV T+L+ MY K  S+ED + +FD+M  K+ V W  +++ Y Q+G  +++
Sbjct: 118 CIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQA 177

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           L+L   M   G + + FT  A +  ++    +E G Q+H  V+++G D  + V NS+++M
Sbjct: 178 LKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNM 237

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +   ++ A+ +FDS++ +  VSW+SMI G+VT+   LEA  LF  M+LEGV++     
Sbjct: 238 YSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIF 297

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
             ++  C NI  +   K LH   +K G +   ++ TA+ ++Y+KC  I+ A +LF     
Sbjct: 298 ATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH- 356

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             +++++W ++IS Y ++G   +   L+ QM++  VRP+  T+  +LTA  NA  V   +
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA--NAA-VSPSQ 413

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
           I    +K +Y   PS     ++ +   + G  +EA ++ + +  K D   W  +LS    
Sbjct: 414 IHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELIDEK-DIVAWSAMLSGYAQ 470

Query: 619 HSETELA 625
             + E A
Sbjct: 471 MGDIEGA 477


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 350/620 (56%), Gaps = 23/620 (3%)

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           L K G  ++ L +   M LQ      D +  +++ C+ L     G ++HA ++K G    
Sbjct: 71  LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 130

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             + + L+  Y KC G   + +    R F  ++ R    W ++I   V   ++ ++++ +
Sbjct: 131 RYLENTLLSMYAKC-GSLTDAR----RVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCY 185

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M++ G + D  T ++LL +    + L++G+ VH     +    +  V T+L+ MY+K 
Sbjct: 186 ETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKC 245

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +  A+++FDK+ +K+ V W ++I+ Y Q G    +LELL  M ++    +  T  + +
Sbjct: 246 GDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSIL 305

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
              +T   +E GK++H  ++++G   ++ V N+LI MYC+C  L  ARK+F  +  + VV
Sbjct: 306 QGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVV 365

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH--- 458
           +W++M+ GY       EA+ LF  M+ +G++ D +T  + L +C +   L+  K +H   
Sbjct: 366 TWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQL 425

Query: 459 ---GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
              GYS+ + L S      A+   YAKCG ++ A  +F++  +  ++++ W +MI+  A+
Sbjct: 426 VHAGYSLDVYLQS------ALVSMYAKCGSMDDARLVFNQ--MSERNVVAWTAMITGCAQ 477

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   +  + + QMK+  ++PD +TF  +L+AC + GLVEEGR  F+ M   YG +P  E
Sbjct: 478 HGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 537

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY+  V+LLGRAGH++EA  ++  MPF+P   VWG LLSAC++HS+ E  E  AE ++ +
Sbjct: 538 HYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKL 597

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           +P++ G YV LSNIYAAAG++    K+R  +  R + K PG SWIE+   VH F   D+S
Sbjct: 598 DPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 657

Query: 696 HPQADAIYTILGILELEIME 715
           HP+A  IY  LG L  +I E
Sbjct: 658 HPEAKEIYAELGKLTEQIKE 677



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 242/482 (50%), Gaps = 7/482 (1%)

Query: 194 FKDLKSRWNSL-ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           F+ + +  NS  +S+  + G+ +++  +   M ++G    S     LL+    L+SLE G
Sbjct: 56  FRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQG 115

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH   + S    +  +   LLSMY+K  SL DA+ +FD + D++ V W  MI A+   
Sbjct: 116 REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAG 175

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               E+ +    M  +G + D  T ++ +++ +  + ++ G+++H  + + G + +  V 
Sbjct: 176 NQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG 235

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
            SL+ MY +C D++ A+ IFD +  K VV+W+ +I GY    Q   AL L  +M+   V 
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            + +T  +IL  C    ALEH K +H Y ++ G      V  A+   Y KCG ++ A +L
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKL 355

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F +  +  +D++TW +M++ YA+ G   +   L+ +M+Q  ++PD +TF   LT+C +  
Sbjct: 356 FGD--LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPA 413

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            ++EG+ I +++  + GY       +++V++  + G MD+AR +   M  + +   W  +
Sbjct: 414 FLQEGKSIHQQLVHA-GYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSER-NVVAWTAM 471

Query: 613 LSACKMHSETE--LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
           ++ C  H      L      K   ++P+      +LS          G    R+   D G
Sbjct: 472 ITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYG 531

Query: 671 LK 672
           +K
Sbjct: 532 IK 533



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 237/486 (48%), Gaps = 7/486 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            LL  C   + L+Q   +HA  I+  G+  N  L + L+  YA  G L+ +++VF+ I  
Sbjct: 101 GLLQECARLRSLEQGREVHAA-ILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRD 159

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +++      +  +    Y+ M L    P + T+  ++ + +       G+K+
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H ++ K G +    VG +LV  Y KC G     + +  +  +     W  LI+   Q G+
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKC-GDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            + + EL + M+      +  T  ++L+      +LE G+ VH   + S + +++ V  A
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNA 338

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MY K   L++A+ LF  +  +D V W  M++ Y Q GF  E+++L   M + G + D
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPD 398

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T  +A++S S+   ++ GK +H  ++  G    V + ++L+ MY +C  ++ AR +F+
Sbjct: 399 KMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFN 458

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  + VV+W++MI G   H +  EAL  F +MK +G++ D VT  ++L AC ++G +E 
Sbjct: 459 QMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEE 518

Query: 454 -VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K+     +  G+  +    +       + G +E A  +           + W +++SA
Sbjct: 519 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSV-WGALLSA 577

Query: 513 YAKHGD 518
              H D
Sbjct: 578 CRIHSD 583


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/616 (33%), Positives = 354/616 (57%), Gaps = 4/616 (0%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           ++S++LID Y+  G + L+ Q+F+ +   + + + T++      G Y + L +  +M  +
Sbjct: 263 VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRK 322

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            +   + +    + + +   D   G+++H   ++LG  S   V   +V  Y KC    + 
Sbjct: 323 HIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKA 382

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
           ++  +  + +DL   W++ +S  VQ G   ++  +F+ M+ EG + D   L +L+ +  E
Sbjct: 383 KEFFLSLEGRDLVV-WSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAE 441

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           + S  LG+++HC  + +D   D+SV T L+SMY++  S   A  LF++M  KD V WN +
Sbjct: 442 ISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTL 501

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+ + + G P+ +LE+ + +  SG + D  T ++ +S+ + + ++  G   H N+++NG 
Sbjct: 502 INGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGI 561

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           + ++ V  +LIDMY +C  L  A  +F   K  K  VSW+ MI GY+ +  + EA+  F+
Sbjct: 562 ESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFN 621

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +MKLE V  + VT + ILPA   +  L      H   +++G  S + +  ++   YAK G
Sbjct: 622 QMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSG 681

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  + + F E  +++K  I+WN+M+S YA HG       L++ M+++ V  D ++++ +
Sbjct: 682 QLSYSEKCFHE--MENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISV 739

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC +AGL++EGR IF+ M E +  EPS EHYA MV+LLG AG  DE   L+  MP +P
Sbjct: 740 LSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEP 799

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           DA+VWG LL ACKMHS  +L E+    L+ +EP NA +Y++LS+IYA  G+W    + R+
Sbjct: 800 DAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRS 859

Query: 665 FLRDRGLKKTPGCSWI 680
            + D GLKK PG SW+
Sbjct: 860 NMTDHGLKKNPGYSWV 875



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 156/585 (26%), Positives = 288/585 (49%), Gaps = 43/585 (7%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C+    L QIHAR I+     Q   L+ N                   SIT+P+ +
Sbjct: 58  LLRSCKYLNPLLQIHARLIV-----QQCTLAPN-------------------SITNPSLI 93

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L+ ++++  S+   +++ +  Y+ M+   + P + T+ FV+++C+  LDF  G  IH  +
Sbjct: 94  LWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDI 153

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEK 216
                +    +G  LV+ Y K  G  +N + +  +   KD+ S WN++IS   Q+    +
Sbjct: 154 ASRELECDVFIGTGLVDMYCKM-GHLDNARKVFDKMPGKDVAS-WNAMISGLSQSSNPCE 211

Query: 217 SFELFKLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           + E+F+ M+M EG E DS +++NL  +   L+ ++  + +H    V   C    V+ +L+
Sbjct: 212 ALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIH--GYVVRRCVFGVVSNSLI 269

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MYSK   ++ A  +FD+M  KD + W  M++ Y   G   E L+LL  M R   + +  
Sbjct: 270 DMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKI 329

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           + + +V + +  +++E GK++H   L+ G    + V   ++ MY +C +L  A++ F S+
Sbjct: 330 SVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSL 389

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + + +V WS+ +   V      EAL +F EM+ EG++ D   + +++ AC  I +    K
Sbjct: 390 EGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGK 449

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H Y +K  + S  SV T +   Y +C     A  LF+  ++  KD++ WN++I+ + K
Sbjct: 450 MMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFN--RMHYKDVVAWNTLINGFTK 507

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-----VNAGLVEEGRIIFKEMKESYGY 570
            GD     +++ +++ S V+PD  T + LL+AC     +  G+   G II        G 
Sbjct: 508 CGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNII------KNGI 561

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           E       +++++  + G +  A  L        D   W  +++ 
Sbjct: 562 ESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAG 606



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 223/451 (49%), Gaps = 11/451 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNSLI    +    +++ + ++ M   G E D  T   +L++         G  +H    
Sbjct: 95  WNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIA 154

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             +   D+ + T L+ MY K+  L++A+ +FDKM  KD   WN MIS   QS  P E+LE
Sbjct: 155 SRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALE 214

Query: 321 LLMCM-VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           +   M +  G   D  + +    ++S +++++  K +H  V+R      VS  NSLIDMY
Sbjct: 215 IFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVS--NSLIDMY 272

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C ++  A +IFD +  K  +SW++M+ GYV H    E L+L  EMK + ++++ ++++
Sbjct: 273 SKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVV 332

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           N + A      LE  K +H Y+++LG+ S   V T I   YAKCG ++ A E F    ++
Sbjct: 333 NSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFF--LSLE 390

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D++ W++ +SA  + G   +   ++ +M+   ++PD      L++AC        G++
Sbjct: 391 GRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKM 450

Query: 560 IF-KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
           +    +K   G + S     ++V++  R      A  L   M +K D   W  L++    
Sbjct: 451 MHCYVIKADMGSDISVA--TTLVSMYTRCKSFMYAMTLFNRMHYK-DVVAWNTLINGFTK 507

Query: 619 HSETELA--ELTAEKLISMEPENAGNYVLLS 647
             +  LA       +L  ++P++     LLS
Sbjct: 508 CGDPRLALEMFLRLQLSGVQPDSGTMVSLLS 538


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/673 (32%), Positives = 368/673 (54%), Gaps = 7/673 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C   + L   +++H   ++  G   +  +++ L+  YA  GLL  S+++F  I  
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVT-GFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVE 145

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +     +     + + ++K+M    + P E +   ++ +C+ L +   G KI
Sbjct: 146 RNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKI 205

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  ++K+G D      +ALV+ Y K  G  E    + Q         WN++I+  V +  
Sbjct: 206 HGLMLKMGLDLDQFSANALVDMYSKA-GEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDC 264

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           ++ +  L   M+  G   +  TL + L++   +   ELGR +H   +  D   DL     
Sbjct: 265 NDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVG 324

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK   ++DA+  +D M  KD + WN +IS Y Q G   +++ L   M       +
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFN 384

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T    + S+++++ I+  KQ+H   +++G      V NSL+D Y +C  ++ A KIF+
Sbjct: 385 QTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFE 444

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
               + +V+++SMI  Y  +    EAL+L+ +M+   ++ D     ++L AC N+ A E 
Sbjct: 445 ERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQ 504

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K LH +++K G       + ++   YAKCG IE A   F E  I ++ I++W++MI  Y
Sbjct: 505 GKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSE--IPNRGIVSWSAMIGGY 562

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +  +L+ QM +  V P+ IT + +L AC +AGLV EG+  F++M+  +G +P+
Sbjct: 563 AQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPT 622

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
           QEHYA M++LLGR+G ++EA ELV  +PF+ D  VWG LL A ++H   EL +  A+ L 
Sbjct: 623 QEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLF 682

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EPE +G +VLL+NIYA+AG W  VAK+R F++D  +KK PG SWIEI   V+ F   D
Sbjct: 683 DLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGD 742

Query: 694 QSHPQADAIYTIL 706
           +SH ++D IY  L
Sbjct: 743 RSHSRSDEIYAKL 755



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/580 (27%), Positives = 300/580 (51%), Gaps = 14/580 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           ++HA ++I  G  ++  L ++L+  Y+       ++++ +  +  + + + ++L    + 
Sbjct: 2   ELHA-HLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G  E+ LLV+ +M L  +   E T+P V+++CS   D   G K+H   V  GF+S   V 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 170 DALVEFYIKCDGGFENEK----GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
           + LV  Y KC G  ++ +    G+++R        WN+L S  VQ+    ++  LFK M 
Sbjct: 121 NTLVVMYAKC-GLLDDSRRLFGGIVERNV----VSWNALFSCYVQSELCGEAVGLFKEMV 175

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G   +  ++  +L +   L+  +LGR +H + +      D     AL+ MYSK   +E
Sbjct: 176 RSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIE 235

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  +F  ++  D V WN +I+          +L LL  M  SG R ++FT  +A+ + +
Sbjct: 236 GAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            M   E G+Q+H+++++  +   +     L+DMY +CE ++ AR+ +DS+  K +++W++
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I GY      L+A+ LFS+M  E ++ +  T+  +L +  ++ A++  K +H  S+K G
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           + S   V  ++  +Y KC  I+ A ++F+E   +  D++ + SMI+AY+++GD  +  KL
Sbjct: 416 IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWE--DLVAYTSMITAYSQYGDGEEALKL 473

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           Y QM+ +D++PD      LL AC N    E+G+ +     + +G+        S+VN+  
Sbjct: 474 YLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK-FGFMCDIFASNSLVNMYA 532

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           + G +++A     ++P +     W  ++     H   + A
Sbjct: 533 KCGSIEDADRAFSEIPNRGIVS-WSAMIGGYAQHGHGKEA 571


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/660 (33%), Positives = 358/660 (54%), Gaps = 4/660 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   ++  G   +++  S L+  YA    L  S  VF+ +   N + +  ++    + 
Sbjct: 202 QVHG-LVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQN 260

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
               + L ++K+M    +  ++  Y  + RSC+ L     G+++H+  +K  F S   VG
Sbjct: 261 DRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVG 320

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            A ++ Y KC G   + + ++    K     +N++I    ++ +  ++ + F+L+   G 
Sbjct: 321 TATLDMYAKC-GRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGL 379

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
            FD  TL   L +   ++    GR VH +AV S    ++ V  A+L MY K  +L +A  
Sbjct: 380 GFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASD 439

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           LFD M  +D V WN +I+A  Q+G  +E+L     M+ S    D FT  + + + +  + 
Sbjct: 440 LFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQA 499

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  G ++H  ++++G  +   V  +L+DMYC+C  +  A KI D  + KT+VSW+++I G
Sbjct: 500 LNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +    QS +A + FS M   GV  D  T   +L  C N+  +   K +H   +K  L S 
Sbjct: 560 FSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSD 619

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             + + +   Y+KCG ++ +  +F  EK  ++D +TWN+M+  YA HG   +  KL+  M
Sbjct: 620 VYICSTLVDMYSKCGNMQDSQLMF--EKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESM 677

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +  +V+P+  TF+ +L AC + GLV++G   F  M   YG +P  EHY+ MV++LGR+G 
Sbjct: 678 QLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGR 737

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           +DEA  LV+ MPF+ DA +W  LLS CK+H   E+AE     L+ ++P+++   VLLSNI
Sbjct: 738 IDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNI 797

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA AG W  V++MR  +R   LKK PGCSWIE+   VH F   D+ HP+ + IY  LG+L
Sbjct: 798 YADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVL 857



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 147/582 (25%), Positives = 290/582 (49%), Gaps = 11/582 (1%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  +++I  YA+ G + ++++ F  +   + + + +++    + GE  K++ V+ +M
Sbjct: 113 RDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEM 172

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
               +     +   V+++C  L +   G ++H  VVK GFD     G AL+  Y KC   
Sbjct: 173 GRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRL 232

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            ++     +   K+  S W+++I+  VQN ++ +  ELFK M+  G         +L RS
Sbjct: 233 DDSLSVFSELPEKNWVS-WSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRS 291

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
              L +L LG+ +H  A+ S F  D+ V TA L MY+K   + DA+ +   M       +
Sbjct: 292 CAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSY 351

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N +I  Y +S    ++L+    ++++G   D  T   A+++ ++++    G+Q+H   ++
Sbjct: 352 NAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVK 411

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           + S   + V N+++DMY +C+ L  A  +FD ++ +  VSW+++I     +    E L  
Sbjct: 412 SISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAH 471

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F+ M    +E D  T  ++L AC    AL     +H   +K G+   S V  A+   Y K
Sbjct: 472 FASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCK 531

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG IE A ++ D  + + K +++WN++IS ++         K +++M +  V PD  T+ 
Sbjct: 532 CGMIEKADKIHD--RTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYA 589

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDM 600
            +L  C N   V  G+ I  ++ +    E   + Y  +++V++  + G+M +++ + +  
Sbjct: 590 AVLDTCANLATVGLGKQIHAQIIKQ---ELQSDVYICSTLVDMYSKCGNMQDSQLMFEKA 646

Query: 601 PFKPDARVWGPLLSACKMH--SETELAELTAEKLISMEPENA 640
           P + D   W  +L     H   E  L    + +L++++P +A
Sbjct: 647 PNR-DFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHA 687



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 198/398 (49%), Gaps = 17/398 (4%)

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           + +D+    +++S Y+    ++ A+  F +M ++D V WN +IS + Q+G  ++S+++ +
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M R G   D  +    + +   ++  + G Q+H  V++ G D  V   ++L+ MY +C+
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L+ +  +F  +  K  VSWS+MI G V +D+++E L LF EM+  GV V      ++  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFR 290

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-- 501
           +C  + AL   K LH +++K    S   V TA    YAKC      G + D +K+ S   
Sbjct: 291 SCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKC------GRMADAQKVLSSMP 344

Query: 502 --DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
              + ++N++I  YA+     Q  K +  + ++ +  D IT  G L AC +     EGR 
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ 404

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +     +S          A ++++ G+   + EA +L  DM  + DA  W  +++AC+ +
Sbjct: 405 VHGLAVKSISMSNICVANA-ILDMYGKCKALAEASDLF-DMMERRDAVSWNAIIAACEQN 462

Query: 620 SETE--LAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
              E  LA   +     MEP+   ++   S + A AG+
Sbjct: 463 GNEEETLAHFASMIHSRMEPD---DFTYGSVLKACAGR 497



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 132/292 (45%), Gaps = 42/292 (14%)

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S   ++  GKQ HA ++  G +    V N L+ MY +C  L+ A K+FD +  + VVS++
Sbjct: 60  SKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYN 119

Query: 405 SMIKGYVT-------------------------------HDQSLEALRLFSEMKLEGVEV 433
           S+I GY +                               + +  +++ +F EM   GV  
Sbjct: 120 SIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGF 179

Query: 434 DFVTIINILPACVNIGALEHVKY---LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           D  ++  +L AC   GALE       +HG  +K G +      +A+   YAKC  ++ + 
Sbjct: 180 DRASLAVVLKAC---GALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSL 236

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +F E  +  K+ ++W++MI+   ++    +  +L+ +M+   V      +  L  +C  
Sbjct: 237 SVFSE--LPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAA 294

Query: 551 AGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
              +  G+ +    +K ++G +       + +++  + G M +A++++  MP
Sbjct: 295 LSALRLGKELHSHALKSAFGSDIIVG--TATLDMYAKCGRMADAQKVLSSMP 344



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T  +I   C    +L   K  H   +  G    + V+  +   Y KC  ++ A ++FD  
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFD-- 108

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K+  +D++++NS+IS YA  G+     K + +M + DV    +++  +++  +  G   +
Sbjct: 109 KMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDV----VSWNSVISGFLQNGECRK 164

Query: 557 GRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDE 592
              +F EM +   G++      AS+  +L   G ++E
Sbjct: 165 SIDVFLEMGRCGVGFD-----RASLAVVLKACGALEE 196


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/648 (34%), Positives = 364/648 (56%), Gaps = 8/648 (1%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  GL  ++ + + LI  Y   G +  + +VF+ +   N + + +I+   S+ G  +  
Sbjct: 57  VIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDC 116

Query: 116 --LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
             +LV      + + P   T   V+  C+  +D   G +IH   VKLG      V ++LV
Sbjct: 117 FDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLV 176

Query: 174 EFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM-EGAEF 231
           + Y KC  G+  E  M+  +  +     WN++I      G   ++F LF+ M+M E  E 
Sbjct: 177 DMYSKC--GYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEV 234

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           +  T++N+L + +E+  L   + +H  ++   F  D  V    ++ Y+K   L  A+ +F
Sbjct: 235 NEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVF 294

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
             M  K    WN +I    Q+G P+++L L + M  SG   D FT  + + + + +K++ 
Sbjct: 295 YSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLR 354

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +GK++H  VLR+G +    +  SL+ +Y  C + + AR +FD ++ K+ VSW++MI GY 
Sbjct: 355 YGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYS 414

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    +AL LF ++  +G +   + ++++L AC    AL   K  H Y++K  L     
Sbjct: 415 QNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVF 474

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  +    YAK GCI+ +  +FD  K  +KD+ +WN++I+AY  HGD  +  +L+ +M++
Sbjct: 475 VACSTIDMYAKSGCIKESRSVFDGLK--NKDLASWNAIIAAYGVHGDGEESIELFERMRK 532

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
               PD  TF+G+LT C +AGLVEEG   F EM+  +G EP  EHYA ++++LGRAG +D
Sbjct: 533 VGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLD 592

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           +A  LV +MP +PD+RVW  LLS C+   E E+ ++ AEKL+ +EP+N  NYV LSN+YA
Sbjct: 593 DALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYA 652

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
            +G+W+ V ++R  ++D GL+K  GCSWIE+G  VH F A D   PQ+
Sbjct: 653 GSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQS 700



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/526 (28%), Positives = 265/526 (50%), Gaps = 29/526 (5%)

Query: 112 YEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDV 168
           Y   + ++ ++   + + A++ T+P VI++C+  LD   GE IH  V+K+G   D F  V
Sbjct: 11  YSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVF--V 68

Query: 169 GDALVEFYIKCDGGFENE--KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           G+AL+  Y K   GF +   K       ++L S WNS+IS   +NG S+  F++   M  
Sbjct: 69  GNALIAMYGKF--GFVDAAVKVFHYMPVRNLVS-WNSIISGFSENGFSKDCFDMLVEMMA 125

Query: 227 --EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
             EG   D  TL+ +L        +++G  +H +AV     +D+ VN +L+ MYSK   L
Sbjct: 126 GEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYL 185

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAAVSS 343
            +A+MLFDK + K+ V WN MI      G+  E+  L   M ++     +  T +  + +
Sbjct: 186 TEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPA 245

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
              +  +   K++H   +R+G  Y   V N  +  Y +C  L CA ++F S++TKTV SW
Sbjct: 246 CLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSW 305

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I G   +    +AL L+ +M   G+  D+ TI ++L A  ++ +L + K +HG+ ++
Sbjct: 306 NALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLR 365

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL   S +  ++   Y  CG    A  LFD   ++ K  ++WN+MIS Y+++G      
Sbjct: 366 HGLEIDSFIGISLLSLYIHCGESSSARLLFD--GMEEKSSVSWNAMISGYSQNGLPEDAL 423

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYA- 578
            L+ ++     +P  I  + +L AC     +  G       KE++ Y       ++ +  
Sbjct: 424 ILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG-------KETHCYALKALLMEDVFVA 476

Query: 579 -SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
            S +++  ++G + E+R +   +  K D   W  +++A  +H + E
Sbjct: 477 CSTIDMYAKSGCIKESRSVFDGLKNK-DLASWNAIIAAYGVHGDGE 521



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 197/387 (50%), Gaps = 7/387 (1%)

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LG ++H + +      D+ V  AL++MY K   ++ A  +F  M  ++ V WN +IS + 
Sbjct: 49  LGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFS 108

Query: 311 QSGFPKESLELLMCMV--RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           ++GF K+  ++L+ M+    G   D+ T +  +   +   +++ G ++H   ++ G    
Sbjct: 109 ENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSED 168

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           V V+NSL+DMY +C  L  A+ +FD    K  VSW++MI G  T     EA  LF EM++
Sbjct: 169 VRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQM 228

Query: 429 -EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            E +EV+ VT++NILPAC+ I  L  +K LHGYS++ G      V      +YAKCG + 
Sbjct: 229 QEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLI 288

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  +F    +++K + +WN++I   A++GD  +   LY QM  S + PD  T   LL A
Sbjct: 289 CAERVF--YSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLA 346

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
             +   +  G+ +   +   +G E       S+++L    G    AR L   M  K    
Sbjct: 347 SAHLKSLRYGKEVHGFVLR-HGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS 405

Query: 608 VWGPLLSACKMHSETELAELTAEKLIS 634
            W  ++S    +   E A +   KL+S
Sbjct: 406 -WNAMISGYSQNGLPEDALILFRKLVS 431



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 196/391 (50%), Gaps = 15/391 (3%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           + L+++H  Y I HG   + ++++  + +YA  G+L  +++VF S+ +     +  ++  
Sbjct: 253 RSLKELHG-YSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG 311

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++ G+  K L +Y QM    + P   T   ++ + + L     G+++H  V++ G +  
Sbjct: 312 CAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEID 371

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             +G +L+  YI C      E    +  F  ++ +    WN++IS   QNG  E +  LF
Sbjct: 372 SFIGISLLSLYIHC-----GESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILF 426

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + +  +G +     ++++L +  +  +L LG+  HC A+ +   +D+ V  + + MY+K 
Sbjct: 427 RKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKS 486

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +++++ +FD + +KD   WN +I+AY   G  +ES+EL   M + G   D FT I  +
Sbjct: 487 GCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGIL 546

Query: 342 SSISTMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCA-RKIFDSVKTK 398
           +  S    +E G + + N ++N  G + ++  +  ++DM      L+ A R + +  +  
Sbjct: 547 TVCSHAGLVEEGLK-YFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQP 605

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
               WSS++  +  +   LE  ++ +E  LE
Sbjct: 606 DSRVWSSLLS-FCRNFGELEIGQIVAEKLLE 635


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/625 (34%), Positives = 344/625 (55%), Gaps = 75/625 (12%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  VF +I  PN L++ T+++  +   +   +L +Y  M    + P   T+PF+++S
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+    F  G++IH QV+KLG   FD      ++ Y+                       
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLG---FD------LDLYVH---------------------- 102

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
             SLIS+ VQN + E ++++F                               R  H    
Sbjct: 103 -TSLISMYVQNWRLEDAYKVFD------------------------------RSSH---- 127

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                +D+   TAL++ Y+    +  A+ LFD++  KD V WN MIS Y ++G  KE+LE
Sbjct: 128 -----RDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALE 182

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M++   R D  T +  +S+ +   +IE G+Q+H+ V  +G D  + + N+LID+Y 
Sbjct: 183 LFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYS 242

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C ++  A  +F  +  K V+SW+++I GY   +   EAL LF EM   G   + VT+++
Sbjct: 243 KCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 302

Query: 441 ILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           +LPAC ++GA++  +++H Y  K   G+ + SS+ T++   YAKCG IE A ++F+   +
Sbjct: 303 VLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN--SM 360

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             K + +WN+MI  +A HG     F L+++M++  + PD ITF+GLL+AC ++G+++ GR
Sbjct: 361 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            IF+ M + Y   P  EHY  M++LLG +G   EA E++  M  +PD  +W  LL ACKM
Sbjct: 421 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 480

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H   ELAE  A+ LI +EPEN  +Y+LLSNIYA+AG+W  VA++R  L  + +KK PGCS
Sbjct: 481 HGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCS 540

Query: 679 WIEIGKLVHEFWAADQSHPQADAIY 703
            IE+  +V EF   D+ HPQ   IY
Sbjct: 541 SIEVDSVVFEFVVGDKFHPQNREIY 565



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 149/313 (47%), Gaps = 45/313 (14%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           + L  A  +F++++    + W++MI+G+      + +L L+  M   G+  +  T   +L
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLL 71

Query: 443 PACVNIGALEHVKYLHGYSMKLGLN-------SLSSV----------------------- 472
            +C         + +HG  +KLG +       SL S+                       
Sbjct: 72  KSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVV 131

Query: 473 -NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
             TA+   YA  G I  A +LFDE  I  KD+++WN+MIS YA+ G + +  +L+ +M +
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDE--IPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            +VRPD  T++ +L+AC ++G +E GR +   + + +G++ + +   ++++L  + G ++
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWV-DDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 592 EARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            A  L + + +K D   W  L+     M+   E   L  E L S E  N  +  +LS + 
Sbjct: 249 TACGLFQGLSYK-DVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN--DVTMLSVLP 305

Query: 651 AAA-------GKW 656
           A A       G+W
Sbjct: 306 ACAHLGAIDIGRW 318


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 347/600 (57%), Gaps = 7/600 (1%)

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           + L+ T+++  S  G     L VY QM    + P + T+PFV+++C+   +   G ++H 
Sbjct: 7   AFLWNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHG 65

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG-KS 214
            VVKLGF+S   VG+ L+ FY  C G  +  +   +   KDL S WN++I +   NG   
Sbjct: 66  SVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVS-WNTMIGVFSVNGWHY 124

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
             + ++F+LM  EG + +S T+ + L   VEL+  + GR VH  ++      D+ +  +L
Sbjct: 125 RDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSL 184

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY+K     +A  +F K+  K+ V WN MI+ + Q+ F   ++ L+  M   G   + 
Sbjct: 185 IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNS 244

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T    + + + M  +  GK++HA  +  G  + + V N+L DMY +   L  AR +FD+
Sbjct: 245 VTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDT 304

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
              +  VS++ +I G+       E+L LFSEM+L G++ D V+ +  L AC N+ A++  
Sbjct: 305 -SLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQG 363

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K +HG+ ++   +    V  ++   Y KCG I +A  +FD  ++ +KD+ +WN+MI  Y 
Sbjct: 364 KEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFD--RMTNKDVASWNTMILGYG 421

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
             G+      L+  M++ DV  D ++F+ +L+AC + GL+E+GR  F E+K + G EP+Q
Sbjct: 422 MLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELK-ARGIEPTQ 480

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
            HYA MV+LLGRAG M+EA EL+K +P  PDA +WG LL AC+++   ELA   AE L  
Sbjct: 481 MHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFE 540

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++PE++G Y LLSN+YA  G+W+   ++R  ++ RG+KK+PGCSW++IG+  H F   ++
Sbjct: 541 LKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEK 600



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 223/471 (47%), Gaps = 5/471 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H   + L G   ++ + + L+  Y N G L  + +VF+ +   + + + T++   S 
Sbjct: 61  REVHGSVVKL-GFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSV 119

Query: 109 FG-EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
            G  Y   L +++ M  + + P   T    +     L  F +G ++H   +++G +S   
Sbjct: 120 NGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIF 179

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           + ++L++ Y K     E      +   K++ S WN++I+   QN     +  L + M+  
Sbjct: 180 IANSLIDMYAKSGHSTEASNVFYKLDAKNVVS-WNAMIANFAQNRFELVAVGLVRQMQDY 238

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   +S T  N+L +   +  +  G+ +H  ++      DL V+ AL  MY+K   L+ A
Sbjct: 239 GELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLA 298

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD  S +D V +NI+I  + Q+    ESL L   M   G + D  + + A+S+ + +
Sbjct: 299 RNVFDT-SLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANL 357

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             I+ GK++H  +LR      + V NSL+D Y +C  +  AR IFD +  K V SW++MI
Sbjct: 358 TAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMI 417

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY    +   A+ LF  M+ + VE D V+ I +L AC + G LE  +         G+ 
Sbjct: 418 LGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIE 477

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                   +     + G +E A EL     I   D   W +++ A   +G+
Sbjct: 478 PTQMHYACMVDLLGRAGLMEEAAELIKGLPI-VPDANIWGALLGACRIYGN 527


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 360/674 (53%), Gaps = 9/674 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   +  Q    IH + +   G      + + LI  Y       L+ +VF  +  
Sbjct: 148 SILSACTKTELFQLGRLIHVQ-VYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLY 206

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +S+ + T++   ++ G  ++ L ++ +M L  + P   T   ++ +CS + D   G+++
Sbjct: 207 CDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQL 266

Query: 154 HAQVVKLGFDSFDDVGD-ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           H+ ++K G  S D + + +L++ Y+K  G  E    +     +     WN ++    Q  
Sbjct: 267 HSYLLKAGM-SLDYIMEGSLLDLYVK-SGDIEEALQIFDSGDRTNVVLWNLMLVAYGQID 324

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              KSF++F  M   G   +  T   +LR+      + LG  +H + + + F  D+ V+ 
Sbjct: 325 DLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSG 384

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MYSK   L+ A+ + D + +KD V W  MI+ Y Q  F KE+LE    M   G   
Sbjct: 385 VLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWP 444

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D     +A+S+ + +K +  G Q+HA V  +G    VS+ N L+ +Y  C     A   F
Sbjct: 445 DNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSF 504

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           ++++ K  ++W+ +I G+       EAL++F +M   G + +  T ++ + A  N+  ++
Sbjct: 505 EAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIK 564

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +H   +K G  S + ++ A+   Y KCG IE A   F E  +  ++ ++WN++I+ 
Sbjct: 565 QGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFE--MTKRNEVSWNTIITC 622

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            ++HG   +   L+ QMKQ  ++P  +TF+G+LTAC + GLVEEG   FK M   +G  P
Sbjct: 623 CSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHP 682

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             +HYA +V++LGRAG +D A+  V++MP   D+ VW  LLSACK+H   E+ E  A+ L
Sbjct: 683 RPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHL 742

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + +EP ++ +YVLLSN YA  GKW    ++R  ++DRG++K PG SWIE+  +VH F+  
Sbjct: 743 LELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVG 802

Query: 693 DQSHPQADAIYTIL 706
           D+ HP AD IY  L
Sbjct: 803 DRLHPLADQIYNFL 816



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/578 (28%), Positives = 297/578 (51%), Gaps = 14/578 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + +IHA+ II  GL    I+ + LID YA  G +  +++VF  ++  +++ +  +L   +
Sbjct: 61  VPEIHAKAIIC-GLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYA 119

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G  E+ + +Y++M    + P       ++ +C+    F  G  IH QV K GF S   
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDL----KSRWNSLISLAVQNGKSEKSFELFKL 223
           VG+AL+  Y++C         +  R F D+       +N+LIS   Q G  +++  +F  
Sbjct: 180 VGNALISLYLRC-----RSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDE 234

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M++ G   DS T+ +LL +   +  L  G+ +H   + +    D  +  +LL +Y K   
Sbjct: 235 MQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGD 294

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E+A  +FD     + V+WN+M+ AY Q     +S ++   M+ +G R + FT    + +
Sbjct: 295 IEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRT 354

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +    I  G+Q+H+  ++NG    + V   LIDMY +   L+ A++I D ++ K VVSW
Sbjct: 355 CTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSW 414

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +SMI GYV H+   EAL  F EM+  G+  D + + + + AC  I A+     +H     
Sbjct: 415 TSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYV 474

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G ++  S+   +   YA+CG  + A   F  E I+ K+ ITWN +IS +A+ G + +  
Sbjct: 475 SGYSADVSIWNGLVYLYARCGISKEAFSSF--EAIEHKEGITWNGLISGFAQSGLYEEAL 532

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           K++ +M Q+  + ++ TF+  ++A  N   +++G+ I   + ++ GY    E   ++++L
Sbjct: 533 KVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT-GYTSETEISNALISL 591

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            G+ G +++A+    +M  K +   W  +++ C  H  
Sbjct: 592 YGKCGSIEDAKMDFFEMT-KRNEVSWNTIITCCSQHGR 628



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 251/556 (45%), Gaps = 35/556 (6%)

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK------IHAQVVKLGFDSFD 166
           EK L ++     Q M      +   +R+C       SG +      IHA+ +  G   + 
Sbjct: 23  EKLLPLFAAKCRQYMVLGAVDFACALRACRG-----SGRRWPLVPEIHAKAIICGLSGYR 77

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRK---FKDLKSR----WNSLISLAVQNGKSEKSFE 219
            +G+ L++ Y K        KG ++R    F++L  R    W +++S   QNG  E++  
Sbjct: 78  IIGNLLIDLYAK--------KGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVR 129

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           L++ M   G       L ++L +  + +  +LGR++H       F  +  V  AL+S+Y 
Sbjct: 130 LYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYL 189

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           +  S   A  +F  M   D V +N +IS + Q G    +L +   M  SG   D  T  +
Sbjct: 190 RCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIAS 249

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            +++ S + ++  GKQ+H+ +L+ G      +  SL+D+Y +  D+  A +IFDS     
Sbjct: 250 LLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTN 309

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           VV W+ M+  Y   D   ++  +F  M   GV  +  T   +L  C + G +   + +H 
Sbjct: 310 VVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHS 369

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
            ++K G  S   V+  +   Y+K G ++ A  + D   I+ KD+++W SMI+ Y +H   
Sbjct: 370 LTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILD--MIEEKDVVSWTSMIAGYVQHEFC 427

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +  + + +M+   + PD I     ++AC     V +G  I   +  S GY      +  
Sbjct: 428 KEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS-GYSADVSIWNG 486

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           +V L  R G   EA    + +  K +   W  L+S     +++ L E   +  + M+   
Sbjct: 487 LVYLYARCGISKEAFSSFEAIEHK-EGITWNGLISG---FAQSGLYEEALKVFMKMDQAG 542

Query: 640 A--GNYVLLSNIYAAA 653
           A    +  +S+I A+A
Sbjct: 543 AKYNVFTFVSSISASA 558



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-LEHVKY 456
           +   S++  + G++  D   + L LF+    + + +  V     L AC   G     V  
Sbjct: 4   RGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPE 63

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +H  ++  GL+    +   +   YAK G +  A  +F+E  +  +D ++W +++S YA++
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSV--RDNVSWVAVLSGYAQN 121

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           G   +  +LY +M +S V P       +L+AC    L + GR+I
Sbjct: 122 GLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLI 165


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/678 (31%), Positives = 378/678 (55%), Gaps = 5/678 (0%)

Query: 49   QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
            + +H   +   GL + +L  ++ L++ Y  +G    + +VF+ +   N + + T+++  +
Sbjct: 448  RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHA 507

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
              GE+E+   +++++  +     +     V++    +        +HA   KLG D    
Sbjct: 508  LRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAF 567

Query: 168  VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            VG AL++ Y  C G   + + +           W +++S   +N   E + ++F  MR+ 
Sbjct: 568  VGSALIDAYSMC-GVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVA 626

Query: 228  GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
             ++ +   L ++LR+ V L S+ LG+ +H  +V + +  +  V  ALL MY+K  ++EDA
Sbjct: 627  VSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA 686

Query: 288  KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            ++ F+ +++ D ++W++MIS Y Q    +++ EL + M+RS    + F+  + + + + M
Sbjct: 687  RLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANM 746

Query: 348  KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
              ++ GKQ+H + ++ G + ++ V N+LID+Y +C D+  + +IF S++    VSW+++I
Sbjct: 747  PLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTII 806

Query: 408  KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
             GY        AL +F EM+   V    VT  ++L AC +  ++ HV  +H    K   N
Sbjct: 807  VGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFN 866

Query: 468  SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
            S + V+ ++  SYAKCGCI  A E+F  E +   D+++WN++IS YA HG  +   +L+ 
Sbjct: 867  SDTIVSNSLIDSYAKCGCIRDAREIF--ETLKECDLVSWNAIISGYAVHGQAAMAQELFD 924

Query: 528  QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
             M ++ ++ + ITF+ LL+ C + GLV +G  +F  M+  +G EPS EHY  +V LLGRA
Sbjct: 925  MMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRA 984

Query: 588  GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
            G +++A   + D+P  P A VW  LLS+C +H   EL   +AEK++ +EP++   YVLLS
Sbjct: 985  GRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLS 1044

Query: 648  NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
            N+Y+AAG  + VA  R  +R+ G++K PG SW+EI   VH F    + HP    I  +L 
Sbjct: 1045 NMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLE 1104

Query: 708  ILELE-IMEGRRESSEEL 724
             L L+ I EG    ++E+
Sbjct: 1105 WLNLKAIREGYVPDTDEV 1122


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/637 (33%), Positives = 359/637 (56%), Gaps = 18/637 (2%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           GL+  +  +F  +   ++ ++  I++  +  G +++ +  Y +M  + +     T+PFVI
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVI 131

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           ++C  LL  + G+K+H +++K+GFD    V + L++ Y+K       EK   +   +DL 
Sbjct: 132 KACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLV 191

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           S WNS++S    +G    S   FK M   G + D   +I+ L +      L  G  +HC 
Sbjct: 192 S-WNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQ 250

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            + S+   D+ V T+L+ MY K   ++ A+ +F+++  K+ V WN MI      G  +E 
Sbjct: 251 VIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMI------GGMQED 304

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
            +++          D+ T I  + S S    +  GK +H   +R      + +  +L+DM
Sbjct: 305 DKVI---------PDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDM 355

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C +L  A  +F+ +  K +VSW++M+  YV ++Q  EAL++F  +  E ++ D +TI
Sbjct: 356 YGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITI 415

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            ++LPA   + +    K +H Y MKLGL S + ++ AI   YAKCG ++ A E FD   +
Sbjct: 416 ASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFD--GM 473

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KD+++WN+MI AYA HG      + +++M+    +P+  TF+ LLTAC  +GL++EG 
Sbjct: 474 VCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGW 533

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  MK  YG +P  EHY  M++LLGR G++DEA+  +++MP  P AR+WG LL+A + 
Sbjct: 534 GFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRN 593

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H++  LAEL A  ++S++ +N G YVLLSN+YA AG+W  V +++  ++++GL KT GCS
Sbjct: 594 HNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCS 653

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            ++I      F   D+SH   + IY +L IL  +I E
Sbjct: 654 MVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIGE 690



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 235/473 (49%), Gaps = 23/473 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++H + I + G   ++ + + LID Y  +G + L+++VF+ +   + + + +++     
Sbjct: 144 QKVHGKLIKI-GFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQI 202

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            G+   +L+ +K+M    +    D +  +  + +CS      SG +IH QV++   +   
Sbjct: 203 DGDGLSSLMCFKEML--RLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDI 260

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V  +L++ Y KC G  +  + +  R +      WN++I    ++ K             
Sbjct: 261 MVQTSLIDMYGKC-GKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIP---------- 309

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
                D  T+INLL S  +  +L  G+ +H  A+   F   L + TAL+ MY K   L+ 
Sbjct: 310 -----DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKL 364

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +F++M++K+ V WN M++AY Q+   KE+L++   ++    + D  T  + + +++ 
Sbjct: 365 AEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAE 424

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           + +   GKQ+H+ +++ G      + N+++ MY +C DL  AR+ FD +  K VVSW++M
Sbjct: 425 LASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTM 484

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLG 465
           I  Y  H     +++ FSEM+ +G + +  T +++L AC   G + E   + +   ++ G
Sbjct: 485 IMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYG 544

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           ++        +     + G ++ A + F EE         W S+++A   H D
Sbjct: 545 IDPGIEHYGCMLDLLGRNGNLDEA-KCFIEEMPLVPTARIWGSLLAASRNHND 596


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/676 (30%), Positives = 363/676 (53%), Gaps = 7/676 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   +   Q   IHA+    HG    + + + +I  Y   G   L+++VF  +  
Sbjct: 148 SVLSSCTKAELFAQGRLIHAQGY-KHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPH 206

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +++ + T++   ++ G  E  L ++++M    + P   T   ++ +C+ L D   G ++
Sbjct: 207 RDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQL 266

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H+ + K G  S   +  +L++ Y+KC G  E    +     +     WN ++    Q   
Sbjct: 267 HSYLFKAGISSDYIMEGSLLDLYVKC-GDVETALVIFNSSDRTNVVLWNLMLVAFGQIND 325

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             KSFELF  M+  G   +  T   +LR+    + ++LG  +H ++V + F  D+ V+  
Sbjct: 326 LAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGV 385

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK   LE A+ + + + +KD V W  MI+ Y Q    K++L     M + G   D
Sbjct: 386 LIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPD 445

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
                +A+S  + +  +  G Q+HA +  +G    VS+ N+L+++Y  C  +  A   F+
Sbjct: 446 NIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            ++ K  ++ + ++ G+       EAL++F  M   GV+ +  T ++ L A  N+  ++ 
Sbjct: 506 EMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQ 565

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H   +K G +  + V  A+   Y KCG  E A   F E  +  ++ ++WN++I++ 
Sbjct: 566 GKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE--MSERNEVSWNTIITSC 623

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           ++HG   +   L+ QMK+  ++P+ +TF+G+L AC + GLVEEG   FK M + YG  P 
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPR 683

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYA ++++ GRAG +D A++ +++MP   DA VW  LLSACK+H   E+ E  A+ L+
Sbjct: 684 PDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLL 743

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP ++ +YVLLSN YA   KW    ++R  +RDRG++K PG SWIE+  +VH F+  D
Sbjct: 744 ELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGD 803

Query: 694 QSHPQADAIYTILGIL 709
           + HP A+ IY  L ++
Sbjct: 804 RLHPLAEQIYNFLAVI 819



 Score =  252 bits (643), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 167/580 (28%), Positives = 301/580 (51%), Gaps = 14/580 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q + +IHA+  +  GL +  I+ + LID Y+  GL+  +++VF  +++ +++ +  +L  
Sbjct: 59  QVVPEIHAK-AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++ G  E+ L +Y+QM    + P       V+ SC+    F  G  IHAQ  K GF S 
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             VG+A++  Y++C G F     + +R F D+  R    +N+LIS   Q G  E + E+F
Sbjct: 178 IFVGNAVITLYLRC-GSFR----LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIF 232

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M+  G   D  T+ +LL +   L  L+ G  +H     +    D  +  +LL +Y K 
Sbjct: 233 EEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKC 292

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +E A ++F+     + V+WN+M+ A+ Q     +S EL   M  +G R + FT    +
Sbjct: 293 GDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCIL 352

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + +  + I+ G+Q+H+  ++ G +  + V   LIDMY +   L  AR++ + +K K VV
Sbjct: 353 RTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV 412

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+SMI GYV H+   +AL  F EM+  G+  D + + + +  C  I A+     +H   
Sbjct: 413 SWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI 472

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
              G +   S+  A+   YA+CG I  A   F+E  ++ KD IT N ++S +A+ G   +
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE--MELKDGITGNGLVSGFAQSGLHEE 530

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             K++ +M QS V+ ++ TF+  L+A  N   +++G+ I   + ++ G+    E   +++
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALI 589

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +L G+ G  ++A+    +M  + +   W  ++++C  H  
Sbjct: 590 SLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGR 628


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/659 (32%), Positives = 361/659 (54%), Gaps = 7/659 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNLSK 108
           Q+HA  +   G   ++ +++ L+  Y   G +  +++VFN   S  N++ +  ++    K
Sbjct: 121 QVHAMAMAT-GFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             +    + V+ +M    + P E  +  V+ +C+   +  +G ++HA VV++G+D     
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV+ Y+K   G  +   +I  K  D     WN+LIS  V NG   ++ EL   M+  
Sbjct: 240 ANALVDMYMKM--GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   +  TL ++L++     + +LGR +H   + ++   D  +   L+ MY+K   L+DA
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD M  +D ++ N +IS     G   E+L L   + + G   +  T  A + S +++
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           +     +Q+HA  ++ G  +   V N LID Y +C  L+ A ++F+   +  +++ +SMI
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMI 477

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
                 D    A++LF EM  +G+E D   + ++L AC ++ A E  K +H + +K    
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S +    A+  +YAKCG IE A   F    +  + +++W++MI   A+HG   +  +L+ 
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAF--SSLPERGVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M    + P+ IT   +L AC +AGLV+E +  F  MKE +G + ++EHY+ M++LLGRA
Sbjct: 596 RMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRA 655

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G +D+A ELV  MPF+ +A +WG LL A ++H + EL +L AEKL  +EPE +G +VLL+
Sbjct: 656 GKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLA 715

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           N YA+AG WN VAK+R  ++D  +KK P  SWIE+   VH F   D+SHP    IY  L
Sbjct: 716 NTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/539 (27%), Positives = 259/539 (48%), Gaps = 36/539 (6%)

Query: 46  QHLQQIHARYIILHG--LHQNLILS-------SNLIDSYANLGLLSLSQQVFNSITSPNS 96
           Q L +  A   +L G  LH +L+ S       ++LI  Y+       +++ F+ I  P  
Sbjct: 9   QQLTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCH 68

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + + +++   S  G     +  +  M  + +   E   P V++   C+ D   G ++HA 
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK---CVPDARLGAQVHAM 125

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR-----WNSLISLA 208
            +  GF S   V +ALV  Y    GGF    G +   +R F +  S      WN L+S  
Sbjct: 126 AMATGFGSDVFVANALVAMY----GGF----GFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 209 VQNGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           V+N +   + ++F  M   G    EF    ++N    +   +++E GR VH + V   + 
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS---RNIEAGRQVHAMVVRMGYD 234

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           KD+    AL+ MY K+  ++ A ++F+KM D D V WN +IS    +G    ++ELL+ M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
             SG   ++FT  + + + S     + G+Q+H  +++  +D    +   L+DMY +   L
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           + ARK+FD +  + ++  +++I G     +  EAL LF E++ EG+ V+  T+  +L + 
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            ++ A    + +H  ++K+G    + V   +  SY KC C+  A  +F+E    S DII 
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE--CSSGDIIA 472

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
             SMI+A ++        KL+ +M +  + PD      LL AC +    E+G+ +   +
Sbjct: 473 CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 175/354 (49%), Gaps = 18/354 (5%)

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           S    L+S YSK      A+  FD++ D   V W+ +++AY  +G P+ +++    M   
Sbjct: 38  SFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   + F A+  V  +  + +   G Q+HA  +  G    V V N+L+ MY     ++ A
Sbjct: 98  GVCCNEF-ALPVV--LKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 154

Query: 389 RKIFDSVKT-KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV---EVDFVTIINILPA 444
           R++F+   + +  VSW+ ++  YV +DQ  +A+++F EM   G+   E  F  ++N   A
Sbjct: 155 RRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN---A 211

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C     +E  + +H   +++G +       A+   Y K G +++A  +F  EK+   D++
Sbjct: 212 CTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIF--EKMPDSDVV 269

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WN++IS    +G   +  +L  QMK S + P++ T   +L AC  AG  + GR I   M
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFM 329

Query: 565 KESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
            ++       + Y    +V++  +   +D+AR+ V D  F  D  +   L+S C
Sbjct: 330 IKA---NADSDDYIGVGLVDMYAKNHFLDDARK-VFDWMFHRDLILCNALISGC 379



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 148/342 (43%), Gaps = 41/342 (11%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G  +HA++L++GS    S  N LI  Y +C    CAR+ FD +     VSWSS++  Y  
Sbjct: 23  GAHLHASLLKSGS--LASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 413 HDQSLEALRLFSEMKLEGV---EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +     A++ F  M+ EGV   E     ++  +P    +GA      +H  +M  G  S 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD-ARLGA-----QVHAMAMATGFGSD 134

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   Y   G ++ A  +F+E     ++ ++WN ++SAY K+       +++ +M
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFNEAD-SERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
             S ++P    F  ++ AC  +  +E GR +   M    GY+       ++V++  + G 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQV-HAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKM--HSETELAELTAEKLISMEPENAGNYVLLS 647
           +D A  + + MP   D   W  L+S C +  H    +  L   K   + P    N   LS
Sbjct: 253 VDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP----NVFTLS 307

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           +I                     LK   G    ++G+ +H F
Sbjct: 308 SI---------------------LKACSGAGAFDLGRQIHGF 328


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/659 (32%), Positives = 361/659 (54%), Gaps = 7/659 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNLSK 108
           Q+HA  +   G   ++ +++ L+  Y   G +  +++VFN   S  N++ +  ++    K
Sbjct: 121 QVHAMAMAT-GFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             +    + V+ +M    + P E  +  V+ +C+   +  +G ++HA VV++G+D     
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV+ Y+K   G  +   +I  K  D     WN+LIS  V NG   ++ EL   M+  
Sbjct: 240 ANALVDMYMKM--GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYS 297

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   +  TL ++L++     + +LGR +H   + ++   D  +   L+ MY+K   L+DA
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD M  +D ++ N +IS     G   E+L L   + + G   +  T  A + S +++
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           +     +Q+HA  ++ G  +   V N LID Y +C  L+ A ++F+   +  +++ +SMI
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMI 477

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
                 D    A++LF EM  +G+E D   + ++L AC ++ A E  K +H + +K    
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S +    A+  +YAKCG IE A   F    +  + +++W++MI   A+HG   +  +L+ 
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAF--SSLPERGVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M    + P+ IT   +L AC +AGLV+E +  F  MKE +G + ++EHY+ M++LLGRA
Sbjct: 596 RMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRA 655

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G +D+A ELV  MPF+ +A +WG LL A ++H + EL +L AEKL  +EPE +G +VLL+
Sbjct: 656 GKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLA 715

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           N YA+AG WN VAK+R  ++D  +KK P  SWIE+   VH F   D+SHP    IY  L
Sbjct: 716 NTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 147/539 (27%), Positives = 260/539 (48%), Gaps = 36/539 (6%)

Query: 46  QHLQQIHARYIILHG--LHQNLILS-------SNLIDSYANLGLLSLSQQVFNSITSPNS 96
           Q L +  A   +L G  LH +L+ S       ++LI  Y+       +++VF+ I  P  
Sbjct: 9   QQLTRYAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCH 68

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + + +++   S  G     +  +  M  + +   E   P V++   C+ D   G ++HA 
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK---CVPDARLGAQVHAM 125

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR-----WNSLISLA 208
            +  GF S   V +ALV  Y    GGF    G +   +R F +  S      WN L+S  
Sbjct: 126 AMATGFGSDVFVANALVAMY----GGF----GFMDDARRVFNEADSERNAVSWNGLMSAY 177

Query: 209 VQNGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           V+N +   + ++F  M   G    EF    ++N    +   +++E GR VH + V   + 
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS---RNIEAGRQVHAMVVRMGYD 234

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           KD+    AL+ MY K+  ++ A ++F+KM D D V WN +IS    +G    ++ELL+ M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
             SG   ++FT  + + + S     + G+Q+H  +++  +D    +   L+DMY +   L
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           + ARK+FD +  + ++  +++I G     +  EAL LF E++ EG+ V+  T+  +L + 
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            ++ A    + +H  ++K+G    + V   +  SY KC C+  A  +F+E    S DII 
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE--CSSGDIIA 472

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
             SMI+A ++        KL+ +M +  + PD      LL AC +    E+G+ +   +
Sbjct: 473 CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 176/354 (49%), Gaps = 18/354 (5%)

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           S    L+S YSK      A+ +FD++ D   V W+ +++AY  +G P+ +++    M   
Sbjct: 38  SFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   + F A+  V  +  + +   G Q+HA  +  G    V V N+L+ MY     ++ A
Sbjct: 98  GVCCNEF-ALPVV--LKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 154

Query: 389 RKIFDSVKT-KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV---EVDFVTIINILPA 444
           R++F+   + +  VSW+ ++  YV +DQ  +A+++F EM   G+   E  F  ++N   A
Sbjct: 155 RRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN---A 211

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C     +E  + +H   +++G +       A+   Y K G +++A  +F  EK+   D++
Sbjct: 212 CTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIF--EKMPDSDVV 269

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WN++IS    +G   +  +L  QMK S + P++ T   +L AC  AG  + GR I   M
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFM 329

Query: 565 KESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
            ++       + Y    +V++  +   +D+AR+ V D  F  D  +   L+S C
Sbjct: 330 IKA---NADSDDYIGVGLVDMYAKNHFLDDARK-VFDWMFHRDLILCNALISGC 379



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 41/342 (11%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G  +HA++L++GS    S  N LI  Y +C    CAR++FD +     VSWSS++  Y  
Sbjct: 23  GAHLHASLLKSGS--LASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 413 HDQSLEALRLFSEMKLEGV---EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +     A++ F  M+ EGV   E     ++  +P    +GA      +H  +M  G  S 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD-ARLGA-----QVHAMAMATGFGSD 134

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   Y   G ++ A  +F+E     ++ ++WN ++SAY K+       +++ +M
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFNEAD-SERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
             S ++P    F  ++ AC  +  +E GR +   M    GY+       ++V++  + G 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQV-HAMVVRMGYDKDVFTANALVDMYMKMGR 252

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKM--HSETELAELTAEKLISMEPENAGNYVLLS 647
           +D A  + + MP   D   W  L+S C +  H    +  L   K   + P    N   LS
Sbjct: 253 VDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVP----NVFTLS 307

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           +I                     LK   G    ++G+ +H F
Sbjct: 308 SI---------------------LKACSGAGAFDLGRQIHGF 328


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/667 (32%), Positives = 368/667 (55%), Gaps = 17/667 (2%)

Query: 44  NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
           N   L ++    I+  G   ++ ++S+LI  YA+ G +  +++ F+ +   + +L+  ++
Sbjct: 24  NNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMI 83

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR-SCS-CLLDFISGEKIHAQVVKLG 161
               + GE +  + ++K M      P   T+  V+  SCS  ++++  G ++H  VV+ G
Sbjct: 84  NGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEY--GRQLHGLVVRSG 141

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQNGKSEK 216
            D    VG+ LV  Y K        +    RK  D+  +     WN +I   VQNG  + 
Sbjct: 142 LDFVPLVGNTLVTVYSK------GRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDD 195

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +  LF  M   G + DS T  + L S  E  SL+  + +H   V      D+ +N+AL+ 
Sbjct: 196 ASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALID 255

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           +Y K      A  +F+  +  D V++  MIS Y  +G  K++LE+   +++     +  T
Sbjct: 256 LYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALT 315

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + + + + +  I+ G+++H  +++N  + +  V +++++MY +C  L+ A  IF  + 
Sbjct: 316 FSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRIS 375

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K  + W+S+I  +    +  EA+ LF +M +EGV+ D VT+   L AC NI AL + K 
Sbjct: 376 IKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKE 435

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +HG+ +K    S     +A+   YAKCG + +A  +F+   +  K+ + WNS+I+AY  H
Sbjct: 436 IHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFN--LMQEKNEVAWNSIIAAYGYH 493

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G  +    L+  M +  ++PD ITFL +L++C +AG VE+G   F+ M E YG     EH
Sbjct: 494 GYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEH 553

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA M +L GRAGH+DEA E++  MPF P A VWG LL AC++H   ELAE+ +  L+ +E
Sbjct: 554 YACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLE 613

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
           P+N+G Y+LL+++ A AGKW  V K++  +++RG++K PGCSWIE+      F+AAD SH
Sbjct: 614 PKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSH 673

Query: 697 PQADAIY 703
           P++  IY
Sbjct: 674 PESPQIY 680



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 156/548 (28%), Positives = 281/548 (51%), Gaps = 7/548 (1%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            ++P + T+P VI+ C+ L +   G+ I   ++++GFD    V  +L++ Y   +G  E+
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYAD-NGCIED 63

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            +    +        WN +I+  VQ G+S+ + +LFK M    A+ DS T   +L  +  
Sbjct: 64  ARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCS 123

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
              +E GR +H + V S       V   L+++YSK   L DA+ LFD M   D VVWN M
Sbjct: 124 EAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRM 183

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I  Y Q+GF  ++  L   M+ +G + D  T  + + S++   +++  K++H  ++R+G 
Sbjct: 184 IGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGV 243

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              V ++++LID+Y +C D   A K+F+      +V +++MI GYV +  + +AL +F  
Sbjct: 244 ILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRW 303

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           +  + +  + +T  +ILPAC  + A++  + LHGY +K  L     V +AI   YAKCG 
Sbjct: 304 LLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGR 363

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +++A  +F   +I  KD I WNS+I+++++ G   +   L+ QM    V+ D +T    L
Sbjct: 364 LDLAHLIFG--RISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAAL 421

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           +AC N   +  G+ I   M +   +E      ++++N+  + G ++ AR LV ++  + +
Sbjct: 422 SACANIPALHYGKEIHGFMIKG-AFESDLFDMSALINMYAKCGKLNIAR-LVFNLMQEKN 479

Query: 606 ARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
              W  +++A   H      LA         ++P++     +LS+   A    +GV   R
Sbjct: 480 EVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFR 539

Query: 664 TFLRDRGL 671
               + G+
Sbjct: 540 CMTEEYGI 547



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 120/246 (48%), Gaps = 9/246 (3%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+  G   D +T    +   + + N+  GK +   +L  G D  + V +SLI +Y +   
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  AR+ FD +  K  V W+ MI GYV   +S  A++LF +M     + D VT   +L  
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
             +   +E+ + LHG  ++ GL+ +  V   +   Y+K   +  A +LFD   +   D++
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFD--MMPQIDLV 178

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WN MI  Y ++G       L+ +M  + ++PD ITF   L +     L E   +  K++
Sbjct: 179 VWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPS-----LAESSSL--KQI 231

Query: 565 KESYGY 570
           KE +GY
Sbjct: 232 KEIHGY 237


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/669 (32%), Positives = 380/669 (56%), Gaps = 10/669 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + +   GL  +L + ++L+D Y   G +   ++VF+ +   + + + ++L   S 
Sbjct: 122 EQVHCQCVKC-GLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               ++   ++  M ++   P   T   VI + +       G +IHA VVKLGF++   V
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLV 240

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+    K  G   + + +           WNS+I+  V NG+  ++FE F  M++ G
Sbjct: 241 CNSLISMLSK-SGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAG 299

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           A+    T  ++++S   LK L L R++HC  + S    + +V TAL+   +K   ++DA 
Sbjct: 300 AKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAF 359

Query: 289 MLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            LF  M     VV W  MIS Y Q+G   +++ L   M R G + + FT     S+I T+
Sbjct: 360 SLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFT----YSTILTV 415

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           ++  +  ++HA V++   +   SV  +L+D + +  +++ A K+F+ ++TK V++WS+M+
Sbjct: 416 QHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAML 475

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN-IGALEHVKYLHGYSMKLGL 466
            GY    ++ EA ++F ++  EG++ +  T  +I+ AC     ++E  K  H Y++KL L
Sbjct: 476 AGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRL 535

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           N+   V++++   YAK G IE A E+F  +K   +D+++WNSMIS YA+HG   +  +++
Sbjct: 536 NNALCVSSSLVTLYAKRGNIESAHEIFKRQK--ERDLVSWNSMISGYAQHGQAKKALEVF 593

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M++ ++  D ITF+G+++AC +AGLV +G+  F  M   +   P+ EHY+ M++L  R
Sbjct: 594 EEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSR 653

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG + +A +++  MPF P A VW  +L+A ++H   EL +L AEK+IS+EP+++  YVLL
Sbjct: 654 AGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLL 713

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SNIYAAAG W+    +R  +  R +KK PG SWIE+    + F A D SHP +D IY+ L
Sbjct: 714 SNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKL 773

Query: 707 GILELEIME 715
             L   + +
Sbjct: 774 SELNTRLRD 782



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 156/598 (26%), Positives = 295/598 (49%), Gaps = 26/598 (4%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLS----LSQQVFNSIT 92
           +L N   NP     +  R   LH  H N +L S+++   A   L       +QQ+F+   
Sbjct: 9   ALTNTSTNPI----LRIRRYQLH-CHANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTP 63

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             +   +  +L   S+  + ++ L ++  +    + P   T   V+  C+   +   GE+
Sbjct: 64  LRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQ 123

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H Q VK G      VG++LV+ Y K     +  +   +   +D+ S WNSL++    N 
Sbjct: 124 VHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVS-WNSLLTGYSWNR 182

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
            +++ +ELF LM++EG   D  T+  ++ +     ++ +G  +H + V   F  +  V  
Sbjct: 183 FNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCN 242

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           +L+SM SK   L DA+++FD M +KD V WN MI+ +  +G   E+ E    M  +G + 
Sbjct: 243 SLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKP 302

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
              T  + + S +++K +   + +H   L++G     +V  +L+    +C++++ A  +F
Sbjct: 303 THATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLF 362

Query: 393 DSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
             +   ++VVSW++MI GY+ +  + +A+ LFS M+ EGV+ +  T   IL        +
Sbjct: 363 SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-------TV 415

Query: 452 EHVKY---LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           +H  +   +H   +K      SSV TA+  ++ K G I  A ++F  E I++KD+I W++
Sbjct: 416 QHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF--ELIETKDVIAWSA 473

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN-AGLVEEGRIIFKEMKES 567
           M++ YA+ G+  +  K++ Q+ +  ++P+  TF  ++ AC      VE+G+  F      
Sbjct: 474 MLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGK-QFHAYAIK 532

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                +    +S+V L  + G+++ A E+ K    + D   W  ++S    H + + A
Sbjct: 533 LRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAKKA 589


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/645 (34%), Positives = 369/645 (57%), Gaps = 9/645 (1%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMA 123
           + ++++++  Y     L+ ++Q+F+ +     ++ + +++   S  G+  + L ++ +M 
Sbjct: 215 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 274

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
             S+ P   T+   +++C        G  IHA V+K  +     V +AL+  Y +   G 
Sbjct: 275 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARF--GK 332

Query: 184 ENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
             E   I     D  +  WNS++S  VQNG   ++ + +  MR  G + D   +I+++ +
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 392

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
           +    +   G  +H  A+ +    DL V  +L+ MY+K  S++    +FDKM DKD V W
Sbjct: 393 SARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 452

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
             +I+ + Q+G    +LEL   +   G   D+    + + + S +K I   K++H+ ++R
Sbjct: 453 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 512

Query: 363 NG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
            G SD  + + N ++D+Y EC +++ A ++F+ ++ K VVSW+SMI  YV +  + EAL 
Sbjct: 513 KGLSD--LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALE 570

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF  MK  GVE D +++++IL A  ++ AL+  K +HG+ ++ G     S+ + +   YA
Sbjct: 571 LFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYA 630

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG +E +  +F+   I +KD++ W SMI+AY  HG       L+ +M+   + PD I F
Sbjct: 631 RCGTLEKSRNVFN--FIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAF 688

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L AC ++GL+ EGR   + MK  Y  EP  EHYA +V+LLGRA H++EA + VK M 
Sbjct: 689 VAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGME 748

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +P A VW  LL AC++HS  EL E+ A+KL+ M+PEN GNYVL+SN+Y+A  +W  V  
Sbjct: 749 VEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEX 808

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +R  ++  GLKK PGCSWIE+G  VH F A D+SHPQ+  IY+ L
Sbjct: 809 VRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKL 853



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 324/606 (53%), Gaps = 19/606 (3%)

Query: 23  ANQTRPHMTATHSFS-LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANL 78
           ANQ+    +   ++S +L LC + + L   QQ+HA  I  + L  ++ LS+ L+  Y   
Sbjct: 68  ANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKC 127

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           G L  ++++F+ +       +  ++      GE   +L +Y++M +  +     T+P ++
Sbjct: 128 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCIL 187

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR--KFKD 196
           ++C  L D   G ++H   +K G+ S   V +++V  Y KC+      + +  R  + +D
Sbjct: 188 KACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN-DLNGARQLFDRMPEKED 246

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           + S WNS+IS    NG+S ++  LF  M+      ++ T +  L++  +   ++ G  +H
Sbjct: 247 VVS-WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 305

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              + S +  ++ V  AL++MY++   + +A  +F  M D D + WN M+S + Q+G   
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 365

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+L+    M  +G + DL   I+ +++ +   N   G Q+HA  ++NG D  + V NSL+
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLV 425

Query: 377 DMY---CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           DMY   C  + ++C   IFD +  K VVSW+++I G+  +     AL LF E++LEG+++
Sbjct: 426 DMYAKFCSMKYMDC---IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL 482

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D + I +IL AC  +  +  VK +H Y ++ GL+ L   N  + + Y +CG ++ A  +F
Sbjct: 483 DVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDV-YGECGNVDYAARMF 541

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E I+ KD+++W SMIS Y  +G  ++  +L+  MK++ V PD I+ + +L+A  +   
Sbjct: 542 --ELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSA 599

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +++G+ I   +    G+       +++V++  R G ++++R +   +  K D  +W  ++
Sbjct: 600 LKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMI 657

Query: 614 SACKMH 619
           +A  MH
Sbjct: 658 NAYGMH 663



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 141/498 (28%), Positives = 252/498 (50%), Gaps = 11/498 (2%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGF 183
           S +  ++ Y  V+  C        G+++HA ++     F+S   +   LV  Y KC    
Sbjct: 73  SQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF-LSTRLVFMYGKCGCLV 131

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           + EK       K + + WN++I   V NG+   S EL++ MR+ G   D+ T   +L++ 
Sbjct: 132 DAEKLFDGMPHKTIFT-WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 190

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-W 302
             LK    G  VH +A+   +   + V  +++ MY+K   L  A+ LFD+M +K+ VV W
Sbjct: 191 GLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSW 250

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N MISAY  +G   E+L L   M ++    + +T +AA+ +      I+ G  +HA VL+
Sbjct: 251 NSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 310

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           +     V V N+LI MY     +  A  IF ++     +SW+SM+ G+V +    EAL+ 
Sbjct: 311 SSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQF 370

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           + EM+  G + D V +I+I+ A    G   H   +H Y+MK GL+S   V  ++   YAK
Sbjct: 371 YHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAK 430

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              ++    +FD  K+  KD+++W ++I+ +A++G  S+  +L+ +++   +  D++   
Sbjct: 431 FCSMKYMDCIFD--KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 488

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L AC    L+   + I   +      +   ++   +V++ G  G++D A  + + + F
Sbjct: 489 SILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN--GIVDVYGECGNVDYAARMFELIEF 546

Query: 603 KPDARVWGPLLSACKMHS 620
           K D   W  ++S C +H+
Sbjct: 547 K-DVVSWTSMIS-CYVHN 562



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  ++I  G      L+S L+D YA  G L  S+ VFN I + + +L+ +++     
Sbjct: 604 KEIHG-FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 662

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            G     + ++++M  +S+ P    +  V+ +CS
Sbjct: 663 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/645 (34%), Positives = 369/645 (57%), Gaps = 9/645 (1%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMA 123
           + ++++++  Y     L+ ++Q+F+ +     ++ + +++   S  G+  + L ++ +M 
Sbjct: 251 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 310

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
             S+ P   T+   +++C        G  IHA V+K  +     V +AL+  Y +   G 
Sbjct: 311 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARF--GK 368

Query: 184 ENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
             E   I     D  +  WNS++S  VQNG   ++ + +  MR  G + D   +I+++ +
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 428

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
           +    +   G  +H  A+ +    DL V  +L+ MY+K  S++    +FDKM DKD V W
Sbjct: 429 SARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 488

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
             +I+ + Q+G    +LEL   +   G   D+    + + + S +K I   K++H+ ++R
Sbjct: 489 TTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR 548

Query: 363 NG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
            G SD  + + N ++D+Y EC +++ A ++F+ ++ K VVSW+SMI  YV +  + EAL 
Sbjct: 549 KGLSD--LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALE 606

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF  MK  GVE D +++++IL A  ++ AL+  K +HG+ ++ G     S+ + +   YA
Sbjct: 607 LFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYA 666

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG +E +  +F+   I +KD++ W SMI+AY  HG       L+ +M+   + PD I F
Sbjct: 667 RCGTLEKSRNVFN--FIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAF 724

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L AC ++GL+ EGR   + MK  Y  EP  EHY  +V+LLGRA H++EA + VK M 
Sbjct: 725 VAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGME 784

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +P A VW  LL AC++HS  EL E+ A+KL+ M+PEN GNYVL+SN+YAA  +W  V +
Sbjct: 785 VEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEE 844

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +R  ++  GLKK PGCSWIE+G  VH F A D+SHPQ+  IY+ L
Sbjct: 845 VRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKL 889



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/606 (28%), Positives = 324/606 (53%), Gaps = 19/606 (3%)

Query: 23  ANQTRPHMTATHSFS-LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANL 78
           ANQ+    +   ++S +L LC + + L   QQ+HA  I  + L  ++ LS+ L+  Y   
Sbjct: 104 ANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKC 163

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           G L  ++++F+ +       +  ++      GE   +L +Y++M +  +     T+P ++
Sbjct: 164 GCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCIL 223

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR--KFKD 196
           ++C  L D   G ++H   +K G+ S   V +++V  Y KC+      + +  R  + +D
Sbjct: 224 KACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN-DLNGARQLFDRMPEKED 282

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           + S WNS+IS    NG+S ++  LF  M+      ++ T +  L++  +   ++ G  +H
Sbjct: 283 VVS-WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIH 341

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              + S +  ++ V  AL++MY++   + +A  +F  M D D + WN M+S + Q+G   
Sbjct: 342 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 401

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+L+    M  +G + DL   I+ +++ +   N   G Q+HA  ++NG D  + V NSL+
Sbjct: 402 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLV 461

Query: 377 DMY---CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           DMY   C  + ++C   IFD +  K VVSW+++I G+  +     AL LF E++LEG+++
Sbjct: 462 DMYAKFCSMKYMDC---IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL 518

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D + I +IL AC  +  +  VK +H Y ++ GL+ L   N  + + Y +CG ++ A  +F
Sbjct: 519 DVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDV-YGECGNVDYAARMF 577

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E I+ KD+++W SMIS Y  +G  ++  +L+  MK++ V PD I+ + +L+A  +   
Sbjct: 578 --ELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSA 635

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +++G+ I   +    G+       +++V++  R G ++++R +   +  K D  +W  ++
Sbjct: 636 LKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMI 693

Query: 614 SACKMH 619
           +A  MH
Sbjct: 694 NAYGMH 699



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/503 (28%), Positives = 252/503 (50%), Gaps = 21/503 (4%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGF 183
           S +  ++ Y  V+  C        G+++HA ++     F+S   +   LV  Y KC    
Sbjct: 109 SQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF-LSTRLVFMYGKCGCLV 167

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           + EK       K + + WN++I   V NG+   S EL++ MR+ G   D+ T   +L++ 
Sbjct: 168 DAEKLFDGMPHKTIFT-WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 226

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-W 302
             LK    G  VH +A+   +   + V  +++ MY+K   L  A+ LFD+M +K+ VV W
Sbjct: 227 GLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSW 286

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N MISAY  +G   E+L L   M ++    + +T +AA+ +      I+ G  +HA VL+
Sbjct: 287 NSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLK 346

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           +     V V N+LI MY     +  A  IF ++     +SW+SM+ G+V +    EAL+ 
Sbjct: 347 SSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQF 406

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           + EM+  G + D V +I+I+ A    G   +   +H Y+MK GL+S   V  ++   YAK
Sbjct: 407 YHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAK 466

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              ++    +FD  K+  KD+++W ++I+ +A++G  S+  +L+ +++   +  D++   
Sbjct: 467 FCSMKYMDCIFD--KMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 524

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-----HYASMVNLLGRAGHMDEARELV 597
            +L AC        G  +   +KE + Y   +          +V++ G  G++D A  + 
Sbjct: 525 SILLAC-------SGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMF 577

Query: 598 KDMPFKPDARVWGPLLSACKMHS 620
           + + FK D   W  ++S C +H+
Sbjct: 578 ELIEFK-DVVSWTSMIS-CYVHN 598



 Score = 41.6 bits (96), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  ++I  G      L+S L+D YA  G L  S+ VFN I + + +L+ +++     
Sbjct: 640 KEIHG-FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGM 698

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            G     + ++++M  +S+ P    +  V+ +CS
Sbjct: 699 HGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/690 (31%), Positives = 373/690 (54%), Gaps = 47/690 (6%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLS---LSQQVFNS 90
           SL+  C +    Q+   IH + +I +G + +  L + ++  YA  G L     ++++F  
Sbjct: 76  SLIQDCIDSNSFQRGKSIHTQ-MISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +   N   + T++   ++  +Y +   ++ +M    + P   T+   +R C  L     G
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 194

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           +++H++++  GF     VG+AL++ Y KCD    +E+  + + F ++  R    WNS+IS
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKCD----DEESCL-KVFDEMGERNQVTWNSIIS 249

Query: 207 LAVQNGKSEKSFELFKLMRM--EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
              Q G    +  LF  M+   +G + D  T   LL      ++   GR +H   + ++ 
Sbjct: 250 AEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI 309

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
            K++ V T L+ MYS+   L  AK +F++M++++   WN MI  Y Q+G  +E+L L   
Sbjct: 310 TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQ 369

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M  +G + D F+  + +SS  ++ + + G+++H  ++RN  + +  +   L+DMY +C  
Sbjct: 370 MQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGS 429

Query: 385 LNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           ++ A K++D    K +    W+S++ GY       E+   F EM    +E D +T++ I 
Sbjct: 430 MDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTI- 488

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
              VN+  LE                     TA+   Y+KCG I  A  +FD   ++ K+
Sbjct: 489 ---VNLLVLE---------------------TALVDMYSKCGAITKARTVFD--NMNGKN 522

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I++WN+MIS Y+KHG   +   LY +M +  + P+ +TFL +L+AC + GLVEEG  IF 
Sbjct: 523 IVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFT 582

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M+E Y  E   EHY  MV+LLGRAG +++A+E V+ MP +P+   WG LL AC++H + 
Sbjct: 583 SMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 642

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           ++  L A++L  ++P+N G YV++SNIYAAAG+W  V  +R  ++ +G+KK PG SWIEI
Sbjct: 643 DMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 702

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELE 712
              +  F A  ++HP+ + IY  L  L L+
Sbjct: 703 NSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 732


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/684 (32%), Positives = 379/684 (55%), Gaps = 15/684 (2%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           T+  +F + N  +N +  Q   AR +     H+N + ++ +I  Y   G L  ++++F+ 
Sbjct: 52  TSRSNFRVGNFLKNGELSQ---ARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 108

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +    ++ +  ++   S+  ++++   ++ QM      P   T+  ++  C+        
Sbjct: 109 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 168

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLIS 206
            ++  Q++KLG+DS   VG+ LV+ Y K      N   +  + FK++       +N++I+
Sbjct: 169 TQVQTQIIKLGYDSRLIVGNTLVDSYCK-----SNRLDLACQLFKEMPEIDSVSYNAMIT 223

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              ++G  EK+  LF  M+  G +    T   +L + + L  + LG+ +H   + ++F  
Sbjct: 224 GYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVW 283

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           ++ V+ ALL  YSK  S+ DA+ LFD+M ++D V +N++IS Y   G  K + +L   + 
Sbjct: 284 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 343

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            + F    F     +S  S   + E G+Q+HA  +   +D ++ V NSL+DMY +C    
Sbjct: 344 FTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFE 403

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            A  IF ++  ++ V W++MI  YV      E L+LF++M+   V  D  T  ++L A  
Sbjct: 404 EAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASA 463

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           +I +L   K LH + +K G  S     +A+   YAKCG I+ A + F E  +  ++I++W
Sbjct: 464 SIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQE--MPDRNIVSW 521

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+MISAYA++G+     K + +M  S ++PD ++FLG+L+AC ++GLVEEG   F  M +
Sbjct: 522 NAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQ 581

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            Y  +P +EHYAS+V++L R+G  +EA +L+ +MP  PD  +W  +L+AC++H   ELA 
Sbjct: 582 IYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 641

Query: 627 LTAEKLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
             A++L +ME   +A  YV +SNIYAAAG+W  V+K+   +RDRG+KK P  SW+EI   
Sbjct: 642 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 701

Query: 686 VHEFWAADQSHPQADAIYTILGIL 709
            H F A D+ HPQ + I   + +L
Sbjct: 702 THMFSANDRCHPQIEEIRKKIDML 725



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 172/389 (44%), Gaps = 39/389 (10%)

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG------ 313
           V + F  D S +   +  + K   L  A+ LF+KM  K+ V  N+MIS Y +SG      
Sbjct: 44  VKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEAR 103

Query: 314 --FP-----------------------KESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
             F                        KE+ EL + M R G   D  T +  +S  +  +
Sbjct: 104 KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHE 163

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
                 Q+   +++ G D ++ V N+L+D YC+   L+ A ++F  +     VS+++MI 
Sbjct: 164 MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMIT 223

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV--KYLHGYSMKLGL 466
           GY       +A+ LF EM+  G++    T   +L  C NIG  + V  + +H + +K   
Sbjct: 224 GYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNF 281

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V+ A+   Y+K   +  A +LFDE  +  +D +++N +IS YA  G     F L+
Sbjct: 282 VWNVFVSNALLDFYSKHDSVIDARKLFDE--MPEQDGVSYNVIISGYAWDGKHKYAFDLF 339

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +++ +        F  +L+   N    E GR I  +   +   +       S+V++  +
Sbjct: 340 RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA-DSEILVGNSLVDMYAK 398

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G  +EA  +  ++  +  A  W  ++SA
Sbjct: 399 CGKFEEAEMIFTNLTHR-SAVPWTAMISA 426



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 37/228 (16%)

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH---- 413
           A +++ G D   S  N  +  + +  +L+ AR++F+ +  K  VS + MI GYV      
Sbjct: 41  ARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLG 100

Query: 414 ---------------------------DQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
                                      +Q  EA  LF +M+  G E D+VT + +L  C 
Sbjct: 101 EARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCN 160

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE-EKIDSKDIIT 505
                  +  +    +KLG +S   V   +  SY K   +++A +LF E  +IDS   ++
Sbjct: 161 GHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDS---VS 217

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           +N+MI+ Y+K G   +   L+ +M+ S ++P   TF  +L  C N GL
Sbjct: 218 YNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/690 (32%), Positives = 370/690 (53%), Gaps = 7/690 (1%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           H T   S  + +L E+     QIH   + + G   +++  S L+D YA    L  S  VF
Sbjct: 157 HTTLAVSLKICSLLEDQVLGIQIHGIAVQM-GFDYDVVTGSALVDMYAKCNSLEDSLDVF 215

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + +   N + +   +    +  +  + L ++K+M  + +  ++ TY  V RSC+ L    
Sbjct: 216 SELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASR 275

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G ++H   +K  F S   VG A ++ Y KCD   +  K        +L+S +N++I   
Sbjct: 276 LGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQS-YNAMIIGY 334

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            +N +  ++F+LF  ++     FD  +L   L +   +K    G  +H +A+ S+   ++
Sbjct: 335 ARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNI 394

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V  A+L MY K  +L +A  LFD+M  +D V WN +I+A  Q+    ++L     M+RS
Sbjct: 395 CVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRS 454

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
               D FT  + + + +  +    G ++H  ++++G   ++ V ++L+DMY +C  +  A
Sbjct: 455 KMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEA 514

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
            KI   ++ +T+VSW+++I G+    +S ++ R FS M   GVE D  T   +L  C N+
Sbjct: 515 EKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANL 574

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             +   K +H   +KL L S   + + +   Y+KCG   M   L    K   +D +TWN+
Sbjct: 575 ATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCG--NMHDSLLMFRKAPKRDSVTWNA 632

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI  +A HG   +  +L+  M   +++P+  TF+ +L AC + G  ++G   F++M   Y
Sbjct: 633 MICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIY 692

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
             EP  EHY+ MV++LGR+G ++EA  L++DMPF+ DA +W  LLS CK+    E+AE  
Sbjct: 693 ALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKA 752

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A  L+ ++PE++  Y LLSNIYA AG W  V+K+R  +R   LKK PGCSWIE+   VH 
Sbjct: 753 ASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHT 812

Query: 689 FWAADQSHPQADAIYTILGILELEIMEGRR 718
           F   D++HP+ + IY++L +L   I + RR
Sbjct: 813 FLVCDKAHPKCEMIYSLLDLL---ICDMRR 839



 Score =  208 bits (530), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 157/584 (26%), Positives = 288/584 (49%), Gaps = 29/584 (4%)

Query: 55  YIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNS------ITSPNSLLYGTILKNLS 107
           Y +   + Q  I+S N ++   A  G + L+Q VFNS      + S NSL+ G  L+N  
Sbjct: 79  YKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISG-YLQN-- 135

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G+ +K++ V+ +M    +     T    ++ CS L D + G +IH   V++GFD    
Sbjct: 136 --GDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVV 193

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
            G ALV+ Y KC+   E+   +    F +L  +    W++ I+  VQN +  +  +LFK 
Sbjct: 194 TGSALVDMYAKCN-SLEDSLDV----FSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKE 248

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M+ +G      T  ++ RS   L +  LG  +HC A+ +DF  D+ V TA L MY+K  +
Sbjct: 249 MQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDN 308

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           + DA  LF  + D +   +N MI  Y ++    ++ +L + + ++ F  D  +   A+S+
Sbjct: 309 MSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSA 368

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +K    G Q+H   +++     + V N+++DMY +C  L  A  +FD ++ +  VSW
Sbjct: 369 AAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSW 428

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I     ++   + L  F  M    +E D  T  ++L AC    A  +   +HG  +K
Sbjct: 429 NAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIK 488

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G+     V +A+   Y+KCG +E A ++    +++ + +++WN++IS ++         
Sbjct: 489 SGMGLKMFVGSALVDMYSKCGMMEEAEKI--HYRLEEQTMVSWNAIISGFSLQKKSEDSQ 546

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMV 581
           + ++ M +  V PD  T+  +L  C N   V  G+ I  +M +    E   + Y  +++V
Sbjct: 547 RFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIK---LELLSDVYITSTLV 603

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++  + G+M ++  + +  P K D+  W  ++     H   E A
Sbjct: 604 DMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLGEEA 646



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 145/547 (26%), Positives = 251/547 (45%), Gaps = 51/547 (9%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGM 189
           T+  + + CS       G++ HA ++  GF     V + L++ Y+KC   +  ++  + M
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 190 IQRKFKDLKS----------------------------RWNSLISLAVQNGKSEKSFELF 221
            QR      +                             WNSLIS  +QNG  +KS  +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             MR  G  FD  TL   L+    L+   LG  +H +AV   F  D+   +AL+ MY+K 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            SLED+  +F ++ DK+ + W+  I+   Q+      L+L   M R G      T  +  
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            S + +     G Q+H + L+      V V  + +DMY +C++++ A K+F  +    + 
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           S+++MI GY  ++Q  +A +LF +++      D V++   L A   I        LHG +
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLA 385

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K  L+S   V  AI   Y KCG +  A  LFDE +I  +D ++WN++I+A  ++    +
Sbjct: 386 IKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEI--RDPVSWNAIITACEQNESEGK 443

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNA-----GLVEEGRIIFKEM--KESYGYEPSQ 574
               +  M +S + PD  T+  +L AC        G+   GRII   M  K   G     
Sbjct: 444 TLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVG----- 498

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
              +++V++  + G M+EA ++   +  +     W  ++S   +  ++E ++     ++ 
Sbjct: 499 ---SALVDMYSKCGMMEEAEKIHYRLE-EQTMVSWNAIISGFSLQKKSEDSQRFFSHMLE 554

Query: 635 M--EPEN 639
           M  EP+N
Sbjct: 555 MGVEPDN 561


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/662 (33%), Positives = 367/662 (55%), Gaps = 14/662 (2%)

Query: 51   IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
            +HA+  I  GL+ N+ + S+LI+ YA    +  +++VF+++   N +L+  +L   ++ G
Sbjct: 371  VHAQ-AIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNG 429

Query: 111  EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
               K + ++ +M     +P E TY  ++ +C+CL     G ++H+ ++K  F+    V +
Sbjct: 430  YASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVEN 489

Query: 171  ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
             LV+ Y KC G  E  +    ++F+ +++R    WN++I   VQ    +++F +F+ M +
Sbjct: 490  TLVDMYAKC-GALEEAR----QQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMIL 544

Query: 227  EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            +G   D  +L ++L     L++LE G  VHC  V S     L   ++L+ MY K  ++E 
Sbjct: 545  DGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEA 604

Query: 287  AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            A+ +F  M  +  V  N +I+ Y Q+    E+++L   M   G      T  + + + + 
Sbjct: 605  ARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACTG 663

Query: 347  MKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWS 404
               +  G+Q+H  + + G  Y    +  SL+ MY   +    A  +F   +  K+ + W+
Sbjct: 664  PYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWT 723

Query: 405  SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
            ++I G+  +  S EAL+L+ EM       D  T  ++L AC  + +L   + +H     +
Sbjct: 724  AIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHV 783

Query: 465  GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            GL+S     +A+   YAKCG ++ + ++F EE     D+I+WNSMI  +AK+G      K
Sbjct: 784  GLDSDELTGSAVVDMYAKCGDMKSSVQVF-EEMGSKNDVISWNSMIVGFAKNGYAENALK 842

Query: 525  LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
            ++ +MK + +RPD +TFLG+LTAC +AG V EGR IF  M  SY   P  +H A M++LL
Sbjct: 843  IFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLL 902

Query: 585  GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
            GR G + EA E +  + F+P+A +W  LL AC++H +       AEKLI +EPEN+  YV
Sbjct: 903  GRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYV 962

Query: 645  LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
            LLSNIYAA+G W+ V  +R  +R++GL+K PGCSWI +G+  + F A D+ HP A  I+ 
Sbjct: 963  LLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHA 1022

Query: 705  IL 706
            +L
Sbjct: 1023 LL 1024



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/512 (27%), Positives = 263/512 (51%), Gaps = 40/512 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   +I  G   N     +LID Y+  G L  ++++F+++  P+++ +  ++    +
Sbjct: 202 KQVHCG-VIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQ 260

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L V++ M    + P +  +  VI +C                  +G    DD 
Sbjct: 261 VGLPEEALKVFEDMQKLGLVPDQVAFVTVITAC------------------VGLGRLDDA 302

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            D  V+          N   +           WN +IS  V+ G   ++ + FK M   G
Sbjct: 303 CDLFVQM--------PNTNVVA----------WNVMISGHVKRGCDIEAIDFFKNMWKTG 344

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +    TL ++L +   L++L  G +VH  A+      ++ V ++L++MY+K   +E AK
Sbjct: 345 VKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAK 404

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD + +++ V+WN M+  Y Q+G+  + ++L   M   GF  D FT  + +S+ + ++
Sbjct: 405 KVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLE 464

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +E G+Q+H+ ++++  +Y + V N+L+DMY +C  L  AR+ F+ ++ +  VSW+++I 
Sbjct: 465 CLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIV 524

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GYV  +   EA  +F  M L+G+  D V++ +IL  C N+ ALE  + +H + +K GL +
Sbjct: 525 GYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQT 584

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
                +++   Y KCG IE A  +F    + S+ +++ N++I+ YA++ D  +   L+ +
Sbjct: 585 CLYAGSSLIDMYVKCGAIEAARYVF--SCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQE 641

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           M+   + P  ITF  LL AC     +  GR I
Sbjct: 642 MQNEGLNPSEITFASLLDACTGPYKLNLGRQI 673



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 156/599 (26%), Positives = 287/599 (47%), Gaps = 64/599 (10%)

Query: 24  NQTRPHMTATHSFSLLNLC--------------ENPQHLQQ-------IHARYIILHGLH 62
           NQT  H   TH   LL +C              E PQ L Q       IHA+ +   G  
Sbjct: 58  NQTSEHKIFTH---LLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTLKF-GFG 113

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
               L S ++D YA  G +  + + FN +   + L + ++L   S+ G  E+ +  +  +
Sbjct: 114 SKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSL 173

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
               + P + TY  V+ SC+ L+D   G+++H  V+K+GF+       +L++ Y KC G 
Sbjct: 174 QNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKC-GS 232

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
             + + +           W ++I+  VQ G  E++ ++F+ M+  G   D    + +   
Sbjct: 233 LVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTV--- 289

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
                      I  CV                      L  L+DA  LF +M + + V W
Sbjct: 290 -----------ITACVG---------------------LGRLDDACDLFVQMPNTNVVAW 317

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N+MIS + + G   E+++    M ++G ++   T  + +S+I++++ + +G  +HA  ++
Sbjct: 318 NVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIK 377

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
            G +  V V +SLI+MY +CE +  A+K+FD++  + +V W++M+ GY  +  + + ++L
Sbjct: 378 QGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKL 437

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           FSEM+  G   D  T  +IL AC  +  LE  + LH + +K        V   +   YAK
Sbjct: 438 FSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAK 497

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG +E A + F  E I ++D ++WN++I  Y +  D  + F ++ +M    + PD ++  
Sbjct: 498 CGALEEARQQF--EFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLA 555

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
            +L+ C N   +E+G  +   + +S G +      +S++++  + G ++ AR +   MP
Sbjct: 556 SILSGCANLQALEQGEQVHCFLVKS-GLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP 613



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 146/559 (26%), Positives = 272/559 (48%), Gaps = 13/559 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  + +    +I +   LG L  +  +F  + + N + +  ++    K G   + +  +
Sbjct: 278 GLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFF 337

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           K M    +     T   V+ + + L     G  +HAQ +K G +S   VG +L+  Y KC
Sbjct: 338 KNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKC 397

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           +     +    ++ F  L  R    WN+++    QNG + K  +LF  MR  G   D  T
Sbjct: 398 E-----KMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFT 452

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
             ++L +   L+ LE+GR +H   +  +F  +L V   L+ MY+K  +LE+A+  F+ + 
Sbjct: 453 YTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIR 512

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           ++D V WN +I  Y Q     E+  +   M+  G   D  +  + +S  + ++ +E G+Q
Sbjct: 513 NRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQ 572

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H  ++++G    +   +SLIDMY +C  +  AR +F  + +++VVS +++I GY  +D 
Sbjct: 573 VHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL 632

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNT 474
            +EA+ LF EM+ EG+    +T  ++L AC     L   + +H    K G L     +  
Sbjct: 633 -VEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGV 691

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           ++ + Y        A  LF E +   K  I W ++IS + ++G   +  +LY +M +++ 
Sbjct: 692 SLLVMYMNSQRKTDADILFSEFQY-PKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNA 750

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           RPD  TF  +L AC     + +GR+I   +    G +  +   +++V++  + G M  + 
Sbjct: 751 RPDQATFASVLRACSILASLGDGRMI-HSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSV 809

Query: 595 ELVKDMPFKPDARVWGPLL 613
           ++ ++M  K D   W  ++
Sbjct: 810 QVFEEMGSKNDVISWNSMI 828



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 171/368 (46%), Gaps = 49/368 (13%)

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H   +   F     + +A++ +Y+K  ++E A   F+++  +D + WN ++S Y + 
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G  ++ +     +   G   + FT    +SS + + +I+ GKQ+H  V++ G ++     
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
            SLIDMY +C  L  ARKIFD+V     VSW++MI GYV      EAL++F +M+  G+ 
Sbjct: 221 GSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV 280

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D V  + ++ ACV +G L+                                    A +L
Sbjct: 281 PDQVAFVTVITACVGLGRLDD-----------------------------------ACDL 305

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA----- 547
           F   ++ + +++ WN MIS + K G   +    +  M ++ V+    T   +L+A     
Sbjct: 306 F--VQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLE 363

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
            +N GL+   + I K+   S  Y  S     S++N+  +   M+ A++ V D   + +  
Sbjct: 364 ALNYGLLVHAQAI-KQGLNSNVYVGS-----SLINMYAKCEKMEAAKK-VFDALDERNLV 416

Query: 608 VWGPLLSA 615
           +W  +L  
Sbjct: 417 LWNAMLGG 424


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/664 (33%), Positives = 372/664 (56%), Gaps = 18/664 (2%)

Query: 51   IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
            +HA   +  GLH N+ + S+L+  YA  G +  +++VF+++   N +L+  +L    + G
Sbjct: 349  VHAE-ALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNG 407

Query: 111  EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
               + + ++  M     YP + TY  ++ +C+CL     G ++H+ ++K  F S   VG+
Sbjct: 408  YANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGN 467

Query: 171  ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
            ALV+ Y K  G  E+ +    ++F+ +++R    WN +I   VQ     ++F LF+ M +
Sbjct: 468  ALVDMYAK-SGALEDAR----QQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNL 522

Query: 227  EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
             G   D  +L ++L +   ++ LE G+ VHC++V +     L   ++L+ MY+K  +++ 
Sbjct: 523  LGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDS 582

Query: 287  AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            A  +   M ++  V  N +I+ Y Q    ++++ L   M+  G  +   T  + + +   
Sbjct: 583  AHKILACMPERSVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHE 641

Query: 347  MKNIEWGKQMHANVLRNG---SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVS 402
             + +  G+Q+H+ +L+ G    D  + V  SL+ MY        A  +F      K+ V 
Sbjct: 642  QQKLNLGRQIHSLILKMGLQLDDEFLGV--SLLGMYMNSLRTTDASVLFSEFSNPKSAVV 699

Query: 403  WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
            W++MI G   +D S+ AL+L+ EM+   V  D  T ++ L AC  + +++     H    
Sbjct: 700  WTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIF 759

Query: 463  KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
              G +S    ++A+   YAKCG ++ + ++F +E    KD+I+WNSMI  +AK+G     
Sbjct: 760  HTGFDSDELTSSALVDMYAKCGDVKSSMQVF-KEMSRKKDVISWNSMIVGFAKNGYAEDA 818

Query: 523  FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
             +++ +MKQS V PD +TFLG+LTAC ++G V EGR+IF  M   YG +P  +H A MV+
Sbjct: 819  LRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVD 878

Query: 583  LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
            LLGR G + EA E +  + F+PDA+VW  +L AC++H +    +  AEKLI +EP+N+  
Sbjct: 879  LLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSP 938

Query: 643  YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            YVLLSNIYAA+G W+ V  +R  +R++G+KK PGCSWI +G+  + F A D+SH  A  I
Sbjct: 939  YVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEI 998

Query: 703  YTIL 706
              IL
Sbjct: 999  DAIL 1002



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/589 (27%), Positives = 275/589 (46%), Gaps = 74/589 (12%)

Query: 43  ENPQHLQQIHARYIILH------GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           E PQ L Q      I+H      G     +L + ++D YA    +  +++ F  +   + 
Sbjct: 66  EIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDI 125

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           L + +IL   SK G     +  +  +    ++P E T+  V+ SC+ L     G ++H  
Sbjct: 126 LAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCN 185

Query: 157 VVKLGFDSFDDVGDALVEFYIKC----------DGGFENEK-------------GMIQRK 193
           VVK+GF+S      AL+  Y KC          DG  E +K             G+ +  
Sbjct: 186 VVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEA 245

Query: 194 FK----------------------------------DLKSR--------WNSLISLAVQN 211
            K                                  DL SR        WN +IS   + 
Sbjct: 246 VKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKG 305

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   ++ E F+ MR  G +    TL ++L +   L +L+ G +VH  A+      ++ V 
Sbjct: 306 GYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVG 365

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           ++L+SMY+K   +E AK +FD +++++ V+WN M+  Y Q+G+  E +EL   M   GF 
Sbjct: 366 SSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFY 425

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  + +S+ + +K ++ G Q+H+ +++N     + V N+L+DMY +   L  AR+ 
Sbjct: 426 PDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQ 485

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ ++ +  VSW+ +I GYV  +  +EA  LF  M L G+  D V++ +IL AC ++  L
Sbjct: 486 FELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGL 545

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E  K +H  S+K G  +     +++   YAKCG I+ A ++     +  + +++ N++I+
Sbjct: 546 EQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKIL--ACMPERSVVSMNALIA 603

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            YA+  +  Q   L+  M    +    ITF  LL AC     +  GR I
Sbjct: 604 GYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQI 651



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 145/548 (26%), Positives = 270/548 (49%), Gaps = 13/548 (2%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I++Y +LG L  +  +F+ + + N + +  ++   +K G   + +  ++ M    +   
Sbjct: 267 VINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKST 326

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
             T   V+ + + L     G  +HA+ +K G  S   VG +LV  Y KC G  E  K + 
Sbjct: 327 RSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKC-GKMEAAKKVF 385

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
               +     WN+++   VQNG + +  ELF  M+  G   D  T  ++L +   LK L+
Sbjct: 386 DTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLD 445

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LG  +H V + + F  +L V  AL+ MY+K  +LEDA+  F+ + ++D V WN++I  Y 
Sbjct: 446 LGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYV 505

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           Q     E+  L   M   G   D  +  + +S+ ++++ +E GKQ+H   ++ G + ++ 
Sbjct: 506 QEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLY 565

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
             +SLIDMY +C  ++ A KI   +  ++VVS +++I GY   +   +A+ LF +M +EG
Sbjct: 566 SGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINLE-QAVNLFRDMLVEG 624

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFISYAKCGCIEMA 489
           +    +T  ++L AC     L   + +H   +K+GL      +  ++   Y        A
Sbjct: 625 INSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDA 684

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             LF E   + K  + W +MIS  +++       +LY +M+  +V PD  TF+  L AC 
Sbjct: 685 SVLFSEFS-NPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACA 743

Query: 550 NAGLVEEG----RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
               +++G     +IF       G++  +   +++V++  + G +  + ++ K+M  K D
Sbjct: 744 VVSSIKDGTETHSLIFHT-----GFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKD 798

Query: 606 ARVWGPLL 613
              W  ++
Sbjct: 799 VISWNSMI 806



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 215/447 (48%), Gaps = 47/447 (10%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IHAQ +KLGF S   +G+ +V+ Y KC      E+   Q + KD+ + WNS++S+  + G
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILA-WNSILSMHSKQG 139

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
                 + F L+   G   +  T   +L S   L+ ++ GR VHC  V   F        
Sbjct: 140 FPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEG 199

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+ MY+K   L DA+ +FD   + D+V W  MI  Y + G P+E++++   M + G   
Sbjct: 200 ALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEP 259

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D    +                                   ++I+ Y +   L+ A  +F
Sbjct: 260 DQVAFV-----------------------------------TVINAYVDLGRLDNASDLF 284

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +  + VV+W+ MI G+      +EA+  F  M+  G++    T+ ++L A  ++ AL+
Sbjct: 285 SRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALD 344

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
               +H  ++K GL+S   V +++   YAKCG +E A ++FD   ++ ++++ WN+M+  
Sbjct: 345 FGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFD--TLNEQNVVLWNAMLGG 402

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR----IIFKEMKESY 568
           Y ++G  ++  +L+  MK     PD  T+  +L+AC     ++ G     +I K    S 
Sbjct: 403 YVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASN 462

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARE 595
            +  +     ++V++  ++G +++AR+
Sbjct: 463 LFVGN-----ALVDMYAKSGALEDARQ 484



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 175/363 (48%), Gaps = 39/363 (10%)

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           +I+H  ++   F     +   ++ +Y+K A ++ A+  F ++ DKD + WN ++S + + 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           GFP   ++    +  SG   + FT    +SS + ++ ++ G+Q+H NV++ G +      
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
            +LI MY +C  L  AR IFD       VSW+SMI GY+      EA+++F EM+  G E
Sbjct: 199 GALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQE 258

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D V  + ++ A V++G L++                                   A +L
Sbjct: 259 PDQVAFVTVINAYVDLGRLDN-----------------------------------ASDL 283

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F   ++ +++++ WN MIS +AK G   +  + +  M+++ ++    T   +L+A  +  
Sbjct: 284 F--SRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLA 341

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            ++ G ++  E  +  G   +    +S+V++  + G M+ A++ V D   + +  +W  +
Sbjct: 342 ALDFGLLVHAEALKQ-GLHSNVYVGSSLVSMYAKCGKMEAAKK-VFDTLNEQNVVLWNAM 399

Query: 613 LSA 615
           L  
Sbjct: 400 LGG 402


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/506 (38%), Positives = 305/506 (60%), Gaps = 2/506 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I   V N   + + E + LMR EG   ++ T   +L++   L  L+LG  +H + V
Sbjct: 80  WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D+ V T+L+ +Y+K   LEDA  +FD + DK+ V W  +IS Y   G  +E+++
Sbjct: 140 KGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAID 199

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   ++      D FT +  +S+ + + ++  G+ +H  ++  G    V V  SL+DMY 
Sbjct: 200 MFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYA 259

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C ++  AR +FD +  K +VSW +MI+GY  +    EA+ LF +M+ E V+ D  T++ 
Sbjct: 260 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVG 319

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC  +GALE  +++ G   +        + TA+   YAKCG +  A E+F   K   
Sbjct: 320 VLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK--E 377

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD + WN++IS  A +G     F L+ Q+++  ++PD  TF+GLL  C +AGLV+EGR  
Sbjct: 378 KDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 437

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M   +   PS EHY  MV+LLGRAG +DEA +L+++MP + +A VWG LL AC++H 
Sbjct: 438 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHR 497

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           +T+LAEL  ++LI +EP N+GNYVLLSNIY+A  KW+  AK+R  + ++ ++K PGCSWI
Sbjct: 498 DTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWI 557

Query: 681 EIGKLVHEFWAADQSHPQADAIYTIL 706
           E+  +VHEF   D+ HP ++ IY  L
Sbjct: 558 EVDGIVHEFLVGDKYHPLSEKIYAKL 583



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 232/463 (50%), Gaps = 14/463 (3%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           H N +L+  L  S+ +    + ++ +F+ I  PN  L+ T+++ L     ++  +  Y  
Sbjct: 44  HDNYLLNMILRCSF-DFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGL 102

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M  +   P   T+PFV+++C+ LLD   G KIH  VVK GFD    V  +LV  Y KC G
Sbjct: 103 MRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC-G 161

Query: 182 GFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTL 236
             E+      + F D+  +    W ++IS  +  GK  ++ ++F +L+ M  A  DS T+
Sbjct: 162 YLEDA----HKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAP-DSFTI 216

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           + +L +  +L  L  G  +H   +     +++ V T+L+ MY+K  ++E A+ +FD M +
Sbjct: 217 VRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 276

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           KD V W  MI  Y  +G PKE+++L + M R   + D +T +  +S+ + +  +E G+ +
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV 336

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
              V RN   Y   +  +LID+Y +C  ++ A ++F  +K K  V W+++I G   +   
Sbjct: 337 SGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTA 475
             +  LF +++  G++ D  T I +L  C + G + E  +Y +       L         
Sbjct: 397 KISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 456

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           +     + G ++ A +L     +++  I+ W +++ A   H D
Sbjct: 457 MVDLLGRAGLLDEAHQLIRNMPMEANAIV-WGALLGACRIHRD 498



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 137/272 (50%), Gaps = 11/272 (4%)

Query: 373 NSLIDMYCECE----DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           N L++M   C     D N  R +F  +K   +  W++MI+G V++D   +A+  +  M+ 
Sbjct: 46  NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           EG   +  T   +L AC  +  L+    +H   +K G +    V T++   YAKCG +E 
Sbjct: 106 EGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLED 165

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A ++FD+  I  K++++W ++IS Y   G + +   ++ ++ + ++ PD  T + +L+AC
Sbjct: 166 AHKVFDD--IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSAC 223

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
              G +  G  I K + E  G   +     S+V++  + G+M++AR +   MP K D   
Sbjct: 224 TQLGDLNSGEWIHKCIME-MGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK-DIVS 281

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENA 640
           WG ++    ++    L +   +  + M+ EN 
Sbjct: 282 WGAMIQGYALNG---LPKEAIDLFLQMQRENV 310


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 237/753 (31%), Positives = 391/753 (51%), Gaps = 61/753 (8%)

Query: 4   LLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQ 63
           L+P A +    ++K   F  + + P +T       ++ C+    ++ IH + +    L  
Sbjct: 6   LIPNAAAKSHQYIKVSLF--STSAPEITP----PFIHKCKTISQVKLIHQKLLSFGILTL 59

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLY--GTILKNLSKFGEYEKTLLVYKQ 121
           NL  +S+LI +Y ++G LS +  +       ++ +Y   +++++    G   K L ++  
Sbjct: 60  NL--TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGL 117

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M   S  P   T+PFV ++C  +     GE  HA  +  GF S   VG+ALV  Y +C  
Sbjct: 118 MHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLL 240
             +  K   +    D+ S WNS+I    + GK + + E+F  M  E G   D+ TL+N+L
Sbjct: 178 LSDARKVFDEMSVWDVVS-WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVL 236

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
                L +  LG+ +HC AV S+  +++ V   L+ MY+K   +++A  +F  MS KD V
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296

Query: 301 VWNIM-----------------------------------ISAYYQSGFPKESLELLMCM 325
            WN M                                   IS Y Q G   E+L +   M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA-------NVLRNGSDYQVSVHNSLIDM 378
           + SG + +  T I+ +S  +++  +  GK++H        ++ +NG   +  V N LIDM
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416

Query: 379 YCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV--D 434
           Y +C+ ++ AR +FDS+  K + VV+W+ MI GY  H  + +AL L SEM  E  +   +
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELF 493
             TI   L AC ++ AL   K +H Y+++   N++   V+  +   YAKCG I  A  +F
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   + +K+ +TW S+++ Y  HG   +   ++ +M++   + D +T L +L AC ++G+
Sbjct: 537 DN--MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGM 594

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +++G   F  MK  +G  P  EHYA +V+LLGRAG ++ A  L+++MP +P   VW   L
Sbjct: 595 IDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFL 654

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
           S C++H + EL E  AEK+  +   + G+Y LLSN+YA AG+W  V ++R+ +R +G+KK
Sbjct: 655 SCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKK 714

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            PGCSW+E  K    F+  D++HP A  IY +L
Sbjct: 715 RPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/644 (32%), Positives = 361/644 (56%), Gaps = 3/644 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G H +L   S LI  YA+ G +  +++VF+ +   +++L+  +L+   K G+++  +  +
Sbjct: 142 GFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTF 201

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M          TY  ++  C+   +F +G ++H  V+  GF+    V + LV  Y KC
Sbjct: 202 CEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKC 261

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G     + +     +     WN LI+  VQNG ++++  LF  M   G + DS T  + 
Sbjct: 262 -GNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASF 320

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S +E  SL   + VH   V      D+ + +AL+ +Y K   +E A+ +F +    D 
Sbjct: 321 LPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDV 380

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
            V   MIS Y   G   +++     +++ G   +  T  + + + + +  ++ GK++H +
Sbjct: 381 AVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCH 440

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +L+   +  V+V +++ DMY +C  L+ A + F  +  +  V W+SMI  +  + +   A
Sbjct: 441 ILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIA 500

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + LF +M + G + D V++ + L A  N+ AL + K +HGY ++   +S + V + +   
Sbjct: 501 IDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDM 560

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG + +A  +F+   +D K+ ++WNS+I+AY  HG   +C  LY +M ++ + PD +
Sbjct: 561 YSKCGNLALAWCVFN--LMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHV 618

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL +++AC +AGLV+EG   F  M   YG     EHYA MV+L GRAG + EA + +K 
Sbjct: 619 TFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKS 678

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPF PDA VWG LL AC++H   ELA+L +  L+ ++P+N+G YVLLSN++A AG+W  V
Sbjct: 679 MPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASV 738

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
            K+R+ ++++G++K PG SWI++    H F AAD +HP++  IY
Sbjct: 739 LKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPESVEIY 782



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 258/510 (50%), Gaps = 15/510 (2%)

Query: 37  SLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SL   C +    Q  +Q+H + +I+ G+      SS ++  Y   G    +  +F  +  
Sbjct: 16  SLFRACSDASMVQQARQVHTQ-VIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELEL 74

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             +L +  +++ L   G ++  LL Y +M   ++ P + T+P+VI++C  L +      +
Sbjct: 75  RYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVV 134

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           H     LGF      G AL++ Y   D G+  +    +R F +L  R    WN ++   V
Sbjct: 135 HDTARSLGFHVDLFAGSALIKLY--ADNGYIRDA---RRVFDELPLRDTILWNVMLRGYV 189

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++G  + +   F  MR   +  +S T   +L       +   G  +H + + S F  D  
Sbjct: 190 KSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQ 249

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V   L++MYSK  +L  A+ LF+ M   D V WN +I+ Y Q+GF  E+  L   M+ +G
Sbjct: 250 VANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG 309

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            + D  T  + + SI    ++   K++H+ ++R+   + V + ++LID+Y +  D+  AR
Sbjct: 310 VKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMAR 369

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           KIF       V   ++MI GYV H  +++A+  F  +  EG+  + +T+ ++LPAC  + 
Sbjct: 370 KIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVA 429

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL+  K LH + +K  L ++ +V +AI   YAKCG +++A E F   ++  +D + WNSM
Sbjct: 430 ALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFF--RRMSDRDSVCWNSM 487

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           IS+++++G       L+ QM  S  + D +
Sbjct: 488 ISSFSQNGKPEIAIDLFRQMGMSGAKFDSV 517



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 233/495 (47%), Gaps = 17/495 (3%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           + R+CS         ++H QV+  G          ++  Y+ C G F +   +    F +
Sbjct: 17  LFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLC-GRFRDAGNL----FFE 71

Query: 197 LKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF--DSGTLINLLRSTVELKSLE 250
           L+ R    WN +I      G  +  F L    +M G+    D  T   ++++   L ++ 
Sbjct: 72  LELRYALPWNWMIRGLYMLGWFD--FALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVP 129

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           L  +VH  A    F  DL   +AL+ +Y+    + DA+ +FD++  +D ++WN+M+  Y 
Sbjct: 130 LCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYV 189

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           +SG    ++     M  S    +  T    +S  +T  N   G Q+H  V+ +G ++   
Sbjct: 190 KSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQ 249

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V N+L+ MY +C +L  ARK+F+++     V+W+ +I GYV +  + EA  LF+ M   G
Sbjct: 250 VANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG 309

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V+ D VT  + LP+ +  G+L H K +H Y ++  +     + +A+   Y K G +EMA 
Sbjct: 310 VKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMAR 369

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++F +  +   D+    +MIS Y  HG        +  + Q  +  + +T   +L AC  
Sbjct: 370 KIFQQNIL--VDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAA 427

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
              ++ G+ +   + +    E      +++ ++  + G +D A E  + M  + D+  W 
Sbjct: 428 VAALKPGKELHCHILKKR-LENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDR-DSVCWN 485

Query: 611 PLLSACKMHSETELA 625
            ++S+   + + E+A
Sbjct: 486 SMISSFSQNGKPEIA 500



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 139/317 (43%), Gaps = 2/317 (0%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L +L R+  +   ++  R VH   +V       + ++ +L +Y       DA  LF ++ 
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            +  + WN MI   Y  G+   +L     M+ S    D +T    + +   + N+     
Sbjct: 74  LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV 133

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H      G    +   ++LI +Y +   +  AR++FD +  +  + W+ M++GYV    
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGD 193

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
              A+  F EM+     V+ VT   IL  C   G       LHG  +  G      V   
Sbjct: 194 FDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANT 253

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+KCG +  A +LF+   +   D +TWN +I+ Y ++G   +   L+  M  + V+
Sbjct: 254 LVAMYSKCGNLLYARKLFN--TMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 311

Query: 536 PDLITFLGLLTACVNAG 552
           PD +TF   L + + +G
Sbjct: 312 PDSVTFASFLPSILESG 328



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 34/203 (16%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  Y+I +    +  ++S LID Y+  G L+L+  VFN +   N + + +I+     
Sbjct: 536 KEMHG-YVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGN 594

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L +Y +M    ++P   T+  +I +C            HA +V  G       
Sbjct: 595 HGCPRECLDLYHEMLRAGIHPDHVTFLVIISACG-----------HAGLVDEGIH----- 638

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
                  Y  C      E G+  R        +  ++ L  + G+  ++F+  K M    
Sbjct: 639 -------YFHC---MTREYGIGAR-----MEHYACMVDLYGRAGRVHEAFDTIKSMPFTP 683

Query: 229 AEFDSGTLINLLR--STVELKSL 249
                GTL+   R    VEL  L
Sbjct: 684 DAGVWGTLLGACRLHGNVELAKL 706


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/638 (34%), Positives = 348/638 (54%), Gaps = 75/638 (11%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  VF +I  PN L++ T+ +  +   +    L +Y  M    + P   T+PF+++S
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+ L     G +IH  V+KLG++         ++ Y+                       
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYE---------LDLYVH---------------------- 101

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
             SLIS+ VQN + E + ++F                               R  H    
Sbjct: 102 -TSLISMYVQNERLEDAHKVFD------------------------------RSSH---- 126

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                +D+   TAL++ Y+    +E A+ +FD++  KD V WN MIS Y ++G  KE+LE
Sbjct: 127 -----RDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALE 181

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M+++  R D  T +  +S+ +   +IE G+Q+H+ +  +G    + + N+LID Y 
Sbjct: 182 LFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYS 241

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C ++  A  +F  +  K V+SW+ +I GY   +   EAL LF EM   G   + VT+++
Sbjct: 242 KCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLS 301

Query: 441 ILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           IL AC ++GA++  +++H Y  K   G+ + SS+ T++   Y+KCG IE A ++F+   +
Sbjct: 302 ILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFN--SM 359

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             K +  WN+MI  +A HG  +  F ++++M++++++PD ITF+GLL+AC +AG+++ GR
Sbjct: 360 LHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR 419

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            IF+ M  +Y   P  EHY  M++LLG +G   EA E++  M  +PD  +W  LL ACKM
Sbjct: 420 HIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKM 479

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H   EL E  A+ L  +EP N G+YVLLSNIYA AG+WN VA++R  L D+G+KK PGCS
Sbjct: 480 HGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCS 539

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
            IEI  +VHEF   D+ HP+   IY +L  +E+ + E 
Sbjct: 540 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEA 577



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 148/313 (47%), Gaps = 45/313 (14%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           E L  A  +F++++   ++ W++M +G+      + AL+L+  M   G+  +  T   +L
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 443 PACVNIGALEHVKYLHGYSMKLG----------LNSLSSVN------------------- 473
            +C  + A +    +HG+ +KLG          L S+   N                   
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 474 --TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
             TA+   YA  G IE A  +FDE  I  KD+++WN+MIS Y + G++ +  +L+ +M +
Sbjct: 131 SYTALVTGYASRGYIESARNMFDE--IPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           ++VRPD  T + +++A   +G +E GR +   + + +G+  + +   ++++   + G M+
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEME 247

Query: 592 EARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            A  L   + +K D   W  L+     ++   E   L  E L S E  N  +  +LS ++
Sbjct: 248 TACGLFLGLSYK-DVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPN--DVTMLSILH 304

Query: 651 AAA-------GKW 656
           A A       G+W
Sbjct: 305 ACAHLGAIDIGRW 317



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 118/269 (43%), Gaps = 6/269 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H+ +I  HG   NL + + LID Y+  G +  +  +F  ++  + + +  ++   + 
Sbjct: 215 RQVHS-WIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTH 273

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL--GFDSFD 166
              Y++ LL++++M      P + T   ++ +C+ L     G  IH  + K   G  +  
Sbjct: 274 LNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNAS 333

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            +  +L++ Y KC G  E    +           WN++I     +G++  +F++F  MR 
Sbjct: 334 SLRTSLIDMYSKC-GDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRK 392

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
              + D  T + LL +      L+LGR I   +         L     ++ +       +
Sbjct: 393 NEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFK 452

Query: 286 DAKMLFDKMS-DKDRVVWNIMISAYYQSG 313
           +A+ +   M+ + D V+W  ++ A    G
Sbjct: 453 EAEEMISTMTMEPDGVIWCSLLKACKMHG 481


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/675 (30%), Positives = 369/675 (54%), Gaps = 7/675 (1%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + L    Q+HA   +  GL  ++   S L+D Y     L  +   F  +   
Sbjct: 197 LLKSCSALEELSLGVQVHA-LAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 255

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + +G  +    +  +Y + L ++ +M    +  ++ +Y    RSC+ +    +G ++H
Sbjct: 256 NWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 315

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F S   VG A+V+ Y K +   +  +         +++  N+++   V+ G  
Sbjct: 316 AHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS-NAMMVGLVRAGLG 374

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            ++  LF+ M      FD  +L  +  +  E K    G+ VHC+A+ S F  D+ VN A+
Sbjct: 375 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 434

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L +Y K  +L +A ++F  M  KD V WN +I+A  Q+G   +++     M+R G + D 
Sbjct: 435 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDD 494

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT  + + + + ++++E+G  +H  V+++G      V ++++DMYC+C  ++ A+K+ D 
Sbjct: 495 FTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDR 554

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  + VVSW++++ G+  + +S EA + FSEM   G++ D  T   +L  C N+  +E  
Sbjct: 555 IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 614

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K +HG  +K  +     +++ +   YAKCG  +M   L   EK++ +D ++WN+MI  YA
Sbjct: 615 KQIHGQIIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGYA 672

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            HG   +  +++ +M++ +V P+  TF+ +L AC + GL ++G   F  M   Y  EP  
Sbjct: 673 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 732

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EH+A MV++LGR+    EA + +  MPF+ DA +W  LLS CK+  + E+AEL A  ++ 
Sbjct: 733 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLL 792

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++P+++  Y+LLSN+YA +GKW  V++ R  L+   LKK PGCSWIE+   +H F   D+
Sbjct: 793 LDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDK 852

Query: 695 SHPQADAIYTILGIL 709
           +HP++  +Y +L  L
Sbjct: 853 AHPRSGELYEMLNDL 867



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 144/556 (25%), Positives = 282/556 (50%), Gaps = 15/556 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++ +Y++ G +S +  +F+ +  P+ + +  ++    + G +++++ ++ +MA + + 
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 188

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFEN 185
           P   T+  +++SCS L +   G ++HA  VK G +     G ALV+ Y KC   D     
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
             GM +R +      W + I+  VQN +  +  ELF  M+  G      +  +  RS   
Sbjct: 249 FYGMPERNWVS----WGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 304

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +  L  GR +H  A+ + F  D  V TA++ +Y+K  SL DA+  F  + +      N M
Sbjct: 305 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAM 364

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           +    ++G   E++ L   M+RS  R D+ +     S+ +  K    G+Q+H   +++G 
Sbjct: 365 MVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF 424

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D  + V+N+++D+Y +C+ L  A  IF  +K K  VSW+++I     +    + +  F+E
Sbjct: 425 DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNE 484

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M   G++ D  T  ++L AC  + +LE+   +H   +K GL S + V + +   Y KCG 
Sbjct: 485 MLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 544

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           I+ A +L D  +I  + +++WN+++S ++ + +  +  K +++M    ++PD  TF  +L
Sbjct: 545 IDEAQKLHD--RIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVL 602

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFK 603
             C N   +E G+ I  ++ +    E   + Y  +++V++  + G M ++  LV +   K
Sbjct: 603 DTCANLATIELGKQIHGQIIKQ---EMLDDEYISSTLVDMYAKCGDMPDSL-LVFEKVEK 658

Query: 604 PDARVWGPLLSACKMH 619
            D   W  ++    +H
Sbjct: 659 RDFVSWNAMICGYALH 674



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 211/435 (48%), Gaps = 4/435 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+L+S   Q G  ++S +LF  M   G   D  T   LL+S   L+ L LG  VH +AV
Sbjct: 159 WNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAV 218

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D+   +AL+ MY K  SL+DA   F  M +++ V W   I+   Q+      LE
Sbjct: 219 KTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLE 278

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L + M R G      +  +A  S + M  +  G+Q+HA+ ++N       V  +++D+Y 
Sbjct: 279 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYA 338

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   L  AR+ F  +   TV + ++M+ G V     +EA+ LF  M    +  D V++  
Sbjct: 339 KANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSG 398

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +  AC         + +H  ++K G +    VN A+   Y KC  +  A  +F  + +  
Sbjct: 399 VFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF--QGMKQ 456

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD ++WN++I+A  ++G +      + +M +  ++PD  T+  +L AC     +E G ++
Sbjct: 457 KDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMV 516

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
             ++ +S G        +++V++  + G +DEA++L  D         W  +LS   ++ 
Sbjct: 517 HDKVIKS-GLGSDAFVASTVVDMYCKCGIIDEAQKL-HDRIGGQQVVSWNAILSGFSLNK 574

Query: 621 ETELAELTAEKLISM 635
           E+E A+    +++ M
Sbjct: 575 ESEEAQKFFSEMLDM 589



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 183/405 (45%), Gaps = 48/405 (11%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +S NT +L+ YS    +  A  LFD M D D V WN ++S Y Q G  +ES++L + M R
Sbjct: 126 VSWNT-MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR 184

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T    + S S ++ +  G Q+HA  ++ G +  V   ++L+DMY +C  L+ 
Sbjct: 185 RGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDD 244

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A   F  +  +  VSW + I G V ++Q +  L LF EM+  G+ V   +  +   +C  
Sbjct: 245 ALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 304

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  L   + LH +++K   +S   V TAI   YAK   +  A   F    + +  + T N
Sbjct: 305 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF--FGLPNHTVETSN 362

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-------------------- 547
           +M+    + G   +   L+  M +S +R D+++  G+ +A                    
Sbjct: 363 AMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKS 422

Query: 548 ------CVNAGLVE---------EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
                 CVN  +++         E  +IF+ MK+          + +++  L + GH D+
Sbjct: 423 GFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-----DSVSWNAIIAALEQNGHYDD 477

Query: 593 A----RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                 E+++    KPD   +G +L AC      E   +  +K+I
Sbjct: 478 TILHFNEMLR-FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 521


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/675 (34%), Positives = 359/675 (53%), Gaps = 14/675 (2%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
            +L+N       L Q HA+ IIL+GLH +L+  + L    ++L  +  +  +F++I +P+
Sbjct: 14  LTLINRVSTLHQLNQTHAQ-IILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPD 72

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIH 154
             LY  +++  S        + +Y  +   + + P   TY FVI   S  L        H
Sbjct: 73  LFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGAS-SLGLGLLLHAH 131

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQN 211
           + V   G D F  VG A+V  Y K        K   GM++R        WN+++S  V+N
Sbjct: 132 SIVAGFGSDLF--VGSAIVACYFKFSRVAAARKVFDGMLERD----TVLWNTMVSGLVKN 185

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
              +++  +F  M   G  FDS T+  +L    EL+ L LG  + C+A+   F     V 
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T L  +YSK   +E A++LF ++   D V +N MIS Y  +   + S+ L   ++ SG +
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  + +  +       ++   + +H    ++G     SV  +L  +Y    ++  AR +
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLL 365

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD    K++ SW++MI GY  +  + +A+ LF EM+   V  + VT+ +IL AC  +GAL
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGAL 425

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              K++H    +    S   V+TA+   YAKCG I  A  LF    +  K+ +TWN+MIS
Sbjct: 426 SLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFS--MMPEKNAVTWNAMIS 483

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            Y  HG   +   L+ +M  S V P  +TFL +L AC +AGLV EG  IF+ M   +G+E
Sbjct: 484 GYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFE 543

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P  EHYA MV+LLGRAG++D+A + ++ MP +P   VWG LL AC +H +  LA L ++K
Sbjct: 544 PLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDK 603

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  ++P+N G YVLLSNIY+A   +   A +R  ++ R L KTPGC+ IE+   +H F +
Sbjct: 604 LFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTS 663

Query: 692 ADQSHPQADAIYTIL 706
            DQSHPQA AIY +L
Sbjct: 664 GDQSHPQATAIYAML 678


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/638 (33%), Positives = 355/638 (55%), Gaps = 11/638 (1%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           ++Q+F  +T  +   + T+LK+LS+  ++E+ L  +  M      P   T P  +++C  
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 144 LLDFISGEKIHAQV---VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           L +   GE IH  V   V LG D +  VG +L+  YIKC    E  +   + +  D+ + 
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGSDLY--VGSSLIYMYIKCGRMIEALRMFDELEKPDIVT- 129

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           W+S++S   +NG   ++ E F+ M M      D  TLI L+ +  +L +  LGR VH   
Sbjct: 130 WSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFV 189

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +   F  DLS+  +LL+ Y+K  + ++A  LF  +++KD + W+ +I+ Y Q+G   E+L
Sbjct: 190 IRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEAL 249

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            +   M+  G   ++ T +  + + +   ++E G++ H   +R G + +V V  +L+DMY
Sbjct: 250 LVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMY 309

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTI 438
            +C     A  +F  +  K VVSW ++I G+  +  +  ++  FS M LE     D + +
Sbjct: 310 MKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILM 369

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + +L +C  +G LE  K  H Y +K G +S   +  ++   Y++CG +  A ++F+   I
Sbjct: 370 VKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN--GI 427

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEG 557
             KD + W S+I+ Y  HG  ++  + +  M K S+V+P+ +TFL +L+AC +AGL+ EG
Sbjct: 428 ALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEG 487

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
             IFK M   Y   P+ EHYA +V+LLGR G +D A E+ K MPF P  ++ G LL AC+
Sbjct: 488 LRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACR 547

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H   E+AE  A+KL  +E  +AG Y+L+SN+Y   G+W  V K+R  ++ RG+KK    
Sbjct: 548 IHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAE 607

Query: 678 SWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           S IEI + VH F A D+ HP+ + +Y +L  L+L + E
Sbjct: 608 SLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMKE 645



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 171/341 (50%), Gaps = 12/341 (3%)

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K +S  DA+ +F +M+ +    WN ++ +  +    +E L     M R   + D FT   
Sbjct: 6   KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV 65

Query: 340 AVSSISTMKNIEWGKQMHANVLRN---GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
           A+ +   ++ + +G+ +H  V ++   GSD  V   +SLI MY +C  +  A ++FD ++
Sbjct: 66  ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVG--SSLIYMYIKCGRMIEALRMFDELE 123

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVK 455
              +V+WSSM+ G+  +    +A+  F  M +   V  D VT+I ++ AC  +      +
Sbjct: 124 KPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGR 183

Query: 456 YLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
            +HG+ ++ G  N LS VN+ +   YAK    + A  LF  + I  KD+I+W+++I+ Y 
Sbjct: 184 CVHGFVIRRGFSNDLSLVNS-LLNCYAKSRAFKEAVNLF--KMIAEKDVISWSTVIACYV 240

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           ++G  ++   ++  M      P++ T L +L AC  A  +E+GR    E+    G E   
Sbjct: 241 QNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKT-HELAIRKGLETEV 299

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +   ++V++  +    +EA  +   +P K D   W  L+S 
Sbjct: 300 KVSTALVDMYMKCFSPEEAYAVFSRIPRK-DVVSWVALISG 339



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 163/343 (47%), Gaps = 10/343 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           ++I  G   +L L ++L++ YA       +  +F  I   + + + T++    + G   +
Sbjct: 188 FVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAE 247

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            LLV+  M      P   T   V+++C+   D   G K H   ++ G ++   V  ALV+
Sbjct: 248 ALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVD 307

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDS 233
            Y+KC    E      +   KD+ S W +LIS    NG + +S E F +M +E     D+
Sbjct: 308 MYMKCFSPEEAYAVFSRIPRKDVVS-WVALISGFTLNGMAHRSIEEFSIMLLENNTRPDA 366

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
             ++ +L S  EL  LE  +  H   +   F  +  +  +L+ +YS+  SL +A  +F+ 
Sbjct: 367 ILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNG 426

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEW 352
           ++ KD VVW  +I+ Y   G   ++LE    MV+S   + +  T ++ +S+ S    I  
Sbjct: 427 IALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHE 486

Query: 353 GKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCARKI 391
           G ++   ++   +DY+++     +  L+D+     DL+ A +I
Sbjct: 487 GLRIFKLMV---NDYRLAPNLEHYAVLVDLLGRVGDLDTAIEI 526


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/675 (30%), Positives = 369/675 (54%), Gaps = 7/675 (1%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + L    Q+HA   +  GL  ++   S L+D Y     L  +   F  +   
Sbjct: 155 LLKSCSALEELSLGVQVHA-LAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 213

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + +G  +    +  +Y + L ++ +M    +  ++ +Y    RSC+ +    +G ++H
Sbjct: 214 NWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 273

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F S   VG A+V+ Y K +   +  +         +++  N+++   V+ G  
Sbjct: 274 AHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS-NAMMVGLVRAGLG 332

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            ++  LF+ M      FD  +L  +  +  E K    G+ VHC+A+ S F  D+ VN A+
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 392

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L +Y K  +L +A ++F  M  KD V WN +I+A  Q+G   +++     M+R G + D 
Sbjct: 393 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDD 452

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT  + + + + ++++E+G  +H  V+++G      V ++++DMYC+C  ++ A+K+ D 
Sbjct: 453 FTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDR 512

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  + VVSW++++ G+  + +S EA + FSEM   G++ D  T   +L  C N+  +E  
Sbjct: 513 IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 572

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K +HG  +K  +     +++ +   YAKCG  +M   L   EK++ +D ++WN+MI  YA
Sbjct: 573 KQIHGQIIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGYA 630

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            HG   +  +++ +M++ +V P+  TF+ +L AC + GL ++G   F  M   Y  EP  
Sbjct: 631 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 690

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EH+A MV++LGR+    EA + +  MPF+ DA +W  LLS CK+  + E+AEL A  ++ 
Sbjct: 691 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLL 750

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++P+++  Y+LLSN+YA +GKW  V++ R  L+   LKK PGCSWIE+   +H F   D+
Sbjct: 751 LDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDK 810

Query: 695 SHPQADAIYTILGIL 709
           +HP++  +Y +L  L
Sbjct: 811 AHPRSGELYEMLNDL 825



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/556 (26%), Positives = 281/556 (50%), Gaps = 15/556 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++ +Y++ G +S +  +F+ +  P+ + +  ++    + G +++++ ++ +MA + + 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFEN 185
           P   T+  +++SCS L +   G ++HA  VK G +     G ALV+ Y KC   D     
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
             GM +R +      W + I+  VQN +  +  ELF  M+  G      +  +  RS   
Sbjct: 207 FYGMPERNW----VSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 262

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +  L  GR +H  A+ + F  D  V TA++ +Y+K  SL DA+  F  + +      N M
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAM 322

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           +    ++G   E++ L   M+RS  R D+ +     S+ +  K    G+Q+H   +++G 
Sbjct: 323 MVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF 382

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D  + V+N+++D+Y +C+ L  A  IF  +K K  VSW+++I     +    + +  F+E
Sbjct: 383 DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNE 442

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M   G++ D  T  ++L AC  + +LE+   +H   +K GL S + V + +   Y KCG 
Sbjct: 443 MLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 502

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           I+ A +L D  +I  + +++WN+++S ++ + +  +  K +++M    ++PD  TF  +L
Sbjct: 503 IDEAQKLHD--RIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVL 560

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS--MVNLLGRAGHMDEARELVKDMPFK 603
             C N   +E G+ I  ++ +    E   + Y S  +V++  + G M ++  LV +   K
Sbjct: 561 DTCANLATIELGKQIHGQIIKQ---EMLDDEYISSTLVDMYAKCGDMPDSL-LVFEKVEK 616

Query: 604 PDARVWGPLLSACKMH 619
            D   W  ++    +H
Sbjct: 617 RDFVSWNAMICGYALH 632



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 211/435 (48%), Gaps = 4/435 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+L+S   Q G  ++S +LF  M   G   D  T   LL+S   L+ L LG  VH +AV
Sbjct: 117 WNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAV 176

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D+   +AL+ MY K  SL+DA   F  M +++ V W   I+   Q+      LE
Sbjct: 177 KTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLE 236

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L + M R G      +  +A  S + M  +  G+Q+HA+ ++N       V  +++D+Y 
Sbjct: 237 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYA 296

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   L  AR+ F  +   TV + ++M+ G V     +EA+ LF  M    +  D V++  
Sbjct: 297 KANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSG 356

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +  AC         + +H  ++K G +    VN A+   Y KC  +  A  +F  + +  
Sbjct: 357 VFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF--QGMKQ 414

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD ++WN++I+A  ++G +      + +M +  ++PD  T+  +L AC     +E G ++
Sbjct: 415 KDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMV 474

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
             ++ +S G        +++V++  + G +DEA++L  D         W  +LS   ++ 
Sbjct: 475 HDKVIKS-GLGSDAFVASTVVDMYCKCGIIDEAQKL-HDRIGGQQVVSWNAILSGFSLNK 532

Query: 621 ETELAELTAEKLISM 635
           E+E A+    +++ M
Sbjct: 533 ESEEAQKFFSEMLDM 547



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 183/405 (45%), Gaps = 48/405 (11%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +S NT +L+ YS    +  A  LFD M D D V WN ++S Y Q G  +ES++L + M R
Sbjct: 84  VSWNT-MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T    + S S ++ +  G Q+HA  ++ G +  V   ++L+DMY +C  L+ 
Sbjct: 143 RGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDD 202

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A   F  +  +  VSW + I G V ++Q +  L LF EM+  G+ V   +  +   +C  
Sbjct: 203 ALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 262

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  L   + LH +++K   +S   V TAI   YAK   +  A   F    + +  + T N
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF--FGLPNHTVETSN 320

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-------------------- 547
           +M+    + G   +   L+  M +S +R D+++  G+ +A                    
Sbjct: 321 AMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKS 380

Query: 548 ------CVNAGLVE---------EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
                 CVN  +++         E  +IF+ MK+          + +++  L + GH D+
Sbjct: 381 GFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-----DSVSWNAIIAALEQNGHYDD 435

Query: 593 A----RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                 E+++    KPD   +G +L AC      E   +  +K+I
Sbjct: 436 TILHFNEMLR-FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 479


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/675 (30%), Positives = 369/675 (54%), Gaps = 7/675 (1%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + L    Q+HA   +  GL  ++   S L+D Y     L  +   F  +   
Sbjct: 155 LLKSCSALEELSLGVQVHA-LAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER 213

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + +G  +    +  +Y + L ++ +M    +  ++ +Y    RSC+ +    +G ++H
Sbjct: 214 NWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLH 273

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F S   VG A+V+ Y K +   +  +         +++  N+++   V+ G  
Sbjct: 274 AHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETS-NAMMVGLVRAGLG 332

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            ++  LF+ M      FD  +L  +  +  E K    G+ VHC+A+ S F  D+ VN A+
Sbjct: 333 IEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAV 392

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L +Y K  +L +A ++F  M  KD V WN +I+A  Q+G   +++     M+R G + D 
Sbjct: 393 LDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDD 452

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT  + + + + ++++E+G  +H  V+++G      V ++++DMYC+C  ++ A+K+ D 
Sbjct: 453 FTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDR 512

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  + VVSW++++ G+  + +S EA + FSEM   G++ D  T   +L  C N+  +E  
Sbjct: 513 IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELG 572

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K +HG  +K  +     +++ +   YAKCG  +M   L   EK++ +D ++WN+MI  YA
Sbjct: 573 KQIHGQIIKQEMLDDEYISSTLVDMYAKCG--DMPDSLLVFEKVEKRDFVSWNAMICGYA 630

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            HG   +  +++ +M++ +V P+  TF+ +L AC + GL ++G   F  M   Y  EP  
Sbjct: 631 LHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQL 690

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EH+A MV++LGR+    EA + +  MPF+ DA +W  LLS CK+  + E+AEL A  ++ 
Sbjct: 691 EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLL 750

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++P+++  Y+LLSN+YA +GKW  V++ R  L+   LKK PGCSWIE+   +H F   D+
Sbjct: 751 LDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDK 810

Query: 695 SHPQADAIYTILGIL 709
           +HP++  +Y +L  L
Sbjct: 811 AHPRSGELYEMLNDL 825



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 145/556 (26%), Positives = 281/556 (50%), Gaps = 15/556 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++ +Y++ G +S +  +F+ +  P+ + +  ++    + G +++++ ++ +MA + + 
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVS 146

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFEN 185
           P   T+  +++SCS L +   G ++HA  VK G +     G ALV+ Y KC   D     
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
             GM +R +      W + I+  VQN +  +  ELF  M+  G      +  +  RS   
Sbjct: 207 FYGMPERNW----VSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 262

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +  L  GR +H  A+ + F  D  V TA++ +Y+K  SL DA+  F  + +      N M
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAM 322

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           +    ++G   E++ L   M+RS  R D+ +     S+ +  K    G+Q+H   +++G 
Sbjct: 323 MVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF 382

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D  + V+N+++D+Y +C+ L  A  IF  +K K  VSW+++I     +    + +  F+E
Sbjct: 383 DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNE 442

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M   G++ D  T  ++L AC  + +LE+   +H   +K GL S + V + +   Y KCG 
Sbjct: 443 MLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 502

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           I+ A +L D  +I  + +++WN+++S ++ + +  +  K +++M    ++PD  TF  +L
Sbjct: 503 IDEAQKLHD--RIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVL 560

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS--MVNLLGRAGHMDEARELVKDMPFK 603
             C N   +E G+ I  ++ +    E   + Y S  +V++  + G M ++  LV +   K
Sbjct: 561 DTCANLATIELGKQIHGQIIKQ---EMLDDEYISSTLVDMYAKCGDMPDSL-LVFEKVEK 616

Query: 604 PDARVWGPLLSACKMH 619
            D   W  ++    +H
Sbjct: 617 RDFVSWNAMICGYALH 632



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 211/435 (48%), Gaps = 4/435 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+L+S   Q G  ++S +LF  M   G   D  T   LL+S   L+ L LG  VH +AV
Sbjct: 117 WNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAV 176

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D+   +AL+ MY K  SL+DA   F  M +++ V W   I+   Q+      LE
Sbjct: 177 KTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLE 236

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L + M R G      +  +A  S + M  +  G+Q+HA+ ++N       V  +++D+Y 
Sbjct: 237 LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYA 296

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   L  AR+ F  +   TV + ++M+ G V     +EA+ LF  M    +  D V++  
Sbjct: 297 KANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSG 356

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +  AC         + +H  ++K G +    VN A+   Y KC  +  A  +F  + +  
Sbjct: 357 VFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF--QGMKQ 414

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD ++WN++I+A  ++G +      + +M +  ++PD  T+  +L AC     +E G ++
Sbjct: 415 KDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMV 474

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
             ++ +S G        +++V++  + G +DEA++L  D         W  +LS   ++ 
Sbjct: 475 HDKVIKS-GLGSDAFVASTVVDMYCKCGIIDEAQKL-HDRIGGQQVVSWNAILSGFSLNK 532

Query: 621 ETELAELTAEKLISM 635
           E+E A+    +++ M
Sbjct: 533 ESEEAQKFFSEMLDM 547



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 183/405 (45%), Gaps = 48/405 (11%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +S NT +L+ YS    +  A  LFD M D D V WN ++S Y Q G  +ES++L + M R
Sbjct: 84  VSWNT-MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T    + S S ++ +  G Q+HA  ++ G +  V   ++L+DMY +C  L+ 
Sbjct: 143 RGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDD 202

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A   F  +  +  VSW + I G V ++Q +  L LF EM+  G+ V   +  +   +C  
Sbjct: 203 ALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAA 262

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  L   + LH +++K   +S   V TAI   YAK   +  A   F    + +  + T N
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF--FGLPNHTVETSN 320

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-------------------- 547
           +M+    + G   +   L+  M +S +R D+++  G+ +A                    
Sbjct: 321 AMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKS 380

Query: 548 ------CVNAGLVE---------EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
                 CVN  +++         E  +IF+ MK+          + +++  L + GH D+
Sbjct: 381 GFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-----DSVSWNAIIAALEQNGHYDD 435

Query: 593 A----RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                 E+++    KPD   +G +L AC      E   +  +K+I
Sbjct: 436 TILHFNEMLR-FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 479


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/660 (32%), Positives = 371/660 (56%), Gaps = 5/660 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H  +++  G  Q++ + ++LID Y+  G + +++ VF+ +    ++ + TI+   +K 
Sbjct: 58  QLHG-FVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKC 116

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G    +L ++ QM   ++ P       V+ +CS L     G++IHA V++ G +    V 
Sbjct: 117 GRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 176

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           + L++FY KC+      K   Q   K++ S W ++IS  +QN    ++ +LF  M   G 
Sbjct: 177 NVLIDFYTKCNRVKAGRKLFDQMVVKNIIS-WTTMISGYMQNSFDWEAMKLFGEMNRLGW 235

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + D     ++L S   L++LE GR VH   + ++   +  V   L+ MY+K   L DAK 
Sbjct: 236 KPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKK 295

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +FD M++++ + +N MI  Y       E+LEL   M    F   L T ++ +   +++  
Sbjct: 296 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 355

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E  KQ+H  +++ G    +   ++LID+Y +C  +  AR +F+ +  K +V W++M  G
Sbjct: 356 LELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 415

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y  H ++ EAL+L+S ++    + +  T   ++ A  N+ +L H +  H   +K+GL+  
Sbjct: 416 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 475

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   YAKCG IE A ++F+      +D++ WNSMIS +A+HG+  +   ++ +M
Sbjct: 476 PFVTNALVDMYAKCGSIEEARKMFNSSIW--RDVVCWNSMISTHAQHGEAEEALGMFREM 533

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
            +  ++P+ +TF+ +L+AC +AG VE+G   F  M   +G +P  EHYA +V+LLGR+G 
Sbjct: 534 MKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGK 592

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + EA+E ++ MP +P A VW  LLSAC++    EL +  AE  IS +P+++G+Y+LLSNI
Sbjct: 593 LFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNI 652

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +A+ G W  V K+R  +    + K PG SWIE+   V+ F A   +H +AD I ++L IL
Sbjct: 653 FASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDIL 712



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 152/524 (29%), Positives = 277/524 (52%), Gaps = 8/524 (1%)

Query: 104 KNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           K++   G  E+ L+V+  +  +S  +P E     VIR+C+ L     G ++H  VV+ GF
Sbjct: 9   KDMEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGF 68

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           D    VG +L++FY K +G  E  + +  +  +     W ++I+   + G+S  S ELF 
Sbjct: 69  DQDVYVGTSLIDFYSK-NGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFA 127

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR      D   + ++L +   L+ LE G+ +H   +      D+SV   L+  Y+K  
Sbjct: 128 QMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCN 187

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            ++  + LFD+M  K+ + W  MIS Y Q+ F  E+++L   M R G++ D F   + ++
Sbjct: 188 RVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT 247

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           S  +++ +E G+Q+HA  ++   +    V N LIDMY +   L  A+K+FD +  + V+S
Sbjct: 248 SCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVIS 307

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           +++MI+GY + ++  EAL LF EM++       +T +++L    ++ ALE  K +HG  +
Sbjct: 308 YNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII 367

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K G++      +A+   Y+KC  ++ A  +F+E  ++ KDI+ WN+M   Y +H +  + 
Sbjct: 368 KXGVSLDLFAGSALIDVYSKCSYVKDARHVFEE--MNEKDIVVWNAMFFGYTQHLENEEA 425

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYASMV 581
            KLY+ ++ S  +P+  TF  L+TA  N   +  G+    ++ K    + P   +  ++V
Sbjct: 426 LKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALV 483

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++  + G ++EAR++     ++ D   W  ++S    H E E A
Sbjct: 484 DMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEA 526



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 249/483 (51%), Gaps = 14/483 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C   + L+   QIHA Y++  G   ++ + + LID Y     +   +++F+ +  
Sbjct: 143 SVLSACSMLEFLEGGKQIHA-YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVV 201

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + + T++    +     + + ++ +M      P       V+ SC  L     G ++
Sbjct: 202 KNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQV 261

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA  +K   +S + V + L++ Y K +   + +K       +++ S +N++I       K
Sbjct: 262 HAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVIS-YNAMIEGYSSQEK 320

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             ++ ELF  MR+        T ++LL  +  L +LEL + +H + +      DL   +A
Sbjct: 321 LSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSA 380

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ +YSK + ++DA+ +F++M++KD VVWN M   Y Q    +E+L+L   +  S  + +
Sbjct: 381 LIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPN 440

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            FT  A +++ S + ++  G+Q H  +++ G D+   V N+L+DMY +C  +  ARK+F+
Sbjct: 441 EFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFN 500

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE- 452
           S   + VV W+SMI  +  H ++ EAL +F EM  EG++ ++VT + +L AC + G +E 
Sbjct: 501 SSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVED 560

Query: 453 ---HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
              H   + G+ +K G    + V + +     + G +  A E  ++  I+   I+ W S+
Sbjct: 561 GLNHFNSMPGFGIKPGTEHYACVVSLL----GRSGKLFEAKEFIEKMPIEPAAIV-WRSL 615

Query: 510 ISA 512
           +SA
Sbjct: 616 LSA 618


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/671 (31%), Positives = 364/671 (54%), Gaps = 7/671 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NS 96
           +L    + Q   Q+HA  +   G   ++ +++ L+  Y   G +  +++VF+   S  N+
Sbjct: 109 VLKCVPDAQLGAQVHAMAMAT-GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNA 167

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + +  ++    K  +    + V+ +M    + P E  +  V+ +C+   +  +G ++HA 
Sbjct: 168 VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAM 227

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSE 215
           VV++G++      +ALV+ Y+K   G  +   +I  K  D     WN+LIS  V NG   
Sbjct: 228 VVRMGYEKDVFTANALVDMYVKM--GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDH 285

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ EL   M+  G   +   L ++L++     + +LGR +H   + ++   D  +   L+
Sbjct: 286 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 345

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K   L+DA  +FD MS +D ++WN +IS     G   E+  +   + + G   +  
Sbjct: 346 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRT 405

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  A + S ++++     +Q+HA   + G  +   V N LID Y +C  L+ A ++F+  
Sbjct: 406 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 465

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
            +  +++ +SMI      D    A++LF EM  +G+E D   + ++L AC ++ A E  K
Sbjct: 466 SSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 525

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H + +K    S +    A+  +YAKCG IE A   F    +  + +++W++MI   A+
Sbjct: 526 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF--SSLPERGVVSWSAMIGGLAQ 583

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   +  +L+ +M    + P+ IT   +L AC +AGLV+E +  F  MKE +G + ++E
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEE 643

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY+ M++LLGRAG +D+A ELV  MPF+ +A VWG LL A ++H + EL +L AEKL  +
Sbjct: 644 HYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFIL 703

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EPE +G +VLL+N YA++G WN VAK+R  ++D  +KK P  SW+E+   VH F   D+S
Sbjct: 704 EPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKS 763

Query: 696 HPQADAIYTIL 706
           HP    IY+ L
Sbjct: 764 HPMTKEIYSKL 774



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 256/539 (47%), Gaps = 36/539 (6%)

Query: 46  QHLQQIHARYIILHG--LHQNLI-------LSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           Q L +  A   +L G  LH NL+       L ++LI  Y+       +++VF+ I  P  
Sbjct: 9   QQLTRYAAAQALLPGAHLHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCH 68

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + + +++   S  G     +  +  M  + +   E   P V++   C+ D   G ++HA 
Sbjct: 69  VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK---CVPDAQLGAQVHAM 125

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR-----WNSLISLA 208
            +  GF S   V +ALV  Y    GGF    G +   +R F +  S      WN L+S  
Sbjct: 126 AMATGFGSDVFVANALVAMY----GGF----GFMDDARRVFDEAGSERNAVSWNGLMSAY 177

Query: 209 VQNGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           V+N +   + ++F  M   G    EF    ++N    +   ++++ GR VH + V   + 
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS---RNIDAGRQVHAMVVRMGYE 234

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           KD+    AL+ MY K+  ++ A ++F+KM D D V WN +IS    +G    ++ELL+ M
Sbjct: 235 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
             SG   ++F   + + + +     + G+Q+H  +++  +D    +   L+DMY +   L
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           + A K+FD +  + ++ W+++I G     +  EA  +F  ++ EG+ V+  T+  +L + 
Sbjct: 355 DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKST 414

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            ++ A    + +H  + K+G    + V   +  SY KC C+  A  +F+E    S DII 
Sbjct: 415 ASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE--CSSGDIIA 472

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
             SMI+A ++        KL+ +M +  + PD      LL AC +    E+G+ +   +
Sbjct: 473 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 188/390 (48%), Gaps = 20/390 (5%)

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
           +GT+   L      ++L  G  +H   + S F    S+   L+S YSK      A+ +FD
Sbjct: 4   AGTISQQLTRYAAAQALLPGAHLHANLLKSGFLA--SLRNHLISFYSKCRRPCCARRVFD 61

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           ++ D   V W+ +++AY  +G P+ +++    M   G   + F A+  V  +  + + + 
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEF-ALPVV--LKCVPDAQL 118

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMIKGYV 411
           G Q+HA  +  G    V V N+L+ MY     ++ AR++FD   + +  VSW+ ++  YV
Sbjct: 119 GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 178

Query: 412 THDQSLEALRLFSEMKLEGV---EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
            +DQ  +A+++F EM   G+   E  F  ++N      NI A   V   H   +++G   
Sbjct: 179 KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV---HAMVVRMGYEK 235

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
                 A+   Y K G +++A  +F  EK+   D+++WN++IS    +G   +  +L  Q
Sbjct: 236 DVFTANALVDMYVKMGRVDIASVIF--EKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGR 586
           MK S + P++     +L AC  AG  + GR I   M ++       + Y    +V++  +
Sbjct: 294 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA---NADSDDYIGVGLVDMYAK 350

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSAC 616
              +D+A ++   M  + D  +W  L+S C
Sbjct: 351 NHFLDDAMKVFDWMSHR-DLILWNALISGC 379



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 152/341 (44%), Gaps = 39/341 (11%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G  +HAN+L++G  +  S+ N LI  Y +C    CAR++FD +     VSWSS++  Y  
Sbjct: 23  GAHLHANLLKSG--FLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 413 HDQSLEALRLFSEMKLEGV---EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +     A++ F  M+ EGV   E     ++  +P    +GA      +H  +M  G  S 
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD-AQLGA-----QVHAMAMATGFGSD 134

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   Y   G ++ A  +FDE     ++ ++WN ++SAY K+       +++ +M
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFDEAG-SERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
             S ++P    F  ++ AC  +  ++ GR +   M    GYE       ++V++  + G 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQV-HAMVVRMGYEKDVFTANALVDMYVKMGR 252

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN-AGNYVLLSN 648
           +D A  + + MP   D   W  L+S C ++     A    E L+ M+      N  +LS+
Sbjct: 253 VDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRA---IELLLQMKSSGLVPNVFMLSS 308

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           I                     LK   G    ++G+ +H F
Sbjct: 309 I---------------------LKACAGAGAFDLGRQIHGF 328


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/680 (32%), Positives = 365/680 (53%), Gaps = 10/680 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYGTILKNLS 107
            +QIH  YII +    +  L + LI  Y++      +  +F  + +  N + +  ++    
Sbjct: 567  RQIHG-YIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 625

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC--LLDFISGEKIHAQVVKLGFDSF 165
            + G +EK+L +Y     ++      ++     +CS   +LDF  G ++H  V+K+ F   
Sbjct: 626  ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDF--GRQVHCDVIKMNFQDD 683

Query: 166  DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
              V  +L+  Y K  G  E+ K +  +         N++IS  + NG++  +  L+  M+
Sbjct: 684  PYVCTSLLTMYAK-SGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMK 742

Query: 226  MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
                  DS T+ +LL     + S + GR VH   +      ++++ +ALL+MY K  S E
Sbjct: 743  AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 802

Query: 286  DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            DA  +F  M ++D V W  MI+ + Q+   K++L+L   M + G +AD     + +S+  
Sbjct: 803  DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 862

Query: 346  TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
             ++N+E G  +H   ++ G +  V V  SL+DMY +      A  +F S+  K +V+W+S
Sbjct: 863  GLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNS 922

Query: 406  MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            MI  Y  +     ++ L  ++   G  +D V+I  +L A  ++ AL   K LH Y ++L 
Sbjct: 923  MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ 982

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            + S   V  A+   Y KCGC++ A  +F  E +  ++++TWNSMI+ Y  HG+  +  +L
Sbjct: 983  IPSDLQVENALIDMYVKCGCLKYAQLIF--ENMPRRNLVTWNSMIAGYGSHGNCEEAVRL 1040

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            + +MK+S+  PD +TFL L+T+C ++G+VEEG  +F+ M+  YG EP  EHYAS+V+LLG
Sbjct: 1041 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 1100

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            RAG +D+A   ++ MP   D  VW  LL AC+ H   EL EL A+ L+ MEP    NYV 
Sbjct: 1101 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 1160

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            L N+Y     W+  A +R  ++ RGLKK+PGCSWIE+   V  F++ D S  +   IY  
Sbjct: 1161 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKT 1220

Query: 706  LGILELEIMEGRRESSEELK 725
            L  L+   MEG+  S E ++
Sbjct: 1221 LSSLKSN-MEGKGCSYEGIE 1239



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 169/625 (27%), Positives = 309/625 (49%), Gaps = 47/625 (7%)

Query: 28   PH---MTATHSF-SLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
            PH    TA  +F SLL  C    N  H + IHA  I+  GL  +  ++++LI+ Y   GL
Sbjct: 433  PHSALTTAKFTFPSLLKTCASLSNLYHGRTIHAS-IVTMGLQSDPYIATSLINMYVKCGL 491

Query: 81   LSLSQQVFNSIT-----SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
            L  + QVF+ ++     +P+  ++  ++    K+G +E+ L  + +M    + P   +  
Sbjct: 492  LGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLS 551

Query: 136  FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD---------GGFENE 186
             V+  C+ L  +++G +IH  +++  F+    +  AL+  Y  C          G  EN 
Sbjct: 552  IVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENR 611

Query: 187  KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
              ++          WN +I   V+NG  EKS EL+ L + E  +  S +      +    
Sbjct: 612  SNIVA---------WNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHG 662

Query: 247  KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            + L+ GR VHC  +  +F  D  V T+LL+MY+K  S+EDAK +FD++ DK+  + N MI
Sbjct: 663  EVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMI 722

Query: 307  SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
            SA+  +G   ++L L   M       D FT  + +S  S + + ++G+ +HA V++    
Sbjct: 723  SAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQ 782

Query: 367  YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
              V++ ++L+ MY +C     A  +F ++K + VV+W SMI G+  + +  +AL LF  M
Sbjct: 783  SNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAM 842

Query: 427  KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
            + EGV+ D   + +++ A + +  +E    +HG+++K GL S   V  ++   Y+K G  
Sbjct: 843  EKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFA 902

Query: 487  EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
            E A  +F    + +K+++ WNSMIS Y+ +G       L  Q+ Q     D ++   +L 
Sbjct: 903  ESAEMVFSS--MPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLV 960

Query: 547  ACVNAGLVEEGRIIFKEMKESYGYE-----PSQEHYA-SMVNLLGRAGHMDEARELVKDM 600
            A  +   + +G+ +       + Y+     PS      +++++  + G +  A+ + ++M
Sbjct: 961  AVSSVAALLKGKTL-------HAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENM 1013

Query: 601  PFKPDARVWGPLLSACKMHSETELA 625
            P + +   W  +++    H   E A
Sbjct: 1014 P-RRNLVTWNSMIAGYGSHGNCEEA 1037



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 252/523 (48%), Gaps = 21/523 (4%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +K L + G+Y + L ++ +    ++  A+ T+P ++++C+ L +   G  IHA +V +G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK------SRWNSLISLAVQNGKSEK 216
            S   +  +L+  Y+KC  G       +  K  + +      + WN +I    + G  E+
Sbjct: 473 QSDPYIATSLINMYVKC--GLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEE 530

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
               F  M+  G   D  +L  +L     L     GR +H   + + F  D  + TAL+ 
Sbjct: 531 GLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIG 590

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           MYS  +   +A  LF K+ ++  +V WN+MI  + ++G  ++SLEL         +    
Sbjct: 591 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSA 650

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           +   A ++ S  + +++G+Q+H +V++        V  SL+ MY +   +  A+K+FD V
Sbjct: 651 SFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV 710

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             K V   ++MI  ++ + ++ +AL L+++MK     VD  TI ++L  C  +G+ +  +
Sbjct: 711 LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGR 770

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H   +K  + S  ++ +A+   Y KCG  E A  +F   K   +D++ W SMI+ + +
Sbjct: 771 TVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK--ERDVVAWGSMIAGFCQ 828

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL----VEEGRIIFKEMKESYGYE 571
           +  +     L+  M++  V+ D      ++T+ ++AGL    VE G +I        G E
Sbjct: 829 NRRFKDALDLFRAMEKEGVKAD----SDVMTSVISAGLGLENVELGHLIHG-FAIKRGLE 883

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
                  S+V++  + G  + A  +   MP K +   W  ++S
Sbjct: 884 SDVFVACSLVDMYSKFGFAESAEMVFSSMPNK-NLVAWNSMIS 925


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/671 (31%), Positives = 364/671 (54%), Gaps = 7/671 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NS 96
           +L    + Q   Q+HA  +   G   ++ +++ L+  Y   G +  +++VF+   S  N+
Sbjct: 16  VLKCVPDAQLGAQVHAMAMAT-GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNA 74

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + +  ++    K  +    + V+ +M    + P E  +  V+ +C+   +  +G ++HA 
Sbjct: 75  VSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAM 134

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSE 215
           VV++G++      +ALV+ Y+K   G  +   +I  K  D     WN+LIS  V NG   
Sbjct: 135 VVRMGYEKDVFTANALVDMYVKM--GRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDH 192

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ EL   M+  G   +   L ++L++     + +LGR +H   + ++   D  +   L+
Sbjct: 193 RAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLV 252

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K   L+DA  +FD MS +D ++WN +IS     G   E+  +   + + G   +  
Sbjct: 253 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRT 312

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  A + S ++++     +Q+HA   + G  +   V N LID Y +C  L+ A ++F+  
Sbjct: 313 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 372

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
            +  +++ +SMI      D    A++LF EM  +G+E D   + ++L AC ++ A E  K
Sbjct: 373 SSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 432

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H + +K    S +    A+  +YAKCG IE A   F    +  + +++W++MI   A+
Sbjct: 433 QVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF--SSLPERGVVSWSAMIGGLAQ 490

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   +  +L+ +M    + P+ IT   +L AC +AGLV+E +  F  MKE +G + ++E
Sbjct: 491 HGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEE 550

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY+ M++LLGRAG +D+A ELV  MPF+ +A VWG LL A ++H + EL +L AEKL  +
Sbjct: 551 HYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFIL 610

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EPE +G +VLL+N YA++G WN VAK+R  ++D  +KK P  SW+E+   VH F   D+S
Sbjct: 611 EPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKS 670

Query: 696 HPQADAIYTIL 706
           HP    IY+ L
Sbjct: 671 HPMTKEIYSKL 681



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 27/441 (6%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           E   P V++   C+ D   G ++HA  +  GF S   V +ALV  Y    GGF    G +
Sbjct: 10  EFALPVVLK---CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMY----GGF----GFM 58

Query: 191 ---QRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEG---AEFDSGTLINL 239
              +R F +  S      WN L+S  V+N +   + ++F  M   G    EF    ++N 
Sbjct: 59  DDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNA 118

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
              +   ++++ GR VH + V   + KD+    AL+ MY K+  ++ A ++F+KM D D 
Sbjct: 119 CTGS---RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +IS    +G    ++ELL+ M  SG   ++F   + + + +     + G+Q+H  
Sbjct: 176 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGF 235

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +++  +D    +   L+DMY +   L+ A K+FD +  + ++ W+++I G     +  EA
Sbjct: 236 MIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEA 295

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
             +F  ++ EG+ V+  T+  +L +  ++ A    + +H  + K+G    + V   +  S
Sbjct: 296 FSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDS 355

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KC C+  A  +F+E    S DII   SMI+A ++        KL+ +M +  + PD  
Sbjct: 356 YWKCSCLSDAIRVFEE--CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 413

Query: 540 TFLGLLTACVNAGLVEEGRII 560
               LL AC +    E+G+ +
Sbjct: 414 VLSSLLNACASLSAYEQGKQV 434



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 230/485 (47%), Gaps = 44/485 (9%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           MR EG   +   L  +L+    +   +LG  VH +A+ + F  D+ V  AL++MY     
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 284 LEDAKMLFDKM-SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           ++DA+ +FD+  S+++ V WN ++SAY ++    +++++   MV SG +   F     V+
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +  +NI+ G+Q+HA V+R G +  V   N+L+DMY +   ++ A  IF+ +    VVS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+++I G V +     A+ L  +MK  G+  +   + +IL AC   GA +  + +HG+ +
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K   +S   +   +   YAK   ++ A ++FD   +  +D+I WN++IS  +  G   + 
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDW--MSHRDLILWNALISGCSHGGRHDEA 295

Query: 523 FKLYTQMKQSDVRPDLITFLGLL--TACVNA--------GLVEEGRIIFKE-----MKES 567
           F ++  +++  +  +  T   +L  TA + A         L E+   IF       + +S
Sbjct: 296 FSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDS 355

Query: 568 YG-----------YEPSQE----HYASMVNLLGRAGHMDEARELVKDM---PFKPDARVW 609
           Y            +E           SM+  L +  H + A +L  +M     +PD  V 
Sbjct: 356 YWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 415

Query: 610 GPLLSACKMHSETELAELTAEKLIS---MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
             LL+AC   S  E  +     LI    M    AGN ++ +  YA  G         + L
Sbjct: 416 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSL 473

Query: 667 RDRGL 671
            +RG+
Sbjct: 474 PERGV 478


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/680 (32%), Positives = 365/680 (53%), Gaps = 10/680 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYGTILKNLS 107
           +QIH  YII +    +  L + LI  Y++      +  +F  + +  N + +  ++    
Sbjct: 162 RQIHG-YIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 220

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC--LLDFISGEKIHAQVVKLGFDSF 165
           + G +EK+L +Y     ++      ++     +CS   +LDF  G ++H  V+K+ F   
Sbjct: 221 ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDF--GRQVHCDVIKMNFQDD 278

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V  +L+  Y K  G  E+ K +  +         N++IS  + NG++  +  L+  M+
Sbjct: 279 PYVCTSLLTMYAK-SGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMK 337

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
                 DS T+ +LL     + S + GR VH   +      ++++ +ALL+MY K  S E
Sbjct: 338 AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 397

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DA  +F  M ++D V W  MI+ + Q+   K++L+L   M + G +AD     + +S+  
Sbjct: 398 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 457

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            ++N+E G  +H   ++ G +  V V  SL+DMY +      A  +F S+  K +V+W+S
Sbjct: 458 GLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNS 517

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI  Y  +     ++ L  ++   G  +D V+I  +L A  ++ AL   K LH Y ++L 
Sbjct: 518 MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ 577

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           + S   V  A+   Y KCGC++ A  +F  E +  ++++TWNSMI+ Y  HG+  +  +L
Sbjct: 578 IPSDLQVENALIDMYVKCGCLKYAQLIF--ENMPRRNLVTWNSMIAGYGSHGNCEEAVRL 635

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +MK+S+  PD +TFL L+T+C ++G+VEEG  +F+ M+  YG EP  EHYAS+V+LLG
Sbjct: 636 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 695

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +D+A   ++ MP   D  VW  LL AC+ H   EL EL A+ L+ MEP    NYV 
Sbjct: 696 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 755

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           L N+Y     W+  A +R  ++ RGLKK+PGCSWIE+   V  F++ D S  +   IY  
Sbjct: 756 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKT 815

Query: 706 LGILELEIMEGRRESSEELK 725
           L  L+   MEG+  S E ++
Sbjct: 816 LSSLKSN-MEGKGCSYEGIE 834



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 167/625 (26%), Positives = 302/625 (48%), Gaps = 66/625 (10%)

Query: 28  PH---MTATHSF-SLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           PH    TA  +F SLL  C    N  H + IHA  I+  GL  +  ++++LI+ Y   GL
Sbjct: 47  PHSALTTAKFTFPSLLKTCASLSNLYHGRTIHAS-IVTMGLQSDPYIATSLINMYVKCGL 105

Query: 81  LSLSQQVFNSI-----TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           L  + QVF+ +     ++P+  ++  ++    K+G +E+ L  + +M   S Y       
Sbjct: 106 LGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELSWY------- 158

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD---------GGFENE 186
                       ++G +IH  +++  F+    +  AL+  Y  C          G  EN 
Sbjct: 159 ------------MAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENR 206

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
             ++          WN +I   V+NG  EKS EL+ L + E  +  S +      +    
Sbjct: 207 SNIVA---------WNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHG 257

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           + L+ GR VHC  +  +F  D  V T+LL+MY+K  S+EDAK +FD++ DK+  + N MI
Sbjct: 258 EVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMI 317

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           SA+  +G   ++L L   M       D FT  + +S  S + + ++G+ +HA V++    
Sbjct: 318 SAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQ 377

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V++ ++L+ MY +C     A  +F ++K + VV+W SMI G+  + +  +AL LF  M
Sbjct: 378 SNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAM 437

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           + EGV+ D   + +++ A + +  +E    +HG+++K GL S   V  ++   Y+K G  
Sbjct: 438 EKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFA 497

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           E A  +F    + +K+++ WNSMIS Y+ +G       L  Q+ Q     D ++   +L 
Sbjct: 498 ESAEMVFS--SMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLV 555

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYE-----PSQEHYA-SMVNLLGRAGHMDEARELVKDM 600
           A  +   + +G+ +       + Y+     PS      +++++  + G +  A+ + ++M
Sbjct: 556 AVSSVAALLKGKTL-------HAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENM 608

Query: 601 PFKPDARVWGPLLSACKMHSETELA 625
           P + +   W  +++    H   E A
Sbjct: 609 P-RRNLVTWNSMIAGYGSHGNCEEA 632



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/523 (24%), Positives = 247/523 (47%), Gaps = 40/523 (7%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +K L + G+Y + L ++ +    ++  A+ T+P ++++C+ L +   G  IHA +V +G 
Sbjct: 27  IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 86

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK------SRWNSLISLAVQNGKSEK 216
            S   +  +L+  Y+KC  G       +  K  + +      + WN +I    + G  E+
Sbjct: 87  QSDPYIATSLINMYVKC--GLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEE 144

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
               F  M+                   EL     GR +H   + + F  D  + TAL+ 
Sbjct: 145 GLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRNMFEGDPYLETALIG 185

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           MYS  +   +A  LF K+ ++  +V WN+MI  + ++G  ++SLEL         +    
Sbjct: 186 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSA 245

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           +   A ++ S  + +++G+Q+H +V++        V  SL+ MY +   +  A+K+FD V
Sbjct: 246 SFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV 305

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             K V   ++MI  ++ + ++ +AL L+++MK     VD  TI ++L  C  +G+ +  +
Sbjct: 306 LDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGR 365

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H   +K  + S  ++ +A+   Y KCG  E A  +F   K   +D++ W SMI+ + +
Sbjct: 366 TVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK--ERDVVAWGSMIAGFCQ 423

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL----VEEGRIIFKEMKESYGYE 571
           +  +     L+  M++  V+ D      ++T+ ++AGL    VE G +I        G E
Sbjct: 424 NRRFKDALDLFRAMEKEGVKAD----SDVMTSVISAGLGLENVELGHLIHG-FAIKRGLE 478

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
                  S+V++  + G  + A  +   MP K +   W  ++S
Sbjct: 479 SDVFVACSLVDMYSKFGFAESAEMVFSSMPNK-NLVAWNSMIS 520



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 141/319 (44%), Gaps = 29/319 (9%)

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N  I A  Q G   ++LEL      S      FT  + + + +++ N+  G+ +HA+++ 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-----KTKTVVSWSSMIKGYVTHDQSL 417
            G      +  SLI+MY +C  L  A ++FD +         +  W+ +I GY  +    
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           E L  F  M+                    +      + +HGY ++        + TA+ 
Sbjct: 144 EGLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRNMFEGDPYLETALI 184

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y+ C     A  LF + + +  +I+ WN MI  + ++G W +  +LY+  K  + +  
Sbjct: 185 GMYSSCSRPMEAWSLFGKLE-NRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLV 243

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
             +F G  TAC +  +++ GR +  + +K ++  +P      S++ +  ++G +++A++ 
Sbjct: 244 SASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYV--CTSLLTMYAKSGSVEDAKK- 300

Query: 597 VKDMPFKPDARVWGPLLSA 615
           V D     +  +   ++SA
Sbjct: 301 VFDQVLDKEVELRNAMISA 319



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           +RK +   +T+   S +S IK  V   +  +AL L S+     +     T  ++L  C +
Sbjct: 8   SRKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCAS 67

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD---EEKIDSKDII 504
           +  L H + +H   + +GL S   + T++   Y KCG +  A ++FD   E +  + DI 
Sbjct: 68  LSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDIT 127

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQ 531
            WN +I  Y K+G + +    + +M++
Sbjct: 128 VWNPVIDGYFKYGHFEEGLAQFCRMQE 154


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/665 (33%), Positives = 358/665 (53%), Gaps = 22/665 (3%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANL--GLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           H + I L G   ++  ++N++  Y     G L+ +  +F+ ++  +++ + T++      
Sbjct: 22  HCQTIKL-GRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNS 80

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIR--SCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           G       +YK M    + P   T+  +++  +C+C LD   G+++H+ +VK+G++    
Sbjct: 81  GSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDV--GQQVHSLIVKMGYEEHVY 138

Query: 168 VGDALVEFYIKCD---GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            G AL++ Y KC+     F   K + +R        WN+LI+  V  G  + +F L + M
Sbjct: 139 AGSALLDMYAKCERVRDAFMVFKCIPRRN----SVSWNALIAGFVLEGDHDTAFWLLRCM 194

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
             EG   D GT   LL    E K  +L   +HC  +      D +V  A ++ YS+  SL
Sbjct: 195 EEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSL 254

Query: 285 EDAKMLFD-KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           EDA+ +FD  +  +D V WN M++A+      + + +L + M + GF  D++T    +S+
Sbjct: 255 EDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISA 314

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC--EDLNCARKIFDSVKTKTVV 401
            S   N   GK +H  V++ G +  V + N++I MY E     +  A  +F S+++K  V
Sbjct: 315 CSHKDN---GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRV 371

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+S++ G+     S  AL+LF  M+   V++D      +L +C ++  L+  + +H  +
Sbjct: 372 SWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLT 431

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K G  S   V +++   Y+KCG IE A + F++   DS   ITWNS++ AYA+HG    
Sbjct: 432 VKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSS--ITWNSIMFAYAQHGQGDV 489

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ QM+   V+ D ITF+  LTAC + GLVE+GR + K M   YG  P  EHYA  V
Sbjct: 490 ALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAV 549

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +L GRAG++DEA+ L++ MPF PDA VW  LL AC+   + ELA   A  L+ +EPE   
Sbjct: 550 DLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHC 609

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            YV+LSN+Y    +W+  A M   +R+R +KK PG SWIE+   VH F A D+ H   + 
Sbjct: 610 TYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDRCHSHFEE 669

Query: 702 IYTIL 706
           IY IL
Sbjct: 670 IYQIL 674



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 234/479 (48%), Gaps = 20/479 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+H+  I+  G  +++   S L+D YA    +  +  VF  I   NS+ +  ++     
Sbjct: 122 QQVHS-LIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVL 180

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD----FISGEKIHAQVVKLGFDS 164
            G+++    + + M  + +   + T+  ++     LLD    +    ++H +++K G   
Sbjct: 181 EGDHDTAFWLLRCMEEEGVRLDDGTFSPLLT----LLDEKKFYKLTMQLHCKIIKHGVQF 236

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFK 222
            + V +A +  Y +C G  E+ + +       +DL + WNS+++  + + + E +F+LF 
Sbjct: 237 DNTVCNATITSYSQC-GSLEDAERVFDGAVGSRDLVT-WNSMLAAFLAHDRKETAFKLFL 294

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY--SK 280
            M+  G E D  T   ++ +     +   G+ +H + +     + + +  A+++MY  S 
Sbjct: 295 DMQQFGFEPDIYTYTTIISACSHKDN---GKSLHGLVIKRGLEQLVPICNAVIAMYLESS 351

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             S+EDA  +F  M  KDRV WN +++ + Q+G  + +L+L + M  +    D +   A 
Sbjct: 352 SNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAV 411

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + S S +  ++ G+Q+H   +++G +    V +SLI MY +C  +  ARK F+     + 
Sbjct: 412 LRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSS 471

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHG 459
           ++W+S++  Y  H Q   AL LF +M+ + V++D +T +  L AC +IG +E  +Y L  
Sbjct: 472 ITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKS 531

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +   G++            + + G ++ A  L +    D  D + W +++ A    GD
Sbjct: 532 MASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFD-PDAMVWKTLLGACRACGD 589


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/671 (32%), Positives = 381/671 (56%), Gaps = 12/671 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + +   GL  ++ + ++L+D Y     ++  ++VF+ +   N + + ++L   S 
Sbjct: 113 RQVHCQCVKF-GLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G Y     ++ QM  + + P   T   VI +         G ++HA VVK GF+    V
Sbjct: 172 NGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPV 231

Query: 169 GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            ++L+  Y +  G   + + +  + + +D  + WNS+I+  V+NG+  + FE+F  M++ 
Sbjct: 232 FNSLISLYSRL-GMLRDARDVFDKMEIRDWVT-WNSMIAGYVRNGQDLEVFEIFNKMQLA 289

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G +    T  ++++S   L+ L L +++ C A+ S F  D  V TAL+   SK   ++DA
Sbjct: 290 GVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDA 349

Query: 288 KMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
             LF  M + K+ V W  MIS   Q+G   +++ L   M R G + + FT     S+I T
Sbjct: 350 LSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT----YSAILT 405

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +    +  +MHA V++   +   SV  +L+D Y +  +   A K+F+ ++ K +++WS+M
Sbjct: 406 VHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAM 465

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN-IGALEHVKYLHGYSMKLG 465
           + GY    ++ EA +LF ++  EG++ +  T  +++ AC +   A E  K  H Y++K+ 
Sbjct: 466 LAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMR 525

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           LN+   V++A+   YAK G I+ A E+F  +K   +D+++WNSMIS Y++HG   +  ++
Sbjct: 526 LNNALCVSSALVTMYAKRGNIDSAHEVFKRQK--ERDLVSWNSMISGYSQHGQAKKALEV 583

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M++ ++  D +TF+G++TAC +AGLVE+G+  F  M   +   P+ +HY+ M++L  
Sbjct: 584 FDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYS 643

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +++A  ++ +MPF P A VW  LL A ++H   EL EL AEKLIS++PE++  YVL
Sbjct: 644 RAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVL 703

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSN+YAAAG W     +R  +  R +KK PG SWIE+    + F A D +HP ++ IY+ 
Sbjct: 704 LSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSK 763

Query: 706 LGILELEIMEG 716
           L  L + + + 
Sbjct: 764 LSELSIRLKDA 774



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 145/550 (26%), Positives = 270/550 (49%), Gaps = 19/550 (3%)

Query: 83  LSQQVFNSITSPNSLL--YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           ++  +F+ I    + L  +  +L + S+  + ++ L ++  +   S+ P E T   V   
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNI 102

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+  LD   G ++H Q VK G      VG +LV+ Y+K +   +      +R F ++  R
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDG-----RRVFDEMGER 157

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               W SL++    NG     +ELF  M+ EG   +  T+  ++ + V    + +G  VH
Sbjct: 158 NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVH 217

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + V   F + + V  +L+S+YS+L  L DA+ +FDKM  +D V WN MI+ Y ++G   
Sbjct: 218 AMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDL 277

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E  E+   M  +G +    T  + + S ++++ +   K M    L++G      V  +L+
Sbjct: 278 EVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALM 337

Query: 377 DMYCECEDLNCARKIFDSVKT-KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
               +C++++ A  +F  ++  K VVSW++MI G + +  + +A+ LFS+M+ EGV+ + 
Sbjct: 338 VALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNH 397

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   IL     +     V  +H   +K      SSV TA+  +Y K G    A ++F  
Sbjct: 398 FTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF-- 451

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           E I++KD++ W++M++ YA+ G+  +  KL+ Q+ +  ++P+  TF  ++ AC +     
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           E    F           +    +++V +  + G++D A E+ K    + D   W  ++S 
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISG 570

Query: 616 CKMHSETELA 625
              H + + A
Sbjct: 571 YSQHGQAKKA 580



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 221/435 (50%), Gaps = 13/435 (2%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL---INLLRSTVELKSLELGRIVHCV 258
           N L+    ++ +++++  LF  +     + D  TL    N+   +++ K   LGR VHC 
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGK---LGRQVHCQ 118

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            V       +SV T+L+ MY K  ++ D + +FD+M +++ V W  +++ Y  +G     
Sbjct: 119 CVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYV 178

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
            EL   M   G   + +T    ++++     +  G Q+HA V+++G +  + V NSLI +
Sbjct: 179 WELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISL 238

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y     L  AR +FD ++ +  V+W+SMI GYV + Q LE   +F++M+L GV+   +T 
Sbjct: 239 YSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTF 298

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +++ +C ++  L  VK +   ++K G  +   V TA+ ++ +KC  ++ A  LF   + 
Sbjct: 299 ASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLME- 357

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + K++++W +MIS   ++G   Q   L++QM++  V+P+  T+  +LT      + E   
Sbjct: 358 EGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHA 417

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            + K       YE S     ++++   + G+  +A ++ + +  K D   W  +L+    
Sbjct: 418 EVIKT-----NYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAMLAGYAQ 471

Query: 619 HSETELAELTAEKLI 633
             ETE A     +LI
Sbjct: 472 TGETEEAAKLFHQLI 486


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/673 (32%), Positives = 366/673 (54%), Gaps = 7/673 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C   + L   +Q+H   +++ G   +  ++++L+  YA  G    ++ +F++I  
Sbjct: 15  SVLKACTVTKDLVLGKQVHG-IVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPD 73

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  +         + + + ++  M L  + P E +   +I  C+ L D + G KI
Sbjct: 74  RSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKI 133

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  ++KLG+DS     +ALV+ Y K  G  E+   +     K     WN++I+  V +  
Sbjct: 134 HGYLIKLGYDSDAFSANALVDMYAKV-GILEDASSVFDEIAKPDIVSWNAIIAGCVLHEY 192

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             ++ EL + M   G   +  TL + L++   +   ELGR +H   +  D   D  +   
Sbjct: 193 HHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVG 252

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK  S++DA+++F  M ++D + WN +IS + Q+   +E+  L   M   G   +
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFN 312

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T    + SI+ ++     +Q+HA  L++G ++   V NSLID Y +C  +  A ++F+
Sbjct: 313 QTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFE 372

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
                 +V ++S++  Y    Q  EALRL+ EM+  G++ D     ++L AC ++ A E 
Sbjct: 373 ESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQ 432

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H + +K G  S      ++   YAKCG IE A   F   +I  + I++W++MI   
Sbjct: 433 GKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAF--SRIPVRGIVSWSAMIGGL 490

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +  +L+ QM +  V P+ IT + +L AC +AGLV E +  F  MK  +G EP 
Sbjct: 491 AQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPM 550

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
           QEHYA M++LLGRAG ++ A ELV  MPF+ +A VWG LL A ++H   +L E  AE L+
Sbjct: 551 QEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLL 610

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
           ++EPE +G +VLL+NIYA+ G W+ VA++R  ++D  +KK PG SW+E+   V+ F   D
Sbjct: 611 ALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGD 670

Query: 694 QSHPQADAIYTIL 706
           +SH ++  IY  L
Sbjct: 671 RSHSRSTEIYAKL 683



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 143/540 (26%), Positives = 272/540 (50%), Gaps = 15/540 (2%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           E  +P V+++C+   D + G+++H  VV  GFDS + V ++LV  Y KC GGF + + + 
Sbjct: 10  EFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKC-GGFGDARSLF 68

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
                     WN+L S  V +    ++  LF  M + G   +  +L +++     L+   
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            GR +H   +   +  D     AL+ MY+K+  LEDA  +FD+++  D V WN +I+   
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR--NGSDYQ 368
              +   +LELL  M +SG   ++FT  +A+ + + M   E G+Q+H+++++   GSD  
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           + V   LIDMY +C  ++ AR +F  +  + +++W+++I G+  +++  EA  LF  M  
Sbjct: 249 LGV--GLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           EG+  +  T+  +L +   + A    + +H  S+K G    + V  ++  +Y KCG +E 
Sbjct: 307 EGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVED 366

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A  +F+E  I   D++ + S+++AYA+ G   +  +LY +M+   ++PD      LL AC
Sbjct: 367 ATRVFEESPI--VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC 424

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +    E+G+ +   + + +G+        S+VN+  + G +++A      +P +     
Sbjct: 425 ASLSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS- 482

Query: 609 WGPLLSACKMHS-ETELAELTAEKL-ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
           W  ++     H    E  +L  + L + + P    N++ L ++  A      VA+ + + 
Sbjct: 483 WSAMIGGLAQHGYGKEALQLFKQMLKVGVPP----NHITLVSVLCACNHAGLVAEAKHYF 538



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 213/468 (45%), Gaps = 42/468 (8%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M + G + +     ++L++    K L LG+ VH + VV+ F  D  V  +L+ +Y+K   
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
             DA+ LFD + D+  V WN + S Y  S    E++ L   MV SG R + F+  + ++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +++   G+++H  +++ G D      N+L+DMY +   L  A  +FD +    +VSW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I G V H+    AL L  EM   G+  +  T+ + L AC  +   E  + LH   +K
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
           + + S S +   +   Y+KC  ++ A  +F  + +  +D+I WN++IS ++++ +  +  
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVF--KLMPERDMIAWNAVISGHSQNEEDEEAA 298

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+  M    +  +  T   +L +          R I     +S G+E       S+++ 
Sbjct: 299 SLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKS-GFEFDNYVVNSLIDT 357

Query: 584 LGRAGHMDEARELVKDMP----------------------------------FKPDARVW 609
            G+ GH+++A  + ++ P                                   KPD+ V 
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417

Query: 610 GPLLSACKMHSETELAELTAEKLIS---MEPENAGNYVLLSNIYAAAG 654
             LL+AC   S  E  +     ++    M    AGN   L N+YA  G
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNS--LVNMYAKCG 463


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/752 (30%), Positives = 381/752 (50%), Gaps = 80/752 (10%)

Query: 6   PPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNL 65
           PP  + ++ H        +  RPH        LL  C N +    IHA  I  + +H   
Sbjct: 21  PPTLNPKTSH--------SVLRPHWI----IDLLKSCSNIREFSPIHAHLITANLIHDPE 68

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           I +S ++    ++  L  + Q+ +    P S+++ T+L+N  K G  ++ L  Y  M  Q
Sbjct: 69  I-TSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQ 127

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            +     T+ F+I +C    D   G ++H +++K GF     + + L+  Y KC    E 
Sbjct: 128 GVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEV 187

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            +   +   +D+ S WN++IS  V  G   ++ +LF  M + G   D  T+++L+ +  +
Sbjct: 188 CQLFEKMTHRDVIS-WNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAK 246

Query: 246 LKSLELGRIVH----------------CVAVVSDFCK-----------------DLSVNT 272
           LK LE+G+ +H                C+  +   C                  D+ + T
Sbjct: 247 LKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+S Y K   ++ A+ LFDKM+++  V W  M+S Y Q G+  ESLEL   M       
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIP 366

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC---------- 382
           D    +  +S+   +++ + G+ +HA ++  G      + N+L+D+Y +C          
Sbjct: 367 DEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTF 426

Query: 383 EDLNC---------------------ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           E L C                     AR  F+ +  K +VSW++M+  YV HD   E+  
Sbjct: 427 EQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFE 486

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           +F +M+   V+ D  T+I++L +C  +GAL H  +++ Y  K  +   + + TA+   Y 
Sbjct: 487 IFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYG 546

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCGC+EMA E+F +  I  K++  W +M++AYA  G   +   LY +M++  V+PD +TF
Sbjct: 547 KCGCVEMAYEIFTQ--IIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTF 604

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + LL AC + GLV+EG   F +++  Y   P+  HY  MV+LLGR GH++E  + ++ MP
Sbjct: 605 IALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMP 664

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +PD  +W  L+ AC+ H   ELAE   ++LI ++P N G +VLLSNIYA AG+W+ V+K
Sbjct: 665 IEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSK 724

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
           +RT L + G+ K PG + IE   +VHEF A++
Sbjct: 725 VRTKLHETGVPKQPGFTMIEQNGVVHEFVASN 756


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/667 (32%), Positives = 364/667 (54%), Gaps = 5/667 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q IHA ++   G   +    +NL++ Y     L  +Q VF+ +   N++ + T++K   +
Sbjct: 98  QAIHA-FLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQ 156

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             + E    + ++M        E T   ++++C  L + + GE+IH  V+K GFD    V
Sbjct: 157 VNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFV 216

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G +L+  Y +C      EK      +KD++   N +IS   + G  EK+  +F  +   G
Sbjct: 217 GTSLISMYSRCGDLGAAEKVYSNLAYKDVRC-LNFMISEYGKAGCGEKAIGVFLHLLGSG 275

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            E +  T  N++ +      +E+ R++H + +      ++SV  A++S+Y K   LE+A+
Sbjct: 276 LEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAE 335

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
             F  M +++ V W  ++S Y ++G  K++LE    ++  G   D       +   S  K
Sbjct: 336 KSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECK 395

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N+  G Q+H  V++ G  + VSV  +LID+Y +C  L  AR +F S+  K +VS+++++ 
Sbjct: 396 NLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILS 455

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY+  D+  +A+ LFS+++L  ++ D VT   +L    +   L   K LH Y +K G  +
Sbjct: 456 GYIGADEE-DAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEA 514

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             SV  A+   YAKCG I  A +LF    ++  D I+WN++ISAYA HG   +   L+ +
Sbjct: 515 NPSVGNAVITMYAKCGSIGDACQLF--YSMNYLDSISWNAVISAYALHGQGRKALILFEE 572

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK+ +  PD IT L +L AC  +GL+EEG  +F +M+  YG +P  EH+A MV+LLGRAG
Sbjct: 573 MKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAG 632

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
           ++ EA   +   PF     +W  L+  CK+H +    ++ ++ L+ + PE AG+Y+L+SN
Sbjct: 633 YLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSN 692

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YA  G  N  A++RT + D  + K  G SWIEI   VH+F A+D+ HP++  IY  L +
Sbjct: 693 LYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDKDHPESKEIYAKLDL 752

Query: 709 LELEIME 715
           L+ E+ +
Sbjct: 753 LKSEMKQ 759



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 256/495 (51%), Gaps = 22/495 (4%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
           D + G+ IHA + KLG+ +    G+ LV  Y     G  N+ G  Q  F ++  R    W
Sbjct: 93  DLMLGQAIHAFLAKLGYQNDAFRGNNLVNLY-----GKFNKLGDAQSVFDEMLVRNTITW 147

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
            +LI   +Q    E  F + + M   G EF+  T   +L++   L++L  G  +H   + 
Sbjct: 148 TTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIK 207

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
             F +D+ V T+L+SMYS+   L  A+ ++  ++ KD    N MIS Y ++G  ++++ +
Sbjct: 208 RGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGV 267

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            + ++ SG   + +T    +S+ +   ++E  + +H   ++ G   ++SV N+++ +Y +
Sbjct: 268 FLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVK 327

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD---FVTI 438
              L  A K F  +  + +VSW++++ GYV +    +AL  FS++   GV  D   F T+
Sbjct: 328 HGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATL 387

Query: 439 INILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           ++    C N+G  L+    +HG+ +KLG     SV TA+   YAKC  +  A  +F    
Sbjct: 388 LDGCSECKNLGLGLQ----IHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVF--HS 441

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  K+I+++N+++S Y    D      L++Q++ +D++PD +TF  LL+   +   + +G
Sbjct: 442 LLDKNIVSFNAILSGYIG-ADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKG 500

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           + +   + ++ G+E +     +++ +  + G + +A +L   M +  D+  W  ++SA  
Sbjct: 501 KCLHAYIIKT-GFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYL-DSISWNAVISAYA 558

Query: 618 MHSETELAELTAEKL 632
           +H +   A +  E++
Sbjct: 559 LHGQGRKALILFEEM 573



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 2/310 (0%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           LL+ ++    L LG+ +H       +  D      L+++Y K   L DA+ +FD+M  ++
Sbjct: 84  LLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRN 143

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            + W  +I  + Q    +    +   M   G   +  T    + +  +++N+  G+Q+H 
Sbjct: 144 TITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHG 203

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            V++ G D  V V  SLI MY  C DL  A K++ ++  K V   + MI  Y       +
Sbjct: 204 FVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEK 263

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           A+ +F  +   G+E +  T  N++ AC     +E ++ LHG  +K G     SV  AI  
Sbjct: 264 AIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVS 323

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y K G +E A + F    +  +++++W +++S Y K+G+  +  + ++Q+ +  V  D 
Sbjct: 324 VYVKHGMLEEAEKSFC--GMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDS 381

Query: 539 ITFLGLLTAC 548
             F  LL  C
Sbjct: 382 CCFATLLDGC 391


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 340/601 (56%), Gaps = 6/601 (0%)

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           ++LL++++M      P   T+PFV ++C+ L D    E +HA ++K  F S   VG A V
Sbjct: 35  ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 94

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
           + ++KC+   +    + +R  +   + WN+++S   Q+G ++K+F LF+ MR+     DS
Sbjct: 95  DMFVKCNS-VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T++ L++S    KSL+L   +H V +       ++V    +S Y K   L+ AK++F+ 
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213

Query: 294 MSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           +   DR V  WN M  AY   G   ++  L   M+R  F+ DL T I   +S    + + 
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            G+ +H++ +  G+D  +   N+ I MY + ED   AR +FD + ++T VSW+ MI GY 
Sbjct: 274 QGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYA 333

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 EAL LF  M   G + D VT+++++  C   G+LE  K++   +   G    + 
Sbjct: 334 EKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNV 393

Query: 472 -VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            +  A+   Y+KCG I  A ++FD      K ++TW +MI+ YA +G + +  KL+++M 
Sbjct: 394 MICNALIDMYSKCGSIHEARDIFDNTP--EKTVVTWTTMIAGYALNGIFLEALKLFSKMI 451

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
             D +P+ ITFL +L AC ++G +E+G   F  MK+ Y   P  +HY+ MV+LLGR G +
Sbjct: 452 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 511

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           +EA EL+++M  KPDA +WG LL+ACK+H   ++AE  AE L ++EP+ A  YV ++NIY
Sbjct: 512 EEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIY 571

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           AAAG W+G A++R+ ++ R +KK PG S I++    H F   +  H + + IY  L  L 
Sbjct: 572 AAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGLS 631

Query: 711 L 711
           L
Sbjct: 632 L 632



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 211/408 (51%), Gaps = 10/408 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN  I  AV      +S  LF+ M+  G E ++ T   + ++   L  +    +VH   +
Sbjct: 20  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S F  D+ V TA + M+ K  S++ A  +F++M ++D   WN M+S + QSG   ++  
Sbjct: 80  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 139

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M  +    D  T +  + S S  K+++  + MHA  +R G D QV+V N+ I  Y 
Sbjct: 140 LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 199

Query: 381 ECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           +C DL+ A+ +F+++    +TVVSW+SM K Y    ++ +A  L+  M  E  + D  T 
Sbjct: 200 KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 259

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFIS-YAKCGCIEMAGELFDEE 496
           IN+  +C N   L   + +H +++ LG +  + ++NT  FIS Y+K      A  LFD  
Sbjct: 260 INLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINT--FISMYSKSEDTCSARLLFD-- 315

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            + S+  ++W  MIS YA+ GD  +   L+  M +S  +PDL+T L L++ C   G +E 
Sbjct: 316 IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLET 375

Query: 557 GRIIFKEMKESYGYEPSQEHYA-SMVNLLGRAGHMDEARELVKDMPFK 603
           G+ I     + YG +        +++++  + G + EAR++  + P K
Sbjct: 376 GKWI-DARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK 422



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 157/355 (44%), Gaps = 19/355 (5%)

Query: 12  QSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQH------LQQIHARYIILHGLHQNL 65
           QSGH         + R +     S +++ L ++         L+ +HA  I L G+   +
Sbjct: 130 QSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRL-GVDVQV 188

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL--YGTILKNLSKFGEYEKTLLVYKQMA 123
            +++  I +Y   G L  ++ VF +I   +  +  + ++ K  S FGE      +Y  M 
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            +   P   T+  +  SC        G  IH+  + LG D   +  +  +  Y K +   
Sbjct: 249 REEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE--- 305

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
             +    +  F  + SR    W  +IS   + G  +++  LF  M   G + D  TL++L
Sbjct: 306 --DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSL 363

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +    +  SLE G+ +   A +    +D + +  AL+ MYSK  S+ +A+ +FD   +K 
Sbjct: 364 ISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKT 423

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
            V W  MI+ Y  +G   E+L+L   M+   ++ +  T +A + + +   ++E G
Sbjct: 424 VVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKG 478



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R+++      +V +W+  I+  V  +  +E+L LF EMK  G E +  T   +  AC  +
Sbjct: 6   RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             +   + +H + +K    S   V TA    + KC  ++ A ++F  E++  +D  TWN+
Sbjct: 66  ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVF--ERMPERDATTWNA 123

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           M+S + + G   + F L+ +M+ +++ PD +T + L+
Sbjct: 124 MLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLI 160


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/673 (31%), Positives = 365/673 (54%), Gaps = 7/673 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C   + +   +Q+H   + L  L  N+ + + LI+ YA LG +  +  VF+++  
Sbjct: 125 SVLRACTQSKAVSLGEQVHGIAVKLD-LDANVYVGTALINLYAKLGCMDEAMLVFHALPV 183

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
              + + T++   ++ G     L ++ +M ++ + P        + +CS L     G +I
Sbjct: 184 RTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQI 243

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H    +   ++   V + L++ Y KC       K     ++++L S W ++IS  +QN  
Sbjct: 244 HGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVS-WTTMISGYMQNSF 302

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           + ++  +F  M   G + D     ++L S   L ++  GR +H   + +D   D  V  A
Sbjct: 303 NAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNA 362

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MY+K   L +A+ +FD +++ D + +N MI  Y ++    E++ +   M     R  
Sbjct: 363 LIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPS 422

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
           L T ++ +   S+   IE  KQ+H  ++++G+   +   ++LID+Y +C  +N A+ +F+
Sbjct: 423 LLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFN 482

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K +V W+SMI G+  ++Q  EA++LF+++ L G+  +  T + ++     + ++ H
Sbjct: 483 MLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFH 542

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            +  H + +K G+++   V+ A+   YAKCG I+    LF  E    +D+I WNSMI+ Y
Sbjct: 543 GQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLF--ESTCGEDVICWNSMITTY 600

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +  +++  M +++V P+ +TF+G+L+AC +AG V EG   F  MK +Y  EP 
Sbjct: 601 AQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPG 660

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHYAS+VNL GR+G +  A+E ++ MP KP A VW  LLSAC +    E+    AE  +
Sbjct: 661 IEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMAL 720

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
             +P ++G YVLLSNIYA+ G W  V  +R  +   G  K  GCSWIE+ K VH F    
Sbjct: 721 LADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRG 780

Query: 694 QSHPQADAIYTIL 706
           + HP+A+ IY++L
Sbjct: 781 REHPEAELIYSVL 793



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 168/607 (27%), Positives = 298/607 (49%), Gaps = 17/607 (2%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           IHAR  +  G   +L L++ L+  Y+NLG L  ++ +F+ +   N + +G+++   ++ G
Sbjct: 40  IHARATVA-GRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHG 98

Query: 111 EYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
             +  + ++      S   P E     V+R+C+       GE++H   VKL  D+   VG
Sbjct: 99  RDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVG 158

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
            AL+  Y K   G  +E  ++   F  L  R    WN++I+   Q G    + ELF  M 
Sbjct: 159 TALINLYAKL--GCMDEAMLV---FHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMG 213

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           +EG   D   L + + +   L  LE GR +H  A  S    D SV   L+ +Y K + L 
Sbjct: 214 IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLS 273

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A+ LFD M  ++ V W  MIS Y Q+ F  E++ +   M ++G++ D F   + ++S  
Sbjct: 274 AARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 333

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++  I  G+Q+HA+V++   +    V N+LIDMY +CE L  AR +FD++     +S+++
Sbjct: 334 SLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNA 393

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI+GY  +    EA+ +F  M+   +    +T +++L    +  A+E  K +HG  +K G
Sbjct: 394 MIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSG 453

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            +      +A+   Y+KC  +  A  +F+   +  KD++ WNSMI  +A++    +  KL
Sbjct: 454 TSLDLYAASALIDVYSKCSLVNDAKTVFN--MLHYKDMVIWNSMIFGHAQNEQGEEAIKL 511

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + Q+  S + P+  TF+ L+T       +  G+     + ++ G +       +++++  
Sbjct: 512 FNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKA-GVDNDPHVSNALIDMYA 570

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           + G + E R L +      D   W  +++    H   E A L   +L+  E E   NYV 
Sbjct: 571 KCGFIKEGRMLFEST-CGEDVICWNSMITTYAQHGHAEEA-LQVFRLMG-EAEVEPNYVT 627

Query: 646 LSNIYAA 652
              + +A
Sbjct: 628 FVGVLSA 634



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 259/501 (51%), Gaps = 17/501 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTVELKSLELGRIVHCVA 259
           W S+IS+  Q+G+ + +  LF   +    E  +  L+ ++LR+  + K++ LG  VH +A
Sbjct: 87  WGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIA 146

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V  D   ++ V TAL+++Y+KL  +++A ++F  +  +  V WN +I+ Y Q G    +L
Sbjct: 147 VKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVAL 206

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL   M   G R D F   +AVS+ S +  +E G+Q+H    R+ ++   SV N LID+Y
Sbjct: 207 ELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLY 266

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
           C+C  L+ ARK+FD ++ + +VSW++MI GY+ +  + EA+ +F  M   G + D     
Sbjct: 267 CKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACT 326

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +IL +C ++ A+   + +H + +K  L +   V  A+   YAKC  +  A  +FD    D
Sbjct: 327 SILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAED 386

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
             D I++N+MI  Y+K+ D ++   ++ +M+   +RP L+TF+ LL    +   +E  + 
Sbjct: 387 --DAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQ 444

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           I   + +S G        ++++++  +   +++A+ +   + +K D  +W  ++     +
Sbjct: 445 IHGLIIKS-GTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYK-DMVIWNSMIFGHAQN 502

Query: 620 SETELA-ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP--- 675
            + E A +L  + L+S    N   +V L  + +         +   ++   G+   P   
Sbjct: 503 EQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVS 562

Query: 676 --------GCSWIEIGKLVHE 688
                    C +I+ G+++ E
Sbjct: 563 NALIDMYAKCGFIKEGRMLFE 583



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 174/348 (50%), Gaps = 4/348 (1%)

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            L   +H  A V+    DL +   LL  YS L  L DA+ LFD+M  ++ V W  +IS Y
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 310 YQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
            Q G    ++ L +   ++     + F   + + + +  K +  G+Q+H   ++   D  
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDAN 154

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           V V  +LI++Y +   ++ A  +F ++  +T V+W+++I GY        AL LF  M +
Sbjct: 155 VYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGI 214

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           EGV  D   + + + AC  +G LE  + +HGY+ +    + +SV   +   Y KC  +  
Sbjct: 215 EGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 274

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A +LFD   ++ +++++W +MIS Y ++   ++   ++  M Q+  +PD      +L +C
Sbjct: 275 ARKLFD--CMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSC 332

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
            +   + +GR I   + ++   E  +    +++++  +  H+ EAR +
Sbjct: 333 GSLAAIWQGRQIHAHVIKA-DLEADEYVKNALIDMYAKCEHLTEARAV 379


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/696 (32%), Positives = 367/696 (52%), Gaps = 57/696 (8%)

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           A+   L  +Q+ F S+   ++ +  ++L +L +F      L  +K ++L  ++ +  +  
Sbjct: 115 ASCNALESAQETFTSV---DASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQD 171

Query: 136 FVIR-------SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY----IKCDGGFE 184
            ++        SC+ +     G ++H  ++ LGF+    +   LV FY    +  D    
Sbjct: 172 LIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVI 231

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            E   I   F      WN LIS  V+NG  +K+   +K M  +G   D+ T  ++L++  
Sbjct: 232 TENSNILHPFP-----WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACG 286

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           E   L  G+ VH     S     L V+ AL+SMY K   +  A+ LFDK+ ++D V WN 
Sbjct: 287 EELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNS 346

Query: 305 MIS-----------------------------------AYYQSGFPKESLELLMCMVRSG 329
           MIS                                    Y ++G  K +LELL  M + G
Sbjct: 347 MISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXG 406

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D    I  + + S + + + GK++H+  +R+      +V NSLI MY  C+DL  A 
Sbjct: 407 SHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAY 466

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +F  ++ K+++SW+S+I G    D+S EA  L  EM L G+E ++VTI ++LP C  + 
Sbjct: 467 LLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVA 526

Query: 450 ALEHVKYLHGY-SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            L+H K  H Y + +        +  A+   YA+ G +  A  +FD   +  +D +T+ S
Sbjct: 527 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD--MLGERDKMTYTS 584

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI+ Y   G+     KL+ +M    ++PD IT + +L+AC ++GLV +G+++F++M+  Y
Sbjct: 585 MIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLY 644

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G  P  EH+A M +L GRAG +++A+E++++MP+KP   +W  L+ AC++H  TE+ E  
Sbjct: 645 GLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWA 704

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AEKL+ M+PEN G YVL++N+YAAAG WN +AK+R F+RD G++K PGC+W+++G     
Sbjct: 705 AEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDVGTGFSP 764

Query: 689 FWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
           F   D S+  AD IY +L  L + I E    SSE+ 
Sbjct: 765 FLVDDTSNANADEIYPLLEGLTMVIKEAGYISSEDF 800



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 218/478 (45%), Gaps = 51/478 (10%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLI 72
           V  +R  A+     +      SLL+ C + + L   +Q+H  +II  G  Q+ IL   L+
Sbjct: 158 VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHG-HIISLGFEQHPILVPKLV 216

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
             Y+   LL  +  +  +    +   +  ++ +  + G  +K L  YKQM  + + P   
Sbjct: 217 TFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNF 276

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TYP V+++C   LD   G+++H  +          V +AL+  Y KC      + G+ + 
Sbjct: 277 TYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKC-----GKVGIARD 331

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELF--------------------------- 221
            F  +  R    WNS+IS+    G   ++FELF                           
Sbjct: 332 LFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGN 391

Query: 222 --------KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
                     MR  G+  DS  LI  L +   +   +LG+ +H  A+ S F +  +V  +
Sbjct: 392 YKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNS 451

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MYS+   L+ A +LF  M  K  + WN +IS        +E+  LL  M+ SG   +
Sbjct: 452 LITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPN 511

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCARKI 391
             T  + +   + + N++ GK+ H  + R   D++  + + N+L+DMY     +  AR++
Sbjct: 512 YVTIASVLPLCARVANLQHGKEFHCYMTRR-EDFKDHLLLWNALVDMYARSGKVLEARRV 570

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           FD +  +  ++++SMI GY    +   AL+LF EM    ++ D +T+I +L AC + G
Sbjct: 571 FDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSG 628


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/735 (31%), Positives = 400/735 (54%), Gaps = 59/735 (8%)

Query: 19  LRFPAN--QTRPHMTATHSFSLLNLCENPQHLQQIHA----RYIILHGLHQNLILSSNLI 72
           L  PA+  +  P +T   S  LL  C+  + L+Q+H     + ++ H    NL   + LI
Sbjct: 11  LLVPASLKEANP-ITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNL---NKLI 66

Query: 73  DSYANLGLLSLSQQVFNSITSPNS-----LLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            S   +G L       N+    +       +Y  +++  +  G  ++ +L+Y QM +  +
Sbjct: 67  ASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGI 126

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFE 184
            P + T+PF++ +CS +L    G ++H  V+K+G +    V ++L+ FY +C   D G +
Sbjct: 127 VPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRK 186

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
              GM++R        W SLI+       S+++  LF  M   G E +  T++ ++ +  
Sbjct: 187 LFDGMLERNV----VSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
           +LK LELG+ V   + +S+   +LS  +  AL+ MY K   +  A+ +FD+ ++K+ V++
Sbjct: 243 KLKDLELGKKV--CSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMY 300

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N ++S Y    +  + L +L  M++ G R D  T ++ +++ + + ++  GK  HA VLR
Sbjct: 301 NTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLR 360

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH--------- 413
           NG +   ++ N++IDMY +C     A K+F+ +  KTVV+W+S+I G V           
Sbjct: 361 NGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRI 420

Query: 414 -DQSLE---------------------ALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            D+ LE                     A+ LF EM+ +G+  D VT++ I  AC  +GAL
Sbjct: 421 FDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGAL 480

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           +  K++  Y  K  ++    + TA+   +++CG    A  +F  ++++ +D+  W + I 
Sbjct: 481 DLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVF--KRMEKRDVSAWTAAIG 538

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
             A  G+     +L+ +M +  V+PD + F+ LLTAC + G V++GR +F  M++++G  
Sbjct: 539 VMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIR 598

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P   HY  MV+LLGRAG ++EA +L++ MP +P+  VWG LL+AC+ H   ELA   AEK
Sbjct: 599 PHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEK 658

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  + PE  G +VLLSNIYA+AGKW  VA++R  ++++G++K PG S IE+  L+HEF +
Sbjct: 659 LTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTS 718

Query: 692 ADQSHPQADAIYTIL 706
            D+SH +   I  +L
Sbjct: 719 GDESHAENTHIGLML 733


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/714 (30%), Positives = 375/714 (52%), Gaps = 66/714 (9%)

Query: 53  ARYIILHGL-HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           AR ++L  + H N+I  + +++ Y  LG LS + ++F  + + +   + T++    +  +
Sbjct: 58  ARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQ 117

Query: 112 YEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
           Y  +L  +  M       P   T+ + ++SC  L +     ++   V K G     DV  
Sbjct: 118 YLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAA 177

Query: 171 ALVEFYIKCDG------------------------GFENEKGMIQ--RKFKDLKSR---- 200
           ALV+ +++C                          G+    G+      F  +  R    
Sbjct: 178 ALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVS 237

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN ++S   Q+G+  ++ ++   M+ +G   DS T  + L +   L SL  G+ +H   +
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 297

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +  C D  V +AL+ +Y+K    ++AK +F+ + D++ V W ++I+ + Q G   ES+E
Sbjct: 298 RNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVE 357

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M       D F     +S   +  ++  G+Q+H+  L++G    V V NSLI MY 
Sbjct: 358 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYA 417

Query: 381 ECEDLNC-------------------------------ARKIFDSVKTKTVVSWSSMIKG 409
           +C++L                                 AR+ FD + TK V++W++M+  
Sbjct: 418 KCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGA 477

Query: 410 YVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           Y+ H    + LR+++ M  E  V  D+VT + +   C ++GA +    + G ++K+GL  
Sbjct: 478 YIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIL 537

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            +SV  A+   Y+KCG I  A ++FD   ++ KDI++WN+MI+ Y++HG   Q  +++  
Sbjct: 538 DTSVANAVITMYSKCGRILEARKVFDF--LNVKDIVSWNAMITGYSQHGMGKQAIEIFDD 595

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           + +   +PD I+++ +L+ C ++GLV+EG+  F  MK  +   P  EH++ MV+LLGRAG
Sbjct: 596 ILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAG 655

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
           H+ EA++L+ +MP KP A VWG LLSACK+H   ELAEL A+ +  ++  ++G+Y+L++ 
Sbjct: 656 HLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAK 715

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           IYA AGK +  A++R  +RD+G+KK PG SW+E+   VH F A D SHPQ  AI
Sbjct: 716 IYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAI 769



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 182/414 (43%), Gaps = 66/414 (15%)

Query: 49  QQIHARYIILHGLHQNL-----ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
           +Q+HA+ I      +NL      ++S L++ YA  G    ++ VFNS+   N++ +  ++
Sbjct: 290 KQLHAQVI------RNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
               + G + +++ ++ QM  + M   +     +I  C   +D   G ++H+  +K G  
Sbjct: 344 AGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 164 SFDDVGDALVEFYIKCDG--------GFENEKGMIQ-----------------RKFKDLK 198
               V ++L+  Y KCD          F NEK ++                  R+F D  
Sbjct: 404 QAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGM 463

Query: 199 S-----RWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELG 252
           S      WN+++   +Q+G  E    ++ +M  E     D  T + L +   +L + +LG
Sbjct: 464 STKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLG 523

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +    V      D SV  A+++MYSK   + +A+ +FD ++ KD V WN MI+ Y Q 
Sbjct: 524 DQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQH 583

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY---QV 369
           G  K+++E+   +++ G + D  + +A +S  S           H+ +++ G  Y     
Sbjct: 584 GMGKQAIEIFDDILKRGAKPDYISYVAVLSGCS-----------HSGLVQEGKSYFDMMK 632

Query: 370 SVHN---------SLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTH 413
            VHN          ++D+      L  A+ + D +  K T   W +++     H
Sbjct: 633 RVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIH 686



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 124/336 (36%), Gaps = 69/336 (20%)

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK-------------------------- 390
           H  ++  G    V + N+L+  Y  C  L  AR+                          
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 391 ------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILP 443
                 +F  +  + V SW++++ GY    Q L +L  F  M   G    +  T    + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE-------- 495
           +C  +G       L G   K G    S V  A+   + +CG +++A  LF          
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 496 ------------------EKIDS---KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
                             E  DS   +D+++WN M+SA ++ G   +   +   M+   V
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDE 592
           R D  T+   LTAC     +  G+ +  ++  +    P  + Y  +++V L  + G   E
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PCIDPYVASALVELYAKCGCFKE 323

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHS-ETELAEL 627
           A+ +   +  + +   W  L++    H   TE  EL
Sbjct: 324 AKGVFNSLHDRNNV-AWTVLIAGFLQHGCFTESVEL 358


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/669 (32%), Positives = 364/669 (54%), Gaps = 8/669 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +HA  +   G   +  + + LI  Y   G +  + +VF ++ + N + + +++   S+
Sbjct: 215 EAVHALALKAGGF-SDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSE 273

Query: 109 FGEYEKTLLVYKQMAL---QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            G + +   V+K++ +   + + P   T   VI +C+ + +   G  +H    KLG    
Sbjct: 274 NGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEE 333

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM- 224
             V ++LV+ Y KC G     + +           WN++I    + G     FEL + M 
Sbjct: 334 VTVNNSLVDMYSKC-GYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQ 392

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           R E    +  T++N+L +      L   + +H  A    F KD  V  A ++ Y+K +SL
Sbjct: 393 REEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSL 452

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           + A+ +F  M  K    WN +I A+ Q+GFP +SL+L + M+ SG   D FT  + + + 
Sbjct: 453 DCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + +K +  GK++H  +LRNG +    +  SL+ +Y +C  +   + IFD ++ K++V W+
Sbjct: 513 ARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWN 572

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
            MI G+  ++   EAL  F +M   G++   + +  +L AC  + AL   K +H +++K 
Sbjct: 573 VMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKA 632

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            L+  + V  A+   YAKCGC+E +  +FD  +++ KD   WN +I+ Y  HG   +  +
Sbjct: 633 HLSEDAFVTCALIDMYAKCGCMEQSQNIFD--RVNEKDEAVWNVIIAGYGIHGHGLKAIE 690

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+  M+    RPD  TFLG+L AC +AGLV EG     +M+  YG +P  EHYA +V++L
Sbjct: 691 LFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDML 750

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAG + EA +LV +MP +PD+ +W  LLS+C+ + + E+ E  ++KL+ +EP  A NYV
Sbjct: 751 GRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYV 810

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSN+YA  GKW+ V K+R  +++ GL K  GCSWIEIG +V+ F  +D S  ++  I  
Sbjct: 811 LLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQ 870

Query: 705 ILGILELEI 713
               LE +I
Sbjct: 871 TWIKLEKKI 879



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 154/610 (25%), Positives = 299/610 (49%), Gaps = 25/610 (4%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C + +++   +++HA     H L  +++LS+ +I  Y+  G  S S+ VF++    
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           +  LY  +L   S+   +   + ++ ++ +   + P   T P V ++C+ + D   GE +
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           HA  +K G  S   VG+AL+  Y KC  GF        + F+ +++R    WNS++    
Sbjct: 218 HALALKAGGFSDAFVGNALIAMYGKC--GFVESA---VKVFETMRNRNLVSWNSVMYACS 272

Query: 210 QNGKSEKSFELFKLMRM---EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
           +NG   +   +FK + +   EG   D  T++ ++ +   +  + +G +VH +A      +
Sbjct: 273 ENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITE 332

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +++VN +L+ MYSK   L +A+ LFD    K+ V WN +I  Y + G  +   ELL  M 
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQ 392

Query: 327 R-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           R    R +  T +  + + S    +   K++H    R+G      V N+ +  Y +C  L
Sbjct: 393 REEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSL 452

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           +CA ++F  ++ KTV SW+++I  +  +    ++L LF  M   G++ D  TI ++L AC
Sbjct: 453 DCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             +  L   K +HG+ ++ GL     +  ++   Y +C  + +   +FD  K+++K ++ 
Sbjct: 513 ARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFD--KMENKSLVC 570

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN MI+ ++++    +    + QM    ++P  I   G+L AC     +  G+ +     
Sbjct: 571 WNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFAL 630

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE---- 621
           +++  E +    A ++++  + G M++++ +  D   + D  VW  +++   +H      
Sbjct: 631 KAHLSEDAFVTCA-LIDMYAKCGCMEQSQNIF-DRVNEKDEAVWNVIIAGYGIHGHGLKA 688

Query: 622 TELAELTAEK 631
            EL EL   K
Sbjct: 689 IELFELMQNK 698



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 231/498 (46%), Gaps = 26/498 (5%)

Query: 84  SQQVFNSITSPNSLL------YGTILK---NLSKFGEYEKTLLVYKQMALQSMYPAED-- 132
           S  +F   T P S L      +  IL+   NL   G     L +    A      + D  
Sbjct: 32  SNNLFPPFTVPKSSLTSHTKTHSPILQRLHNLCDSGNLNDALNLLHSHAQNGTVSSSDIS 91

Query: 133 --TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKG 188
                 ++R+C    +   G K+HA +V       +DV     ++  Y  C G   + +G
Sbjct: 92  KEAIGILLRACGHHKNIHVGRKVHA-LVSASHKLRNDVVLSTRIIAMYSAC-GSPSDSRG 149

Query: 189 MIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVEL 246
           +    K KDL   +N+L+S   +N     +  LF +L+       D+ TL  + ++   +
Sbjct: 150 VFDAAKEKDL-FLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGV 208

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
             +ELG  VH +A+ +    D  V  AL++MY K   +E A  +F+ M +++ V WN ++
Sbjct: 209 ADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVM 268

Query: 307 SAYYQSGFPKES---LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            A  ++G   E     + L+     G   D+ T +  + + + +  +  G  +H    + 
Sbjct: 269 YACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKL 328

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G   +V+V+NSL+DMY +C  L  AR +FD    K VVSW+++I GY           L 
Sbjct: 329 GITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELL 388

Query: 424 SEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
            EM + E V V+ VT++N+LPAC     L  +K +HGY+ + G      V  A   +YAK
Sbjct: 389 QEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAK 448

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           C  ++ A  +F    ++ K + +WN++I A+A++G   +   L+  M  S + PD  T  
Sbjct: 449 CSSLDCAERVFC--GMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIG 506

Query: 543 GLLTACVNAGLVEEGRII 560
            LL AC     +  G+ I
Sbjct: 507 SLLLACARLKFLRCGKEI 524


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/671 (33%), Positives = 368/671 (54%), Gaps = 23/671 (3%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  GL  ++ + + L+  Y   G +  + +VF+ +   N + + +++   S+ G    +
Sbjct: 172 VIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDS 231

Query: 116 L-LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
             L+ + +  + + P   T   ++  C+   +   G  IH   VKLG      V +A+V 
Sbjct: 232 FDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVY 291

Query: 175 FYIKCDGGFENEKGM--IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
            Y KC  G+ NE  M  ++   K++ S WN++IS     G   ++F L + M+++G E  
Sbjct: 292 MYSKC--GYLNEAQMSFVKNNNKNVVS-WNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348

Query: 233 SG--TLINLLRSTVE------LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           +   T++N+L + ++      LK L      HC        + + ++ A +  Y+K  +L
Sbjct: 349 ANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF-------QHVELSNAFILAYAKCGAL 401

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
             A+ +F  + DK    WN +I  + Q+G P+++L LL  M  SG + D FT  + + + 
Sbjct: 402 NSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLAC 461

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + +K++++GK++H  VLRNG +    V  SL+  Y  C   + AR +FD +K K +VSW+
Sbjct: 462 AHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWN 521

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI GY  +    E+L LF +   EG++   + I+++  AC  + AL   K  HGY +K 
Sbjct: 522 AMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKA 581

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
                + V  +I   YAK GCI+ + ++FD   +  K++ +WN++I A+  HG   +  +
Sbjct: 582 LQTEDAFVGCSIIDMYAKSGCIKESRKVFD--GLKDKNVASWNAIIVAHGIHGHGKEAIE 639

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           LY +MK+    PD  T++G+L AC +AGLVEEG   FKEM+     EP  EHYA ++++L
Sbjct: 640 LYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDML 699

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
            RAG +D+A  LV +MP + D R+W  LL +C+     E+ E  A+KL+ +EP+ A NYV
Sbjct: 700 ARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYV 759

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSN+YA  GKW+GV ++R  +++ GL+K  GCSWIE+G  V+ F   D   P++  I  
Sbjct: 760 LLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRV 819

Query: 705 ILGILELEIME 715
           I   LE  I E
Sbjct: 820 IWRRLEERISE 830



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 168/577 (29%), Positives = 292/577 (50%), Gaps = 30/577 (5%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            + +L++ LI  YA  G    S+ VF+++ + N + +  ++   ++ G Y   + V+  +
Sbjct: 77  NDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDL 136

Query: 123 ALQSMY-PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKC 179
              + + P   T+P VI++C  +LD   GE IH  V+K+G   D F  VG+ALV  Y KC
Sbjct: 137 VSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVF--VGNALVGMYGKC 194

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF---DSGTL 236
               E  K        +L S WNS+I    +NG S  SF+L  LM M G E    D  T+
Sbjct: 195 GAVDEAMKVFDFMPETNLVS-WNSMICAFSENGFSRDSFDL--LMEMLGEEGLLPDVVTV 251

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           + +L        +++G  +H +AV     +++ VN A++ MYSK   L +A+M F K ++
Sbjct: 252 VTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNN 311

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSG--FRADLFTAIAAVSSISTMKNIEWGK 354
           K+ V WN MISA+   G   E+  LL  M   G   +A+  T +  + +      +   K
Sbjct: 312 KNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLK 371

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++H    R+   + V + N+ I  Y +C  LN A K+F  +  KTV SW+++I G+  + 
Sbjct: 372 ELHGYSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNG 430

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              +AL L  +M   G + D+ TI ++L AC ++ +L++ K +HGY ++ GL +   V T
Sbjct: 431 DPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGT 490

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           ++   Y  CG    A  LFD  ++  K++++WN+MIS Y+++G   +   L+ +     +
Sbjct: 491 SLLSHYIHCGKASSARVLFD--RMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGI 548

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY--EPSQEHYA----SMVNLLGRAG 588
           +   I  + +  AC     +  G       KE++GY  +  Q   A    S++++  ++G
Sbjct: 549 QSHEIAIVSVFGACSQLSALRLG-------KEAHGYVLKALQTEDAFVGCSIIDMYAKSG 601

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            + E+R++   +  K  A  W  ++ A  +H   + A
Sbjct: 602 CIKESRKVFDGLKDKNVAS-WNAIIVAHGIHGHGKEA 637



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 230/446 (51%), Gaps = 16/446 (3%)

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA-LVEFYIKCDGGFENEKG 188
           A++    ++++C    D  +G ++H  V        D V +  L++ Y  C    ++   
Sbjct: 42  AKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLV 101

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELK 247
               + K+L  +WN+L+S   +NG      ++F  L+     + D+ T  +++++   + 
Sbjct: 102 FDNMETKNL-IQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            + LG ++H + +      D+ V  AL+ MY K  ++++A  +FD M + + V WN MI 
Sbjct: 161 DVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMIC 220

Query: 308 AYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           A+ ++GF ++S +LLM M+   G   D+ T +  +   +    ++ G  +H   ++ G  
Sbjct: 221 AFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLS 280

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
            +V V+N+++ MY +C  LN A+  F     K VVSW++MI  +       EA  L  EM
Sbjct: 281 EEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 427 KLEGVEV--DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +++G E+  + VTI+N+LPAC++   L  +K LHGYS +     +  ++ A  ++YAKCG
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHV-ELSNAFILAYAKCG 399

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A ++F    I  K + +WN++I  +A++GD  +   L  QM  S  +PD  T   L
Sbjct: 400 ALNSAEKVF--HGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSL 457

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGY 570
           L AC +   ++ G       KE +GY
Sbjct: 458 LLACAHLKSLQYG-------KEIHGY 476


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/596 (34%), Positives = 336/596 (56%), Gaps = 18/596 (3%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+  +++ C+   D  +G  +HAQ+   G  S      AL   Y KC         
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKC-----RRPA 68

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF----DSGTLINLL 240
             +R F  + SR    WN++++   +NG    + E   ++RM+G E     DS TL+++L
Sbjct: 69  DARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAME--AVVRMQGEEGGERPDSVTLVSVL 126

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +  + ++L   R VH  A+ +   + ++V+TA+L  Y K  ++E A+ +FD M  ++ V
Sbjct: 127 PACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSV 186

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN MI  Y  +G   E++ L   MV+ G      + +AA+ +   +  ++  +++H  +
Sbjct: 187 SWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELL 246

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVVSWSSMIKGYVTHDQSLEA 419
           +R G    VSV N+LI  Y +C+  + A ++F+ +   KT +SW++MI G+  ++   +A
Sbjct: 247 VRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDA 306

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            RLF+ M+LE V  D  T+++++PA  +I      +++HGYS++  L+    V TA+   
Sbjct: 307 ERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDM 366

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG + +A  LFD  +   + +ITWN+MI  Y  HG      +L+ +MK +   P+  
Sbjct: 367 YSKCGRVSIARRLFDSAR--DRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNET 424

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL +L AC +AGLV+EG+  F  MK+ YG EP  EHY +MV+LLGRAG +DEA   +K+
Sbjct: 425 TFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKN 484

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP +P   V+G +L ACK+H   ELAE +A+ +  + PE    +VLL+NIYA A  W  V
Sbjct: 485 MPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDV 544

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           A++RT +  +GL+KTPG S I++   VH F++   +H  A  IY  L  L  EI +
Sbjct: 545 ARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKD 600



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 172/346 (49%), Gaps = 5/346 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C + + L   +++HA + +  GL + + +S+ ++D+Y   G +  ++ VF+ +  
Sbjct: 124 SVLPACADARALHACREVHA-FALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPV 182

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            NS+ +  ++   +  G   + + ++ +M  + +   + +    +++C  L       ++
Sbjct: 183 RNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRV 242

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  +V++G  S   V +AL+  Y KC       +   +   K  +  WN++I    QN  
Sbjct: 243 HELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNEC 302

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            E +  LF  M++E    DS TL++++ +  ++      R +H  ++     +D+ V TA
Sbjct: 303 PEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTA 362

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK   +  A+ LFD   D+  + WN MI  Y   GF + ++EL   M  +G   +
Sbjct: 363 LIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPN 422

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDM 378
             T ++ +++ S    ++ G++  A++ ++ G +  +  + +++D+
Sbjct: 423 ETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDL 468


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/684 (31%), Positives = 378/684 (55%), Gaps = 14/684 (2%)

Query: 37  SLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL  C   +N  H +++H  ++   G  QN ++  +LI  YA  G +  +QQVF  +  
Sbjct: 10  ALLQRCSSAKNVDHGRRVHW-HVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILER 68

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +   +  ++    + G+Y++ L ++ QM  + + P + TY  ++ +C+       G +I
Sbjct: 69  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 128

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCD---GGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           H Q+++ GF+    VG AL+  Y KC    G +++ K +  R   D+ S W ++I+  VQ
Sbjct: 129 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR---DVVS-WTAMIAACVQ 184

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           + +   +  L++ M+++G   +  TL  +  +  +   L  G+ ++ +        D+ V
Sbjct: 185 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRV 244

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             + ++M+     L DA+ LF+ M D+D V WNI+I+ Y Q+    E++ L   + + G 
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           +A+  T +  ++  +++ ++  GK +H  V   G D  V V  +L+ +Y  CE    A K
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWK 364

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           IF  + +K V++W+ M   Y  +    EAL+LF EM+LEG      T++ +L  C ++ A
Sbjct: 365 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAA 424

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+  + +H + ++ G      V TA+   Y KCG +  A  +F  EK+  +DI+ WNSM+
Sbjct: 425 LQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVF--EKMAKRDILVWNSML 482

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
            AYA+HG + +  +L+ QM+    + D ++F+ +L+A  ++G V +G   F  M + +  
Sbjct: 483 GAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSI 542

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAELTA 629
            P+ E Y  +V+LLGRAG + EA ++V  +    PD  +W  LL AC+ H++T+ A+  A
Sbjct: 543 TPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAA 602

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           E+++  +P ++G YV+LSN+YAAAG W+GV +MR  +R RG+KK PG S IEI   VHEF
Sbjct: 603 EQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEF 662

Query: 690 WAADQSHPQADAIYTILGILELEI 713
              D+SHP+   IY  L +L  E+
Sbjct: 663 LEGDRSHPRRHPIYAELDVLNSEM 686



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 192/378 (50%), Gaps = 4/378 (1%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+   + LL+     K+++ GR VH       F ++  V   L+ MY++  S+ +A+ +F
Sbjct: 4   DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           + +  KD   W  MI  Y Q G    +L +   M          T +A +++ ++ ++++
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            G ++H  +L+ G +  V V  +LI+MY +C  +  A   F  ++ + VVSW++MI   V
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 183

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            HDQ   A  L+  M+L+GV  + +T+  +  A  +   L   K+++       + S   
Sbjct: 184 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVR 243

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  +    +   G +  A  LF E+ +D +D++TWN +I+ Y ++ ++ +  +L+ +++Q
Sbjct: 244 VMNSAMNMFGNAGLLGDARRLF-EDMVD-RDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
             ++ + ITF+ +L    +   + +G++I + +KE+ GY+       ++++L GR     
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA-GYDRDVVVATALMSLYGRCEAPG 360

Query: 592 EARELVKDMPFKPDARVW 609
           +A ++  DM  K D   W
Sbjct: 361 QAWKIFVDMGSK-DVITW 377



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 144/285 (50%), Gaps = 4/285 (1%)

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           F+ D    +A +   S+ KN++ G+++H +V   G +    V   LI MY +C  +  A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F+ ++ K V +W+ MI  Y        AL +F +M+ E V    VT + IL AC +  
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L+    +HG  ++ G      V TA+   Y KCG +  A + F  ++++ +D+++W +M
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSF--KRLEHRDVVSWTAM 178

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+A  +H  ++    LY +M+   V P+ IT   +  A  +   + EG+ I+  +  S  
Sbjct: 179 IAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYS-LVSSRV 237

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            E       S +N+ G AG + +AR L +DM    D   W  +++
Sbjct: 238 MESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVIT 281


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/640 (32%), Positives = 349/640 (54%), Gaps = 18/640 (2%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT--LLVYKQMALQSMYPAEDTYPF 136
           G LS +  +F+ I SP+   Y  +++  S          L +Y++M    + P   T+PF
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
            +++CS L D   G  IH   +  G  +   V  AL++ Y+KC    +          +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 197 LKSRWNSLISLAVQNGKSEKSFE--LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           L + WN++++    +G    +    L   M+M     ++ TL+ LL    +  +L  G  
Sbjct: 191 LVA-WNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 255 VHCVAVV----------SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           VH   +           S     + + TALL MY+K  SL  A+ +FD M  ++ V W+ 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQMHANVLRN 363
           +I  +       ++  L   M+  G      T+IA A+ + +++ ++  G+Q+HA + ++
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    ++  NSL+ MY +   ++ A  +FD +  K  VS+S+++ GYV + ++ EA  +F
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+   VE D  T+++++PAC ++ AL+H +  HG  +  GL S +S+  A+   YAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I+++ ++F+   + S+DI++WN+MI+ Y  HG   +   L+ +M      PD +TF+ 
Sbjct: 490 GRIDLSRQVFN--MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 547

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL+AC ++GLV EG+  F  M+  YG  P  EHY  MV+LL R G +DEA E ++ MP +
Sbjct: 548 LLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
            D RVW  LL AC+++   +L +  +  +  + PE  GN+VLLSNIY+AAG+++  A++R
Sbjct: 608 ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVR 667

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
              + +G KK+PGCSWIEI   +H F   DQSHPQ+  IY
Sbjct: 668 IIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIY 707



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 232/509 (45%), Gaps = 30/509 (5%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P N T P      S    + C    H   IHA      GL  +L +S+ L+D Y     L
Sbjct: 123 PNNYTFPFALKACSALADHHCGRAIHRHAIHA------GLQADLFVSTALLDMYVKCACL 176

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL--LVYKQMALQSMYPAEDTYPFVIR 139
             +  +F ++ + + + +  +L   +  G Y   +  L+  QM +  + P   T   ++ 
Sbjct: 177 PDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLP 236

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDD----------VGDALVEFYIKCDGGFENEKGM 189
             +       G  +HA  ++    S  +          +G AL++ Y KC          
Sbjct: 237 LLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLL-----Y 291

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTV 244
            +R F  + +R    W++LI   V   +  ++F LFK M  +G  F S T I + LR+  
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 351

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  L +G  +H +   S    DL+   +LLSMY+K   ++ A  LFD+M+ KD V ++ 
Sbjct: 352 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 411

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++S Y Q+G  +E+  +   M       D  T ++ + + S +  ++ G+  H +V+  G
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 471

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              + S+ N+LIDMY +C  ++ +R++F+ + ++ +VSW++MI GY  H    EA  LF 
Sbjct: 472 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFL 531

Query: 425 EMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           EM   G   D VT I +L AC + G  +E   + H      GL         +    ++ 
Sbjct: 532 EMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRG 591

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISA 512
           G ++ A E      + + D+  W +++ A
Sbjct: 592 GFLDEAYEFIQSMPLRA-DVRVWVALLGA 619



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 217/452 (48%), Gaps = 28/452 (6%)

Query: 14  GHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQN------ 64
            H+  ++   ++ RP   A+   +LL L      L Q   +HA Y I   LH N      
Sbjct: 212 AHLLSMQMQMHRLRP--NASTLVALLPLLAQQGALAQGTSVHA-YRIRACLHSNRNSKSK 268

Query: 65  ----LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
               ++L + L+D YA  G L  +++VF+++ + N + +  ++          +  L++K
Sbjct: 269 LTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFK 328

Query: 121 QMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            M  Q + + +  +    +R+C+ L     GE++HA + K G  +    G++L+  Y K 
Sbjct: 329 AMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 180 DGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            G  +    +  +   KD  S +++L+S  VQNG++E++F +FK M+    E D+ T+++
Sbjct: 389 -GLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 446

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ +   L +L+ GR  H   ++     + S+  AL+ MY+K   ++ ++ +F+ M  +D
Sbjct: 447 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 506

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN MI+ Y   G  KE+  L + M   GF  D  T I  +S+ S    +  GK    
Sbjct: 507 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF- 565

Query: 359 NVLRNGSDYQVSVHN--SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI---KGYVT 412
           +V+R+G      + +   ++D+      L+ A +   S+  +  V  W +++   + Y  
Sbjct: 566 HVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 625

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            D   +  R+  E+  EG   +FV + NI  A
Sbjct: 626 IDLGKKVSRMIQELGPEGTG-NFVLLSNIYSA 656


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/671 (32%), Positives = 363/671 (54%), Gaps = 10/671 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIH   + L G+  ++ + ++L+  Y   G++  + Q+F  +   + + + T++    K
Sbjct: 129 RQIHGHVLKL-GVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQK 187

Query: 109 FGEYEKTLLVYKQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             +Y ++L+ ++ M  +  +YP        I SCS L     G +IH  VVK G D  + 
Sbjct: 188 SMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEY 247

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSR----WNSLISLAVQNGKSEKSFELFK 222
           +  +L+E Y+KC G  +N + +      KD   R    WN +IS  V NG   ++  LF 
Sbjct: 248 LVSSLIEMYMKC-GSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFI 306

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M + G + D  T+++L     E   +  G+ +H +        ++ V TALL MY K  
Sbjct: 307 KMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCG 366

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +     +F +  + + ++W+ +IS   QSG P ++LEL          AD    +A + 
Sbjct: 367 DMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLR 426

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S++     G Q+H    + G    V V ++L+D+Y +C D+  ++K+F  +  K +VS
Sbjct: 427 ACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVS 486

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+++I GY   + + EAL+ F +M+LE +  + VTI  IL  C ++  +   K +HGY +
Sbjct: 487 WNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLI 546

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           + GL S   V+ ++  +YAKCG  ++   L+  EK+  ++ ++WNS+I     H    + 
Sbjct: 547 RQGLGSTVLVSNSLIATYAKCG--DINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEM 604

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
             L+ +M  S ++PD +TF  +L+AC +AG V+EG   FK M E +  +P  E Y  MV+
Sbjct: 605 IVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVD 664

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAGH+++A +L+  MP  PD R+WG LL +CK H +  LAE+ A  +  + P + G 
Sbjct: 665 LLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGY 724

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            VLL+N+Y   GK    +K+R+ ++D GLKK PGCSWIE+    H F A D+SH Q+D I
Sbjct: 725 RVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEI 784

Query: 703 YTILGILELEI 713
           Y  +  L  EI
Sbjct: 785 YAAVESLTTEI 795



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 159/609 (26%), Positives = 294/609 (48%), Gaps = 35/609 (5%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY-PFVIR 139
           LS   Q F S++  N+     +++  ++ G ++  + VY +M    +   E  Y P +I+
Sbjct: 63  LSTKIQTFVSVSFANN-----VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIK 117

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVG--DALVEFYIKCDGGFENEKGMIQRKFKDL 197
           +   L D   G +IH  V+KLG    DDV   ++L+  Y KC G  E+   M ++  +  
Sbjct: 118 AFGGLCDVYKGRQIHGHVLKLGV--LDDVSVVNSLLTMYWKC-GVVEDAVQMFEKMPEVD 174

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVH 256
              WN++IS   ++    +S   F+ M  E G   +    ++ + S   L+SL  GR +H
Sbjct: 175 LVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIH 234

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR-----VVWNIMISAYYQ 311
            V V S    +  + ++L+ MY K  S+++A+ +F+ + DKD      V+WN+MIS Y  
Sbjct: 235 GVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVS 294

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G   ++L L + M+  G + D  T ++  S  S   +I +GKQ+H  + + G    + V
Sbjct: 295 NGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRV 354

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +L+DMY +C D+    KIF   +   ++ WS++I          +AL LF E K+E  
Sbjct: 355 ETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDG 414

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
             D   ++ +L AC ++        +HG + K+G  S   V +A+   YAKC  +  + +
Sbjct: 415 LADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKK 474

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F   ++  KD+++WN++IS YA+     +  K +  M+  ++RP+ +T   +L+ C + 
Sbjct: 475 VF--LRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHL 532

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYA------SMVNLLGRAGHMDEARELVKDMPFKPD 605
                   +    KE +GY   Q   +      S++    + G ++ +    + MP + D
Sbjct: 533 S-------VMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERND 585

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLIS--MEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
              W  ++    MHS T+   +  +K+++  ++P++     +LS    A     G    +
Sbjct: 586 VS-WNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFK 644

Query: 664 TFLRDRGLK 672
           + + D  LK
Sbjct: 645 SMVEDFNLK 653


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/658 (32%), Positives = 356/658 (54%), Gaps = 5/658 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI-TSPNSLLYGTILKNLSK 108
           Q+HA   +  GL  ++ +++ L+  Y   G +  ++ VF+      N++ +  ++    K
Sbjct: 121 QLHA-LAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVK 179

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                  + V+ +M    + P E  +  V+ +C+   D  +G K+HA V++ G+D     
Sbjct: 180 NDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFT 239

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +ALV+ Y K  G       +  +  +     WN+ IS  V +G  + + EL   M+  G
Sbjct: 240 ANALVDMYSKL-GDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  TL ++L++     +  LGR +H   V ++   D  +   L+ MY+K   L+DAK
Sbjct: 299 LVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAK 358

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD +  +D V+WN +IS         E+L L   M + GF  +  T  A + S ++++
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            I   +Q+HA   + G      V N LID Y +C+ LN A ++F+   +  +++++SMI 
Sbjct: 419 AISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMIT 478

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
                D   +A++LF EM  +G++ D   + ++L AC ++ A E  K +H + +K    S
Sbjct: 479 ALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
                 A+  +YAKCG IE A   F    +  K +++W++MI   A+HG   +   ++ +
Sbjct: 539 DVFAGNALVYTYAKCGSIEDADLAF--SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHR 596

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    + P+ IT   +L AC +AGLV+E +  F  MKE +G E ++EHYA M++LLGRAG
Sbjct: 597 MVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAG 656

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +D+A ELV  MPF+ +A VWG LL+A ++H + EL  L AEKL  +EPE +G +VLL+N
Sbjct: 657 KLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLAN 716

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            YA+AG W+ VAK+R  ++D  +KK P  SW+E+   VH F   D+SHP+A  IY  L
Sbjct: 717 TYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKL 774



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/549 (25%), Positives = 251/549 (45%), Gaps = 55/549 (10%)

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWN 202
            + G  IHA ++K G   F    + L+ FY KC        G  +R F ++       W+
Sbjct: 20  LLQGAHIHAHLLKSGL--FAVFRNHLLSFYSKC-----RLPGSARRVFDEIPDPCHVSWS 72

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           SL++    N     +   F+ MR      +   L  +L+   +      G  +H +A+ +
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMAT 129

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESLEL 321
               D+ V  AL++MY     +++A+M+FD+   +++ V WN ++SAY ++     ++++
Sbjct: 130 GLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKV 189

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              MV  G + + F     V++ +  +++E G+++HA V+R G D  V   N+L+DMY +
Sbjct: 190 FGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSK 249

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
             D+  A  +F  V    VVSW++ I G V H     AL L  +MK  G+  +  T+ +I
Sbjct: 250 LGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSI 309

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L AC   GA    + +HG+ +K   +S + +   +   YAK G ++ A ++FD   I  +
Sbjct: 310 LKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDW--IPQR 367

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D++ WN++IS  +     ++   L+ +M++     +  T   +L +  +   + + R + 
Sbjct: 368 DLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVH 427

Query: 562 KEMKE-----------------------SYGYEPSQEH-------YASMVNLLGRAGHMD 591
              ++                       +Y Y   ++H       + SM+  L +  H +
Sbjct: 428 ALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGE 487

Query: 592 EARELVKDMPFK---PDARVWGPLLSACKMHSETELAELTAEKLIS---MEPENAGNYVL 645
           +A +L  +M  K   PD  V   LL+AC   S  E  +     LI    M    AGN ++
Sbjct: 488 DAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALV 547

Query: 646 LSNIYAAAG 654
            +  YA  G
Sbjct: 548 YT--YAKCG 554



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 15/318 (4%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G  +HA++L++G        N L+  Y +C     AR++FD +     VSWSS++  Y  
Sbjct: 23  GAHIHAHLLKSG--LFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +    +AL  F  M+   V  +   +  +L    + G       LH  +M  GL     V
Sbjct: 81  NAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIFV 137

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             A+   Y   G ++ A  +FDE   + ++ ++WN ++SAY K+   S   K++ +M   
Sbjct: 138 ANALVAMYGGFGFVDEARMVFDEAGCE-RNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWG 196

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            V+P+   F  ++ AC  +  +E GR +   M    GY+       ++V++  + G +  
Sbjct: 197 GVQPNEFGFSCVVNACTGSRDLEAGRKV-HAMVIRTGYDKDVFTANALVDMYSKLGDIRM 255

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN-AGNYVLLSNIY- 650
           A  +   +P + D   W   +S C +H   + A    E L+ M+      N   LS+I  
Sbjct: 256 AAVVFGKVP-ETDVVSWNAFISGCVLHGHDQHA---LELLLQMKSSGLVPNVFTLSSILK 311

Query: 651 --AAAGKWNGVAKMRTFL 666
             A +G +N   ++  F+
Sbjct: 312 ACAGSGAFNLGRQIHGFM 329


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/680 (33%), Positives = 357/680 (52%), Gaps = 9/680 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           HL Q HA+ IILHG   ++ L + L    ++LG +  ++ +F S+  P+  L+  +++  
Sbjct: 35  HLAQTHAQ-IILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGF 93

Query: 107 SKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           S       +L V+  +   + + P   TY F I + S   D  +G  IH Q V  G DS 
Sbjct: 94  SVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSE 153

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK-LM 224
             +G  +V+ Y K     E+ + +  R  +     WN++IS   +N    +S ++F+ L+
Sbjct: 154 LLLGSNIVKMYFKF-WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
                  D+ TL+++L +  EL+ L LG  +H +A  +       V T  +S+YSK   +
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           +    LF +    D V +N MI  Y  +G  + SL L   ++ SG R     +   VS +
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR---LRSSTLVSLV 329

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
               ++     +H   L++      SV  +L  +Y +  ++  ARK+FD    K++ SW+
Sbjct: 330 PVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWN 389

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI GY  +  + +A+ LF EM+      + VTI  IL AC  +GAL   K++H      
Sbjct: 390 AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST 449

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
              S   V+TA+   YAKCG I  A  LFD   +  K+ +TWN+MIS Y  HG   +   
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFD--LMTKKNEVTWNTMISGYGLHGQGQEALN 507

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           ++ +M  S + P  +TFL +L AC +AGLV+EG  IF  M   YG+EPS +HYA MV++L
Sbjct: 508 IFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAGH+  A + ++ M  +P + VW  LL AC++H +T LA   +EKL  ++P+N G +V
Sbjct: 568 GRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSNI++A   +   A +R   + R L K PG + IEIG+  H F + DQSHPQ   IY 
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYE 687

Query: 705 ILGILELEIMEGRRESSEEL 724
            L  LE ++ E   +   EL
Sbjct: 688 KLEKLEGKMREAGYQPETEL 707


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/700 (31%), Positives = 381/700 (54%), Gaps = 32/700 (4%)

Query: 19  LRFPANQTRPHMTA----THSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDS 74
           +  P+N  R   TA    TH+ SL       Q  + +HA+  I+      + ++++L++ 
Sbjct: 1   MTLPSN--RSFFTALLQYTHNRSL-------QKGKALHAQ--IIKSSSSCVYIANSLVNL 49

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT--LLVYKQMALQSMYPAED 132
           YA    L  ++ VF  I + + + +  I+   S+ G    +  + ++++M  ++  P   
Sbjct: 50  YAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAH 109

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKGMI 190
           T+  V  + S L+D   G   HA  +K+  DS  DV  G +L+  Y  C  G   E    
Sbjct: 110 TFAGVFTAASTLVDAAGGRLAHAVAIKM--DSCRDVFVGSSLMNMY--CKAGLTPEA--- 162

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           ++ F  +  R    W ++IS       + ++  LF+LMR E    +     ++L +    
Sbjct: 163 RKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLP 222

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           + +  G+ +HC+AV +     +SV  AL++MY+K  SL+DA   F+  SDK+ + W+ MI
Sbjct: 223 ELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMI 282

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           + Y QSG   ++L+L   M  SG R   FT +  +++ S +     GKQ+H  +L+ G +
Sbjct: 283 TGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFE 342

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
            Q+ V  +L+DMY +C  +  ARK FD ++   +V W+SMI GYV + ++ +AL L+  M
Sbjct: 343 SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRM 402

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           ++EG+  + +T+ ++L AC ++ ALE  K +H  ++K G      + +A+   YAKCGC+
Sbjct: 403 EMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCL 462

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           +    +F   ++ ++D+I+WN+MIS  +++G   +  +L+ +M+    +PD +TF+ +L+
Sbjct: 463 KDGTLVF--RRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILS 520

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC + GLVE G   F+ M + +G +P  EHYA MV++L RAG + EA E  +        
Sbjct: 521 ACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGM 580

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +W  +L AC+ +   EL     EKL+ +  + +  YVLLS+IY+A G+W  V ++R  +
Sbjct: 581 CLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMM 640

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           + RG+ K PGCSWIE+   VH F   DQ HPQ   I+  L
Sbjct: 641 KLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVEL 680


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 329/560 (58%), Gaps = 3/560 (0%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +HA + KLG +S   VG AL++ Y  C       +       KD+ S W  +++   +N 
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVS-WTGMVACYAEND 121

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           + + S +LF  MRM G   +  T   +L++ + L++  +G+ VH   + + +  DL V  
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            LL +Y+K     D   +F++M   D + W+ MIS Y QS   +E++EL   M R+    
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           + FT  + + S ++++N++ GKQ+H +VL+ G D  V V N+L+D+Y +C  L+ + K+F
Sbjct: 242 NQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLF 301

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +  +  V+W++MI GYV      +AL L+  M    V+   VT  ++L AC ++ A+E
Sbjct: 302 MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAME 361

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
               +H  S+K   +    V  A+   YAKCG I+ A  +FD   +  +D I+WN+MIS 
Sbjct: 362 LGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFD--MLSERDEISWNAMISG 419

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y+ HG   +  K +  M++++  P+ +TF+ +L+AC NAGL++ G+  FK M + YG EP
Sbjct: 420 YSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEP 479

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             EHY  MV LLGR+GH+D+A +L++++P +P+ +VW  LL AC +H++ +L  ++A+++
Sbjct: 480 CMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQI 539

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + ++P++   +VLLSNIYA   +WN VA +R F++++G+KK PG SWIE   +VH F   
Sbjct: 540 LQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVG 599

Query: 693 DQSHPQADAIYTILGILELE 712
           D SHP    I  +L  L ++
Sbjct: 600 DTSHPDMKMISGMLEWLNMK 619



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 236/464 (50%), Gaps = 11/464 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   N  + + LID+YA  G ++ ++Q F++I   + + +  ++   ++   ++ +L ++
Sbjct: 71  GHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLF 130

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M +    P   T+  V+++C  L  F  G+ +H  V+K  ++    VG  L++ Y K 
Sbjct: 131 AEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKF 190

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
             G  N+   + R F+++       W+ +IS   Q+ +S ++ ELF  MR      +  T
Sbjct: 191 --GDAND---VLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
             ++L+S   +++L+LG+ VHC  +      ++ V+ AL+ +Y+K   L+++  LF ++ 
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           +++ V WN MI  Y QSG   ++L L   M+    +A   T  + + + +++  +E G Q
Sbjct: 306 NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H+  L+   D  V V N+LIDMY +C  +  AR +FD +  +  +SW++MI GY  H  
Sbjct: 366 IHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE-HVKYLHGYSMKLGLNSLSSVNT 474
             EAL+ F  M+      + +T ++IL AC N G L+    Y        G+       T
Sbjct: 426 VGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYT 485

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +     + G ++ A +L +E  ++  ++  W +++ A   H D
Sbjct: 486 CMVWLLGRSGHLDKAVKLIEEIPLEP-NVKVWRALLGACVIHND 528



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 207/417 (49%), Gaps = 4/417 (0%)

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +LI   VQ+ + ++  +LF  +  EG E +      +L+  V ++  EL   +H      
Sbjct: 11  TLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKL 70

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               +  V TAL+  Y+   S+  A+  FD ++ KD V W  M++ Y ++   ++SL+L 
Sbjct: 71  GHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLF 130

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M   GF  + FT    + +   ++    GK +H  VL+   +  + V   L+D+Y + 
Sbjct: 131 AEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKF 190

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
            D N   ++F+ +    V+ WS MI  Y   +QS EA+ LF +M+   V  +  T  ++L
Sbjct: 191 GDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVL 250

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            +C +I  L+  K +H + +K+GL+    V+ A+   YAKCG ++ + +LF E  + +++
Sbjct: 251 QSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFME--LPNRN 308

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            +TWN+MI  Y + GD  +   LY  M +  V+   +T+  +L AC +   +E G  I  
Sbjct: 309 EVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI-H 367

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            +     Y+       +++++  + G +  AR LV DM  + D   W  ++S   MH
Sbjct: 368 SLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR-LVFDMLSERDEISWNAMISGYSMH 423



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 158/320 (49%), Gaps = 4/320 (1%)

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M D++ V +  +I  Y QS    E ++L   + R G   + F     +  + +++  E  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
             +HA + + G +    V  +LID Y  C  +N AR+ FD++  K +VSW+ M+  Y  +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
           D+  ++L+LF+EM++ G   +  T   +L AC+ + A    K +HG  +K        V 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
             +   Y K G       +F+E  +   D+I W+ MIS YA+     +  +L+ QM+++ 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEE--MPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           V P+  TF  +L +C +   ++ G+ +   + +  G + +     +++++  + G +D +
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGNVFVSNALMDVYAKCGRLDNS 297

Query: 594 RELVKDMPFKPDARVWGPLL 613
            +L  ++P + +   W  ++
Sbjct: 298 MKLFMELPNRNEV-TWNTMI 316



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C + ++LQ   Q+H  +++  GL  N+ +S+ L+D YA  G L  S ++F  + +
Sbjct: 248 SVLQSCASIENLQLGKQVHC-HVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPN 306

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + + T++    + G+ +K L +YK M    +  +E TY  V+R+C+ L     G +I
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H+  +K  +D    VG+AL++ Y KC G  +N + +     +  +  WN++IS    +G 
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKC-GSIKNARLVFDMLSERDEISWNAMISGYSMHGL 425

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
             ++ + F++M+      +  T +++L +      L++G+
Sbjct: 426 VGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQ 465


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 318/536 (59%), Gaps = 35/536 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++      N  S  + +L+  M   G   +S +   LL+S  + K+L  G+ +H   +
Sbjct: 33  WNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVL 92

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDA-------------------------------KM 289
              +  D+ VNT+L+SMY++   LEDA                               + 
Sbjct: 93  KLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARK 152

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           LFD++S KD V WN MIS Y ++   KE+LEL   M+++  + D  T +  VS+ +   +
Sbjct: 153 LFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGS 212

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           IE G+Q+H+ +  +G    + + N LID+Y +C ++  A  +F  +  K V+SW+++I G
Sbjct: 213 IELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGG 272

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLN 467
           +   +   EAL LF EM   G   + VT++++LPAC ++GA++  +++H Y  K   G+ 
Sbjct: 273 HTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVT 332

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           + SS+ T++   YAKCG IE A ++FD   + ++ + +WN+MI  +A HG  +  F L++
Sbjct: 333 NASSLLTSLIDMYAKCGDIEAAKQVFDS--MLTRSLSSWNAMIFGFAMHGKANAAFDLFS 390

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M+++ + PD ITF+GLL+AC ++G+++ GR IF+ M + Y   P  EHY  M++LLG  
Sbjct: 391 KMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHC 450

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G   EA+E+++ MP +PD  +W  LL ACKMH+  EL E  A+ LI +EPEN G+YVLLS
Sbjct: 451 GLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLS 510

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           NIYA AG+W+ VAK+RT L D+G+KK PGCS IEI  +VHEF   D+ HP+   IY
Sbjct: 511 NIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIY 566



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 227/473 (47%), Gaps = 38/473 (8%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           LS +  +F +I  PN L++ T+ +  +   +    L +Y  M    + P   ++PF+++S
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK------- 193
           C+     I G++IH  V+KLG+D    V  +L+  Y + +G  E+   +  R        
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQ-NGRLEDAHKVFDRSSHRHVVS 133

Query: 194 -------------------------FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
                                     KD+ S WN++IS  V+    +++ EL+K M    
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVS-WNAMISGYVETCNFKEALELYKDMMKTN 192

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + D  T++ ++ +  +  S+ELGR +H       F  ++ +   L+ +YSK   +E A 
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LF  ++ KD + WN +I  +      KE+L L   M+RSG   +  T ++ + + + + 
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 312

Query: 349 NIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            I+ G+ +H  + +   G     S+  SLIDMY +C D+  A+++FDS+ T+++ SW++M
Sbjct: 313 AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAM 372

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL-HGYSMKLG 465
           I G+  H ++  A  LFS+M+  G++ D +T + +L AC + G L+  +++    S    
Sbjct: 373 IFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYK 432

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           +         +      CG  + A E+     ++   +I W S++ A   H +
Sbjct: 433 ITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVI-WCSLLKACKMHNN 484



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 173/368 (47%), Gaps = 35/368 (9%)

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F+ + + + ++WN M   +  +     +L+L +CM+  G   + ++    + S +  K 
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI-- 407
           +  G+Q+H +VL+ G D  + V+ SLI MY +   L  A K+FD    + VVS++++I  
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140

Query: 408 ---KGYVTHDQSL--------------------------EALRLFSEMKLEGVEVDFVTI 438
              +GY+ + + L                          EAL L+ +M    V+ D  T+
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + ++ AC   G++E  + LH +    G  S   +   +   Y+KCG +E A  LF  + +
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLF--QGL 258

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KD+I+WN++I  +     + +   L+ +M +S   P+ +T L +L AC + G ++ GR
Sbjct: 259 AKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGR 318

Query: 559 IIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
            I   + K   G   +     S++++  + G ++ A+++   M        W  ++    
Sbjct: 319 WIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSWNAMIFGFA 377

Query: 618 MHSETELA 625
           MH +   A
Sbjct: 378 MHGKANAA 385



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 172/361 (47%), Gaps = 11/361 (3%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           H++++  + LI  YA+ G ++ ++++F+ I+  + + +  ++    +   +++ L +YK 
Sbjct: 128 HRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKD 187

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M   ++ P E T   V+ +C+       G ++H+ +   GF S   + + L++ Y KC G
Sbjct: 188 MMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKC-G 246

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             E   G+ Q   K     WN+LI         +++  LF+ M   G   +  T++++L 
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306

Query: 242 STVELKSLELGRIVHCV--AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           +   L ++++GR +H      +       S+ T+L+ MY+K   +E AK +FD M  +  
Sbjct: 307 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSL 366

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
             WN MI  +   G    + +L   M ++G   D  T +  +S+ S    ++ G+ +  +
Sbjct: 367 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRS 426

Query: 360 VLRNGSDYQVSV----HNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHD 414
           +     DY+++     +  +ID+   C     A+++  ++  +   V W S++K    H+
Sbjct: 427 M---SQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHN 483

Query: 415 Q 415
            
Sbjct: 484 N 484



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 151/311 (48%), Gaps = 41/311 (13%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           + L+ A  IF++++   ++ W++M +G+  +  S+ AL+L+  M   G+  +  +   +L
Sbjct: 13  DGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLL 72

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE------- 495
            +C    AL   + +HG+ +KLG +    VNT++   YA+ G +E A ++FD        
Sbjct: 73  KSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVV 132

Query: 496 ----------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
                                 ++I  KD+++WN+MIS Y +  ++ +  +LY  M +++
Sbjct: 133 SYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN 192

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           V+PD  T + +++AC  +G +E GR +   + E +G+  + +    +++L  + G ++ A
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQLHSWI-EDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 594 RELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
             L + +  K D   W  L+     M+   E   L  E L S E  N  +  +LS + A 
Sbjct: 252 CGLFQGLA-KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPN--DVTMLSVLPAC 308

Query: 653 A-------GKW 656
           A       G+W
Sbjct: 309 AHLGAIDIGRW 319


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/646 (32%), Positives = 348/646 (53%), Gaps = 37/646 (5%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I +YANLG L  ++++FN     NS+ + +++    K G   + L  + QM      P+
Sbjct: 74  MISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           + T   V+R+CS L    +G+ IH   +K+  ++   V   LV+ Y KC    E E    
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
               +    +W ++++   QNG+S K+ + FK MR +G E +  T  ++L +   + +  
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            GR VH   + S F  ++ V +AL+ MY+K   L  A+M+ D M   D V WN MI    
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G+ +E+L L   M     R D FT  + + S+++ KN++ G+ +H+  ++ G D   +
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT 373

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V N+L+DMY +  +L+CA  +F+ +  K V+SW+S++ GYV +    +AL+LF +M+   
Sbjct: 374 VSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTAR 433

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V++D   +  +  AC  +  +E  + +H   +K    SL S   ++   YAKCGC+E A 
Sbjct: 434 VDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAI 493

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +FD   ++++++I+W ++I  YA++G                                 
Sbjct: 494 RVFDS--METRNVISWTAIIVGYAQNG--------------------------------- 518

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
             LVE G+  F+ M++ YG +P+ +HYA M++LLGRAG ++EA  L+  M  +PDA +W 
Sbjct: 519 --LVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWK 576

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLSAC++H   EL E   + LI +EP N+  YVLLSN+++ AG+W   A +R  ++  G
Sbjct: 577 SLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMG 636

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           + K PG SWIE+   VH F + D+SHP A  IY+ +  + + I E 
Sbjct: 637 INKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEA 682



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 185/394 (46%), Gaps = 37/394 (9%)

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ-- 311
            + C+  ++ +  +L  N  LLS  SK   +++A+ LFD+M  +D+  WNIMISAY    
Sbjct: 24  FIRCIHGIAHYSSNLDSNQ-LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLG 82

Query: 312 ------------------------SGFPK-----ESLELLMCMVRSGFRADLFTAIAAVS 342
                                   SG+ K     E L     M   G +   +T  + + 
Sbjct: 83  NLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLR 142

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVV 401
           + ST+  +  GK +H   ++   +  + V   L+DMY +C+ L  A  +F S+   K  V
Sbjct: 143 ACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYV 202

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
            W++M+ GY  + +SL+A++ F EM+ +G+E +  T  +IL AC +I A    + +HG  
Sbjct: 203 QWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCI 262

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +  G      V +A+   YAKCG +  A  + D  +ID  D++ WNSMI     HG   +
Sbjct: 263 IWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEID--DVVCWNSMIVGCVTHGYMEE 320

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ +M   D+R D  T+  +L +  +   ++ G  +   +    G++  +    ++V
Sbjct: 321 ALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESV-HSLTIKTGFDACKTVSNALV 379

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++  + G++  A ++   +    D   W  L++ 
Sbjct: 380 DMYAKQGNLSCALDVFNKI-LDKDVISWTSLVTG 412



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 137/267 (51%), Gaps = 4/267 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   II  G   N+ + S L+D YA  G L+ ++ + +++   + + + +++     
Sbjct: 256 RQVHG-CIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVT 314

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L+++ +M  + +   + TYP V++S +   +   GE +H+  +K GFD+   V
Sbjct: 315 HGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTV 374

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV+ Y K  G       +  +   KD+ S W SL++  V NG  EK+ +LF  MR  
Sbjct: 375 SNALVDMYAK-QGNLSCALDVFNKILDKDVIS-WTSLVTGYVHNGFHEKALQLFCDMRTA 432

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
             + D   +  +  +  EL  +E GR VH   + S     LS   +L++MY+K   LEDA
Sbjct: 433 RVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDA 492

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGF 314
             +FD M  ++ + W  +I  Y Q+G 
Sbjct: 493 IRVFDSMETRNVISWTAIIVGYAQNGL 519



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 130/260 (50%), Gaps = 3/260 (1%)

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N +I  Y    +L  ARK+F+    K  ++WSS++ GY  +   +E LR FS+M  +G +
Sbjct: 72  NIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQK 131

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
               T+ ++L AC  +  L   K +H Y++K+ L +   V T +   Y+KC C+  A  L
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F     D K+ + W +M++ YA++G+  +  + + +M+   +  +  TF  +LTAC +  
Sbjct: 192 FFSLP-DRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS 250

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
               GR +   +  S G+ P+    +++V++  + G +  AR ++  M    D   W  +
Sbjct: 251 AYAFGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARMILDTMEID-DVVCWNSM 308

Query: 613 LSACKMHSETELAELTAEKL 632
           +  C  H   E A +   K+
Sbjct: 309 IVGCVTHGYMEEALVLFHKM 328


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/508 (37%), Positives = 302/508 (59%), Gaps = 4/508 (0%)

Query: 201 WNSLI-SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +N++I  LA  N  S +   ++K M  +G   D+ T+  +L++  E +++  G  VH  A
Sbjct: 92  YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQA 151

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +      D+ V+  L+ MY+    +  A+ +FD    +D V W  MI  Y + GF +E +
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDM 378
            L   M     +AD  T +  +SS + + ++  G+++H  ++RN + +  V V N+L+DM
Sbjct: 212 GLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDM 271

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C D N ARK+F  +  K VVSW+SMI G     Q  E+L +F +M+  GV+ D VT+
Sbjct: 272 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 331

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + +L +C N+G LE  K++H Y  +  + +   +  A+   YAKCG I+ A  +F  + +
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVF--QAM 389

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + KD+ ++ +MI   A HG   +   L+++M +  + PD +TF+G+LTAC + GLVEEGR
Sbjct: 390 NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 449

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F++M   Y   P  EHY  MV+LLGRAG ++EA E +++MP +PDA V G LL ACK+
Sbjct: 450 KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKI 509

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H + EL E   +K+  +EP   G YVL+SNIY++A +W    K+R  +++R L+KTPGCS
Sbjct: 510 HGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCS 569

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTIL 706
            IE+  ++HEF   D+SHP+   IY +L
Sbjct: 570 SIELDGVIHEFQKGDKSHPKIKEIYKLL 597



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 174/592 (29%), Positives = 265/592 (44%), Gaps = 64/592 (10%)

Query: 26  TRPHMTATHSFSLLNL---CENPQHLQQIHARYI-ILHGLHQNLILSSNL---------I 72
           T PH    H  S L+    C++ + L+QIHA  I  +      L +S+ L         I
Sbjct: 13  TLPHDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPI 72

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL-SKFGEYEKTLLVYKQMALQSMYPAE 131
           D    L LL+        + +PN  LY  I++ L +   +  + L+VYKQM  + + P  
Sbjct: 73  DPRYALSLLA-------QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDN 125

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
            T PFV+++C+       GE++H Q +K+G  S   V + L+  Y  CD      K    
Sbjct: 126 YTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDT 185

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
              +DL S W ++I   V+ G + +   LF  M  E  + D  TL+ +L S   L  L L
Sbjct: 186 SPQRDLVS-WTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRL 244

Query: 252 GRIVHCVAVV-SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           GR +H   +  S+   D+ V  AL+ MY K      A+ +F +M  K+ V WN MIS   
Sbjct: 245 GRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLA 304

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           Q G  KESL +   M R G + D  T +A ++S + +  +E GK +HA + RN       
Sbjct: 305 QKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF 364

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           + N+L+DMY +C  ++ A  +F ++  K V S+++MI G   H Q  +AL LFSEM   G
Sbjct: 365 IGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMG 424

Query: 431 VEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           +E D VT + +L AC ++G +E   KY    S    L         +     + G I  A
Sbjct: 425 IEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEA 484

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            E                                     ++   + PD      LL AC 
Sbjct: 485 EEF------------------------------------IRNMPIEPDAFVLGALLGACK 508

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDM 600
             G VE G  + K++++    EP ++  Y  M N+   A    +A +L K M
Sbjct: 509 IHGKVELGESVMKKIEK---IEPRKDGAYVLMSNIYSSANRWRDALKLRKTM 557


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/640 (32%), Positives = 349/640 (54%), Gaps = 18/640 (2%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT--LLVYKQMALQSMYPAEDTYPF 136
           G LS +  +F+ I SP+   Y  +++  S          L +Y++M    + P   T+PF
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
            +++CS L D   G  IH   +  G  +   V  AL++ Y+KC    +          +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 197 LKSRWNSLISLAVQNGKSEKSFE--LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           L + WN++++    +G    +    L   M+M     ++ TL+ LL    +  +L  G  
Sbjct: 191 LVA-WNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 255 VH--CVAVV--------SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           VH  C+           S     + + TALL MY+K  SL  A+ +FD M  ++ V W+ 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQMHANVLRN 363
           +I  +       ++  L   M+  G      T+IA A+ + +++ ++  G+Q+HA + ++
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    ++  NSL+ MY +   ++ A  +FD +  K  VS+S+++ GYV + ++ EA  +F
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+   VE D  T+++++PAC ++ AL+H +  HG  +  GL S +S+  A+   YAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I+++ ++F+   + S+DI++WN+MI+ Y  HG   +   L+ +M      PD +TF+ 
Sbjct: 490 GRIDLSRQVFN--MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFIC 547

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL+AC ++GLV EG+  F  M   YG  P  EHY  MV+LL R G +DEA E ++ MP +
Sbjct: 548 LLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
            D RVW  LL AC+++   +L +  +  +  + PE  GN+VLLSNIY+AAG+++  A++R
Sbjct: 608 ADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVR 667

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
              + +G KK+PGCSWIEI   +H F   DQSHPQ+  IY
Sbjct: 668 IIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIY 707



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 231/509 (45%), Gaps = 30/509 (5%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P N T P      S    + C    H   IHA      GL  +L +S+ L+D Y     L
Sbjct: 123 PNNYTFPFALKACSALADHHCGRAIHRHAIHA------GLQADLFVSTALLDMYVKCACL 176

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL--LVYKQMALQSMYPAEDTYPFVIR 139
             +  +F ++ + + + +  +L   +  G Y   +  L+  QM +  + P   T   ++ 
Sbjct: 177 PDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLP 236

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDD----------VGDALVEFYIKCDGGFENEKGM 189
             +       G  +HA  ++       +          +G AL++ Y KC          
Sbjct: 237 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLL-----Y 291

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTV 244
            +R F  + +R    W++LI   V   +  ++F LFK M  +G  F S T I + LR+  
Sbjct: 292 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 351

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  L +G  +H +   S    DL+   +LLSMY+K   ++ A  LFD+M+ KD V ++ 
Sbjct: 352 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 411

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++S Y Q+G  +E+  +   M       D  T ++ + + S +  ++ G+  H +V+  G
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 471

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              + S+ N+LIDMY +C  ++ +R++F+ + ++ +VSW++MI GY  H    EA  LF 
Sbjct: 472 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFL 531

Query: 425 EMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           EM   G   D VT I +L AC + G  +E   + H      GL         +    ++ 
Sbjct: 532 EMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRG 591

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISA 512
           G ++ A E      + + D+  W +++ A
Sbjct: 592 GFLDEAYEFIQSMPLRA-DVRVWVALLGA 619



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 214/451 (47%), Gaps = 26/451 (5%)

Query: 14  GHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQN------ 64
            H+  ++   ++ RP   A+   +LL L      L Q   +HA Y I   LH N      
Sbjct: 212 AHLLSMQMQMHRLRP--NASTLVALLPLLAQQGALAQGTSVHA-YCIRACLHPNRNSKSK 268

Query: 65  ----LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
               ++L + L+D YA  G L  +++VF+++ + N + +  ++          +  L++K
Sbjct: 269 LTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFK 328

Query: 121 QMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            M  Q + + +  +    +R+C+ L     GE++HA + K G  +    G++L+  Y K 
Sbjct: 329 AMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 388

Query: 180 DGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            G  +    +  +   KD  S +++L+S  VQNG++E++F +FK M+    E D+ T+++
Sbjct: 389 -GLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 446

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ +   L +L+ GR  H   ++     + S+  AL+ MY+K   ++ ++ +F+ M  +D
Sbjct: 447 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 506

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ-MH 357
            V WN MI+ Y   G  KE+  L + M   GF  D  T I  +S+ S    +  GK   H
Sbjct: 507 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 566

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI---KGYVTH 413
                 G   ++  +  ++D+      L+ A +   S+  +  V  W +++   + Y   
Sbjct: 567 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 626

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           D   +  R+  E+  EG   +FV + NI  A
Sbjct: 627 DLGKKVSRMIQELGPEGTG-NFVLLSNIYSA 656


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/694 (32%), Positives = 378/694 (54%), Gaps = 18/694 (2%)

Query: 30  MTATHSFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           +T TH   L+N C    + +H ++IH R+++      ++IL ++++  Y   G L  ++ 
Sbjct: 99  VTYTH---LINACSSLRSLEHGRKIH-RHMLTCNYQPDMILQNHILSMYGKCGSLKEARN 154

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           +F+S+   N + + +++   S++GE +  + +Y QM      P   T+  +++SCS L D
Sbjct: 155 MFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDD 214

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
           F    ++HA V+K  F +     +AL+  Y K     +      +   KDL S W S+I+
Sbjct: 215 FKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLIS-WGSMIA 273

Query: 207 LAVQNGKSEKSFELFKLMRMEGA----EFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
              Q G   ++   F+ M  +      EF  G+  +     +E    + GR +H + +  
Sbjct: 274 GFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP---DCGRQIHGLCIKF 330

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               DL    +L  MY+K   LE A+ +F  +   D V WN +I+ +      KES    
Sbjct: 331 GLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFF 390

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M  +G   +  T ++ + + S    +  G Q+H+ +++ G +  + V NSL+ MY +C
Sbjct: 391 SQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKC 450

Query: 383 EDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
            +LN A ++F+ +  K  +VSW++++   +  +Q+ E LRL   M    ++ D VT+ N+
Sbjct: 451 SNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNV 510

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L +   I + E    +H + MK GLN   SV+ A+   Y KCG +E A ++FD   I + 
Sbjct: 511 LVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDS--IGNP 568

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           DII+W+S+I  YA+ G   + F+L+  M+   V+P+ ITF+G+LTAC + G+VEEG  ++
Sbjct: 569 DIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY 628

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + M+E Y   P++EH + MV+LL RAG +D A + +K MPF PD  VW  LL+ACK+H  
Sbjct: 629 RTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGN 688

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            E+ +  AE ++ ++P N+   V+L NI+A++G W   A++R+ +R   + K PG SWIE
Sbjct: 689 LEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIE 748

Query: 682 IGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           I   VH F A D  HP+   IYT+L  L L+I++
Sbjct: 749 IKDKVHVFLAEDNLHPERGKIYTMLEELMLQILD 782



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 245/478 (51%), Gaps = 17/478 (3%)

Query: 202 NSLISLAVQNGKSE--KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           + +ISL  +N   E  K+F++F+  +   +   S T  +L+ +   L+SLE GR +H   
Sbjct: 67  DKIISLCKKNLHREALKAFDIFQ--KCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHM 124

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +  ++  D+ +   +LSMY K  SL++A+ +FD M  K+ V W  MIS Y + G    ++
Sbjct: 125 LTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAI 184

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L + M+RSG   D FT  + V S S + + +  +Q+HA+VL++     +   N+LI MY
Sbjct: 185 TLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMY 244

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVDFVTI 438
            +   +  A  +F  +  K ++SW SMI G+      LEAL  F EM  + V + +    
Sbjct: 245 TKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVF 304

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +   AC  +   +  + +HG  +K GL S      ++   YAKCG +E A  +F    I
Sbjct: 305 GSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF--YHI 362

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           +  D++ WN++I+ +A   +  +    ++QM+ + + P+ +T L LL AC    ++  G 
Sbjct: 363 EKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGI 422

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +   + +  G+        S++++  +  ++++A ++ +D+  K D   W  LL+AC  
Sbjct: 423 QVHSYIVK-MGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481

Query: 619 HSET-ELAELTAEKLIS-MEPENAGNYVLLSNIYAAAGK---WNGVAKMRTFLRDRGL 671
            ++  E+  LT     S ++P+    +V L+N+  ++G+   +   +++  F+   GL
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPD----HVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 351/650 (54%), Gaps = 5/650 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +L + + LID Y+    L  ++ VF  +++ +S+ + +++      G +E  L +Y
Sbjct: 151 GFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMY 210

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +  +  M P   T   V+ +C  L+    G  +H  + K+G      +G+ L+  Y K 
Sbjct: 211 HKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKF 270

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +   E  +   +   KD    WN++I    Q G+ E S +LF  M ++G   D  ++ + 
Sbjct: 271 ERLREARRVFSKMAVKD-SVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITST 328

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           +R+  +   L++G+ VH   + S F  D      L+ MY+K   L  A+ +FD    KD 
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +I+ Y QSG+ KE LE    M++   + D  T +  +S  S + +I  G+ +H +
Sbjct: 389 VTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCD 447

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           V++ G + ++ + NSL+D+Y +C +++   K+F  +    ++SW+++I   V  D     
Sbjct: 448 VIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            ++ +EM+ EG+  D  T++ ILP C  +      K +HGY  K G  S   +  A+   
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEM 567

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG +E   ++F   K   KD++TW ++ISA+  +G+  +  K +  M+ S V PD +
Sbjct: 568 YSKCGSLENCIKVFKYMK--EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSV 625

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
            F+  + AC ++G+V+EG   F  MK  Y  EP  EHYA +V+LL R+G + +A E +  
Sbjct: 626 AFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILS 685

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPDA +WG LLSAC+    T +A+  ++K++ +  ++ G YVL+SNIYA  GKW+ V
Sbjct: 686 MPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQV 745

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
             +R  ++ +GLKK PG SWIEI K V+ F   D+S  Q D +  +L  L
Sbjct: 746 KTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYL 795



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 173/588 (29%), Positives = 299/588 (50%), Gaps = 9/588 (1%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL- 97
           L+  +N   L+ +H+  II  GL  ++I S  LI  YA +     S  VF SI+  N++ 
Sbjct: 29  LSSAKNTPQLRTVHS-LIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVY 87

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L+ +I++ L+  G + + L  Y +M  + + P   T+P VI SC+ +LD   G  +H   
Sbjct: 88  LWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHA 147

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +++GF+S   +G+AL++ Y +     +N + + +         WNSLIS    NG  E +
Sbjct: 148 MEMGFESDLYIGNALIDMYSRF-VDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDA 206

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            +++   RM G   D  T+ ++L +   L +++ G  VH V        D+ +   LLSM
Sbjct: 207 LDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSM 266

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K   L +A+ +F KM+ KD V WN MI  Y Q G  + S++L M M+  GF  D+ + 
Sbjct: 267 YFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSI 325

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + +     +++ GK +H  ++ +G +      N LIDMY +C DL  A+++FD+ K 
Sbjct: 326 TSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKC 385

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K  V+W+S+I GY       E L  F  MK+E  + D VT + +L     +  +   + +
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGI 444

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H   +K G  +   +  ++   YAKCG  EM   L     + + DII+WN++I++     
Sbjct: 445 HCDVIKFGFEAELIIGNSLLDVYAKCG--EMDDLLKVFSYMSAHDIISWNTVIASSVHFD 502

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           D +  F++  +M+   + PD  T LG+L  C    +  +G+ I   + +S G+E +    
Sbjct: 503 DCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIG 561

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            +++ +  + G ++   ++ K M  K D   W  L+SA  M+ E + A
Sbjct: 562 NALIEMYSKCGSLENCIKVFKYMKEK-DVVTWTALISAFGMYGEGKKA 608



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 208/422 (49%), Gaps = 8/422 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL++    K+    R VH + + S     +  +  L+S Y+++     +  +F  +S  
Sbjct: 24  SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPT 83

Query: 298 DRV-VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           + V +WN +I A   +G   ++L     M     + D FT  + ++S + + ++E G  +
Sbjct: 84  NNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIV 143

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H + +  G +  + + N+LIDMY    DL+ AR +F+ +  +  VSW+S+I GY ++   
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFW 203

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            +AL ++ + ++ G+  D  T+ ++L AC ++ A++    +HG   K+G+     +   +
Sbjct: 204 EDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGL 263

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y K   +  A  +F   K+  KD +TWN+MI  YA+ G      KL+  M    V P
Sbjct: 264 LSMYFKFERLREARRVF--SKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-P 320

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D+++    + AC  +G ++ G+ + K +  S G+E        ++++  + G +  A+E+
Sbjct: 321 DMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE-NAGNYVLLSNIYAAAGK 655
                 K D+  W  L++     S      L + K++ ME + ++  +VLL +I++    
Sbjct: 380 FDTTKCK-DSVTWNSLING-YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLAD 437

Query: 656 WN 657
            N
Sbjct: 438 IN 439



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  G    LI+ ++L+D YA  G +    +VF+ +++ + + + T++ +   F +    
Sbjct: 448 VIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
             +  +M  + + P E T   ++  CS L     G++IH  + K GF+S   +G+AL+E 
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEM 567

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           Y KC G  EN      + FK +K +    W +LIS     G+ +K+ + F+ M + G   
Sbjct: 568 YSKC-GSLEN----CIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLP 622

Query: 232 DSGTLINLL 240
           DS   I  +
Sbjct: 623 DSVAFIAFI 631



 Score = 43.1 bits (100), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  YI   G   N+ + + LI+ Y+  G L    +VF  +   + + +  ++     
Sbjct: 543 KEIHG-YIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGM 601

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           +GE +K L  ++ M L  + P    +   I +CS           H+ +VK G   FD
Sbjct: 602 YGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS-----------HSGMVKEGLRFFD 648


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/614 (34%), Positives = 343/614 (55%), Gaps = 19/614 (3%)

Query: 57  ILHG-------LHQ-NLI-LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           ILHG       LH  N I L S+L  SYA  G + L++++F+ ++ P+  L+  I+K   
Sbjct: 100 ILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYV 159

Query: 108 KFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
             G +   L V+  M      +P + T+P VI++CS +     G  IH + +  GF S  
Sbjct: 160 DKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNM 219

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            V ++L+  Y+ C      + G+ ++ F  +  R    WN++IS   QNG+ E++  +F 
Sbjct: 220 FVQNSLLAMYMNC-----GKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFN 274

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M     E DS T+++ L S   LK LELG  VH +   +   + + V  AL+ MYS+  
Sbjct: 275 SMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCG 334

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +++A ++F +  +KD + W  MI+ Y  +G  K +L L   M   G   +  T  + +S
Sbjct: 335 GMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLS 394

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +++  ++ GK +HA V+R   D  V V  +LIDMY +C  ++ + ++F     K  V 
Sbjct: 395 ACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVP 454

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W++++ G + ++ + EA+ LF  M +E VE +  T  +++PA   +  L+ V  LH Y +
Sbjct: 455 WNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLV 514

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           + G  S  +V T +   Y+KCG ++ A ++FDE     KDII W+ +I+ Y  HG     
Sbjct: 515 RSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETA 574

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
             L+ QM  S ++P+ ITF  +L AC + GLV++G  +FK M E+Y   P   HY  +V+
Sbjct: 575 VLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVD 634

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG +DEA +L+K MPF+ +  +WG LL AC +H   EL E+ AE+L  +EPE+ GN
Sbjct: 635 LLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGN 694

Query: 643 YVLLSNIYAAAGKW 656
           Y+LL+NIYAA G+W
Sbjct: 695 YILLANIYAAVGRW 708



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 9/212 (4%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL+ C +   L+Q   +HA +++   L  ++++ + LID YA    +S S QVF   + 
Sbjct: 391 SLLSACASLCCLKQGKSLHA-WVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSM 449

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             ++ +  +L  L       + + ++K M ++ +     T+  VI + + L D      +
Sbjct: 450 KRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNL 509

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM---IQRKFKDLKSRWNSLISLAVQ 210
           H+ +V+ GF S   V   L++ Y KC G  +    +   I  K KD+   W+ LI+    
Sbjct: 510 HSYLVRSGFISKIAVITGLIDMYSKC-GSLDYAHKIFDEIPNKEKDIIV-WSVLIAGYGM 567

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           +G  E +  LF  M   G + +  T  ++L +
Sbjct: 568 HGHGETAVLLFNQMVHSGMQPNEITFTSVLHA 599


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/680 (33%), Positives = 360/680 (52%), Gaps = 9/680 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           HL Q HA+ I+LHG   ++ L + L    ++LG +  ++ +F S+  P+  L+  +++  
Sbjct: 35  HLAQTHAQ-IVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGF 93

Query: 107 SKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           S       +L V+  +   + + P   TY F I + S   D  +G  IH Q +  G DS 
Sbjct: 94  SVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSE 153

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK-LM 224
             +G  +V+ Y K     E+ + +  R  +     WN++IS   +N    +S ++F+ L+
Sbjct: 154 LLLGSNIVKMYFKF-WRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
                  D+ TL+++L +  EL+ L LG  +H +A  +       V T  +S+YSK   +
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           + A  LF +    D V +N MI  Y  +G  + SL L   ++ SG +    T ++ V   
Sbjct: 273 KMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVS 332

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
             +  I     +H   L++      SV  +L  +Y +  ++  ARK+FD    K++ SW+
Sbjct: 333 GHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWN 389

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI GY  +  + +A+ LF EM+      + VTI  IL AC  +GAL   K++H      
Sbjct: 390 AMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST 449

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
              S   V+TA+   YAKCG I  A  LFD   +  K+ +TWN+MIS Y  HG   +   
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFD--FMPKKNEVTWNTMISGYGLHGHGQEALT 507

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           ++++M  S + P  +TFL +L AC +AGLV+EG  IF  M   YG+EPS +HYA +V++L
Sbjct: 508 IFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDIL 567

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAGH+  A + ++ MP +P   VW  LL AC++H +T LA   +EKL  ++P+N G +V
Sbjct: 568 GRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHV 627

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSNI++A   +   A +R   + R L K PG + IEIG+  H F + DQSHPQ  AI+ 
Sbjct: 628 LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHE 687

Query: 705 ILGILELEIMEGRRESSEEL 724
            L  LE ++ E   +   EL
Sbjct: 688 KLEKLEGKMREAGYQPETEL 707


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/641 (32%), Positives = 358/641 (55%), Gaps = 7/641 (1%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA-LQ 125
           L +  +  +   G L  +  VF  ++  N   +  ++   +K G +++ + +Y +M  + 
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVG 190

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            + P   T+P V+R+C  + D   G+++H  VV+ G++   DV +AL+  Y+KC G  ++
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKC-GDVKS 249

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            + +  R  +     WN++IS   +NG   +  ELF  MR    + D  TL +++ +   
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L    LGR +H   + + F  D+SV  +L  MY    S  +A+ LF +M  KD V W  M
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTM 369

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           IS Y  +  P ++++    M +   + D  T  A +S+ +T+ +++ G ++H   ++   
Sbjct: 370 ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              V V N+LI+MY +C+ ++ A  IF ++  K V+SW+S+I G   +++  EAL    +
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQ 489

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           MK+  ++ + +T+   L AC  IGAL   K +H + ++ G+     +  A+   Y +CG 
Sbjct: 490 MKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A   F+ +K   KD+ +WN +++ Y++ G  S   +L+ +M +S VRPD ITF+ LL
Sbjct: 549 MNTAWSQFNSQK---KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLL 605

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
             C  + +V +G + F +M E YG  P+ +HYA +V+LLGRAG + EA + ++ MP  PD
Sbjct: 606 CGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
             VWG LL+AC++H + +L EL+A+ +  ++ ++ G Y+LL N+YA  GKW  VAK+R  
Sbjct: 665 PAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRM 724

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +++ GL    GCSW+E+   VH F + D+ HPQ   I T+L
Sbjct: 725 MKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVL 765



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 212/416 (50%), Gaps = 13/416 (3%)

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           NGK E++ +L   M+      D    + L+R     ++ E G  V+ +A+ S     + +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVEL 131

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSG 329
             A L+M+ +  +L DA  +F KMS+++   WN+++  Y + G+  E++ L   M+   G
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGG 191

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            + D++T    + +   + ++  GK++H +V+R G +  + V N+LI MY +C D+  AR
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +FD +  + ++SW++MI GY  +    E L LF  M+   V+ D +T+ +++ AC  +G
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
                + +H Y +  G     SV  ++   Y   G    A +LF   +++ KDI++W +M
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLF--SRMERKDIVSWTTM 369

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG----RIIFKEMK 565
           IS Y  +    +    Y  M Q  V+PD IT   +L+AC   G ++ G    ++  K   
Sbjct: 370 ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            SY    +     +++N+  +   +D+A ++  ++P K +   W  +++  ++++ 
Sbjct: 430 ISYVIVAN-----NLINMYSKCKCIDKALDIFHNIPRK-NVISWTSIIAGLRLNNR 479


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 347/623 (55%), Gaps = 11/623 (1%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV- 157
           + T+LK+LS+  ++E+ L  +  M      P   T P  +++C  L +   GE IH  V 
Sbjct: 9   WNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFVK 68

Query: 158 --VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
             V LG D +  VG +L+  YIKC    E  +   + +  D+ + W+S++S   +NG   
Sbjct: 69  KDVTLGSDLY--VGSSLIYMYIKCGRMIEALRMFDELEKPDIVT-WSSMVSGFEKNGSPY 125

Query: 216 KSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           ++ E F+ M M      D  TLI L+ +  +L +  LGR VH   +   F  DLS+  +L
Sbjct: 126 QAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSL 185

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L+ Y+K  + ++A  LF  +++KD + W+ +I+ Y Q+G   E+L +   M+  G   ++
Sbjct: 186 LNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNV 245

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T +  + + +   ++E G++ H   +R G + +V V  +L+DMY +C     A  +F  
Sbjct: 246 ATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSR 305

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEH 453
           +  K VVSW ++I G+  +  +  ++  FS M LE     D + ++ +L +C  +G LE 
Sbjct: 306 IPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQ 365

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K  H Y +K G +S   +  ++   Y++CG +  A ++F+   I  KD + W S+I+ Y
Sbjct: 366 AKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFN--GIALKDTVVWTSLITGY 423

Query: 514 AKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
             HG  ++  + +  M K S+V+P+ +TFL +L+AC +AGL+ EG  IFK M   Y   P
Sbjct: 424 GIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAP 483

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           + EHYA +V+LLGR G +D A E+ K MPF P  ++ G LL AC++H   E+AE  A+KL
Sbjct: 484 NLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKL 543

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +E  +AG Y+L+SN+Y   G+W  V K+R  ++ RG+KK    S IEI + VH F A 
Sbjct: 544 FELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVAD 603

Query: 693 DQSHPQADAIYTILGILELEIME 715
           D+ HP+ + +Y +L  L+L + E
Sbjct: 604 DELHPEKEPVYGLLKELDLHMKE 626



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 217/425 (51%), Gaps = 7/425 (1%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-V 258
           +WN+L+    +  + E+    F  M  +  + D+ TL   L++  EL+ +  G ++H  V
Sbjct: 8   QWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFV 67

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
                   DL V ++L+ MY K   + +A  +FD++   D V W+ M+S + ++G P ++
Sbjct: 68  KKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQA 127

Query: 319 LELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +E    MV  S    D  T I  VS+ + + N   G+ +H  V+R G    +S+ NSL++
Sbjct: 128 VEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLN 187

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            Y +      A  +F  +  K V+SWS++I  YV +  + EAL +F++M  +G E +  T
Sbjct: 188 CYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVAT 247

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           ++ +L AC     LE  +  H  +++ GL +   V+TA+   Y KC   E A  +F   +
Sbjct: 248 VLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFS--R 305

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEE 556
           I  KD+++W ++IS +  +G   +  + ++ M  +++ RPD I  + +L +C   G +E+
Sbjct: 306 IPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQ 365

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
            +  F      YG++ +    AS+V L  R G +  A ++   +  K D  VW  L++  
Sbjct: 366 AK-CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK-DTVVWTSLITGY 423

Query: 617 KMHSE 621
            +H +
Sbjct: 424 GIHGK 428



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 163/343 (47%), Gaps = 10/343 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           ++I  G   +L L ++L++ YA       +  +F  I   + + + T++    + G   +
Sbjct: 169 FVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAE 228

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            LLV+  M      P   T   V+++C+   D   G K H   ++ G ++   V  ALV+
Sbjct: 229 ALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVD 288

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDS 233
            Y+KC    E      +   KD+ S W +LIS    NG + +S E F +M +E     D+
Sbjct: 289 MYMKCFSPEEAYAVFSRIPRKDVVS-WVALISGFTLNGMAHRSIEEFSIMLLENNTRPDA 347

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
             ++ +L S  EL  LE  +  H   +   F  +  +  +L+ +YS+  SL +A  +F+ 
Sbjct: 348 ILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNG 407

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEW 352
           ++ KD VVW  +I+ Y   G   ++LE    MV+S   + +  T ++ +S+ S    I  
Sbjct: 408 IALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHE 467

Query: 353 GKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCARKI 391
           G ++   ++   +DY+++     +  L+D+     DL+ A +I
Sbjct: 468 GLRIFKLMV---NDYRLAPNLEHYAVLVDLLGRVGDLDTAIEI 507



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +++  W++++K      Q  E L  FS M  +  + D  T+   L AC  +  + + + +
Sbjct: 4   RSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMI 63

Query: 458 HGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           HG+  K + L S   V +++   Y KCG +  A  +FDE  ++  DI+TW+SM+S + K+
Sbjct: 64  HGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDE--LEKPDIVTWSSMVSGFEKN 121

Query: 517 GDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           G   Q  + + +M   SDV PD +T + L++AC        GR +   +    G+     
Sbjct: 122 GSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRR-GFSNDLS 180

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
              S++N   ++    EA  L K M  + D   W  ++ AC
Sbjct: 181 LVNSLLNCYAKSRAFKEAVNLFK-MIAEKDVISWSTVI-AC 219


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/669 (33%), Positives = 364/669 (54%), Gaps = 23/669 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVF------NSITSPNSLLYGTILKNLSKFGEYE 113
           GL ++ ++++ L+  YA  GLL  + +VF        + S NS + G +     + G + 
Sbjct: 193 GLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCV-----QNGMFL 247

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           + L ++++M          T   V++ C+ L     G ++HA ++K G + F+   +AL+
Sbjct: 248 EALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE-FNIQCNALL 306

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
             Y +C  G+ +    + R+  D     WNS++S  VQN    ++ + F  M   G   D
Sbjct: 307 VMYARC--GWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD 364

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
              +++LL +   L  L  GR VH  AV      DL +   L+ MY K  S+E +  +FD
Sbjct: 365 HACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFD 424

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +M  KD V W  +I+ Y QS    E++       + G + D     + + + S +K+I  
Sbjct: 425 RMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISL 484

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
            KQ+H+  +RNG    + + N +ID+Y EC ++  A  IF+ +  K +V+W+SM+  +  
Sbjct: 485 LKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAE 543

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +    EA+ LF +M   G++ D V ++ IL A   + +L   K +HG+ ++       +V
Sbjct: 544 NGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV 603

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +++   Y+ CG +  A ++FDE K   KD++ W +MI+A   HG   Q   ++ +M ++
Sbjct: 604 VSSLVDMYSGCGSMNYALKVFDEAKC--KDVVLWTAMINATGMHGHGKQAIYIFKRMLET 661

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            V PD ++FL LL AC ++ LV+EG+     M   Y  +P QEHYA +V+LLGR+G  +E
Sbjct: 662 GVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEE 721

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A + +K MP +P + VW  LL AC++H   ELA +  +KL+ +EP+N GNYVL+SN++A 
Sbjct: 722 AYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAE 781

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
            GKWN V ++RT + ++GL+K P CSWIEIG  VH F A D SH  + AI+  L     E
Sbjct: 782 MGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLA----E 837

Query: 713 IMEG-RRES 720
           I E  RRE 
Sbjct: 838 ITEKLRREG 846



 Score =  235 bits (599), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 163/609 (26%), Positives = 310/609 (50%), Gaps = 20/609 (3%)

Query: 49  QQIHARYIILHGLHQN--LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           +Q+HA  +    L  +    L++ L+  Y   G L  + ++F+ + +     +  ++   
Sbjct: 75  RQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGAC 134

Query: 107 SKFGEYEKTLLVYKQM----ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
              G   + + VY+ M     +    P   T   V+++C    D   G ++H   VK G 
Sbjct: 135 LSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGL 194

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           D    V +ALV  Y KC G  ++   + +  R  +D+ S WNS IS  VQNG   ++ +L
Sbjct: 195 DRSTLVANALVGMYAKC-GLLDSALRVFEWMRDGRDVAS-WNSAISGCVQNGMFLEALDL 252

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F+ M+ +G   +S T + +L+   EL  L  GR +H   +      ++  N ALL MY++
Sbjct: 253 FRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCN-ALLVMYAR 311

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              ++ A  +F ++ DKD + WN M+S Y Q+    E+++    MV++GF  D    ++ 
Sbjct: 312 CGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSL 371

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +S++  +  +  G+++HA  ++   D  + + N+L+DMY +C  + C+ ++FD ++ K  
Sbjct: 372 LSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDH 431

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW+++I  Y    +  EA+  F   + EG++VD + + +IL AC  + ++  +K +H Y
Sbjct: 432 VSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSY 491

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           +++ GL  L   N  I I Y +CG +  A  +F  E +D KDI+TW SM++ +A++G   
Sbjct: 492 AIRNGLLDLILKNRIIDI-YGECGEVCYALNIF--EMLDKKDIVTWTSMVNCFAENGLLH 548

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH-YAS 579
           +   L+ +M  + ++PD +  +G+L A      + +G+ I   +    G  P +    +S
Sbjct: 549 EAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIR--GKFPVEGAVVSS 606

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI--SMEP 637
           +V++    G M+ A ++  +   K D  +W  +++A  MH   + A    ++++   + P
Sbjct: 607 LVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSP 665

Query: 638 ENAGNYVLL 646
           ++     LL
Sbjct: 666 DHVSFLALL 674



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 227/465 (48%), Gaps = 27/465 (5%)

Query: 100 GTILKNLSKFGEYEKTLLVYKQMALQSMY----PAEDTYPFVIRSCSCLLDFISGEKIHA 155
           G  L+ L K G+  + L   +Q+A +S      P  D Y +V+   +       G ++HA
Sbjct: 23  GASLRQLCKDGDLREAL---RQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHA 79

Query: 156 QVVKLGFDSFDDVG---DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
             V  G    DD G     L+  Y KC G   +      R F  + +R    WN+LI   
Sbjct: 80  HAVATGALGDDDAGFLATKLLFMYGKC-GRLPDA----HRLFDGMPARTVFSWNALIGAC 134

Query: 209 VQNGKSEKSFELFKLMR----MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           + +G + ++  +++ MR    + GA  D  TL ++L++         G  VH +AV S  
Sbjct: 135 LSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGL 194

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLM 323
            +   V  AL+ MY+K   L+ A  +F+ M D +D   WN  IS   Q+G   E+L+L  
Sbjct: 195 DRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFR 254

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M   GF  + +T +  +   + +  +  G+++HA +L+ G+++ +   N+L+ MY  C 
Sbjct: 255 RMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCG 313

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            ++ A ++F  +  K  +SW+SM+  YV +    EA+  F EM   G   D   I+++L 
Sbjct: 314 WVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLS 373

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           A  ++G L + + +H Y++K  L+S   +   +   Y KC  +E +  +FD  +I  KD 
Sbjct: 374 AVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRI--KDH 431

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           ++W ++I+ YA+   +S+    +   ++  ++ D +    +L AC
Sbjct: 432 VSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC 476



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 157/320 (49%), Gaps = 11/320 (3%)

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVN---TALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
           +++  GR +H  AV +    D       T LL MY K   L DA  LFD M  +    WN
Sbjct: 69  RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWN 128

Query: 304 IMISAYYQSGFPKESLELLMCMVRS----GFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
            +I A   SG   E++ +   M  S    G   D  T  + + +     +   G ++H  
Sbjct: 129 ALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGL 188

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMIKGYVTHDQSLE 418
            +++G D    V N+L+ MY +C  L+ A ++F+ ++  + V SW+S I G V +   LE
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLE 248

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF  M+ +G  ++  T + +L  C  +  L H + LH   +K G       N A+ +
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCN-ALLV 307

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YA+CG ++ A  +F E  I  KD I+WNSM+S Y ++  +++    + +M Q+   PD 
Sbjct: 308 MYARCGWVDSALRVFRE--IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDH 365

Query: 539 ITFLGLLTACVNAGLVEEGR 558
              + LL+A  + G +  GR
Sbjct: 366 ACIVSLLSAVGHLGRLINGR 385


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/647 (32%), Positives = 350/647 (54%), Gaps = 5/647 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +L + + LID Y+    L  ++ VF  +++ +S+ + +++      G +E  L +Y
Sbjct: 151 GFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMY 210

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +  +  M P   T   V+ +C  L+    G  +H  + K+G      +G+ L+  Y K 
Sbjct: 211 HKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKF 270

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +   E  +   +   KD    WN++I    Q G+ E S +LF  M ++G   D  ++ + 
Sbjct: 271 ERLREARRVFSKMAVKD-SVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITST 328

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           +R+  +   L++G+ VH   + S F  D      L+ MY+K   L  A+ +FD    KD 
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +I+ Y QSG+ KE LE    M++   + D  T +  +S  S + +I  G+ +H +
Sbjct: 389 VTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCD 447

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           V++ G + ++ + NSL+D+Y +C +++   K+F  +    ++SW+++I   V  D     
Sbjct: 448 VIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            ++ +EM+ EG+  D  T++ ILP C  +      K +HGY  K G  S   +  A+   
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEM 567

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG +E   ++F   K   KD++TW ++ISA+  +G+  +  K +  M+ S V PD +
Sbjct: 568 YSKCGSLENCIKVFKYMK--EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSV 625

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
            F+  + AC ++G+V+EG   F  MK  Y  EP  EHYA +V+LL R+G + +A E +  
Sbjct: 626 AFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILS 685

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPDA +WG LLSAC+    T +A+  ++K++ +  ++ G YVL+SNIYA  GKW+ V
Sbjct: 686 MPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQV 745

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
             +R  ++ +GLKK PG SWIEI K V+ F   D+S  Q D +  +L
Sbjct: 746 KTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLL 792



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 173/588 (29%), Positives = 299/588 (50%), Gaps = 9/588 (1%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL- 97
           L+  +N   L+ +H+  II  GL  ++I S  LI  YA +     S  VF SI+  N++ 
Sbjct: 29  LSSAKNTPQLRTVHS-LIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVY 87

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L+ +I++ L+  G + + L  Y +M  + + P   T+P VI SC+ +LD   G  +H   
Sbjct: 88  LWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHA 147

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +++GF+S   +G+AL++ Y +     +N + + +         WNSLIS    NG  E +
Sbjct: 148 MEMGFESDLYIGNALIDMYSRF-VDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDA 206

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            +++   RM G   D  T+ ++L +   L +++ G  VH V        D+ +   LLSM
Sbjct: 207 LDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSM 266

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K   L +A+ +F KM+ KD V WN MI  Y Q G  + S++L M M+  GF  D+ + 
Sbjct: 267 YFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSI 325

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + +     +++ GK +H  ++ +G +      N LIDMY +C DL  A+++FD+ K 
Sbjct: 326 TSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKC 385

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K  V+W+S+I GY       E L  F  MK+E  + D VT + +L     +  +   + +
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGI 444

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H   +K G  +   +  ++   YAKCG  EM   L     + + DII+WN++I++     
Sbjct: 445 HCDVIKFGFEAELIIGNSLLDVYAKCG--EMDDLLKVFSYMSAHDIISWNTVIASSVHFD 502

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           D +  F++  +M+   + PD  T LG+L  C    +  +G+ I   + +S G+E +    
Sbjct: 503 DCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIG 561

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            +++ +  + G ++   ++ K M  K D   W  L+SA  M+ E + A
Sbjct: 562 NALIEMYSKCGSLENCIKVFKYMKEK-DVVTWTALISAFGMYGEGKKA 608



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 208/422 (49%), Gaps = 8/422 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL++    K+    R VH + + S     +  +  L+S Y+++     +  +F  +S  
Sbjct: 24  SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPT 83

Query: 298 DRV-VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           + V +WN +I A   +G   ++L     M     + D FT  + ++S + + ++E G  +
Sbjct: 84  NNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIV 143

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H + +  G +  + + N+LIDMY    DL+ AR +F+ +  +  VSW+S+I GY ++   
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFW 203

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            +AL ++ + ++ G+  D  T+ ++L AC ++ A++    +HG   K+G+     +   +
Sbjct: 204 EDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGL 263

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y K   +  A  +F   K+  KD +TWN+MI  YA+ G      KL+  M    V P
Sbjct: 264 LSMYFKFERLREARRVF--SKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-P 320

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D+++    + AC  +G ++ G+ + K +  S G+E        ++++  + G +  A+E+
Sbjct: 321 DMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEV 379

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE-NAGNYVLLSNIYAAAGK 655
                 K D+  W  L++     S      L + K++ ME + ++  +VLL +I++    
Sbjct: 380 FDTTKCK-DSVTWNSLING-YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLAD 437

Query: 656 WN 657
            N
Sbjct: 438 IN 439



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  G    LI+ ++L+D YA  G +    +VF+ +++ + + + T++ +   F +    
Sbjct: 448 VIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVG 507

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
             +  +M  + + P E T   ++  CS L     G++IH  + K GF+S   +G+AL+E 
Sbjct: 508 FQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEM 567

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           Y KC G  EN      + FK +K +    W +LIS     G+ +K+ + F+ M + G   
Sbjct: 568 YSKC-GSLEN----CIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLP 622

Query: 232 DSGTLINLL 240
           DS   I  +
Sbjct: 623 DSVAFIAFI 631



 Score = 42.4 bits (98), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  YI   G   N+ + + LI+ Y+  G L    +VF  +   + + +  ++     
Sbjct: 543 KEIHG-YIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGM 601

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           +GE +K L  ++ M L  + P    +   I +CS           H+ +VK G   FD
Sbjct: 602 YGEGKKALKAFQDMELSGVLPDSVAFIAFIFACS-----------HSGMVKEGLRFFD 648


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/587 (35%), Positives = 335/587 (57%), Gaps = 11/587 (1%)

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P V+++C  +     G++IH  V+K G D    VG+AL+  Y +C    E  + +  +  
Sbjct: 98  PSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC-ACVEYARLVFDKMM 156

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFK---LMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           +     W+++I    +N + + + EL +    M++  +E    +++NL   T  ++   +
Sbjct: 157 ERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR---M 213

Query: 252 GRIVHCVAVVSDFCKDLSV--NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           G+ +H   + +   + + V   TALL MY+K   L  A+ LF+ ++ K  V W  MI+  
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            +S   +E  +L + M       +  T ++ +        ++ GKQ+HA +LRNG    +
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
           ++  +L+DMY +C D+  AR +FDS + + V+ W++M+  Y   +   +A  LF +M+  
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           GV    VTI+++L  C   GAL+  K++H Y  K  +     +NTA+   YAKCG I  A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
           G LF E    S+DI  WN++I+ +A HG   +   ++ +M++  V+P+ ITF+GLL AC 
Sbjct: 454 GRLFIEAI--SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGLV EG+ +F++M  ++G  P  EHY  MV+LLGRAG +DEA E++K MP KP+  VW
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 571

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G L++AC++H   +L EL A +L+ +EPEN G  VL+SNIYAAA +W+  A +R  ++  
Sbjct: 572 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 631

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           G+KK PG S IE+   VHEF   DQSHPQ   I  +L  +  ++ E 
Sbjct: 632 GMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEA 678



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 238/475 (50%), Gaps = 14/475 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  +++  GL +++ + + L+  Y     +  ++ VF+ +   + + + T++++LS+
Sbjct: 114 KEIHG-FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSR 172

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             E++  L + ++M    + P+E     ++   +   +   G+ +HA V++   +    V
Sbjct: 173 NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGV 232

Query: 169 --GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
               AL++ Y KC        G+ ++ F  L  +    W ++I+  +++ + E+  +LF 
Sbjct: 233 PTTTALLDMYAKC-----GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFI 287

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M+ E    +  T+++L+       +L+LG+ +H   + + F   L++ TAL+ MY K +
Sbjct: 288 RMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCS 347

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            + +A+ LFD   ++D ++W  M+SAY Q+    ++  L   M  SG R    T ++ +S
Sbjct: 348 DIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
             +    ++ GK +H+ + +   +    ++ +L+DMY +C D+N A ++F    ++ +  
Sbjct: 408 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 467

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYS 461
           W+++I G+  H    EAL +F+EM+ +GV+ + +T I +L AC + G + E  K      
Sbjct: 468 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 527

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
              GL         +     + G ++ A E+     I    I+ W ++++A   H
Sbjct: 528 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIV-WGALVAACRLH 581



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 190/401 (47%), Gaps = 21/401 (5%)

Query: 25  QTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILH--GLHQNLILSSNLIDSYANLG 79
           Q RP   A    S++NL  +  +++    +HA Y+I +    H  +  ++ L+D YA  G
Sbjct: 190 QVRPSEVAM--VSMVNLFADTANMRMGKAMHA-YVIRNSNNEHMGVPTTTALLDMYAKCG 246

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            L L++Q+FN +T    + +  ++    +    E+   ++ +M  ++++P E T   +I 
Sbjct: 247 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIV 306

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
            C        G+++HA +++ GF     +  ALV+ Y KC     N + +    F   ++
Sbjct: 307 ECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCS-DIRNARAL----FDSTQN 361

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    W +++S   Q    +++F LF  MR  G      T+++LL       +L+LG+ V
Sbjct: 362 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 421

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H          D  +NTAL+ MY+K   +  A  LF +   +D  +WN +I+ +   G+ 
Sbjct: 422 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 481

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNS 374
           +E+L++   M R G + +  T I  + + S    +  GK++   ++   G   Q+  +  
Sbjct: 482 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 541

Query: 375 LIDMYCECEDLNCARKIFDS--VKTKTVVSWSSMIKGYVTH 413
           ++D+      L+ A ++  S  +K  T+V W +++     H
Sbjct: 542 MVDLLGRAGLLDEAHEMIKSMPIKPNTIV-WGALVAACRLH 581



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 149/297 (50%), Gaps = 15/297 (5%)

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEW---GKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           R+G   D      A S +     + W   GK++H  VL+ G D  V V N+L+ MY EC 
Sbjct: 84  RNGDDDDDVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECA 143

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTH---DQSLEALRLFSEMKLEGVEVDFVTIIN 440
            +  AR +FD +  + VVSWS+MI+    +   D +LE +R  + M++   EV  V+++N
Sbjct: 144 CVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVN 203

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--NTAIFISYAKCGCIEMAGELFDEEKI 498
           +     N   +   K +H Y ++   N    V   TA+   YAKCG + +A +LF+   +
Sbjct: 204 LFADTAN---MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFN--GL 258

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             K +++W +MI+   +     +  KL+ +M++ ++ P+ IT L L+  C   G ++ G+
Sbjct: 259 TQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGK 318

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            +   +  + G+  S     ++V++ G+   +  AR L  D     D  +W  +LSA
Sbjct: 319 QLHAYILRN-GFSVSLALATALVDMYGKCSDIRNARALF-DSTQNRDVMIWTAMLSA 373


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/694 (32%), Positives = 378/694 (54%), Gaps = 18/694 (2%)

Query: 30  MTATHSFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           +T TH   L+N C    + +H ++IH R+++      ++IL ++++  Y   G L  ++ 
Sbjct: 99  VTYTH---LINACSSLRSLEHGRKIH-RHMLTCNYQPDMILQNHILSMYGKCGSLKEARN 154

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           +F+S+   N + + +++   S++GE +  + +Y QM      P   T+  +++SCS L D
Sbjct: 155 MFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDD 214

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
           F    ++HA V+K  F +     +AL+  Y K     +      +   KDL S W S+I+
Sbjct: 215 FKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLIS-WGSMIA 273

Query: 207 LAVQNGKSEKSFELFKLMRMEGA----EFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
              Q G   ++   F+ M  +      EF  G+  +     +E    + GR +H + +  
Sbjct: 274 GFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP---DCGRQIHGLCIKF 330

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               DL    +L  MY+K   LE A+ +F  +   D V WN +I+ +      KES    
Sbjct: 331 GLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFF 390

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M  +G   +  T ++ + + S    +  G Q+H+ +++ G +  + V NSL+ MY +C
Sbjct: 391 SQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKC 450

Query: 383 EDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
            +LN A ++F+ +  K  +VSW++++   +  +Q+ E LRL   M    ++ D VT+ N+
Sbjct: 451 SNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNV 510

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L +   I + E    +H + MK GLN   SV+ A+   Y KCG +E A ++FD   I + 
Sbjct: 511 LVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDS--IGNP 568

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           DII+W+S+I  YA+ G   + F+L+  M+   V+P+ ITF+G+LTAC + G+VEEG  ++
Sbjct: 569 DIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY 628

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + M+E Y   P++EH + MV+LL RAG +D A + ++ MPF PD  VW  LL+ACK+H  
Sbjct: 629 RTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGN 688

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            E+ +  AE ++ ++P N+   V+L NI+A++G W   A++R+ +R   + K PG SWIE
Sbjct: 689 LEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIE 748

Query: 682 IGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           I   VH F A D  HP+   IYT+L  L L+I++
Sbjct: 749 IKDKVHVFLAEDNLHPERGKIYTMLEELMLQILD 782



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 245/478 (51%), Gaps = 17/478 (3%)

Query: 202 NSLISLAVQNGKSE--KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           + +ISL  +N   E  K+F++F+  +   +   S T  +L+ +   L+SLE GR +H   
Sbjct: 67  DKIISLCKKNLHREALKAFDIFQ--KCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHM 124

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +  ++  D+ +   +LSMY K  SL++A+ +FD M  K+ V W  MIS Y + G    ++
Sbjct: 125 LTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAI 184

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L + M+RSG   D FT  + V S S + + +  +Q+HA+VL++     +   N+LI MY
Sbjct: 185 TLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMY 244

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVDFVTI 438
            +   +  A  +F  +  K ++SW SMI G+      LEAL  F EM  + V + +    
Sbjct: 245 TKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVF 304

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +   AC  +   +  + +HG  +K GL S      ++   YAKCG +E A  +F    I
Sbjct: 305 GSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF--YHI 362

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           +  D++ WN++I+ +A   +  +    ++QM+ + + P+ +T L LL AC    ++  G 
Sbjct: 363 EKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGI 422

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +   + +  G+        S++++  +  ++++A ++ +D+  K D   W  LL+AC  
Sbjct: 423 QVHSYIVK-MGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481

Query: 619 HSET-ELAELTAEKLIS-MEPENAGNYVLLSNIYAAAGK---WNGVAKMRTFLRDRGL 671
            ++  E+  LT     S ++P+    +V L+N+  ++G+   +   +++  F+   GL
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPD----HVTLTNVLVSSGQIASYEVGSQIHCFIMKSGL 535


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/660 (32%), Positives = 371/660 (56%), Gaps = 6/660 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H  +++  G  Q++ + ++LID Y+  G +  ++ VF+ ++   ++ + TI+   +K 
Sbjct: 150 QLHG-FVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKC 208

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G    +L ++ QM   ++ P       V+ +CS L     G++IHA V++ G +    V 
Sbjct: 209 GRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 268

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           + L++FY KC+      K   Q   K++ S W ++IS  +QN    ++ +LF  M   G 
Sbjct: 269 NVLIDFYTKCNRVKAGRKLFDQMVVKNIIS-WTTMISGYMQNSFDWEAMKLFGEMNRLGW 327

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + D     ++L S    ++LE GR VH   + ++   D  V   L+ MY+K   L DAK 
Sbjct: 328 KPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKK 387

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +FD M++++ + +N MI  Y       E+LEL   M    F   L T ++ +   +++  
Sbjct: 388 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 447

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E  KQ+H  +++ G    +   ++LID+Y +C  +  AR +F+ +  K +V W++M  G
Sbjct: 448 LELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 507

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y  H ++ EAL+L+S ++    + +  T   ++ A  N+ +L H +  H   +K+GL+  
Sbjct: 508 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 567

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   YAKCG IE A ++F+      +D++ WNSMIS +A+HG+  +   ++ +M
Sbjct: 568 PFVTNALVDMYAKCGSIEEARKMFNSSIW--RDVVCWNSMISTHAQHGEAEEALGMFREM 625

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
            +  ++P+ +TF+ +L+AC +AG VE+G   F  M   +G +P  EHYA +V+LLGR+G 
Sbjct: 626 MKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGK 684

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + EA+E ++ MP +P A VW  LLSAC++    EL +  AE  IS +P+++G+Y+LLSNI
Sbjct: 685 LFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNI 744

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +A+ G W  V K+R  +    + K PG SWIE+   V+ F A D +H +AD I ++L IL
Sbjct: 745 FASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD-IGSVLDIL 803



 Score =  255 bits (651), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 170/602 (28%), Positives = 314/602 (52%), Gaps = 10/602 (1%)

Query: 27  RPHMTATHSFSLLNLCENPQ-HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           RP      +   L++  NP  H + IH + II+ GL  +  L++ LI+  +    +  ++
Sbjct: 24  RPKRREFANLLQLSISRNPIIHYKIIHGQ-IIVSGLQSDTFLANILINVCSKSDRVDNAR 82

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCL 144
            VF+ +   N + + +++   S+ G  E+ L+V+  +  +S  +P E     VIR+C+ L
Sbjct: 83  VVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQL 142

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                G ++H  VV+ GFD    VG +L++FY K +G  E  + +  +  +     W ++
Sbjct: 143 GVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSK-NGNIEEARLVFDQLSEKTAVTWTTI 201

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I+   + G+S  S ELF  MR      D   + ++L +   L+ LE G+ +H   +    
Sbjct: 202 IAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGT 261

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+SV   L+  Y+K   ++  + LFD+M  K+ + W  MIS Y Q+ F  E+++L   
Sbjct: 262 EMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGE 321

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M R G++ D F   + ++S  + + +E G+Q+HA  ++   +    V N LIDMY +   
Sbjct: 322 MNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL 381

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           L  A+K+FD +  + V+S+++MI+GY + ++  EAL LF EM++       +T +++L  
Sbjct: 382 LIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGV 441

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
             ++ ALE  K +HG  +K G++      +A+   Y+KC  ++ A  +F+E  ++ KDI+
Sbjct: 442 SASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEE--MNEKDIV 499

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WN+M   Y +H +  +  KLY+ ++ S  +P+  TF  L+TA  N   +  G+    ++
Sbjct: 500 VWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQL 559

Query: 565 -KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
            K    + P   +  ++V++  + G ++EAR++     ++ D   W  ++S    H E E
Sbjct: 560 VKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAE 616

Query: 624 LA 625
            A
Sbjct: 617 EA 618


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/667 (32%), Positives = 366/667 (54%), Gaps = 3/667 (0%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           H++ IHA+ II + +     L++ LI  Y++LG L  ++ VF+  + P + +   ++   
Sbjct: 62  HVKSIHAQ-IIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGF 120

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            +  ++ +   +++ M    +     T  F +++C+ LLD   G +I    V+ GF    
Sbjct: 121 LRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHL 180

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            VG ++V F +K     + +K       KD+   WNS+I   VQ G   +S ++F  M  
Sbjct: 181 YVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVC-WNSIIGGYVQKGLFWESIQMFLEMIG 239

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G      T+ NLL++  +    ++G   H   +      D+ V T+L+ MYS L     
Sbjct: 240 GGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGS 299

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A ++FD M  +  + WN MIS Y Q+G   ES  L   +V+SG   D  T ++ +   S 
Sbjct: 300 AALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQ 359

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
             ++E G+ +H+ ++R   +  + +  +++DMY +C  +  A  +F  +  K V++W++M
Sbjct: 360 TSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAM 419

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           + G   +  + +AL+LF +M+ E V  + VT+++++  C ++G+L   + +H + ++ G 
Sbjct: 420 LVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGY 479

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
              + + +A+   YAKCG I  A +LF+ E    KD+I  NSMI  Y  HG       +Y
Sbjct: 480 AFDAVITSALIDMYAKCGKIHSAEKLFNNE-FHLKDVILCNSMIMGYGMHGHGRYALGVY 538

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
           ++M +  ++P+  TF+ LLTAC ++GLVEEG+ +F  M+  +   P  +HYA +V+L  R
Sbjct: 539 SRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSR 598

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG ++EA ELVK MPF+P   V   LLS C+ H  T +    A++LIS++  N+G YV+L
Sbjct: 599 AGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVML 658

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SNIYA A KW  V  +R  +R +G+KK PG S IE+G  V+ F+A+D SHP    IY +L
Sbjct: 659 SNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLL 718

Query: 707 GILELEI 713
             L LE+
Sbjct: 719 ENLRLEV 725



 Score = 44.3 bits (103), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 4/166 (2%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L HVK +H   +K  +++ S +   +   Y+  G +  A  +FD+  +    +   N+M
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVC--NAM 116

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ + ++    +  +L+  M   D+  +  T +  L AC +    E G  I +      G
Sbjct: 117 IAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRR-G 175

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +       +SMVN L + G++ +A+++   MP K D   W  ++  
Sbjct: 176 FHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEK-DVVCWNSIIGG 220


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/648 (33%), Positives = 341/648 (52%), Gaps = 5/648 (0%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
            L L + ++      G +  + +VF  +   +   +  ++    K G  E+ L +Y +M 
Sbjct: 130 GLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRML 189

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              M P   T+P V+R+C  + D+  G ++HA V++ GF    DV +ALV  Y KC    
Sbjct: 190 WAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              K        D  S WN++I+   +N + E   ELF  M     + +  T+ ++  ++
Sbjct: 250 AARKVFDGMAVTDCIS-WNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVAS 308

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L  +   + +H  AV   F  D++   +L+ MY+ L  + DA  +F +M  KD + W 
Sbjct: 309 GMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWT 368

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS Y ++GFP ++LE+   M       D  T  +A+++ + +  ++ G ++H      
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNK 428

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    V V N+L++MY + + ++ A ++F  +  K VVSWSSMI G+  + +S EAL  F
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYF 488

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M L  V+ + VT I  L AC   GAL   K +H Y ++ G+ S   V  A+   Y KC
Sbjct: 489 RYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKC 547

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G    A   F       KD+++WN M+S +  HG       L+ QM +    PD +TF+ 
Sbjct: 548 GQTSYAWAQFSVH--SEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVA 605

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL AC  AG+V +G  +F  M E +   P+ +HYA MV+LL R G + EA  L+  MP K
Sbjct: 606 LLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK 665

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PDA VWG LL+ C++H   EL EL A+ ++ +EP +   +VLL ++Y  AGKW  VA++R
Sbjct: 666 PDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVR 725

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILE 710
             +R++GL++  GCSW+E+  + H F   D+SHPQ   I  +L GI E
Sbjct: 726 KTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYE 773



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 195/401 (48%), Gaps = 3/401 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA +++  G    + + + L+  YA  G +  +++VF+ +   + + +  ++    +
Sbjct: 217 REVHA-HVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFE 275

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             E E  L ++  M    + P   T   V  +   L +    +++H   VK GF      
Sbjct: 276 NHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAF 335

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L++ Y       +  K   + + KD  S W ++IS   +NG  +K+ E++ LM +  
Sbjct: 336 CNSLIQMYTSLGRMGDAGKIFSRMETKDAMS-WTAMISGYEKNGFPDKALEVYALMELHN 394

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+ + L +   L  L++G  +H +A    F + + V  ALL MY+K   ++ A 
Sbjct: 395 VSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAI 454

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F  M++KD V W+ MI+ +  +    E+L     M+    + +  T IAA+S+ +   
Sbjct: 455 EVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATG 513

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  GK++HA VLR G   +  V N+L+D+Y +C   + A   F     K VVSW+ M+ 
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           G+V H     AL LF++M   G   D VT + +L AC   G
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAG 614



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 180/408 (44%), Gaps = 12/408 (2%)

Query: 12  QSGHVKFLRFPANQTRPHMTATHSFSLLN-LCENPQHLQQIHARYIILHGLHQNLILSSN 70
           ++G   FL    N+ +P++    S ++ + +       +++H  + +  G   ++   ++
Sbjct: 280 EAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHG-FAVKRGFAIDVAFCNS 338

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           LI  Y +LG +  + ++F+ + + +++ +  ++    K G  +K L VY  M L ++ P 
Sbjct: 339 LIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPD 398

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEK 187
           + T    + +C+CL     G K+H      GF  +  V +AL+E Y K    D   E  K
Sbjct: 399 DVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFK 458

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
            M +   KD+ S W+S+I+    N +S ++   F+ M +   + +S T I  L +     
Sbjct: 459 FMAE---KDVVS-WSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSACAATG 513

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L  G+ +H   +      +  V  ALL +Y K      A   F   S+KD V WNIM+S
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM-HANVLRNGSD 366
            +   G    +L L   MV  G   D  T +A + + S    +  G ++ H    +    
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIV 633

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
             +  +  ++D+      L  A  + + +  K     W +++ G   H
Sbjct: 634 PNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIH 681


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 340/601 (56%), Gaps = 6/601 (0%)

Query: 114  KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
            ++LL++++M      P   T+PFV ++C+ L D    E +HA ++K  F S   VG A V
Sbjct: 641  ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 700

Query: 174  EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
            + ++KC+   +    + +R  +   + WN+++S   Q+G ++K+F LF+ MR+     DS
Sbjct: 701  DMFVKCNS-VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 759

Query: 234  GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
             T++ L++S    KSL+L   +H V +       ++V    +S Y K   L+ AK++F+ 
Sbjct: 760  VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 819

Query: 294  MSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
            +   DR V  WN M  AY   G   ++  L   M+R  F+ DL T I   +S    + + 
Sbjct: 820  IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 879

Query: 352  WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
             G+ +H++ +  G+D  +   N+ I MY + ED   AR +FD + ++T VSW+ MI GY 
Sbjct: 880  QGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYA 939

Query: 412  THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                  EAL LF  M   G + D VT+++++  C   G+LE  K++   +   G    + 
Sbjct: 940  EKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNV 999

Query: 472  -VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
             +  A+   Y+KCG I  A ++FD      K ++TW +MI+ YA +G + +  KL+++M 
Sbjct: 1000 MICNALIDMYSKCGSIHEARDIFD--NTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMI 1057

Query: 531  QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              D +P+ ITFL +L AC ++G +E+G   F  MK+ Y   P  +HY+ MV+LLGR G +
Sbjct: 1058 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 1117

Query: 591  DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            +EA EL+++M  KPDA +WG LL+ACK+H   ++AE  AE L ++EP+ A  YV ++NIY
Sbjct: 1118 EEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIY 1177

Query: 651  AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
            AAAG W+G A++R+ ++ R +KK PG S I++    H F   +  H + + IY  L  L 
Sbjct: 1178 AAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGLS 1237

Query: 711  L 711
            L
Sbjct: 1238 L 1238



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 211/408 (51%), Gaps = 10/408 (2%)

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
            WN  I  AV      +S  LF+ M+  G E ++ T   + ++   L  +    +VH   +
Sbjct: 626  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 685

Query: 261  VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             S F  D+ V TA + M+ K  S++ A  +F++M ++D   WN M+S + QSG   ++  
Sbjct: 686  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 745

Query: 321  LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
            L   M  +    D  T +  + S S  K+++  + MHA  +R G D QV+V N+ I  Y 
Sbjct: 746  LFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYG 805

Query: 381  ECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
            +C DL+ A+ +F+++    +TVVSW+SM K Y    ++ +A  L+  M  E  + D  T 
Sbjct: 806  KCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTF 865

Query: 439  INILPACVNIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFIS-YAKCGCIEMAGELFDEE 496
            IN+  +C N   L   + +H +++ LG +  + ++NT  FIS Y+K      A  LFD  
Sbjct: 866  INLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINT--FISMYSKSEDTCSARLLFD-- 921

Query: 497  KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
             + S+  ++W  MIS YA+ GD  +   L+  M +S  +PDL+T L L++ C   G +E 
Sbjct: 922  IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLET 981

Query: 557  GRIIFKEMKESYGYEPSQEHYA-SMVNLLGRAGHMDEARELVKDMPFK 603
            G+ I     + YG +        +++++  + G + EAR++  + P K
Sbjct: 982  GKWI-DARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK 1028



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 13/313 (4%)

Query: 48   LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL--YGTILKN 105
            L+ +HA  I L G+   + +++  I +Y   G L  ++ VF +I   +  +  + ++ K 
Sbjct: 778  LEAMHAVGIRL-GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKA 836

Query: 106  LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
             S FGE      +Y  M  +   P   T+  +  SC        G  IH+  + LG D  
Sbjct: 837  YSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQD 896

Query: 166  DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             +  +  +  Y K +     +    +  F  + SR    W  +IS   + G  +++  LF
Sbjct: 897  IEAINTFISMYSKSE-----DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALF 951

Query: 222  KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSK 280
              M   G + D  TL++L+    +  SLE G+ +   A +    +D + +  AL+ MYSK
Sbjct: 952  HAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSK 1011

Query: 281  LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              S+ +A+ +FD   +K  V W  MI+ Y  +G   E+L+L   M+   ++ +  T +A 
Sbjct: 1012 CGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAV 1071

Query: 341  VSSISTMKNIEWG 353
            + + +   ++E G
Sbjct: 1072 LQACAHSGSLEKG 1084



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R+++      +V +W+  I+  V  +  +E+L LF EMK  G E +  T   +  AC  +
Sbjct: 612 RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 671

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             +   + +H + +K    S   V TA    + KC  ++ A ++F  E++  +D  TWN+
Sbjct: 672 ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVF--ERMPERDATTWNA 729

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           M+S + + G   + F L+ +M+ +++ PD +T + L+ + 
Sbjct: 730 MLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSA 769


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/648 (33%), Positives = 341/648 (52%), Gaps = 5/648 (0%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
            L L + ++      G +  + +VF  +   +   +  ++    K G  E+ L +Y +M 
Sbjct: 130 GLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRML 189

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              M P   T+P V+R+C  + D+  G ++HA V++ GF    DV +ALV  Y KC    
Sbjct: 190 WAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              K        D  S WN++I+   +N + E   ELF  M     + +  T+ ++  ++
Sbjct: 250 AARKVFDGMAVTDCIS-WNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVAS 308

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L  +   + +H  AV   F  D++   +L+ MY+ L  + DA  +F +M  KD + W 
Sbjct: 309 GMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWT 368

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS Y ++GFP ++LE+   M       D  T  +A+++ + +  ++ G ++H      
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNK 428

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    V V N+L++MY + + ++ A ++F  +  K VVSWSSMI G+  + +S EAL  F
Sbjct: 429 GFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYF 488

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M L  V+ + VT I  L AC   GAL   K +H Y ++ G+ S   V  A+   Y KC
Sbjct: 489 RYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKC 547

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G    A   F       KD+++WN M+S +  HG       L+ QM +    PD +TF+ 
Sbjct: 548 GQTSYAWAQFSVHS--EKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVA 605

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL AC  AG+V +G  +F  M E +   P+ +HYA MV+LL R G + EA  L+  MP K
Sbjct: 606 LLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK 665

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PDA VWG LL+ C++H   EL EL A+ ++ +EP +   +VLL ++Y  AGKW  VA++R
Sbjct: 666 PDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVR 725

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILE 710
             +R++GL++  GCSW+E+  + H F   D+SHPQ   I  +L GI E
Sbjct: 726 KTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYE 773



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 195/401 (48%), Gaps = 3/401 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA +++  G    + + + L+  YA  G +  +++VF+ +   + + +  ++    +
Sbjct: 217 REVHA-HVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFE 275

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             E E  L ++  M    + P   T   V  +   L +    +++H   VK GF      
Sbjct: 276 NHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAF 335

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L++ Y       +  K   + + KD  S W ++IS   +NG  +K+ E++ LM +  
Sbjct: 336 CNSLIQMYTSLGRMGDAGKIFSRMETKDAMS-WTAMISGYEKNGFPDKALEVYALMELHN 394

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+ + L +   L  L++G  +H +A    F + + V  ALL MY+K   ++ A 
Sbjct: 395 VSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAI 454

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F  M++KD V W+ MI+ +  +    E+L     M+    + +  T IAA+S+ +   
Sbjct: 455 EVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATG 513

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  GK++HA VLR G   +  V N+L+D+Y +C   + A   F     K VVSW+ M+ 
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           G+V H     AL LF++M   G   D VT + +L AC   G
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAG 614



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 180/408 (44%), Gaps = 12/408 (2%)

Query: 12  QSGHVKFLRFPANQTRPHMTATHSFSLLN-LCENPQHLQQIHARYIILHGLHQNLILSSN 70
           ++G   FL    N+ +P++    S ++ + +       +++H  + +  G   ++   ++
Sbjct: 280 EAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHG-FAVKRGFAIDVAFCNS 338

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           LI  Y +LG +  + ++F+ + + +++ +  ++    K G  +K L VY  M L ++ P 
Sbjct: 339 LIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPD 398

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEK 187
           + T    + +C+CL     G K+H      GF  +  V +AL+E Y K    D   E  K
Sbjct: 399 DVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFK 458

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
            M +   KD+ S W+S+I+    N +S ++   F+ M +   + +S T I  L +     
Sbjct: 459 FMAE---KDVVS-WSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSACAATG 513

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L  G+ +H   +      +  V  ALL +Y K      A   F   S+KD V WNIM+S
Sbjct: 514 ALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLS 573

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM-HANVLRNGSD 366
            +   G    +L L   MV  G   D  T +A + + S    +  G ++ H    +    
Sbjct: 574 GFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIV 633

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
             +  +  ++D+      L  A  + + +  K     W +++ G   H
Sbjct: 634 PNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIH 681


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/717 (32%), Positives = 369/717 (51%), Gaps = 64/717 (8%)

Query: 55  YIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           + +  G+ Q   +S N ++  YA  G + ++Q++F+++   + + + +++      G++ 
Sbjct: 97  FKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHR 156

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           K + V+ QM          T+  V++SCS L D   G +IH   VK+GFD     G AL+
Sbjct: 157 KVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALL 216

Query: 174 EFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
           + Y KC   D   +    M ++ +      W+++I+  VQN       ELFK M+  G  
Sbjct: 217 DMYAKCKKLDCSIQFFHSMPEKNW----VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVG 272

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
               T  ++ RS   L +L LG  +H  A+ +DF  D+ + TA L MY K  +L DA+ L
Sbjct: 273 VSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKL 332

Query: 291 FDKMSDKDRVVWNIMISAYYQS------------------GFPKESLELL---------- 322
           F+ + + +   +N +I  Y +S                     K  LE L          
Sbjct: 333 FNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 392

Query: 323 ----MCMVRS-----GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS--V 371
               +C+  +     G    L  A      + +   + W   + A+      +  +S  +
Sbjct: 393 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFI 452

Query: 372 HN---------------SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           HN               +LIDMY +C  +  A K+ D +  +TVVSW+++I G+    QS
Sbjct: 453 HNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQS 512

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            EA + FS+M   GV+ D  T   IL  C N+  +E  K +H   +K  L S + +++ +
Sbjct: 513 EEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTL 572

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y+KCG ++    +F  EK  ++D +TWN+M+  YA+HG   +  K++  M+  +V+P
Sbjct: 573 VDMYSKCGNMQDFQLIF--EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKP 630

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           +  TFL +L AC + GLVE+G   F  M  +YG +P  EHY+ +V+++GR+G + +A EL
Sbjct: 631 NHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALEL 690

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           ++ MPF+ DA +W  LLS CK+H   E+AE  A  ++ +EPE++  YVLLSNIYA AG W
Sbjct: 691 IEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMW 750

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           N V K+R  +R  GLKK PGCSWIEI   VH F   D++HP++  IY  L +L  E+
Sbjct: 751 NEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEM 807



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 139/559 (24%), Positives = 251/559 (44%), Gaps = 85/559 (15%)

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           KTL +    + Q+    + T+  + + CS       G++ HA+++   F     V + L+
Sbjct: 25  KTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLI 84

Query: 174 EFYIKC----------DG--------------GF--ENEKGMIQRKFKDLKSR----WNS 203
           + YIKC          DG              G+    + G+ Q+ F  +  R    WNS
Sbjct: 85  QMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNS 144

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           LIS  + NG   K  ++F  M   G  FD  T   +L+S   L+    G  +H +AV   
Sbjct: 145 LISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMG 204

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D+   +ALL MY+K   L+ +   F  M +K+ V W+ +I+   Q+   +  LEL  
Sbjct: 205 FDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFK 264

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M ++G      T  +   S + +  +  G Q+H + L+      V +  + +DMY +C 
Sbjct: 265 EMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCN 324

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           +L+ A+K+F+S+    + S++++I GY   D+              G+ +D V++     
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYNAIIVGYARSDK--------------GLGLDEVSLSGAFR 370

Query: 444 ACVNI-GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           AC  I G LE ++ +HG SMK    S   V  AI   Y KCG +  A  +F+E  + S+D
Sbjct: 371 ACAVIKGDLEGLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE--MVSRD 427

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            ++WN++I+A+ ++G+  +   L+   +    R  L +F+G+                  
Sbjct: 428 AVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGI------------------ 469

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
                           +++++  + G M++A +L  D   +     W  ++S   +  ++
Sbjct: 470 ----------------ALIDMYSKCGMMEKAEKL-HDRLAEQTVVSWNAIISGFSLQKQS 512

Query: 623 ELAELTAEKLISM--EPEN 639
           E A+ T  K++ M  +P+N
Sbjct: 513 EEAQKTFSKMLEMGVDPDN 531


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/685 (31%), Positives = 376/685 (54%), Gaps = 16/685 (2%)

Query: 37  SLLNLCENPQHLQQIHARYIILH----GLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           +LL  C + +++   H R +  H    G  QN ++  +LI  YA  G +  +QQVF  + 
Sbjct: 9   ALLQRCSSAKNVD--HGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILE 66

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             +   +  ++    + G+Y++ L ++ QM  + + P + TY  ++ +C+       G +
Sbjct: 67  RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGME 126

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCD---GGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           IH Q+++ GF+    VG AL+  Y KC    G +++ K +  R   D+ S W ++I+  V
Sbjct: 127 IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR---DVVS-WTAMIAACV 182

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           Q+ +   +  L++ M+++G   +  TL  +  +  +   L  G+ V+ +        D+ 
Sbjct: 183 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVR 242

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V  + ++M+     L DA+ LF+ M D+D V WNI+I+ Y Q+    E++ L   + + G
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG 302

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            +A+  T +  ++  +++ ++  GK +H  V   G D    V  +L+ +Y  CE    A 
Sbjct: 303 VKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAW 362

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           KIF  + +K V++W+ M   Y  +    EAL+LF EM+LEG      T++ +L  C ++ 
Sbjct: 363 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 422

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL+  + +H + ++        V TA+   Y KCG +  A  +F  EK+  +DI+ WNSM
Sbjct: 423 ALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVF--EKMAKRDILVWNSM 480

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           + AYA+HG + +  +L+ QM+   V+ D ++F+ +L+A  ++G V +G   F  M + + 
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 540

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAELT 628
             P+ E Y  +V+LLGRAG + EA ++V  +    PD  +W  LL AC+ H++T+ A+  
Sbjct: 541 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAA 600

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AE+++  +P ++G YV+LSN+YAAAG W+GV +MR  +R RG+KK PG S IEI   VHE
Sbjct: 601 AEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHE 660

Query: 689 FWAADQSHPQADAIYTILGILELEI 713
           F   D+SHP+   IY  L +L  E+
Sbjct: 661 FLEGDRSHPRRHPIYAELDVLNSEM 685



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 141/277 (50%), Gaps = 4/277 (1%)

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           +A +   S+ KN++ G+++H +V   G +    V   LI MY +C  +  A+++F+ ++ 
Sbjct: 8   VALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILER 67

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K V +W+ MI  Y        AL +F +M+ E V    VT + IL AC +  +L+    +
Sbjct: 68  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 127

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           HG  ++ G      V TA+   Y KCG +  A + F  ++++ +D+++W +MI+A  +H 
Sbjct: 128 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSF--KRLEHRDVVSWTAMIAACVQHD 185

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
            ++    LY +M+   V P+ IT   +  A  +   + EG+ ++  +  S   E      
Sbjct: 186 QFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYG-LVSSGVMESDVRVM 244

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            S VN+ G AG + +AR L +DM    D   W  +++
Sbjct: 245 NSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVIT 280



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 107/226 (47%), Gaps = 10/226 (4%)

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D    + +L  C +   ++H + +H +    G    + V   +   YA+CG +  A ++F
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E ++ KD+  W  MI  Y + GD+ +   ++ QM++ DV P  +T++ +L AC +   
Sbjct: 63  --EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +++G  I  ++ +  G+E       +++N+  + G +  A +  K +  + D   W  ++
Sbjct: 121 LKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMI 178

Query: 614 SACKMHSETELAELTAEK--LISMEPENAGNYVLLSNIYAAAGKWN 657
           +AC  H +  LA     +  L  + P    N + L  ++ A G  N
Sbjct: 179 AACVQHDQFALARWLYRRMQLDGVVP----NKITLYTVFNAYGDPN 220


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/658 (32%), Positives = 366/658 (55%), Gaps = 8/658 (1%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA-LQ 125
           L +  +  +   G L  +  VF  ++  N   +  ++   +K G +++ + +Y +M  + 
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVG 190

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            + P   T+P V+R+C  + D   G ++H  VV+ G++   DV +AL+  Y+KC G  ++
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKC-GDVKS 249

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            + +  R  +     WN++IS   +NG   +  +LF  MR    + D  TL +++ +   
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L    LGR +H   + + F  D+SV  +L  MY    S  +A+ LF +M  KD V W  M
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTM 369

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           IS Y  +  P+++++    M +   + D  T  A +S+ +T+ +++ G ++H   ++   
Sbjct: 370 ISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              V V N+LI+MY +C+ ++ A  IF ++  K V+SW+S+I G   +++  EAL  F +
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQ 489

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           MK+  ++ + +T+   L AC  IGAL   K +H + ++ G+     +  A+   Y +CG 
Sbjct: 490 MKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           + +A   F+ +K   KD+ +WN +++ Y++ G  S   +L+ +M ++ VRPD ITF+ LL
Sbjct: 549 MNIAWNQFNSQK---KDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLL 605

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
             C  + +V +G + F +M+E YG  P+ +HYA +V+LLGRAG + EA + ++ MP  PD
Sbjct: 606 CGCGKSQMVRQGLMYFSKMEE-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
             VWG LL+AC++H   +L EL+A+++  ++  + G Y+LL N+YA  GKW  VAK+R  
Sbjct: 665 PAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRM 724

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILELEIMEGRRESSE 722
           +++ GL    GCSW+E+   VH F + D+ HPQ   I T+L G  E     G   SSE
Sbjct: 725 MKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMSEVGLTTSSE 782



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 213/416 (51%), Gaps = 13/416 (3%)

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           NGK E++ +L   M+      D    + L+R     ++ E G  V+ VA+ S     + +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVEL 131

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSG 329
             A L+M+ +  +L DA  +F KMS+++   WN+++  Y + G+  E++ L   M+   G
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGG 191

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            + D++T    + +   + ++  G+++H +V+R G +  + V N+LI MY +C D+  AR
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +FD +  + ++SW++MI GY  +    E L+LF  M+   V+ D +T+ +++ AC  +G
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLG 311

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
                + +H Y +  G     SV  ++   Y   G    A +LF   ++D KDI++W +M
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLF--SRMDCKDIVSWTTM 369

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG----RIIFKEMK 565
           IS Y  +    +    Y  M Q  V+PD IT   +L+AC   G ++ G    ++  K   
Sbjct: 370 ISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            SY    +     +++N+  +   +D+A ++  ++P K +   W  +++  ++++ 
Sbjct: 430 ISYVIVAN-----NLINMYSKCKCIDKALDIFHNIPRK-NVISWTSIIAGLRLNNR 479


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/679 (31%), Positives = 369/679 (54%), Gaps = 8/679 (1%)

Query: 28  PHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           PH  AT +  +L  C   +      Q+H   I + G   +++  S L+D Y+    L  +
Sbjct: 135 PHDYATFAV-ILKACSGIEDYGLGLQVHCLAIQM-GFENDVVTGSALVDMYSKCKKLDDA 192

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
            +VF  +   N + +  ++    +   + + L ++K M    M  ++ TY  V RSC+ L
Sbjct: 193 FRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGL 252

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
             F  G ++H   +K  F     +G A ++ Y KC+  F+  K +        +  +N++
Sbjct: 253 SAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWK-VFNTLPNPPRQSYNAI 311

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I    +  +  K+ ++F+ ++     FD  +L   L +   +K    G  +H +AV    
Sbjct: 312 IVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGL 371

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             ++ V   +L MY K  +L +A ++F++M  +D V WN +I+A+ Q+    ++L L + 
Sbjct: 372 GFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+RS    D FT  + V + +  + + +G ++H  ++++G      V ++L+DMY +C  
Sbjct: 432 MLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGM 491

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           L  A KI   ++ KT VSW+S+I G+ +  QS  A R FS+M   G+  D  T   +L  
Sbjct: 492 LMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDV 551

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N+  +E  K +H   +KL L+S   + + +   Y+KCG ++ +  +F  EK   +D +
Sbjct: 552 CANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMF--EKAPKRDYV 609

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           TW++MI AYA HG   +   L+ +M+  +V+P+   F+ +L AC + G V++G   F++M
Sbjct: 610 TWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKM 669

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
              YG +P  EHY+ MV+LLGR+G ++EA +L++ MPF+ D  +W  LLS CKM    E+
Sbjct: 670 LSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEV 729

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           AE     L+ ++P+++  YVLL+N+YA  G W  VAKMR+ +++  LKK PGCSWIE+  
Sbjct: 730 AEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRD 789

Query: 685 LVHEFWAADQSHPQADAIY 703
            VH F   D++HP+++ IY
Sbjct: 790 EVHTFLVGDKAHPRSEEIY 808



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 287/572 (50%), Gaps = 21/572 (3%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
            +++I  + LI  YA +G +  +Q +F+S+   + + + ++L      G   K++ ++ +
Sbjct: 69  QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC-- 179
           M    +     T+  ++++CS + D+  G ++H   +++GF++    G ALV+ Y KC  
Sbjct: 129 MRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK 188

Query: 180 -DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            D  F        R F+++  R    W+++I+  VQN +  +  +LFK M   G      
Sbjct: 189 LDDAF--------RVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T  ++ RS   L + +LG  +H  A+ SDF  D  + TA L MY+K   + DA  +F+ +
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTL 300

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            +  R  +N +I  Y +     ++L++   + R+    D  +   A+++ S +K    G 
Sbjct: 301 PNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGI 360

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H   ++ G  + + V N+++DMY +C  L  A  IF+ ++ +  VSW+++I  +  ++
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNE 420

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           + ++ L LF  M    +E D  T  +++ AC    AL +   +HG  +K G+     V +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGS 480

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y KCG +  A ++    +++ K  ++WNS+IS ++         + ++QM +  +
Sbjct: 481 ALVDMYGKCGMLMEAEKI--HARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGI 538

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVNLLGRAGHMDEA 593
            PD  T+  +L  C N   +E G+ I  ++ +   +  S  + AS +V++  + G+M ++
Sbjct: 539 IPDNYTYATVLDVCANMATIELGKQIHAQILKLQLH--SDVYIASTLVDMYSKCGNMQDS 596

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           R + +  P K D   W  ++ A   H   E A
Sbjct: 597 RLMFEKAP-KRDYVTWSAMICAYAYHGLGEKA 627



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/546 (26%), Positives = 261/546 (47%), Gaps = 50/546 (9%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD------------ 180
           T+  +++ CS L     G+++H Q++  GF     V + L++FY K              
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 181 ---------------GGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
                           G  N  G  Q  F  +  R    WNSL+S  + NG + KS E+F
Sbjct: 68  PQRDVISWNTLIFGYAGIGN-MGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             MR      D  T   +L++   ++   LG  VHC+A+   F  D+   +AL+ MYSK 
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             L+DA  +F +M +++ V W+ +I+ Y Q+    E L+L   M++ G      T  +  
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            S + +   + G Q+H + L++   Y   +  + +DMY +CE +  A K+F+++      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-LEHVKYLHGY 460
           S++++I GY   DQ L+AL +F  ++   +  D +++   L AC  I   LE ++ LHG 
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ-LHGL 365

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           ++K GL     V   I   Y KCG +  A  +F+E  ++ +D ++WN++I+A+ ++ +  
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALMEACLIFEE--MERRDAVSWNAIIAAHEQNEEIV 423

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTAC-----VNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +   L+  M +S + PD  T+  ++ AC     +N G    GRII   M   +       
Sbjct: 424 KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG---- 479

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
             +++V++ G+ G + EA ++   +  K     W  ++S      ++E A+    +++ M
Sbjct: 480 --SALVDMYGKCGMLMEAEKIHARLEEKTTVS-WNSIISGFSSQKQSENAQRYFSQMLEM 536

Query: 636 E--PEN 639
              P+N
Sbjct: 537 GIIPDN 542


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/656 (33%), Positives = 359/656 (54%), Gaps = 24/656 (3%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQVF------NSITSPNSLLYGTILKNLSKFG 110
           + HGL ++  +++ LI  YA  G+L  + +VF        + S NS++ G  L+N    G
Sbjct: 191 VKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC-LQN----G 245

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
            + + L +++ M    +     T   V++ C+ L     G ++HA ++K G +  +   +
Sbjct: 246 MFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSE-VNIQCN 304

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
           AL+  Y KC G  ++      R F+++  +    WNS++S  VQNG   ++ E    M  
Sbjct: 305 ALLVMYTKC-GRVDSA----LRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLR 359

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G + D   +++L  +   L  L  G+ VH  A+      D  V   L+ MY K   +E 
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           +  +FD+M  KD + W  +I+ Y QS    E+LE+     + G + D     + + + S 
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSG 479

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           ++ I   KQ+H   +RNG    + V N +ID+Y EC ++  + K+F++V+ K +V+W+SM
Sbjct: 480 LETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSM 538

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  Y       EAL LF+EM+   V+ D V +++IL A   + +L   K +HG+ ++   
Sbjct: 539 INCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNF 598

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +   ++ +++   Y+ CG +  A ++F+   +  KD++ W +MI+A   HG   Q   L+
Sbjct: 599 HMEEAIVSSLVDMYSGCGSLSGALKVFN--AVKCKDMVLWTAMINATGMHGHGKQAIDLF 656

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M Q+ V PD ++FL LL AC ++ LV EG+     M  +Y  EP QEHYA +V+LLGR
Sbjct: 657 KRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGR 716

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           +G  +EA E +K MP KP + VW  LL AC++H   ELA + A +L+ +EP+N GNYVL+
Sbjct: 717 SGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLV 776

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           SN++A  GKWN   ++R  + +RGL+K P CSWIEIG  VH F   D SH  A+ I
Sbjct: 777 SNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERI 832



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 165/588 (28%), Positives = 302/588 (51%), Gaps = 26/588 (4%)

Query: 50  QIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q+HA  +    L   +  L++ L+  Y   G ++ ++ +F+ ++S     +  ++     
Sbjct: 79  QVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLS 138

Query: 109 FGEYEKTLLVYKQMALQS---MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            G   + L VY+ M L +   + P   T   V+++     D   G ++H   VK G D  
Sbjct: 139 SGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRS 198

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
             V +AL+  Y KC G  ++   + +     +D+ S WNS+IS  +QNG   ++ +LF+ 
Sbjct: 199 TFVANALIAMYAKC-GILDSAMRVFELMHDGRDVAS-WNSMISGCLQNGMFLQALDLFRG 256

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M+      +S T + +L+   EL  L LGR +H   + S    ++  N ALL MY+K   
Sbjct: 257 MQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCN-ALLVMYTKCGR 315

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           ++ A  +F ++ +KD + WN M+S Y Q+G   E++E +  M+R GF+ D    ++  S+
Sbjct: 316 VDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
           +  +  +  GK++HA  ++   D    V N+L+DMY +C  +  +  +FD ++ K  +SW
Sbjct: 376 VGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISW 435

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I  Y    + +EAL +F E + EG++VD + I +IL AC  +  +   K LH Y+++
Sbjct: 436 TTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIR 495

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL  L   N  I I Y +CG +  + ++F  E ++ KDI+TW SMI+ YA  G  ++  
Sbjct: 496 NGLLDLVVKNRIIDI-YGECGEVYHSLKMF--ETVEQKDIVTWTSMINCYANSGLLNEAL 552

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY------ 577
            L+ +M+ +DV+PD +  + +L A      + +G       KE +G+   +  +      
Sbjct: 553 VLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKG-------KEVHGFLIRRNFHMEEAIV 605

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +S+V++    G +  A ++   +  K D  +W  +++A  MH   + A
Sbjct: 606 SSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHGKQA 652



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  ++I    H    + S+L+D Y+  G LS + +VFN++   + +L+  ++     
Sbjct: 587 KEVHG-FLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGM 645

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            G  ++ + ++K+M    + P   ++  ++ +CS
Sbjct: 646 HGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACS 679


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/697 (30%), Positives = 380/697 (54%), Gaps = 15/697 (2%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLI 72
           +K   F   +T   +T +    L++ C    + +H ++IH  +++    H +L L ++++
Sbjct: 47  IKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIH-DHMLKSKSHPDLTLQNHIL 105

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           + Y     L  +Q+VF+++   N + + +++   S+ G+    L  Y QM    + P + 
Sbjct: 106 NMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQF 165

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T+  +I++CS L D   G ++HA V+K  F +     +AL+  Y K +   +      + 
Sbjct: 166 TFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRM 225

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFDSGTLINLLRSTVELKS 248
             +DL S W S+I+   Q G   ++   FK M  +G     EF  G++ +   S ++   
Sbjct: 226 ATRDLIS-WGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQP-- 282

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
            E GR +H +++     +D+    +L  MY+K   L  A+++F ++   D V WN +I+ 
Sbjct: 283 -EYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAG 341

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           +   G  KE++     M   G   D  T  + + + ++   +  G Q+H  + + G D  
Sbjct: 342 FAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLD 401

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           V V N+L+ MY +C +L  A   F+ ++    +VSW++++   + HDQ+ E  RL   M 
Sbjct: 402 VPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMC 461

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
           +     D++T+ N+L A     ++E    +H Y++K GLN  +SV   +   YAKCG ++
Sbjct: 462 ISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLK 521

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A ++FD   + + D+++W+S+I  YA+ G   +  KL+  M++ DV+P+ +TF+G+LTA
Sbjct: 522 TAHKIFDS--MINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTA 579

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C + GLVEEG  ++  M++ +G  P++EH + MV+LL RAG ++EA   +  M F PD  
Sbjct: 580 CSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIV 639

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VW  LL+ACK H   ++ +  AE ++ ++P N+  +VLL NIYA+ G W  VA++R+ ++
Sbjct: 640 VWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMK 699

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
            RG++K PG SWIE+   +H F+  D  HP+ + IYT
Sbjct: 700 QRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIYT 736



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 237/474 (50%), Gaps = 10/474 (2%)

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSE--KSFELFKLMRMEGAEFDSGTLINLLRS 242
           N K  +  K +  +S    + SL  Q   +E  K+FE   L +  G      T   L+ +
Sbjct: 15  NVKETVLSKLRAEQSSNEYITSLCKQKLFNEAIKAFEF--LQKKTGFCLTLSTYAYLISA 72

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
              L+SLE G+ +H   + S    DL++   +L+MY K  SL+DA+ +FD M +++ V W
Sbjct: 73  CSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSW 132

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
             +I+ Y Q+G    +LE    M++SG   D FT  + + + S++ +I  G+Q+HA+VL+
Sbjct: 133 TSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLK 192

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           +     +   N+LI MY +   +  A  +F  + T+ ++SW SMI G+      LEAL  
Sbjct: 193 SEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCY 252

Query: 423 FSEMKLEGVEVDFVTII-NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           F EM  +GV +    I  ++  AC ++   E+ + LHG S+K GL        ++   YA
Sbjct: 253 FKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYA 312

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  A  +F   +I   D++ WN++I+ +A  GD  +    ++QM+   + PD IT 
Sbjct: 313 KCGLLSCARVVF--YQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITV 370

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             LL AC +   + +G  +   + +  G +       +++ +  +   + +A    ++M 
Sbjct: 371 RSLLCACTSPSELYQGMQVHGYINK-MGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMR 429

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
              D   W  +L+AC  H + E       KL+ +  ++  +Y+ L+N+  A+ +
Sbjct: 430 CNADLVSWNAILTACMRHDQAEEV-FRLLKLMCIS-QHRPDYITLTNVLGASAE 481


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 312/539 (57%), Gaps = 35/539 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I     +     +  L+  M   G   +S T   L +S  + K+ + G+ +H   +
Sbjct: 46  WNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQIL 105

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFD---------------------------K 293
                 DL V+T+L+SMY++   +EDA  +FD                           K
Sbjct: 106 KYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQK 165

Query: 294 MSD----KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           M D    KD V WN MIS Y + G  KE+LEL   M++   + D  T    +S+ +   N
Sbjct: 166 MFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGN 225

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E G+Q+H+ +  +G    + + N+LID+Y +C ++  A  +F+ ++ K V+SW+++I G
Sbjct: 226 VELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGG 285

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLN 467
           Y   +   EAL +F EM   G   + VT+++ILPAC ++GA++  +++H Y  K   G+ 
Sbjct: 286 YAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGII 345

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           + +S+ T++   YAKCG IE A ++FD   I +K + + N+MI  +A HG     F L +
Sbjct: 346 TNTSLQTSLIDMYAKCGNIEAANQVFD--TILNKSLSSCNAMIFGFAMHGRADAAFDLLS 403

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +MK+  + PD ITF+GLL+AC +AGL + GR IFK M   Y  EP  EHY  M++LLGR+
Sbjct: 404 RMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRS 463

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G   EA EL+  M  +PD  +WG LL ACK+H   EL EL A+KL+ +EP+N G+YVLLS
Sbjct: 464 GLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLS 523

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           NIYA + +W+ VA++RT L D+GLKK PGCS IEI  +VHEF   D+ HPQ   IY +L
Sbjct: 524 NIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKML 582



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 148/606 (24%), Positives = 259/606 (42%), Gaps = 85/606 (14%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  VF SI  PN L + T+++  +   +    L +Y  M    + P   T+PF+ +S
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 141 CSCLLDFISGEKIHAQVVKLGF------------------------DSFDDVGDALVEFY 176
           C+       G++IHAQ++K G                           FD      V  Y
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 177 IKCDGGFENEKGM--IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
                G+ +   M   Q+ F ++  +    WN++IS   + G+ +++ ELF  M     +
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            D  T+  +L +     ++ELGR +H       F  +L +  AL+ +YSK   +E A  L
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGL 267

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F+ +  KD + WN +I  Y      KE+L +   M++ G   +  T ++ + + + +  I
Sbjct: 268 FEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAI 327

Query: 351 EWGKQMHANVLR--NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           + G+ +H  + +   G     S+  SLIDMY +C ++  A ++FD++  K++ S ++MI 
Sbjct: 328 DIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIF 387

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G+  H ++  A  L S MK +G+E D +T + +L AC + G                   
Sbjct: 388 GFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAG------------------- 428

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
           LS +   IF S        M  +   E K++      +  MI    + G + +  +L   
Sbjct: 429 LSDLGRKIFKS--------MTLDYRIEPKLEH-----YGCMIDLLGRSGLFKEAEELINS 475

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    + PD + +  LL AC     +E G +I +++ +     P    Y  + N+   + 
Sbjct: 476 MT---MEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGS--YVLLSNIYATSA 530

Query: 589 HMDE---ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS--MEPENAGNY 643
             D+    R L+ D   K         +  C   S  E+  +  E LI     P+N   Y
Sbjct: 531 RWDDVARVRTLLNDKGLKK--------VPGC---SSIEIDSMVHEFLIGDKFHPQNKEIY 579

Query: 644 VLLSNI 649
            +L  I
Sbjct: 580 KMLEEI 585



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           ++L+ C +  +++   QIH+ +I  HG   NL L + LID Y+  G +  +  +F  +  
Sbjct: 215 TVLSTCTHSGNVELGRQIHS-WIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++   +    +++ LLV+++M      P + T   ++ +C+ L     G  I
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333

Query: 154 HAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           H  + K   G  +   +  +L++ Y KC G  E    +         S  N++I     +
Sbjct: 334 HVYIDKKLKGIITNTSLQTSLIDMYAKC-GNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSV 270
           G+++ +F+L   M+ +G E D  T + LL +       +LGR I   + +       L  
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452

Query: 271 NTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
              ++ +  +    ++A+ L + M+ + D V+W  ++ A
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKA 491


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 241/764 (31%), Positives = 392/764 (51%), Gaps = 75/764 (9%)

Query: 21  FPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYAN 77
           F + Q  P    T S  +   C + + L   +Q HAR +IL      + +++ LI  Y  
Sbjct: 32  FSSYQATPTKKKTFS-HIFQECSDRKALCPGKQAHAR-MILTEFKPTVFVTNCLIQMYIK 89

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE------ 131
              L  + +VF+ +   +++ +  +L   +  G+      ++  M        E      
Sbjct: 90  CSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRM 149

Query: 132 ---------DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC--- 179
                     T+  V++SCS L D   G +IH   VK+GFD     G AL++ Y KC   
Sbjct: 150 GRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQ 209

Query: 180 ----DGGFENEK-------GMIQRKFKDLKSR---------------------------- 200
                GG E  K       G +Q     LK+                             
Sbjct: 210 NDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQL 269

Query: 201 WNSLISLAVQN--------GKSEKSFE---LFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           +NSL +  +Q+         +S+K  E   +F+L++  G   D  +L    R+   +K  
Sbjct: 270 FNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGD 329

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             G  VH +++ S    ++ V  A+L MY K  +L +A ++F++M  +D V WN +I+A+
Sbjct: 330 LEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAH 389

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            Q+G  +++L L + M++SG   D FT  + + + +  + +  G ++H  ++++      
Sbjct: 390 EQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDS 449

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V  +LIDMY +C  +  A K+ D +  +TVVSW+++I G+    QS EA + FS+M   
Sbjct: 450 FVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 509

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           GV+ D  T   IL  C N+  +E  K +H   +K  L S + +++ +   Y+KCG ++  
Sbjct: 510 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDF 569

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             +F  EK  ++D +TWN+M+  YA+HG   +  K++  M+  +V+P+  TFL +L AC 
Sbjct: 570 QLIF--EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 627

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           + GLVE+G   F  M  +YG +P  EHY+ +V+++GR+G + +A EL++ MPF+ DA +W
Sbjct: 628 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 687

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
             LLS CK+H   E+AE  A  ++ +EPE++  YVLLSNIYA AG WN V K+R  +R  
Sbjct: 688 RTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFN 747

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           GLKK PGCSWIEI   VH F   D++HP++  IY  L +L  E+
Sbjct: 748 GLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEM 791



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 142/554 (25%), Positives = 250/554 (45%), Gaps = 91/554 (16%)

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           KTL +    + Q+    + T+  + + CS       G++ HA+++   F     V + L+
Sbjct: 25  KTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLI 84

Query: 174 EFYIKC-DGGFENE--KGMIQRKFKDLKSRWNSLISLAVQNGK---SEKSFEL------- 220
           + YIKC D GF  +   GM QR        WN+++      G    ++K F+        
Sbjct: 85  QMYIKCSDLGFAFKVFDGMPQRD----TVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCG 140

Query: 221 ------FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
                 F++ RM G  FD  T   +L+S   L+    G  +H +AV   F  D+   +AL
Sbjct: 141 VVELFDFRMGRM-GTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSAL 199

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L MY+K     D                             +  LEL   M ++G  A  
Sbjct: 200 LDMYAKCCVQNDDL---------------------------RGGLELFKEMQKAGVGA-- 230

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL-NCARKIFD 393
                               Q+H + L+      V +  + +DMY +C +L +C+ ++F+
Sbjct: 231 -------------------LQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFN 271

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI-GALE 452
           S+    + S++++I GY   D+ +EAL +F  ++  G+ +D V++     AC  I G LE
Sbjct: 272 SLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE 331

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            ++ +HG SMK    S   V  AI   Y KCG +  A  +F+E  + S+D ++WN++I+A
Sbjct: 332 GLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE--MVSRDAVSWNAIIAA 388

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-----VNAGLVEEGRIIFKEMKES 567
           + ++G+  +   L+  M QS + PD  T+  +L AC     +N G+    RII    K  
Sbjct: 389 HEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRII----KSR 444

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
            G +       +++++  + G M++A +L  D   +     W  ++S   +  ++E A+ 
Sbjct: 445 MGLDSFVG--IALIDMYSKCGMMEKAEKL-HDRLAEQTVVSWNAIISGFSLQKQSEEAQK 501

Query: 628 TAEKLISM--EPEN 639
           T  K++ M  +P+N
Sbjct: 502 TFSKMLEMGVDPDN 515


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/674 (33%), Positives = 363/674 (53%), Gaps = 36/674 (5%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C   + L   +Q+H   +++ G   ++ +++ L+  YA       S+++F+ I  
Sbjct: 162 SVLKACSIVKDLRIGKQVHG-VVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +     +     + + ++ +M L  + P E +   ++ +C+ L D   G+ I
Sbjct: 221 RNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNG 212
           H  ++KLG+D      +ALV+ Y K  G   +   + ++ K  D+ S WN++I+  V + 
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKV-GDLADAISVFEKIKQPDIVS-WNAVIAGCVLHE 338

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             E++ EL   M+                           R +H   +  D   DL V+ 
Sbjct: 339 HHEQALELLGQMK---------------------------RQLHSSLMKMDMESDLFVSV 371

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MYSK   LEDA+M F+ + +KD + WN +IS Y Q     E+L L + M + G   
Sbjct: 372 GLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF 431

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           +  T    + S + ++ +   +Q+H   +++G    + V NSLID Y +C  +  A +IF
Sbjct: 432 NQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIF 491

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +      +VS++SMI  Y  + Q  EAL+LF EM+   ++ D     ++L AC N+ A E
Sbjct: 492 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFE 551

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K LH + +K G         ++   YAKCG I+ AG  F E  +  + I++W++MI  
Sbjct: 552 QGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE--LTERGIVSWSAMIGG 609

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            A+HG   Q  +L+ QM +  V P+ IT + +L AC +AGLV E ++ F+ M+E +G++P
Sbjct: 610 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 669

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
            QEHYA M++LLGRAG ++EA ELV  MPF+ +A VWG LL A ++H + EL    AE L
Sbjct: 670 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEML 729

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +EPE +G +VLL+NIYA+AGKW  VA++R  +RD  +KK PG SWIE+   V+ F   
Sbjct: 730 FILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVG 789

Query: 693 DQSHPQADAIYTIL 706
           D+SH ++  IY  L
Sbjct: 790 DRSHYRSQEIYAKL 803



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/563 (26%), Positives = 282/563 (50%), Gaps = 43/563 (7%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL+ C   + L+   QIHA +I   GL  +  + ++LI+ Y+       ++++ +  + P
Sbjct: 62  LLSQCCTTKSLRPGLQIHA-HITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEP 120

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   ++ G     L+ + +M L  +   E T+  V+++CS + D   G+++H
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
             VV  GF+    V + LV  Y KCD   ++     +R F ++  R    WN+L S  VQ
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDS-----KRLFDEIPERNVVSWNALFSCYVQ 235

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
                ++  LF  M + G + +  +L +++ +   L+    G+I+H   +   +  D   
Sbjct: 236 XDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             AL+ MY+K+  L DA  +F+K+   D V WN +I+        +++LELL  M R   
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR--- 352

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
                                   Q+H+++++   +  + V   L+DMY +C+ L  AR 
Sbjct: 353 ------------------------QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 388

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
            F+ +  K +++W+++I GY  + + +EAL LF EM  EG+  +  T+  IL +   +  
Sbjct: 389 AFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV 448

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +   + +HG S+K G +S   V  ++  SY KC  +E A  +F+E  I   D++++ SMI
Sbjct: 449 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG--DLVSFTSMI 506

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +AYA++G   +  KL+ +M+  +++PD      LL AC N    E+G+ +   + + YG+
Sbjct: 507 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGF 565

Query: 571 EPSQEHYASMVNLLGRAGHMDEA 593
                   S+VN+  + G +D+A
Sbjct: 566 VLDIFAGNSLVNMYAKCGSIDDA 588



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 154/606 (25%), Positives = 272/606 (44%), Gaps = 68/606 (11%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +++ + +F E  +T  +   +   +  P   +Y  ++  C        G +IHA + K G
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
                 + + L+  Y KC       K + +    DL S W++LIS   QNG    +   F
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVS-WSALISGYAQNGLGGGALMAF 145

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M + G + +  T  ++L++   +K L +G+ VH V VVS F  D+ V   L+ MY+K 
Sbjct: 146 HEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKC 205

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
               D+K LFD++ +++ V WN + S Y Q  F  E++ L   MV SG + + F+  + V
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
           ++ + +++   GK +H  +++ G D+     N+L+DMY +  DL  A  +F+ +K   +V
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIV 325

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+++I G V H+   +AL L  +MK                           + LH   
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMK---------------------------RQLHSSL 358

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           MK+ + S   V+  +   Y+KC  +E A   F+   +  KD+I WN++IS Y+++ +  +
Sbjct: 359 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFN--LLPEKDLIAWNAIISGYSQYWEDME 416

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR---------------IIFKEMKE 566
              L+ +M +  +  +  T   +L +     +V   R                +   + +
Sbjct: 417 ALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLID 476

Query: 567 SYGYEPSQEH---------------YASMVNLLGRAGHMDEAREL---VKDMPFKPDARV 608
           SYG     E                + SM+    + G  +EA +L   ++DM  KPD  V
Sbjct: 477 SYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFV 536

Query: 609 WGPLLSACKMHSETELAELTAEKLIS---MEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
              LL+AC   S  E  +     ++    +    AGN   L N+YA  G  +   +  + 
Sbjct: 537 CSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS--LVNMYAKCGSIDDAGRAFSE 594

Query: 666 LRDRGL 671
           L +RG+
Sbjct: 595 LTERGI 600



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 111/217 (51%), Gaps = 20/217 (9%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           + +T    ++++C      +Q+H    +  G H ++ + ++LIDSY     +  ++++F 
Sbjct: 440 LKSTAGLQVVHVC------RQVHG-LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFE 492

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
             T  + + + +++   +++G+ E+ L ++ +M    + P       ++ +C+ L  F  
Sbjct: 493 ECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQ 552

Query: 150 GEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
           G+++H  ++K GF  D F   G++LV  Y KC  G  ++ G   R F +L  R    W++
Sbjct: 553 GKQLHVHILKYGFVLDIF--AGNSLVNMYAKC--GSIDDAG---RAFSELTERGIVSWSA 605

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           +I    Q+G   ++ +LF  M  EG   +  TL+++L
Sbjct: 606 MIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVL 642


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/679 (31%), Positives = 366/679 (53%), Gaps = 8/679 (1%)

Query: 28  PHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           PH  AT S  +L  C   +      Q+H   I + G   +++  S L+D Y+    L  +
Sbjct: 135 PHDYATFSV-VLKACSGIEDYGLGLQVHCLAIQM-GFENDVVTGSALVDMYSKCKKLDGA 192

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
            ++F  +   N + +  ++    +   + + L ++K M    M  ++ TY  V RSC+ L
Sbjct: 193 FRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGL 252

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
             F  G ++H   +K  F     +G A ++ Y KCD   +  K +        +  +N++
Sbjct: 253 SAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWK-VFNTLPNPPRQSYNAI 311

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I    +  +  K+ E+F+ ++     FD  +L   L +   +K    G  +H +AV    
Sbjct: 312 IVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGL 371

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             ++ V   +L MY K  +L +A  +FD M  +D V WN +I+A+ Q+    ++L L + 
Sbjct: 372 GFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+RS    D FT  + V + +  + + +G ++H  ++++G      V ++L+DMY +C  
Sbjct: 432 MLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGM 491

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           L  A KI D ++ KT VSW+S+I G+ +  QS  A R FS+M   GV  D  T   +L  
Sbjct: 492 LMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDV 551

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N+  +E  K +H   +KL L+S   + + +   Y+KCG ++ +  +F  EK   +D +
Sbjct: 552 CANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMF--EKTPKRDYV 609

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           TW++MI AYA HG   Q  KL+ +M+  +V+P+   F+ +L AC + G V++G   F+ M
Sbjct: 610 TWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIM 669

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           +  YG +P  EHY+ MV+LLGR+  ++EA +L++ M F+ D  +W  LLS CKM    E+
Sbjct: 670 QSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEV 729

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           AE     L+ ++P+++  YVLL+N+YA  G W  VAK+R+ +++  LKK PGCSWIE+  
Sbjct: 730 AEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRD 789

Query: 685 LVHEFWAADQSHPQADAIY 703
            VH F   D++HP+++ IY
Sbjct: 790 EVHTFLVGDKAHPRSEEIY 808



 Score =  225 bits (573), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 155/589 (26%), Positives = 301/589 (51%), Gaps = 23/589 (3%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           H+++I  + +I  YA +G +  +Q +F+++   + + + ++L      G   K++ ++ +
Sbjct: 69  HRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC-- 179
           M    +     T+  V+++CS + D+  G ++H   +++GF++    G ALV+ Y KC  
Sbjct: 129 MRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK 188

Query: 180 -DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            DG F        R F+++  R    W+++I+  VQN +  +  +LFK M   G      
Sbjct: 189 LDGAF--------RIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T  ++ RS   L + +LG  +H  A+ SDF  D  + TA L MY+K   + DA  +F+ +
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTL 300

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            +  R  +N +I  Y +     ++LE+   + R+    D  +   A+++ S +K    G 
Sbjct: 301 PNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGI 360

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H   ++ G  + + V N+++DMY +C  L  A  IFD ++ +  VSW+++I  +  ++
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNE 420

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           + ++ L LF  M    +E D  T  +++ AC    AL +   +HG  +K G+     V +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGS 480

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y KCG +  A ++ D  +++ K  ++WNS+IS ++         + ++QM +  V
Sbjct: 481 ALVDMYGKCGMLMEAEKIHD--RLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGV 538

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVNLLGRAGHMDEA 593
            PD  T+  +L  C N   +E G+ I  ++ +   +  S  + AS +V++  + G+M ++
Sbjct: 539 IPDNFTYATVLDVCANMATIELGKQIHAQILKLNLH--SDVYIASTLVDMYSKCGNMQDS 596

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELA-ELTAE-KLISMEPENA 640
           R + +  P K D   W  ++ A   H   E A +L  E +L++++P + 
Sbjct: 597 RLMFEKTP-KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHT 644



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 223/458 (48%), Gaps = 48/458 (10%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDF--------------CKDLSVNTA------- 273
           T  ++L+    LK+L  G+  H   +V+ F              CK  ++N A       
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 274 ----------LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
                     ++  Y+++ ++  A+ LFD M ++D V WN ++S Y  +G  ++S+E+ +
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M       D  T    + + S +++   G Q+H   ++ G +  V   ++L+DMY +C+
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L+ A +IF  +  + +V WS++I GYV +D+ +E L+LF +M   G+ V   T  ++  
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C  + A +    LHG+++K      S + TA    YAKC  +  A ++F+   + +   
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFN--TLPNPPR 305

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEGRIIFK 562
            ++N++I  YA+     +  +++  ++++ +  D I+  G LTAC V  G +E  ++   
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGL 365

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            +K   G+     +  +++++ G+ G + EA  +  DM  + DA  W  +++A   H + 
Sbjct: 366 AVKCGLGFNICVAN--TILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAA---HEQN 419

Query: 623 ELAELTAEKLIS-----MEPENAGNYVLLSNIYAAAGK 655
           E    T    +S     MEP+   ++   S + A AG+
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPD---DFTYGSVVKACAGQ 454



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 131/302 (43%), Gaps = 36/302 (11%)

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT    +   S +K +  GKQ HA ++       + V N L+  YC+  ++N A K+FD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 395 VKTKTVVSWSSMIKGY-----VTHDQSL--------------------------EALRLF 423
           +  + V+SW++MI GY     +   QSL                          +++ +F
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M+   +  D+ T   +L AC  I        +H  ++++G  +     +A+   Y+KC
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
             ++ A  +F E  +  ++++ W+++I+ Y ++  + +  KL+  M +  +     T+  
Sbjct: 187 KKLDGAFRIFRE--MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 544 LLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
           +  +C      + G  +    +K  + Y+       + +++  +   M +A ++   +P 
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG--TATLDMYAKCDRMSDAWKVFNTLPN 302

Query: 603 KP 604
            P
Sbjct: 303 PP 304


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 328/600 (54%), Gaps = 42/600 (7%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLA 208
           G+++H  ++ LGF+    +   LV FY   D     +   I      L    WN LIS  
Sbjct: 112 GKQLHTLIISLGFEQHPIIVPKLVTFYTNFD--LLADAHTITENSNILHPLPWNLLISSY 169

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           V+NG   ++   +K M  +G   D  T  ++L++  E   +  G+ +H     S    +L
Sbjct: 170 VRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNL 229

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY------------------- 309
            V+ +L+SMY+K   L  A+ LF+ M ++D V WN MIS Y                   
Sbjct: 230 FVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVE 289

Query: 310 ----------------YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
                            QSG  +E+LELL  M   G   D    I  + + S +  I+ G
Sbjct: 290 GIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLG 349

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           +++H + +R+  D   +V N+LI MY  C+ L  A  +F S +TK +++W+SM+ GY   
Sbjct: 350 REIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHM 409

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM-KLGLNSLSSV 472
           D+S EA  LF EM L G+E ++VTI +ILP C  +  L+H K  H Y + + G      +
Sbjct: 410 DRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLL 469

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             ++   YA+ G +  A  LFD   I  +D +T+ S+I+ Y   G+  +  KL+ +MK+ 
Sbjct: 470 WNSLVDMYARSGKVLEAKRLFDS--ISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKR 527

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            ++PD +T + +L+AC ++GLV EG  +F+ M  +YG  P  EH+A MV+L GRAG + +
Sbjct: 528 HIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHK 587

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A+E++  MP++P + +W  LL AC++H   E+ E  AEKL+ M PEN+G YVL++N+YAA
Sbjct: 588 AKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAA 647

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILEL 711
           AG W+ +AK+RT++RD G++K PGC+W+++G     F   D S P  + +Y +L G+ EL
Sbjct: 648 AGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTEL 707



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 215/439 (48%), Gaps = 42/439 (9%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   I L G  Q+ I+   L+  Y N  LL+ +  +  +    + L +  ++ +  +
Sbjct: 113 KQLHTLIISL-GFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVR 171

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFD 166
            G + + L  YKQM  + + P + TYP V+++C   LD   G+K+HA +    LG++ F 
Sbjct: 172 NGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLF- 230

Query: 167 DVGDALVEFYIKCDG------GFEN-----------------EKGMIQRKFKDL-KSR-- 200
            V ++LV  Y K          FEN                  KGM +  F+   K R  
Sbjct: 231 -VHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVE 289

Query: 201 --------WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
                   WN++    VQ+G  E++ EL   MR  G + DS   I  L +   + +++LG
Sbjct: 290 GIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLG 349

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R +H  A+ S +    +V  AL++MYS+   L  A  LF     K+ + WN M+S Y   
Sbjct: 350 REIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHM 409

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS--DYQVS 370
              +E+  L   M+ SG   +  T  + +   + + N++ GK+ H  +LR     DY + 
Sbjct: 410 DRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLL- 468

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           + NSL+DMY     +  A+++FDS+  +  V+++S+I GY    +  EAL+LF EMK   
Sbjct: 469 LWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRH 528

Query: 431 VEVDFVTIINILPACVNIG 449
           ++ D VT++ +L AC + G
Sbjct: 529 IKPDHVTMVAVLSACSHSG 547



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 212/435 (48%), Gaps = 43/435 (9%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGA-----EFDSGTLINLLRSTVELKSLELGRIVH 256
           NSL   A Q G   K+F+ F L++   +     +    ++ +LL S V LKSL  G+ +H
Sbjct: 58  NSLKGFASQ-GNLLKAFKTFSLIQRHASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLH 116

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + +   F +   +   L++ Y+    L DA  + +  +    + WN++IS+Y ++G   
Sbjct: 117 TLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHG 176

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+L     M   G R D FT  + + +     +I +GK++HA++  +   + + VHNSL+
Sbjct: 177 EALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLV 236

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY +  +L+ AR +F+++  +  VSW++MI GY +     EA  LF +M++EG+E++ +
Sbjct: 237 SMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNII 296

Query: 437 TIINI-----------------------------------LPACVNIGALEHVKYLHGYS 461
           T   I                                   L AC +IGA++  + +HG +
Sbjct: 297 TWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSA 356

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           ++   + + +V  A+   Y++C  +  A  LF   +  +K+IITWNSM+S Y       +
Sbjct: 357 IRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTR--TKNIITWNSMLSGYTHMDRSEE 414

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ +M  S + P+ +T   +L  C     ++ G+     +    G++     + S+V
Sbjct: 415 ASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLV 474

Query: 582 NLLGRAGHMDEAREL 596
           ++  R+G + EA+ L
Sbjct: 475 DMYARSGKVLEAKRL 489



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 26/194 (13%)

Query: 37  SLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L LC    N QH ++ H   +   G    L+L ++L+D YA  G +  ++++F+SI+ 
Sbjct: 436 SILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISR 495

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + Y +++      GE  + L ++ +M  + + P   T   V+ +CS           
Sbjct: 496 RDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACS----------- 544

Query: 154 HAQVVKLGFDSFDDVGDA------LVEFYIKCD-----GGFENEKGMIQR-KFKDLKSRW 201
           H+ +V  G   F+ +  A      L  F    D     G     K MI R  ++   + W
Sbjct: 545 HSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMW 604

Query: 202 NSLISLAVQNGKSE 215
            +L+     +G +E
Sbjct: 605 ATLLGACRIHGNAE 618


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/589 (36%), Positives = 324/589 (55%), Gaps = 36/589 (6%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEF-YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           ++IHA ++K G  +       L+EF  +   G       +     +     WNS+I    
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            +     +   F  M   G E +S T   LL+S  +L S   G+ +H   +   F  D+ 
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165

Query: 270 VNTALLSMYSKLASLEDAKM-------------------------------LFDKMSDKD 298
           ++T+L++MY++   + +A++                               LFD+M  KD
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN MI+ Y Q G  KE+L L   M ++    +  T ++ +S+ +    ++ G  M +
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRS 285

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            +   G    + + N+LIDMY +C DL  AR++FD +  + V+SW+ MI GY       E
Sbjct: 286 WIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKE 345

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF EM   GVE   +T ++ILP+C ++GA++  K++H Y  K   NS+S+  +   I
Sbjct: 346 ALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK-NFNSVSTSLSTSLI 404

Query: 479 S-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAKCG I  A ++FD  KI  K + +WN+MI   A HG   + F+L+++M    + P+
Sbjct: 405 DLYAKCGNIVAARQVFDGMKI--KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITF+G+L+AC +AGLV+ G+  F  M + Y   P  +HY  M++LLGRAG  +EA  L+
Sbjct: 463 EITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLL 522

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++M  KPD  +WG LL AC+ H   EL EL AE+L  +EP+N G YVLLSNIYA AGKW+
Sbjct: 523 QNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWD 582

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            VA++RT L DRG+KK PGC+ IE+  +VHEF   D+ HPQ++ IY +L
Sbjct: 583 DVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRML 631



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 167/595 (28%), Positives = 284/595 (47%), Gaps = 72/595 (12%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSIT 92
           S  LL+ C++ +  +QIHA +II  GLH  L   S LI+  + +  G +S +  +FNSI 
Sbjct: 32  SLKLLSKCQSIRTFKQIHA-HIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIE 90

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            PN  ++ ++++ LS        L+ + +M    + P   T+PF+++SC+ L     G++
Sbjct: 91  EPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ 150

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKS------------ 199
           IHA V+KLGF S   +  +L+  Y +  G   N + +  Q  F+D  S            
Sbjct: 151 IHAHVLKLGFVSDVFIHTSLINMYAQ-SGEMNNAQLVFDQSNFRDAISFTALIAGYALWG 209

Query: 200 ------------------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
                              WN++I+   Q G+S+++  LF+ MR      +  T++++L 
Sbjct: 210 YMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLS 269

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +  +  +L+LG  +         C +L +  AL+ MYSK   L+ A+ LFD M ++D + 
Sbjct: 270 ACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVIS 329

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN+MI  Y      KE+L L   M+ SG      T ++ + S + +  I+ GK +HA + 
Sbjct: 330 WNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYIN 389

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           +N +    S+  SLID+Y +C ++  AR++FD +K K++ SW++MI G   H Q+ +A  
Sbjct: 390 KNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFE 449

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LFS+M  +G+E + +T + IL AC + G ++           LG    SS          
Sbjct: 450 LFSKMSSDGIEPNEITFVGILSACKHAGLVD-----------LGQQFFSS---------- 488

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
                     +  + KI  K    +  MI    + G + +   L   M   +V+PD   +
Sbjct: 489 ----------MVQDYKISPKS-QHYGCMIDLLGRAGLFEEAESLLQNM---EVKPDGAIW 534

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
             LL AC + G VE G ++ + + E     P    Y  + N+   AG  D+   +
Sbjct: 535 GSLLGACRDHGRVELGELVAERLFELEPDNPGA--YVLLSNIYAGAGKWDDVARI 587



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 41/267 (15%)

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGL-NSLSSVNTAI-FISYAKCGCIEMAGELFDEE 496
           + +L  C +I      K +H + +K GL N+L +++  I F + ++ G I  A  LF+  
Sbjct: 33  LKLLSKCQSIRTF---KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFN-- 87

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            I+  ++  WNSMI   +     +     + +M  S V P+  TF  LL +C       E
Sbjct: 88  SIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHE 147

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRA----------------------------- 587
           G+ I   + +  G+      + S++N+  ++                             
Sbjct: 148 GKQIHAHVLK-LGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206

Query: 588 --GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME-PENAGNYV 644
             G+MD AR+L  +MP K D   W  +++       ++ A L  E +     P N    V
Sbjct: 207 LWGYMDRARQLFDEMPVK-DVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIV 265

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGL 671
            + +  A +   +    MR+++ DRGL
Sbjct: 266 SVLSACAQSNALDLGNSMRSWIEDRGL 292


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/679 (31%), Positives = 377/679 (55%), Gaps = 17/679 (2%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L   C N Q  + +HAR ++ + + QN+ +S+ L++ Y  LG ++L++  F+ I + + 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAI-QNVCISAKLVNLYCYLGNVALARYTFDHIHNRDV 117

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             +  ++    + G   + +  +    L S + P   T+P V+++C  + D   G KIH 
Sbjct: 118 YAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHC 174

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKS 214
             +K GF     V  +L+  Y +  G   N + +  +   +D+ S WN++IS   Q+G +
Sbjct: 175 LALKFGFMWDVYVAASLIHLYCRY-GAVVNARILFDEMPTRDMGS-WNAMISGYCQSGNA 232

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           +++  L   +R      DS T+++LL +  E      G  +H  ++      +L V+  L
Sbjct: 233 KEALTLSDGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKL 288

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + +Y++  SL+D + +FD+M  +D + WN +I AY  +  P  ++ L   M  S  + D 
Sbjct: 289 IDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDC 348

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFD 393
            T I+  S +S +  I   + +    LR G   + +++ N+++ MY +   ++ AR +F+
Sbjct: 349 LTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFN 408

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV--DFVTIINILPACVNIGAL 451
            +  K V+SW+++I GY  +  + EA+ +++ M+ EG E+  +  T +++LPAC   GAL
Sbjct: 409 WLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGAL 468

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
                LHG  +K GL     V T++   Y KCG ++ A  LF   +I   + + WN++I+
Sbjct: 469 RQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLF--YQIPRVNSVPWNTLIA 526

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            +  HG   +   L+ +M    V+PD ITF+ LL+AC ++GLV+EG   F+ M+  YG  
Sbjct: 527 CHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGIT 586

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           PS +HY  MV+L GRAG ++ A   +K MP +PDA +WG LLSAC++H   +L ++ +E 
Sbjct: 587 PSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEH 646

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  +EPE+ G +VLLSN+YA+AGKW GV ++R+    +GL+KTPG S +E+   V  F+ 
Sbjct: 647 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYT 706

Query: 692 ADQSHPQADAIYTILGILE 710
            +Q+HP  + +Y  L  L 
Sbjct: 707 GNQTHPMYEEMYRELTALH 725


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/696 (31%), Positives = 367/696 (52%), Gaps = 57/696 (8%)

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           A+   L  +Q+ F S+   ++ +  ++L +L +F      L  +K ++L  ++ +  +  
Sbjct: 41  ASCNALESAQETFTSV---DASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQD 97

Query: 136 FVIR-------SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY----IKCDGGFE 184
            ++        SC+ +     G ++H  ++ LGF+    +   LV FY    +  D    
Sbjct: 98  LIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVI 157

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            E   I   F      WN LIS  V+NG  +K+   +K M  +G   D+ T  ++L++  
Sbjct: 158 TENSNILHPFP-----WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACG 212

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           E   L  G+ VH     S     L V+ AL+SMY K   +  A+ LFDK+ ++D V WN 
Sbjct: 213 EELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNS 272

Query: 305 MIS-----------------------------------AYYQSGFPKESLELLMCMVRSG 329
           MIS                                    Y ++G  K +LELL  M + G
Sbjct: 273 MISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCG 332

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D    I  + + S + + + GK++H+  +R+      +V N+LI MY  C+DL  A 
Sbjct: 333 SHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAY 392

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +F  ++ K++++W+S+I G    D+S EA  L  EM L G+E ++VTI ++LP C  + 
Sbjct: 393 LLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVA 452

Query: 450 ALEHVKYLHGY-SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            L+H K  H Y + +        +  A+   YA+ G +  A  +FD   +  +D +T+ S
Sbjct: 453 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFD--MLGERDKMTYTS 510

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI+ Y   G+     KL+ +M    ++PD IT + +L+AC ++GLV +G+++F++M+  Y
Sbjct: 511 MIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLY 570

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G  P  EH+A M +L GRAG +++A+E++++MP+KP   +W  L+ AC++H  TE+ E  
Sbjct: 571 GLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWA 630

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AEKL+ M+PEN G YVL++N+YAAAG WN +AK+R F+RD G++K PGC+W+++G     
Sbjct: 631 AEKLLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSP 690

Query: 689 FWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
           F   D S+  AD IY +L  L + + E    SSE+ 
Sbjct: 691 FLVDDTSNANADEIYPLLEGLTMVMKEAGYISSEDF 726



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 217/478 (45%), Gaps = 51/478 (10%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLI 72
           V  +R  A+     +      SLL+ C + + L   +Q+H  +II  G  Q+ IL   L+
Sbjct: 84  VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHG-HIISLGFEQHPILVPKLV 142

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
             Y+   LL  +  +  +    +   +  ++ +  + G  +K L  YKQM  + + P   
Sbjct: 143 TFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNF 202

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TYP V+++C   LD   G+++H  +          V +AL+  Y KC      + G+ + 
Sbjct: 203 TYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKC-----GKVGIARD 257

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELF--------------------------- 221
            F  +  R    WNS+IS+    G   ++FELF                           
Sbjct: 258 LFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGN 317

Query: 222 --------KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
                     MR  G+  DS  LI  L +   +   +LG+ +H  A+ S F +  +V  A
Sbjct: 318 YKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNA 377

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MYS+   L+ A +LF  M  K  + WN +IS        +E+  LL  M+  G   +
Sbjct: 378 LITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPN 437

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCARKI 391
             T  + +   + + N++ GK+ H  + R   D++  + + N+L+DMY     +  AR++
Sbjct: 438 YVTIASVLPLCARVANLQHGKEFHCYMTRR-EDFKDHLLLWNALVDMYARSGKVLEARRV 496

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           FD +  +  ++++SMI GY    +   AL+LF EM    ++ D +T+I +L AC + G
Sbjct: 497 FDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSG 554


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/630 (32%), Positives = 351/630 (55%), Gaps = 10/630 (1%)

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
            +++T  NS + G + +     G   K L ++ Q+ L  + P   T+PF+ ++C+ L   
Sbjct: 14  LSTLTWWNSSIRGAVNQ-----GNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHL 68

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            + + IH  VVK  F S   V  A+V+ Y+KC G  ++   +  +      + WN++I  
Sbjct: 69  TNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKC-GKVDDAYNLFDKMPVRNIASWNAMIIG 127

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             Q G  ++ F LF  MR+ G   D+ T+I L R+ +  KSL   + VH + + +    D
Sbjct: 128 FSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDAD 187

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDR--VVWNIMISAYYQSGFPKESLELLMCM 325
            SV+   ++ YSK   L+ AKM+F  +    R  V WN +I+ Y   G   ++++    +
Sbjct: 188 TSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGL 247

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           +  GF+ D  T I+ +SS    + + +G  +H +  + G D  +S+ N+LI MY  C D+
Sbjct: 248 LCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDI 307

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           + A  +FD +  +T VSW++MI GY    +  +AL LF+ M+  G + D VT+++++  C
Sbjct: 308 SSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGC 367

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
              GAL    ++  Y+    L     V  A+   YAKCG +  A E+F    + ++ +++
Sbjct: 368 GKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIF--YSLPNRTVVS 425

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W +MI+A A +G++ +   L++ + +S + P+ ITFL +L AC + G +E+GR  F  M 
Sbjct: 426 WTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMT 485

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           E YG  P  +HY+ M++LLGR G + EA E+++DMP KPD  +WG LL ACK+H+  E+ 
Sbjct: 486 ERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIG 545

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           E  +  L  ++P  A ++V ++NIYA+ G+W+ VA MR  +R   ++K+PG S +++  +
Sbjct: 546 EYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQVNGM 605

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME 715
            H F+  D+SH  +  IY  LG L +++ +
Sbjct: 606 SHVFFVEDRSHHDSLLIYEALGNLAMQMKQ 635



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 8/169 (4%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           + LNC  K+       T+  W+S I+G V    + +AL LF ++KL G++ +  T   + 
Sbjct: 6   QHLNCFSKL------STLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLS 59

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  +  L + + +H + +K    S   V TA+   Y KCG ++ A  LFD  K+  ++
Sbjct: 60  KACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFD--KMPVRN 117

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           I +WN+MI  +++ G   + F L+  M+    RPD  T +GL  A ++A
Sbjct: 118 IASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISA 166



 Score = 40.0 bits (92), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/87 (22%), Positives = 49/87 (56%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y  LH L +++++ + LID YA  G L+ ++++F S+ +   + +  ++   +  GE+ +
Sbjct: 382 YASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFRE 441

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSC 141
            L ++  ++   + P   T+  V+++C
Sbjct: 442 ALDLFSLLSESGIEPNNITFLAVLQAC 468


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/712 (32%), Positives = 393/712 (55%), Gaps = 51/712 (7%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL---LSLSQQVF-NSIT 92
           S L  C+    L+  H R +   GL  ++   + L+     LG    LS +++VF NS +
Sbjct: 37  SSLKNCKTIDELKMFH-RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
                +Y ++++  +  G   + +L++ +M    + P + T+PF + +C+      +G +
Sbjct: 96  YGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ 155

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           IH  +VK+G+     V ++LV FY +C      E    ++ F ++  R    W S+I   
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAEC-----GELDSARKVFDEMSERNVVSWTSMICGY 210

Query: 209 VQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CK 266
            +   ++ + +LF +++R E    +S T++ ++ +  +L+ LE G  V+     S     
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVN 270

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           DL V +AL+ MY K  +++ AK LFD+    +  + N M S Y + G  +E+L +   M+
Sbjct: 271 DLMV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            SG R D  + ++A+SS S ++NI WGK  H  VLRNG +   ++ N+LIDMY +C   +
Sbjct: 330 DSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQD 389

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQ-----------------------------SL 417
            A +IFD +  KTVV+W+S++ GYV + +                             SL
Sbjct: 390 TAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSL 449

Query: 418 --EALRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
             EA+ +F  M+  EGV  D VT+++I  AC ++GAL+  K+++ Y  K G+     + T
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
            +   +++CG  E A  +F+   + ++D+  W + I A A  G+  +  +L+  M +  +
Sbjct: 510 TLVDMFSRCGDPESAMSIFN--SLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGL 567

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD + F+G LTAC + GLV++G+ IF  M + +G  P   HY  MV+LLGRAG ++EA 
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           +L++DMP +P+  +W  LL+AC++    E+A   AEK+  + PE  G+YVLLSN+YA+AG
Sbjct: 628 QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +WN +AK+R  ++++GL+K PG S I+I    HEF + D+SHP+   I  +L
Sbjct: 688 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAML 739


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 330/594 (55%), Gaps = 37/594 (6%)

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEF-YIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
           F + ++IH+Q++K G  +       L+EF  I   G       + +   +  +  WN++I
Sbjct: 45  FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMI 104

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
                +     + + +  M + G E +S T   LL+S  ++ + + G+ +H   +     
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLE 164

Query: 266 KDLSVNTALLSMYSK-------------------------------LASLEDAKMLFDKM 294
            D  V+T+L++MY++                                  L+DA+ LF+++
Sbjct: 165 SDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEI 224

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
             +D V WN MI+ Y QSG  +E+L     M R+    +  T +  +S+ +   ++E G 
Sbjct: 225 PVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGN 284

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
            + + +  +G    + + N+LIDMY +C DL+ AR +F+ +  K ++SW+ MI GY   +
Sbjct: 285 WVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMN 344

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK--LGLNSLSSV 472
              EAL LF +M+   VE + VT ++ILPAC  +GAL+  K++H Y  K  LGL + +S+
Sbjct: 345 SYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTN-TSL 403

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            T++   YAKCG IE A ++F   K   K + +WN+MIS  A HG  +   +L+ QM+  
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGHANMALELFRQMRDE 461

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD ITF+G+L+AC +AGLVE GR  F  M E Y   P  +HY  M++LLGRAG  DE
Sbjct: 462 GFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDE 521

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A  L+K+M  KPD  +WG LL AC++H   EL E  A+ L  +EPEN G YVLLSNIYA 
Sbjct: 522 AEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYAT 581

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           AG+W+ VA++RT L D+G+KK PGCS IE+  +VHEF   D+ H Q+  IY +L
Sbjct: 582 AGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKML 635



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 163/609 (26%), Positives = 283/609 (46%), Gaps = 71/609 (11%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSIT 92
           S +LL+ C++ Q+L+QIH++ II  GLH      S LI+  + +  G LS +  +F SI 
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQ-IIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            PN  ++ T+++  S        +  Y +M L  + P   T+PF+++SC+ +     G++
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIK-CDGGFE----------------------NEKGM 189
           IH  V+KLG +S   V  +L+  Y +  + G+                         +G 
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 190 I---QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           +   +R F+++  R    WN++I+   Q+G+ E++   F+ M+      +  T++ +L +
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             +  SLELG  V           +L +  AL+ MYSK   L+ A+ LF+ + +KD + W
Sbjct: 274 CAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISW 333

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N+MI  Y      KE+L L   M +S    +  T ++ + + + +  ++ GK +HA + +
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDK 393

Query: 363 NGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
                   S+  SLIDMY +C ++  A+++F  +K K++ SW++MI G   H  +  AL 
Sbjct: 394 KFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALE 453

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF +M+ EG E D +T + +L AC + G +E           LG    SS          
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHAGLVE-----------LGRQCFSS---------- 492

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
                     + ++  I  K +  +  MI    + G + +   L   MK  +++PD   +
Sbjct: 493 ----------MVEDYDISPK-LQHYGCMIDLLGRAGLFDEAEAL---MKNMEMKPDGAIW 538

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             LL AC   G VE G    K + E     P    Y  + N+   AG  D+   +   + 
Sbjct: 539 GSLLGACRVHGNVELGEFAAKHLFELEPENPGA--YVLLSNIYATAGRWDDVARIRTKLN 596

Query: 602 FKPDARVWG 610
            K   +V G
Sbjct: 597 DKGMKKVPG 605


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/661 (33%), Positives = 363/661 (54%), Gaps = 12/661 (1%)

Query: 51   IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
            +HA  I L GL  N+ + S+L+  Y+    +  + +VF ++   N + +  +++  +  G
Sbjct: 349  VHAEAIKL-GLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407

Query: 111  EYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            E  K + ++  M   S Y  +D T+  ++ +C+   D   G + H+ ++K        VG
Sbjct: 408  ESHKVMELFMDMK-SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVG 466

Query: 170  DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            +ALV+ Y KC G  E+ + + +R        WN++I   VQ+    ++F+LFK M + G 
Sbjct: 467  NALVDMYAKC-GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGI 525

Query: 230  EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
              D   L + L++   +  L  G+ VHC++V     +DL   ++L+ MYSK   ++DA+ 
Sbjct: 526  VSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARK 585

Query: 290  LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            +F  + +   V  N +I+ Y Q+   +E++ L   M+  G      T    V +    ++
Sbjct: 586  VFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPES 644

Query: 350  IEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMI 407
            +  G Q H  + + G S     +  SL+ MY     +  A  +F  + + K++V W+ M+
Sbjct: 645  LTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMM 704

Query: 408  KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-- 465
             G+  +    EAL+ + EM+ +GV  D  T + +L  C  + +L   + +H     L   
Sbjct: 705  SGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHD 764

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            L+ L+S NT I + YAKCG ++ + ++FDE +  S ++++WNS+I+ YAK+G      K+
Sbjct: 765  LDELTS-NTLIDM-YAKCGDMKGSSQVFDEMRRRS-NVVSWNSLINGYAKNGYAEDALKI 821

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            +  M+QS + PD ITFLG+LTAC +AG V +GR IF+ M   YG E   +H A MV+LLG
Sbjct: 822  FDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLG 881

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            R G++ EA + ++    KPDAR+W  LL AC++H +    E++AEKLI +EP+N+  YVL
Sbjct: 882  RWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVL 941

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            LSNIYA+ G W     +R  +RDRG+KK PG SWI++ +  H F A D+SH +   I   
Sbjct: 942  LSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMF 1001

Query: 706  L 706
            L
Sbjct: 1002 L 1002



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/551 (27%), Positives = 263/551 (47%), Gaps = 13/551 (2%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I++Y  LG L  ++ +F  ++SP+ + +  ++    K G     +  +  M   S+  
Sbjct: 266 TVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKS 325

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T   V+ +   + +   G  +HA+ +KLG  S   VG +LV  Y KC+     +   
Sbjct: 326 TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCE-----KMEA 380

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
             + F+ L+ +    WN++I     NG+S K  ELF  M+  G   D  T  +LL +   
Sbjct: 381 AAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAA 440

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
              LE+G   H + +     K+L V  AL+ MY+K  +LEDA+ +F++M D+D V WN +
Sbjct: 441 SHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTI 500

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I +Y Q     E+ +L   M   G  +D     + + + + +  +  GKQ+H   ++ G 
Sbjct: 501 IGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGL 560

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D  +   +SLIDMY +C  +  ARK+F S+   +VVS +++I GY + +   EA+ LF E
Sbjct: 561 DRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY-SQNNLEEAVVLFQE 619

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS-VNTAIFISYAKCG 484
           M   GV    +T   I+ AC    +L      HG   K G +S    +  ++   Y    
Sbjct: 620 MLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSR 679

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  LF E     K I+ W  M+S ++++G + +  K Y +M+   V PD  TF+ +
Sbjct: 680 GMTEACALFSELS-SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTV 738

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L  C     + EGR I   +     ++  +    +++++  + G M  + ++  +M  + 
Sbjct: 739 LRVCSVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRS 797

Query: 605 DARVWGPLLSA 615
           +   W  L++ 
Sbjct: 798 NVVSWNSLING 808



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/566 (25%), Positives = 269/566 (47%), Gaps = 48/566 (8%)

Query: 43  ENPQHL-------QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           E PQ L       + +H++ +IL G+     L + ++D YA    +S +++ F+ +   +
Sbjct: 67  EMPQRLALALRIGKAVHSKSLIL-GIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKD 124

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
              + ++L   S  G+  K L  +  +    ++P + T+  V+ +C+   +   G +IH 
Sbjct: 125 VTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHC 184

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
            ++K+G +     G ALV+ Y KCD    + + + +         W  L S  V+ G  E
Sbjct: 185 SMIKMGLERNSYCGGALVDMYAKCD-RISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPE 243

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++  +F+ MR EG   D    + +                              +NT   
Sbjct: 244 EAVLVFERMRDEGHRPDHLAFVTV------------------------------INT--- 270

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
             Y +L  L+DA++LF +MS  D V WN+MIS + + G    ++E    M +S  ++   
Sbjct: 271 --YIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRS 328

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  + +S+I  + N++ G  +HA  ++ G    + V +SL+ MY +CE +  A K+F+++
Sbjct: 329 TLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEAL 388

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + K  V W++MI+GY  + +S + + LF +MK  G  +D  T  ++L  C     LE   
Sbjct: 389 EEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGS 448

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
             H   +K  L     V  A+   YAKCG +E A ++F  E++  +D +TWN++I +Y +
Sbjct: 449 QFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIF--ERMCDRDNVTWNTIIGSYVQ 506

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
             + S+ F L+ +M    +  D       L AC +   + +G+ +   +    G +    
Sbjct: 507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHC-LSVKCGLDRDLH 565

Query: 576 HYASMVNLLGRAGHMDEARELVKDMP 601
             +S++++  + G + +AR++   +P
Sbjct: 566 TGSSLIDMYSKCGIIKDARKVFSSLP 591



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 158/614 (25%), Positives = 284/614 (46%), Gaps = 52/614 (8%)

Query: 18  FLRFPANQTRPHMTATHSFSL-LNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLID 73
           F+    NQ  P+     +FS+ L+ C    N +  +QIH   I + GL +N      L+D
Sbjct: 148 FVSLFENQIFPN---KFTFSIVLSTCARETNVEFGRQIHCSMIKM-GLERNSYCGGALVD 203

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
            YA    +S +++VF  I  PN++ +  +     K G  E+ +LV+++M  +   P    
Sbjct: 204 MYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLA 263

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           +  VI +      +I   K+    +  G  S  DV                         
Sbjct: 264 FVTVINT------YIRLGKLKDARLLFGEMSSPDV------------------------- 292

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
                  WN +IS   + G    + E F  MR    +    TL ++L +   + +L+LG 
Sbjct: 293 -----VAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGL 347

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           +VH  A+      ++ V ++L+SMYSK   +E A  +F+ + +K+ V WN MI  Y  +G
Sbjct: 348 VVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNG 407

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
              + +EL M M  SG+  D FT  + +S+ +   ++E G Q H+ +++      + V N
Sbjct: 408 ESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGN 467

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +L+DMY +C  L  AR+IF+ +  +  V+W+++I  YV  +   EA  LF  M L G+  
Sbjct: 468 ALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS 527

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D   + + L AC ++  L   K +H  S+K GL+      +++   Y+KCG I+ A ++F
Sbjct: 528 DGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVF 587

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
               +    +++ N++I+ Y+++ +  +   L+ +M    V P  ITF  ++ AC     
Sbjct: 588 --SSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPES 644

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYA-SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           +  G     ++ +  G+    E+   S++ +   +  M EA  L  ++       +W  +
Sbjct: 645 LTLGTQFHGQITKR-GFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGM 703

Query: 613 LSACKMHSETELAE 626
           +S    HS+    E
Sbjct: 704 MSG---HSQNGFYE 714



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 170/375 (45%), Gaps = 40/375 (10%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L +G+ VH  +++     +  +  A++ +Y+K A +  A+  FD + +KD   WN M+S
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLS 133

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            Y   G P + L   + +  +    + FT    +S+ +   N+E+G+Q+H ++++ G + 
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
                 +L+DMY +C+ ++ AR++F+ +     V W+ +  GYV      EA+ +F  M+
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            EG   D +  + ++   + +G L+  + L G                            
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLGKLKDARLLFG---------------------------- 285

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
                    ++ S D++ WN MIS + K G  +   + +  M++S V+    T   +L+A
Sbjct: 286 ---------EMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSA 336

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
                 ++ G ++  E  +  G   +    +S+V++  +   M+ A ++ + +  K D  
Sbjct: 337 IGIVANLDLGLVVHAEAIK-LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDV- 394

Query: 608 VWGPLLSACKMHSET 622
            W  ++     + E+
Sbjct: 395 FWNAMIRGYAHNGES 409


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/697 (32%), Positives = 383/697 (54%), Gaps = 6/697 (0%)

Query: 17  KFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           +F+R  + +   ++ A+   +   L    Q LQ +H  +++  G  Q++ + ++LID YA
Sbjct: 143 RFMRSCSEKPNEYILASVVRACTQLGNLSQALQ-LHG-FVVKGGFVQDVYVGTSLIDFYA 200

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
             G +  ++ +F+ +    ++ +  I+   +K G  E +L ++ QM    +YP       
Sbjct: 201 KRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISS 260

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           V+ +CS L     G++IH  V++ GFD    V + +++FY+KC       K   +   KD
Sbjct: 261 VLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKD 320

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           + S W ++I+  +QN     + +LF  M  +G + D+    ++L S   L++L+ GR VH
Sbjct: 321 VVS-WTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVH 379

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
             A+  +   D  V   L+ MY+K  SL +A+ +FD ++  + V +N MI  Y +     
Sbjct: 380 AYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLV 439

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+L+L   M  S     L T ++ +   S++  +E   Q+H  +++ G        ++LI
Sbjct: 440 EALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALI 499

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           D+Y +C  +  AR +F+ +  + +V W++M  GY    ++ E+L+L+ ++++  ++ +  
Sbjct: 500 DVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEF 559

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T   ++ A  NI +L H +  H   +K+GL+    V  ++   YAKCG IE + + F   
Sbjct: 560 TFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAF--S 617

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
             + +DI  WNSMIS YA+HGD ++  +++ +M    V+P+ +TF+GLL+AC +AGL++ 
Sbjct: 618 STNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDL 677

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G   F+ M + +G EP  +HYA MV+LLGRAG + EA+E VK MP KP A VW  LLSAC
Sbjct: 678 GFHHFESMSK-FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSAC 736

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           ++    EL    AE  IS +P ++G+Y+LLSNI+A+ G W  V  +R  +    + K PG
Sbjct: 737 RVSGHVELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPG 796

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            SWIE+   VH F A D +H  +  I  +L  L L+I
Sbjct: 797 WSWIEVNNEVHRFIARDTAHRDSTLISLVLDNLILQI 833



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 323/615 (52%), Gaps = 22/615 (3%)

Query: 46  QHLQQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
            + ++IHA  ++L G HQ ++ L + L+ +Y+ + L S +Q++F+++   N + + +++ 
Sbjct: 68  HYYKKIHAHIVVL-GFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVS 126

Query: 105 NLSKFGEYEKTLLVY-KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
             ++ G   + LL++ + M   S  P E     V+R+C+ L +     ++H  VVK GF 
Sbjct: 127 MYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFV 186

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
               VG +L++FY K   G+ +E  +I   F  LK +    W ++I+   + G+SE S +
Sbjct: 187 QDVYVGTSLIDFYAK--RGYVDEARLI---FDGLKVKTTVTWTAIIAGYAKLGRSEVSLK 241

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  MR      D   + ++L +   L+ LE G+ +H   +   F  D+SV   ++  Y 
Sbjct: 242 LFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYL 301

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K   ++  + LF+++ DKD V W  MI+   Q+ F  ++++L + MVR G++ D F   +
Sbjct: 302 KCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTS 361

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            ++S  +++ ++ G+Q+HA  ++   D    V N LIDMY +C+ L  ARK+FD V    
Sbjct: 362 VLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAIN 421

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           VVS+++MI+GY   D+ +EAL LF EM+L       +T +++L    ++  LE    +H 
Sbjct: 422 VVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHC 481

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             +K G++  S   +A+   Y+KC C+  A  +F+E  I  +DI+ WN+M S Y++  + 
Sbjct: 482 LIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEE--IYDRDIVVWNAMFSGYSQQLEN 539

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +  KLY  ++ S ++P+  TF  ++ A  N   +  G+    ++ +  G +       S
Sbjct: 540 EESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIK-MGLDDDPFVTNS 598

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI--SMEP 637
           +V++  + G ++E+ +       + D   W  ++S    H +   A    E++I   ++P
Sbjct: 599 LVDMYAKCGSIEESHKAFSSTN-QRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKP 657

Query: 638 ENAGNYVLLSNIYAA 652
               NYV    + +A
Sbjct: 658 ----NYVTFVGLLSA 668


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 231/712 (32%), Positives = 393/712 (55%), Gaps = 51/712 (7%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL---LSLSQQVF-NSIT 92
           S L  C+    L+  H R +   GL  ++   + L+     LG    LS +++VF NS +
Sbjct: 37  SSLKNCKTIDELKMFH-RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSES 95

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
                +Y ++++  +  G   + +L++ +M    + P + T+PF + +C+      +G +
Sbjct: 96  YGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ 155

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           IH  +VK+G+     V ++LV FY +C      E    ++ F ++  R    W S+I   
Sbjct: 156 IHGLIVKMGYAKDLFVQNSLVHFYAEC-----GELDSARKVFDEMSERNVVSWTSMICGY 210

Query: 209 VQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CK 266
            +   ++ + +LF +++R E    +S T++ ++ +  +L+ LE G  V+     S     
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVN 270

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           DL V +AL+ MY K  +++ AK LFD+    +  + N M S Y + G  +E+L +   M+
Sbjct: 271 DLMV-SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMM 329

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            SG R D  + ++A+SS S ++NI WGK  H  VLRNG +   ++ N+LIDMY +C   +
Sbjct: 330 DSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQD 389

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQ-----------------------------SL 417
            A +IFD +  KTVV+W+S++ GYV + +                             SL
Sbjct: 390 TAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSL 449

Query: 418 --EALRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
             EA+ +F  M+  EGV  D VT+++I  AC ++GAL+  K+++ Y  K G+     + T
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
            +   +++CG  E A  +F+   + ++D+  W + I A A  G+  +  +L+  M +  +
Sbjct: 510 TLVDMFSRCGDPESAMSIFN--SLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGL 567

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD + F+G LTAC + GLV++G+ IF  M + +G  P   HY  MV+LLGRAG ++EA 
Sbjct: 568 KPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAV 627

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           +L++DMP +P+  +W  LL+AC++    E+A   AEK+  + PE  G+YVLLSN+YA+AG
Sbjct: 628 QLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 687

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +WN +AK+R  ++++GL+K PG S I+I    HEF + D+SHP+   I  +L
Sbjct: 688 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAML 739


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 340/577 (58%), Gaps = 15/577 (2%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGF---DSFDDVGDALVEFYIKCDGGFENEKGM 189
           T+P ++R+        +  ++HA  ++LG    D+F     ALV  Y++     +  +  
Sbjct: 73  TFPPLLRAAQ---GPGTAAQLHACALRLGLLRGDAF--ASGALVHAYLRFGRVRDAYRAF 127

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
            + + +D+ + WN+++S   +N ++ ++  LF  M MEG   D+ T+ ++L   V L   
Sbjct: 128 DEMRHRDVPA-WNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            L   +H  AV      +L V  A++ +Y KL  LE+ + +FD MS +D V WN +IS +
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY-Q 368
            Q G    ++E+   M  SG   D+ T ++  S+I+   +I  G+ +H  ++R G D   
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-K 427
           +   N+++DMY +   +  A+++FDS+  +  VSW+++I GY+ +  + EA+ ++  M K
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQK 366

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            EG++    T +++LPA  ++GAL+    +H  S+K GLN    V T +   YAKCG ++
Sbjct: 367 HEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLD 426

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  LF  E+   +    WN++IS    HG  ++   L++QM+Q  + PD +TF+ LL A
Sbjct: 427 EAMLLF--EQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAA 484

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C +AGLV++GR  F  M+ +YG +P  +HYA MV++ GRAG +D+A + +++MP KPD+ 
Sbjct: 485 CSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSA 544

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           +WG LL AC++H   E+ ++ ++ L  ++P+N G YVL+SN+YA  GKW+GV ++R+ +R
Sbjct: 545 IWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVR 604

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQS--HPQADAI 702
            + L+KTPG S IE+ + V+ F++ +Q   HPQ + I
Sbjct: 605 RQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEI 641



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 175/354 (49%), Gaps = 17/354 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y + HGL   L + + +ID Y  LG+L   ++VF+ ++S + + + +I+    + G+   
Sbjct: 195 YAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVAS 254

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GDALV 173
            + ++  M    + P   T   +  + +   D   G  +H  +V+ G+D  D + G+A+V
Sbjct: 255 AVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIV 314

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM-RMEG 228
           + Y K      ++    QR F  +  R    WN+LI+  +QNG + ++  ++  M + EG
Sbjct: 315 DMYAKL-----SKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEG 369

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +   GT +++L +   L +L+ G  +H +++ +    D+ V T ++ +Y+K   L++A 
Sbjct: 370 LKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAM 429

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +LF++   +    WN +IS     G   ++L L   M + G   D  T ++ +++ S   
Sbjct: 430 LLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAG 489

Query: 349 NIEWGKQMHANVLRNGSDYQ-VSVHNS-LIDMYCECEDLNCARKIFDSVKTKTV 400
            ++ G+    N+++     + ++ H + ++DM+     L+ A   FD ++   +
Sbjct: 490 LVDQGRNFF-NMMQTAYGIKPIAKHYACMVDMFGRAGQLDDA---FDFIRNMPI 539


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/677 (32%), Positives = 356/677 (52%), Gaps = 87/677 (12%)

Query: 132 DTYPFVIRSCSCL---LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK- 187
           D+ PF     SC+   L  I    +HA V+K GF +   + + L++ Y KC G  E+ + 
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKC-GSLEDGRQ 76

Query: 188 ---GMIQRK-----------------------FKDLKSR----WNSLISLAVQNGKSEKS 217
               M QR                        F+ +  R    WNS++S   Q+ + E++
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
              F +M  EG   +  +  ++L +   L  +  G  VH +   S F  D+ + +AL+ M
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           YSK  ++ DA+ +FD+M D++ V WN +I+ + Q+G   E+L++   M+ S    D  T 
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            + +S+ +++  I+ G+++H  V++N      + + N+ +DMY +C  +  AR IFDS+ 
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP 316

Query: 397 TKTV-------------------------------VSWSSMIKGYVTHDQSLEALRLFSE 425
            + V                               VSW+++I GY  + ++ EAL LF  
Sbjct: 317 IRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCL 376

Query: 426 MKLEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGYSMKLGLNSLSSVNTAIFIS 479
           +K E V     +  NIL AC ++  L      HV  L HG+  + G      V  ++   
Sbjct: 377 LKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDM 436

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KCGC+E    +F   K+  +D ++WN+MI  +A++G  ++  +L+ +M +S  +PD I
Sbjct: 437 YVKCGCVEEGYLVF--RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T +G+L+AC +AG VEEGR  F  M   +G  P ++HY  MV+LLGRAG ++EA+ ++++
Sbjct: 495 TMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEE 554

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP +PD+ +WG LL+ACK+H    L +  AEKL+ +EP N+G YVLLSN+YA  GKW  V
Sbjct: 555 MPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDV 614

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
             +R  +R  G+ K PGCSWI+I    H F   D+SHP+   I+++L IL   I E R E
Sbjct: 615 MNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDIL---IAEMRPE 671

Query: 720 ---------SSEELKFS 727
                    SSEE+ +S
Sbjct: 672 QDHTEIGSLSSEEMDYS 688



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 147/578 (25%), Positives = 265/578 (45%), Gaps = 88/578 (15%)

Query: 18  FLRFPANQTRPHMTATHSFS-LLNLCENPQHLQQIHARYI----ILHGLHQNLILSSNLI 72
           FL+  A+ +    T +  F+ LL+ C   + L  I+ RY+    I  G    + + + LI
Sbjct: 6   FLKLAADLSS--FTDSSPFAKLLDSCIKSK-LSAIYVRYVHASVIKSGFSNEIFIQNRLI 62

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG---------------------- 110
           D+Y+  G L   +QVF+ +   N   + +++  L+K G                      
Sbjct: 63  DAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNS 122

Query: 111 ---------EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
                      E+ L  +  M  +     E ++  V+ +CS L D   G ++H+ + K  
Sbjct: 123 MVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSP 182

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKS 217
           F S   +G ALV+ Y KC  G  N+    QR F ++  R    WNSLI+   QNG + ++
Sbjct: 183 FLSDVYIGSALVDMYSKC--GNVNDA---QRVFDEMGDRNVVSWNSLITCFEQNGPAVEA 237

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK-DLSVNTALLS 276
            ++F++M     E D  TL +++ +   L ++++G+ VH   V +D  + D+ ++ A + 
Sbjct: 238 LDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVD 297

Query: 277 MYSKLASLEDAKMLFD-------------------------------KMSDKDRVVWNIM 305
           MY+K + +++A+ +FD                               KM++++ V WN +
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNAL 357

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+ Y Q+G  +E+L L   + R       ++    + + + +  +  G Q H +VL++G 
Sbjct: 358 IAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGF 417

Query: 366 DYQ------VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            +Q      + V NSLIDMY +C  +     +F  +  +  VSW++MI G+  +    EA
Sbjct: 418 KFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEA 477

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFI 478
           L LF EM   G + D +T+I +L AC + G +E  + Y    +   G+  L    T +  
Sbjct: 478 LELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVD 537

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
              + G +E A  + +E  +   D + W S+++A   H
Sbjct: 538 LLGRAGFLEEAKSMIEEMPM-QPDSVIWGSLLAACKVH 574


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/660 (32%), Positives = 369/660 (55%), Gaps = 18/660 (2%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           +++   FSLL +C+    L++IHA  +++HGL ++L+  + L+  Y + G +  ++ +F+
Sbjct: 37  ISSNPCFSLLGICKTVSSLRKIHA-LLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFD 95

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT-YPFVIRSCSCLLDFI 148
            I +P+   +  +++       Y + +  Y     + +   ++  +  V+++CS L +  
Sbjct: 96  RIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETD 155

Query: 149 SGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
            G K+H Q+VK+G  DSF  V   LV+ Y KC      E    +R F ++  R    W S
Sbjct: 156 EGRKLHCQIVKVGSPDSF--VLTGLVDMYAKC-----REVEDSRRVFDEILDRNVVCWTS 208

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +I   VQN   ++   LF  MR    E +  TL +L+ +  +L +L  G+ VH   + S 
Sbjct: 209 MIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSG 268

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  +  + T LL +Y K   + DA  +FD++S  D V W  MI  Y Q G+P+E+L+L  
Sbjct: 269 FDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFT 328

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
                    +  T  + +S+ +   ++  G+ +H   ++ GS+   +  N+L+DMY +C 
Sbjct: 329 DERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSE-DATFENALVDMYAKCH 387

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  AR +F++V  K V++W+S+I GY  +  + EAL LF +M+ + V  D +T++++L 
Sbjct: 388 MIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLS 447

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSS-VNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           AC ++GA      LHGY++K GL S S  V TA+   YAKCG  E A  +FDE  +  K+
Sbjct: 448 ACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDE--MGEKN 505

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            ITW++MI  Y   GD S+  +L+  M +  + P+ + F  +L+AC ++G++ EG   F 
Sbjct: 506 TITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFN 565

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M + Y + PS +HYA MV+LL RAG ++EA + ++ +P +PD  + G  L  C++HS  
Sbjct: 566 TMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRF 625

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           +L E+   +++ + P+ A  YVL+SN+YA+ G+W+   ++   ++ RGL K PG S ++I
Sbjct: 626 DLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDI 685


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/715 (31%), Positives = 375/715 (52%), Gaps = 71/715 (9%)

Query: 54  RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           R +++   H N+I  + +++ YA LG LS + ++F  + + +   + T++    +  +Y 
Sbjct: 80  RLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYL 139

Query: 114 KTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD--VGD 170
            +L  +  M      +P   T    ++SC  L       ++ A V K  FDS DD  V  
Sbjct: 140 VSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQK--FDSQDDSEVAA 197

Query: 171 ALVEFYIKCDGGFE---------NEKGMIQRK------------------FKDLKSR--- 200
           ALV+ +++C G  +          E  M  R                   F  +  R   
Sbjct: 198 ALVDMFVRC-GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVV 256

Query: 201 -WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN ++S   Q+G+  ++ ++   M+ +G   DS T  + L +   L SL  G+ +H   
Sbjct: 257 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 316

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + +    D  V +AL+ +Y+K    ++AK +F+ + D++ V W ++IS + Q G   ES+
Sbjct: 317 IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESV 376

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL   M       D F     +S   +  ++  G+Q+H+  L++G    V V NSLI MY
Sbjct: 377 ELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMY 436

Query: 380 CECEDLNCA-------------------------------RKIFDSVKTKTVVSWSSMIK 408
            +C++L  A                               R+ FD +  K V++W++M+ 
Sbjct: 437 AKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLG 496

Query: 409 GYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            Y+ H    + LR++  M   E V  D+VT + +   C ++GA +    + G ++K+GL 
Sbjct: 497 AYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLI 556

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
             +SV  A+   Y+KCG I  A ++FD   ++ KDI++WN+MI+ Y++HG   Q  +++ 
Sbjct: 557 IDTSVANAVITMYSKCGRILEARKVFDF--LNVKDIVSWNAMITGYSQHGMGKQAIEIFD 614

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            + +   +PD I+++ +L+ C ++GLV+EG+  F  MK ++   P  EH++ MV+LLGRA
Sbjct: 615 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRA 674

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           GH+ EA++L+ DMP KP A VWG LLSACK+H   ELAEL A+ +  ++  ++G+Y+L++
Sbjct: 675 GHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 734

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            IYA AGK +  A++R  +RD+G+KK PG SW+E+   VH F A D SHPQ  AI
Sbjct: 735 KIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAI 789



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 187/399 (46%), Gaps = 36/399 (9%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA+ +I +  H +  ++S L++ YA  G    ++ VFNS+   N++ +  ++    +
Sbjct: 310 KQLHAQ-VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQ 368

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           +G + +++ ++ QM  + M   +     +I  C   +D   G ++H+  +K G      V
Sbjct: 369 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 428

Query: 169 GDALVEFYIKCDG--------GFENEKGMIQ-----------------RKFKDLKSR--- 200
            ++L+  Y KCD          F NEK ++                  R+F D  S    
Sbjct: 429 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 488

Query: 201 --WNSLISLAVQNGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
             WN+++   +Q+G  E    ++K+M   E    D  T + L +   +L + +LG  +  
Sbjct: 489 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIG 548

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
             V      D SV  A+++MYSK   + +A+ +FD ++ KD V WN MI+ Y Q G  K+
Sbjct: 549 RTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 608

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN--SL 375
           ++E+   +++ G + D  + +A +S  S    ++ GK  + ++++   +    + +   +
Sbjct: 609 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGK-FYFDMMKRAHNISPGLEHFSCM 667

Query: 376 IDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTH 413
           +D+      L  A+ + D +  K T   W +++     H
Sbjct: 668 VDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIH 706



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 68/323 (21%)

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK-------------------------- 390
           H  ++  G    V + N+L+  Y  C  L+ AR+                          
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 391 ------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE-VDFVTIINILP 443
                 +F  +  + V SW++++ GY    Q L +L  F  M   G    +  T+   + 
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE-------- 495
           +C  +G       L     K      S V  A+   + +CG +++A  LF          
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 496 ------------------EKIDS---KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
                             E  DS   +D+++WN M+SA ++ G   +   +   M+   V
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDE 592
           R D  T+   LTAC     +  G+ +  ++  +    P  + Y  +++V L  ++G   E
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFKE 343

Query: 593 ARELVKDMPFKPDARVWGPLLSA 615
           A+ +   +  + +   W  L+S 
Sbjct: 344 AKGVFNSLHDRNNV-AWTVLISG 365


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/705 (31%), Positives = 382/705 (54%), Gaps = 19/705 (2%)

Query: 21  FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQN----LILSSNLIDSYA 76
           F    +  H   +   SL+  C N + L   +A+ I  H L  N    +IL +++I+ Y 
Sbjct: 148 FHLKNSNSHFEPSTYTSLVLACANFRSLD--YAKKIHDHVLKSNYQPSIILQNHMINMYG 205

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
             G +  +++VF+++  PN + + +++   S+ G+    +++Y QM     +P + T+  
Sbjct: 206 KCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGS 265

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFK 195
           VI++C    D   G ++HA V+K  F       +AL+  Y    G  E+   +  R   K
Sbjct: 266 VIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNF-GQIEHASNVFTRIPTK 324

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFDSGTLINLLRSTVELKSLEL 251
           DL S W ++I+  +Q G   ++  LF+ +  +G     EF  G++ +   S +EL   E 
Sbjct: 325 DLIS-WGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLEL---EY 380

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G+ VH + V     +++    +L  MY+K   L  AKM F ++ + D V WN +I+A+  
Sbjct: 381 GKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFAD 440

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G   E+++    M+  G   D  T I+ + +  +   +  G+Q+H+ +++ G D +++V
Sbjct: 441 NGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITV 500

Query: 372 HNSLIDMYCECEDLNCARKIF-DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
            NSL+ MY +C  L+ A  +F D  +   +VSW++++   +   Q  E  RL+ EM   G
Sbjct: 501 CNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSG 560

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
            + D +TI  +L  C  + +L     +H YS+K GL    SV   +   YAKCG ++ A 
Sbjct: 561 NKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHAR 620

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++FD  +  + DI++W+S+I  YA+ G   +   L+  M    V+P+ +T+LG L+AC +
Sbjct: 621 DVFDSTQ--NLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSH 678

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
            GLVEEG  ++K M+  +G  P++EH++ +V+LL RAG + EA   ++      D   W 
Sbjct: 679 IGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWK 738

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LL+ACK H+  ++AE  A  ++ ++P N+   V+L NI+A+AG W  VAK+R  ++  G
Sbjct: 739 TLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMG 798

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++K PG SWIE+    H F++ D SHPQ + IYT+L  L  ++++
Sbjct: 799 VQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTMLEELWSQVLD 843


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/691 (31%), Positives = 386/691 (55%), Gaps = 36/691 (5%)

Query: 49  QQIHAR-YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +QIHA  +   +G   ++ + + L++ Y   G L  + +VF+ IT  + + + +I+  L 
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALC 89

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD---FISGEKIHAQVVKLG-FD 163
           +F E+E  +  ++ M ++   P+  T   +  +CS L        G++IH    + G + 
Sbjct: 90  RFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWR 149

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGM-IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           +F +  +AL+  Y K  G  ++ K + +  + +DL + WNS+IS   QN +  ++    +
Sbjct: 150 TFSN--NALMAMYAKL-GRLDDAKSLLVLFEDRDLVT-WNSMISSFSQNERFMEALMFLR 205

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV-VSDFCKDLSVNTALLSMYSKL 281
           LM +EG + D  T  ++L +   L  L  G+ +H  A+   D  ++  V +AL+ MY   
Sbjct: 206 LMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNC 265

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAA 340
             +E  +++FD + D+   +WN MI+ Y QS   +++L L + M   +G  ++  T  + 
Sbjct: 266 GQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSI 325

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V +    + I   + +H  V++ G +    + N+LIDMY    D+  +++IFDS++ + +
Sbjct: 326 VPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDI 385

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKL------------EGVEVDF----VTIINILPA 444
           VSW+++I  YV   +S +AL L  EM+             +  +V F    +T++ +LP 
Sbjct: 386 VSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPG 445

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C ++ AL   K +H Y+++  L S  +V +A+   YAKCGC+ +A  +FD+  I  +++I
Sbjct: 446 CASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI--RNVI 503

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQM-----KQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           TWN +I AY  HG   +  +L+  M     K  +V+P  +TF+ L  +C ++G+V+EG  
Sbjct: 504 TWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLS 563

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKM 618
           +F +MK  +G EP+ +HYA +V+L+GRAG ++EA  LV  MP   D    W  LL AC++
Sbjct: 564 LFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRI 623

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           +   E+ E+ AE L+ ++P+ A +YVLLSNIY++AG W+    +R  ++  G+KK PGCS
Sbjct: 624 YHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCS 683

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           WIE G  VH+F A D SHPQ++ ++  L  L
Sbjct: 684 WIEYGDEVHKFLAGDLSHPQSEKLHDFLETL 714



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 260/522 (49%), Gaps = 41/522 (7%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENE 186
           P    +P V+++ + + +   G++IHA V K G+ SF  V   + LV  Y KC GG  + 
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC-GGLGDA 66

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
             +  R  +  +  WNS+IS   +  + E + + F+LM MEG E  S TL+++  +   L
Sbjct: 67  YKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNL 126

Query: 247 K---SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
           +    L LG+ +H         +  S N AL++MY+KL  L+DAK L     D+D V WN
Sbjct: 127 RKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN 185

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS++ Q+    E+L  L  MV  G + D  T  + + + S +  +  GK++HA  LR 
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRT 245

Query: 364 GSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
               + S V ++L+DMYC C  +   R +FDSV  + +  W++MI GY   +   +AL L
Sbjct: 246 DDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALML 305

Query: 423 FSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           F EM+   G+  +  T+ +I+PA V    +   + +HGY +K GL +   +  A+   Y+
Sbjct: 306 FIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYS 365

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL---------------- 525
           + G I+ +  +FD   ++ +DI++WN++I++Y   G  S    L                
Sbjct: 366 RMGDIKTSKRIFD--SMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGD 423

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE-----PSQEHYAS- 579
           Y   KQ   +P+ IT + +L  C +   + +G       KE + Y       SQ    S 
Sbjct: 424 YNDEKQVPFKPNSITLMTVLPGCASLSALAKG-------KEIHAYAIRNLLASQVTVGSA 476

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +V++  + G ++ AR +   MP + +   W  ++ A  MH +
Sbjct: 477 LVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHGK 517



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 178/358 (49%), Gaps = 17/358 (4%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR--NGSDYQVSVHNSLIDMYCEC 382
           M+ SGF  D F   A + +++ ++ +  GKQ+HA+V +   GS   V++ N+L++MY +C
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             L  A K+FD +  +  VSW+S+I      ++   A++ F  M +EG E    T++++ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 443 PACVNIGALEHV---KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            AC N+   + +   K +HG   + G +  +  N A+   YAK G ++ A  L      +
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLL--VLFE 177

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D++TWNSMIS+++++  + +       M    V+PD +TF  +L AC +  L+  G+ 
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           I      +     +    +++V++    G ++  R LV D        +W  +++    +
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGR-LVFDSVLDRKIGLWNAMIAG---Y 293

Query: 620 SETELAELTAEKLISMEPENA--GNYVLLSNIYAAAGKWNGVAK---MRTFLRDRGLK 672
           +++E  E      I ME       N   +S+I  A  +  G+++   +  ++  RGL+
Sbjct: 294 AQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLE 351


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/589 (36%), Positives = 335/589 (56%), Gaps = 39/589 (6%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCD--GGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           IHAQ++K G  + +     L+EF +      GF     +     +     WN++      
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           +     + +L+ +M   G   DS T   LL+S  + K  + G+ +H   +   F  D+ V
Sbjct: 67  SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYV 126

Query: 271 NTALLSMYSKLASLEDAKM-------------------------------LFDKMSDKDR 299
           +T+L+SMY++   LEDA+                                LFD++  KD 
Sbjct: 127 HTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDV 186

Query: 300 VVWNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
           V WN MIS Y ++G  KE+LEL    M+ +  R D  T +  VS+ +   +IE G+ +H+
Sbjct: 187 VSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHS 246

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            +  +G    + + N+LID+Y +  ++  A ++FD +  K V+SW+++I GY   +   E
Sbjct: 247 WINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKE 306

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY---SMKLGLNSLSSVNTA 475
           AL LF EM   G   + VT+++ILPAC ++GA++  +++H Y    +K  + ++SS+ T+
Sbjct: 307 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTS 366

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG I+ A ++FD   + ++ + TWN+MIS +A HG  +  F ++++M+ + + 
Sbjct: 367 LIDMYAKCGDIDAAQQVFDSS-MSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIE 425

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD ITF+GLL+AC ++G+++ GR IF+ M   Y   P  EHY  M++LLG +G   EA E
Sbjct: 426 PDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEE 485

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           ++  MP +PD  +W  LL ACK+H   EL E  A+KLI +EP N+G+YVLLSNIYAAAG+
Sbjct: 486 MINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGR 545

Query: 656 WNGVAKMRTFLRDRGL-KKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           WN VAK+R  L D+G+ KK PGCS IEI  +VHEF   D+ HPQ   IY
Sbjct: 546 WNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 594



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 255/522 (48%), Gaps = 65/522 (12%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLID---SYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
           ++ IHA+ +I  GLH      S L++      +      +  VF++I  PN L++ T+ +
Sbjct: 4   VRXIHAQ-MIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
             +   +    L +Y  M    + P   T+PF+++SC+       G++IH  V+KLGFD 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 165 FDDVGDALVEFYIKCDGGFENEK-------------------GMIQRKF----------- 194
              V  +L+  Y + +G  E+ +                   G + R +           
Sbjct: 123 DIYVHTSLISMYAQ-NGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 195 --KDLKSRWNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSLEL 251
             KD+ S WN++IS  V+ G  +++ ELFK +M M     D  T++ ++ +  +  S+EL
Sbjct: 182 PGKDVVS-WNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           GR VH       F  +L +  AL+ +YSK   +E A  LFD + +KD + WN +I  Y  
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV---LRNGSDYQ 368
               KE+L L   M+RSG   +  T ++ + + + +  I+ G+ +H  +   L+      
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 369 VSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            S+  SLIDMY +C D++ A+++FD S+  +++ +W++MI G+  H ++  A  +FS M+
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS--YAKCGC 485
           + G+E D +T + +L AC + G L+           LG N   S+     I+      GC
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLD-----------LGRNIFRSMTRGYEITPKLEHYGC 469

Query: 486 -IEMAGE--LFD--EEKIDS----KDIITWNSMISAYAKHGD 518
            I++ G   LF   EE I++     D + W S++ A   HG+
Sbjct: 470 MIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGN 511



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 160/346 (46%), Gaps = 49/346 (14%)

Query: 354 KQMHANVLRNG---SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           + +HA +++ G   ++Y +S       +    +    A  +FD+++   ++ W++M +G+
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGH 64

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN--- 467
                 + AL+L+  M   G+  D  T   +L +C      +  + +HG+ +KLG +   
Sbjct: 65  ALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDI 124

Query: 468 -------SLSSVN---------------------TAIFISYAKCGCIEMAGELFDEEKID 499
                  S+ + N                     TA+   Y   G IE A +LFDE  I 
Sbjct: 125 YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE--IP 182

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQ-MKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
            KD+++WN+MIS Y + G++ +  +L+ + M  ++VRPD  T + +++AC  +  +E GR
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CK 617
            +   + + +G+  + +   ++++L  + G ++ A EL  D  +  D   W  L+     
Sbjct: 243 HVHSWIND-HGFASNLKIVNALIDLYSKFGEVETACELF-DGLWNKDVISWNTLIGGYTH 300

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA-------GKW 656
           M+   E   L  E L S E  N  +  +LS + A A       G+W
Sbjct: 301 MNLYKEALLLFQEMLRSGETPN--DVTMLSILPACAHLGAIDIGRW 344


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/715 (31%), Positives = 375/715 (52%), Gaps = 71/715 (9%)

Query: 54  RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           R +++   H N+I  + +++ YA LG LS + ++F  + + +   + T++    +  +Y 
Sbjct: 60  RLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYL 119

Query: 114 KTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD--VGD 170
            +L  +  M      +P   T    ++SC  L       ++ A V K  FDS DD  V  
Sbjct: 120 VSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQK--FDSQDDSEVAA 177

Query: 171 ALVEFYIKCDGGFE---------NEKGMIQRK------------------FKDLKSR--- 200
           ALV+ +++C G  +          E  M  R                   F  +  R   
Sbjct: 178 ALVDMFVRC-GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVV 236

Query: 201 -WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN ++S   Q+G+  ++ ++   M+ +G   DS T  + L +   L SL  G+ +H   
Sbjct: 237 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 296

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + +    D  V +AL+ +Y+K    ++AK +F+ + D++ V W ++IS + Q G   ES+
Sbjct: 297 IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESV 356

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL   M       D F     +S   +  ++  G+Q+H+  L++G    V V NSLI MY
Sbjct: 357 ELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMY 416

Query: 380 CECEDLNCA-------------------------------RKIFDSVKTKTVVSWSSMIK 408
            +C++L  A                               R+ FD +  K V++W++M+ 
Sbjct: 417 AKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLG 476

Query: 409 GYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            Y+ H    + LR++  M   E V  D+VT + +   C ++GA +    + G ++K+GL 
Sbjct: 477 AYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLI 536

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
             +SV  A+   Y+KCG I  A ++FD   ++ KDI++WN+MI+ Y++HG   Q  +++ 
Sbjct: 537 IDTSVANAVITMYSKCGRILEARKVFDF--LNVKDIVSWNAMITGYSQHGMGKQAIEIFD 594

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            + +   +PD I+++ +L+ C ++GLV+EG+  F  MK ++   P  EH++ MV+LLGRA
Sbjct: 595 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRA 654

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           GH+ EA++L+ DMP KP A VWG LLSACK+H   ELAEL A+ +  ++  ++G+Y+L++
Sbjct: 655 GHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMA 714

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            IYA AGK +  A++R  +RD+G+KK PG SW+E+   VH F A D SHPQ  AI
Sbjct: 715 KIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAI 769



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 187/399 (46%), Gaps = 36/399 (9%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA+ +I +  H +  ++S L++ YA  G    ++ VFNS+   N++ +  ++    +
Sbjct: 290 KQLHAQ-VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQ 348

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           +G + +++ ++ QM  + M   +     +I  C   +D   G ++H+  +K G      V
Sbjct: 349 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 169 GDALVEFYIKCDG--------GFENEKGMIQ-----------------RKFKDLKSR--- 200
            ++L+  Y KCD          F NEK ++                  R+F D  S    
Sbjct: 409 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 468

Query: 201 --WNSLISLAVQNGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
             WN+++   +Q+G  E    ++K+M   E    D  T + L +   +L + +LG  +  
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIG 528

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
             V      D SV  A+++MYSK   + +A+ +FD ++ KD V WN MI+ Y Q G  K+
Sbjct: 529 RTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 588

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN--SL 375
           ++E+   +++ G + D  + +A +S  S    ++ GK  + ++++   +    + +   +
Sbjct: 589 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGK-FYFDMMKRAHNISPGLEHFSCM 647

Query: 376 IDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTH 413
           +D+      L  A+ + D +  K T   W +++     H
Sbjct: 648 VDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIH 686



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 68/323 (21%)

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK-------------------------- 390
           H  ++  G    V + N+L+  Y  C  L+ AR+                          
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 391 ------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE-VDFVTIINILP 443
                 +F  +  + V SW++++ GY    Q L +L  F  M   G    +  T+   + 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE-------- 495
           +C  +G       L     K      S V  A+   + +CG +++A  LF          
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 496 ------------------EKIDS---KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
                             E  DS   +D+++WN M+SA ++ G   +   +   M+   V
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDE 592
           R D  T+   LTAC     +  G+ +  ++  +    P  + Y  +++V L  ++G   E
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFKE 323

Query: 593 ARELVKDMPFKPDARVWGPLLSA 615
           A+ +   +  + +   W  L+S 
Sbjct: 324 AKGVFNSLHDRNNV-AWTVLISG 345


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/667 (29%), Positives = 367/667 (55%), Gaps = 4/667 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA  +  +G      + + L+  Y+ +     +++VF+ + S + + + +++  L++
Sbjct: 233 EQLHA-LVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQ 291

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  +  L ++ +M    + P   T   ++ +C+       GE++H+ V+K G  S   V
Sbjct: 292 QGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIV 351

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL++ Y+ C       +  +  + +++   WN ++    +     +SF +F+ M+++G
Sbjct: 352 EGALLDLYVNCSDIKTAHEMFLTAQTENV-VLWNVMLVAFGKLDNLSESFRIFRQMQIKG 410

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  T  ++LR+   + +L+LG  +H   + + F  ++ V + L+ MY+K   L+ A 
Sbjct: 411 LIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAH 470

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           ++   +++ D V W  +IS Y Q     E+L+    M+  G ++D     +A+S+ + ++
Sbjct: 471 VILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQ 530

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  G+Q+HA    +G    +S+ N+L+ +Y  C  +  A   F+ +  K  +SW+ +I 
Sbjct: 531 ALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLIS 590

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G+       +AL++F++M    +E  F T  + + A  NI  ++  K +H   +K G +S
Sbjct: 591 GFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDS 650

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V+ A+   YAKCG IE A   F E  +  K+ ++WN+MI+ Y++HG  ++   L+ +
Sbjct: 651 DIEVSNALITFYAKCGSIEDARREFCE--MPEKNDVSWNAMITGYSQHGYGNEAVNLFEK 708

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MKQ    P+ +TF+G+L+AC + GLV +G   F+ M + +G  P   HYA +V+L+ RAG
Sbjct: 709 MKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAG 768

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +  AR+ +++MP +PDA +W  LLSAC +H   E+ E  A+ L+ +EPE++  YVLLSN
Sbjct: 769 FLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSN 828

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YA +GKW+   + R  +R+RG+KK PG SWIE+   VH F+  D+ HP AD IY  L  
Sbjct: 829 MYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAE 888

Query: 709 LELEIME 715
           L  +  E
Sbjct: 889 LNKKAAE 895



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 155/594 (26%), Positives = 291/594 (48%), Gaps = 34/594 (5%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF-----N 89
           LL+LC N   L   +++H + + L G     +L + L+D Y  LG L    +VF      
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKL-GFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNR 74

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC-LLDFI 148
           S+ S + ++ G + K +S      + L ++  M  +++ P E ++  V+R+CS   +   
Sbjct: 75  SVRSWDKIISGFMEKKMSN-----RVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIR 129

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR----W 201
             E+IHA+++  G      + + L+  Y K         G+I   ++ F +L ++    W
Sbjct: 130 YAEQIHARIICHGLLCSPIISNPLIGLYAK--------NGLIISARKVFDNLCTKDSVSW 181

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
            ++IS   QNG  E++  LF  M   G         ++L    ++K  ++G  +H +   
Sbjct: 182 VAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFK 241

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
                +  V  AL+++YS++ +   A+ +F KM  KD V +N +IS   Q GF   +LEL
Sbjct: 242 YGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALEL 301

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M R   + D  T  + +S+ ++   +  G+Q+H+ V++ G    + V  +L+D+Y  
Sbjct: 302 FTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVN 361

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C D+  A ++F + +T+ VV W+ M+  +   D   E+ R+F +M+++G+  +  T  +I
Sbjct: 362 CSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSI 421

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L  C ++GAL+  + +H   +K G      V + +   YAK G ++ A  +     +   
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVIL--RTLTED 479

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+++W ++IS YA+H  +++  K + +M    ++ D I F   ++AC     + +GR I 
Sbjct: 480 DVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIH 539

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            +   S GY        ++V+L  R G + EA    + +  K D+  W  L+S 
Sbjct: 540 AQSYVS-GYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISG 591



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 252/493 (51%), Gaps = 14/493 (2%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY +++  C      +  +K+H +++KLGF +   + + LV+ Y        +  G++ +
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYF----ALGDLDGVV-K 66

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK- 247
            F+D+ +R    W+ +IS  ++   S +  +LF  M  E       +  ++LR+    + 
Sbjct: 67  VFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRI 126

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            +     +H   +         ++  L+ +Y+K   +  A+ +FD +  KD V W  MIS
Sbjct: 127 GIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMIS 186

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            + Q+G+ +E++ L   M  +G     +   + +S  + +K  + G+Q+HA V + GS  
Sbjct: 187 GFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSL 246

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           +  V N+L+ +Y    +   A K+F  +++K  VS++S+I G      S  AL LF++MK
Sbjct: 247 ETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMK 306

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            + ++ D VT+ ++L AC + GAL   + LH Y +K G++S   V  A+   Y  C  I+
Sbjct: 307 RDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIK 366

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A E+F   +  +++++ WN M+ A+ K  + S+ F+++ QM+   + P+  T+  +L  
Sbjct: 367 TAHEMFLTAQ--TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRT 424

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C + G ++ G  I  ++ ++ G++ +    + ++++  + G +D A  +++ +  + D  
Sbjct: 425 CTSVGALDLGEQIHTQVIKT-GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVV 482

Query: 608 VWGPLLSACKMHS 620
            W  L+S    H+
Sbjct: 483 SWTALISGYAQHN 495



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+  G+  +  T I +L  C+N G+L   K LHG  +KLG  + S +   +   Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           ++   ++F  E + ++ + +W+ +IS + +    ++   L++ M + +V P  I+F  +L
Sbjct: 61  LDGVVKVF--EDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL 118

Query: 546 TAC 548
            AC
Sbjct: 119 RAC 121


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/644 (33%), Positives = 364/644 (56%), Gaps = 10/644 (1%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM- 122
           ++ + + LI  Y   G +  + +VF+ +   N + + +++    + G +E++  ++K + 
Sbjct: 230 DVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLL 289

Query: 123 -ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
              + + P   T   VI  C+   +   G   H   +KLG      V  +L++ Y KC G
Sbjct: 290 NGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKC-G 348

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLL 240
                + +     K++ S WNS+I    ++     +FEL + M+ME   + +  TL+N+L
Sbjct: 349 YLCEARVLFDTNEKNVIS-WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL 407

Query: 241 R-STVELKSLELGRIVHCVAVVSDFCK-DLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
                E++ L+L  I H  A+   F + D  V  A ++ Y+K  SL  A+ +F  M  K 
Sbjct: 408 PVCEEEIQFLKLKEI-HGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKM 466

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN +I  + Q+GFP+++L+L + M  SG   DLFT  + +S+ + +K++  GK++H 
Sbjct: 467 VSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHG 526

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
           ++LRNG +    +  SL+ +Y +C  +  A+  FD+++ K +V W++MI G+  ++   +
Sbjct: 527 SMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFD 586

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL +F +M    +  D ++II  L AC  + AL   K LH +++K  L   S V  ++  
Sbjct: 587 ALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLID 646

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAKCGC+E +  +FD  ++  K  +TWN +I+ Y  HG   +  +L+  M+ +  RPD 
Sbjct: 647 MYAKCGCMEQSQNIFD--RVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDS 704

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +TF+ LLTAC +AGLV EG     +M+  +G +P  EHYA +V++LGRAG ++EA ELV 
Sbjct: 705 VTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVN 764

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           ++P KPD+R+W  LLS+C+ + + ++ E  A KL+ + P+ A NYVL+SN YA  GKW+ 
Sbjct: 765 ELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDE 824

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           V KMR  +++ GL+K  GCSWIEIG  V  F   D+S  Q+  I
Sbjct: 825 VRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKI 868



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 157/598 (26%), Positives = 288/598 (48%), Gaps = 18/598 (3%)

Query: 38  LLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL LC   +N +  ++IH           +++L + L+  Y+       S  VFN+    
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           N  L+  +L    +   +   + V+ +M +L    P   T P VI++C  + D   GE +
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H   +K    S   VG+AL+  Y K  G  E+   +  +  +     WNS++   ++NG 
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKF-GFVESAVKVFDKMPQRNLVSWNSVMYACLENGV 277

Query: 214 SEKSFELFK--LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            E+S+ LFK  L   EG   D  T++ ++        + LG + H +A+    C +L VN
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN 337

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGF 330
           ++LL MYSK   L +A++LFD  ++K+ + WN MI  Y +    + + ELL  M +    
Sbjct: 338 SSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG---SDYQVSVHNSLIDMYCECEDLNC 387
           + +  T +  +            K++H   LR+G   SD  V+  N+ +  Y +C  L+ 
Sbjct: 397 KVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVA--NAFVAGYAKCGSLHY 454

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  +F  +++K V SW+++I G+V +    +AL L+  M+  G+E D  TI ++L AC  
Sbjct: 455 AEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACAR 514

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + +L   K +HG  ++ G      +  ++   Y +CG I +A   FD   ++ K+++ WN
Sbjct: 515 LKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDN--MEEKNLVCWN 572

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +MI+ ++++        ++ QM  S + PD I+ +G L AC     +  G+ +     +S
Sbjct: 573 TMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKS 632

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +  E S     S++++  + G M++++ +   +  K +   W  L++   +H     A
Sbjct: 633 HLTEHSFV-TCSLIDMYAKCGCMEQSQNIFDRVHLKGEV-TWNVLITGYGIHGHGRKA 688



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 127/563 (22%), Positives = 247/563 (43%), Gaps = 60/563 (10%)

Query: 14  GHVKFLRFPANQTRPHMTATHSFSLLNLCENPQH---LQQIHARYIILHGLHQNLILSSN 70
           G  + LR    + +  +      ++L +CE       L++IH  Y + HG  Q+  L +N
Sbjct: 382 GAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHG-YALRHGFIQSDELVAN 440

Query: 71  -LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
             +  YA  G L  ++ VF  + S     +  ++    + G   K L +Y  M    + P
Sbjct: 441 AFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEP 500

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T   ++ +C+ L     G++IH  +++ GF+  + +  +LV  Y++C       K +
Sbjct: 501 DLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCG------KIL 554

Query: 190 IQRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           + + F D         WN++I+   QN     + ++F  M       D  ++I  L +  
Sbjct: 555 LAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACS 614

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           ++ +L LG+ +HC AV S   +   V  +L+ MY+K   +E ++ +FD++  K  V WN+
Sbjct: 615 QVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNV 674

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS----TMKNIEWGKQMHANV 360
           +I+ Y   G  ++++EL   M  +GFR D  T IA +++ +      + +E+  QM +  
Sbjct: 675 LITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLF 734

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI---KGYVTHDQS 416
              G   ++  +  ++DM      LN A ++ + +  K     WSS++   + Y   D  
Sbjct: 735 ---GIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIG 791

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            +      E+  +  E ++V I N       +G  + V+ +     ++GL          
Sbjct: 792 EKVANKLLELGPDKAE-NYVLISNFY---ARLGKWDEVRKMRQRMKEIGLQ--------- 838

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
               A C  IE+ G++       S+ ++   S++ +      W    +L  ++ +   +P
Sbjct: 839 --KDAGCSWIEIGGKV-------SRFLVGDESLLQSMKIQQTW---IELEKKINKIGYKP 886

Query: 537 DLITFLGLLTACVNAGLVEEGRI 559
           D        T+CV   L E+ +I
Sbjct: 887 D--------TSCVLHELEEDEKI 901


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/570 (34%), Positives = 334/570 (58%), Gaps = 13/570 (2%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H++++ LG      +   L+  Y  C   + +       + K++   WNSLI+   +N  
Sbjct: 46  HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNV-FLWNSLINGYAKNRL 104

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             ++F+LF  M       D  TL  L + + EL +L  G+ +H  ++   F  D  V  +
Sbjct: 105 YNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANS 164

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG---FPKESLELLMCMVRSGF 330
           ++SMY K  + E+++ +FD+M+ ++   WN++I+ Y  SG   F +E+ E +  M     
Sbjct: 165 IMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEV 224

Query: 331 RADLFTAIAAVSSISTMKNIEW--GKQMHANVLRN----GSDYQVSVHNSLIDMYCECED 384
           R D +T I+++  +      +W  G+++H  +++N    G D  V +   LIDMY     
Sbjct: 225 RPDAYT-ISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK 283

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK-LEGVEVDFVTIINILP 443
           +   R++FD +K + V SW++MI GYV +  S EAL LF +M+ ++G+E + V+++++LP
Sbjct: 284 VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLP 343

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC +   L   + +HG++++  LN+  S+  A+   Y+KCG ++ A  +F+++ +  KD 
Sbjct: 344 ACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSL-CKDA 402

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           I+W+SMIS Y  HG   +   LY +M Q+ +RPD+IT +G+L+AC  +GLV EG  I+  
Sbjct: 403 ISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSS 462

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           +   YG EP+ E +A +V++LGRAG +D A + +K MP +P   VWG L+S   +H + E
Sbjct: 463 VINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLE 522

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           + EL    LI +EPEN  NYV +SN+YA++ +W+ VA++R  ++D+ L+K PGCSWI I 
Sbjct: 523 MQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISIN 582

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEI 713
              H F+ AD++HP A +IY +L  L L +
Sbjct: 583 NKTHCFYVADKAHPSATSIYNMLDDLLLTM 612



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/526 (26%), Positives = 252/526 (47%), Gaps = 17/526 (3%)

Query: 4   LLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQ 63
           ++P  C+L         F  + +   + + H FS+ +  ++ +  +Q H+R + L GL Q
Sbjct: 1   MIPKTCTLIPSRYYASAFEFDPSLALLQSLH-FSVTH--KSLKLTRQSHSRILSL-GLSQ 56

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N +L++ LI +YA       S+ VF+S+   N  L+ +++   +K   Y +   ++ QM 
Sbjct: 57  NSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMC 116

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P + T   + +  S L    SG+ IH + +++GF S   V ++++  Y KC G F
Sbjct: 117 SSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKC-GNF 175

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGK---SEKSFELFKLMRMEGAEFDSGTLINLL 240
           E  + +           WN LI+    +G     E+++E  K M+M+    D+ T+ +LL
Sbjct: 176 EESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLL 235

Query: 241 R-STVELKSLELGRIVHCVAVVSDFC----KDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
                +    + GR +HC  V ++       D+ +   L+ MYS+   +   + +FD+M 
Sbjct: 236 PLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMK 295

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            ++   W  MI+ Y ++G   E+L L   M V  G   +  + ++ + + S+   +  G+
Sbjct: 296 CRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGR 355

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF-DSVKTKTVVSWSSMIKGYVTH 413
           Q+H   +R   + +VS+ N+LIDMY +C  L+ AR++F D    K  +SWSSMI GY  H
Sbjct: 356 QIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLH 415

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSV 472
            +  EA+ L+ +M   G+  D +T + IL AC   G + E +          G+     +
Sbjct: 416 GKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEI 475

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              I     + G ++ A +      ++    + W +++S    HGD
Sbjct: 476 FACIVDMLGRAGQLDPALDFIKAMPVEPGPSV-WGALVSCSIIHGD 520



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 224/459 (48%), Gaps = 19/459 (4%)

Query: 230 EFD-SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           EFD S  L+  L  +V  KSL+L R  H   +     ++  + T L+  Y+       ++
Sbjct: 19  EFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSR 78

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST-M 347
           ++FD +  K+  +WN +I+ Y ++    E+ +L   M  S    D FT ++ +S +S+ +
Sbjct: 79  LVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFT-LSTLSKVSSEL 137

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +  GK +H   +R G      V NS++ MYC+C +   +RK+FD +  +   SW+ +I
Sbjct: 138 GALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLI 197

Query: 408 KGYVTHDQ---SLEALRLFSEMKLEGVEVDFVTIINILPAC-VNIGALEHVKYLHGYSMK 463
            GY          E      +M+++ V  D  TI ++LP C  + G  ++ + LH Y +K
Sbjct: 198 AGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVK 257

Query: 464 ----LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
               LGL+S   +   +   Y++   + +   +FD  K   +++ +W +MI+ Y ++GD 
Sbjct: 258 NELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKC--RNVFSWTAMINGYVENGDS 315

Query: 520 SQCFKLYTQMKQSD-VRPDLITFLGLLTACVN-AGLVEEGRIIFKEMKESYGYEPSQEHY 577
            +   L+  M+  D + P+ ++ + +L AC + +GL+   +I    +++    E S  + 
Sbjct: 316 DEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCN- 374

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI--SM 635
            +++++  + G +D AR + +D     DA  W  ++S   +H + + A L  +K++   +
Sbjct: 375 -ALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGI 433

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
            P+      +LS    +     G+    + + D G++ T
Sbjct: 434 RPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPT 472


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/669 (31%), Positives = 371/669 (55%), Gaps = 7/669 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYGTILKNLS 107
           +QIH+ YI+ + L+ +  L + LID+Y   G  + ++ +F  +    N + +  ++    
Sbjct: 159 KQIHS-YIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFG 217

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVKLGFDSFD 166
           + G +E +L  Y     +++     ++   + +C    +F+S G+++H   +K+GF+   
Sbjct: 218 ENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACG-QGEFVSFGKQVHCDAIKVGFEDDP 276

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V  +L+  Y KC      EK   +   K+++  WN+LIS  V NG +  +  ++K M++
Sbjct: 277 YVHTSLLTMYGKCQMIESAEKVFNEVPDKEIE-LWNALISAYVGNGYAYDALRIYKQMKL 335

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
                DS T++N+L S+      +LGR++H   V       +++ +ALL+MYSK      
Sbjct: 336 CTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNY 395

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +F  M ++D V W  +IS + Q+   KE+L+    M     + D     + +S+ + 
Sbjct: 396 ANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTG 455

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           ++ ++ G  +H  V+++G    V V +SL+DMY +      A  IF  +  K +V+W+S+
Sbjct: 456 LEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSI 515

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  Y  ++    ++ LFS++    +  D V+  ++L A  ++ AL   K +HGY ++L +
Sbjct: 516 ISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWI 575

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V   +   Y KCG ++ A  +F  E+I  K+++ WNSMI  Y  HG+ S+  +L+
Sbjct: 576 PFDLQVENTLIDMYIKCGLLKYAQHIF--ERISEKNLVAWNSMIGGYGSHGECSKAIELF 633

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M+ S ++PD +TFL LL++C ++GL+EEG  +F+ MK  +G EP  EHY ++V+L GR
Sbjct: 634 DEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGR 693

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG + +A   VK+MP +PD  +W  LL +CK+H   EL E+ A KL++MEP    NYV L
Sbjct: 694 AGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQL 753

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            N+Y  A  W+  A +R  ++++GLKKTPGCSWIE+   V  F++ D S P    IY  L
Sbjct: 754 LNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKVDVFYSGDCSSPITTEIYDTL 813

Query: 707 GILELEIME 715
             L+  +++
Sbjct: 814 SSLKRNMIK 822



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 176/682 (25%), Positives = 323/682 (47%), Gaps = 89/682 (13%)

Query: 28  PHMTATHSF-SLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           P  T   ++ SLL  C    N Q+ + IH+  II  GLH +  ++S+LI+ Y   G  + 
Sbjct: 48  PVYTTRFTYPSLLKACASLSNLQYGKTIHSS-IITTGLHSDQYITSSLINIYVKCGTFTD 106

Query: 84  SQQVFN-----SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           + +VF+      ++  +  ++ +I+    +FG+ E+ ++ + +M                
Sbjct: 107 AVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSG------------ 154

Query: 139 RSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
                   +  G++IH+ +V+  L FD F +   AL++ Y KC  G   E   + +K KD
Sbjct: 155 --------YKEGKQIHSYIVRNMLNFDPFLET--ALIDTYFKC--GRPTEARYLFKKLKD 202

Query: 197 LKS--RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
             +   WN +I    +NG  E S E + L + E  +  S +    L +  + + +  G+ 
Sbjct: 203 RSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQ 262

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           VHC A+   F  D  V+T+LL+MY K   +E A+ +F+++ DK+  +WN +ISAY  +G+
Sbjct: 263 VHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGY 322

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             ++L +   M      +D FT +  ++S S     + G+ +H  +++      +++ ++
Sbjct: 323 AYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSA 382

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           L+ MY +  D N A  IF ++K + VV+W S+I G+  + +  EAL  F  M+ + V+ D
Sbjct: 383 LLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPD 442

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
              + +I+ AC  +  ++    +HG+ +K GL     V +++   Y+K G  E AG +F 
Sbjct: 443 SDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFS 502

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC------ 548
           +  +  K+++ WNS+IS Y ++        L++Q+ ++D+ PD ++F  +L A       
Sbjct: 503 DMPL--KNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAAL 560

Query: 549 -----------------------------VNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
                                        +  GL++  + IF+ + E      +   + S
Sbjct: 561 LKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEK-----NLVAWNS 615

Query: 580 MVNLLGRAGHMDEARELVKDM---PFKPDARVWGPLLSACKMHSETE----LAELTAEKL 632
           M+   G  G   +A EL  +M     KPD   +  LLS+C      E    L E+   K 
Sbjct: 616 MIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKF 675

Query: 633 ISMEPENAGNYVLLSNIYAAAG 654
             +EP    +YV + ++Y  AG
Sbjct: 676 -GIEPR-MEHYVNIVDLYGRAG 695



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 246/518 (47%), Gaps = 34/518 (6%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +K+L +  +Y + L +Y +     +Y    TYP ++++C+ L +   G+ IH+ ++  G 
Sbjct: 28  IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK-----DLKSRWNSLISLAVQNGKSEKS 217
            S   +  +L+  Y+KC G F +   +  +  K     D  + WNS+I    + G+ E+ 
Sbjct: 85  HSDQYITSSLINIYVKC-GTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEG 143

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
              F  M+  G                     + G+ +H   V +    D  + TAL+  
Sbjct: 144 MVQFGRMQSSG--------------------YKEGKQIHSYIVRNMLNFDPFLETALIDT 183

Query: 278 YSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           Y K     +A+ LF K+ D+  +V WN+MI  + ++G  + SLE  +       +    +
Sbjct: 184 YFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSS 243

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               +S+    + + +GKQ+H + ++ G +    VH SL+ MY +C+ +  A K+F+ V 
Sbjct: 244 FTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVP 303

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K +  W+++I  YV +  + +ALR++ +MKL  V  D  TI+N+L +    G  +  + 
Sbjct: 304 DKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRL 363

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +H   +K  L S  ++ +A+   Y+K G    A  +F   K   +D++ W S+IS + ++
Sbjct: 364 IHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMK--ERDVVAWGSVISGFCQN 421

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
             + +    +  M+   V+PD      +++AC     V+ G  I   + +S G +     
Sbjct: 422 RKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS-GLQLDVFV 480

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            +S++++  + G  + A  +  DMP K +   W  ++S
Sbjct: 481 ASSLLDMYSKFGFPERAGNIFSDMPLK-NLVAWNSIIS 517



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 139/305 (45%), Gaps = 28/305 (9%)

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           ++ +E L    +S      FT  + + + +++ N+++GK +H++++  G      + +SL
Sbjct: 35  RQYIEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSL 94

Query: 376 IDMYCECEDLNCARKIFD-----SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           I++Y +C     A K+FD      V    V  W+S+I GY    Q  E +  F  M+  G
Sbjct: 95  INIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSG 154

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
                                +  K +H Y ++  LN    + TA+  +Y KCG    A 
Sbjct: 155 --------------------YKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEAR 194

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            LF + K D  +I+ WN MI  + ++G W    + Y   K  +V+    +F   L+AC  
Sbjct: 195 YLFKKLK-DRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQ 253

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
              V  G+ +  +  +  G+E     + S++ + G+   ++ A ++  ++P K +  +W 
Sbjct: 254 GEFVSFGKQVHCDAIK-VGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDK-EIELWN 311

Query: 611 PLLSA 615
            L+SA
Sbjct: 312 ALISA 316


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/664 (32%), Positives = 367/664 (55%), Gaps = 11/664 (1%)

Query: 28  PHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           P     H+F   +LC+N   L ++HA Y+++ GL ++L  S+ L+  Y + G L L++ V
Sbjct: 2   PLPPILHNF-FYSLCDNINTLMEMHA-YLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLV 59

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F++I  P+ L +  I++      E+   +  Y +M +         +  V+++CS   +F
Sbjct: 60  FDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNF 119

Query: 148 ISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
             G K+H Q+VK G  DSF  V   LV+ Y KC G  E  + +           W+S+I+
Sbjct: 120 DEGRKVHCQIVKFGNPDSF--VFTGLVDMYAKC-GEIECSRSVFDENLDRNVFSWSSMIA 176

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             VQN  ++    LF  MR E  E +  TL  L+ +  +L +L  G+ +H   +      
Sbjct: 177 GYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIEL 236

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
              + TALL +Y+K   + DA+ +FD++   D V W  MI  Y Q+G P+E+L+L +   
Sbjct: 237 GSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKE 296

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           +     +  T  +  SS S + N+  G+ +H   ++ GS   + V NSL+D Y +C+   
Sbjct: 297 QVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPI-VTNSLVDFYAKCQMNR 355

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            AR +F+++  + VV+W+S+I  +  +  + EAL LF +M++  V  D VT++++L AC 
Sbjct: 356 DARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACA 415

Query: 447 NIGALEHVKYLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
           ++ AL+     H Y++K GL +S   V TA+   YAKCG  E A  +FD   +D K  +T
Sbjct: 416 SLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFD--GMDQKSTVT 473

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W++MIS Y   G+      ++  M +++++P+   F  +L+AC + G++ EG  +F  + 
Sbjct: 474 WSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMIC 533

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           + Y   PS +HY  MV+LL RAG + EA + ++ MP +PD  ++G  L  C +HS  +L 
Sbjct: 534 QDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLG 593

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           EL  ++++ + P +A  YVL+ N+YA+  +W+ V ++R  ++ RGL KTPGCS +E+  +
Sbjct: 594 ELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLMEM-DV 652

Query: 686 VHEF 689
            H+F
Sbjct: 653 DHDF 656


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/553 (36%), Positives = 324/553 (58%), Gaps = 39/553 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++     +     + E++  M   G   +S +   LL+S  + K+ E GR +H   +
Sbjct: 32  WNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVL 91

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFD---------------------------- 292
                 D  V+T+L+SMY++   LEDA+ +FD                            
Sbjct: 92  KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARK 151

Query: 293 ---KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
              +++++D V WN MI+ Y ++G  +E+LEL   M+R+  R D  T ++ VS+ +   +
Sbjct: 152 VFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGS 211

Query: 350 IEWGKQMHANVLR----NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           IE G+Q+H+ V      +G    + + N+LID+Y +C D+  A  +F+ +  K VVSW++
Sbjct: 212 IELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNT 271

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL- 464
           +I GY   +   EAL LF EM   G   + VT++++LPAC ++GA++  +++H Y  K  
Sbjct: 272 LIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKL 331

Query: 465 -GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G+ + +S+ T++   YAKCG IE A ++F+   +  + + +WN+MI  +A HG  +  F
Sbjct: 332 KGVTNETSLRTSLIDMYAKCGDIEAAHQVFN--SMLYRSLSSWNAMIFGFAMHGRANAAF 389

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+++M+ + V PD ITF+GLL+AC ++GL++ GR IFK M + Y   P  EHY  M++L
Sbjct: 390 DLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDL 449

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LG +G   EA E++  MP +PD  +W  LL ACK H   ELAE  A+KLI +EPEN+G+Y
Sbjct: 450 LGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSY 509

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLLSNIYA AG+W  VA++R  L  +G+KK PGCS IE+  +VHEF   D+ HP+   IY
Sbjct: 510 VLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIY 569

Query: 704 TILGILELEIMEG 716
            +L  +++++ E 
Sbjct: 570 HMLEEMDVQLEEA 582



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 238/486 (48%), Gaps = 60/486 (12%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  VF +I  PN L++ T+L+  +   +    L +Y +M      P   ++PF+++S
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---------- 190
           C+    F  G +IHAQV+KLG      V  +L+  Y + +GG E+ + +           
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYAR-NGGLEDARKVFDASSHRDVVS 132

Query: 191 -----------------QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
                            ++ F ++  R    WN++I+  V+NG+ E++ ELFK M     
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHC----VAVVSDFCKDLSVNTALLSMYSKLASLE 285
             D GTL++++ +  +  S+ELGR VH           F   L +  AL+ +YSK   +E
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  LF+ +S KD V WN +I  Y  +   KE+L L   M+RSG   +  T ++ + + +
Sbjct: 253 TAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312

Query: 346 TMKNIEWGKQMHANVLR--NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +  I+ G+ +H  + +   G   + S+  SLIDMY +C D+  A ++F+S+  +++ SW
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSW 372

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++MI G+  H ++  A  LFS M+   VE D +T + +L AC + G L+           
Sbjct: 373 NAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLD----------- 421

Query: 464 LGLNSLSSVNTAIFIS--YAKCGC-IEMAGE--LFD--EEKIDS----KDIITWNSMISA 512
           LG     S+     ++      GC I++ G   LF   EE I +     D + W S++ A
Sbjct: 422 LGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKA 481

Query: 513 YAKHGD 518
             KHG+
Sbjct: 482 CKKHGN 487



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 175/372 (47%), Gaps = 39/372 (10%)

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F+ + + + ++WN M+  +  S  P  +LE+ + MV  G   + ++    + S +  K 
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE---------------------CE----- 383
            E G+Q+HA VL+ G      VH SLI MY                       C      
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 384 -----DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
                D   ARK+FD +  + VVSW++MI GYV + +  EAL LF EM    V  D  T+
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 439 INILPACVNIGALEHVKYLHGYSMKL----GLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
           ++++ AC   G++E  + +H +        G +S   +  A+   Y+KCG +E A  LF 
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLF- 258

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            E +  KD+++WN++I  Y     + +   L+ +M +S   P+ +T L +L AC + G +
Sbjct: 259 -EGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAI 317

Query: 555 EEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           + GR I   + K+  G         S++++  + G ++ A ++   M ++  +  W  ++
Sbjct: 318 DIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSS-WNAMI 376

Query: 614 SACKMHSETELA 625
               MH     A
Sbjct: 377 FGFAMHGRANAA 388



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 150/311 (48%), Gaps = 9/311 (2%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +     H++++  + LI  YA+ G    +++VF+ IT  + + +  ++    + G Y
Sbjct: 118 ARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRY 177

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL----GFDSFDDV 168
           E+ L ++K+M   ++ P E T   V+ +C+       G ++H+ V       GF S   +
Sbjct: 178 EEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKI 237

Query: 169 GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            +AL++ Y KC G  E   G+ +    KD+ S WN+LI         +++  LF+ M   
Sbjct: 238 VNALIDLYSKC-GDVETAFGLFEGLSCKDVVS-WNTLIGGYTHTNLYKEALLLFQEMLRS 295

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCV--AVVSDFCKDLSVNTALLSMYSKLASLE 285
           G   +  TL+++L +   L ++++GR +H      +     + S+ T+L+ MY+K   +E
Sbjct: 296 GECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIE 355

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  +F+ M  +    WN MI  +   G    + +L   M  +    D  T +  +S+ S
Sbjct: 356 AAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACS 415

Query: 346 TMKNIEWGKQM 356
               ++ G+Q+
Sbjct: 416 HSGLLDLGRQI 426



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 150/317 (47%), Gaps = 49/317 (15%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           + L  A  +F++++   ++ W++M++G+ +    + AL ++  M   G   +  +   +L
Sbjct: 12  DGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLL 71

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE------- 495
            +C    A E  + +H   +KLG      V+T++   YA+ G +E A ++FD        
Sbjct: 72  KSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVV 131

Query: 496 ----------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
                                 ++I  +D+++WN+MI+ Y ++G + +  +L+ +M +++
Sbjct: 132 SCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN 191

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRII---FKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           VRPD  T + +++AC  +G +E GR +     +  + +G+  S +   ++++L  + G +
Sbjct: 192 VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDV 251

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAE----LTAEKLISMEPENAGNYVLL 646
           + A  L + +  K D   W  L+     ++ T L +    L  E L S E  N  +  LL
Sbjct: 252 ETAFGLFEGLSCK-DVVSWNTLIGG---YTHTNLYKEALLLFQEMLRSGECPN--DVTLL 305

Query: 647 SNIYAAA-------GKW 656
           S + A A       G+W
Sbjct: 306 SVLPACAHLGAIDIGRW 322


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/644 (32%), Positives = 349/644 (54%), Gaps = 5/644 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+HA+ + L GL    + SS+L+++Y + G + ++++        + + +  +L   ++ 
Sbjct: 182 QVHAQAVKLEGLFDPYV-SSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARD 240

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G+Y K +LV+ ++       ++ T P V++ C  L    SG+ +H  V+K G ++   + 
Sbjct: 241 GDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN 300

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           + L+E Y KC    E+   +  R  +      + +IS   ++  + ++F++F  M   G 
Sbjct: 301 NCLIEMYSKCLSA-EDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGV 359

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + +  T + L         + L R +H   V S F +   V  A++ MY K  +++DA +
Sbjct: 360 KPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAIL 419

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            FD M   D   WN ++S +Y     +  L +   ++  G  A+ +T +  +   +++ +
Sbjct: 420 AFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMD 479

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           + +G Q+HA VL++G      V   L+DMY +      AR +FD +K + V SW+ ++  
Sbjct: 480 LRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMST 539

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y   D+  +A+  F  M  E    +  T+   L  C ++  L     LH Y++K G NS 
Sbjct: 540 YAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNS- 598

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           S V++A+   Y KCG +  A  LFDE   D+ D++ WN++I  YA+HG   +  + + +M
Sbjct: 599 SVVSSALVDMYVKCGNLADAEMLFDES--DTHDLVEWNTIICGYAQHGHGYKALEAFQEM 656

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
                 PD ITF+G+L+AC +AGL++EGR  FK +   YG  P+ EHYA MV++L +AG 
Sbjct: 657 IDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGK 716

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + EA  L+ +MP  PDA +W  +L AC+MH   E+AE  AEKL   +P++  + +LLSNI
Sbjct: 717 LAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNI 776

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
           YA   +WN VAK+R+ L DRG+KK PGCSWIEI   +H F + D
Sbjct: 777 YADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVFLSQD 820



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/619 (22%), Positives = 286/619 (46%), Gaps = 20/619 (3%)

Query: 6   PPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLH 62
           P A S      + LR  A + R +  A      L  C   + L++   +HAR ++  G  
Sbjct: 40  PSAPSPSPRDDERLRLRAEELRSYAAA------LQGCAASRALRRGKALHAR-LLRSGPR 92

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            +  L  +L++ Y   G L+ ++ VF+ +   + + +  ++  ++  G+    L ++ +M
Sbjct: 93  PDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEM 152

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCD 180
           + + + P        +++C+   D     ++HAQ VKL   FD +  V  +LVE Y+ C 
Sbjct: 153 SEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPY--VSSSLVEAYVSCG 210

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
                E+ ++    +   S WN+L++   ++G   K   +F  +   G E    TL  +L
Sbjct: 211 EVDVAERALLDSPVRSDVS-WNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVL 269

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           +  +EL   + G+ VH + +      D  +N  L+ MYSK  S EDA  +F ++ + D V
Sbjct: 270 KCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVV 329

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
             ++MIS + +     E+ ++ M M   G + + +T +      S   ++   + +HA++
Sbjct: 330 HCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHI 389

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           +++G      V ++++ MY +   +  A   FD ++   + SW++++ G+ + +     L
Sbjct: 390 VKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGL 449

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           R+F E+  EGV  +  T + IL  C ++  L     +H   +K G      V+  +   Y
Sbjct: 450 RIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMY 509

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            + GC   A  +FD  ++  +D+ +W  ++S YAK  +  +  + +  M + + RP+  T
Sbjct: 510 VQAGCFTNARLVFD--RLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDAT 567

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
               L+ C +   +  G  +     +S G+  S    A +V++  + G++ +A E++ D 
Sbjct: 568 LATSLSVCSDLACLGSGLQLHSYTIKS-GWNSSVVSSA-LVDMYVKCGNLADA-EMLFDE 624

Query: 601 PFKPDARVWGPLLSACKMH 619
               D   W  ++     H
Sbjct: 625 SDTHDLVEWNTIICGYAQH 643



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 113/511 (22%), Positives = 221/511 (43%), Gaps = 16/511 (3%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK----G 188
           +Y   ++ C+       G+ +HA++++ G      + D+L+  Y KC G   + +    G
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKC-GRLADARSVFDG 120

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           M  R        W +++S     G +  +  LF  M  EG   +   L   L++      
Sbjct: 121 MPHRDV----VAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSD 176

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L     VH  AV  +   D  V+++L+  Y     ++ A+        +  V WN +++ 
Sbjct: 177 LGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNE 236

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y + G   + + +   +V SG     +T    +     +   + G+ +H  V++ G +  
Sbjct: 237 YARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETD 296

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             ++N LI+MY +C     A ++F  +    VV  S MI  +  HD + EA  +F +M  
Sbjct: 297 RVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSD 356

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            GV+ +  T + +       G +   + +H + +K G +    V  AI   Y K G ++ 
Sbjct: 357 MGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQD 416

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A   FD   +   DI +WN+++S +    +     +++ ++    V  +  T++G+L  C
Sbjct: 417 AILAFD--LMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCC 474

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +   +  G  +   + +S G++   +    ++++  +AG    AR LV D   + D   
Sbjct: 475 TSLMDLRFGCQVHACVLKS-GFQGDYDVSKMLLDMYVQAGCFTNAR-LVFDRLKERDVFS 532

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPEN 639
           W  ++S    +++T+  E   E   SM  EN
Sbjct: 533 WTVVMST---YAKTDEGEKAIECFRSMLREN 560


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/672 (31%), Positives = 365/672 (54%), Gaps = 21/672 (3%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + LQ+   IHA+ ++  G   ++ L+++L++ YA  G +  ++ VF SIT+ 
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQ-LLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNK 74

Query: 95  NSLLYGTILKNLSKFGE--YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           + + +  ++   S+ G   Y   + ++++M  ++  P   T+  V  + S   +   G +
Sbjct: 75  DVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQ 134

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
            HA  +K    +D F  VG +L+  Y K     +  K      F  +  R    W ++IS
Sbjct: 135 AHALAIKTSNFYDVF--VGSSLINMYCKIGCMLDARK-----VFDTIPERNTVSWATIIS 187

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
                  + +++ELF LMR E    D     ++L +      +  G+ +HC+A+ +    
Sbjct: 188 GYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLS 247

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
             SV  AL++MY K   L+DA   F+   DKD + W+ MI+ Y Q+G   E+L L   M 
Sbjct: 248 IASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMH 307

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            +G +   FT +  +++ S +  +E GKQ+H   L+ G + Q+    +L+DMY +C  L 
Sbjct: 308 LNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLV 367

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            ARK FD +K   +V W+SMI GY  + ++  AL L+  M++E +    +T+ ++L AC 
Sbjct: 368 DARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACS 427

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++ ALE  K +H  ++K G +    + +A+   YAKCG +E    +F   ++ S+DI+TW
Sbjct: 428 SLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVF--RRMPSRDIMTW 485

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+MIS  +++G+  +  +L+ +++    +PD +TF+ +L+AC + GLVE G++ F+ M +
Sbjct: 486 NAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLD 545

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G  P  EHYA MV++L RAG + E +E ++         +W  LL AC+ +   EL  
Sbjct: 546 EFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGA 605

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
              EKL+ +  + +  Y+LLS+IY A G+ + V ++R  ++ RG+ K PGCSWIE+   V
Sbjct: 606 YAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQV 665

Query: 687 HEFWAADQSHPQ 698
           H F   DQ HPQ
Sbjct: 666 HVFVVGDQIHPQ 677



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 160/548 (29%), Positives = 263/548 (47%), Gaps = 9/548 (1%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M L  + P   ++  ++  C+   D   G+ IHAQ+++ G  S   + ++LV  Y KC  
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF--ELFKLMRMEGAEFDSGTLINL 239
             + +        KD+ S WN LI+   Q G    SF  ELF+ MR E    +  T   +
Sbjct: 61  IVKAKLVFESITNKDVVS-WNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGV 119

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
             +         G   H +A+ +    D+ V ++L++MY K+  + DA+ +FD + +++ 
Sbjct: 120 FTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNT 179

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V W  +IS Y       E+ EL   M R     D F   + +S+++    + +GKQ+H  
Sbjct: 180 VSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCL 239

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            L+NG     SV N+L+ MY +C  L+ A K F+    K  ++WS+MI GY     S EA
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEA 299

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF  M L G +    T + ++ AC +IGALE  K +HGYS+K G        TA+   
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDM 359

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG +  A + FD  K    DI+ W SMIS YA++G+      LY +M+   + P  +
Sbjct: 360 YAKCGSLVDARKGFDYLK--EPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHEL 417

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T   +L AC +   +E+G+ I  +  + YG+       +++  +  + G +++   + + 
Sbjct: 418 TMASVLRACSSLAALEQGKQIHAQTIK-YGFSLEVPIGSALSTMYAKCGSLEDGNLVFRR 476

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP + D   W  ++S    + E   A    E+L         +YV   N+ +A      V
Sbjct: 477 MPSR-DIMTWNAMISGLSQNGEGLKALELFEEL--RHGTTKPDYVTFVNVLSACSHMGLV 533

Query: 660 AKMRTFLR 667
            + + + R
Sbjct: 534 ERGKVYFR 541


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/650 (33%), Positives = 353/650 (54%), Gaps = 12/650 (1%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
           L L +NL+  Y   G   +++++F+ +   N + + +++   ++ G Y + + ++K+  +
Sbjct: 54  LFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARM 113

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
             +   + T+   +  C   LD   G  IHA +   G      + ++L++ Y KC  G  
Sbjct: 114 SDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKC--GRI 171

Query: 185 NEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           +   ++     +L S  WNSLI+  V+ G +++   L   M   G   +S  L + L++ 
Sbjct: 172 DWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKAC 231

Query: 244 VE--LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
                 S+E G+++H  AV      D+ V TALL  Y+K+  LEDA  +F  M D + V+
Sbjct: 232 GSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVM 291

Query: 302 WNIMISAYYQ-----SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           +N MI+ + Q       F  E++ L   M   G +   FT  + + + ST++  E GKQ+
Sbjct: 292 YNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQI 351

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           HA + +        + N+L+++Y     +    K F S     VVSW+S+I G+V + Q 
Sbjct: 352 HAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQF 411

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
              L LF E+   G + D  TI  +L AC N+ A++  + +H Y++K G+ + + +  + 
Sbjct: 412 EGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQ 471

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              YAKCG I+ A   F E K  + DI++W+ MIS+ A+HG   +   L+  MK S + P
Sbjct: 472 ICMYAKCGDIDSANMTFKETK--NPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAP 529

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           + ITFLG+L AC + GLVEEG   F+ MK+ +G  P+ +H A +V+LLGRAG + EA   
Sbjct: 530 NHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESF 589

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           + D  F+ D  +W  LLSAC++H  T+  +  AE++I +EPE A +YVLL NIY  AG  
Sbjct: 590 IMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQ 649

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
               ++R  ++DRG+KK PG SWIE+G +VH F A D+SHP +  IY  L
Sbjct: 650 MPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQL 699



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 196/393 (49%), Gaps = 11/393 (2%)

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   DS T   L++ +    SL  G++ H   + + F   L +   LL MY K    + A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K LFD+M  ++ V WN +IS Y Q GF  E + L      S  R D FT   A+S     
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            ++  G+ +HA +  +G    V + NSLIDMYC+C  ++ AR +F+S      VSW+S+I
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN--IGALEHVKYLHGYSMKLG 465
            GYV    + E LRL  +M   G+ ++   + + L AC +    ++E  K LHG ++KLG
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK- 524
           L+    V TA+  +YAK G +E A ++F  + +   +++ +N+MI+ + +    +  F  
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIF--KLMPDPNVVMYNAMIAGFLQMETMADEFAN 311

Query: 525 ----LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
               L+ +M+   ++P   TF  +L AC      E G+ I  ++ + Y  +  +    ++
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNAL 370

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V L   +G +++  +     P K D   W  L+
Sbjct: 371 VELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLI 402



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 176/371 (47%), Gaps = 10/371 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF----GEY-EK 114
           GL  ++++ + L+D+YA +G L  + ++F  +  PN ++Y  ++    +      E+  +
Sbjct: 253 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANE 312

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + ++ +M  + M P+E T+  ++++CS +  F  G++IHAQ+ K    S + +G+ALVE
Sbjct: 313 AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVE 372

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y    G  E+         K     W SLI   VQNG+ E    LF  +   G + D  
Sbjct: 373 LY-SLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEF 431

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+  +L +   L +++ G  +H  A+ +       +  + + MY+K   ++ A M F + 
Sbjct: 432 TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET 491

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            + D V W++MIS+  Q G  KE+++L   M  SG   +  T +  + + S    +E G 
Sbjct: 492 KNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGL 551

Query: 355 QMHANVLRNGSDYQVSVHNS--LIDMYCECEDLNCARK-IFDSVKTKTVVSWSSMIKGYV 411
           + +  +++       +V +S  ++D+      L  A   I DS      V W S++    
Sbjct: 552 R-YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACR 610

Query: 412 THDQSLEALRL 422
            H  +    R+
Sbjct: 611 VHKATDTGKRV 621



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 25  QTRPHMTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           Q+R    +  +FS +L  C   +  +   QIHA+ I  + L  +  + + L++ Y+  G 
Sbjct: 321 QSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQ-IFKYNLQSDEFIGNALVELYSLSGS 379

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           +    + F+S    + + + +++    + G++E  L ++ ++      P E T   ++ +
Sbjct: 380 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 439

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+ L    SGE+IHA  +K G  +F  + ++ +  Y KC           + K  D+ S 
Sbjct: 440 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVS- 498

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVA 259
           W+ +IS   Q+G ++++ +LF+LM+  G   +  T + +L +      +E G R    + 
Sbjct: 499 WSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMK 558

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAK-MLFDKMSDKDRVVWNIMISA 308
                  ++  +  ++ +  +   L +A+  + D   + D V+W  ++SA
Sbjct: 559 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSA 608


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/680 (31%), Positives = 374/680 (55%), Gaps = 14/680 (2%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L   C N Q  + +HAR ++   + QN+ +S+ L++ Y  LG ++L++  F+ I + + 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQI-QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDV 117

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             +  ++    + G   + +  +    L S + P   T+P V+++C  ++D   G KIH 
Sbjct: 118 YAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHC 174

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
             +K GF     V  +L+  Y +            +   +D+ S WN++IS   Q+G ++
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS-WNAMISGYCQSGNAK 233

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++  L   +R      DS T+++LL +  E      G  +H  ++      +L V+  L+
Sbjct: 234 EALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLI 289

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            +Y++   L D + +FD+M  +D + WN +I AY  +  P  ++ L   M  S  + D  
Sbjct: 290 DLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCL 349

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDS 394
           T I+  S +S + +I   + +    LR G   + +++ N+++ MY +   ++ AR +F+ 
Sbjct: 350 TLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNW 409

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEH 453
           +    V+SW+++I GY  +  + EA+ +++ M+ EG +  +  T +++LPAC   GAL  
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              LHG  +K GL     V T++   Y KCG +E A  LF   +I   + + WN++I+ +
Sbjct: 470 GMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLF--YQIPRVNSVPWNTLIACH 527

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
             HG   +   L+ +M    V+PD ITF+ LL+AC ++GLV+EG+  F+ M+  YG  PS
Sbjct: 528 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 587

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HY  MV++ GRAG ++ A + +K M  +PDA +WG LLSAC++H   +L ++ +E L 
Sbjct: 588 LKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLF 647

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EPE+ G +VLLSN+YA+AGKW GV ++R+    +GL+KTPG S +E+   V  F+  +
Sbjct: 648 EVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGN 707

Query: 694 QSHPQADAIYTILGILELEI 713
           Q+HP  + +Y  L  L+ ++
Sbjct: 708 QTHPMYEEMYRELTALQAKL 727


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/663 (31%), Positives = 367/663 (55%), Gaps = 17/663 (2%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L  N +L ++LI  Y        ++QVF+ + + N + + +++    + G     L ++ 
Sbjct: 82  LAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFS 141

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK-- 178
            M        +      +R+C+ L D  +G ++HA  +K    S   V +ALV  Y K  
Sbjct: 142 SMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNG 201

Query: 179 -CDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFD 232
             D GF     + +R K KDL S W S+I+   Q G   ++ ++F+ M +EG+    EF 
Sbjct: 202 LVDDGFM----LFERIKDKDLIS-WGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFH 256

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
            G+     R+   + S E G  +H +++     +DL V  +L  MY++  +L+ A++ F 
Sbjct: 257 FGSA---FRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFY 313

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           ++   D V WN +++AY   G   E+L L   M  SG R D  T    + +      +  
Sbjct: 314 RIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 373

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+ +H+ +++ G D  VSV NSL+ MY  C DL+ A  +F  +K + VV+W+S++     
Sbjct: 374 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQ 433

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           H+   E L+LFS +      +D +++ N+L A   +G  E VK +H Y+ K GL     +
Sbjct: 434 HNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRML 493

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
           +  +  +YAKCG ++ A  LF E   +++D+ +W+S+I  YA+ G   + F L+++M+  
Sbjct: 494 SNTLIDTYAKCGSLDDAMRLF-EIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL 552

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            +RP+ +TF+G+LTAC   G V EG   +  M+  YG  P++EH + +V+LL RAG + E
Sbjct: 553 GIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTE 612

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A   +  MPF+PD  +W  LL+A KMH++ E+ +  AE +++++P ++  YVLL NIYAA
Sbjct: 613 AANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAA 672

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           +G WN  A+++  +R  G+KK+PG SW+++   +  F   D+SHP+++ IY +L ++ +E
Sbjct: 673 SGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAMLELIGME 732

Query: 713 IME 715
           +++
Sbjct: 733 MIK 735


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 321/570 (56%), Gaps = 8/570 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G+++HA V+KLG  +   + + ++  Y+KC    +  K   +   K++ S WN+LI   V
Sbjct: 92  GKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVS-WNTLICGVV 150

Query: 210 QNGKS----EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +           F  F+ M +E    +  TL  LLR+++EL  + + R +HC  + S F 
Sbjct: 151 EGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD 210

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  V +AL+  Y+K   +++A+  FD++S +D V+WN+M+S Y  +G   ++  +   M
Sbjct: 211 SNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLM 270

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G + D FT  + ++S   + +   GKQ+H  ++R   D  V V ++L+DMY + E++
Sbjct: 271 RLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENI 330

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             ARK FD +  K +VSW++MI GY  H    EA+RL  EM       D + + +IL +C
Sbjct: 331 EDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSC 390

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            N+ A   V  +H Y ++ G  +  S+  A+  +Y+KCG I  A + F    +   DII+
Sbjct: 391 GNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSF--SSVAEPDIIS 448

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W S++ AYA HG   +  +++ +M  S+VRPD + FLG+L+AC + G V EG   F  M 
Sbjct: 449 WTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMI 508

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             Y   P  EHY  +++LLGRAG +DEA  L+  MP +P +   G  L ACK+H    LA
Sbjct: 509 NVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHRNVGLA 568

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
              +EKL  MEP    NY L+SN+YA+ G W  VA++R  +R+R   K PGCSW+EI   
Sbjct: 569 RWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMEIAGE 628

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME 715
           VH F + D++HP+A  +Y +L +L + +ME
Sbjct: 629 VHTFVSRDKTHPRAVQVYGMLDLL-VRLME 657



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 172/608 (28%), Positives = 269/608 (44%), Gaps = 88/608 (14%)

Query: 32  ATHSFSLLNLCENPQHLQQIHARYIILHG---LHQNLILSSNLIDSYANLGLLSLSQQV- 87
           +THSFS         H  +I A+   LHG   LH ++I          N  LLSL  QV 
Sbjct: 71  STHSFS--------SHALKISAKLGFLHGGKQLHAHVI-------KLGNCNLLSLQNQVL 115

Query: 88  --------FN------------SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
                   FN            ++ S N+L+ G +  N  KF         ++QM L+ M
Sbjct: 116 HVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGN-CKFALVRLGFHYFRQMVLEMM 174

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            P   T   ++R+   L D     ++H  ++K GFDS   VG ALV+ Y K   G  +E 
Sbjct: 175 APNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKF--GLVDEA 232

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              Q  F ++ SR    WN ++S    NG   K+F +FKLMR+EG + D+ T  +++ S 
Sbjct: 233 ---QSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSC 289

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L S  LG+ VH + +   F  D+ V +AL+ MYSK  ++EDA+  FD M  K+ V W 
Sbjct: 290 GVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWT 349

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI  Y Q G  KE++ LL  M+R     D     + +SS   +       Q+HA V+ N
Sbjct: 350 TMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVEN 409

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +  +S+ N+L+  Y +C  +  A + F SV    ++SW+S++  Y  H  S E + +F
Sbjct: 410 GFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVF 469

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M    V  D V  + +L AC + G +  ++ LH +++ + +  +              
Sbjct: 470 EKMLFSNVRPDKVAFLGVLSACAHGGFV--LEGLHYFNLMINVYQI-------------- 513

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
                   + D E         +  +I    + G   +   L T M        L  FLG
Sbjct: 514 --------MPDSEH--------YTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLG 557

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMPF 602
                 N GL           ++ +  EP++  +Y+ M N+    GH  +   + K M  
Sbjct: 558 ACKVHRNVGLARWAS------EKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRE 611

Query: 603 KPDARVWG 610
           + D +V G
Sbjct: 612 RCDFKVPG 619



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 183/398 (45%), Gaps = 8/398 (2%)

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L+ + +L  L  G+ +H   +    C  LS+   +L +Y K     D   +FD+M  K+ 
Sbjct: 80  LKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNV 139

Query: 300 VVWNIMISAYYQS----GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           V WN +I    +        +        MV      +  T    + +   + ++   +Q
Sbjct: 140 VSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQ 199

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H  +L++G D    V ++L+D Y +   ++ A+  FD V ++ +V W+ M+  Y  +  
Sbjct: 200 LHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGV 259

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +A  +F  M+LEGV+ D  T  +++ +C  +G+    K +HG  ++L  +    V +A
Sbjct: 260 QGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASA 319

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+K   IE A + FD   +  K+I++W +MI  Y +HGD  +  +L  +M +    
Sbjct: 320 LVDMYSKNENIEDARKAFDGMIV--KNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTY 377

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +    +L++C N     E   +   + E+ G+E       ++V+   + G +  A +
Sbjct: 378 PDELALASILSSCGNLSATSEVVQVHAYVVEN-GFEAFLSIANALVSAYSKCGSIGSAFQ 436

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
               +  +PD   W  L+ A   H  ++      EK++
Sbjct: 437 SFSSVA-EPDIISWTSLMGAYAFHGLSKEGVEVFEKML 473


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  371 bits (952), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 204/660 (30%), Positives = 360/660 (54%), Gaps = 5/660 (0%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            QQIHA   + HGL  N+ + S+LI+ Y   G +S +++VF+  T  N +++  +L    +
Sbjct: 347  QQIHAA-AVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQ 405

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                E+T+ +++ M    +   + T+  V+ +C  L     G ++H   +K   D+   V
Sbjct: 406  NDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFV 465

Query: 169  GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +A+++ Y K  G  +  K +           WN+LI     N + E++  + K M+  G
Sbjct: 466  ANAMLDMYSKL-GAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYG 524

Query: 229  AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
               D  +    + +   +++ E G+ +HC ++  + C + +V ++L+ +YSK   +E ++
Sbjct: 525  IAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSR 584

Query: 289  MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
             +   +     V  N +I+   Q+    E++EL   +++ GF+   FT  + +S  +   
Sbjct: 585  KVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPV 644

Query: 349  NIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSM 406
            +   GKQ+H+  L++   +   S+  SL+ +Y +C+ L  A K+   V   K +V W++ 
Sbjct: 645  SSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTAT 704

Query: 407  IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
            I GY  +  S ++L +F  M+   V  D  T  ++L AC  I AL   K +HG  +K G 
Sbjct: 705  ISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGF 764

Query: 467  NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
             S  +  +A+   Y+KCG +  + E+F E K + ++I+ WNSMI  +AK+G  ++   L+
Sbjct: 765  VSYETAASALMDMYSKCGDVISSFEIFKELK-NKQNIMPWNSMIVGFAKNGYANEALLLF 823

Query: 527  TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             +M++S ++PD +T LG+L AC +AGL+ EGR +F  M + YG  P  +HYA +++LLGR
Sbjct: 824  QKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGR 883

Query: 587  AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
             GH+ EA+E++  +PF+ D  +W   L+AC+MH + E  ++ A+KL+ MEP+ +  YV L
Sbjct: 884  GGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFL 943

Query: 647  SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            S+++AAAG W      R  +R++G+ K PGCSWI +G   + F   D  HP    IY +L
Sbjct: 944  SSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKTNLFVVQDTHHPDTLGIYKML 1003



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/545 (27%), Positives = 284/545 (52%), Gaps = 4/545 (0%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I + A++G LS ++ +   I  P+++ +  ++ + S+ G   +   +YK M  Q + P
Sbjct: 266 TIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMP 325

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T+  ++ + + +  F  G++IHA  VK G D+   VG +L+  Y+K  G   + K +
Sbjct: 326 TRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVK-HGCISDAKKV 384

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
                +     WN+++   VQN   E++ ++F+ MR    E D  T +++L + + L SL
Sbjct: 385 FDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSL 444

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           ++GR VHC+ + +    DL V  A+L MYSKL +++ AK LF  +  KD V WN +I   
Sbjct: 445 DIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGL 504

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
             +   +E++ +L  M   G   D  +   A+++ S ++  E GKQ+H   ++       
Sbjct: 505 AHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNH 564

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
           +V +SLID+Y +  D+  +RK+   V   ++V  +++I G V +++  EA+ LF ++  +
Sbjct: 565 AVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKD 624

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEM 488
           G +    T  +IL  C    +    K +H Y++K   LN  +S+  ++   Y KC  +E 
Sbjct: 625 GFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLED 684

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A +L  E   D K+++ W + IS YA++G   Q   ++ +M+  DVR D  TF  +L AC
Sbjct: 685 ANKLLAEVP-DHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKAC 743

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
                + +G+ I   + +S G+   +   ++++++  + G +  + E+ K++  K +   
Sbjct: 744 SEIAALTDGKEIHGLIIKS-GFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMP 802

Query: 609 WGPLL 613
           W  ++
Sbjct: 803 WNSMI 807



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/567 (21%), Positives = 269/567 (47%), Gaps = 39/567 (6%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   ++  G   +    + L+D YA    +  +++VF+ I  P+++ + +++    +
Sbjct: 180 RQVHCD-VLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHR 238

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G Y++ L ++ +M      P + TY  +I + + +                        
Sbjct: 239 VGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASM------------------------ 274

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
                       G   + + +++R        WN++IS   Q+G   + F L+K M+ +G
Sbjct: 275 ------------GRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQG 322

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T  ++L +   + + + G+ +H  AV      ++ V ++L+++Y K   + DAK
Sbjct: 323 LMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAK 382

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD  ++K+ V+WN M+  + Q+   +E++++   M R+   AD FT ++ + +   + 
Sbjct: 383 KVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLD 442

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           +++ G+Q+H   ++N  D  + V N+++DMY +   ++ A+ +F  +  K  VSW+++I 
Sbjct: 443 SLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIV 502

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G   +++  EA+ +   MK  G+  D V+    + AC NI A E  K +H  S+K  + S
Sbjct: 503 GLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCS 562

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             +V +++   Y+K G +E + ++     +D+  ++  N++I+   ++    +  +L+ Q
Sbjct: 563 NHAVGSSLIDLYSKFGDVESSRKVL--AHVDASSMVPINALITGLVQNNREDEAIELFQQ 620

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           + +   +P   TF  +L+ C        G+ +     +S           S+V +  +  
Sbjct: 621 VLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCK 680

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSA 615
            +++A +L+ ++P   +   W   +S 
Sbjct: 681 LLEDANKLLAEVPDHKNLVEWTATISG 707



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/556 (24%), Positives = 251/556 (45%), Gaps = 55/556 (9%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT--ILKNLSK 108
           +HAR + L GL     L   L+D Y   G +  + +     T   +       +L   ++
Sbjct: 78  LHARVLRL-GLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHAR 136

Query: 109 FGEYEKTLLVYKQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
            G     L  ++++       P +     V+ +CS L     G ++H  V+K GF S   
Sbjct: 137 SGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAF 196

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
               LV+ Y KC      E    +R F  +       W S+I+   + G+ +++  LF  
Sbjct: 197 CQAGLVDMYAKC-----VEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSR 251

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G+  D  T + ++                                   S  + +  
Sbjct: 252 MEKMGSAPDQVTYVTII-----------------------------------STLASMGR 276

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L DA+ L  ++     V WN +IS+Y QSG   E   L   M R G      T  + +S+
Sbjct: 277 LSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSA 336

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            ++M   + G+Q+HA  +++G D  V V +SLI++Y +   ++ A+K+FD    K +V W
Sbjct: 337 AASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMW 396

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++M+ G+V +D   E +++F  M+   +E D  T +++L AC+N+ +L+  + +H  ++K
Sbjct: 397 NAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIK 456

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             +++   V  A+   Y+K G I++A  LF    I  KD ++WN++I   A + +  +  
Sbjct: 457 NSMDADLFVANAMLDMYSKLGAIDVAKALF--SLIPGKDSVSWNALIVGLAHNEEEEEAV 514

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMV 581
            +  +MK   + PD ++F   + AC N    E G+ I      S  Y     H   +S++
Sbjct: 515 YMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIH---CASIKYNVCSNHAVGSSLI 571

Query: 582 NLLGRAGHMDEARELV 597
           +L  + G ++ +R+++
Sbjct: 572 DLYSKFGDVESSRKVL 587



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD--SVKTKTVVSWSSMIKGYVTH 413
           +HA VLR G   +  + ++L+D+Y     +  A +     +    +  + SS++  +   
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARS 137

Query: 414 DQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
               + L  F  ++   G   D   +  +L AC  +GALE  + +H   +K G  S +  
Sbjct: 138 GSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFC 197

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
              +   YAKC  ++ A  +FD   I   D I W SMI+ Y + G + Q   L+++M++ 
Sbjct: 198 QAGLVDMYAKCVEVKDARRVFD--GIACPDTICWASMIAGYHRVGRYQQALALFSRMEKM 255

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD +T++ +++   + G + + R + K ++      PS   + ++++   ++G   E
Sbjct: 256 GSAPDQVTYVTIISTLASMGRLSDARTLLKRIQ-----MPSTVAWNAVISSYSQSGLESE 310

Query: 593 ARELVKDMPFK---PDARVWGPLLSA 615
              L KDM  +   P    +  +LSA
Sbjct: 311 VFGLYKDMKRQGLMPTRSTFASMLSA 336


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/668 (32%), Positives = 364/668 (54%), Gaps = 14/668 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS----PNSLLYGTILKN 105
           Q+HA  +    +H ++ +++ L+  Y   G++  ++++F+         N++ + T++  
Sbjct: 121 QVHALAVATRLVH-DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISA 179

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
             K  +    + V+++M      P E  +  V+ +C+   D  +G ++H  VV+ G++  
Sbjct: 180 YVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKD 239

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
               +ALV+ Y K  G  E    + ++        WN+ IS  V +G   ++ EL   M+
Sbjct: 240 VFTANALVDMYSKL-GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMK 298

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSDFCKDLSVNTALLSMYSKLAS 283
             G   +  TL ++L++     +  LGR +H   V  V+DF  D  V   L+ MY+K   
Sbjct: 299 SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADF--DEFVAVGLVDMYAKHGF 356

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL-FTAIAAV- 341
           L+DA+ +FD M  +D ++WN +IS     G   E L L   M + G   D+  T +A+V 
Sbjct: 357 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVL 416

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            S ++ + I   +Q+HA   + G      V N LID Y +C  L+ A K+F   ++  ++
Sbjct: 417 KSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDII 476

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           S ++M+      D   +A++LF +M  +G+E D   + ++L AC ++ A E  K +H + 
Sbjct: 477 SSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHL 536

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K    S      A+  +YAKCG IE A   F    +  + I++W++MI   A+HG   +
Sbjct: 537 IKRQFTSDVFAGNALVYAYAKCGSIEDADMAF--SGLPERGIVSWSAMIGGLAQHGHGKR 594

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ +M    V P+ IT   +L+AC +AGLV++ +  F+ MKE++G + ++EHYA M+
Sbjct: 595 ALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMI 654

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           ++LGRAG +++A ELV +MPF+ +A VWG LL A ++H + EL  + AEKL ++EPE +G
Sbjct: 655 DILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSG 714

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            +VLL+N YA+AG W+ +AK+R  ++D  +KK P  SW+EI   VH F   D+SHP    
Sbjct: 715 THVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRD 774

Query: 702 IYTILGIL 709
           IY  L  L
Sbjct: 775 IYGKLAEL 782



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/515 (25%), Positives = 243/515 (47%), Gaps = 53/515 (10%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W+SL++    NG    +   F+ MR  G   +   L  +L+   +++    G  VH +AV
Sbjct: 71  WSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVR---FGAQVHALAV 127

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM----SDKDRVVWNIMISAYYQSGFPK 316
            +    D+ V  AL+++Y     +++A+ +FD+      +++ V WN MISAY ++    
Sbjct: 128 ATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSG 187

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           +++ +   MV SG R + F     V++ +  +++E G+Q+H  V+R G +  V   N+L+
Sbjct: 188 DAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALV 247

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           DMY +  D+  A  +F+ +    VVSW++ I G VTH     AL L  +MK  G+  +  
Sbjct: 248 DMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVF 307

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T+ ++L AC   GA    + +HG+ +K   +    V   +   YAK G ++ A ++FD  
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFD-- 365

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS--DVRPDLITFLGLLTACVNA--- 551
            +  +D+I WN++IS  +  G   +   L+ +M++   D+  +  T   +L +  ++   
Sbjct: 366 FMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAI 425

Query: 552 -------------GLVEEGRIIFKEMKESYGYEPSQEHYA----------------SMVN 582
                        GL+ +  +I   + +SY ++  Q  YA                +M+ 
Sbjct: 426 CHTRQVHALAEKIGLLSDSHVI-NGLIDSY-WKCGQLDYAIKVFKESRSDDIISSTTMMT 483

Query: 583 LLGRAGHMDEARELVKDM---PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
            L +  H ++A +L   M     +PD+ V   LL+AC   S  E  +     LI  +  +
Sbjct: 484 ALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTS 543

Query: 640 ---AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
              AGN ++ +  YA  G         + L +RG+
Sbjct: 544 DVFAGNALVYA--YAKCGSIEDADMAFSGLPERGI 576



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 178/350 (50%), Gaps = 17/350 (4%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL++YS+      A+ +FD++ D   V W+ +++AY  +G P+++L     M   G   +
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            F A+  V  +    ++ +G Q+HA  +     + V V N+L+ +Y     ++ AR++FD
Sbjct: 103 EF-ALPVV--LKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFD 159

Query: 394 SV----KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV---EVDFVTIINILPACV 446
                   +  VSW++MI  YV +DQS +A+ +F EM   G    E  F  ++N   AC 
Sbjct: 160 EYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVN---ACT 216

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
               LE  + +HG  ++ G         A+   Y+K G IEMA  +F  EK+ + D+++W
Sbjct: 217 GSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVF--EKMPAADVVSW 274

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+ IS    HG   +  +L  QMK S + P++ T   +L AC  AG    GR I   M +
Sbjct: 275 NAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK 334

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           +   +  +     +V++  + G +D+AR++   MP + D  +W  L+S C
Sbjct: 335 AVA-DFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGC 382



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 20/336 (5%)

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           +A++   T +++  G  +H+++L++G        N L+ +Y  C   + AR +FD +   
Sbjct: 9   SALARFGTSRSLFAGAHLHSHLLKSG--LLAGFSNHLLTLYSRCRLPSAARAVFDEIPDP 66

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC--VNIGALEHVKY 456
             VSWSS++  Y  +    +AL  F  M+  GV  +   +  +L     V  GA      
Sbjct: 67  CHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGA-----Q 121

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE--EKIDSKDIITWNSMISAYA 514
           +H  ++   L     V  A+   Y   G ++ A  +FDE       ++ ++WN+MISAY 
Sbjct: 122 VHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYV 181

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           K+        ++ +M  S  RP+   F  ++ AC  +  +E GR +   +  + GYE   
Sbjct: 182 KNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRT-GYEKDV 240

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
               ++V++  + G ++ A  + + MP   D   W   +S C  H     A    E L+ 
Sbjct: 241 FTANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTHGHDHRA---LELLLQ 296

Query: 635 MEPEN-AGNYVLLSNIY---AAAGKWNGVAKMRTFL 666
           M+      N   LS++    A AG +N   ++  F+
Sbjct: 297 MKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFM 332


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 372/681 (54%), Gaps = 15/681 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGL-HQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           +LL  CE    L+    +H  Y + +G+   N  +++ LI  Y    +  L   +F+ + 
Sbjct: 159 ALLLACEGASELRLGRGVHG-YCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMV 216

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + +  ++      G+Y K L ++ QM +  +     T    +++C+ L     G++
Sbjct: 217 VRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQ 276

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH   +K  F     + +AL+  Y   +G  E+   + +         WNS+IS     G
Sbjct: 277 IHQLAIKFEFVEDLYILNALLNMYSN-NGSLESSHQLFESVPNRDAPLWNSMISAYAAFG 335

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS-LELGRIVHCVAVVSDFCKDLSVN 271
             E++ +LF  M+ EG + D  T++ +L    EL S L  G+ +H   + S    D S+ 
Sbjct: 336 CHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLG 395

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            ALLSMY++L  +E  + +FD+M   D + WN MI A  ++    ++ EL   M  S  +
Sbjct: 396 NALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIK 455

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            + +T I+ +++   +  +++G+ +H  V+++  +    +  +L DMY  C D   AR +
Sbjct: 456 PNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDL 515

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+    + ++SW++MI  YV ++Q+ +AL LF  M  E  E + VTIIN+L +  ++  L
Sbjct: 516 FEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIINVLSSFTHLATL 574

Query: 452 EHVKYLHGYSMKLGLN---SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
              + LH Y  + G +    LS  N A    YA+CG ++ A  +F  + +  ++II+WN+
Sbjct: 575 PQGQSLHAYVTRRGFSLGLDLSLAN-AFITMYARCGSLQSAENIF--KTLPKRNIISWNA 631

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI+ Y  +G  S     ++QM +   RP+ +TF+ +L+AC ++G +E G  +F  M + +
Sbjct: 632 MIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDF 691

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
              P   HY+ +V+LL R G +DEARE +  MP +PDA VW  LLS+C+ +S+ + A+  
Sbjct: 692 NVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTI 751

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
            EKL  +EP NAGNYVLLSN+YA AG W  V ++RT+L+++GL+K PG SWI +   VH 
Sbjct: 752 FEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHC 811

Query: 689 FWAADQSHPQADAIYTILGIL 709
           F A D+SHPQ+D IY  L IL
Sbjct: 812 FSAGDRSHPQSDKIYAKLSIL 832



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/594 (26%), Positives = 307/594 (51%), Gaps = 22/594 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + IH R I    L  ++ + + ++D Y   G +  ++ VF++++  + +L+  ++     
Sbjct: 73  KSIH-RSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-FDSFDD 167
           +G YE+ +L+ ++M  +++ P   T   ++ +C    +   G  +H   ++ G FDS   
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 191

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           V  AL+ FY++ D        ++   F  +  R    WN++IS     G   K+ ELF  
Sbjct: 192 VATALIGFYLRFD------MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQ 245

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M ++  +FD  T++  +++  EL SL+LG+ +H +A+  +F +DL +  ALL+MYS   S
Sbjct: 246 MLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGS 305

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LE +  LF+ + ++D  +WN MISAY   G  +E+++L + M   G + D  T +  +S 
Sbjct: 306 LESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSM 365

Query: 344 ISTMKN-IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
              + + +  GK +HA+V+++G     S+ N+L+ MY E   +   +KIFD +K   ++S
Sbjct: 366 CEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIIS 425

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W++MI     +    +A  LF  M+   ++ +  TII+IL AC ++  L+  + +HGY M
Sbjct: 426 WNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVM 485

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K  +     + TA+   Y  CG    A +LF  E    +D+I+WN+MI++Y K+    + 
Sbjct: 486 KHSIEINQPLRTALADMYMNCGDEATARDLF--EGCPDRDLISWNAMIASYVKNNQAHKA 543

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE---SYGYEPSQEHYAS 579
             L+ +M  S+  P+ +T + +L++  +   + +G+ +   +     S G + S  +  +
Sbjct: 544 LLLFHRMI-SEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLAN--A 600

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            + +  R G +  A  + K +P K +   W  +++   M+     A L   +++
Sbjct: 601 FITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNGRGSDAMLAFSQML 653



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/562 (27%), Positives = 281/562 (50%), Gaps = 23/562 (4%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +++K+ +     +  L  Y QM    + P   T P V+++C+       G+ IH  + 
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 159 KLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
             G D  DD  VG A+V+FY KC  GF  +   +   F  +  R    WN+++   V  G
Sbjct: 81  --GTDLMDDVRVGTAVVDFYCKC--GFVEDARCV---FDAMSDRDVVLWNAMVYGYVGWG 133

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVN 271
             E++  L + M  E    +S T++ LL +      L LGR VH   + +  F  +  V 
Sbjct: 134 CYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVA 193

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TAL+  Y +   +    +LFD M  ++ V WN MIS YY  G   ++LEL + M+    +
Sbjct: 194 TALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 252

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T + AV + + + +++ GKQ+H   ++      + + N+L++MY     L  + ++
Sbjct: 253 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 312

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA- 450
           F+SV  +    W+SMI  Y       EA+ LF  M+ EGV+ D  T++ +L  C  + + 
Sbjct: 313 FESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASG 372

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   K LH + +K G+   +S+  A+   Y +  C+E   ++FD  ++   DII+WN+MI
Sbjct: 373 LLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFD--RMKGVDIISWNTMI 430

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
            A A++   +Q  +L+ +M++S+++P+  T + +L AC +   ++ GR I   + + +  
Sbjct: 431 LALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK-HSI 489

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           E +Q    ++ ++    G    AR+L +  P + D   W  ++++   +++   A L   
Sbjct: 490 EINQPLRTALADMYMNCGDEATARDLFEGCPDR-DLISWNAMIASYVKNNQAHKALLLFH 548

Query: 631 KLISMEPENAGNYVLLSNIYAA 652
           ++IS   E   N V + N+ ++
Sbjct: 549 RMIS---EAEPNSVTIINVLSS 567



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 179/357 (50%), Gaps = 5/357 (1%)

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + KD K  WNS+I         +     +  M   G   ++ TL  +L++     ++E G
Sbjct: 14  QIKDPK-HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 72

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H     +D   D+ V TA++  Y K   +EDA+ +FD MSD+D V+WN M+  Y   
Sbjct: 73  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 132

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSV 371
           G  +E++ L+  M R   R +  T +A + +      +  G+ +H   LRNG  D    V
Sbjct: 133 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHV 192

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +LI  Y    D+     +FD +  + +VSW++MI GY       +AL LF +M ++ V
Sbjct: 193 ATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 251

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D VT++  + AC  +G+L+  K +H  ++K        +  A+   Y+  G +E + +
Sbjct: 252 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQ 311

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           LF  E + ++D   WNSMISAYA  G   +   L+ +M+   V+ D  T + +L+ C
Sbjct: 312 LF--ESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 395 VKTKTVVSWSSMIK--GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           ++ K    W+S+IK    + +DQ++  L  +++M+  GV  +  T+  +L AC    A+E
Sbjct: 13  IQIKDPKHWNSVIKHQANLKNDQAI--LSAYTQMESLGVLPNNTTLPLVLKACAAQNAVE 70

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +H       L     V TA+   Y KCG +E A  +FD   +  +D++ WN+M+  
Sbjct: 71  RGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFD--AMSDRDVVLWNAMVYG 128

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           Y   G + +   L  +M + ++RP+  T + LL AC  A  +  GR
Sbjct: 129 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 174


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/669 (32%), Positives = 370/669 (55%), Gaps = 14/669 (2%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +     H+N + ++ +I  +   G +S ++ +F+++     + +  ++   ++   +
Sbjct: 67  ARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHF 126

Query: 113 EKTLLVYKQMALQS--MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS--FDDV 168
           ++   +++QM   S    P   T+  ++  C+  +   +  ++HA  VKLGFD+  F  V
Sbjct: 127 DEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTV 186

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRME 227
            + L++ Y  C+    +   ++  +  +  S  +N+LI+   ++G   +S  LF  MR  
Sbjct: 187 SNVLLKSY--CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G +    T   +L++ V L    LG+ +H ++V + F +D SV   +L  YSK   + + 
Sbjct: 245 GHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           +MLFD+M + D V +N++IS+Y Q+   + SL     M   GF    F     +S  + +
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            +++ G+Q+H   L   +D  + V NSL+DMY +CE    A  IF S+  +T VSW+++I
Sbjct: 365 SSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALI 424

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GYV        L+LF++M+   +  D  T   +L A  +  +L   K LH + ++ G  
Sbjct: 425 SGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-- 482

Query: 468 SLSSV--NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           +L +V   + +   YAKCG I+ A ++F+E  +  ++ ++WN++ISA+A +GD       
Sbjct: 483 NLENVFSGSGLVDMYAKCGSIKDAVQVFEE--MPDRNAVSWNALISAHADNGDGEAAIGA 540

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M +S ++PD ++ LG+LTAC + G VE+G   F+ M   YG  P ++HYA M++LLG
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP-ENAGNYV 644
           R G   EA +L+ +MPF+PD  +W  +L+AC++H    LAE  AEKL SME   +A  YV
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
            +SNIYAAAG+W  V  ++  +R+RG+KK P  SW+E+   +H F + DQ+HP  D I  
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720

Query: 705 ILGILELEI 713
            +  L  EI
Sbjct: 721 KINELTAEI 729



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 197/408 (48%), Gaps = 21/408 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+HA  +   G  ++  + + ++D Y+    +  ++ +F+ +   + + Y  ++ + S+
Sbjct: 270 QQLHALSVTT-GFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
             +YE +L  +++M  Q M      +PF  ++   + L     G ++H Q +    DS  
Sbjct: 329 ADQYEASLHFFREM--QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSIL 386

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            VG++LV+ Y KC+  FE E  +I   FK L  R    W +LIS  VQ G      +LF 
Sbjct: 387 HVGNSLVDMYAKCE-MFE-EAELI---FKSLPQRTTVSWTALISGYVQKGLHGAGLKLFT 441

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR      D  T   +L+++    SL LG+ +H   + S   +++   + L+ MY+K  
Sbjct: 442 KMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCG 501

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           S++DA  +F++M D++ V WN +ISA+  +G  + ++     M+ SG + D  + +  ++
Sbjct: 502 SIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLT 561

Query: 343 SISTMKNIEWGKQ-MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-V 400
           + S    +E G +   A     G   +   +  ++D+         A K+ D +  +   
Sbjct: 562 ACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDE 621

Query: 401 VSWSSMIKGYVTH-DQSL---EALRLFSEMKLEGVEVDFVTIINILPA 444
           + WSS++     H +QSL    A +LFS  KL      +V++ NI  A
Sbjct: 622 IMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAA-YVSMSNIYAA 668


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/660 (30%), Positives = 352/660 (53%), Gaps = 8/660 (1%)

Query: 37  SLLNLCENPQH---LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C    H     Q+H + + L+GL    +  S+L+++Y + G L  ++ V   +  
Sbjct: 156 SVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYV-GSSLVEAYTSCGELDAAETVLLGLPE 214

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  +L   ++ G+Y + +++ +++       ++ T P V++ C  L     G+ +
Sbjct: 215 RSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSV 274

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA V+K G ++ + +   LVE Y +C    E  +  I+    D+    +++IS   ++  
Sbjct: 275 HASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDV-VHCSAMISCFDRHDM 333

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           + ++ +LF  M   G + +    + +           L R VH   V S F     V  A
Sbjct: 334 AWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDA 393

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           +L+MY K+ +++DA + FD + + D   WN ++SA+Y     ++ L +   M   GF A+
Sbjct: 394 ILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSAN 453

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            +T ++ +   +++ N+ +G Q+HA +L++G      V   L+DMY +      A  +F+
Sbjct: 454 KYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFE 513

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +K +   SW+ ++ GY   +++ + +  F  M  E +     T+   L  C ++ +L  
Sbjct: 514 QLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGS 573

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              LH +++K G NS S V+ A+   Y KCG I  A  LF E   +++D + WN++I  Y
Sbjct: 574 GLQLHSWAIKSGWNS-SVVSGALVDMYVKCGNIADAEMLFHES--ETRDQVAWNTIICGY 630

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           ++HG   +    + QM     RPD ITF+G+L+AC +AGL+ EGR  FK +   YG  P+
Sbjct: 631 SQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPT 690

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHYA MV++L +AG + EA  L+  MP  PD+ +W  +L AC++H   E+AE  AE+L 
Sbjct: 691 MEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLF 750

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP +A + +LLSNIYA  G+W+ V ++R  L D G+KK PGCSWIEI   +H F + D
Sbjct: 751 ELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLSQD 810



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/575 (23%), Positives = 276/575 (48%), Gaps = 15/575 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++HAR ++   LH +  L  +L++ Y   G L  +++VF+ +   + + +  ++   + 
Sbjct: 70  QELHAR-LLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTA 128

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD- 167
            G+ ++ L ++ +M  + + P   T   V+++CS         ++H QVVKL  +  DD 
Sbjct: 129 AGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKL--NGLDDP 186

Query: 168 -VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            VG +LVE Y  C G  +  + ++    +     WN+L++   ++G   +   + + +  
Sbjct: 187 YVGSSLVEAYTSC-GELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVA 245

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G E    TL  +L+  +EL   + G+ VH   +      D  +N+ L+ MYS+  S E+
Sbjct: 246 SGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEE 305

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSI 344
           A  +F ++ + D V  + MIS + +     E+L+L + M   G + +  +F  IA V+S 
Sbjct: 306 AYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASR 365

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           +   N+   + +HA ++++G      V +++++MY +   +  A   FD +      SW+
Sbjct: 366 TGDANL--CRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWN 423

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +++  + +     + LR+F +M  EG   +  T +++L  C ++  L     +H   +K 
Sbjct: 424 TILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKS 483

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           GL + + V+  +   YA+ GC   A  +F  E++  +D  +W  ++S YAK  +  +  +
Sbjct: 484 GLQNDTDVSRMLVDMYAQSGCFTSACLVF--EQLKERDAFSWTVIMSGYAKTEEAEKVVE 541

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
            +  M + ++RP   T    L+ C +   +  G  +     +S G+  S     ++V++ 
Sbjct: 542 YFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKS-GWNSSVVS-GALVDMY 599

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            + G++ +A  L  +   + D   W  ++     H
Sbjct: 600 VKCGNIADAEMLFHESETR-DQVAWNTIICGYSQH 633



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 229/502 (45%), Gaps = 8/502 (1%)

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           ++ C+       G+++HA++++        + D+L+  Y KC    +  +       +D+
Sbjct: 57  LQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDI 116

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
            + W ++IS     G S+++ ++F  M  EG   +  TL ++L++       +    VH 
Sbjct: 117 VA-WTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHG 175

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
             V  +   D  V ++L+  Y+    L+ A+ +   + ++  V WN +++ Y + G  + 
Sbjct: 176 QVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRR 235

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
            + ++  +V SG     +T    +     +   ++G+ +HA+V++ G +    +++ L++
Sbjct: 236 VMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVE 295

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY  C     A ++F  +    VV  S+MI  +  HD + EAL LF +M   GV+ +   
Sbjct: 296 MYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYI 355

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
            + I       G     + +H Y +K G   L  V  AI   Y K G ++ A   FD   
Sbjct: 356 FVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFD--L 413

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           I   D  +WN+++SA+    +  Q  +++ QM       +  T++ +L  C +   +  G
Sbjct: 414 IHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFG 473

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
             +   + +S G +   +    +V++  ++G    A  LV +   + DA  W  ++S   
Sbjct: 474 TQVHACILKS-GLQNDTDVSRMLVDMYAQSGCFTSAC-LVFEQLKERDAFSWTVIMSG-- 529

Query: 618 MHSETELAELTAEKLISMEPEN 639
            +++TE AE   E   SM  EN
Sbjct: 530 -YAKTEEAEKVVEYFRSMLREN 550



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 198/402 (49%), Gaps = 7/402 (1%)

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           ++L  G+ +H   + S    D  +  +LL+MY K   L DA+ +FD M  +D V W  MI
Sbjct: 64  RTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMI 123

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGS 365
           SA+  +G   ++L++   M + G   + FT  + + + S   + ++  Q+H  V++ NG 
Sbjct: 124 SAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGL 183

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D    V +SL++ Y  C +L+ A  +   +  ++ VSW++++ GY  H      + +  +
Sbjct: 184 D-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEK 242

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           +   G E+   T+  +L  C+ +G  ++ + +H   +K GL + + +N+ +   Y++C  
Sbjct: 243 LVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLS 302

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
            E A E+F   +ID  D++  ++MIS + +H    +   L+ +M    V+P+   F+G+ 
Sbjct: 303 AEEAYEVF--IRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIA 360

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
                 G     R +   + +S G+   +    +++N+  + G + +A  +  D+  +PD
Sbjct: 361 GVASRTGDANLCRSVHAYIVKS-GFAMLKGVGDAILNMYVKVGAVQDA-TVTFDLIHEPD 418

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
              W  +LSA    S  E   L   K ++ E  +A  Y  +S
Sbjct: 419 TFSWNTILSAFYSGSNCEQG-LRIFKQMACEGFSANKYTYVS 459



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 130/258 (50%), Gaps = 3/258 (1%)

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           AA+   +  + +  G+++HA +LR+       + +SL++MYC+C  L  AR++FD +  +
Sbjct: 55  AALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHR 114

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            +V+W++MI  +     S +AL +F+ M  EG+  +  T+ ++L AC      +    +H
Sbjct: 115 DIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVH 174

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           G  +KL       V +++  +Y  CG ++ A  +     +  +  ++WN++++ YA+HGD
Sbjct: 175 GQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVL--LGLPERSDVSWNALLNGYARHGD 232

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
           + +   +  ++  S       T   +L  C+  GL + G+ +   + +  G E      +
Sbjct: 233 YRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKR-GLETDNVLNS 291

Query: 579 SMVNLLGRAGHMDEAREL 596
            +V +  R    +EA E+
Sbjct: 292 CLVEMYSRCLSAEEAYEV 309


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/647 (31%), Positives = 359/647 (55%), Gaps = 8/647 (1%)

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           ++ + + G L+L++QVF+ I +P++  Y  +++  S  G +   + +Y+ M    + P +
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
            T+PFV+++CS L+D  +G  IHA     G  +   V  AL++ YI+C           +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSF-ELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
              +D+ + WN++++    +G    +   L  +    G   ++ TL++LL    +  +L 
Sbjct: 161 MPMRDVVA-WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 251 LGRIVH--CV-AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            G  +H  C+ A +    + + + TALL MY+K   L  A  +F  M  ++ V W+ +I 
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQMHANVLRNGSD 366
            +       E+  L   M+  G      T++A A+   +++ ++  G Q+HA + ++G  
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIH 339

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             ++  NSL+ MY +   +N A   FD +  K  +S+ +++ G V + ++ EA  +F +M
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM 399

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           +   +E D  T+++++PAC ++ AL+H K  HG  +  GL   +S+  ++   YAKCG I
Sbjct: 400 QACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKI 459

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           +++ ++FD  K+ ++D+++WN+MI+ Y  HG   +   L+  MK     PD +TF+ L+ 
Sbjct: 460 DLSRQVFD--KMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIA 517

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC ++GLV EG+  F  M   YG  P  EHY  MV+LL R G +DEA + ++ MP K D 
Sbjct: 518 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADV 577

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
           RVWG LL AC++H   +L +  +  +  + PE  GN+VLLSNI++AAG+++  A++R   
Sbjct: 578 RVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQ 637

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           + +G KK+PG SWIEI   +H F   DQSHP +  IY  L  + ++I
Sbjct: 638 KVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDI 684



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 239/527 (45%), Gaps = 24/527 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GLH +L +S+ LID Y        ++ VF  +   + + +  +L   +  G Y   +   
Sbjct: 130 GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 189

Query: 120 KQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD---VGDALVEF 175
             M     + P   T   ++   +       G  IHA  ++   +  ++   +G AL++ 
Sbjct: 190 LDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDM 249

Query: 176 YIKCDGGFENEKGMIQ--RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           Y KC       K ++   R F  +  R    W++LI   V   +  ++F LFK M +EG 
Sbjct: 250 YAKC-------KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGL 302

Query: 230 EFDSGTLI-NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            F S T + + LR    L  L +G  +H +   S    DL+ + +LLSMY+K   + +A 
Sbjct: 303 CFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEAT 362

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           M FD+++ KD + +  ++S   Q+G  +E+  +   M       D+ T ++ + + S + 
Sbjct: 363 MFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLA 422

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            ++ GK  H +V+  G   + S+ NSLIDMY +C  ++ +R++FD +  + VVSW++MI 
Sbjct: 423 ALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA 482

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLN 467
           GY  H    EA  LF  MK +G   D VT I ++ AC + G +   K +    + K G+ 
Sbjct: 483 GYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL 542

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG--DWSQCFKL 525
                   +    A+ G ++ A +      + + D+  W +++ A   H   D  +    
Sbjct: 543 PRMEHYICMVDLLARGGLLDEAYQFIQSMPLKA-DVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII--FKEMKESYGY 570
             Q    +   + +    + +A        E RII   K  K+S GY
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGY 648



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 30  MTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           ++AT   S L +C +   L    Q+HA  I   G+H +L  S++L+  YA  GL++ +  
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHA-LIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
            F+ I   +++ YG +L    + G+ E+  LV+K+M   +M P   T   +I +CS L  
Sbjct: 364 FFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAA 423

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WN 202
              G+  H  V+  G      + ++L++ Y KC      +  + ++ F  + +R    WN
Sbjct: 424 LQHGKCSHGSVIIRGLALETSICNSLIDMYAKC-----GKIDLSRQVFDKMPARDVVSWN 478

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           ++I+    +G  +++  LF  M+ +G   D  T I L+
Sbjct: 479 TMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLI 516



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 37  SLLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           SL+  C +   LQ     +  +I+ GL     + ++LID YA  G + LS+QVF+ + + 
Sbjct: 413 SLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR 472

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           + + + T++      G  ++   ++  M  Q   P + T+  +I +CS
Sbjct: 473 DVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS 520


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 240/755 (31%), Positives = 374/755 (49%), Gaps = 86/755 (11%)

Query: 33  THSFSLLNLCENPQHLQQIHARYII--------------LHGLHQNLILS-----SNLID 73
           +H  SLL  C++   + QIH + I               L  L     +S     + ++ 
Sbjct: 38  SHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVA 97

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           SY   G    +  V   +T   ++ +  +++   K G  +  + V  +M      P   T
Sbjct: 98  SYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFT 157

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI--- 190
            P V+++C  L  +  G   H  +   GF+S   + +ALV  Y +C G  E E  MI   
Sbjct: 158 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-GSLE-EASMIFDE 215

Query: 191 --QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM------EGAEFDSGTLINLLRS 242
             QR   D+ S WNS++S  V++  +  + +LF  M +           D  +++N+L +
Sbjct: 216 ITQRGIDDVIS-WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 274

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
              LK++   + VH  A+ +    D+ V  AL+  Y+K   +E+A  +F+ M  KD V W
Sbjct: 275 CGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 334

Query: 303 NIMISAYYQSG----------------FP-------------------KESLELLMCMVR 327
           N M++ Y QSG                 P                    E+L L   M+ 
Sbjct: 335 NAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIF 394

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN----------GSDYQVSVHNSLID 377
           SG   +  T I+ +S+ +++     G ++HA  L+N          G D  + V+N+LID
Sbjct: 395 SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 454

Query: 378 MYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE--GVEV 433
           MY +C     AR IFD +  + + VV+W+ MI G+  +  S +AL+LF EM  E  GV  
Sbjct: 455 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 514

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--VNTAIFISYAKCGCIEMAGE 491
           +  TI  IL AC ++ A+   K +H Y ++      S+  V   +   Y+KCG ++ A  
Sbjct: 515 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 574

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FD   +  K  I+W SM++ Y  HG  S+   ++ +M+++   PD ITFL +L AC + 
Sbjct: 575 VFDS--MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 632

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G+V++G   F  M   YG  P  EHYA  ++LL R+G +D+A   VKDMP +P A VW  
Sbjct: 633 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 692

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LLSAC++HS  ELAE    KL+ M  EN G+Y L+SNIYA AG+W  VA++R  ++  G+
Sbjct: 693 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 752

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           KK PGCSW++  K    F+  D+SHP +  IY +L
Sbjct: 753 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALL 787



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 103/240 (42%), Gaps = 42/240 (17%)

Query: 26  TRPHMTATHSFSLLNLCENPQHL------QQIHARYIILHGLHQN--LILSSNLIDSYAN 77
           + P+  A +++++  +     HL      +QIHA Y++ H  +++    +++ LID Y+ 
Sbjct: 507 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA-YVLRHHRYESSAYFVANCLIDMYSK 565

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
            G +  ++ VF+S++  +++ + +++      G   + L ++ +M      P + T+  V
Sbjct: 566 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 625

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           + +CS           H  +V  G   FD +                 + G+  R     
Sbjct: 626 LYACS-----------HCGMVDQGLSYFDSM---------------SADYGLTPR----- 654

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR--STVELKSLELGRIV 255
              +   I L  ++G+ +K++   K M ME        L++  R  S VEL    L ++V
Sbjct: 655 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 714


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 227/697 (32%), Positives = 385/697 (55%), Gaps = 77/697 (11%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANL-GLLSLSQQVFNSITSPN 95
           S+ +   N  HL+Q+HA+ II + LH +    + LI+    L      +  +FNS  +PN
Sbjct: 6   SIASRVGNFNHLRQLHAQ-IIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPN 64

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             ++ ++L+  S   ++ K +L+Y+QM    + P    YP +I+S         G   HA
Sbjct: 65  VFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHA 119

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI------QRKFKDLKSRWNSLISLAV 209
            V+KLG  S   V +A+++ Y +  G   + + +       +RK  D    WN+++S   
Sbjct: 120 HVLKLGHGSDAFVRNAVIDMYARL-GPIGHARKVFDEIPDYERKVAD----WNAMVSGYW 174

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           +     ++  LF +M                                         +++ 
Sbjct: 175 KWESEGQAQWLFDVMPE---------------------------------------RNVI 195

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
             TA+++ Y+K+  LE A+  FD M ++  V WN M+S Y Q+G  +E+L L   MV +G
Sbjct: 196 TWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAG 255

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D  T +  +S+ S+  +      +   + +        V  +L+DMY +  DL+ AR
Sbjct: 256 IEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSAR 315

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNI 448
           K+F+++  + VV+W+SMI GY  + QS  A+ LF EM   + +  D VT+++++ AC ++
Sbjct: 316 KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHL 375

Query: 449 GALEH----VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           GALE     V++L    +KL   S+S  N  IF+ Y++CG +E A  +F E  + ++D++
Sbjct: 376 GALELGNWVVRFLTENQIKL---SISGHNAMIFM-YSRCGSMEDAKRVFQE--MATRDVV 429

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           ++N++IS +A HG   +   L + MK+  + PD +TF+G+LTAC +AGL+EEGR +F+ +
Sbjct: 430 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 489

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           K+     P+ +HYA MV+LLGR G +++A+  ++ MP +P A V+G LL+A ++H + EL
Sbjct: 490 KD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVEL 544

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            EL A KL  +EP+N+GN++LLSNIYA+AG+W  V ++R  ++  G+KKT G SW+E G 
Sbjct: 545 GELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGG 604

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEIMEGRRESS 721
            +H+F  AD+SH ++D IY +L    +E+ +  RE+ 
Sbjct: 605 KLHKFIVADRSHERSDDIYQLL----IELRKKMREAG 637


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 217/662 (32%), Positives = 362/662 (54%), Gaps = 7/662 (1%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +++  G  +++ + + LID Y   G +  ++ VF+++   +++ + T++    K G    
Sbjct: 173 FLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYV 232

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +L ++ Q+   ++ P       V+ +CS L     G++IHA +++ G +    + + L++
Sbjct: 233 SLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLID 292

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+KC       K       K++ S W +L+S   QN   +++ ELF  M   G + D  
Sbjct: 293 SYVKCGRVIAAHKLFNGMPNKNIIS-WTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMY 351

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
              ++L S   L +L  G  VH   + ++   D  V  +L+ MY+K   L DA+ +FD  
Sbjct: 352 ACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIF 411

Query: 295 SDKDRVVWNIMISAYYQSGFP---KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           +  D V++N MI  Y + G      E+L +   M     R  L T ++ + + +++ ++ 
Sbjct: 412 AAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
             KQ+H  + + G +  +   ++LID+Y  C  L  +R +FD +K K +V W+SM  GYV
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
              ++ EAL LF E++L     D  T  N++ A  N+ +++  +  H   +K GL     
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +  A+   YAKCG  E A + FD     S+D++ WNS+IS+YA HG+  +  ++  +M  
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAA--SRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
             + P+ ITF+G+L+AC +AGLVE+G   F E+   +G EP  EHY  MV+LLGRAG ++
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQF-ELMLRFGIEPETEHYVCMVSLLGRAGRLN 708

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           +AREL++ MP KP A VW  LLS C      ELAE  AE  I  +P+++G++ +LSNIYA
Sbjct: 709 KARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYA 768

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           + G W    K+R  ++  G+ K PG SWI I K VH F + D+SH +A+ IY +L  L +
Sbjct: 769 SKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLV 828

Query: 712 EI 713
           +I
Sbjct: 829 QI 830



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 168/618 (27%), Positives = 307/618 (49%), Gaps = 25/618 (4%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           H Q +    II+ GL  +  LS+ LI+ Y+  G +  +++VF  +   N + + T++   
Sbjct: 61  HYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSAC 120

Query: 107 SKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGE------KIHAQVVK 159
           +  G YE++L+V+ +    +   P E      I++CS L     G       ++ + +VK
Sbjct: 121 NHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGL----DGRGRWMVFQLQSFLVK 176

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
            GFD    VG  L++FY+K DG  +  + +     +     W ++IS  V+ G+S  S +
Sbjct: 177 SGFDRDVYVGTLLIDFYLK-DGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQ 235

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  +  +    D   L  +L +   L  LE G+ +H   +      D S+   L+  Y 
Sbjct: 236 LFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYV 295

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K   +  A  LF+ M +K+ + W  ++S Y Q+   KE++EL   M + G + D++   +
Sbjct: 296 KCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSS 355

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            ++S +++  + +G Q+HA  ++        V NSLIDMY +C+ L  ARK+FD      
Sbjct: 356 ILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAAD 415

Query: 400 VVSWSSMIKGYV---THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
           VV +++MI+GY    T  +  EAL +F +M+   +    +T +++L A  ++ +L   K 
Sbjct: 416 VVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQ 475

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +HG   K GLN      +A+   Y+ C C++ +  +FDE K+  KD++ WNSM + Y + 
Sbjct: 476 IHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKV--KDLVIWNSMFAGYVQQ 533

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
            +  +   L+ +++ S  RPD  TF  ++TA  N   V+ G+    ++ +  G E +   
Sbjct: 534 SENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR-GLECNPYI 592

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS-- 634
             +++++  + G  ++A +   D     D   W  ++S+   H E + A    EK++S  
Sbjct: 593 TNALLDMYAKCGSPEDAHKAF-DSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG 651

Query: 635 MEPENAGNYVLLSNIYAA 652
           +EP    NY+    + +A
Sbjct: 652 IEP----NYITFVGVLSA 665



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 245/481 (50%), Gaps = 22/481 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA +I+ +GL  +  L + LIDSY   G +  + ++FN + + N + + T+L    +
Sbjct: 269 KQIHA-HILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQ 327

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFD 166
              +++ + ++  M+   + P       ++ SC+ L     G ++HA  +K  LG DS+ 
Sbjct: 328 NALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSY- 386

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE--------KSF 218
            V ++L++ Y KCD   +       RK  D+ +  + ++  A+  G S         ++ 
Sbjct: 387 -VTNSLIDMYAKCDCLTD------ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEAL 439

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
            +F+ MR         T ++LLR++  L SL L + +H +        D+   +AL+ +Y
Sbjct: 440 NIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVY 499

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           S    L+D++++FD+M  KD V+WN M + Y Q    +E+L L + +  S  R D FT  
Sbjct: 500 SNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFA 559

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             V++   + +++ G++ H  +L+ G +    + N+L+DMY +C     A K FDS  ++
Sbjct: 560 NMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASR 619

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VV W+S+I  Y  H +  +AL++  +M  EG+E +++T + +L AC + G +E      
Sbjct: 620 DVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQF 679

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHG 517
              ++ G+   +     +     + G +  A EL   EK+ +K   I W S++S  AK G
Sbjct: 680 ELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELI--EKMPTKPAAIVWRSLLSGCAKAG 737

Query: 518 D 518
           +
Sbjct: 738 N 738



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 257/535 (48%), Gaps = 22/535 (4%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H Q++  G +    + + L+  Y +  G     K   +   ++L S W++++S    +G
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVS-WSTMVSACNHHG 124

Query: 213 KSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRI----VHCVAVVSDFCKD 267
             E+S  +F +  R      +   L + +++   L     GR     +    V S F +D
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGR--GRWMVFQLQSFLVKSGFDRD 182

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V T L+  Y K  +++ A+++FD + +K  V W  MIS   + G    SL+L   ++ 
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D +     +S+ S +  +E GKQ+HA++LR G +   S+ N LID Y +C  +  
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIA 302

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A K+F+ +  K ++SW++++ GY  +    EA+ LF+ M   G++ D     +IL +C +
Sbjct: 303 AHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCAS 362

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL     +H Y++K  L + S V  ++   YAKC C+  A ++FD     + D++ +N
Sbjct: 363 LHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD--IFAAADVVLFN 420

Query: 508 SMISAYAKHG-DWS--QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +MI  Y++ G  W   +   ++  M+   +RP L+TF+ LL A  +   +   + I   M
Sbjct: 421 AMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            + YG        ++++++      + ++R +  +M  K D  +W  + +     SE E 
Sbjct: 481 FK-YGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFAGYVQQSENEE 538

Query: 625 A-ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF---LRDRGLKKTP 675
           A  L  E  +S E  +   +   +N+  AAG    V   + F   L  RGL+  P
Sbjct: 539 ALNLFLELQLSRERPDEFTF---ANMVTAAGNLASVQLGQEFHCQLLKRGLECNP 590



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 170/317 (53%), Gaps = 13/317 (4%)

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           LR++ +L  L    +VH   +V     D  ++  L+++YS+   +  A+ +F+KM +++ 
Sbjct: 53  LRASDDL--LHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNL 110

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK----- 354
           V W+ M+SA    G  +ESL + +   R+  R D        S I     ++ G+     
Sbjct: 111 VSWSTMVSACNHHGIYEESLVVFLEFWRT--RKDSPNEYILSSFIQACSGLD-GRGRWMV 167

Query: 355 -QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            Q+ + ++++G D  V V   LID Y +  +++ AR +FD++  K+ V+W++MI G V  
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
            +S  +L+LF ++  + V  D   +  +L AC  +  LE  K +H + ++ GL   +S+ 
Sbjct: 228 GRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLM 287

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
             +  SY KCG +  A +LF+   + +K+II+W +++S Y ++    +  +L+T M +  
Sbjct: 288 NVLIDSYVKCGRVIAAHKLFN--GMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFG 345

Query: 534 VRPDLITFLGLLTACVN 550
           ++PD+     +LT+C +
Sbjct: 346 LKPDMYACSSILTSCAS 362


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 316/559 (56%), Gaps = 10/559 (1%)

Query: 151 EKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISL 207
           ++IHAQ+++  L  D F      +V F    D G      ++  +  +  +   NS+I  
Sbjct: 57  KQIHAQMLRTCLFVDPFS--ASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRG 114

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
                   ++   ++LM ++G + D  T  +L +S   L     G+ +HC +    F  D
Sbjct: 115 YTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASD 171

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
             +   L++MYS    L  A+ +FDKM +K  V W  MI AY Q   P E+++L   M  
Sbjct: 172 AYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEI 231

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
           +  + +  T +  +++ +  +++E  KQ+H  +   G  +   + ++L+D+YC+C     
Sbjct: 232 ASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPL 291

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           AR +F+ +  K +  W+ MI G+V      EAL LF+EM+L GV+ D VT+ ++L AC +
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +GALE  K+LH Y  K  +    ++ TA+   YAKCG IE A  +F E  +  KD++TW 
Sbjct: 352 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQE--MPEKDVMTWT 409

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           ++I   A  G   +  +L+ +M+ S+V+PD ITF+G+L AC +AGLV EG   F  M   
Sbjct: 410 ALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNK 469

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           YG +PS EHY  MV++LGRAG + EA +L+++MP  PD  V   LLSAC++H    +AE 
Sbjct: 470 YGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAER 529

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A++LI ++P+N G YVLLSNIY++   W    KMR  + +R +KK PGCS IE+G +VH
Sbjct: 530 AAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVH 589

Query: 688 EFWAADQSHPQADAIYTIL 706
           EF   D SHPQ+  IY  L
Sbjct: 590 EFVKGDVSHPQSSEIYETL 608



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 230/483 (47%), Gaps = 9/483 (1%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA--NLGLLSLSQQVFNSITSPNS 96
           L  C     L+QIHA+ ++   L  +   +S ++   A  + G L  ++ VFN I +P +
Sbjct: 47  LEKCTTMSQLKQIHAQ-MLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTT 105

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
               +I++  +      + +L Y+ M LQ + P   T+P + +SC  L +   G+++H  
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCH 162

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
             KLGF S   + + L+  Y  C G   + + +  +        W ++I    Q     +
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNC-GCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHE 221

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           + +LF+ M +   + +  TL+N+L +    + LE  + VH     +       + +AL+ 
Sbjct: 222 AIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMD 281

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           +Y K      A+ LF+KM +K+   WNIMI+ + +    +E+L L   M  SG + D  T
Sbjct: 282 VYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 341

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + + + + +  +E GK +H  + +   +  V++  +L+DMY +C  +  A ++F  + 
Sbjct: 342 MASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP 401

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVK 455
            K V++W+++I G     Q L+AL LF EM++  V+ D +T + +L AC + G + E + 
Sbjct: 402 EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIA 461

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           Y +    K G+         +     + G I  A +L     + + D      ++SA   
Sbjct: 462 YFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPM-APDYFVLVGLLSACRI 520

Query: 516 HGD 518
           HG+
Sbjct: 521 HGN 523


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 214/699 (30%), Positives = 365/699 (52%), Gaps = 56/699 (8%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L+N C N   ++Q+HA+  + HG+ +N+++++ LI  Y+    L  +  +F+ +   +S
Sbjct: 87  ALVN-CRNLTQVRQVHAQASV-HGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + +  ++   +K G+Y      ++++      P   T PFVIR+C               
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR-------------- 190

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSE 215
                     ++  ALV+ Y+KC    E+ + +  + + +DL + W  +I    + GK+ 
Sbjct: 191 -------DLKNLQMALVDMYVKCR-EIEDARFLFDKMQERDLVT-WTVMIGGYAECGKAN 241

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           +S  LF+ MR EG   D   ++ ++ +  +L ++   RI+        F  D+ + TA++
Sbjct: 242 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI 301

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K   +E A+ +FD+M +K+ + W+ MI+AY   G  +++L+L   M+ SG   D  
Sbjct: 302 DMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKI 361

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  + + +    +N+   +Q+HA    +G    + V N L+  Y     L+ A  +FD +
Sbjct: 362 TLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 396 KTKTVVSWSSMIKGYVTHDQSL----------------------------EALRLFSEMK 427
             +  VSWS M+ G+      +                            E+L LF +M+
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMR 481

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            EGV  D V ++ ++ AC  +GA+   + +  Y  +        + TA+   +AKCGC+E
Sbjct: 482 EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 541

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A E+FD  +++ K++I+W++MI+AY  HG   +   L+  M +S + P+ IT + LL A
Sbjct: 542 SAREIFD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 599

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C +AGLVEEG   F  M E Y      +HY  +V+LLGRAG +DEA +L++ M  + D  
Sbjct: 600 CSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEG 659

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           +WG  L AC+ H +  LAE  A  L+ ++P+N G+Y+LLSNIYA AG+W  VAK R  + 
Sbjct: 660 LWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMS 719

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            R LKK PG +WIE+    H+F   D +HP++  IY +L
Sbjct: 720 QRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEML 758



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 161/311 (51%), Gaps = 23/311 (7%)

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           + + V  ++L   R VH  A V    +++ V   L+  YS   +L+DA  LFD M  +D 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V W++M+  + + G           ++R G R D +T    + +   +KN++        
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM------- 197

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
                         +L+DMY +C ++  AR +FD ++ + +V+W+ MI GY    ++ E+
Sbjct: 198 --------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 243

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF +M+ EGV  D V ++ ++ AC  +GA+   + +  Y  +        + TA+   
Sbjct: 244 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 303

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCGC+E A E+FD  +++ K++I+W++MI+AY  HG   +   L+  M  S + PD I
Sbjct: 304 YAKCGCVESAREIFD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKI 361

Query: 540 TFLGLLTACVN 550
           T   LL AC+N
Sbjct: 362 TLASLLYACIN 372



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 25/285 (8%)

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +S++   +N+   +Q+HA    +G    + V N LI  Y     L+ A  +FD +  +  
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSWS M+ G+      +     F E+   G   D  T+  ++ AC               
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC--------------- 189

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
                   L ++  A+   Y KC  IE A  LFD  K+  +D++TW  MI  YA+ G  +
Sbjct: 190 ------RDLKNLQMALVDMYVKCREIEDARFLFD--KMQERDLVTWTVMIGGYAECGKAN 241

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +   L+ +M++  V PD +  + ++ AC   G + + RII  +  +   ++       +M
Sbjct: 242 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARII-DDYIQRKKFQLDVILGTAM 300

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +++  + G ++ ARE+   M  K +   W  +++A   H +   A
Sbjct: 301 IDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKA 344


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 232/732 (31%), Positives = 398/732 (54%), Gaps = 62/732 (8%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL- 80
           P+   +   T     SL N C+    L+  H   +   GL  ++   + L+     LG  
Sbjct: 22  PSLPNQSKRTKATPSSLKN-CKTIDELKMFHLS-LTKQGLDDDVSAITKLVARSCELGTR 79

Query: 81  --LSLSQQVF-NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
             LS +++VF N  +     +Y ++++  +  G  ++ +L++ +M    + P + T+PF 
Sbjct: 80  ESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFG 139

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           +  C+   D  +G +IH  ++K+ +     V ++LV FY +C      E    ++ F ++
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAEC-----GELDCARKVFDEM 194

Query: 198 KSR----WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             R    W S+I    +   ++ + +LF +++R E    +S T++ ++ +  +L+ LE G
Sbjct: 195 SERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETG 254

Query: 253 RIVHCVAVVSDFCKD--LSVN----TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
             V+      DF +D  + VN    +AL+ MY K  +++ AK LFD+    +  + N M 
Sbjct: 255 EKVY------DFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMA 308

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S Y + G  KE+L +L  M+ SG R D  + ++A+SS S ++NI WGK  H  VLRNG +
Sbjct: 309 SNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE 368

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY---------------- 410
              ++ N+LIDMY +C   + A +IFD +  KTVV+W+S++ GY                
Sbjct: 369 SWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTM 428

Query: 411 ---------------VTHDQSLEALRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHV 454
                          V  +   EA+ +F  M+  E V VD VT+++I  AC ++GAL+  
Sbjct: 429 PEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLA 488

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K+++ Y  K  +     + T +   +++CG  E A  +F+   + ++D+  W + I A A
Sbjct: 489 KWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFN--SLTNRDVSAWTAAIGAMA 546

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
             G+  +  +L+ +M +  ++PD + F+G LTAC + GLV++G+ IF  M++ +G  P  
Sbjct: 547 MAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPED 606

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
            HY  MV+LLGRAG ++EA +L+KDMP +P+  +W  LL+AC++    E+A   AEK+  
Sbjct: 607 VHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQV 666

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           + PE  G+YVLLSN+YA+AG+WN +AK+R  ++++GL+K PG S I+I    HEF + D+
Sbjct: 667 LAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDE 726

Query: 695 SHPQADAIYTIL 706
           SHP+   I  +L
Sbjct: 727 SHPEMRKIEAML 738


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 223/680 (32%), Positives = 369/680 (54%), Gaps = 14/680 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +++     +++ + + LID Y   G +  ++ VF+++   +++ + T++    K G    
Sbjct: 173 FLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYV 232

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +L ++ Q+   ++ P       V+ +CS L     G++IHA +++ G +    + + L++
Sbjct: 233 SLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLID 292

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+KC       K       K++ S W +L+S   QN   +++ ELF  M   G + D  
Sbjct: 293 SYVKCGRVRAAHKLFDGMPNKNIIS-WTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMF 351

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
              ++L S   L +LE G  VH   + ++   D  V  +L+ MY+K   L +A+ +FD  
Sbjct: 352 ACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIF 411

Query: 295 SDKDRVVWNIMISAYYQSGFPKE---SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           +  D V++N MI  Y + G   E   +L +   M     R  L T ++ + + +++ ++ 
Sbjct: 412 AADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
             KQ+H  + + G +  +   ++LI +Y  C  L  +R +FD +K K +V W+SM  GYV
Sbjct: 472 LSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYV 531

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
              ++ EAL LF E++L     D  T ++++ A  N+ +L+  +  H   +K GL     
Sbjct: 532 QQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPY 591

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +  A+   YAKCG  E A + FD     S+D++ WNS+IS+YA HG+  +  ++  +M  
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAA--SRDVVCWNSVISSYANHGEGRKALQMLEKMMC 649

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
             + P+ ITF+G+L+AC +AGLVE+G   F E+   +G EP  EHY  MV+LLGRAG ++
Sbjct: 650 EGIEPNYITFVGVLSACSHAGLVEDGLKQF-ELMLRFGIEPETEHYVCMVSLLGRAGRLN 708

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EAREL++ MP KP A VW  LLS C      ELAE  AE  I  +P+++G++ LLSNIYA
Sbjct: 709 EARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYA 768

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           + G W    K+R  ++  G+ K PG SWIEI K VH F + D+SH +A+ IY +L  L +
Sbjct: 769 SKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLLV 828

Query: 712 EIM-------EGRRESSEEL 724
           +I        +GRR   E L
Sbjct: 829 QIRGHMKLINDGRRSRCELL 848



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 170/625 (27%), Positives = 312/625 (49%), Gaps = 23/625 (3%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           L   ++P     +    II+ GL  +  LS+ L++ Y+  G +  +++VF  +   N + 
Sbjct: 53  LRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVT 112

Query: 99  YGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGE----KI 153
           + T++   +  G YE++L+V+      +   P E      I++CS L    SG     ++
Sbjct: 113 WSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQL 170

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
            + +VK  FD    VG  L++FY+K +G  +  + +     +     W ++IS  V+ G+
Sbjct: 171 QSFLVKSRFDRDVYVGTLLIDFYLK-EGNIDYARLVFDALPEKSTVTWTTMISGCVKMGR 229

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVE-LKSLELGRIVHCVAVVSDFCKDLSVNT 272
           S  S +LF  + MEG     G +++ + S    L  LE G+ +H   +     KD S+  
Sbjct: 230 SYVSLQLFYQL-MEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMN 288

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+  Y K   +  A  LFD M +K+ + W  ++S Y Q+   KE++EL   M + G + 
Sbjct: 289 VLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKP 348

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D+F   + ++S +++  +E+G Q+HA  ++        V NSLIDMY +C+ L  ARK+F
Sbjct: 349 DMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVF 408

Query: 393 DSVKTKTVVSWSSMIKGYV---THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           D      VV +++MI+GY    T  +  +AL +F +M+   +    +T +++L A  ++ 
Sbjct: 409 DIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLT 468

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L   K +HG   K GLN      +A+   Y+ C C++ +  +FDE K+  KD++ WNSM
Sbjct: 469 SLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKV--KDLVIWNSM 526

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
            S Y +  +  +   L+ +++ S  RPD  TF+ ++TA  N   ++ G+    ++ +  G
Sbjct: 527 FSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKR-G 585

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
            E +     +++++  + G  ++A +   D     D   W  ++S+   H E   A    
Sbjct: 586 LECNPYITNALLDMYAKCGSPEDAHKAF-DSAASRDVVCWNSVISSYANHGEGRKALQML 644

Query: 630 EKLI--SMEPENAGNYVLLSNIYAA 652
           EK++   +EP    NY+    + +A
Sbjct: 645 EKMMCEGIEP----NYITFVGVLSA 665



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 244/481 (50%), Gaps = 22/481 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA +I+ +G  ++  L + LIDSY   G +  + ++F+ + + N + + T+L    +
Sbjct: 269 KQIHA-HILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQ 327

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFD 166
              +++ + ++  M    + P       ++ SC+ L     G ++HA  +K  LG DS+ 
Sbjct: 328 NSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSY- 386

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE--------KSF 218
            V ++L++ Y KCD   E       RK  D+ +  + ++  A+  G S          + 
Sbjct: 387 -VTNSLIDMYAKCDCLTE------ARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDAL 439

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
            +F  MR         T ++LLR++  L SL L + +H +        D+   +AL+++Y
Sbjct: 440 NIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVY 499

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           S    L+D++++FD+M  KD V+WN M S Y Q    +E+L L + +  S  R D FT +
Sbjct: 500 SNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFV 559

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             V++   + +++ G++ H  +L+ G +    + N+L+DMY +C     A K FDS  ++
Sbjct: 560 DMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASR 619

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VV W+S+I  Y  H +  +AL++  +M  EG+E +++T + +L AC + G +E      
Sbjct: 620 DVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQF 679

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHG 517
              ++ G+   +     +     + G +  A EL   EK+ +K   I W S++S  AK G
Sbjct: 680 ELMLRFGIEPETEHYVCMVSLLGRAGRLNEARELI--EKMPTKPAAIVWRSLLSGCAKAG 737

Query: 518 D 518
           +
Sbjct: 738 N 738



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 255/535 (47%), Gaps = 22/535 (4%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H Q++  G +    + + L+  Y +  G     K   +   ++L + W++++S    +G
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVT-WSTMVSACNHHG 124

Query: 213 KSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRI----VHCVAVVSDFCKD 267
             E+S  +F    R      +   L + +++   L     GR     +    V S F +D
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGS--GRWMVFQLQSFLVKSRFDRD 182

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V T L+  Y K  +++ A+++FD + +K  V W  MIS   + G    SL+L   ++ 
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D +     +S+ S +  +E GKQ+HA++LR G +   S+ N LID Y +C  +  
Sbjct: 243 GNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRA 302

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A K+FD +  K ++SW++++ GY  +    EA+ LF+ M   G++ D     +IL +C +
Sbjct: 303 AHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCAS 362

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + ALE    +H Y++K  L + S V  ++   YAKC C+  A ++FD    D  D++ +N
Sbjct: 363 LHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAAD--DVVLFN 420

Query: 508 SMISAYAKHG-DWS--QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +MI  Y++ G  W       ++  M+   +RP L+TF+ LL A  +   +   + I   M
Sbjct: 421 AMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            + +G        ++++ +      + ++R +  +M  K D  +W  + S     SE E 
Sbjct: 481 FK-FGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFSGYVQQSENEE 538

Query: 625 A-ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF---LRDRGLKKTP 675
           A  L  E  +S +  +   +V   ++  AAG    +   + F   L  RGL+  P
Sbjct: 539 ALNLFLELQLSRDRPDEFTFV---DMVTAAGNLASLQLGQEFHCQLLKRGLECNP 590



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 200/387 (51%), Gaps = 19/387 (4%)

Query: 223 LMRMEGAEFDSGTLINLLRS---TVELKSLE----LGRIVHCVAVVSDFCKDLSVNTALL 275
           L+    AEF S   I   R     ++L++L+       +VH   +VS    D  ++  L+
Sbjct: 27  LLEFVNAEFPSTIGIRGRREFARLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILM 86

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD-- 333
           ++YS+   +  A+ +F+KM +++ V W+ M+SA    GF +ESL + +   R+   +   
Sbjct: 87  NLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNE 146

Query: 334 --LFTAIAAVSSISTMKNIEWGK-QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             L + I A S +    +  W   Q+ + ++++  D  V V   LID Y +  +++ AR 
Sbjct: 147 YILSSFIQACSGLD--GSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARL 204

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD++  K+ V+W++MI G V   +S  +L+LF ++    V  D   +  +L AC  +  
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPF 264

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           LE  K +H + ++ G    +S+   +  SY KCG +  A +LFD   + +K+II+W +++
Sbjct: 265 LEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFD--GMPNKNIISWTTLL 322

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYG 569
           S Y ++    +  +L+T M +  ++PD+     +LT+C +   +E G  +    +K + G
Sbjct: 323 SGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLG 382

Query: 570 YEPSQEHYASMVNLLGRAGHMDEAREL 596
            +    +  S++++  +   + EAR++
Sbjct: 383 NDSYVTN--SLIDMYAKCDCLTEARKV 407


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 347/623 (55%), Gaps = 11/623 (1%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA--- 155
           + T+LK+LS+   +E+ +  + QM      P   T P  +++C  L +   GE IH    
Sbjct: 9   WNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFLK 68

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
           + V LG D +  VG +L+  Y+KC    E  +   + +  D+ + W+S++S   +NG   
Sbjct: 69  KNVTLGSDLY--VGSSLIYMYVKCGRMTEALRMFNELEKPDIVT-WSSMVSGFEKNGSPY 125

Query: 216 KSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           ++ E F+ M        D  TLI L+ +  +L +  LGR VH   +   F  DLS+  +L
Sbjct: 126 QAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSL 185

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L+ Y+K  + ++A  LF  M++KD + W+ +I+ Y Q+G   E+L +   M+  G   ++
Sbjct: 186 LNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNV 245

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T +  + + +   ++E G++ H   +R G + +V V  +L+DMY +C     A  +F  
Sbjct: 246 ATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSR 305

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEH 453
           +  K VVSW ++I G+  +  +  ++  FS M LE     D + ++ +L +C  +G L+ 
Sbjct: 306 IPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQ 365

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            +  H Y +K G +S   +  ++   Y++CG +  A ++F+E  I  KD + W S+I+ Y
Sbjct: 366 AECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNE--IALKDTVVWTSLITGY 423

Query: 514 AKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
             HG  ++  + +  M + S+V+P+ +TFL +L+AC +AGL+ EG  IF+ M   Y   P
Sbjct: 424 GIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAP 483

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           + EHYA +V+LLGR G +D A E+ K MPF P  ++ G LL AC++H   E+AE  A++L
Sbjct: 484 NLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQL 543

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +E  +AG Y+L+SN+Y   G+W  V K+R  ++ RG+KK    S IEI + VH+F A 
Sbjct: 544 FELESNHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFVAD 603

Query: 693 DQSHPQADAIYTILGILELEIME 715
           D  HP+ + +Y +L  L+L + E
Sbjct: 604 DDLHPEKEPVYGLLKELDLHMKE 626



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 218/425 (51%), Gaps = 7/425 (1%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +WN+L+    ++   E+    F  M  +  + D+ TL   L++  EL+ ++ G ++H   
Sbjct: 8   QWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFL 67

Query: 260 VVS-DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
             +     DL V ++L+ MY K   + +A  +F+++   D V W+ M+S + ++G P ++
Sbjct: 68  KKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQA 127

Query: 319 LELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +E    M   S    D  T I  VS+ + + N   G+ +H  V+R G    +S+ NSL++
Sbjct: 128 VEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLN 187

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            Y +      A  +F  +  K V+SWS++I  YV +  + EALR+F+EM  +G E +  T
Sbjct: 188 CYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVAT 247

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           ++ +L AC     LE  +  H  +++ GL +   V+TA+   Y KC   E A  +F   +
Sbjct: 248 VLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFS--R 305

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEE 556
           I  KD+++W ++IS +  +G   +  + ++ M  +++ RPD I  L +L +C   G +++
Sbjct: 306 IPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQ 365

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
               F      YG++ +    AS+V L  R G +  A ++  ++  K D  VW  L++  
Sbjct: 366 AE-CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALK-DTVVWTSLITGY 423

Query: 617 KMHSE 621
            +H +
Sbjct: 424 GIHGK 428



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 147/317 (46%), Gaps = 6/317 (1%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLI 72
           V+F R  A  +          +L++ C    N +  + +H  +++  G   +L L ++L+
Sbjct: 128 VEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHG-FVMRRGFSNDLSLVNSLL 186

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           + YA       +  +F  +   + + + T++    + G   + L V+ +M      P   
Sbjct: 187 NCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVA 246

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T   V+++C+   D   G K H   ++ G ++   V  ALV+ Y+KC    E      + 
Sbjct: 247 TVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRI 306

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLEL 251
             KD+ S W +LIS    NG + +S E F +M +E     D+  ++ +L S  EL  L+ 
Sbjct: 307 PKKDVVS-WVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQ 365

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
               H   +   F  +  +  +L+ +YS+  SL +A  +F++++ KD VVW  +I+ Y  
Sbjct: 366 AECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGI 425

Query: 312 SGFPKESLELLMCMVRS 328
            G   ++LE    MVRS
Sbjct: 426 HGKGTKALETFNHMVRS 442



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 13/224 (5%)

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY- 456
           +T+  W++++K         + +  FS+M  +  + D  T+   L AC   G L  VKY 
Sbjct: 4   RTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKAC---GELREVKYG 60

Query: 457 --LHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
             +HG+  K + L S   V +++   Y KCG +  A  +F+E  ++  DI+TW+SM+S +
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNE--LEKPDIVTWSSMVSGF 118

Query: 514 AKHGDWSQCFKLYTQMKQ-SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            K+G   Q  + + +M   SDV PD +T + L++AC        GR +   +    G+  
Sbjct: 119 EKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRR-GFSN 177

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
                 S++N   ++    EA  L K M  K D   W  ++ AC
Sbjct: 178 DLSLVNSLLNCYAKSRAFKEAVNLFKMMAEK-DVISWSTVI-AC 219



 Score = 46.2 bits (108), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHA--RYIILHGLHQNLILSSNLIDSYANLGLL 81
           N TRP   A     +L  C     L+Q      Y+I +G   N  + ++L++ Y+  G L
Sbjct: 341 NNTRP--DAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSL 398

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRS 140
             + +VFN I   +++++ +++      G+  K L  +  M   S + P E T+  ++ +
Sbjct: 399 GNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSA 458

Query: 141 CS 142
           CS
Sbjct: 459 CS 460


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 240/755 (31%), Positives = 374/755 (49%), Gaps = 86/755 (11%)

Query: 33  THSFSLLNLCENPQHLQQIHARYII--------------LHGLHQNLILS-----SNLID 73
           +H  SLL  C++   + QIH + I               L  L     +S     + ++ 
Sbjct: 45  SHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVA 104

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           SY   G    +  V   +T   ++ +  +++   K G  +  + V  +M      P   T
Sbjct: 105 SYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFT 164

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI--- 190
            P V+++C  L  +  G   H  +   GF+S   + +ALV  Y +C G  E E  MI   
Sbjct: 165 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-GSLE-EASMIFDE 222

Query: 191 --QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM------EGAEFDSGTLINLLRS 242
             QR   D+ S WNS++S  V++  +  + +LF  M +           D  +++N+L +
Sbjct: 223 ITQRGIDDVIS-WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 281

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
              LK++   + VH  A+ +    D+ V  AL+  Y+K   +E+A  +F+ M  KD V W
Sbjct: 282 CGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 341

Query: 303 NIMISAYYQSG----------------FP-------------------KESLELLMCMVR 327
           N M++ Y QSG                 P                    E+L L   M+ 
Sbjct: 342 NAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIF 401

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN----------GSDYQVSVHNSLID 377
           SG   +  T I+ +S+ +++     G ++HA  L+N          G D  + V+N+LID
Sbjct: 402 SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 461

Query: 378 MYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE--GVEV 433
           MY +C     AR IFD +  + + VV+W+ MI G+  +  S +AL+LF EM  E  GV  
Sbjct: 462 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 521

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--VNTAIFISYAKCGCIEMAGE 491
           +  TI  IL AC ++ A+   K +H Y ++      S+  V   +   Y+KCG ++ A  
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 581

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FD   +  K  I+W SM++ Y  HG  S+   ++ +M+++   PD ITFL +L AC + 
Sbjct: 582 VFDS--MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 639

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G+V++G   F  M   YG  P  EHYA  ++LL R+G +D+A   VKDMP +P A VW  
Sbjct: 640 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 699

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LLSAC++HS  ELAE    KL+ M  EN G+Y L+SNIYA AG+W  VA++R  ++  G+
Sbjct: 700 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 759

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           KK PGCSW++  K    F+  D+SHP +  IY +L
Sbjct: 760 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALL 794



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 103/240 (42%), Gaps = 42/240 (17%)

Query: 26  TRPHMTATHSFSLLNLCENPQHL------QQIHARYIILHGLHQN--LILSSNLIDSYAN 77
           + P+  A +++++  +     HL      +QIHA Y++ H  +++    +++ LID Y+ 
Sbjct: 514 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHA-YVLRHHRYESSAYFVANCLIDMYSK 572

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
            G +  ++ VF+S++  +++ + +++      G   + L ++ +M      P + T+  V
Sbjct: 573 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 632

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           + +CS           H  +V  G   FD +                 + G+  R     
Sbjct: 633 LYACS-----------HCGMVDQGLSYFDSM---------------SADYGLTPR----- 661

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR--STVELKSLELGRIV 255
              +   I L  ++G+ +K++   K M ME        L++  R  S VEL    L ++V
Sbjct: 662 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLV 721


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/647 (31%), Positives = 359/647 (55%), Gaps = 8/647 (1%)

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           ++ + + G L+L++QVF+ I +P++  Y  +++  S  G +   + +Y+ M    + P +
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
            T+PFV+++CS L+D  +G  IHA     G  +   V  AL++ YI+C           +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSF-ELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
              +D+ + WN++++    +G    +   L  +    G   ++ TL++LL    +  +L 
Sbjct: 161 MPMRDVVA-WNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 251 LGRIVH--CV-AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            G  +H  C+ A +    + + + TALL MY+K   L  A  +F  M  ++ V W+ +I 
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQMHANVLRNGSD 366
            +       E+  L   M+  G      T++A A+   +++ ++  G Q+HA + ++G  
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIH 339

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             ++  NSL+ MY +   +N A   FD +  K  +S+ +++ G V + ++ EA  +F +M
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM 399

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           +   +E D  T+++++PAC ++ AL+H K  HG  +  GL   +S+  ++   YAKCG I
Sbjct: 400 QACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKI 459

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           +++ ++FD  K+ ++D+++WN+MI+ Y  HG   +   L+  MK     PD +TF+ L+ 
Sbjct: 460 DLSRQVFD--KMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIA 517

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC ++GLV EG+  F  M   YG  P  EHY  MV+LL R G +DEA + ++ MP K D 
Sbjct: 518 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADV 577

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
           RVWG LL AC++H   +L +  +  +  + PE  GN+VLLSNI++AAG+++  A++R   
Sbjct: 578 RVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQ 637

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           + +G KK+PG SWIEI   +H F   DQSHP +  IY  L  + ++I
Sbjct: 638 KVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDI 684



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 239/527 (45%), Gaps = 24/527 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GLH +L +S+ LID Y        ++ VF  +   + + +  +L   +  G Y   +   
Sbjct: 130 GLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHL 189

Query: 120 KQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD---VGDALVEF 175
             M     + P   T   ++   +       G  IHA  ++   +  ++   +G AL++ 
Sbjct: 190 LDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDM 249

Query: 176 YIKCDGGFENEKGMIQ--RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           Y KC       K ++   R F  +  R    W++LI   V   +  ++F LFK M +EG 
Sbjct: 250 YAKC-------KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGL 302

Query: 230 EFDSGTLI-NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            F S T + + LR    L  L +G  +H +   S    DL+ + +LLSMY+K   + +A 
Sbjct: 303 CFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEAT 362

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           M FD+++ KD + +  ++S   Q+G  +E+  +   M       D+ T ++ + + S + 
Sbjct: 363 MFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLA 422

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            ++ GK  H +V+  G   + S+ NSLIDMY +C  ++ +R++FD +  + VVSW++MI 
Sbjct: 423 ALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA 482

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLN 467
           GY  H    EA  LF  MK +G   D VT I ++ AC + G +   K +    + K G+ 
Sbjct: 483 GYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGIL 542

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG--DWSQCFKL 525
                   +    A+ G ++ A +      + + D+  W +++ A   H   D  +    
Sbjct: 543 PRMEHYICMVDLLARGGLLDEAYQFIQSMPLKA-DVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII--FKEMKESYGY 570
             Q    +   + +    + +A        E RII   K  K+S GY
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGY 648



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 13/218 (5%)

Query: 30  MTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           ++AT   S L +C +   L    Q+HA  I   G+H +L  S++L+  YA  GL++ +  
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHA-LIAKSGIHADLTASNSLLSMYAKAGLINEATM 363

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
            F+ I   +++ YG +L    + G+ E+  LV+K+M   +M P   T   +I +CS L  
Sbjct: 364 FFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAA 423

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WN 202
              G+  H  V+  G      + ++L++ Y KC      +  + ++ F  + +R    WN
Sbjct: 424 LQHGKCSHGSVIIRGLALETSICNSLIDMYAKC-----GKIDLSRQVFDKMPARDVVSWN 478

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           ++I+    +G  +++  LF  M+ +G   D  T I L+
Sbjct: 479 TMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLI 516



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 37  SLLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           SL+  C +   LQ     +  +I+ GL     + ++LID YA  G + LS+QVF+ + + 
Sbjct: 413 SLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR 472

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           + + + T++      G  ++   ++  M  Q   P + T+  +I +CS
Sbjct: 473 DVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS 520


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 213/658 (32%), Positives = 367/658 (55%), Gaps = 12/658 (1%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           H+N + ++ +I  Y  +G LS ++ +F+++     + +  ++   +    +++   +++Q
Sbjct: 72  HKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQ 131

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS--FDDVGDALVEFYIKC 179
           M      P   T+  ++  C+  +   +  ++HA  VKLGFD+  F  V + L++ Y  C
Sbjct: 132 MCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSY--C 189

Query: 180 DGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           +    +   ++  +  D  S  +N+LI+   ++G   ++  LF  MR  G +    T   
Sbjct: 190 EVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSG 249

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L++ V L    LG+ +H ++V + F +D SV   +L  YSK   + + + LF++M + D
Sbjct: 250 VLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELD 309

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V +N++IS+Y Q+   +ESL L   M   GF    F     +S  + + +++ G+Q+H 
Sbjct: 310 FVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHC 369

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +   +D  + V NSL+DMY +CE  + A  IF S+  ++ VSW+++I GYV       
Sbjct: 370 QAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGA 429

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--NTAI 476
            L+LF++M+   +  D  T   +L A     +L   K LH + ++ G  +L +V   + +
Sbjct: 430 GLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSG--NLENVFSGSGL 487

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              YAKCG I+ A ++F+E  +  ++ ++WN++ISAYA +GD       +T+M QS ++P
Sbjct: 488 VDMYAKCGSIKDAVQVFEE--MPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQP 545

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D ++ LG+L AC + G VE+G   F+ M   YG  P ++HYA M++LLGR G   EA +L
Sbjct: 546 DSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKL 605

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP-ENAGNYVLLSNIYAAAGK 655
           + +MPF+PD  +W  +L+AC+++    LAE  AE+L SME   +A  YV +SNIYAAAGK
Sbjct: 606 MDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGK 665

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           W  V  ++  +R+RG+KK P  SW+E+   +H F + DQ+HP  D I   +  L  EI
Sbjct: 666 WENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEI 723



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 260/536 (48%), Gaps = 9/536 (1%)

Query: 37  SLLNLCEN--PQH-LQQIHARYIILHGLHQNLILS--SNLIDSYANLGLLSLSQQVFNSI 91
           +LL  C +  PQ+ + Q+HA  + L G   NL L+  + L+ SY  +  L L+  +F  I
Sbjct: 146 TLLPGCNDAVPQNAVGQVHAFAVKL-GFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEI 204

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              +S+ + T++    K G Y + + ++ +M      P++ T+  V+++   L DF  G+
Sbjct: 205 LDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQ 264

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H   V  GF     VG+ ++ FY K D   E      +    D  S +N +IS   Q 
Sbjct: 265 QLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVS-YNVVISSYSQA 323

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            + E+S  LF+ M+  G +  +     +L     L SL++GR VHC A+V+     L V 
Sbjct: 324 EQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVG 383

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            +L+ MY+K    ++A+++F  +S +  V W  +IS Y Q G     L+L   M  +  R
Sbjct: 384 NSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLR 443

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
           AD  T    + + +   ++  GKQ+HA ++R+G+   V   + L+DMY +C  +  A ++
Sbjct: 444 ADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQV 503

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +  +  VSW+++I  Y  +     A+  F++M   G++ D V+I+ +L AC + G +
Sbjct: 504 FEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFV 563

Query: 452 EH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           E   ++    S   G+         +     + G    A +L DE   +  +I+ W+S++
Sbjct: 564 EQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIM-WSSVL 622

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           +A   + + S   +   Q+   +   D   ++ +      AG  E  R + K M+E
Sbjct: 623 NACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRE 678


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 227/726 (31%), Positives = 385/726 (53%), Gaps = 64/726 (8%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SLL  C+   + +  H + I +HG  +   + S  + +Y   G  + +  +   +   +S
Sbjct: 35  SLLRQCKTLINAKLAHQQ-IFVHGFTE---MFSYAVGAYIECGASAEAVSLLQRLIPSHS 90

Query: 97  LLY--GTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
            ++    +++   K G  + TL  Y QM      P   T+PFV+++C  +     G  +H
Sbjct: 91  TVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVH 150

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM----IQRKFKDLKSRWNSLISLAVQ 210
           A V   G  S   + +++V  Y +C G  ++   M    ++RK +D+ S WNS+++  VQ
Sbjct: 151 AIVCANGLGSNVFICNSIVAMYGRC-GALDDAHQMFDEVLERKIEDIVS-WNSILAAYVQ 208

Query: 211 NGKSEKSFEL-FKLMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            G+S  +  + F++      +   D+ TL+N+L +   + +L+ G+ VH  +V +    D
Sbjct: 209 GGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDD 268

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM---------------------- 305
           + V  AL+SMY+K + + +A  +F+ +  KD V WN M                      
Sbjct: 269 VFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQE 328

Query: 306 -------------ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
                        I+ Y Q G   E+L++   M   G   ++ T  + +S  +++  + +
Sbjct: 329 EDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLY 388

Query: 353 GKQMHANVLRN-------GSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSW 403
           GKQ HA V++N         +  + V N LIDMY +C+    AR IFDS+  K K VV+W
Sbjct: 389 GKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTW 448

Query: 404 SSMIKGYVTHDQSLEALRLFSEM--KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           + MI GY  H ++ +AL+LF+++  +   ++ +  T+   L AC  +G L   + LH Y+
Sbjct: 449 TVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYA 508

Query: 462 MKLGLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           ++    S +  V   +   Y+K G I+ A  +FD  K+  +++++W S+++ Y  HG   
Sbjct: 509 LRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL--RNVVSWTSLMTGYGMHGRGE 566

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +   L+ QM++     D ITFL +L AC ++G+V++G I F +M + +G  P  EHYA M
Sbjct: 567 EALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACM 626

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGRAG ++EA EL+K+M  +P A VW  LLSA ++H+  EL E  A KL  +  EN 
Sbjct: 627 VDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAEND 686

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G+Y LLSN+YA A +W  VA++R+ ++  G++K PGCSWI+  K    F+  D+SHP+++
Sbjct: 687 GSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESE 746

Query: 701 AIYTIL 706
            IY +L
Sbjct: 747 QIYNLL 752



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 150/576 (26%), Positives = 265/576 (46%), Gaps = 74/576 (12%)

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           G Y   +L+       +   +  T P +  +R C  L   I+ +  H Q+   GF    +
Sbjct: 7   GSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTL---INAKLAHQQIFVHGFT---E 60

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR--WNSLISLAVQNGKSEKSFELFKLMR 225
           +    V  YI+C G       ++QR      +   WN+LI  +V+ G  + +   +  M+
Sbjct: 61  MFSYAVGAYIEC-GASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQ 119

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G   D  T   +L++  E+ SL  G  VH +   +    ++ +  ++++MY +  +L+
Sbjct: 120 RLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALD 179

Query: 286 DAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRS---GFRADLFTAIA 339
           DA  +FD++ ++   D V WN +++AY Q G  + +L +   M        R D  T + 
Sbjct: 180 DAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVN 239

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            + + +++  ++ GKQ+H   +RNG    V V N+L+ MY +C  +N A K+F+ +K K 
Sbjct: 240 ILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKD 299

Query: 400 VVSWSSM-----------------------------------IKGYVTHDQSLEALRLFS 424
           VVSW++M                                   I GY       EAL +F 
Sbjct: 300 VVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFR 359

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK--LGLN------SLSSVNTAI 476
           +M+L G+E + VT+ ++L  C ++GAL + K  H Y +K  L LN       L  +N  I
Sbjct: 360 QMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLI 419

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM--KQSDV 534
            + YAKC    +A  +FD  +   K+++TW  MI  YA+HG+ +   KL+ Q+  +++ +
Sbjct: 420 DM-YAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSL 478

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-----SMVNLLGRAGH 589
           +P+  T    L AC   G +  GR +      +Y      E         ++++  ++G 
Sbjct: 479 KPNAFTLSCALMACARLGELRLGRQL-----HAYALRNENESEVLYVGNCLIDMYSKSGD 533

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +D AR +  +M  + +   W  L++   MH   E A
Sbjct: 534 IDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGEEA 568


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 240/746 (32%), Positives = 392/746 (52%), Gaps = 87/746 (11%)

Query: 50  QIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVF-NSITSPNSLLYGTILKNL 106
           QIHA ++I  G     N  + S L+  YA   L  ++   F N + + N   Y  I+   
Sbjct: 124 QIHA-HLIKKGSSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQ 182

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDS 164
           ++ G Y++ LL Y +M  +   P     P  +++C  L     G  IH  VVK+G  FD 
Sbjct: 183 ARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDG 242

Query: 165 FDDVGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
              V  +LV+ Y KC    + EK    M  RK  D+   WNS+I   VQNG + ++  LF
Sbjct: 243 CVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDV--VWNSMIVGYVQNGMNVEAVGLF 300

Query: 222 KLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           + MR EG  E    +L     +   L+++E G+  H + ++  F  +  + +++++ YSK
Sbjct: 301 EKMRFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSK 360

Query: 281 LASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAI 338
           +  +E+ +++F  M+  KD V WN+MIS+Y Q G  +++LE+   M      R D  T  
Sbjct: 361 VGLIEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLS 420

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR--------- 389
           + ++  +  ++++ GK++H   +RN     ++V + ++DMY +C  ++CAR         
Sbjct: 421 SLLALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKK 480

Query: 390 -----------------------KIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRL 422
                                  K+F  ++ ++V    VSW+S+I G+  + Q +EA  +
Sbjct: 481 KDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDM 540

Query: 423 FSEMKLEGVEVDFVT-----------------------------------IINILPACVN 447
           FSEM+L GV  + +T                                   I + L AC N
Sbjct: 541 FSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTN 600

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  L + + +HGY M+  ++    + T+I   YAKCG ++ A  +F      +K++  +N
Sbjct: 601 MALLNYGRSIHGYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVFI--ICSTKELPVYN 658

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +MISAYA HG  ++   L+ ++ +  + PD ITF  +L+AC +  L++EG  +FK M   
Sbjct: 659 AMISAYASHGKSAEALALFQELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCE 718

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
              +PS++HY  +V LL   G +DEA  ++  MP  PDA + G LL+AC  + ETELA  
Sbjct: 719 LQMKPSEKHYGCLVKLLTNDGQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANY 778

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A+ L+ +EP N GNYV LSN+YAA GKW+ V+ +R F++++GLKK PGCSWIE+G+ ++
Sbjct: 779 IAKWLLKVEPNNPGNYVALSNVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEVGQELN 838

Query: 688 EFWAADQSHPQADAIYTILGILELEI 713
            F A+D+SHP+ + IY IL +L  E+
Sbjct: 839 VFIASDKSHPEKEEIYKILDLLGFEM 864



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 246/504 (48%), Gaps = 24/504 (4%)

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEK 187
             D Y  +++ C    D   G +IHA ++K G  + + + V   LV  Y KC     N  
Sbjct: 102 GPDIYGELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKC-----NLT 156

Query: 188 GMIQRKFKDLKSRWN-----SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            +    F+++    N     +++ L  +NG  +++   +  M  +G   D+  + N L++
Sbjct: 157 RVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKA 216

Query: 243 TVELKSLELGRIVH--CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR- 299
              L+ +  GR +H   V + ++F   + V T+L+ MY K   LEDA+ +FD+M ++ R 
Sbjct: 217 CGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRN 276

Query: 300 -VVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
            VVWN MI  Y Q+G   E++ L   M    G      +     S+ + ++ +E GKQ H
Sbjct: 277 DVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEGKQGH 336

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMIKGYVTHDQS 416
           A V+  G +    + +S+++ Y +   +     +F S+   K  V+W+ MI  YV     
Sbjct: 337 ALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQFGMF 396

Query: 417 LEALRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            +AL +   M+  E +  D VT+ ++L    +   ++  K LHG+ ++    S  +V + 
Sbjct: 397 EKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSG 456

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG ++ A  +F       KDI+ WN+M++A A+ G   +  KL+ QM+   V 
Sbjct: 457 VLDMYAKCGIMDCARGVFHFAG-KKKDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVP 515

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+++++  L+      G V E + +F EM+ S G  P+   + +M++ L + G   EA  
Sbjct: 516 PNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLS-GVTPNLITWTTMISGLAQNGLGYEASR 574

Query: 596 LVKDMP---FKPDARVWGPLLSAC 616
           + + M     +P++      LSAC
Sbjct: 575 VFQQMQGAGMRPNSISITSALSAC 598


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 346/616 (56%), Gaps = 4/616 (0%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           ++S++LID Y   G +  +Q+VF+ +   + + + T++    K G Y + L +  +M   
Sbjct: 234 VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRG 293

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           ++   +      +   + + D   G++I+   +++G  S   V   +V  Y KC    + 
Sbjct: 294 NVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKA 353

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            +  +  + +DL + W++ +S  V+ G   +   +F++M+ EG + D   L  L+    E
Sbjct: 354 RELFLSLEGRDLVA-WSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTE 412

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           + ++ LG+I+HC A+ +D   D+S+ T L+SMY +      A  LF++M  KD VVWN +
Sbjct: 413 ISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTL 472

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+ + + G P  +LE+   +  SG   D  T +   S+ + M +++ G  +H  + ++G 
Sbjct: 473 INGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGF 532

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           +  + V  +L+DMY +C  L    ++F   K  K  VSW+ MI GY+ +  S EA+  F 
Sbjct: 533 ESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFR 592

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            MKLE V  + VT + ILPA   +  L      H   +++G  S + +  ++   YAKCG
Sbjct: 593 RMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCG 652

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  + + F E  +++KD I+WN+M+SAYA HG       L++ M++S+VR D ++++ +
Sbjct: 653 QLRYSEKCFHE--MENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISV 710

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC ++GL++EG  IF  M E +  EPS EHYA MV+LLG AG  DE   L+  M  +P
Sbjct: 711 LSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEP 770

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           DARVWG LL+ACK+HS   L E+    L+ +EP N  ++V+LS+IYA  G+WN   + R+
Sbjct: 771 DARVWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRS 830

Query: 665 FLRDRGLKKTPGCSWI 680
            + + GLKK PG SW+
Sbjct: 831 HINNHGLKKIPGYSWV 846



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/606 (24%), Positives = 284/606 (46%), Gaps = 46/606 (7%)

Query: 10  SLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSS 69
           SL + H+    FP  Q        H   L+N C+    L QIH  ++             
Sbjct: 18  SLHTHHI----FPIQQQN---NNNHYLKLINSCKYINPLLQIHTHFL------------- 57

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
                                I +P+ +LY + +K  SKF  + K + +Y  +    + P
Sbjct: 58  --------------------QIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKP 97

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
            + T+ FV+++C+  LDF  G  I+  +V  G +    +G +L++ + K  G  +N + +
Sbjct: 98  DKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKM-GCLDNARNV 156

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
             +        WN++IS   Q+    ++ E+F  M+MEG E D  +++NL  +   L  +
Sbjct: 157 FDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDV 216

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
              + +H   V    C    V+ +L+ MY K   +  A+ +FD+M  +D V W  M++ Y
Sbjct: 217 GCCKSIHGYVVRRSICG--VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGY 274

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            ++G   E L+LL  M R   + +    + A+  ++ M+++E GK+++   L+ G    +
Sbjct: 275 VKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDI 334

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V   ++ MY +C +L  AR++F S++ + +V+WS+ +   V      E L +F  M+ E
Sbjct: 335 VVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYE 394

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           G++ D   +  ++  C  I  +   K +H Y++K  + S  S+ T +   Y +      A
Sbjct: 395 GLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYA 454

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             LF+  +I  KDI+ WN++I+ + K+GD     +++ +++ S + PD  T +GL +AC 
Sbjct: 455 MTLFNRMQI--KDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACA 512

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
               ++ G  +   +++S G+E       +++++  + G +     L        D   W
Sbjct: 513 IMDDLDLGTCLHGGIEKS-GFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSW 571

Query: 610 GPLLSA 615
             +++ 
Sbjct: 572 NVMIAG 577



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 210/429 (48%), Gaps = 14/429 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +NS I    +     K+  L+  +   G + D  T   +L++         G  ++   V
Sbjct: 67  YNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIV 126

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D+ + T+L+ M+ K+  L++A+ +FDKM  KD V WN MIS   QS  P E+LE
Sbjct: 127 FNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALE 186

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M   GF  D  + +    ++S + ++   K +H  V+R      VS  NSLIDMYC
Sbjct: 187 MFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVS--NSLIDMYC 244

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C D++ A+++FD +  +  VSW++M+ GYV +    E L+L  +M+   V+++ V ++N
Sbjct: 245 KCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVN 304

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            L     +  LE  K ++ Y++++GL S   V T I   YAKCG ++ A ELF    ++ 
Sbjct: 305 ALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELF--LSLEG 362

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +D++ W++ +SA  + G   +   ++  M+   ++PD      L++ C     +  G+I+
Sbjct: 363 RDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIM 422

Query: 561 FKEMKESYGYEPSQEHYASMVNLLG----RAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
                  Y  +   E   SMV  L     R      A  L   M  K D  VW  L++  
Sbjct: 423 -----HCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIK-DIVVWNTLINGF 476

Query: 617 KMHSETELA 625
             + +  LA
Sbjct: 477 TKYGDPHLA 485



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 157/348 (45%), Gaps = 6/348 (1%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L +I   Y I   +  ++ + + L+  Y    L + +  +FN +   + +++ T++   +
Sbjct: 418 LGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFT 477

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           K+G+    L ++ ++ L  + P   T   +  +C+ + D   G  +H  + K GF+S   
Sbjct: 478 KYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIH 537

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V  AL++ Y KC      E+  +  K    +  WN +I+  + NG S ++   F+ M++E
Sbjct: 538 VKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLE 597

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
               +  T + +L +   L  L      H   +   F     +  +L+ MY+K   L  +
Sbjct: 598 NVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYS 657

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           +  F +M +KD + WN M+SAY   G  + ++ L   M  S  R D  + I+ +S+    
Sbjct: 658 EKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHS 717

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
             I+ G  + A++       +  V  S+    C  + L CA  +FD V
Sbjct: 718 GLIQEGWDIFASMCE-----KHHVEPSMEHYACMVDLLGCA-GLFDEV 759


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/663 (31%), Positives = 366/663 (55%), Gaps = 17/663 (2%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L  N +L ++LI  Y        ++QVF+ + + N + + +++    + G     L ++ 
Sbjct: 82  LAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFS 141

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK-- 178
            M        +      +R+C+ L D  +G ++HA  +K    S   V +ALV  Y K  
Sbjct: 142 SMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNG 201

Query: 179 -CDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFD 232
             D GF     + +R K KDL S W S+I+   Q G   ++ ++F+ M +EG+    EF 
Sbjct: 202 LVDDGFM----LFERIKDKDLIS-WGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFH 256

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
            G+     R+   + S E G  +H +++     +DL V  +L  MY++  +L+ A++ F 
Sbjct: 257 FGSA---FRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFY 313

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           ++   D V WN +++AY   G   E+L L   M  SG R D  T    + +      +  
Sbjct: 314 RIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 373

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+ +H+ +++ G D  VSV NSL+ MY  C DL+ A  +F  +K + VV+W+S++     
Sbjct: 374 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQ 433

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           H+   E L+LFS +      +D +++ N+L A   +G  E VK +H Y+ K GL     +
Sbjct: 434 HNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRML 493

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
           +  +  +YAKCG ++ A  LF E   +++D+ +W+S+I  YA+ G   +   L+++M+  
Sbjct: 494 SNTLIDTYAKCGSLDDAMRLF-EIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSL 552

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            +RP+ +TF+G+LTAC   G V EG   +  M+  YG  P++EH + +V+LL RAG + E
Sbjct: 553 GIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTE 612

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A   +  MPF+PD  +W  LL+A KMH++ E+ +  AE +++++P ++  YVLL NIYAA
Sbjct: 613 AANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAA 672

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           +G WN  A+++  +R  G+KK+PG SW+++   +  F   D+SHP+++ IY +L ++ +E
Sbjct: 673 SGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAMLELIGME 732

Query: 713 IME 715
           +++
Sbjct: 733 MIK 735


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 214/624 (34%), Positives = 346/624 (55%), Gaps = 5/624 (0%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
            ++L   G  +  L++++QM    + P   T+PFV+++C+ L    + + IHA V+K  F
Sbjct: 25  FRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCF 84

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
            S   V  A V+ Y+KC    +     ++   +D+ S WN+++    Q+G  ++   L +
Sbjct: 85  QSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIAS-WNAMLLGFAQSGFLDRLSCLLR 143

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR+ G   D+ T++ L+ S + +KSL     V+   +      D+SV   L++ YSK  
Sbjct: 144 HMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCG 203

Query: 283 SLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
           +L  A+ LFD+++   R V  WN MI+AY       +++     M+  GF  D+ T +  
Sbjct: 204 NLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNL 263

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +SS    K +  G  +H++ ++ G D  V V N+LI MY +C D++ AR +F+ +  KT 
Sbjct: 264 LSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTC 323

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW+ MI  Y       EA+ LF+ M+  G + D VT++ ++  C   GALE  K++  Y
Sbjct: 324 VSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNY 383

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           S+  GL     V  A+   YAKCG    A ELF    + ++ +++W +MI+A A +GD  
Sbjct: 384 SINNGLKDNVVVCNALIDMYAKCGGFNDAKELF--YTMANRTVVSWTTMITACALNGDVK 441

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
              +L+  M +  ++P+ ITFL +L AC + GLVE G   F  M + YG  P  +HY+ M
Sbjct: 442 DALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCM 501

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGR GH+ EA E++K MPF+PD+ +W  LLSACK+H + E+ +  +E+L  +EP+ A
Sbjct: 502 VDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVA 561

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YV ++NIYA+A  W GVA +R  ++   ++K+PG S I++      F   D+ HP+  
Sbjct: 562 VPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIFTVEDRDHPETL 621

Query: 701 AIYTILGILELEIMEGRRESSEEL 724
            IY +L  L     +G    SEE+
Sbjct: 622 YIYDMLDGLTSRSKKGLLAYSEEI 645



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 224/431 (51%), Gaps = 14/431 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS     V  G ++ +  LF+ M+  G   ++ T   +L++  +L  L   +I+H   +
Sbjct: 21  WNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVL 80

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S F  ++ V TA + MY K   LEDA  +F +M  +D   WN M+  + QSGF    L+
Sbjct: 81  KSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGF----LD 136

Query: 321 LLMCMVR----SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
            L C++R    SG R D  T +  + SI  +K++     +++  +R G    VSV N+LI
Sbjct: 137 RLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLI 196

Query: 377 DMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
             Y +C +L  A  +FD + +  ++VVSW+SMI  Y   ++ ++A+  +  M   G   D
Sbjct: 197 AAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPD 256

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             TI+N+L +C+   AL H   +H + +KLG +S   V   +   Y+KCG +  A  LF+
Sbjct: 257 ISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFN 316

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
              +  K  ++W  MISAYA+ G  S+   L+  M+ +  +PDL+T L L++ C   G +
Sbjct: 317 --GMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGAL 374

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           E G+ I      + G + +     +++++  + G  ++A+EL   M  +     W  +++
Sbjct: 375 ELGKWI-DNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMIT 432

Query: 615 ACKMHSETELA 625
           AC ++ + + A
Sbjct: 433 ACALNGDVKDA 443



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 180/389 (46%), Gaps = 9/389 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLL 117
           G+H ++ +++ LI +Y+  G L  ++ +F+ I S   + + + +++   + F ++ K + 
Sbjct: 184 GVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVN 243

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
            YK M      P   T   ++ SC        G  +H+  VKLG DS   V + L+  Y 
Sbjct: 244 CYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYS 303

Query: 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           KC G   + + +           W  +IS   + G   ++  LF  M   G + D  T++
Sbjct: 304 KC-GDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVL 362

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            L+    +  +LELG+ +   ++ +    ++ V  AL+ MY+K     DAK LF  M+++
Sbjct: 363 ALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANR 422

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ-M 356
             V W  MI+A   +G  K++LEL   M+  G + +  T +A + + +    +E G +  
Sbjct: 423 TVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECF 482

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQ 415
           +    + G +  +  ++ ++D+      L  A +I  S+  +     WS+++     H +
Sbjct: 483 NMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGK 542

Query: 416 SLEALRLFSEMKLE---GVEVDFVTIINI 441
            +E  +  SE   E    V V +V + NI
Sbjct: 543 -MEMGKYVSEQLFELEPQVAVPYVEMANI 570



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           +  T+ +W+S  +  V    +  AL LF +MK  G+  +  T   +L AC  +  L + +
Sbjct: 14  RFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQ 73

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H + +K    S   V TA    Y KCG +E A  +F E  +  +DI +WN+M+  +A+
Sbjct: 74  IIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPV--RDIASWNAMLLGFAQ 131

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
            G   +   L   M+ S +RPD +T L L+
Sbjct: 132 SGFLDRLSCLLRHMRLSGIRPDAVTVLLLI 161



 Score = 45.8 bits (107), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           + TWNS        G       L+ QMKQS + P+  TF  +L AC     +   +II  
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
            + +S  ++ +     + V++  + G +++A  +  +MP + D   W  +L
Sbjct: 78  HVLKSC-FQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVR-DIASWNAML 126



 Score = 42.7 bits (99), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 32/186 (17%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y I +GL  N+++ + LID YA  G  + ++++F ++ +   + + T++   +  G+ + 
Sbjct: 383 YSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKD 442

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG----- 169
            L ++  M    M P   T+  V+++C+           H  +V+ G + F+ +      
Sbjct: 443 ALELFFMMLEMGMKPNHITFLAVLQACA-----------HGGLVERGLECFNMMTQKYGI 491

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR--------WNSLISLAVQNGK-------S 214
           +  ++ Y  C       KG ++   + +KS         W++L+S    +GK       S
Sbjct: 492 NPGIDHY-SCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVS 550

Query: 215 EKSFEL 220
           E+ FEL
Sbjct: 551 EQLFEL 556


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/628 (32%), Positives = 334/628 (53%), Gaps = 47/628 (7%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           + Y  +++ C  L +   G ++HAQ+V  G D  + +G  L+E Y +  G  E+ + M  
Sbjct: 11  EIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQ-TGCVEDARRMFD 69

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           +  +     W +++ +    G  E++ +LF LM  EG   D      + ++  ELK+  +
Sbjct: 70  KMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRV 129

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G+ V+   +   F  +  V  ++L M+ K   ++ A+  F+++  KD  +WNIM+S Y  
Sbjct: 130 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTS 189

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGSDYQVS 370
            G  K++L +   MV  G + +  T  +AVS+ + +  +  G+++H   ++    D  + 
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLL 249

Query: 371 VHNSLIDMYCECEDLNCARK---------------------------------------- 390
           V NSL+D Y +C  +  AR+                                        
Sbjct: 250 VGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHI 309

Query: 391 ---IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
              +F  + T+ VV W+S+I       +S+ AL L  EM L  VEV+ VT+++ LPAC  
Sbjct: 310 ACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSK 369

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL   K +H + ++ GL++ + +  ++   Y +CG I+ +  +FD   +  +D+++WN
Sbjct: 370 LAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD--LMPQRDLVSWN 427

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            MIS Y  HG       L+ Q +   ++P+ ITF  LL+AC ++GL+EEG   FK MK  
Sbjct: 428 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 487

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           Y  +P+ E YA MV+LL RAG  +E  E ++ MPF+P+A VWG LL AC++H   +LAE 
Sbjct: 488 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEY 547

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A  L  +EP+++GNYVL++NIY+AAG+W   AK+R  +++RG+ K PGCSWIE+ + +H
Sbjct: 548 AARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLH 607

Query: 688 EFWAADQSHPQADAIYTILGILELEIME 715
            F   D SHP  + I   +  L  +I E
Sbjct: 608 SFVVGDTSHPLMEQISAKMESLYFDIKE 635



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 231/463 (49%), Gaps = 49/463 (10%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C    +L+   Q+HA+ ++++G+     L S L++ Y   G +  ++++F+ ++ 
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQ-LVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 73

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N   +  I++     G+YE+T+ ++  M  + + P    +P V ++CS L ++  G+ +
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           +  ++ +GF+    V  ++++ +IKC       +   + +FKD+   WN ++S     G+
Sbjct: 134 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV-FMWNIMVSGYTSKGE 192

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV-VSDFCKDLSVNT 272
            +K+  +F+ M +EG + +S T+ + + +   L  L  GR +H   + V +   DL V  
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 273 ALLSMYSKLASLEDAKM------------------------------------------- 289
           +L+  Y+K  S+E A+                                            
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F ++S +D VVWN +ISA  QSG    +L+LL  M  S    +  T ++A+ + S +  
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 372

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  GK++H  ++R G D    + NSLIDMY  C  +  +R+IFD +  + +VSW+ MI  
Sbjct: 373 LRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISV 432

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           Y  H   ++A+ LF + +  G++ + +T  N+L AC + G +E
Sbjct: 433 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 475



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 85/172 (49%), Gaps = 1/172 (0%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           + ++  VF+ +++ + +++ +I+   ++ G     L + ++M L ++     T    + +
Sbjct: 307 MHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 366

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           CS L     G++IH  +++ G D+ + + ++L++ Y +C    ++ +       +DL S 
Sbjct: 367 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS- 425

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           WN +IS+   +G    +  LF+  R  G + +  T  NLL +      +E G
Sbjct: 426 WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEG 477


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 359/667 (53%), Gaps = 9/667 (1%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           ++ HG   +L L + LI+ Y  +G    ++++F+ +   N + +  ++   ++ G  E  
Sbjct: 26  VLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDA 85

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCS-CLLDFISGEKIHAQVVKLGF-DSFDDVGDALV 173
             V K+M  +   P    +   IR+C   +L    G ++H   ++ G  D+   VG+ L+
Sbjct: 86  CGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLI 145

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
             Y KC G  ++ + +           WNS+I+   QN   E + + +  MR  G    +
Sbjct: 146 NMYAKC-GDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSN 204

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
             LI+ L S   L  + LG+  H   +      D+SV+  LL++Y++ + L + + +F  
Sbjct: 205 FALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSW 264

Query: 294 MSDKDRVVWNIMISAYYQSGFP-KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           M ++D+V WN +I A   SG    E++E+ + M+R+G+  +  T I  ++++S++   + 
Sbjct: 265 MLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKL 324

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVVSWSSMIKGYV 411
             Q+HA +L+       ++ N+L+  Y +  ++    +IF  + + +  VSW+SMI GY+
Sbjct: 325 SHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYI 384

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            ++   +A+ L   M   G  +D  T   +L AC  +  LE    +H  +++  L S   
Sbjct: 385 HNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVV 444

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           + +A+   Y+KCG I+ A   F+   +  +++ +WNSMIS YA+HG      +L+T+MK 
Sbjct: 445 IGSALVDMYSKCGRIDYASRFFNLMPV--RNLYSWNSMISGYARHGHGDNALRLFTRMKL 502

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           S   PD ITF+G+L+AC + GLV+EG   FK M E YG  P  EHY+ MV+LLGRAG +D
Sbjct: 503 SGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELD 562

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNI 649
           +    +  MP KP+  +W  +L AC   +  +TEL    AE L +M+P+NA NYVLLSN+
Sbjct: 563 KIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNM 622

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA+ GKW  +A+ R  +R+  +KK  GCSW+ +   VH F A D SHP+   IY  L  L
Sbjct: 623 YASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKEL 682

Query: 710 ELEIMEG 716
           + +I + 
Sbjct: 683 DKKIRDA 689



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 212/410 (51%), Gaps = 11/410 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +Q+H  Y I  GL+   +   N LI+ YA  G +  ++ VF  +   +S+ + +++  L 
Sbjct: 122 RQVHG-YAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLD 180

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           +   +E  +  Y  M    + P+       + SC+ L   + G++ H + +KLG D    
Sbjct: 181 QNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVS 240

Query: 168 VGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKS-EKSFELFKL 223
           V + L+  Y +     E +K    M++R     +  WN++I     +G S  ++ E+F  
Sbjct: 241 VSNTLLALYAETSRLAECQKVFSWMLERD----QVSWNTVIGALADSGASVSEAIEVFLE 296

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G   +  T INLL +   L + +L   +H + +  +   D ++  ALL+ Y K   
Sbjct: 297 MMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGE 356

Query: 284 LEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           +E+ + +F +MS+ +D V WN MIS Y  +    ++++L+  M++ G R D FT    +S
Sbjct: 357 MENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLS 416

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +T+  +E G ++HA  +R   +  V + ++L+DMY +C  ++ A + F+ +  + + S
Sbjct: 417 ACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYS 476

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           W+SMI GY  H     ALRLF+ MKL G   D +T + +L AC +IG ++
Sbjct: 477 WNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVD 526



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/497 (26%), Positives = 228/497 (45%), Gaps = 21/497 (4%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           H  V+K GFDS   + + L+  Y++        K      F ++  R    W  LIS   
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARK-----LFDEMPDRNGVTWACLISGYT 77

Query: 210 QNGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
           QNG  E +  + K M  EG     F  G+ I   + ++  +    GR VH  A+ +    
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWR--RKGRQVHGYAIRTGLND 135

Query: 267 -DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
             ++V   L++MY+K   ++ A+ +F  M DKD V WN MI+   Q+   +++++    M
Sbjct: 136 AKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSM 195

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
            ++G     F  I+A+SS +++  I  G+Q H   ++ G D  VSV N+L+ +Y E   L
Sbjct: 196 RKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRL 255

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL-EALRLFSEMKLEGVEVDFVTIINILPA 444
              +K+F  +  +  VSW+++I        S+ EA+ +F EM   G   + VT IN+L  
Sbjct: 256 AECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLAT 315

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
             ++   +    +H   +K  +   +++  A+   Y K G +E   E+F     + +D +
Sbjct: 316 VSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMS-ERRDEV 374

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WNSMIS Y  +    +   L   M Q   R D  TF  +L+AC     +E G  +    
Sbjct: 375 SWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACA 434

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS--ACKMHSET 622
             +   E      +++V++  + G +D A      MP + +   W  ++S  A   H + 
Sbjct: 435 IRAC-LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHGHGDN 492

Query: 623 ELAELTAEKLISMEPEN 639
            L   T  KL    P++
Sbjct: 493 ALRLFTRMKLSGQLPDH 509


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 206/646 (31%), Positives = 346/646 (53%), Gaps = 37/646 (5%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I +YANLG L  ++++FN     NS+ + +++    K G   + L  + QM      P+
Sbjct: 74  MISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           + T   V+R+CS L    +G+ IH   +K+  ++   V   LV+ Y KC    E E    
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
               +    +W ++++   QNG+S K+ + FK MR +G E +  T  ++L +   + +  
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            GR VH   + S F  ++ V +AL+ MY+K   L  A+M+ D M   D V WN MI    
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G+ +E+L L   M     R D FT  + + S+++ KN++ G+ +H+  ++ G D   +
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKT 373

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V N+L+DMY +  +L+CA  +F+ +  K V+SW+S++ GYV +    +AL+LF +M+   
Sbjct: 374 VSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTAR 433

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V++D   +  +  AC  +  +E  + +H   +K    SL S   ++   YAKCGC+E A 
Sbjct: 434 VDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAI 493

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            + D   ++++++I+W ++I  YA++G                                 
Sbjct: 494 RVXDS--METRNVISWTAIIVGYAQNG--------------------------------- 518

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
             LVE G+  F+ M++ YG +P+ + YA M++LLGRAG ++EA  L+  M  +PDA +W 
Sbjct: 519 --LVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWK 576

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLSAC++H   EL E   + LI +EP N+  YVLLSN+++ AG+W   A +R  ++  G
Sbjct: 577 SLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMG 636

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           + + PG SWIE+   VH F + D+SHP A  IY+ +  + + I E 
Sbjct: 637 IXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEA 682



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 185/394 (46%), Gaps = 37/394 (9%)

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ-- 311
            + C+  ++ +  +L  N  LLS  SK   +++A+ LFD+M  +D+  WNIMISAY    
Sbjct: 24  FIRCIHGIAHYSSNLDSNQ-LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLG 82

Query: 312 ------------------------SGFPK-----ESLELLMCMVRSGFRADLFTAIAAVS 342
                                   SG+ K     E L     M   G +   +T  + + 
Sbjct: 83  NLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLR 142

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVV 401
           + ST+  +  GK +H   ++   +  + V   L+DMY +C+ L  A  +F S+   K  V
Sbjct: 143 ACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYV 202

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
            W++M+ GY  + +SL+A++ F EM+ +G+E +  T  +IL AC +I A    + +HG  
Sbjct: 203 QWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCI 262

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +  G      V +A+   YAKCG +  A  + D  +ID  D++ WNSMI     HG   +
Sbjct: 263 IWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEID--DVVCWNSMIVGCVTHGYMEE 320

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ +M   D+R D  T+  +L +  +   ++ G  +   +    G++  +    ++V
Sbjct: 321 ALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESV-HSLTIKTGFDACKTVSNALV 379

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++  + G++  A ++   +    D   W  L++ 
Sbjct: 380 DMYAKQGNLSCALDVFNKI-LDKDVISWTSLVTG 412



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 4/267 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   II  G   N+ + S L+D YA  G L+ ++ + +++   + + + +++     
Sbjct: 256 RQVHG-CIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVT 314

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+ L+++ +M  + +   + TYP V++S +   +   GE +H+  +K GFD+   V
Sbjct: 315 HGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTV 374

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV+ Y K  G       +  +   KD+ S W SL++  V NG  EK+ +LF  MR  
Sbjct: 375 SNALVDMYAK-QGNLSCALDVFNKILDKDVIS-WTSLVTGYVHNGFHEKALQLFCDMRTA 432

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
             + D   +  +  +  EL  +E GR VH   + S     LS   +L++MY+K   LEDA
Sbjct: 433 RVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDA 492

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGF 314
             + D M  ++ + W  +I  Y Q+G 
Sbjct: 493 IRVXDSMETRNVISWTAIIVGYAQNGL 519



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 129/260 (49%), Gaps = 3/260 (1%)

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N +I  Y    +L  ARK+F+       ++WSS++ GY  +   +E LR FS+M  +G +
Sbjct: 72  NIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQK 131

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
               T+ ++L AC  +  L   K +H Y++K+ L +   V T +   Y+KC C+  A  L
Sbjct: 132 PSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYL 191

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F     D K+ + W +M++ YA++G+  +  + + +M+   +  +  TF  +LTAC +  
Sbjct: 192 FFSLP-DRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS 250

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
               GR +   +  S G+ P+    +++V++  + G +  AR ++  M    D   W  +
Sbjct: 251 AYAFGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARMILDTMEID-DVVCWNSM 308

Query: 613 LSACKMHSETELAELTAEKL 632
           +  C  H   E A +   K+
Sbjct: 309 IVGCVTHGYMEEALVLFHKM 328


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  369 bits (947), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 222/675 (32%), Positives = 352/675 (52%), Gaps = 20/675 (2%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSY 75
           FLR   N     ++     SLLN     Q + +  A +  +I  G     ILS+ L  +Y
Sbjct: 5   FLRRAKNA----LSVKQYQSLLNHYAATQSISKTKALHCHVITGGRVSGHILST-LSVTY 59

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--T 133
           A  G ++ ++++F+ +   + L Y  +++   + G Y   + V+ +M  + +    D  T
Sbjct: 60  ALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYT 119

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           YPFV ++   L     G  IH ++++  F     V +AL+  Y+   G  E    M +  
Sbjct: 120 YPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNF-GRVE----MARNV 174

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           F  +K+R    WN++IS   +NG    +  +F  M  EG + D  T++++L     LK L
Sbjct: 175 FDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGL 234

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           E+GR VH +         + V  AL++MY K   +++A+ +F +M  +D + W  MI+ Y
Sbjct: 235 EMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGY 294

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            + G  + +LEL   M   G R +  T  + VS+      +  GK +H   +R      +
Sbjct: 295 IEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDI 354

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            +  SLI MY +C+ ++   ++F          WS++I G V ++   +AL LF  M+ E
Sbjct: 355 IIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRRE 414

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            VE +  T+ ++LPA   +  L     +H Y  K G  S     T +   Y+KCG +E A
Sbjct: 415 DVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESA 474

Query: 490 GELFD--EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            ++F+  +EK  SKD++ W ++IS Y  HGD     +++ +M +S V P+ ITF   L A
Sbjct: 475 HKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNA 534

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C ++GLVEEG  +F  M E Y       HY  +V+LLGRAG +DEA  L+  +PF+P + 
Sbjct: 535 CSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTST 594

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           +WG LL+AC  H   +L E+ A KL  +EPEN GNYVLL+NIYAA G+W  + K+R  + 
Sbjct: 595 IWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMME 654

Query: 668 DRGLKKTPGCSWIEI 682
           + GL+K PG S IEI
Sbjct: 655 NVGLRKKPGHSTIEI 669


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  369 bits (947), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 201/638 (31%), Positives = 353/638 (55%), Gaps = 20/638 (3%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G ++ +  VF++I  PNS+ +  I+   ++ G Y + L  Y++M L+ + P    +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRK 193
              I  CS   D   G+ +HA +++     FD + G AL+  Y +C      +  + ++ 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARC-----RDLELARKT 116

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLM---RMEGAEFDSGTLINLLRSTVEL 246
           F ++  +    WN+LI+   +NG    + ++++ M     EG + D+ T  + L +   +
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVV 176

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
             +  GR +    V S +  D  V  AL++MYSK  SLE A+ +FD++ ++D + WN MI
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S Y + G   ++LEL   M  +  + ++ T I  +++ + ++++E G+ +H  V  +G +
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE 296

Query: 367 YQVSVHNSLIDMYCECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
             + + N L++MY +C   L  AR++F+ ++T+ V++W+ +I  YV + Q+ +AL +F +
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+LE V  + +T+ N+L AC  +GA    K +H         +   +  ++   Y +CG 
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGS 416

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           ++    +F    I  K +++W+++I+AYA+HG      + + ++ Q  +  D +T +  L
Sbjct: 417 LDDTVGVF--AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           +AC + G+++EG   F  M   +G  P   H+  MV+LL RAG ++ A  L+ DMPF PD
Sbjct: 475 SACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPD 534

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV-LLSNIYAAAGKWNGVAKMRT 664
           A  W  LLS CK+H++T+ A   A+KL  +E E+  + V LLSN+YA AG+W+ V K R 
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN 594

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
               R  +K PGCS+IEI   VHEF A D+SHP+ + I
Sbjct: 595 ---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELI 629



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 215/382 (56%), Gaps = 13/382 (3%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K  S+ DA  +F  +   + V W ++++A+ ++G  +E+L     MV  G R D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
            + A+   S+ K+++ G+ +HA +L     ++ + +  +LI MY  C DL  ARK FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM---KLEGVEVDFVTIINILPACVNIGALE 452
             KT+V+W+++I GY  +     AL+++ +M     EG++ D +T  + L AC  +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +   ++  G  S S V  A+   Y+KCG +E A ++FD  ++ ++D+I WN+MIS 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFD--RLKNRDVIAWNTMISG 238

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YAK G  +Q  +L+ +M  +D +P+++TF+GLLTAC N   +E+GR I ++++E  GYE 
Sbjct: 239 YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED-GYES 297

Query: 573 SQEHYASMVNLLGR-AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                  ++N+  + +  ++EAR++ + M  + D   W  L+ A   + +   A+   + 
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQ---AKDALDI 353

Query: 632 LISMEPEN-AGNYVLLSNIYAA 652
              M+ EN A N + LSN+ +A
Sbjct: 354 FKQMQLENVAPNEITLSNVLSA 375



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 247/500 (49%), Gaps = 12/500 (2%)

Query: 39  LNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           + +C + + L+Q   +HA  +    L  ++IL + LI  YA    L L+++ F+ +    
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQS---MYPAEDTYPFVIRSCSCLLDFISGEK 152
            + +  ++   S+ G++   L +Y+ M  +S   M P   T+   + +C+ + D   G +
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQN 211
           I A+ V  G+ S   V +AL+  Y KC G  E+ + +  R K +D+ + WN++IS   + 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKC-GSLESARKVFDRLKNRDVIA-WNTMISGYAKQ 242

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G + ++ ELF+ M     + +  T I LL +   L+ LE GR +H       +  DL + 
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIG 302

Query: 272 TALLSMYSKL-ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             LL+MY+K  +SLE+A+ +F++M  +D + WNI+I AY Q G  K++L++   M     
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             +  T    +S+ + +     GK +HA +        V + NSL++MY  C  L+    
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVG 422

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F +++ K++VSWS++I  Y  H  S   L  F E+  EG+  D VT+++ L AC + G 
Sbjct: 423 VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGM 482

Query: 451 L-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           L E V+         GL         +    ++ G +E A  L  +      D + W S+
Sbjct: 483 LKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPF-LPDAVAWTSL 541

Query: 510 ISAYAKHGDWSQCFKLYTQM 529
           +S    H D  +  ++  ++
Sbjct: 542 LSGCKLHNDTKRAARVADKL 561


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 211/603 (34%), Positives = 324/603 (53%), Gaps = 48/603 (7%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----- 200
           D  S ++IH+ ++K G  +       L+EF   C      +       F  +  +     
Sbjct: 37  DIPSLKQIHSLIIKSGLHNTLFAQSKLIEF---CALSPSRDLSYALSLFHSIHHQPPNIF 93

Query: 201 -WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN+LI           S  LF  M   G   +S T  +L +S  + K+    + +H  A
Sbjct: 94  IWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHA 153

Query: 260 VVSDFCKDLSVNTALLSMYSKLASL-------------------------------EDAK 288
           +         V+T+L+ MYS++  L                               +DA+
Sbjct: 154 LKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDAR 213

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LFD++  KD V WN MI+ Y QSG  +E+L     M  +    +  T ++ +S+   ++
Sbjct: 214 RLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLR 273

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           ++E GK + + V   G    + + N+L+DMY +C ++  ARK+FD ++ K V+ W++MI 
Sbjct: 274 SLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIG 333

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY       EAL LF  M  E V  + VT + +LPAC ++GAL+  K++H Y  K  L  
Sbjct: 334 GYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDK-NLKG 392

Query: 469 LSSVN-----TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             +VN     T+I + YAKCGC+E+A ++F    + S+ + +WN+MIS  A +G   +  
Sbjct: 393 TGNVNNVSLWTSIIVMYAKCGCVEVAEQVF--RSMGSRSLASWNAMISGLAMNGHAERAL 450

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+ +M     +PD ITF+G+L+AC  AG VE G   F  M + YG  P  +HY  M++L
Sbjct: 451 GLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDL 510

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           L R+G  DEA+ L+ +M  +PD  +WG LL+AC++H + E  E  AE+L  +EPEN+G Y
Sbjct: 511 LARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAY 570

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLLSNIYA AG+W+ VAK+RT L D+G+KK PGC+ IEI  +VHEF   D+ HPQ++ I+
Sbjct: 571 VLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIF 630

Query: 704 TIL 706
            +L
Sbjct: 631 RML 633



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 160/611 (26%), Positives = 277/611 (45%), Gaps = 84/611 (13%)

Query: 25  QTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLS 82
           +  PH+      +LL  C +   L+QIH+  II  GLH  L   S LI+  + +    LS
Sbjct: 24  ENHPHL------NLLAKCPDIPSLKQIHS-LIIKSGLHNTLFAQSKLIEFCALSPSRDLS 76

Query: 83  LSQQVFNSI--TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
            +  +F+SI    PN  ++ T+++  S       +L ++ QM    +YP   T+P + +S
Sbjct: 77  YALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKS 136

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD-------------------- 180
           C+        +++HA  +KL       V  +L+  Y +                      
Sbjct: 137 CAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSF 196

Query: 181 ----GGFENEKGM--IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
                G+ +E  +   +R F ++ ++    WN++I+  VQ+G+ E++   F  M+     
Sbjct: 197 TALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS 256

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T++++L +   L+SLELG+ +        F K+L +  AL+ MYSK   +  A+ L
Sbjct: 257 PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKL 316

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           FD M DKD ++WN MI  Y      +E+L L   M+R     +  T +A + + +++  +
Sbjct: 317 FDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGAL 376

Query: 351 EWGKQMHANVLRN----GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           + GK +HA + +N    G+   VS+  S+I MY +C  +  A ++F S+ ++++ SW++M
Sbjct: 377 DLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAM 436

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I G   +  +  AL LF EM  EG + D +T + +L AC   G +E           LG 
Sbjct: 437 ISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVE-----------LGH 485

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
              SS+N    I                     S  +  +  MI   A+ G + +   L 
Sbjct: 486 RYFSSMNKDYGI---------------------SPKLQHYGCMIDLLARSGKFDEAKVLM 524

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLG 585
             M   ++ PD   +  LL AC   G VE G  + + + E    EP     Y  + N+  
Sbjct: 525 GNM---EMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFE---LEPENSGAYVLLSNIYA 578

Query: 586 RAGHMDEAREL 596
            AG  D+  ++
Sbjct: 579 GAGRWDDVAKI 589


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/670 (31%), Positives = 370/670 (55%), Gaps = 12/670 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q +H+ Y++  G   +    +N+++ Y     L L+Q+VF+ + + N++ + +++K   +
Sbjct: 87  QAVHS-YLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             +++    +   M        E T   ++++CS   D I GE+IH  V+K GFD    V
Sbjct: 146 DNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFV 205

Query: 169 GDALVEFYIKCDGGFE-NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           G +L+  Y K  G F+  EK      FKD++   N +I    + G   K+ E+FK +  +
Sbjct: 206 GTSLIAMYTK-SGFFDVAEKVFDSMGFKDIRC-LNFMILEYGRAGNGGKAIEVFKNLLND 263

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E    T  N++ +      +E G+ +  +A    F  + SV  A+++MY      ++A
Sbjct: 264 GFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEA 323

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM---VRSGFRADLFTAIAAVSSI 344
           + +F  MS+K+ + W  +IS Y +SG+ K++++  + +   +   F + L TAI  +   
Sbjct: 324 ERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAI--LDCC 381

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S   N+E G Q+H  V++ G    V+V  +L+D+Y +CE L  AR +FD +  K + S++
Sbjct: 382 SDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFN 441

Query: 405 SMIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++ G++      E  + LF++++L GV+ D VT   +L    N  +LE  +  H Y++K
Sbjct: 442 AILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVK 501

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G ++  SV  ++   YAKCG IE A ++F+   ++ +D I+WN++ISAYA HG   +  
Sbjct: 502 TGFDTNISVANSVISMYAKCGSIEDAHQMFN--IMNCRDSISWNALISAYALHGQAQKSL 559

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+ +MK+    PD  T L +L AC  +GL ++G  +F  M+  YG +P  EHYA M +L
Sbjct: 560 FLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADL 619

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAG++ EA +++K  PF     +W  L++ CK+H      +L ++ L+ + P  AG+Y
Sbjct: 620 LGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSY 679

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           +L+SN+YA+    +  AK+R  + D   +K  G SWIEI   VH F A+D+ HP++  IY
Sbjct: 680 ILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDNKVHHFVASDKDHPESREIY 739

Query: 704 TILGILELEI 713
           T L +L  E+
Sbjct: 740 TRLELLTDEM 749



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 251/500 (50%), Gaps = 19/500 (3%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKGM 189
           + +P +I+      DF+ G+ +H+ +VK G  S DD   G+ ++  Y+K      N   +
Sbjct: 68  NDWPELIKISIGSRDFLLGQAVHSYLVKAG--SQDDTFKGNNVLNLYVKF-----NRLDL 120

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            Q+ F  +++R    W SLI   +++   + +F +   M   G  F+  T   +L++   
Sbjct: 121 AQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSS 180

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
                LG  +HC  + S F +++ V T+L++MY+K    + A+ +FD M  KD    N M
Sbjct: 181 PDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFM 240

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I  Y ++G   +++E+   ++  GF    +T    +S+ +    +E GKQ+     + G 
Sbjct: 241 ILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGF 300

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
             + SV N++I MY        A ++F S+  K ++SW+++I GY       +A+  F  
Sbjct: 301 LSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLG 360

Query: 426 MKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +  E G+  D   +  IL  C +   LE    +HG+ MKLG     +V TA+   YAKC 
Sbjct: 361 LHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCE 420

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAK-HGDWSQCFKLYTQMKQSDVRPDLITFLG 543
            ++ A  +FD   + +K I ++N++++ + +  GD      L+ Q++ + V+PD++TF  
Sbjct: 421 KLQSARIVFDH--LSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSR 478

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL+   N   +E+GR  F       G++ +     S++++  + G +++A ++   M  +
Sbjct: 479 LLSLLANQASLEKGR-SFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCR 537

Query: 604 PDARVWGPLLSACKMHSETE 623
            D+  W  L+SA  +H + +
Sbjct: 538 -DSISWNALISAYALHGQAQ 556


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 224/686 (32%), Positives = 357/686 (52%), Gaps = 19/686 (2%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           FSL+N      HL Q HA++I L+G   +L   + L     +      ++ +F S+  P+
Sbjct: 16  FSLINKASTFPHLAQTHAQFI-LNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPD 74

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIH 154
             L+  +++  S       ++ +Y  +   + + P   TY F + +CS     +    +H
Sbjct: 75  IFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLM---LLH 131

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQN 211
           A  +  G+ S   VG ALV+ Y K        K   GM +R        WN++I+  V+N
Sbjct: 132 AHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERD----TVLWNTMINGLVKN 187

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
              + S +LF+ M  +G   DS T+  +L +  EL+ L++G  + C+A+   F     V 
Sbjct: 188 CCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVL 247

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T L+S+YSK   +  A++LF +++  D + +N MIS +  +G  + S++L   ++ SG R
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
               T +  +   S   ++     +H   +++G     +V  +   +Y +  +++ AR +
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHL 367

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD    KTVV+W++MI GY  +  +  A+ LF EM       + VTI  IL AC  +G+L
Sbjct: 368 FDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSL 427

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              K++H       L     V+TA+   YAKCG I  A +LFD   +  K+ +TWN+MI 
Sbjct: 428 SFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDS--MSEKNTVTWNTMIF 485

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            Y  HG   +  KLY +M      P  +TFL +L AC +AGLV EG  IF  M   Y  E
Sbjct: 486 GYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE 545

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P  EHYA MV++LGR+G +++A E +K MP +P   VWG LL AC +H +T++A L +E+
Sbjct: 546 PLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASER 605

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  ++P + G YVLLSNIY+    +   A +R  ++ R L K+PGC+ IE+    H F +
Sbjct: 606 LFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVS 665

Query: 692 ADQSHPQADAIYTILGILELEIMEGR 717
            D+SH  A  IY      +LE + G+
Sbjct: 666 GDRSHSHATDIYA-----KLEKLTGK 686


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/573 (34%), Positives = 335/573 (58%), Gaps = 19/573 (3%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H++++ LG      +   L+  Y  C   + +       + K++   WNSLI+  V+N  
Sbjct: 46  HSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNV-FLWNSLINGCVKNRL 104

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             ++F+LF  M       D  TL  L + + EL +L  G+ +H  ++ + F  D  V  +
Sbjct: 105 YNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANS 164

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG---FPKESLELLMCMVRSGF 330
           ++SMY K  + ++++ +FD+M+ ++   WN++I+ Y  SG   F +E+ E +  M     
Sbjct: 165 IMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEV 224

Query: 331 RADLFTAIAAVSSI-----STMKNIEWGKQMHANVLRN----GSDYQVSVHNSLIDMYCE 381
           R D +T    +SS+       M   ++G+++H  +++N    G D  V +   LIDMY  
Sbjct: 225 RPDAYT----ISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSR 280

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK-LEGVEVDFVTIIN 440
              +   R++FD +K + V SW++MI GYV +  S EAL LF +M+ ++GVE + V++++
Sbjct: 281 SNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVS 340

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +LPAC +   L   + +HG++++  LN+  S+  A+   Y+KCG ++ A  +F+++ +  
Sbjct: 341 VLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSL-C 399

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD I+W+SMIS Y  HG   +   LY +M Q+ +RPD+IT +G+L+AC  +GLV EG  I
Sbjct: 400 KDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNI 459

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           +  +   YG EP+ E  A +V++LGRAG +D A + +K +P +P   VWG L+S   +H 
Sbjct: 460 YSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHG 519

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           + E+ EL    LI +EP+N  NYV +SN+YA++ +W+ VA++R  ++D+ L+K PGCSWI
Sbjct: 520 DLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWI 579

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            I    H F+ AD++HP + +IY +L  L L +
Sbjct: 580 SINNKTHCFYVADKAHPSSTSIYNMLDDLLLTM 612



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 236/493 (47%), Gaps = 38/493 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q H+R + L GL QN  L++ LI +YA       S+ VF+S+   N  L+ +++    K
Sbjct: 43  RQSHSRILSL-GLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVK 101

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
              Y +   ++ QM    + P + T   + +  S L    SG+ IH + ++ GF S   V
Sbjct: 102 NRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVV 161

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK---SEKSFELFKLMR 225
            ++++  Y KC G F+  + +           WN LI+    +G     E+++E  K M+
Sbjct: 162 ANSIMSMYCKC-GNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQ 220

Query: 226 MEGAEFDSGTLINLLR-STVELKSLELGRIVHCVAVVSDFC----KDLSVNTALLSMYSK 280
           M+    D+ T+ +LL     ++   + GR +HC  V ++       D+ +   L+ MYS+
Sbjct: 221 MDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSR 280

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIA 339
              +   + +FD+M  ++   W  MI+ Y ++G   E+L L   M V  G   +  + ++
Sbjct: 281 SNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVS 340

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF-DSVKTK 398
            + + S+   +  G+Q+H   +R   + +VS+ N+LIDMY +C  L+ AR++F D    K
Sbjct: 341 VLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCK 400

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
             +SWSSMI GY  H +  EA+ L+ +M   G+  D +T + IL AC   G +       
Sbjct: 401 DAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNE----- 455

Query: 459 GYSMKLGLNSLSSV--NTAIFISYAKCGCI----EMAGELFDEEKIDSKDII-------T 505
                 GLN  SSV  +  I  +   C CI      AG+L  +  +D    I        
Sbjct: 456 ------GLNIYSSVINDYGIEPTLEICACIVDMLGRAGQL--DRALDFIKAIPVEPGPSV 507

Query: 506 WNSMISAYAKHGD 518
           W +++S    HGD
Sbjct: 508 WGALVSCSIIHGD 520



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 225/459 (49%), Gaps = 19/459 (4%)

Query: 230 EFD-SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           EFD S  L+  L  +V  KSL+L R  H   +     ++  + T L+  Y+       ++
Sbjct: 19  EFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSR 78

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST-M 347
           ++FD +  K+  +WN +I+   ++    E+ +L   M  S    D FT ++ +S +S+ +
Sbjct: 79  LVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFT-LSTLSKVSSEL 137

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +  GK +H   +R G      V NS++ MYC+C + + +RK+FD +  +   SW+ +I
Sbjct: 138 GALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLI 197

Query: 408 KGYVTHDQ---SLEALRLFSEMKLEGVEVDFVTIINILPAC-VNIGALEHVKYLHGYSMK 463
            GY          E      +M+++ V  D  TI ++LP C  ++G  ++ + LH Y +K
Sbjct: 198 AGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVK 257

Query: 464 ----LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
               LGL+S   +   +   Y++   + +   +FD  K   +++ +W +MI+ Y ++GD 
Sbjct: 258 NELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKC--RNVFSWTAMINGYVENGDS 315

Query: 520 SQCFKLYTQMKQSD-VRPDLITFLGLLTACVN-AGLVEEGRIIFKEMKESYGYEPSQEHY 577
            +   L+  M+  D V P+ ++ + +L AC + +GL+   +I    +++    E S  + 
Sbjct: 316 DEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCN- 374

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI--SM 635
            +++++  + G +D AR + +D     DA  W  ++S   +H + + A L  +K++   +
Sbjct: 375 -ALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGI 433

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
            P+      +LS    +     G+    + + D G++ T
Sbjct: 434 RPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPT 472


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 371/719 (51%), Gaps = 55/719 (7%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
            ++ C+    ++ IH + +    L  NL  +S+LI +Y +LG LS +  +       ++ 
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGILTLNL--TSHLISTYISLGCLSHAVSLLRRFPPSDAG 91

Query: 98  LY--GTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           +Y   +++++    G   K L  +  M   S  P   T+PFV ++C  +     G+  HA
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
                GF S   VG+ALV  Y +C    +  K   +    D+ S WNS+I    + GK +
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVS-WNSIIESYAKLGKPK 210

Query: 216 KSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            + E+F  M  E G   D  TL+N+L     + +  LG+  H  AV S+  +++ V   L
Sbjct: 211 MALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCL 270

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIM----------------------------- 305
           + MY+K   +++A  +F  M  KD V WN M                             
Sbjct: 271 VDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDV 330

Query: 306 ------ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA- 358
                 IS Y Q G   E+L +   M+ SG + +  T I+ +S  +++  +  GK++H  
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 359 ------NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGY 410
                 ++ +NG   +  V N LIDMY +C+ ++ AR +FDS+  K + VV+W+ MI GY
Sbjct: 391 AIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 411 VTHDQSLEALRLFSEMKLEGVEV--DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
             H  + +AL L SEM  E  +   +  TI   L AC ++ AL   K +H Y+++   N+
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNA 510

Query: 469 LS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           +   V+  +   YAKCG I  A  +FD   +  K+ +TW S+++ Y  HG   +   ++ 
Sbjct: 511 VPLFVSNCLIDMYAKCGDIGDARLVFDN--MMEKNEVTWTSLMTGYGMHGYGEEALGIFE 568

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M++   + D +T L +L AC ++G++++G   F  MK  +G  P  EHYA +V+LLGRA
Sbjct: 569 EMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRA 628

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++ A  L+++MP +P   VW  LLS C++H + EL E  A+K+  +   N G+Y LLS
Sbjct: 629 GRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLS 688

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           N+YA AG+W  V ++R+ +R +G+KK PGCSW+E  K    F+  D++HP A  IY +L
Sbjct: 689 NMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 367/667 (55%), Gaps = 13/667 (1%)

Query: 57  ILHGLHQNLILSSN------LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           I+HG+   + L S+      LI  Y   GL+  + +VF  +   N + + +I+   S+ G
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 111 EYEKTLLVYKQMAL--QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             +++   +++M +  +S  P   T   V+  C+   D   G  +H   VKLG +    V
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMV 241

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L++ Y KC    E +    +   K++ S WNS+I    +     ++F L + M+ E 
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS-WNSMIGGYAREEDVCRTFYLLQKMQTED 300

Query: 229 AEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           A+   D  T++N+L   +E   L+  + +H  +       +  V  A ++ Y++  +L  
Sbjct: 301 AKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCS 360

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           ++ +FD M  K    WN ++  Y Q+  P+++L+L + M  SG   D FT  + + + S 
Sbjct: 361 SERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           MK++ +G+++H   LRNG      +  SL+ +Y  C     A+ +FD ++ +++VSW+ M
Sbjct: 421 MKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVM 480

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I GY  +    EA+ LF +M  +G++   + I+ +  AC  + AL   K LH +++K  L
Sbjct: 481 IAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHL 540

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V+++I   YAK GCI ++  +FD  ++  KD+ +WN +I+ Y  HG   +  +L+
Sbjct: 541 TEDIFVSSSIIDMYAKGGCIGLSQRIFD--RLREKDVASWNVIIAGYGIHGRGKEALELF 598

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M +  ++PD  TF G+L AC +AGLVE+G   F +M   +  EP  EHY  +V++LGR
Sbjct: 599 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGR 658

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG +D+A  L+++MP  PD+R+W  LLS+C++H    L E  A KL+ +EPE   NYVL+
Sbjct: 659 AGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLI 718

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SN++A +GKW+ V ++R  ++D GL+K  GCSWIE+G  VH F   D+  P+ + +    
Sbjct: 719 SNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETW 778

Query: 707 GILELEI 713
             LE++I
Sbjct: 779 RRLEVKI 785



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 247/491 (50%), Gaps = 8/491 (1%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            + +L++ +I  Y+  G  S S+ VF+ +   N   +  I+   ++   +E  + ++ ++
Sbjct: 32  NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 123 -ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
            ++    P   T P VI++C+ LLD   G+ IH    K+   S   VG+AL+  Y KC  
Sbjct: 92  ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF--DSGTLINL 239
             E  K       ++L S WNS+I    +NG  ++SF  F+ M +    F  D  TL+ +
Sbjct: 152 VEEAVKVFEHMPERNLVS-WNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTV 210

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L      + +E G  VH +AV     ++L VN +L+ MYSK   L +A++LFDK   K+ 
Sbjct: 211 LPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNI 270

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVR--SGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           V WN MI  Y +      +  LL  M    +  +AD FT +  +        ++  K++H
Sbjct: 271 VSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELH 330

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
               R+G      V N+ I  Y  C  L  + ++FD + TKTV SW++++ GY  +    
Sbjct: 331 GYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPR 390

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +AL L+ +M   G++ D+ TI ++L AC  + +L + + +HG++++ GL     +  ++ 
Sbjct: 391 KALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL 450

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y  CG    A  LFD   ++ + +++WN MI+ Y+++G   +   L+ QM    ++P 
Sbjct: 451 SLYICCGKPFAAQVLFD--GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPY 508

Query: 538 LITFLGLLTAC 548
            I  + +  AC
Sbjct: 509 EIAIMCVCGAC 519



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 129/281 (45%), Gaps = 15/281 (5%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL  C   + L   ++IH  + + +GL  +  +  +L+  Y   G    +Q +F+ +  
Sbjct: 413 SLLLACSRMKSLHYGEEIHG-FALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 471

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  ++   S+ G  ++ + +++QM    + P E     V  +CS L     G+++
Sbjct: 472 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 531

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           H   +K        V  ++++ Y K  GG     G+ QR F  L+ +    WN +I+   
Sbjct: 532 HCFALKAHLTEDIFVSSSIIDMYAK--GGC---IGLSQRIFDRLREKDVASWNVIIAGYG 586

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDL 268
            +G+ +++ ELF+ M   G + D  T   +L +      +E G    + +  + +    L
Sbjct: 587 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 646

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKM-SDKDRVVWNIMISA 308
              T ++ M  +   ++DA  L ++M  D D  +W+ ++S+
Sbjct: 647 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 687


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  369 bits (946), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 208/687 (30%), Positives = 374/687 (54%), Gaps = 73/687 (10%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           + ++ S +    C     L Q+HA ++ + GLH++   S+ LI+SYA +G+   S++VF+
Sbjct: 346 LNSSRSLTSHKRCATSTTLTQLHA-HLFITGLHRHPPASTKLIESYAQIGIFESSKRVFD 404

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFI 148
           +   P+S ++G ++K     G +E+ + +Y +M  Q      +  +P V+++        
Sbjct: 405 TFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKA-------- 456

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
                                         C G            F DL        S+ 
Sbjct: 457 ------------------------------CSG------------FGDL--------SVG 466

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI--------VHCVAV 260
            +NG++ +  ++F  M  E  E DS T++++  +  EL SL LGR+        VH   +
Sbjct: 467 GKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVI 526

Query: 261 VSDFCKDLS-VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
                 +L  +  AL+ +Y+   +L D   +F+ + +K  + WN +IS + ++G P+E+L
Sbjct: 527 RRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEAL 586

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L + M   G   D ++  +++S+  T+   + G Q+H  +++ G ++   V N+LIDMY
Sbjct: 587 LLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMY 645

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C  ++ A K+F+ +K K++V+W+SMI G+  +  S+EA+ LF +M +  V++D +T +
Sbjct: 646 AKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFL 705

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +++ AC ++G LE  K++H   +  GL   S ++TA+   Y+KCG ++MA  +FD  ++ 
Sbjct: 706 SVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFD--RMS 763

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            + I++W+ MI+ Y  HG  +    L+ QM  S ++P+ ITF+ +L+AC +AG VEEG++
Sbjct: 764 ERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKL 823

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M E +G EP  +H+A MV+LL RAG ++ A +++  +PF  ++ +WG LL+ C++H
Sbjct: 824 YFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIH 882

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              ++ +   + L+ ++  + G Y LLSNIYA  G W+   K+R+ ++ +GL+K PG S 
Sbjct: 883 KRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYST 942

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTIL 706
           IEI K ++ F   D SH Q   IY  L
Sbjct: 943 IEIDKKIYRFGPGDTSHSQTKDIYRFL 969


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 220/680 (32%), Positives = 367/680 (53%), Gaps = 42/680 (6%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           T+  +F + N  +N +  Q   AR +     H+N + ++ +I  Y   G L  ++++F+ 
Sbjct: 47  TSRSNFRVGNFLKNGELSQ---ARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 103

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +    ++ +  ++   S+  ++++   ++ QM      P   T+  ++  C+        
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI 163

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
            ++  Q++KLG+DS   VG+ LV+ Y K                       ++ + LA Q
Sbjct: 164 TQVQTQIIKLGYDSRLIVGNTLVDSYCK-----------------------SNRLDLACQ 200

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
                    LFK M     E DS T   +L + + L  + LG+ +H   + ++F  ++ V
Sbjct: 201 ---------LFKEM----PEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFV 247

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           + ALL  YSK  S+ DA+ LFD+M ++D V +N++IS Y   G  K + +L   +  + F
Sbjct: 248 SNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAF 307

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
               F     +S  S   + E G+Q+HA  +   +D ++ V NSL+DMY +C     A  
Sbjct: 308 DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEM 367

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           IF ++  ++ V W++MI  YV      E L+LF++M+   V  D  T  ++L A  +I +
Sbjct: 368 IFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIAS 427

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   K LH + +K G  S     +A+   YAKCG I+ A + F E  +  ++I++WN+MI
Sbjct: 428 LSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQE--MPDRNIVSWNAMI 485

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           SAYA++G+     K + +M  S ++PD ++FLG+L+AC ++GLVEEG   F  M + Y  
Sbjct: 486 SAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKL 545

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +P +EHYAS+V++L R+G  +EA +L+ +MP  PD  +W  +L+AC++H   ELA   A+
Sbjct: 546 DPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAAD 605

Query: 631 KLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           +L +ME   +A  YV +SNIYAAAG+W  V+K+   +RDRG+KK P  SW+EI    H F
Sbjct: 606 QLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMF 665

Query: 690 WAADQSHPQADAIYTILGIL 709
            A D+ HPQ + I   + +L
Sbjct: 666 SANDRCHPQIEEIRKKIDML 685


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 228/695 (32%), Positives = 372/695 (53%), Gaps = 11/695 (1%)

Query: 30  MTATHSFSLLNLCENP----QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           M ++   SLL  C N     + ++ +H R + L GL ++++L  +LI+ Y        ++
Sbjct: 1   MESSKLLSLLRECTNSTKSLRRIKLVHQRILTL-GLRRDVVLCKSLINVYFTCKDHCSAR 59

Query: 86  QVF-NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSC 143
            VF N     +  ++ +++   SK   +  TL V+K++   S+  P   T+P VI++   
Sbjct: 60  HVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGA 119

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNS 203
           L     G  IH  VVK G+     V  +LV  Y K +  FEN   +     +   + WN+
Sbjct: 120 LGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNL-FENSLQVFDEMPERDVASWNT 178

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +IS   Q+G++EK+ ELF  M   G E +S +L   + +   L  LE G+ +H   V   
Sbjct: 179 VISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG 238

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D  VN+AL+ MY K   LE A+ +F KM  K  V WN MI  Y   G  K  +E+L 
Sbjct: 239 FELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILN 298

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M+  G R    T  + + + S  +N+  GK +H  V+R+  +  + V+ SLID+Y +C 
Sbjct: 299 RMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCG 358

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           + N A  +F   +     SW+ MI  Y++     +A+ ++ +M   GV+ D VT  ++LP
Sbjct: 359 EANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLP 418

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC  + ALE  K +H    +  L +   + +A+   Y+KCG  + A  +F+   I  KD+
Sbjct: 419 ACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFN--SIPKKDV 476

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W  MISAY  HG   +    + +M++  ++PD +T L +L+AC +AGL++EG   F +
Sbjct: 477 VSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQ 536

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSET 622
           M+  YG EP  EHY+ M+++LGRAG + EA E+++  P   D A +   L SAC +H E 
Sbjct: 537 MRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEH 596

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            L +  A  L+   P++A  Y++L N+YA+   W+   ++R  +++ GL+K PGCSWIE+
Sbjct: 597 SLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEM 656

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELEIMEGR 717
              V  F+A D+SH +A+ +Y  L +L   +  G+
Sbjct: 657 SDKVCHFFAEDRSHLRAENVYECLALLSGHMESGQ 691


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 233/699 (33%), Positives = 388/699 (55%), Gaps = 20/699 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL  C   + ++   ++H+  + L G H    + + L+  YA    LS ++++F+    
Sbjct: 187 ALLKACAKLRDIRSGSELHSLLVKL-GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 245

Query: 94  P-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--- 149
             +++L+ +IL + S  G+  +TL ++++M +    PA ++Y  V    +C  D  S   
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTG--PAPNSYTIVSALTAC--DGFSYAK 301

Query: 150 -GEKIHAQVVKLGFDSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            G++IHA V+K    S +  V +AL+  Y +C    + E+ + Q    D+ + WNSLI  
Sbjct: 302 LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT-WNSLIKG 360

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            VQN   +++ E F  M   G + D  ++ +++ ++  L +L  G  +H   +   +  +
Sbjct: 361 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSN 420

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           L V   L+ MYSK          F +M DKD + W  +I+ Y Q+    E+LEL   + +
Sbjct: 421 LQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK 480

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D     + + + S +K++   K++H ++LR G      + N L+D+Y +C ++  
Sbjct: 481 KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGY 539

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A ++F+S+K K VVSW+SMI     +    EA+ LF  M   G+  D V ++ IL A  +
Sbjct: 540 ATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAAS 599

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL   + +H Y ++ G     S+  A+   YA CG ++ A  +FD  +I+ K ++ + 
Sbjct: 600 LSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFD--RIERKGLLQYT 657

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           SMI+AY  HG      +L+ +M+  +V PD I+FL LL AC +AGL++EGR   K M+  
Sbjct: 658 SMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHE 717

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           Y  EP  EHY  +V++LGRA  + EA E VK M  +P A VW  LL+AC+ HSE E+ E+
Sbjct: 718 YELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEI 777

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A++L+ +EP+N GN VL+SN++A  G+WN V K+R  ++  G++K PGCSWIE+   VH
Sbjct: 778 AAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 837

Query: 688 EFWAADQSHPQADAIYTILGIL--ELEIMEGRRESSEEL 724
           +F A D+SHP++  IY  L  +  +LE  +G+RE + E 
Sbjct: 838 KFTARDKSHPESKEIYEKLSEVTRKLEREKGKRELAREF 876



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 284/533 (53%), Gaps = 19/533 (3%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L LC   + +   +Q+H+R        +   L+  L+  Y   G L  +++VF+ +   
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
            +  + T++      GE    L +Y  M ++ +     ++P ++++C+ L D  SG ++H
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAV 209
           + +VKLG+ S   + +ALV  Y K D     +    +R F   + +     WNS++S   
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKND-----DLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAVVSDFCKDL 268
            +GKS ++ ELF+ M M G   +S T+++ L +       +LG+ +H  V   S    +L
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V  AL++MY++   +  A+ +  +M++ D V WN +I  Y Q+   KE+LE    M+ +
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC- 387
           G ++D  +  + +++   + N+  G ++HA V+++G D  + V N+LIDMY +C +L C 
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKC-NLTCY 439

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
             + F  +  K ++SW+++I GY  +D  +EAL LF ++  + +E+D + + +IL A   
Sbjct: 440 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 499

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + ++  VK +H + ++ GL      N  + + Y KC  +  A  +F  E I  KD+++W 
Sbjct: 500 LKSMLIVKEIHCHILRKGLLDTVIQNELVDV-YGKCRNMGYATRVF--ESIKGKDVVSWT 556

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           SMIS+ A +G+ S+  +L+ +M ++ +  D +  L +L+A  +   + +GR I
Sbjct: 557 SMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREI 609


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 218/656 (33%), Positives = 346/656 (52%), Gaps = 16/656 (2%)

Query: 37  SLLNLCENPQHLQQIHARY--IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           SLLN     Q + +  A +  +I  G     ILS+ L  +YA  G ++ ++++F  +   
Sbjct: 20  SLLNHFAATQSISKTKALHCHVITGGRVSGHILST-LSVTYALCGHITYARKLFEEMPQS 78

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRSCSCLLDFISGEK 152
           + L Y  +++   + G Y   + V+ +M  + +    D  TYPFV ++   L     G  
Sbjct: 79  SLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLV 138

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           +H ++++  F     V +AL+  Y+   G  E    M +  F  +K+R    WN++IS  
Sbjct: 139 VHGRILRSWFGRDKYVQNALLAMYMNF-GKVE----MARDVFDVMKNRDVISWNTMISGY 193

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            +NG    +  +F  M  E  + D  T++++L     LK LE+GR VH +         +
Sbjct: 194 YRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKI 253

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V  AL++MY K   +++A+ +FD+M  +D + W  MI+ Y + G  + +LEL   M   
Sbjct: 254 EVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFE 313

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G R +  T  + VS       +  GK +H   +R      + +  SLI MY +C+ ++  
Sbjct: 314 GVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLC 373

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
            ++F          WS++I G V ++   +AL LF  M+ E VE +  T+ ++LPA   +
Sbjct: 374 FRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAAL 433

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD--EEKIDSKDIITW 506
             L     +H Y  K G  S     T +   Y+KCG +E A ++F+  +EK  SKD++ W
Sbjct: 434 ADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLW 493

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            ++IS Y  HGD     +++ +M +S V P+ ITF   L AC ++GLVEEG  +F+ M E
Sbjct: 494 GALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLE 553

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            Y       HY  +V+LLGRAG +DEA  L+  +PF+P + VWG LL+AC  H   +L E
Sbjct: 554 HYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGE 613

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           + A KL  +EPEN GNYVLL+NIYAA G+W  + K+R+ + + GL+K PG S IEI
Sbjct: 614 MAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEI 669


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 201/536 (37%), Positives = 312/536 (58%), Gaps = 35/536 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++     +     + +L+ +M   G   +S T   LL+S  + K+ E G+ +H   +
Sbjct: 34  WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD------------------------ 296
              +  DL V+T+L+SMY++   LEDA  +FD+ S                         
Sbjct: 94  KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153

Query: 297 -------KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
                  KD V WN MIS Y ++G  KE+LEL   M+++  R D  T +  +S+ +  ++
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E G+Q+H+ +  +G    + + N+LID+Y +C  +  A  +F+ +  K VVSW+++I G
Sbjct: 214 VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGG 273

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLN 467
           Y   +   EAL LF EM   G   + VTI++ILPAC ++GA++  +++H Y  K    + 
Sbjct: 274 YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVT 333

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           +  S+ T++   YAKCG IE A ++F+   +  K + +WN+MI  +A HG  +  F L++
Sbjct: 334 NAPSLRTSLIDMYAKCGDIEAAHQVFNS--MLHKSLSSWNAMIFGFAMHGRANAGFDLFS 391

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M+++ + PD ITF+GLL+AC ++G ++ GR IFK M + Y   P  EHY  M++LLG +
Sbjct: 392 RMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHS 451

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G   EA+E++K MP +PD  +W  LL AC+ H   ELAE  A  L+ +EPEN G+YVLLS
Sbjct: 452 GLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLS 511

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           NIYA AG+W+ VAK+R  L  +G+KK PGCS IEI   VHEF   D+ HP+   IY
Sbjct: 512 NIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIY 567



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 230/477 (48%), Gaps = 58/477 (12%)

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           VF +I  PN L++ T+L+  +   +    L +Y  M    + P   T+PF+++SC+    
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK------------- 193
           F  G++IH  V+KLG++    V  +L+  Y + +G  E+   +  R              
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQ-NGRLEDAHKVFDRSSHRDVVSYTALIT 140

Query: 194 -------------------FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
                               KD+ S WN++IS   + G  +++ ELFK M       D G
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVS-WNAMISGYAETGSYKEALELFKEMMKTNVRPDEG 199

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T++ +L +  + +S+ELGR VH       F  +L +  AL+ +YSK   +E A  LF+ +
Sbjct: 200 TMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGL 259

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           S KD V WN +I  Y      KE+L L   M+RSG   +  T ++ + + + +  I+ G+
Sbjct: 260 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGR 319

Query: 355 QMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
            +H  + +   D     S+  SLIDMY +C D+  A ++F+S+  K++ SW++MI G+  
Sbjct: 320 WIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAM 379

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           H ++     LFS M+  G+E D +T + +L AC + G L+           LG +   S+
Sbjct: 380 HGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLD-----------LGRHIFKSM 428

Query: 473 NTAIFIS--YAKCGC-IEMAGE--LFDEEKIDSK------DIITWNSMISAYAKHGD 518
                I+      GC I++ G   LF E K   K      D + W S++ A  +HG+
Sbjct: 429 TQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGN 485



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 173/365 (47%), Gaps = 41/365 (11%)

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F  + + ++++WN M+  Y  S  P  +L+L + M+  G   + +T    + S +  K 
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE---CED---------------------- 384
            E G+Q+H +VL+ G +  + VH SLI MY +    ED                      
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 385 ------LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
                 +  A+++FD +  K VVSW++MI GY       EAL LF EM    V  D  T+
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + +L AC    ++E  + +H +    G  S   +  A+   Y+KCG +E A  LF  E +
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLF--EGL 259

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KD+++WN++I  Y     + +   L+ +M +S   P+ +T + +L AC + G ++ GR
Sbjct: 260 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGR 319

Query: 559 IIF----KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            I     K++K+     PS     S++++  + G ++ A ++   M  K     W  ++ 
Sbjct: 320 WIHVYIDKKLKDVTN-APSLR--TSLIDMYAKCGDIEAAHQVFNSMLHK-SLSSWNAMIF 375

Query: 615 ACKMH 619
              MH
Sbjct: 376 GFAMH 380



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 183/378 (48%), Gaps = 16/378 (4%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           H++++  + LI  YA+ G +  +Q++F+ I   + + +  ++   ++ G Y++ L ++K+
Sbjct: 129 HRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKE 188

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M   ++ P E T   V+ +C+       G ++H+ +   GF S   + +AL++ Y KC G
Sbjct: 189 MMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC-G 247

Query: 182 GFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
             E   G+ +    KD+ S WN+LI         +++  LF+ M   G   +  T++++L
Sbjct: 248 QVETACGLFEGLSCKDVVS-WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306

Query: 241 RSTVELKSLELGRIVHCV--AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
            +   L ++++GR +H      + D     S+ T+L+ MY+K   +E A  +F+ M  K 
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 366

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN MI  +   G      +L   M ++G   D  T +  +S+ S    ++ G+ +  
Sbjct: 367 LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFK 426

Query: 359 NVLRNGSDYQVSV----HNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
           ++ +   DY ++     +  +ID+         A+++  ++  +   V W S++K    H
Sbjct: 427 SMTQ---DYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRH 483

Query: 414 DQSLEALRLFSE--MKLE 429
             +LE    F+   MK+E
Sbjct: 484 G-NLELAESFARNLMKVE 500



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 136/284 (47%), Gaps = 36/284 (12%)

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  +F +++    + W++M++GY      + AL+L+  M   G+  +  T   +L +C  
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 448 IGALEHVKYLHGYSMKLG----------LNSLSSVN---------------------TAI 476
             A E  + +HG+ +KLG          L S+ + N                     TA+
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              YA  G I  A E+FDE  I  KD+++WN+MIS YA+ G + +  +L+ +M +++VRP
Sbjct: 139 ITGYASSGNIRSAQEMFDE--IPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D  T + +L+AC  +  VE GR +   + + +G+  + +   ++++L  + G ++ A  L
Sbjct: 197 DEGTMVTVLSACAQSRSVELGRQVHSWI-DDHGFGSNLKIVNALIDLYSKCGQVETACGL 255

Query: 597 VKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPEN 639
            + +  K D   W  L+     M+   E   L  E L S E  N
Sbjct: 256 FEGLSCK-DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 221/666 (33%), Positives = 361/666 (54%), Gaps = 9/666 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI-TSPNSLLYGTILKNLS 107
            +QIH  Y++ + L  +  L + LID Y   GL + + +VF  I    N +L+  ++    
Sbjct: 689  KQIHG-YMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFG 747

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
                 E +L +Y      S+     ++   + +CS   +   G +IH  VVK+G D+   
Sbjct: 748  GSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPY 807

Query: 168  VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-WNSLISLAVQNGKSEKSFELFKLMRM 226
            V  +L+  Y KC  G   E   +     D +   WN++++  V+N     + ELF  MR 
Sbjct: 808  VSTSLLSMYSKC--GMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQ 865

Query: 227  EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            +    DS TL N++         + G+ VH            ++ +ALL++YSK     D
Sbjct: 866  KSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTD 925

Query: 287  AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS--GFRADLFTAIAAVSSI 344
            A ++F  M +KD V W  +IS   ++G  KE+L++   M       + D     + +++ 
Sbjct: 926  AYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINAC 985

Query: 345  STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
            + ++ + +G Q+H ++++ G    V V +SLID+Y +C     A K+F S++ + +V+W+
Sbjct: 986  AGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWN 1045

Query: 405  SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
            SMI  Y  ++    ++ LF+ M  +G+  D V+I ++L A  +  +L   K LHGY+++L
Sbjct: 1046 SMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRL 1105

Query: 465  GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            G+ S + +  A+   Y KCG  + A  +F  +K+  K +ITWN MI  Y  HGD      
Sbjct: 1106 GIPSDTHLKNALIDMYVKCGFSKYAENIF--KKMQHKSLITWNLMIYGYGSHGDCRTALS 1163

Query: 525  LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
            L+ ++K++   PD +TFL L++AC ++G VEEG+  F+ MK+ YG EP  EHYA+MV+LL
Sbjct: 1164 LFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLL 1223

Query: 585  GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
            GRAG ++EA   +K MP + D+ +W  LLSA + H   EL  L+AEKL+ MEPE    YV
Sbjct: 1224 GRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYV 1283

Query: 645  LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
             L N+Y  AG  N  AK+   +++RGL+K PGCSWIE+  + + F++   S P    I+ 
Sbjct: 1284 QLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSDISNVFFSGGSSSPIKAEIFK 1343

Query: 705  ILGILE 710
            +L  L+
Sbjct: 1344 VLNRLK 1349



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 272/557 (48%), Gaps = 29/557 (5%)

Query: 89   NSITSPNSLLYGTILKNLSKFGEYEKTLLVY-KQMALQSMYPAEDTYPFVIRSCSCLLDF 147
            +S  SP S+  G  ++ L + GEY + L +Y K      ++ +  T+P ++++CS L + 
Sbjct: 520  DSYISPASVNSG--IRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNL 577

Query: 148  ISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKF--KDLKSR 200
             SG+ IH  ++ LG  +D F  +  +LV  Y+KC   D   +   G  Q     +D+ + 
Sbjct: 578  SSGKTIHGSIIVLGWRYDPF--IATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDV-TV 634

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL---INLLRSTVELKSLELGRIVHC 257
             NS+I    +  + ++    F+ M + G   D+ +L   +++L      +  E G+ +H 
Sbjct: 635  CNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRR-EDGKQIHG 693

Query: 258  VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPK 316
              + +    D  + TAL+ MY K     DA  +F ++ DK  VV WN+MI  +  S   +
Sbjct: 694  YMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICE 753

Query: 317  ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
             SLEL M    +  +    +   A+ + S  +N  +G+Q+H +V++ G D    V  SL+
Sbjct: 754  SSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLL 813

Query: 377  DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
             MY +C  +  A  +F  V  K +  W++M+  YV +D    AL LF  M+ + V  D  
Sbjct: 814  SMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSF 873

Query: 437  TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            T+ N++  C   G  ++ K +H    K  + S  ++ +A+   Y+KCGC   A  +F  +
Sbjct: 874  TLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVF--K 931

Query: 497  KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPDLITFLGLLTACVNAGLV 554
             ++ KD++ W S+IS   K+G + +  K++  MK  D  ++PD      ++ AC     +
Sbjct: 932  SMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEAL 991

Query: 555  EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV-WGPLL 613
              G  +   M ++ G   +    +S+++L  + G  + A ++   M  +P+  V W  ++
Sbjct: 992  SFGLQVHGSMIKT-GQVLNVFVGSSLIDLYSKCGLPEMALKVFTSM--RPENIVAWNSMI 1048

Query: 614  SACKMHSETELAELTAE 630
            S    +S   L EL+ E
Sbjct: 1049 SC---YSRNNLPELSIE 1062


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 221/706 (31%), Positives = 364/706 (51%), Gaps = 73/706 (10%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM- 122
           N+I  + +++ YA LG LS + ++F  + + +   + TI+    + G++   L ++  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL--GFDSFDD--VGDALVEFYIK 178
                 P   T+  V++SC  L       ++  Q++ L   FDS DD  V  ALV+  ++
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGAL----GWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVR 206

Query: 179 CDG------------------------GFENEKGMIQ--RKFKDLKSR----WNSLISLA 208
           C                          G+    G+      FK +  R    WN +IS  
Sbjct: 207 CGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISAL 266

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            ++G+  ++ ++   M  +G   DS T  + L +   L SLE G+ +H   + +    D 
Sbjct: 267 SKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDP 326

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V +A++ +Y+K    ++AK +F  + D++ V W ++I  + Q G   ES+EL   M   
Sbjct: 327 YVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC- 387
               D F     +S      +I  G Q+H+  L++G    V V NSLI MY +C +L   
Sbjct: 387 LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNA 446

Query: 388 ------------------------------ARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
                                         AR+ FD + T+ V++W++M+  Y+ H    
Sbjct: 447 ELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEE 506

Query: 418 EALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
           + L+++S+M  E  V  D+VT + +   C +IGA +    + G+++K+GL   +SV  A+
Sbjct: 507 DGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAV 566

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y+KCG I  A + FD   +  KD+++WN+MI+ Y++HG   Q  +++  +     +P
Sbjct: 567 ITMYSKCGRISEARKAFD--FLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKP 624

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D I+++ +L+ C ++GLVEEG+  F  MK  +   P  EH++ MV+LLGRAGH+ EA+ L
Sbjct: 625 DYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNL 684

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           + +MP KP A VWG LLSACK H   +LAEL A+ L  ++   +G Y+LL+ +YA AGK 
Sbjct: 685 IDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKS 744

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           +  A++R  +RD+G+KK+PG SW+E+   VH F A D SHPQ  AI
Sbjct: 745 DDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAI 790



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 188/402 (46%), Gaps = 42/402 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + +I +  H +  ++S +++ YA  G    +++VF+S+   NS+ +  ++    +
Sbjct: 311 KQLHVQ-VIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQ 369

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           +G + +++ ++ QM  + M   +     +I  C   +D   G ++H+  +K G      V
Sbjct: 370 YGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVV 429

Query: 169 GDALVEFYIKCDGGFENEK---------------GMI------------QRKFKDLKSR- 200
            ++L+  Y KC G  +N +               GMI            +  F D+ +R 
Sbjct: 430 SNSLISMYAKC-GNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRN 488

Query: 201 ---WNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVH 256
              WN+++   +Q+G  E   +++  M  E     D  T + L R   ++ + +LG  + 
Sbjct: 489 VITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQII 548

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              V      D SV  A+++MYSK   + +A+  FD +S KD V WN MI+ Y Q G  K
Sbjct: 549 GHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGK 608

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV----H 372
           +++E+   ++  G + D  + +A +S  S    +E GK  + ++++   D+ +S      
Sbjct: 609 QAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGK-FYFDMMKR--DHNISPGLEHF 665

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTH 413
           + ++D+      L  A+ + D +  K T   W +++    TH
Sbjct: 666 SCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTH 707



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 123/321 (38%), Gaps = 67/321 (20%)

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR---------- 389
           A+ S      +   + +H+ ++  G    V + N+L+  Y  C  L+ AR          
Sbjct: 31  ALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEP 90

Query: 390 ----------------------KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
                                 ++F  + T+ V SW++++ GY    Q L AL +F  M+
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 428 LEGVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
             G  + +  T   ++ +C  +G  E    L G   K        V TA+     +CG +
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 487 EMAGELFDEEK-----------------------------IDSKDIITWNSMISAYAKHG 517
           + A + F   K                             +  +D+++WN +ISA +K G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
              +   +   M    VRPD  T+   LTAC     +E G+ +  ++  +    P  + Y
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNL---PHIDPY 327

Query: 578 --ASMVNLLGRAGHMDEAREL 596
             ++MV L  + G   EA+ +
Sbjct: 328 VASAMVELYAKCGCFKEAKRV 348



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 5/161 (3%)

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            + + L +C    AL   + LH   + +GL S+  +   +  +Y  CG +  A  L  +E
Sbjct: 27  ALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            I   ++IT N M++ YAK G  S   +L+ +M   DV     ++  +++    +G    
Sbjct: 87  -ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDV----ASWNTIMSGYYQSGQFLN 141

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
              IF  M+++    P+   +  ++   G  G  + A +L+
Sbjct: 142 ALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLL 182


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1028

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 218/661 (32%), Positives = 360/661 (54%), Gaps = 12/661 (1%)

Query: 51   IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
            +HA  I L GL  N+ + S+L+  Y+    +  + +VF ++   N +L+  +++  +  G
Sbjct: 349  VHAEAIKL-GLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNG 407

Query: 111  EYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            E  K + ++  M   S Y  +D T+  ++ +C+   D   G + H+ ++K        VG
Sbjct: 408  ESHKVMELFMDMK-SSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVG 466

Query: 170  DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            +ALV+ Y KC G  E+ + + +         WN++I   VQ+    ++F+LF  M   G 
Sbjct: 467  NALVDMYAKC-GALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGI 525

Query: 230  EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
              D   L + L++   +  L  G+ VHC++V     + L   ++L+ MYSK   +EDA+ 
Sbjct: 526  VSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARK 585

Query: 290  LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            +F  M +   V  N +I+ Y Q+   +E++ L   M+  G      T    V +    ++
Sbjct: 586  VFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEACHKPES 644

Query: 350  IEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMI 407
            +  G Q H  +++ G S     +  SL+ +Y     +  A  +F  + + K++V W+ M+
Sbjct: 645  LTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMM 704

Query: 408  KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-- 465
             G+  +    EAL+ + EM+ +G   D  T + +L  C  + +L   + +H     L   
Sbjct: 705  SGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHD 764

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            L+ L+S NT I + YAKCG ++ + ++FDE +  S ++++WNS+I+ YAK+G      K+
Sbjct: 765  LDELTS-NTLIDM-YAKCGDMKSSSQVFDEMRRRS-NVVSWNSLINGYAKNGYAEDALKI 821

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            +  M+QS + PD ITFLG+LTAC +AG V +GR IF+ M   YG E   +H A MV+LLG
Sbjct: 822  FDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLG 881

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            R G++ EA + ++    KPDAR+W  LL AC++H +    E+ AE+LI +EP+N+  YVL
Sbjct: 882  RWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVL 941

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            LSNIYA+ G+W     +R  +RDRG+KK PG SWI++G+  H F A DQSH     I   
Sbjct: 942  LSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKIEMF 1001

Query: 706  L 706
            L
Sbjct: 1002 L 1002



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 150/551 (27%), Positives = 263/551 (47%), Gaps = 13/551 (2%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I++Y +LG L  ++ +F  + SP+ + +  ++    K G     +  +  M   S+  
Sbjct: 266 TVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKS 325

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T   V+ +   + +   G  +HA+ +KLG  S   VG +LV  Y KC+     +   
Sbjct: 326 TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCE-----KMEA 380

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
             + F+ L+ R    WN++I     NG+S K  ELF  M+  G   D  T  +LL +   
Sbjct: 381 AAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAV 440

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
              LE+G   H + +     K+L V  AL+ MY+K  +LEDA+ +F+ M D+D V WN +
Sbjct: 441 SHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTI 500

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I  Y Q     E+ +L M M   G  +D     + + + + +  +  GKQ+H   ++ G 
Sbjct: 501 IGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGL 560

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D  +   +SLIDMY +C  +  ARK+F S+   +VVS +++I GY + +   EA+ LF E
Sbjct: 561 DRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGY-SQNNLEEAVVLFQE 619

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS-VNTAIFISYAKCG 484
           M  +GV    +T   I+ AC    +L      HG  +K G +S    +  ++   Y    
Sbjct: 620 MLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSR 679

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  LF E     K I+ W  M+S ++++G + +  K Y +M+     PD  TF+ +
Sbjct: 680 RMAEACALFSELS-SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTV 738

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L  C     + EGR I   +     ++  +    +++++  + G M  + ++  +M  + 
Sbjct: 739 LRVCSVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRS 797

Query: 605 DARVWGPLLSA 615
           +   W  L++ 
Sbjct: 798 NVVSWNSLING 808



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 156/589 (26%), Positives = 275/589 (46%), Gaps = 55/589 (9%)

Query: 44  NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
           N +  +QIH   I + GL +N      L+D YA    L  +Q+VF+ I  PN++ +  + 
Sbjct: 175 NVEFGRQIHCSMIKM-GLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLF 233

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
               K G  E+ ++V+++M  +   P    +  VI +      +IS  K+    +  G  
Sbjct: 234 SGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINT------YISLGKLKDARLLFGEM 287

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
              DV                                WN +IS   + G    + E F  
Sbjct: 288 PSPDV------------------------------VAWNVMISGHGKRGCEIVAIEYFLN 317

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           MR    +    TL ++L +   + +L+LG +VH  A+      ++ V ++L+SMYSK   
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E A  +F+ + +++ V+WN MI  Y  +G   + +EL M M  SG+  D FT  + +S+
Sbjct: 378 MEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +   ++E G Q H+ +++      + V N+L+DMY +C  L  AR+IF+ +  +  VSW
Sbjct: 438 CAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSW 497

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GYV  +   EA  LF  M   G+  D   + + L AC N+  L   K +H  S+K
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVK 557

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL+ +    +++   Y+KCG IE A ++F    +    +++ N++I+ Y+++ +  +  
Sbjct: 558 CGLDRVLHTGSSLIDMYSKCGIIEDARKVF--SSMPEWSVVSMNALIAGYSQN-NLEEAV 614

Query: 524 KLYTQMKQSDVRPDLITFLGLLTAC-----VNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
            L+ +M    V P  ITF  ++ AC     +  G    G+II       +G+    E+  
Sbjct: 615 VLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQII------KWGFSSEGEYLG 668

Query: 579 -SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            S++ L   +  M EA  L  ++       +W  ++S    HS+    E
Sbjct: 669 ISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSG---HSQNGFYE 714



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/557 (25%), Positives = 264/557 (47%), Gaps = 49/557 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +H++ +IL G+     L + ++D YA    +S +++ FNS+   +   + ++L   S 
Sbjct: 80  KAVHSKSLIL-GIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSS 137

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+  K L  +  +    ++P + T+  V+ + +   +   G +IH  ++K+G +     
Sbjct: 138 IGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYC 197

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G ALV+ Y KCD       G  QR F  +       W  L S  V+ G  E++  +F+ M
Sbjct: 198 GGALVDMYAKCD-----RLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERM 252

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           R EG   D    + +                              +NT     Y  L  L
Sbjct: 253 RGEGHRPDHLAFVTV------------------------------INT-----YISLGKL 277

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           +DA++LF +M   D V WN+MIS + + G    ++E  + M +S  ++   T  + +S+I
Sbjct: 278 KDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAI 337

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
             + N++ G  +HA  ++ G    + V +SL+ MY +CE +  A K+F++++ +  V W+
Sbjct: 338 GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWN 397

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI+GY  + +S + + LF +MK  G  +D  T  ++L  C     LE     H   +K 
Sbjct: 398 AMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKK 457

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            L     V  A+   YAKCG +E A ++F  E +  +D ++WN++I  Y +  + S+ F 
Sbjct: 458 KLTKNLFVGNALVDMYAKCGALEDARQIF--EHMCDRDNVSWNTIIGGYVQDENESEAFD 515

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+ +M    +  D       L AC N   + +G+ +   +    G +      +S++++ 
Sbjct: 516 LFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHC-LSVKCGLDRVLHTGSSLIDMY 574

Query: 585 GRAGHMDEARELVKDMP 601
            + G +++AR++   MP
Sbjct: 575 SKCGIIEDARKVFSSMP 591



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 215/460 (46%), Gaps = 58/460 (12%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK---SRWNSLIS 206
           G+ +H++ + LG DS   +G+A+V+ Y KC      +    +++F  L+   + WNS++S
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKC-----AQVSYAEKQFNSLEKDVTAWNSMLS 133

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS-LELGRIVHCVAVVSDFC 265
           +    G+  K    F  +  E   F +    +++ ST   ++ +E GR +HC  +     
Sbjct: 134 MYSSIGQPGKVLRSFVSL-FENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLE 192

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           ++     AL+ MY+K   L DA+ +FD + D + V W  + S Y ++G P+E++ +   M
Sbjct: 193 RNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERM 252

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G R D    +                                   ++I+ Y     L
Sbjct: 253 RGEGHRPDHLAFV-----------------------------------TVINTYISLGKL 277

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             AR +F  + +  VV+W+ MI G+      + A+  F  M+   V+    T+ ++L A 
Sbjct: 278 KDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAI 337

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             +  L+    +H  ++KLGL S   V +++   Y+KC  +E A ++F  E ++ ++ + 
Sbjct: 338 GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVF--EALEERNDVL 395

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR-----II 560
           WN+MI  YA +G+  +  +L+  MK S    D  TF  LL+ C  +  +E G      II
Sbjct: 396 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIII 455

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            K++ ++           ++V++  + G +++AR++ + M
Sbjct: 456 KKKLTKNLFVGN------ALVDMYAKCGALEDARQIFEHM 489



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 170/375 (45%), Gaps = 40/375 (10%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +L +G+ VH  +++     +  +  A++ +Y+K A +  A+  F+ + +KD   WN M+S
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLS 133

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            Y   G P + L   + +  +    + FT    +S+ +   N+E+G+Q+H ++++ G + 
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
                 +L+DMY +C+ L  A+++FD +     V W+ +  GYV      EA+ +F  M+
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            EG   D +  + ++   +++G L+  + L G                            
Sbjct: 254 GEGHRPDHLAFVTVINTYISLGKLKDARLLFG---------------------------- 285

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
                    ++ S D++ WN MIS + K G      + +  M++S V+    T   +L+A
Sbjct: 286 ---------EMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSA 336

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
                 ++ G ++  E  +  G   +    +S+V++  +   M+ A ++ + +  + D  
Sbjct: 337 IGIVANLDLGLVVHAEAIK-LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDV- 394

Query: 608 VWGPLLSACKMHSET 622
           +W  ++     + E+
Sbjct: 395 LWNAMIRGYAHNGES 409



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +++  C  P+ L    Q H + I      +   L  +L+  Y N   ++ +  +F+ ++S
Sbjct: 634 TIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSS 693

Query: 94  PNSL-LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           P S+ L+  ++   S+ G YE+ L  YK+M      P + T+  V+R CS L     G  
Sbjct: 694 PKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRA 753

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH+ +  L  D  +   + L++ Y KC     + +   + + +     WNSLI+   +NG
Sbjct: 754 IHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNG 813

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +E + ++F  MR      D  T + +L +      +  GR
Sbjct: 814 YAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGR 854


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 336/609 (55%), Gaps = 7/609 (1%)

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G   K LL+++QM    + P   T+P V ++CS LL+    + +H  VVK  F +   V 
Sbjct: 33  GYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQ 92

Query: 170 DALVEFYIKCDG-GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++V+ Y+KC   GF     +  R  K   + WNS+I    Q G  ++   LF  M +EG
Sbjct: 93  TSVVDMYVKCSQLGFAYN--LFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEG 150

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              DS T+I L  S + LK L++   +H   +      D+SV+   ++ Y+K      A+
Sbjct: 151 IRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAE 210

Query: 289 MLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            +FD +    K  V WN MI+ Y       +++     M+  GFRADL T ++ +SS   
Sbjct: 211 TVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQ 270

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            + +  GK +HA+ ++ G D  + V N+LI MY +C D+  AR +FD++  KT VSW++M
Sbjct: 271 PEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAM 330

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I GY       EA+ LFS M+  G + D VTII+++  C   GALE  K++  Y+   GL
Sbjct: 331 IAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGL 390

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V  A+   YAKCG ++ A ELF    +  K +++W ++I+  A +G++ +   L+
Sbjct: 391 KDNLMVCNALIDVYAKCGSMDNARELF--YTMPEKSLVSWTTLIAGCALNGEFKEALGLF 448

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            QM +  ++P+ ITFL +L AC +AG +E+G   F  M + Y   P  +HY+ M +LLGR
Sbjct: 449 FQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGR 508

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
            G + EA E +++MPFKPD  +W  LLSACK+H    + E  A  L  +EP+ A  YV +
Sbjct: 509 KGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQM 568

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +NIYA+AGKW+ VA +RT ++     K+PG S +++    HEF   D+ HP+   IY  L
Sbjct: 569 ANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVNGKTHEFTVEDRCHPEGLLIYETL 628

Query: 707 GILELEIME 715
             L L++ E
Sbjct: 629 ENLALQMKE 637



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 224/425 (52%), Gaps = 6/425 (1%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           ++WNS I+ +V  G + K+  LF+ M+  G E ++ T  ++ ++  +L +L+  +IVH  
Sbjct: 20  AQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTH 79

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            V S F  DL V T+++ MY K + L  A  LF +M  +D   WN MI  + Q GF    
Sbjct: 80  VVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRV 139

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + L   M   G RAD  T I    S  ++K+++  + +H+  ++ G D  VSV N+ I  
Sbjct: 140 VSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAA 199

Query: 379 YCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           Y +C +   A  +FD +    KT VSW+SMI GY   +Q  +A+  F +M   G   D  
Sbjct: 200 YAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLS 259

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           TI+++L +CV    L H K +H + +++G +S   V   +   Y+KCG I  A  LFD  
Sbjct: 260 TILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDN- 318

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            +  K  ++W +MI+ YA+ GD  +   L++ M+    +PDL+T + L++ C   G +E 
Sbjct: 319 -MLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALEL 377

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+ I      + G + +     +++++  + G MD AREL   MP K     W  L++ C
Sbjct: 378 GKWI-DTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS-WTTLIAGC 435

Query: 617 KMHSE 621
            ++ E
Sbjct: 436 ALNGE 440



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 215/437 (49%), Gaps = 17/437 (3%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P N T P +    S  LLNL    ++ Q +H  +++      +L + ++++D Y     L
Sbjct: 52  PNNLTFPSVAKACS-KLLNL----KYSQIVHT-HVVKSRFQADLFVQTSVVDMYVKCSQL 105

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
             +  +F+ +   +   + +++   ++ G  ++ + ++ +M ++ +     T   +  S 
Sbjct: 106 GFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSA 165

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF----KDL 197
             L D    E IH+  +K+G D+   V +  +  Y KC      E G+ +  F    K L
Sbjct: 166 LSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKC-----GEFGLAETVFDGIDKGL 220

Query: 198 KS--RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           K+   WNS+I+      +  K+   FK M   G   D  T+++LL S V+ + L  G+++
Sbjct: 221 KTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLI 280

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +      D+ V   L+SMYSK   +  A+ LFD M  K RV W  MI+ Y + G  
Sbjct: 281 HAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDL 340

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            E++ L   M   G + DL T I+ +S       +E GK +      NG    + V N+L
Sbjct: 341 DEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNAL 400

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           ID+Y +C  ++ AR++F ++  K++VSW+++I G   + +  EAL LF +M   G++ + 
Sbjct: 401 IDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNH 460

Query: 436 VTIINILPACVNIGALE 452
           +T + +L AC + G LE
Sbjct: 461 ITFLAVLQACNHAGFLE 477



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
           TV  W+S I   V    + +AL LF +MK  G+E + +T  ++  AC  +  L++ + +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            + +K    +   V T++   Y KC  +  A  LF   ++  +D+ +WNSMI  +A+ G 
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLF--SRMPKRDVASWNSMILGFAQLGF 135

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGL 544
             +   L+ +M    +R D +T +GL
Sbjct: 136 VDRVVSLFCEMGIEGIRADSVTVIGL 161



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y   +GL  NL++ + LID YA  G +  ++++F ++   + + + T++   +  GE+++
Sbjct: 384 YATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKE 443

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            L ++ QM    + P   T+  V+++C+           HA  ++ G++ F+
Sbjct: 444 ALGLFFQMVELGLKPNHITFLAVLQACN-----------HAGFLEKGWECFN 484


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/642 (32%), Positives = 357/642 (55%), Gaps = 16/642 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   ++ + + L+  Y N GL   + +VF+ +   + + + T++   S  G YE+ L  +
Sbjct: 167 GFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFF 226

Query: 120 KQM--ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFY 176
           + M  A   + P   T   V+  C+   D +    +H   +K+G       VG+ALV+ Y
Sbjct: 227 RVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVY 286

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
            KC     +EK   ++ F ++  R    WN++I+     GK   + ++F+LM  EG   +
Sbjct: 287 GKCG----SEKAS-KKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPN 341

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
           S T+ ++L    EL   +LG  VH  ++      D+ ++ +L+ MY+K  S   A  +F+
Sbjct: 342 SVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFN 401

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           KM  ++ V WN MI+ + ++    E++EL+  M   G   +  T    + + + +  +  
Sbjct: 402 KMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNV 461

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           GK++HA ++R GS   + V N+L DMY +C  LN A+ +F+ +  +  VS++ +I GY  
Sbjct: 462 GKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSR 520

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
            + SLE+LRLFSEM+L G+  D V+ + ++ AC N+  +   K +HG  ++   ++   V
Sbjct: 521 TNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFV 580

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             ++   Y +CG I++A ++F    I +KD+ +WN+MI  Y   G+      L+  MK+ 
Sbjct: 581 ANSLLDLYTRCGRIDLATKVF--YCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKED 638

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            V  D ++F+ +L+AC + GL+E+GR  FK M +    EP+  HYA MV+LLGRAG M+E
Sbjct: 639 GVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCD-LNIEPTHTHYACMVDLLGRAGLMEE 697

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A +L++ +   PD  +WG LL AC++H   EL    AE L  ++P++ G Y+LLSN+YA 
Sbjct: 698 AADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAE 757

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           A +W+   K+R  ++ RG KK PGCSW+++G LVH F   ++
Sbjct: 758 AERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEK 799



 Score =  252 bits (644), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 165/598 (27%), Positives = 316/598 (52%), Gaps = 22/598 (3%)

Query: 38  LLNLCENPQHLQQIHARYIILHG-LHQNLILSSNLIDSYANLGLLSLSQQVF-NSIT-SP 94
           L  LC+     +Q+HA Y +LHG L +++ L ++LI  YA+ G  S S  +F +S+  S 
Sbjct: 43  LCTLCDTLSQTKQVHA-YSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSR 101

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           ++ L+ T+++  S  G ++     Y  M    + P E TYPFV++ CS  ++   G ++H
Sbjct: 102 SAFLWNTLIRANSIAGVFDG-FGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVH 160

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
               KLGFD    VG+ L+ FY  C G F +   +     +  K  WN++I L   +G  
Sbjct: 161 GVAFKLGFDGDVFVGNTLLAFYGNC-GLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFY 219

Query: 215 EKSFELFKLM--RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV-VSDFCKDLSVN 271
           E++   F++M     G + D  T++++L    E +   + RIVHC A+ V      + V 
Sbjct: 220 EEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVG 279

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL+ +Y K  S + +K +FD++ +++ + WN +I+++   G   ++L++   M+  G R
Sbjct: 280 NALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMR 339

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T  + +  +  +   + G ++H   L+   +  V + NSLIDMY +      A  I
Sbjct: 340 PNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTI 399

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +  + +VSW++MI  +  +    EA+ L  +M+ +G   + VT  N+LPAC  +G L
Sbjct: 400 FNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFL 459

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              K +H   +++G +    V+ A+   Y+KCGC+ +A  +F+   I  +D +++N +I 
Sbjct: 460 NVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN---ISVRDEVSYNILII 516

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR----IIFKEMKES 567
            Y++  D  +  +L+++M+   +RPD+++F+G+++AC N   + +G+    ++ +++  +
Sbjct: 517 GYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHT 576

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           + +  +     S+++L  R G +D A ++   +  K D   W  ++    M  E + A
Sbjct: 577 HLFVAN-----SLLDLYTRCGRIDLATKVFYCIQNK-DVASWNTMILGYGMRGELDTA 628



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 4/199 (2%)

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKI 498
           N+L  C     L   K +H YS+  G    S S+  ++ + YA  G    +  LF     
Sbjct: 39  NLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVA 98

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
            S+    WN++I A +  G +   F  Y  M ++ V+PD  T+  +L  C +   V +GR
Sbjct: 99  YSRSAFLWNTLIRANSIAGVFDG-FGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGR 157

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +   +    G++       +++   G  G   +A ++  +MP + D   W  ++  C +
Sbjct: 158 EV-HGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMP-ERDKVSWNTVIGLCSL 215

Query: 619 HSETELAELTAEKLISMEP 637
           H   E A      +++ +P
Sbjct: 216 HGFYEEALGFFRVMVAAKP 234


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 340/594 (57%), Gaps = 7/594 (1%)

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-FDSFDDVGDALVEFYIKCDGGFEN 185
            YP E  +  V R+CS   +   G+ I   ++K G F+S   VG AL++ ++K +G  E+
Sbjct: 38  FYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLES 97

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
              +  R        W  +I+   Q G S  + +LF  M + G   D  TL  ++ +  E
Sbjct: 98  AYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAE 157

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL---ASLEDAKMLFDKMSDKDRVVW 302
           +  L LGR  HC+ + S    D+ V  +L+ MY+K     S++DA+ +FD+M   + + W
Sbjct: 158 MGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSW 217

Query: 303 NIMISAYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
             +I+ Y QSG   +E++EL + MV+   + + FT  + + + + + +I  G+Q++A V+
Sbjct: 218 TAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           +        V NSLI MY  C ++  ARK FD +  K +VS+++++  Y     S EA  
Sbjct: 278 KMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFE 337

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF+E++  G  V+  T  ++L    +IGA+   + +H   +K G  S   +  A+   Y+
Sbjct: 338 LFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYS 397

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG IE A ++F+E  +   ++I+W SMI+ +AKHG  ++  + + +M ++ V P+ +T+
Sbjct: 398 RCGNIEAAFQVFNE--MGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTY 455

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC + GL+ EG   FK MK  +G  P  EHYA +V+LLGR+GH++EA ELV  MP
Sbjct: 456 IAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMP 515

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           FK DA V    L AC++H   +L +  AE ++  +P +   Y+LLSN++A+AG+W  VA+
Sbjct: 516 FKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAE 575

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +R  +++R L K  GCSWIE+   VH+F+  D SHPQA  IY  L  L L+I E
Sbjct: 576 IRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKE 629



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 255/537 (47%), Gaps = 10/537 (1%)

Query: 38  LLNLCENPQH--LQQIHARYIILHG-LHQNLILSSNLIDSYA-NLGLLSLSQQVFNSITS 93
           +   C N ++  L +I   +++  G    ++ +   LID +    G L  + +VF+ +  
Sbjct: 48  VFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPD 107

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  ++    + G     + ++  M L    P   T   V+ +C+ +     G + 
Sbjct: 108 RNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQF 167

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKC--DGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           H  V+K G D    VG +LV+ Y KC  DG  ++ + +  R        W ++I+  VQ+
Sbjct: 168 HCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQS 227

Query: 212 GKSEK-SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           G  ++ + ELF  M     + +  T  ++L++   L  + LG  V+ + V         V
Sbjct: 228 GGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCV 287

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L+SMYS+  ++E+A+  FD + +K+ V +N +++AY +S   +E+ EL   +  +G 
Sbjct: 288 GNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGT 347

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             + FT  + +S  S++  I  G+Q+H+ +L++G    + + N+LI MY  C ++  A +
Sbjct: 348 GVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQ 407

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F+ +    V+SW+SMI G+  H  +  AL  F +M   GV  + VT I +L AC ++G 
Sbjct: 408 VFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGL 467

Query: 451 L-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           + E +K+     ++ G+         +     + G +E A EL +     + D +   + 
Sbjct: 468 ISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKA-DALVLRTF 526

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           + A   HG+     K   +M       D   ++ L     +AG  EE   I K+MKE
Sbjct: 527 LGACRVHGNM-DLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKE 582



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 160/325 (49%), Gaps = 10/325 (3%)

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           +D V W+ +IS Y  +    E++     M+  GF  + +       + S  +NI  GK +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 357 HANVLRNGS-DYQVSVHNSLIDMYCECE-DLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
              +L+ G  +  V V  +LIDM+ +   DL  A K+FD +  + VV+W+ MI  +    
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
            S +A+ LF +M L G   D  T+  ++ AC  +G L   +  H   MK GL+    V  
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 475 AIFISYAKC---GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS-QCFKLYTQMK 530
           ++   YAKC   G ++ A ++FD  ++   ++++W ++I+ Y + G    +  +L+ +M 
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFD--RMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           Q  V+P+  TF  +L AC N   +  G  ++  +              S++++  R G+M
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYA-LVVKMRLASINCVGNSLISMYSRCGNM 301

Query: 591 DEARELVKDMPFKPDARVWGPLLSA 615
           + AR+   D+ F+ +   +  +++A
Sbjct: 302 ENARKAF-DVLFEKNLVSYNTIVNA 325



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 1/104 (0%)

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + +D+++W+++IS YA +    +    +  M +    P+   F G+  AC N   +  G+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRA-GHMDEARELVKDMP 601
           IIF  + ++  +E       +++++  +  G ++ A ++   MP
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMP 106


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/664 (31%), Positives = 374/664 (56%), Gaps = 11/664 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q  + +HA+ I L      + L+++LI+ YA    L  ++ VF+ I + + + +  ++  
Sbjct: 24  QKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLING 83

Query: 106 LSKFGEYEKTLL--VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-- 161
            S+ G    + +  ++++M   ++ P   T+  +  + S L     G++ HA  +K+   
Sbjct: 84  YSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACF 143

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS-LAVQNGKSEKSFEL 220
           +D F  VG +L+  Y K    FE  + +  R  +  +  W ++IS  A+Q    E +FE+
Sbjct: 144 YDVF--VGSSLLNMYCKAGLLFEARE-VFDRMPERNEVTWATMISGYAIQRLAGE-AFEV 199

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F+LMR E  + +     ++L +    + ++ G+ +HC+AV +     LS+  AL++MY+K
Sbjct: 200 FELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAK 259

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             SL+D+  +F+  +DK+ + W+ MI+ Y QSG   ++L+L   M  +G     FT +  
Sbjct: 260 CGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGV 319

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +++ S    +E GKQ+H  +L+ G + Q+ +  +L+DMY +      ARK F+ ++   +
Sbjct: 320 LNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDL 379

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V W+SMI GYV + ++ +AL L+  M++EG+  + +T+ ++L AC N+ A +  + +H  
Sbjct: 380 VLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHAR 439

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           ++K GL    ++ +A+   YAKCG +E    +F   ++  +DII+WN+MIS  +++G   
Sbjct: 440 TIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVF--RRMPERDIISWNAMISGLSQNGYGK 497

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +  +L+ +M+Q D +PD +TF+ +L+AC + GLV+ G + F+ M + +G  P  EHYA M
Sbjct: 498 EALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACM 557

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V++L RAG + EA+E ++         +W  LL AC+ +   EL     EKL+ +  + +
Sbjct: 558 VDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQES 617

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLS IY A G+   V ++R+ ++ RG+ K PGCSWIE+   VH F   DQ HP   
Sbjct: 618 SAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIG 677

Query: 701 AIYT 704
            I T
Sbjct: 678 EIRT 681


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 312/533 (58%), Gaps = 6/533 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLA 208
           G +IH    + G DS   V   ++  Y +C G  +  K + Q  K +DL + W+++I+  
Sbjct: 7   GTEIHDFARQQGIDSDVAVATPIMTMYARC-GEVDTAKQLFQEIKGRDLVA-WSAIIAAF 64

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ+G  +++  LF+ M+ EG + +   L++ L +  E+ SL+LG+ +HC AV ++   D+
Sbjct: 65  VQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDI 124

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           SV TAL+SMY+K      A  LF++M  KD V WN MI+ Y Q G P  +LE+   +  S
Sbjct: 125 SVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLS 184

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
               +  T +  + + + + +++ G  +H  +++ G + +  V  +LIDMY +C  L+ A
Sbjct: 185 ELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGA 244

Query: 389 RKIFDSVKT-KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
             +F      K  VSW+ MI GY+    +++A   F +MKLE ++ + VTI+ +LPA  +
Sbjct: 245 EFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAH 304

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL     LH Y +++G  S + V   +   YAKCG ++ + ++F E K  +KD ++WN
Sbjct: 305 LSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMK--NKDTVSWN 362

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            M++ YA HG  S   +L+++M+ S++R D  +F+ +L+AC +AGL+ EGR IF  M + 
Sbjct: 363 VMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQ 422

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +  EP  EHYA M +LLGRAG  +E  +L+K MP +PDA VWG LL A  MHS  +LAE 
Sbjct: 423 HQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEF 482

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
               L  +E +N  +Y  LSN YA +G+W  V   R+ +   GL+K+PG SW+
Sbjct: 483 ALHHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 195/380 (51%), Gaps = 3/380 (0%)

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +++L  G  +H  A       D++V T +++MY++   ++ AK LF ++  +D V W+ +
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+A+ QSG+P+E+L L   M   G +A+    ++++ + + + +++ GK MH   ++   
Sbjct: 61  IAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANV 120

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           D  +SV  +L+ MY +C     A  +F+ +  K VV+W++MI GY    +   AL +F +
Sbjct: 121 DLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHK 180

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           ++L  +  +  T++ +LPA   +  L+    +HG  +K G  S   V TA+   YAKCG 
Sbjct: 181 LQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGS 240

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  LF       KD ++WN MI+ Y   G     F  + QMK  +++P+++T + +L
Sbjct: 241 LSGAEFLFHRTGC-RKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVL 299

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
            A  +   +  G  +   +    G++        ++++  + G +D + ++  +M  K D
Sbjct: 300 PAVAHLSALRAGMTLHAYVIR-MGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNK-D 357

Query: 606 ARVWGPLLSACKMHSETELA 625
              W  +L+   +H     A
Sbjct: 358 TVSWNVMLAGYAVHGRGSCA 377



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 196/393 (49%), Gaps = 4/393 (1%)

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
            G+  ++ +++ ++  YA  G +  ++Q+F  I   + + +  I+    + G  ++ L +
Sbjct: 17  QGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSL 76

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           ++ M  + +   +      + +C+ +     G+ +H   VK   D    VG ALV  Y K
Sbjct: 77  FRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAK 136

Query: 179 CDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           C G F     +  R   KD+ + WN++I+   Q G+   + E+F  +++     +SGT++
Sbjct: 137 C-GFFALALTLFNRMPCKDVVT-WNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMV 194

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-D 296
            LL +   L  L+ G  +H   +   F  +  V TAL+ MY+K  SL  A+ LF +    
Sbjct: 195 GLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCR 254

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           KD V WN+MI+ Y  SG   ++      M     + ++ T +  + +++ +  +  G  +
Sbjct: 255 KDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTL 314

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           HA V+R G   +  V N LIDMY +C  L+ + KIF  +K K  VSW+ M+ GY  H + 
Sbjct: 315 HAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRG 374

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
             A+ LFS M+   + +D  + IN+L AC + G
Sbjct: 375 SCAIELFSRMQDSEIRLDSFSFINVLSACRHAG 407



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI-TS 93
           +F+LLN   +      IH + II  G      + + LID YA  G LS ++ +F+     
Sbjct: 199 AFALLN---DLDQGSCIHGK-IIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCR 254

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  ++      G        + QM L+++ P   T   V+ + + L    +G  +
Sbjct: 255 KDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTL 314

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA V+++GF S   VG+ L++ Y KC     +EK   + K KD  S WN +++    +G+
Sbjct: 315 HAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVS-WNVMLAGYAVHGR 373

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
              + ELF  M+      DS + IN+L +      +  GR +
Sbjct: 374 GSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKI 415


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/638 (31%), Positives = 353/638 (55%), Gaps = 20/638 (3%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G ++ +  VF++I  PNS+ +  I+   ++ G Y + L  Y++M L+ + P    +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRK 193
              I  CS   D   G+ +HA +++     FD + G AL+  Y +C      +  + ++ 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARC-----RDLELARKT 116

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLM---RMEGAEFDSGTLINLLRSTVEL 246
           F ++  +    WN+LI+   +NG    + ++++ M     EG + D+ T  + L +   +
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVV 176

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
             +  GR +    V S +  D  V  AL++MYSK  SLE A+ +FD++ ++D + WN MI
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S Y + G   ++LEL   M  +  + ++ T I  +++ + ++++E G+ +H  V  +G +
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYE 296

Query: 367 YQVSVHNSLIDMYCECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
             + + N L++MY +C   L  AR++F+ ++T+ V++W+ +I  YV + Q+ +AL +F +
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+LE V  + +T+ N+L AC  +GA    K +H         +   +  ++   Y +CG 
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGS 416

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           ++    +F    I  K +++W+++I+AYA+HG      + + ++ Q  +  D +T +  L
Sbjct: 417 LDDTVGVF--AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           +AC + G+++EG   F  M   +G  P   H+  MV+LL RAG ++ A  L+ DMPF PD
Sbjct: 475 SACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPD 534

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV-LLSNIYAAAGKWNGVAKMRT 664
           A  W  LLS CK+H++T+ A   A+KL  +E E+  + V LLSN+YA AG+W+ V K R 
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN 594

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
               R  +K PGCS+IEI   VHEF A D+SHP+ + I
Sbjct: 595 ---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELI 629



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 216/382 (56%), Gaps = 13/382 (3%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K  S+ DA  +F  +   + V W ++++A+ ++G  +E+L     MV  G R D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
            + A+   S+ K+++ G+ +HA +L     ++ + +  +LI MY  C DL  ARK FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM---KLEGVEVDFVTIINILPACVNIGALE 452
             KT+V+W+++I GY  +     AL+++ +M     EG++ D +T  + L AC  +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +   ++  G  S S V  A+   Y+KCG +E A ++FD  ++ ++D+I WN+MIS 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFD--RLKNRDVIAWNTMISG 238

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YAK G  +Q  +L+ +M  +D +P+++TF+GLLTAC N   +E+GR I +++KE +GYE 
Sbjct: 239 YAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HGYES 297

Query: 573 SQEHYASMVNLLGR-AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                  ++N+  + +  ++EAR++ + +  + D   W  L+ A   + +   A+   + 
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYGQ---AKDALDI 353

Query: 632 LISMEPEN-AGNYVLLSNIYAA 652
              M+ EN A N + LSN+ +A
Sbjct: 354 FKQMQLENVAPNEITLSNVLSA 375



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 249/510 (48%), Gaps = 32/510 (6%)

Query: 39  LNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           + +C + + L+Q   +HA  +    L  ++IL + LI  YA    L L+++ F+ +    
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQS---MYPAEDTYPFVIRSCSCLLDFISGEK 152
            + +  ++   S+ G++   L +Y+ M  +S   M P   T+   + +CS + D   G +
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQN 211
           I A+ V  G+ S   V +AL+  Y KC G  E+ + +  R K +D+ + WN++IS   + 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKC-GSLESARKVFDRLKNRDVIA-WNTMISGYAKQ 242

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G + ++ ELF+ M     + +  T I LL +   L+ LE GR +H       +  DL + 
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIG 302

Query: 272 TALLSMYSKL-ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             LL+MY+K  +SLE+A+ +F+++  +D + WNI+I AY Q G  K++L++   M     
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             +  T    +S+ + +     GK +HA +        V + NSL++MY  C  L+    
Sbjct: 363 APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVG 422

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F +++ K++VSWS++I  Y  H  S   L  F E+  EG+  D VT+++ L AC     
Sbjct: 423 VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACS---- 478

Query: 451 LEHVKYLHGYSMKLGLNSLSSV--NTAIFISYAKCGC----IEMAGELFDEEKIDSK--- 501
                  HG  +K G+ S  S+  +  +   Y    C    +  AG L   E +      
Sbjct: 479 -------HGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPF 531

Query: 502 --DIITWNSMISAYAKHGDWSQCFKLYTQM 529
             D + W S++S    H D  +  ++  ++
Sbjct: 532 LPDAVAWTSLLSGCKLHNDTKRAARVADKL 561


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 327/573 (57%), Gaps = 6/573 (1%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           +I+  SCL      + IHA +++LG D    + + ++ F         + + + Q K  +
Sbjct: 16  LIQGFSCLKHL---KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPN 72

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           +   +N++I   V N   ++S E++  MR EG   DS T   +L++   +   ELG  +H
Sbjct: 73  I-FLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMH 131

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + V +    D  V  +L+++Y+K   +++A  +FD + DK+   W   IS Y   G  +
Sbjct: 132 SLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCR 191

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E++++   ++  G R D F+ +  +S+     ++  G+ +   +  NG    V V  +L+
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALV 251

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           D Y +C ++  AR +FD +  K +VSWSSMI+GY ++    EAL LF +M  EG++ D  
Sbjct: 252 DFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            ++ +L +C  +GALE   +             S + TA+   YAKCG ++ A E+F   
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVF--R 369

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            +  KD + WN+ IS  A  G       L+ QM++S ++PD  TF+GLL AC +AGLVEE
Sbjct: 370 GMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEE 429

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           GR  F  M+  +   P  EHY  MV+LLGRAG +DEA +L+K MP + +A VWG LL  C
Sbjct: 430 GRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGC 489

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           ++H +T+L E+  +KLI++EP ++GNYVLLSNIYAA+ KW   AK+R+ + +RG+KK PG
Sbjct: 490 RLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPG 549

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            SWIE+  +VH+F   D SHP ++ IY  LG L
Sbjct: 550 YSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGEL 582



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 238/479 (49%), Gaps = 14/479 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +HL+ IHA  + L GL ++  L + ++    N G  + S ++ +    PN  L+ T+++ 
Sbjct: 24  KHLKHIHAALLRL-GLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           L     +++++ +Y  M  + + P   T+PFV+++C+ +LD   G K+H+ VVK G ++ 
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 166 DDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
             V  +L+  Y KC   D  F+    +  + F    + W + IS  V  GK  ++ ++F+
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNF----ASWTATISGYVGVGKCREAIDMFR 198

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            +   G   DS +L+ +L +      L  G  +      +   +++ V TAL+  Y K  
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCG 258

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           ++E A+ +FD M +K+ V W+ MI  Y  +G PKE+L+L   M+  G + D +  +  + 
Sbjct: 259 NMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLC 318

Query: 343 SISTMKNIEWGKQMHANVLRNGSDY--QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           S + +  +E G    A+ L NG+++     +  +LIDMY +C  ++ A ++F  ++ K  
Sbjct: 319 SCARLGALELGDW--ASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDR 376

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHG 459
           V W++ I G        +AL LF +M+  G++ D  T + +L AC + G +E   +Y + 
Sbjct: 377 VVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNS 436

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                 L         +     + GC++ A +L     +++  I+ W +++     H D
Sbjct: 437 MECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIV-WGALLGGCRLHRD 494


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/564 (35%), Positives = 314/564 (55%), Gaps = 7/564 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G+++HA V+KLG  +   + + ++  Y+KC    +  K   +   K++ S WN+LI   V
Sbjct: 92  GKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVS-WNTLICGVV 150

Query: 210 QNGKS----EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +           F  F+ M +E    +  TL  LLR+++EL  + + R +HC  + S F 
Sbjct: 151 EGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD 210

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  V +AL+  Y+K   +++A+  FD++S +D V+WN+M+S Y  +G   ++  +   M
Sbjct: 211 SNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLM 270

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G + D FT  + ++S   + +   GKQ+H  ++R   D  V V ++L+DMY + E++
Sbjct: 271 RLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENI 330

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             ARK FD +  K +VSW++M  GY  H    E +RL  EM       D + + +IL +C
Sbjct: 331 EDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSC 390

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            N+ A   V  +H Y ++ G  +  S+  A+  +Y+KCG I  A + F    +   DII+
Sbjct: 391 GNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSF--SSVAEPDIIS 448

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W S++ AYA HG   Q   ++ ++  S+VRPD + FLG+L+AC + G V EG   F  M 
Sbjct: 449 WTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMI 508

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             Y   P  EHY S+++LLGRAG +DEA  L+  MP +P +   G  L ACK++    LA
Sbjct: 509 NVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVYRNVGLA 568

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
              +EKL  MEP   G Y L+SN+YA+ G W  VA++R  +R+R   K PGCSW+E    
Sbjct: 569 RWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWMETAGE 628

Query: 686 VHEFWAADQSHPQADAIYTILGIL 709
           VH F + D++HP+A  +Y +L +L
Sbjct: 629 VHTFVSRDKTHPRAVQVYGMLDLL 652



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 169/608 (27%), Positives = 265/608 (43%), Gaps = 88/608 (14%)

Query: 32  ATHSFSLLNLCENPQHLQQIHARYIILHG---LHQNLILSSNLIDSYANLGLLSLSQQV- 87
           +THSFS         H  +I A+   LHG   LH ++I             LLSL  QV 
Sbjct: 71  STHSFS--------SHALKISAKLGFLHGGKQLHAHVI-------KLGXCNLLSLQNQVL 115

Query: 88  --------FN------------SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
                   FN            ++ S N+L+ G +  N  KF         ++QM L+ M
Sbjct: 116 HVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGN-CKFALVRLGFHCFRQMVLEMM 174

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            P   T   ++R+   L D     ++H  ++K GFDS   VG ALV+ Y K   G  +E 
Sbjct: 175 APNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKF--GLVDEA 232

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              Q  F ++ SR    WN ++S    NG   K+F +FKLMR+EG + D  T  +++ S 
Sbjct: 233 ---QSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSC 289

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L S  LG+ VH + +   F  D+ V +AL+ MYSK  ++EDA+  FD M  K+ V W 
Sbjct: 290 GVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWT 349

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            M   Y Q G  KE + LL  M+R     D     + +SS   +       Q+HA V+ N
Sbjct: 350 TMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVEN 409

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +  +S+ N+L+  Y +C  +  A + F SV    ++SW+S++  Y  H  S + + +F
Sbjct: 410 GFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVF 469

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            ++    V  D V  + +L AC + G +  ++ LH +++ + +  +              
Sbjct: 470 EKILSSNVRPDKVAFLGVLSACAHGGFV--LEGLHYFNLMINVYQI-------------- 513

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
                   + D E         + S+I    + G   +   L T M        L  FLG
Sbjct: 514 --------MPDSEH--------YTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLG 557

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMPF 602
                 N GL           ++ +  EP++   Y+ M N+    GH  +   + K M  
Sbjct: 558 ACKVYRNVGLARWAS------EKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRE 611

Query: 603 KPDARVWG 610
           + D +V G
Sbjct: 612 RCDFKVPG 619



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 183/399 (45%), Gaps = 8/399 (2%)

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L+ + +L  L  G+ +H   +    C  LS+   +L +Y K     D   +FD+M  K+ 
Sbjct: 80  LKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNV 139

Query: 300 VVWNIMISAYYQS----GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           V WN +I    +        +        MV      +  T    + +   + ++   +Q
Sbjct: 140 VSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQ 199

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H  +L++G D    V ++L+D Y +   ++ A+  FD V ++ +V W+ M+  Y  +  
Sbjct: 200 LHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGV 259

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +A  +F  M+LEGV+ D  T  +++ +C  +G+    K +HG  ++L  +    V +A
Sbjct: 260 QGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASA 319

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+K   IE A + FD   +  K+I++W +M   Y +HGD  +  +L  +M +    
Sbjct: 320 LVDMYSKNENIEDARKAFDGMJV--KNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTY 377

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +    +L++C N     E   +   + E+ G+E       ++V+   + G +  A +
Sbjct: 378 PDELALASILSSCGNLSATSEVVQVHAYVVEN-GFEAFLSIANALVSAYSKCGSIGSAFQ 436

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
               +  +PD   W  L+ A   H  ++      EK++S
Sbjct: 437 SFSSVA-EPDIISWTSLMGAYAFHGLSKQGVDVFEKILS 474


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 214/668 (32%), Positives = 363/668 (54%), Gaps = 12/668 (1%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +     H+N+I ++ +I  Y   G LS ++ +F+S+   + + +  ++   ++   +
Sbjct: 61  ARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRF 120

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            +   ++  M    M P   T   ++   +         ++H  VVK+G+DS   V ++L
Sbjct: 121 LEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSL 180

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEG 228
           ++ Y K         G+    FK +  +    +N+L++   + G +  +  LF  M+  G
Sbjct: 181 LDSYCK-----TRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLG 235

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T   +L + +++  +E G+ VH   V  +F  ++ V  ALL  YSK   + +A+
Sbjct: 236 FRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEAR 295

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LF +M + D + +N++I+    +G  +ESLEL   +  + F    F     +S  +   
Sbjct: 296 KLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSL 355

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N+E G+Q+H+  +   +  +V V NSL+DMY +C+    A +IF  +  ++ V W+++I 
Sbjct: 356 NLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALIS 415

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GYV      + L+LF EM    +  D  T  +IL AC N+ +L   K LH   ++ G  S
Sbjct: 416 GYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLS 475

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
                +A+   YAKCG I+ A ++F E  +  ++ ++WN++ISAYA++GD     + + Q
Sbjct: 476 NVFSGSALVDMYAKCGSIKEALQMFQEMPV--RNSVSWNALISAYAQNGDGGHALRSFEQ 533

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M  S ++P+ ++FL +L AC + GLVEEG   F  M + Y  EP +EHYASMV++L R+G
Sbjct: 534 MIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSG 593

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP-ENAGNYVLLS 647
             DEA +L+  MPF+PD  +W  +L++C++H   ELA   A++L +M+   +A  YV +S
Sbjct: 594 RFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMS 653

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           NIYAAAG+W+ V K++  LR+RG++K P  SW+EI +  H F A D SHPQ   I   L 
Sbjct: 654 NIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLD 713

Query: 708 ILELEIME 715
            LE ++ E
Sbjct: 714 ELEKQMEE 721



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 251/505 (49%), Gaps = 10/505 (1%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           H+T     S     E+   + Q+H  +++  G    L++ ++L+DSY     L L+  +F
Sbjct: 139 HITLATLLSGFTEFESVNEVAQVHG-HVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLF 197

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
             +   +++ +  +L   SK G     + ++ +M      P+E T+  V+ +   + D  
Sbjct: 198 KHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIE 257

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G+++H+ VVK  F     V +AL++FY K D   E  K   +    D  S +N LI+  
Sbjct: 258 FGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGIS-YNVLITCC 316

Query: 209 VQNGKSEKSFELFK---LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
             NG+ E+S ELF+     R +  +F   TL+++  +++   +LE+GR +H  A+V+D  
Sbjct: 317 AWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSL---NLEMGRQIHSQAIVTDAI 373

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            ++ V  +L+ MY+K     +A  +F  ++ +  V W  +IS Y Q G  ++ L+L + M
Sbjct: 374 SEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM 433

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
            R+   AD  T  + + + + + ++  GKQ+H+ ++R+G    V   ++L+DMY +C  +
Sbjct: 434 HRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSI 493

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A ++F  +  +  VSW+++I  Y  +     ALR F +M   G++ + V+ ++IL AC
Sbjct: 494 KEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCAC 553

Query: 446 VNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
            + G +E  ++Y +  +    L        ++     + G  + A +L      +  D I
Sbjct: 554 SHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEP-DEI 612

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQM 529
            W+S++++   H +     K   Q+
Sbjct: 613 MWSSILNSCRIHKNQELAIKAADQL 637



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 141/302 (46%), Gaps = 37/302 (12%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK----------------------- 390
           + + A++++ G D      N  +  + +  DL  ARK                       
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 391 --------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
                   +FDS+  ++VV+W+ +I GY  H++ LEA  LF++M   G+  D +T+  +L
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLL 146

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
                  ++  V  +HG+ +K+G +S   V  ++  SY K   + +A  LF  + +  KD
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLF--KHMAEKD 204

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            +T+N++++ Y+K G       L+ +M+    RP   TF  +LTA +    +E G+ +  
Sbjct: 205 NVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHS 264

Query: 563 -EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             +K ++ +     +  ++++   +   + EAR+L  +MP + D   +  L++ C  +  
Sbjct: 265 FVVKCNFVWNVFVAN--ALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGR 321

Query: 622 TE 623
            E
Sbjct: 322 VE 323


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/644 (32%), Positives = 356/644 (55%), Gaps = 3/644 (0%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G H +L + S LI  YA+ G +  +++VF+ +   +++L+  +L    K G++   +  +
Sbjct: 175 GFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTF 234

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M          TY  ++  C+    F  G ++H  V+  GF+    V + LV  Y KC
Sbjct: 235 CGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKC 294

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
              F+  K        D  + WN LI+  VQNG ++++  LF  M   G + DS T  + 
Sbjct: 295 GNLFDARKLFNTMPQTDTVT-WNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASF 353

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S +E  SL   + VH   V      D+ + +AL+ +Y K   +E A+ +F + +  D 
Sbjct: 354 LPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDV 413

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
            V   MIS Y   G   +++     +++ G   +  T  + + + + +  ++ GK++H +
Sbjct: 414 AVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCD 473

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +L+   +  V+V +++ DMY +C  L+ A + F  +     + W+SMI  +  + +   A
Sbjct: 474 ILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMA 533

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + LF +M + G + D V++ + L +  N+ AL + K +HGY ++   +S + V +A+   
Sbjct: 534 VDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDM 593

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG + +A  +F+   +  K+ ++WNS+I+AY  HG   +C  L+ +M ++ V PD +
Sbjct: 594 YSKCGKLALARCVFN--LMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHV 651

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL +++AC +AGLV EG   F  M   YG     EHYA MV+L GRAG + EA + +K 
Sbjct: 652 TFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKS 711

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPF PDA VWG LL AC++H   ELA+L +  L+ ++P+N+G YVLLSN++A AG+W  V
Sbjct: 712 MPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSV 771

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
            K+R  ++++G++K PG SWI++    H F AA+ +HP++  IY
Sbjct: 772 LKVRRLMKEKGVQKIPGYSWIDVNGGTHMFSAAEGNHPESVEIY 815



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 193/693 (27%), Positives = 331/693 (47%), Gaps = 36/693 (5%)

Query: 25  QTRPHMTATHSFSLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           +T+ ++T T   SL   C +    Q  +Q+H + II+ G+     LSS ++  Y   G +
Sbjct: 38  ETQDYLT-TQLESLFRACSDASVVQQARQVHTQ-IIVGGMSDVCALSSRVLGLYVLCGRI 95

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           S    +F  +   N+L +  +++ L   G ++  LL Y +M   ++ P + T+P+VI++C
Sbjct: 96  SDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR- 200
             L +      +H     LGF     VG AL++ Y   D G+  +    +R F +L  R 
Sbjct: 156 GGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLY--ADNGYICDA---RRVFDELPQRD 210

Query: 201 ---WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              WN ++   V++G    +   F  MR   +  +S T   +L          LG  VH 
Sbjct: 211 TILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHG 270

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           + + S F  D  V   L++MYSK  +L DA+ LF+ M   D V WN +I+ Y Q+GF  E
Sbjct: 271 LVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDE 330

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +  L   M+ +G + D  T  + + SI    ++   K++H+ ++R+   + V + ++LID
Sbjct: 331 AAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALID 390

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           +Y +  D+  ARKIF       V   ++MI GYV H  +++A+  F  +  EG+  + +T
Sbjct: 391 IYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLT 450

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + ++LPAC  + AL+  K LH   +K  L ++ +V +AI   YAKCG +++A E F   +
Sbjct: 451 MASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFF--RR 508

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +   D I WNSMIS+++++G       L+ QM  S  + D ++    L++  N   +  G
Sbjct: 509 MSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYG 568

Query: 558 RIIFKEMKESYGYE-----PSQEHYAS-MVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
                  KE +GY       S    AS ++++  + G +  AR +   M  K +   W  
Sbjct: 569 -------KEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVS-WNS 620

Query: 612 LLSACKMHS-ETELAELTAEKL-ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           +++A   H    E  +L  E L   + P++    V++S    A     G+       R+ 
Sbjct: 621 IIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREY 680

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           G+    G        +V  +  A + H   DAI
Sbjct: 681 GI----GARMEHYACMVDLYGRAGRLHEAFDAI 709


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 225/665 (33%), Positives = 350/665 (52%), Gaps = 38/665 (5%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL 116
           I  G   ++  ++N+I  YA  G + ++ ++F+  +  +++ + T++     FG +E  L
Sbjct: 26  IKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETAL 85

Query: 117 LVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
              K M       A D Y F  +++  +C+     G+++H+ +VK+G++     G AL++
Sbjct: 86  EFLKSMKRYGF--AVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLD 143

Query: 175 FYIKCD---GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            Y KC+     FE  K +  R        WN+LIS     G    +F L   M +EG E 
Sbjct: 144 MYAKCERVEDAFEVFKSINIRN----SVTWNALISGYAHVGDRGTAFWLLDCMELEGVEI 199

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D GT   LL    +    +L   VH   V      D +V  A+++ YS+  S+EDA+ +F
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 292 D-KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           D  +  +D V WN M++AY  +   +E+ EL + M   GF  D++T  + +S+     + 
Sbjct: 260 DGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQ 319

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC--EDLNCARKIFDSVKTKTVVSWSSMIK 408
             GK +H  V++ G ++ V + NSLI MY +   + ++ A  IF+S++ K  VSW+S++ 
Sbjct: 320 GQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILT 379

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G+     S +AL+ F  M+ + V +D      +L +C ++  L+  + +H          
Sbjct: 380 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVH---------- 429

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
                         CG IE A + FD    DS   I WNS+I  YA+HG       L+  
Sbjct: 430 ------------VLCGVIEDARKSFDATPKDSS--IAWNSLIFGYAQHGRGKIALDLFFL 475

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK   V+ D ITF+ +LTAC + GLVEEG    K M+  YG  P  EHYA M++LLGRAG
Sbjct: 476 MKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAG 535

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +DEA+ L++ MPF+PDA VW  LL AC+   + ELA   A  L+ +EPE    YVLLS+
Sbjct: 536 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSS 595

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           ++    +WN  A ++  +++RG+KK PG SWIE+   VH F A D+SHP  + IY  LG 
Sbjct: 596 MFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVHSFNAEDRSHPNCEEIYLRLGD 655

Query: 709 LELEI 713
           L  EI
Sbjct: 656 LMEEI 660



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 168/317 (52%), Gaps = 1/317 (0%)

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           S     +L    + HC+A+ S     +     ++S Y+K   +  A  +FD+ S +D V 
Sbjct: 8   SQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVS 67

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN MI+     G  + +LE L  M R GF  D ++  + +  ++ +  +E G+Q+H+ ++
Sbjct: 68  WNTMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIV 127

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           + G +  V   ++L+DMY +CE +  A ++F S+  +  V+W+++I GY        A  
Sbjct: 128 KIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFW 187

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           L   M+LEGVE+D  T   +L    +    +    +H   +K GL S ++V  AI  +Y+
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG IE A  +FD   I+++D++TWNSM++AY  +    + F+L+ +M+     PD+ T+
Sbjct: 248 ECGSIEDAERVFD-GAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTY 306

Query: 542 LGLLTACVNAGLVEEGR 558
             +++A        +G+
Sbjct: 307 TSVISAAFEXAHQGQGK 323



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 201/410 (49%), Gaps = 33/410 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+H+  I+  G   N+   S L+D YA    +  + +VF SI   NS+ +  ++   + 
Sbjct: 120 QQVHS-MIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAH 178

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+      +   M L+ +   + T+  ++             ++HA++VK G  S   V
Sbjct: 179 VGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTV 238

Query: 169 GDALVEFYIKCDGGFENEK----GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            +A++  Y +C G  E+ +    G I+   +DL + WNS+++  + N + E++FELF  M
Sbjct: 239 CNAIITAYSEC-GSIEDAERVFDGAIET--RDLVT-WNSMLAAYLVNNQEEEAFELFLEM 294

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY--SKLA 282
           ++ G E D  T  +++ +  E      G+ +H + +       + ++ +L++MY  S   
Sbjct: 295 QVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSK 354

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           S+++A  +F+ + +KD V WN +++ + QSG  +++L+    M       D +   A + 
Sbjct: 355 SMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLR 414

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           S S +  ++ G+Q+H  VL                    C  +  ARK FD+    + ++
Sbjct: 415 SCSDLATLQLGQQVH--VL--------------------CGVIEDARKSFDATPKDSSIA 452

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           W+S+I GY  H +   AL LF  MK   V++D +T + +L AC +IG +E
Sbjct: 453 WNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVE 502



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL      H  ++K G  +       I   YAKCG I +A ++FDE     +D ++WN+M
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDE--TSQRDAVSWNTM 71

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+     G++    +    MK+     D  +F  +L      G VE G+ +   M    G
Sbjct: 72  IAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQV-HSMIVKIG 130

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           YE +    ++++++  +   +++A E+ K +  + ++  W  L+S 
Sbjct: 131 YEGNVFAGSALLDMYAKCERVEDAFEVFKSINIR-NSVTWNALISG 175


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 208/672 (30%), Positives = 375/672 (55%), Gaps = 5/672 (0%)

Query: 54  RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           + I+  G   +L + + L+D Y+ +GLLS ++QVF+ +   + + + +++   S  G YE
Sbjct: 130 KQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           + L +Y ++    + P   T   V+ + + LL    G+ +H   +K G +S   V + L+
Sbjct: 190 EALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLL 249

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
             Y+K     +  +   +   +D    +N++I   ++    E+S ++F L  ++  + D 
Sbjct: 250 AMYLKFSRPTDARRVFDEMVVRD-SVTYNTMICGYLKLEMVEESVKMF-LENLDQFKPDI 307

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T+ ++L +   L+ L L + ++   + + F  + +V   L+ +Y+K   +  A+ +F+ 
Sbjct: 308 LTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNS 367

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  KD V WN +IS Y QSG   E+++L   M+    +AD  T +  +S  + + ++++G
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFG 427

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           K +H+N +++G    +SV N+LIDMY +C ++  + KIF+S+ T   V+W+++I   V  
Sbjct: 428 KGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRF 487

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
                 L++ ++M+   V  D  T +  LP C ++ A    K +H   ++ G  S   + 
Sbjct: 488 GDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIG 547

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            A+   Y+KCGC+E +  +F  E++  +D++TW  MI AY  +G+  +  + +  M++S 
Sbjct: 548 NALIEMYSKCGCLESSFRVF--ERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSG 605

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + PD + F+ L+ AC ++GLVE+G   F++MK  Y  +P  EHYA +V+LL R+  + +A
Sbjct: 606 IVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKA 665

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
            E ++ MP +PDA +W  +L AC+   + E AE  + ++I + P++ G  +L SN YAA 
Sbjct: 666 EEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAAL 725

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELE 712
            KW+ V+ +R  +RD+ +KK PG SWIEIGK VH F + D S PQ++AI+  L IL  L 
Sbjct: 726 RKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLM 785

Query: 713 IMEGRRESSEEL 724
             EG    S E+
Sbjct: 786 AKEGYIPDSREV 797



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 176/618 (28%), Positives = 325/618 (52%), Gaps = 13/618 (2%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-SPNSL 97
           L+   N   L++IHA  I L GL  +   S  LID Y++    + S  VF  ++ + N  
Sbjct: 14  LSSSSNLNELRRIHALVISL-GLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVY 72

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           ++ +I++  SK G + K L  Y ++    + P + T+P VI++C+ L D   G+ ++ Q+
Sbjct: 73  IWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQI 132

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +++GF+S   VG+ALV+ Y +        +   +   +DL S WNSLIS    +G  E++
Sbjct: 133 LEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVS-WNSLISGYSSHGYYEEA 191

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            E++  +R      DS T+ ++L +   L  ++ G+ +H   + S       VN  LL+M
Sbjct: 192 LEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAM 251

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K +   DA+ +FD+M  +D V +N MI  Y +    +ES+++ +  +   F+ D+ T 
Sbjct: 252 YLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTV 310

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + +   ++++   K ++  +LR G   + +V N LID+Y +C D+  AR +F+S++ 
Sbjct: 311 TSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMEC 370

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K  VSW+S+I GY+     +EA++LF  M +   + D +T + ++     +  L+  K L
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGL 430

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H   +K G+    SV+ A+   YAKCG +  + ++F+   + + D +TWN++ISA  + G
Sbjct: 431 HSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNS--MGTLDTVTWNTVISACVRFG 488

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           D++   ++ TQM+++ V PD+ TFL  L  C +      G+ I   +   +GYE   +  
Sbjct: 489 DFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIG 547

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
            +++ +  + G ++ +  + + M  + D   W  ++ A  M+ E E A    E  + ME 
Sbjct: 548 NALIEMYSKCGCLESSFRVFERMS-RRDVVTWTGMIYAYGMYGEGEKA---LESFVDMEK 603

Query: 638 EN--AGNYVLLSNIYAAA 653
                 + V ++ IYA +
Sbjct: 604 SGIVPDSVVFIALIYACS 621



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 244/485 (50%), Gaps = 13/485 (2%)

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ--RK 193
           F+ R+ S   +     +IHA V+ LG D  D     L++ Y      F      +   R+
Sbjct: 9   FISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKY----SHFRAPASSLSVFRR 64

Query: 194 FKDLKSR--WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
               K+   WNS+I    +NG   K+ E +  +R      D  T  +++++   L   E+
Sbjct: 65  VSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEM 124

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G +V+   +   F  DL V  AL+ MYS++  L  A+ +FD+M  +D V WN +IS Y  
Sbjct: 125 GDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSS 184

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
            G+ +E+LE+   +  S    D FT  + + + + +  ++ G+ +H   L++G +    V
Sbjct: 185 HGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVV 244

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
           +N L+ MY +      AR++FD +  +  V++++MI GY+  +   E++++F E  L+  
Sbjct: 245 NNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQF 303

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D +T+ ++L AC ++  L   KY++ Y ++ G    S+V   +   YAKCG +  A +
Sbjct: 304 KPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARD 363

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F+   ++ KD ++WNS+IS Y + GD  +  KL+  M   + + D IT+L L++     
Sbjct: 364 VFNS--MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRL 421

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             ++ G+ +     +S G         +++++  + G + ++ ++   M    D   W  
Sbjct: 422 ADLKFGKGLHSNGIKS-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNT 479

Query: 612 LLSAC 616
           ++SAC
Sbjct: 480 VISAC 484


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/506 (35%), Positives = 301/506 (59%), Gaps = 3/506 (0%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N++I    ++    ++  L+  M   G   D+ T   +L +   L +++LGR  HC  + 
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           + F  DL V  AL+  Y    S   A  +FD+ + +D V WNIMI+A+   G  +++ +L
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDL 199

Query: 322 LMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L  M +    R D  T ++ V + + + N+E GK +H+     G D  + V+N+++DMYC
Sbjct: 200 LDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC 259

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C+D+  A+++F+ ++ K V+SW+SM+ G        EAL LF +M+L  +E+D +T++ 
Sbjct: 260 KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVG 319

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC   GAL+  KY+H    K  +N    + TA+   YAKCG I++A ++F   ++  
Sbjct: 320 VLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV-- 377

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +++ TWN++I   A HG       L+ QM+   + PD +TF+ LL AC +AGLV+EG  +
Sbjct: 378 RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAM 437

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F+ MK  +  EP  EHY  +V+LL RA  +D+A   +++MP K ++ +W  LL AC+   
Sbjct: 438 FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGG 497

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             +LAE    ++I +EP++ G YV+LSN+YA   +W+   K+R  ++++G++KTPGCSWI
Sbjct: 498 HFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWI 557

Query: 681 EIGKLVHEFWAADQSHPQADAIYTIL 706
           E+  ++H+F A D+SH Q + IY ++
Sbjct: 558 ELNGMIHQFVAGDRSHLQTEQIYAMI 583



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 184/348 (52%), Gaps = 5/348 (1%)

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           S    L  A+ LF +M + D  + N MI  Y +S  P E++ L   MV  G   D +T  
Sbjct: 56  SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             +++ + +  ++ G++ H  VL+NG    + V N+LI  Y  C    CA  +FD    +
Sbjct: 116 FVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVR 175

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYL 457
            VV+W+ MI  ++    S +A  L  EM KL+ +  D VT+++++PAC  +G LE  K+L
Sbjct: 176 DVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFL 235

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H YS +LGL+    VN AI   Y KC  IE A E+F+  +I  KD+++W SM+S  AK G
Sbjct: 236 HSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFN--RIREKDVLSWTSMLSGLAKSG 293

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
            + +   L+ +M+ + +  D IT +G+L+AC   G +++G+ I   + + +         
Sbjct: 294 YFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYI-HLLIDKFEINCDLVLE 352

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            ++V++  + G +D A ++ + M  + +   W  L+    MH   E A
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGEDA 399



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 221/416 (53%), Gaps = 9/416 (2%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSITSPNSLLY 99
           C +    +Q HA  +  H LH N + SS LI   + ++ G L+ ++++F  + +P+  + 
Sbjct: 21  CTSISKTKQAHALLLRTHLLH-NPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFIC 79

Query: 100 GTILKNLSKF-GEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQV 157
            T+++  ++    YE   L Y    ++   P ++ TYPFV+ +C+ L     G + H +V
Sbjct: 80  NTMIRGYARSQNPYEAVSLYY--FMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEV 137

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +K GF S   V +AL++FY  C G F     +           WN +I+  +  G SEK+
Sbjct: 138 LKNGFGSDLFVINALIQFYHNC-GSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 218 FELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           F+L  ++ +++    D  T+++L+ +  +L +LE G+ +H  +      ++L VN A+L 
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILD 256

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K   +E A+ +F+++ +KD + W  M+S   +SG+ +E+L L   M  +    D  T
Sbjct: 257 MYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEIT 316

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            +  +S+ +    ++ GK +H  + +   +  + +  +L+DMY +C  ++ A ++F  ++
Sbjct: 317 LVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 376

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            + V +W+++I G   H    +A+ LF +M+ + +  D VT I +L AC + G ++
Sbjct: 377 VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVD 432



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 173/357 (48%), Gaps = 8/357 (2%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           ++ +G   +L + + LI  Y N G    +  VF+  T  + + +  ++      G  EK 
Sbjct: 137 VLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 116 LLVYKQMA-LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
             +  +M  L ++ P E T   ++ +C+ L +   G+ +H+   +LG D    V +A+++
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILD 256

Query: 175 FYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
            Y KCD   E+ + +  R + KD+ S W S++S   ++G  +++  LF+ M++   E D 
Sbjct: 257 MYCKCDD-IESAQEVFNRIREKDVLS-WTSMLSGLAKSGYFQEALALFQKMQLNKIELDE 314

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            TL+ +L +  +  +L+ G+ +H +    +   DL + TAL+ MY+K  S++ A  +F +
Sbjct: 315 ITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRR 374

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  ++   WN +I      G  ++++ L   M       D  T IA + + S    ++ G
Sbjct: 375 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEG 434

Query: 354 KQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMI 407
             M    ++N    +  +  +  ++D+ C    ++ A    +++  K   V W++++
Sbjct: 435 LAMF-QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 490


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 336/581 (57%), Gaps = 29/581 (4%)

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           ++SC+   +   G+++H+ ++  GF        +L+  Y KC      + G     F D 
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKC-----GQMGEAILVFYDP 72

Query: 198 KSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
                   +N++IS  V NG + K F+ +K MR+EG   D  T   ++R+  E+  +E+ 
Sbjct: 73  CHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEV--MEVK 130

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           +I  C+  +     D+ V +AL++ Y K  S+EDA+ +F ++S +D V+WN MI+ Y + 
Sbjct: 131 KIHGCLLKMG-LELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKI 189

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G   E+LE+   M   G     FT    +S  ++  +++ GK +H  V++ G D  VSV 
Sbjct: 190 GCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVS 249

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE---ALRLFSEMKLE 429
           N+LIDMY +C+ +  A  IF+ +  K + SW+S+I     H+Q  +    LRLF +M   
Sbjct: 250 NALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIIS---VHEQCGDHDGTLRLFDKMLGS 306

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--------VNTAIFISYA 481
           G+  D VTI  +LPAC ++ AL H + +HGY +  GL             V+ A+   YA
Sbjct: 307 GILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYA 366

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  A ++FD   +  KD+ +WN MI  Y  HG   +   +++QM +++ +P+ +T 
Sbjct: 367 KCGSMNNALKIFDS--MSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTL 424

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L+AC +AG V  GR+   +M+ ++G  P+ EHY  ++++LGRAGH+++A E+V+ MP
Sbjct: 425 VGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMP 484

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            + +  VW  LL AC++H   ELAE+ A +++ +EPE+ G+YVL+SN+Y   G++  V +
Sbjct: 485 IQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLE 544

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           +R  ++++ +KKTPGCSWIE+   VH F   D++H + +A+
Sbjct: 545 VRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDRTHSELNAL 585



 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/505 (27%), Positives = 253/505 (50%), Gaps = 27/505 (5%)

Query: 31  TATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
             T   + L  C + Q+L   +Q+H+  +I +G   +    ++LI+ Y+  G +  +  V
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHS-LMITYGFSPSPPSITSLINMYSKCGQMGEAILV 68

Query: 88  F-NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           F +     N   Y  I+      G   K    YK+M L+ + P + T+P V+R+C  +++
Sbjct: 69  FYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVME 128

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WN 202
               +KIH  ++K+G +    VG ALV  Y+K +G  E+     Q+ F +L  R    WN
Sbjct: 129 V---KKIHGCLLKMGLELDVFVGSALVNTYLK-NGSMEDA----QKVFGELSIRDVVLWN 180

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           ++I+   + G  +++ E+F+ M ++G      T+  +L        L+ G+ VH + +  
Sbjct: 181 AMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKM 240

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            +   +SV+ AL+ MY K   + DA ++F+ +++KD   WN +IS + Q G    +L L 
Sbjct: 241 GYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLF 300

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL--------RNGSDYQVSVHNS 374
             M+ SG   DL T    + + S +  +  G+++H  ++         NG+   + V N+
Sbjct: 301 DKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNA 360

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           ++DMY +C  +N A KIFDS+  K V SW+ MI GY  H  +LEAL +FS+M     + +
Sbjct: 361 VMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPN 420

Query: 435 FVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
            VT++ +L AC + G + H + +L       G+       T +     + G +E A E+ 
Sbjct: 421 EVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIV 480

Query: 494 DEEKIDSKDIITWNSMISAYAKHGD 518
            +  I +  ++ W +++ A   HG+
Sbjct: 481 QKMPIQANPVV-WRALLGACRLHGN 504


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/662 (30%), Positives = 358/662 (54%), Gaps = 12/662 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+H   + + GL  N+ + + LI+ YA +G +  +  VF+++   N + +  ++   S+
Sbjct: 134 QQVHGVAVRI-GLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQ 192

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+    L ++ +M L  + P        + +CS L     G + H    ++  ++   V
Sbjct: 193 IGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASV 252

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
            +AL++ Y KC     +   + ++ F  +++R    W ++I+  +QN    ++  +F  +
Sbjct: 253 INALIDLYCKC-----SRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQL 307

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
             EG + D     ++L S   L ++  GR VH  A+ ++   D  V  +L+ MY+K   L
Sbjct: 308 SQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHL 367

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
            +A+ +F+ +++ D + +N MI  Y + G    ++++   M     +    T ++ +   
Sbjct: 368 TEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVS 427

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S+   IE  KQ+H  ++++G+   +   +SLID+Y +   +  A+ +F+ +  + +V W+
Sbjct: 428 SSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWN 487

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI G   ++Q  EA++LF+++++ G+  +  T + ++     + ++ H +  H   +K 
Sbjct: 488 AMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKA 547

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G +S   V+ A+   YAKCG I+    LF  E    KD+I WNSMIS YA+HG   +   
Sbjct: 548 GADSDHHVSNALIDMYAKCGFIKEGRLLF--ESTLGKDVICWNSMISTYAQHGQAEEALY 605

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           ++  M  + V P+ +TF+G+L+AC +AGLV+EG   F  MK  Y  EP  EHYAS+VNL 
Sbjct: 606 VFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLF 665

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GR+G +  A+E ++ MP +P A VW  LLSAC +    E+     E  +  +P ++G  V
Sbjct: 666 GRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSV 725

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           L+SNIYA+ G W+   K+R  +   G+ K PG SWIE+ K VH F A  + HP+AD IY+
Sbjct: 726 LMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYS 785

Query: 705 IL 706
           +L
Sbjct: 786 LL 787



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 222/412 (53%), Gaps = 14/412 (3%)

Query: 144 LLDFISGEKIH-------AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFK 195
           LL  ++G+++H       A+ V  G      + + L+  Y K  G   + + +  R   K
Sbjct: 17  LLSCLAGDRLHRLLPLAHARAVVTGALPDLFLANLLLRAYSKL-GRVRDARRLFDRMPHK 75

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLI-NLLRSTVELKSLELGR 253
           +L S W S IS+  Q+G  E +  LF    R  G E  +  L+ + LR+  + +++  G+
Sbjct: 76  NLVS-WGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQ 134

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            VH VAV      ++ V TAL+++Y+K+  ++ A ++FD +  K+ V W  +I+ Y Q G
Sbjct: 135 QVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIG 194

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
               +LEL   M   G R D F   +AVS+ S +  +E G+Q H    R   +   SV N
Sbjct: 195 QGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVIN 254

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +LID+YC+C  L+ ARK+FD ++ + +VSW++MI GY+ +    EA+ +F ++  EG + 
Sbjct: 255 ALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQP 314

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D     +IL +C ++ A+   + +H +++K  L S   V  ++   YAKC  +  A  +F
Sbjct: 315 DVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVF 374

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
             E +   D I++N+MI  Y++ GD +    ++++M+   ++P  +TF+ LL
Sbjct: 375 --EALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLL 424


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 233/719 (32%), Positives = 380/719 (52%), Gaps = 43/719 (5%)

Query: 15  HVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDS 74
           H   L+F  +Q +P++        +NL E     QQ+H  +I           SSN   S
Sbjct: 30  HSPTLKFTQSQPKPNVPHIQQELHINLNET----QQLHGHFIKT---------SSNC--S 74

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y  + L +L  + ++S  + +S L  + +KN       +    +Y  M            
Sbjct: 75  Y-RVPLAAL--ESYSSNAAIHSFLITSYIKNNCPADAAK----IYAYMRGTDTEVDNFVI 127

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-K 193
           P V+++C  +  F+ G+++H  VVK GF     V +AL+  Y +  G     + +  + +
Sbjct: 128 PSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEV-GSLALARLLFDKIE 186

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFK---LMRMEGAEFDSGTLINLLRSTVELKSLE 250
            KD+ S W+++I    ++G  +++ +L +   +MR++ +E     +I++     EL  L+
Sbjct: 187 NKDVVS-WSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIG---MISITHVLAELADLK 242

Query: 251 LGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           LG+ +H   + +  C    V   TAL+ MY K  +L  A+ +FD +S    + W  MI+A
Sbjct: 243 LGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAA 302

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y       E + L + M+  G   +  T ++ V    T   +E GK +HA  LRNG    
Sbjct: 303 YIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLS 362

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           + +  + IDMY +C D+  AR +FDS K+K ++ WS+MI  Y  ++   EA  +F  M  
Sbjct: 363 LVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTG 422

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G+  +  T++++L  C   G+LE  K++H Y  K G+     + T+    YA CG I+ 
Sbjct: 423 CGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDT 482

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A  LF E     +DI  WN+MIS +A HG      +L+ +M+   V P+ ITF+G L AC
Sbjct: 483 AHRLFAEAT--DRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHAC 540

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            ++GL++EG+ +F +M   +G+ P  EHY  MV+LLGRAG +DEA EL+K MP +P+  V
Sbjct: 541 SHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAV 600

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           +G  L+ACK+H   +L E  A++ +S+EP  +G  VL+SNIYA+A +W  VA +R  ++D
Sbjct: 601 FGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKD 660

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
            G+ K PG S IE+  L+HEF   D+ HP A  +Y        E+++  RE  E+  ++
Sbjct: 661 EGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVY--------EMIDEMREKLEDAGYT 711


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 221/675 (32%), Positives = 349/675 (51%), Gaps = 89/675 (13%)

Query: 135 PFVIRSCSCL---LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK---- 187
           PF     SC+   L  I    +HA V+K GF +   + + L++ Y KC G  E+ +    
Sbjct: 21  PFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKC-GSLEDGRQLFD 79

Query: 188 GMIQRK-----------------------FKDLKSR----WNSLISLAVQNGKSEKSFEL 220
            M QR                        F+ +  R    WNS++S   Q+ + E++   
Sbjct: 80  KMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYY 139

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F +M  EG   +  T  + L +   L  +  G  +H +   S    D+ + +AL+ MYSK
Sbjct: 140 FAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSK 199

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             ++ DA+ +FD+M D++ V WN +I+ Y Q+G   E+L++   M+ S    D  T  + 
Sbjct: 200 CGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASV 259

Query: 341 VSSISTMKNIEWGKQMHANV-----LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           +S+ +++  I+ G+++HA V     LRN     + + N+ +DMY +C  +  AR IFDS+
Sbjct: 260 ISACASLSAIKVGQEVHARVVKMDKLRN----DIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 396 KTKTV-------------------------------VSWSSMIKGYVTHDQSLEALRLFS 424
             + V                               VSW+++I GY  + ++ EAL LF 
Sbjct: 316 PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGYSMKLGLNSLSSVNTAIFI 478
            +K E V     T  NIL AC ++  L      HV  L HG+  + G      V  ++  
Sbjct: 376 LLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCGC+E    +F   K+  +D ++WN+MI  +A++G  ++  +L+ +M  S  +PD 
Sbjct: 436 MYVKCGCVEEGYLVF--RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDH 493

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           IT +G+L+AC +AG VEEGR  F  M   +G  P ++HY  MV+LLGRAG ++EA+ +++
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIE 553

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP +PD+ +WG LL+ACK+H    L +  AEKL  +E  N+G YVLLSN+YA  GKW  
Sbjct: 554 EMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGD 613

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRR 718
              +R  +R  G+ K PGCSWI+I    H F   D+SHP+   I+++L IL  E+ + + 
Sbjct: 614 AMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMRQKQD 673

Query: 719 E------SSEELKFS 727
                  SSEE+ +S
Sbjct: 674 HAETGSLSSEEMDYS 688



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 137/540 (25%), Positives = 246/540 (45%), Gaps = 81/540 (15%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +HA  +I  G    + + + LID+YA  G L   +Q+F+ +   N   + +++  L+K G
Sbjct: 42  VHAS-VIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLG 100

Query: 111 -------------------------------EYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
                                            E+ L  +  M  +     E T+   + 
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLS 160

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +CS L D   G +IH+ + K    S   +G ALV+ Y KC  G  N+    Q+ F ++  
Sbjct: 161 ACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKC--GNVNDA---QQVFDEMGD 215

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    WNSLI+   QNG + ++ ++F++M     E D  TL +++ +   L ++++G+ V
Sbjct: 216 RNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEV 275

Query: 256 HCVAVVSDFCK-DLSVNTALLSMYSKLASLEDAKMLFD---------------------- 292
           H   V  D  + D+ ++ A + MY+K + +++A+ +FD                      
Sbjct: 276 HARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAAS 335

Query: 293 ---------KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
                    KM++++ V WN +I+ Y Q+G  +E+L L   + R       +T    + +
Sbjct: 336 TKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKA 395

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQ------VSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + ++  G Q H +VL++G  +Q      + V NSLIDMY +C  +     +F  +  
Sbjct: 396 CADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMME 455

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-Y 456
           +  VSW++MI G+  +    EAL LF EM   G + D +T+I +L AC + G +E  + Y
Sbjct: 456 RDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHY 515

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
               +   G+  L    T +     + G +E A  + +E  +    +I W S+++A   H
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVI-WGSLLAACKVH 574


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 215/665 (32%), Positives = 374/665 (56%), Gaps = 5/665 (0%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
            +P   + +H  +I+ HG   +L   + L+++Y + G L  + ++F+ +   N++ + T+
Sbjct: 17  RDPNAGKSLHC-HILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTL 75

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
            +  S+  ++++   +  ++  +     +  +  +++    +    +   +HA V KLG 
Sbjct: 76  AQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGH 135

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
            +   VG AL++ Y  C       +      FKD+ S W  +++   +N   E S  LF 
Sbjct: 136 QADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVS-WTGMVACYAENYCHEDSLLLFC 194

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR+ G   ++ T+   L+S   L++ ++G+ VH  A+   + +DL V  ALL +Y+K  
Sbjct: 195 QMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSG 254

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAV 341
            + +A+  F++M   D + W++MIS Y QS   KE+LEL   M +S     + FT  + +
Sbjct: 255 EIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVL 314

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + +++  +  G Q+H+ VL+ G D  V V N+L+D+Y +C ++  + K+F     K  V
Sbjct: 315 QACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEV 374

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           +W+++I GYV      +AL LFS M    ++   VT  ++L A  ++ ALE  + +H  +
Sbjct: 375 AWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLT 434

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K   N  S V  ++   YAKCG I+ A   FD  K+D +D ++WN++I  Y+ HG   +
Sbjct: 435 IKTMYNKDSVVANSLIDMYAKCGRIDDARLTFD--KMDKQDEVSWNALICGYSIHGLGME 492

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+  M+QS+ +P+ +TF+G+L+AC NAGL+++GR  FK M + YG EP  EHY  MV
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
            LLGR+G  DEA +L+ ++PF+P   VW  LL AC +H   +L ++ A++++ MEP++  
Sbjct: 553 WLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDA 612

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            +VLLSN+YA A +W+ VA +R  ++ + +KK PG SW+E   +VH F   D SHP    
Sbjct: 613 THVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKL 672

Query: 702 IYTIL 706
           I+ +L
Sbjct: 673 IFAML 677



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 161/330 (48%), Gaps = 3/330 (0%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           DS +  N+L+  +  +    G+ +HC  +      DL     LL+ Y     LEDA  LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D+M   + V +  +   + +S   + +  LL+ + R G+  + F     +  + +M   +
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
               +HA V + G      V  +LID Y  C +++ AR++FD +  K +VSW+ M+  Y 
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    ++L LF +M++ G   +  TI   L +C  + A +  K +HG ++K+  +    
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  A+   Y K G I  A + F+E   D  D+I W+ MIS YA+     +  +L+ +M+Q
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKD--DLIPWSLMISRYAQSDKSKEALELFCRMRQ 299

Query: 532 SD-VRPDLITFLGLLTACVNAGLVEEGRII 560
           S  V P+  TF  +L AC +  L+  G  I
Sbjct: 300 SSVVVPNNFTFASVLQACASLVLLNLGNQI 329


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 218/663 (32%), Positives = 357/663 (53%), Gaps = 12/663 (1%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLG----LLSLSQQVFNSITSPNSLLYGTILKNLS- 107
           AR +++     +L+  S LI  Y   G     L    +++      N   + ++LK  S 
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 108 ----KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
               + G+    + +  +M    + P E +   V+ +C+ L D   G K+H  ++KLG+D
Sbjct: 161 TRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD 220

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
           S     +AL++ Y K  G  E    +     K     WN++I+  V + K++ + +L   
Sbjct: 221 SDPFSANALLDMYAK-SGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGK 279

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M          TL + L++   +  ++LGR +H   +  D   D  V   L+ MYSK   
Sbjct: 280 MGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL 339

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L+DA+M+FD M  KD +VWN +IS Y   G+  E++ L   M + G   +  T    + S
Sbjct: 340 LQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKS 399

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +  +   + +Q+H   +++G  Y   V NSL+D Y +C  L  A K+F+    + +V++
Sbjct: 400 TAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAY 459

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +SMI  Y  +    EAL+++  M+   ++ D     ++  AC N+ A E  K +H + +K
Sbjct: 460 TSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK 519

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL S      ++   YAKCG I+ A  +F+E  I  + I++W++MI   A+HG   +  
Sbjct: 520 CGLLSDVFAGNSLVNMYAKCGSIDDASCIFNE--ISWRGIVSWSAMIGGLAQHGHGRKAL 577

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           +L+ QM ++ + P+ IT + +L+AC +AGLV E R  F  M++ +G  P+QEHYA MV++
Sbjct: 578 QLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDI 637

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGR G +DEA  LVK+MPF+  A VWG LL A ++H   EL    AE L+++EPE +G +
Sbjct: 638 LGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTH 697

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           +LL+NIYA+ G W+ VAK+R  +++  +KK PG SWIE+   V+ F   D+SHP++  IY
Sbjct: 698 ILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIY 757

Query: 704 TIL 706
             L
Sbjct: 758 VKL 760



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/575 (26%), Positives = 265/575 (46%), Gaps = 54/575 (9%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           YP ++   +   D  SG  IHA++++L       + + LV  Y KC       K +I   
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
             DL S W++LIS  VQNG+ E++   +  M + GA+ +  T  ++L+     ++LELG+
Sbjct: 110 EPDLVS-WSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGK 168

Query: 254 IVHCVAVVSDFC------KDLSVNT----------------------------------A 273
            +H VA+V++         + S++T                                  A
Sbjct: 169 QIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANA 228

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL MY+K    E A  +F ++   D V WN +I+          +L+LL  M        
Sbjct: 229 LLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPS 288

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
           +FT  +A+ + + +  ++ G+Q+H+ +++   +    V   LIDMY +C  L  AR +FD
Sbjct: 289 MFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K V+ W+S+I GY      +EA+ LF+ M  EG+E +  T+  IL +     A   
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +H  S+K G      V  ++  SY KC  +E A ++F  E   ++D++ + SMI+AY
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF--EVCPAEDLVAYTSMITAY 466

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           +++G   +  K+Y +M+  D++PD   F  L  AC N    E+G+ I   + +  G    
Sbjct: 467 SQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC-GLLSD 525

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                S+VN+  + G +D+A  +  ++ ++     W  ++     H         A +L 
Sbjct: 526 VFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGGLAQHGHGR----KALQLF 580

Query: 634 SMEPENA--GNYVLLSNIYAAAGKWNGVAKMRTFL 666
               +N    N++ L ++ +A      V + R F 
Sbjct: 581 YQMLKNGILPNHITLVSVLSACNHAGLVTEARRFF 615


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/662 (30%), Positives = 375/662 (56%), Gaps = 15/662 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           ++H R +I  G   + ++ ++L+  Y  +  L  + + F+++   + + + +I+ N  + 
Sbjct: 121 KVHGR-VIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQN 179

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G+  + L ++ QM  +++ P   T   V  +CS L     G  +H  VV+   +S   + 
Sbjct: 180 GQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLN 239

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
           ++L+  Y K    +  E     R F+++  R    W  +IS   Q+G  +++  +F  M+
Sbjct: 240 NSLIVMYGKLGDLYSAE-----RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQ 294

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKLASL 284
               E +  T++ +L +   L  ++ GR VH   +      +L  +  AL+ +Y+   +L
Sbjct: 295 EFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNL 354

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
            D   +F+ + +K  + WN +IS + ++G P+E+L L + M   G   D ++  +++S+ 
Sbjct: 355 RDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSAC 414

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
            T+   + G Q+H  +++ G ++   V N+LIDMY +C  ++ A K+F+ +K K++V+W+
Sbjct: 415 GTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWN 473

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           SMI G+  +  S+EA+ LF +M +  V++D +T ++++ AC ++G LE  K++H   +  
Sbjct: 474 SMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMY 533

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           GL   S ++TA+   Y+KCG ++MA  +FD  ++  + I++W+ MI+ Y  HG  +    
Sbjct: 534 GLRKDSYLDTALTDMYSKCGELQMAHGVFD--RMSERSIVSWSVMIAGYGMHGQINATIS 591

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+ QM  S ++P+ ITF+ +L+AC +AG VEEG++ F  M E +G EP  +H+A MV+LL
Sbjct: 592 LFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLL 650

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
            RAG ++ A +++  +PF  ++ +WG LL+ C++H   ++ +   + L+ ++  + G Y 
Sbjct: 651 SRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYT 710

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSNIYA  G W+   K+R+ ++ +GL+K PG S IEI K ++ F   D SH Q   IY 
Sbjct: 711 LLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYR 770

Query: 705 IL 706
            L
Sbjct: 771 FL 772



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 190/670 (28%), Positives = 339/670 (50%), Gaps = 51/670 (7%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L   C     L Q+HA ++ + GLH++   S+ LI+SYA +G+   S++VF++   P+S 
Sbjct: 7   LFRRCATSTTLTQLHA-HLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSF 65

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQ 156
           ++G ++K     G +E+ + +Y +M  Q      +  +P V+++CS   D   G K+H +
Sbjct: 66  MWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGR 125

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
           V+K GF+S     DA+VE  + C  G  +      + F  +  R    W+S++   VQNG
Sbjct: 126 VIKCGFES-----DAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNG 180

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           ++ +  ++F  M  E  E DS T++++  +  EL SL LGR VH   V  +   + S+N 
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN 240

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           +L+ MY KL  L  A+ LF+ +  +    W  MIS Y QSG  +E+L +   M       
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKI 391
           +  T +  + + + +  ++ G+ +H  V+R   D ++  +  +L+++Y +  +L    K+
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKV 360

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+++K KT++SW+++I  +  + Q  EAL LF +M+ +G+  D  ++ + L AC  I   
Sbjct: 361 FETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 420

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           +    +HGY +K G N    V  A+   YAKCG +  A ++F  EKI  K ++TWNSMI 
Sbjct: 421 QLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMF--EKIKEKSLVTWNSMIC 477

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR------IIFKEMK 565
            ++++G   +   L+ QM  + V+ D +TFL ++ AC + G +E+G+      I++   K
Sbjct: 478 GFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRK 537

Query: 566 ESY------------------------GYEPSQEHYASMVNLLGRAGHMDEARELVKDM- 600
           +SY                          E S   ++ M+   G  G ++    L   M 
Sbjct: 538 DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 597

Query: 601 --PFKPDARVWGPLLSACKMHSETELAELTAEKL--ISMEPENAGNYVLLSNIYAAAGKW 656
               KP+   +  +LSAC      E  +L    +    +EP++  ++  + ++ + AG  
Sbjct: 598 GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKH-DHFACMVDLLSRAGDL 656

Query: 657 NGVAKMRTFL 666
           NG  ++ T L
Sbjct: 657 NGAYQIITSL 666


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 211/689 (30%), Positives = 375/689 (54%), Gaps = 32/689 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA  +       ++ +++ L++ Y   G +    +VF+ IT  + + + + +  L +
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL---LDFISGEKIHAQVVKLGFDSF 165
           F ++E+ L  ++ M +++M  +  T   V  +CS L        G+++H   +++G D  
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQK 230

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
               +AL+  Y K  G  ++ K + +         WN++IS   Q+ +  ++   F+LM 
Sbjct: 231 TFTNNALMAMYAKL-GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV 289

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAVVSDFCKDLSVNTALLSMYSKLASL 284
           +EG E D  T+ ++L +   L+ L++G+ +H  V   +D  ++  V +AL+ MY     +
Sbjct: 290 LEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 349

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRADLFTAIAAVSS 343
           E  + +FD +  +   +WN MIS Y ++G  +++L L + M++ +G   +  T  + + +
Sbjct: 350 ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPA 409

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
               +     + +H   ++ G      V N+L+DMY     ++ +  IFDS++ +  VSW
Sbjct: 410 CVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSW 469

Query: 404 SSMIKGYVTHDQSLEALRLFSEM-KLEGV----------------EVDFVTIINILPACV 446
           ++MI GYV   +   AL L  EM ++E                  + + +T++ +LP C 
Sbjct: 470 NTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCA 529

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            + A+   K +H Y+++  L S  +V +A+   YAKCGC+ ++  +F+E  + +K++ITW
Sbjct: 530 ALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE--MPNKNVITW 587

Query: 507 NSMISAYAKHGDWSQCFKLYTQM-----KQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           N +I A   HG   +  +L+  M     +  + +P+ +TF+ +  AC ++GL+ EG  +F
Sbjct: 588 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 647

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHS 620
             MK  +G EP+ +HYA +V+LLGRAG ++EA ELV  MP + D    W  LL AC++H 
Sbjct: 648 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 707

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             EL E+ A+ L+ +EP  A +YVLLSNIY++AG WN   ++R  +R  G+KK PGCSWI
Sbjct: 708 NVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWI 767

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGIL 709
           E    VH+F A D SHPQ++ ++  L  L
Sbjct: 768 EFRDEVHKFMAGDVSHPQSEQLHGFLETL 796



 Score =  251 bits (642), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 159/548 (29%), Positives = 287/548 (52%), Gaps = 33/548 (6%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           L++ ++  ++ + +  Y +M +    P    +P V+++ S L D  +GE+IHA  VK G+
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 163 DSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
            S    V + LV  Y KC GG  +   +  R     +  WNS I+   +  K E++ E F
Sbjct: 124 GSSSVTVANTLVNMYGKC-GGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAF 182

Query: 222 KLMRMEGAEFDSGTLINLLRSTVEL---KSLELGRIVHCVAV-VSDFCKDLSVNTALLSM 277
           + M+ME  E  S TL+++  +   L     L LG+ +H  ++ V D  +    N AL++M
Sbjct: 183 RAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGD--QKTFTNNALMAM 240

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y+KL  ++D+K LF+   D+D V WN MIS++ QS    E+L     MV  G   D  T 
Sbjct: 241 YAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTI 300

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVK 396
            + + + S ++ ++ GK++HA VLRN    + S V ++L+DMYC C  +   R++FD + 
Sbjct: 301 ASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHIL 360

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVK 455
            + +  W++MI GY  +    +AL LF EM K+ G+  +  T+ +++PACV+  A  + +
Sbjct: 361 GRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKE 420

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +HGY++KLG      V  A+   Y++ G ++++  +FD  ++  +D ++WN+MI+ Y  
Sbjct: 421 SIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEV--RDRVSWNTMITGYVL 478

Query: 516 HGDWSQCFKLYTQMKQSD-----------------VRPDLITFLGLLTACVNAGLVEEGR 558
            G +S    L  +M++ +                  +P+ IT + +L  C     + +G+
Sbjct: 479 SGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGK 538

Query: 559 IIFK-EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
            I    ++     + +    +++V++  + G ++ +R +  +MP K +   W  L+ AC 
Sbjct: 539 EIHAYAIRNMLASDITVG--SALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACG 595

Query: 618 MHSETELA 625
           MH + E A
Sbjct: 596 MHGKGEEA 603



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
           +++  SW   ++     +   EA+  + EM + G   D      +L A   +  L+  + 
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 457 LHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           +H  ++K G  S S +V   +   Y KCG I    ++FD  +I  +D ++WNS I+A  +
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFD--RITDRDQVSWNSFIAALCR 171

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE---P 572
              W Q  + +  M+  ++     T + +  AC N G++   R+     K+ +GY     
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRL----GKQLHGYSLRVG 227

Query: 573 SQEHYA--SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            Q+ +   +++ +  + G +D+++ L +      D   W  ++S+
Sbjct: 228 DQKTFTNNALMAMYAKLGRVDDSKALFESF-VDRDMVSWNTMISS 271


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 214/664 (32%), Positives = 362/664 (54%), Gaps = 18/664 (2%)

Query: 60  GLHQNLILSSNLIDSYANL--GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLL 117
           G+  ++ +++N++  Y+    G L+L+ ++F+ +   +++ + T++    + G       
Sbjct: 29  GIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWE 88

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
             K M  +       T+  +++  +       G+++H+ +VK+G++     G AL++ Y 
Sbjct: 89  FLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYA 148

Query: 178 KCD---GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
           KC+     ++  +GM  R F      WN+LI   VQ G  + +F L   M+ EG   + G
Sbjct: 149 KCERVEDAYDVFQGMPVRNF----VSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDG 204

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD-K 293
           T   LL      K  +L   +HC  +        ++  A L+ YS+   LEDAK +FD  
Sbjct: 205 TFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGA 264

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           +  +D V WN M+ AY      +++  L + M   GF  D++T    +S+     +  +G
Sbjct: 265 VGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYG 324

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECED--LNCARKIFDSVKTKTVVSWSSMIKGYV 411
           K  HA V++ G +  V++ N+LI MY +  +  +  A  +F S+K+K  VSW+S++ G+ 
Sbjct: 325 KSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFS 384

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
               S +AL+LF  M+    E+D      +L +C ++  L+  + +H  ++K G +S   
Sbjct: 385 QMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDF 444

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V +++   Y+KCG IE A + F++   +S   ITWNS++ AYA+HG       L++ M++
Sbjct: 445 VASSLIFMYSKCGIIEDAWKCFEDTTKESS--ITWNSIMFAYAQHGQGDVALDLFSIMRE 502

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            +V+ D +TF+ +LTAC + GLVE+GR + K M+  YG  P  EHYA  V+L GRAG+++
Sbjct: 503 REVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLE 562

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EA+ L+  MPF+P+A V   LL AC+     ELA   A +L+ +EPE    YV+LSN+Y 
Sbjct: 563 EAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYG 622

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
              +W+  A +   +R+R +KK PG SWIE+   VH F A D+SHP ++ +Y ILG    
Sbjct: 623 HLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILG---- 678

Query: 712 EIME 715
           E+ME
Sbjct: 679 ELME 682



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 205/416 (49%), Gaps = 21/416 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+H+  I+  G  Q++   S L+D YA    +  +  VF  +   N + +  ++    +
Sbjct: 122 QQVHS-LIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQ 180

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK-------IHAQVVKLG 161
            G+ +    +   M  + +   + T+       + LL  + G+K       +H +++K G
Sbjct: 181 VGDRDTAFWLLDCMQKEGVRVEDGTF-------APLLTLLDGDKFYKLTMQLHCKIIKHG 233

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFE 219
            + ++ + +A +  Y +C G  E+ K +       +DL + WNS++   + + K E +F 
Sbjct: 234 LEFYNALCNATLTAYSEC-GLLEDAKRVFDGAVGTRDLVT-WNSMLVAYLVHDKDEDAFN 291

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  M+  G E D  T   ++ +         G+  H + +     + +++  AL++MY 
Sbjct: 292 LFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYL 351

Query: 280 KL--ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           KL   S+E A  LF  M  KDRV WN +++ + Q GF +++L+L   M  S    D +  
Sbjct: 352 KLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAY 411

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            A + S S +  ++ G+Q+H   ++ G D    V +SLI MY +C  +  A K F+    
Sbjct: 412 SAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTK 471

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           ++ ++W+S++  Y  H Q   AL LFS M+   V++D VT + +L AC ++G +E 
Sbjct: 472 ESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQ 527



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 13/312 (4%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSK 108
           Q+H + II HGL     L +  + +Y+  GLL  +++VF+       L+ + ++L     
Sbjct: 224 QLHCK-IIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLV 282

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             + E    ++ +M      P   TY  VI +C        G+  HA V+K G +    +
Sbjct: 283 HDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTI 342

Query: 169 GDALVEFYIKCDGGFENEKGM--IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            +AL+  Y+K      N K M      F  +KS+    WNS+++   Q G SE + +LF 
Sbjct: 343 CNALITMYLKL-----NNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFG 397

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR    E D      +LRS  +L  L+LG+ +H + V + F  +  V ++L+ MYSK  
Sbjct: 398 HMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCG 457

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +EDA   F+  + +  + WN ++ AY Q G    +L+L   M     + D  T +A ++
Sbjct: 458 IIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLT 517

Query: 343 SISTMKNIEWGK 354
           + S +  +E G+
Sbjct: 518 ACSHVGLVEQGR 529


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/664 (31%), Positives = 358/664 (53%), Gaps = 7/664 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            QQ+HA   ++HGL  N+ + S+LI+ YA  G  S ++ VF+     N +++  +L    +
Sbjct: 345  QQMHAA-AVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQ 403

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                E+ + +++ M   ++   E T+  ++ +C+ L  F  G+++H   +K   D    V
Sbjct: 404  NELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFV 463

Query: 169  GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             +A ++ Y K  G   + K +     +KD  S WN+L     QN + E++  + K MR+ 
Sbjct: 464  ANATLDMYSKY-GAIGDAKALFSLIPYKDSIS-WNALTVGLAQNLEEEEAVCMLKRMRLH 521

Query: 228  GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
            G   D  +    + +   +++ E G+ +HC+A+    C + +V ++L+ +YSK   +E +
Sbjct: 522  GITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS 581

Query: 288  KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            + +F ++     V  N +I+ + Q+    E+++L   +++ G +    T  + +S  S  
Sbjct: 582  RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGS 641

Query: 348  KNIEWGKQMHANVLRNGSDYQVSVHN-SLIDMYCECEDLNCARKIFDSVKT-KTVVSWSS 405
             N   GKQ+H   L++G  Y  ++   SL  +Y + + L  A K+   +   K +  W++
Sbjct: 642  LNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTA 701

Query: 406  MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            +I GY  +     +L  F  M+   V  D  T  ++L AC ++ A    K +HG   K G
Sbjct: 702  IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 761

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
              S  +  +A+   Y+KCG +  + E F E K + +DI+ WNSMI  +AK+G   +   L
Sbjct: 762  FGSYETATSALIDMYSKCGDVISSFEAFKELK-NKQDIMPWNSMIVGFAKNGYADEALLL 820

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            + +M++  ++PD +TFLG+L AC ++GL+ EGR  F  M++ YG  P  +HYA  ++LLG
Sbjct: 821  FQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLG 880

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            R GH+ EA+E +  +PF+PD  VW   L+AC+MH + E  ++ A KL+ +EP+ +  YVL
Sbjct: 881  RGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVL 940

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            LS+++AA G W      R  +R++G+ K PGCSWI +G     F   D+ HP    IY +
Sbjct: 941  LSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEM 1000

Query: 706  LGIL 709
            LG L
Sbjct: 1001 LGDL 1004



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/578 (26%), Positives = 293/578 (50%), Gaps = 18/578 (3%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I + A+ G L  +  +   + +P+++ +  ++   ++ G     L +YK M    ++P
Sbjct: 264 TIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWP 323

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T+  ++ + + +  F+ G+++HA  V  G D+   VG +L+  Y KC G   + K +
Sbjct: 324 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKC-GCPSDAKNV 382

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
                +     WN++++  VQN   E++  +F+ M     + D  T +++L +   L S 
Sbjct: 383 FDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 442

Query: 250 ELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            LG+ VHCV + +  C D+S  V  A L MYSK  ++ DAK LF  +  KD + WN +  
Sbjct: 443 YLGKQVHCVTIKN--CMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTV 500

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q+   +E++ +L  M   G   D  +   A+++ S ++  E GKQ+H   ++ G   
Sbjct: 501 GLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICS 560

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
             +V +SLID+Y +  D+  +RKIF  V   ++V  +++I G+V ++   EA++LF ++ 
Sbjct: 561 NHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVL 620

Query: 428 LEGVEVDFVTIINILPACVNIGALEHV--KYLHGYSMKLGL---NSLSSVNTAIFISYAK 482
            +G++   VT  +IL  C   G+L     K +H Y++K G+   ++L  V+ A    Y K
Sbjct: 621 KDGLKPSSVTFSSILSGCS--GSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGI--YLK 676

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              +E A +L  E   D K++  W ++IS YA++G        + +M+  +VR D  TF 
Sbjct: 677 SKMLEDANKLLTEMP-DHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFA 735

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L AC +     +G+ I   + +S G+   +   ++++++  + G +  + E  K++  
Sbjct: 736 SVLKACSDVTAFADGKEIHGLITKS-GFGSYETATSALIDMYSKCGDVISSFEAFKELKN 794

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKL--ISMEPE 638
           K D   W  ++     +   + A L  +K+  + ++P+
Sbjct: 795 KQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPD 832



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 211/472 (44%), Gaps = 47/472 (9%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P +     V+ +CS +     G ++H  VVK GF S      ALV+ Y KC G   N + 
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKC-GDVPNAR- 213

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
              R F  +       W+S+I+   + G  +++  LF  M   G+  D  TL+ ++ +  
Sbjct: 214 ---RVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLA 270

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
                  GR+ H  A                              L  KM     V WN 
Sbjct: 271 SS-----GRLDHATA------------------------------LLKKMPTPSTVAWNA 295

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +IS + QSG     L L   M   G      T  + +S+ + MK    G+QMHA  + +G
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            D  V V +SLI++Y +C   + A+ +FD    K +V W++M+ G+V ++   EA+R+F 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 415

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M    ++ D  T ++IL AC  + +    K +H  ++K  ++    V  A    Y+K G
Sbjct: 416 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYG 475

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            I  A  LF    I  KD I+WN++    A++ +  +   +  +M+   + PD ++F   
Sbjct: 476 AIGDAKALF--SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTA 533

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           + AC N    E G+ I   +   YG   +    +S+++L  + G ++ +R++
Sbjct: 534 INACSNIRATETGKQIHC-LAIKYGICSNHAVGSSLIDLYSKHGDVESSRKI 584



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 186/426 (43%), Gaps = 46/426 (10%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
            + +P + + P    S +C         +H ++++ G      +GD+LVE Y K  G   
Sbjct: 57  HARHPFDASPPRARHSQTC-------RALHGRILRGGSPLLGRLGDSLVELYCK-SGRVG 108

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR-MEGAEFDSGTLINLLRST 243
                +    +      +SL+S   ++G        F+ +R   G   D   L  +L + 
Sbjct: 109 YAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSAC 168

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             +  L  GR VHC  V S F   +    AL+ MY+K   + +A+ +FD ++  D + W+
Sbjct: 169 SRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWS 228

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+ Y++ G  +E+L L   M + G   D  T +  +S++++      G+  HA  L  
Sbjct: 229 SMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASS-----GRLDHATAL-- 281

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                                          + T + V+W+++I G+         L L+
Sbjct: 282 ----------------------------LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLY 313

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+  G+     T  ++L A  N+ A    + +H  ++  GL++   V +++   YAKC
Sbjct: 314 KDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKC 373

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           GC   A  +FD      K+I+ WN+M++ + ++    +  +++  M +  ++ D  TF+ 
Sbjct: 374 GCPSDAKNVFDLSC--EKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVS 431

Query: 544 LLTACV 549
           +L AC 
Sbjct: 432 ILGACT 437



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 44/314 (14%)

Query: 305 MISAYYQSGFPKESL---ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           ++S + +SG P + L     + C   +G R D F     +S+ S +  + +G+Q+H +V+
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCT--AGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVV 185

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++G    V    +L+DMY +C D+  AR++FD +     + WSSMI  Y       EAL 
Sbjct: 186 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 245

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LFS M   G   D VT++ I+    + G L+H                    TA+     
Sbjct: 246 LFSRMDKMGSAPDQVTLVTIISTLASSGRLDHA-------------------TALL---- 282

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
                         +K+ +   + WN++IS +A+ G       LY  M+   + P   TF
Sbjct: 283 --------------KKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 328

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             +L+A  N     EG+ +       +G + +    +S++NL  + G   +A+  V D+ 
Sbjct: 329 ASMLSAAANMKAFVEGQQM-HAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN-VFDLS 386

Query: 602 FKPDARVWGPLLSA 615
            + +  +W  +L+ 
Sbjct: 387 CEKNIVMWNAMLTG 400



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 14/258 (5%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +H  +LR GS     + +SL+++YC+   +  A         +   + SS++  +   
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 414 DQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
               + L  F  ++   G   D   +  +L AC  +G L + + +H   +K G +S    
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             A+   YAKCG +  A  +FD   I   D I W+SMI+ Y + G + +   L+++M + 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFD--GIACPDTICWSSMIACYHRVGCYQEALALFSRMDKM 253

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD +T + +++   ++G ++    + K+M       PS   + ++++   ++G    
Sbjct: 254 GSAPDQVTLVTIISTLASSGRLDHATALLKKMP-----TPSTVAWNAVISGHAQSGLEFN 308

Query: 593 ARELVKDMPFKPDARVWG 610
              L KDM      R WG
Sbjct: 309 VLGLYKDM------RSWG 320


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/664 (31%), Positives = 358/664 (53%), Gaps = 7/664 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            QQ+HA   ++HGL  N+ + S+LI+ YA  G  S ++ VF+     N +++  +L    +
Sbjct: 355  QQMHAA-AVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQ 413

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                E+ + +++ M   ++   E T+  ++ +C+ L  F  G+++H   +K   D    V
Sbjct: 414  NELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFV 473

Query: 169  GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             +A ++ Y K  G   + K +     +KD  S WN+L     QN + E++  + K MR+ 
Sbjct: 474  ANATLDMYSKY-GAIGDAKALFSLIPYKDSIS-WNALTVGLAQNLEEEEAVCMLKRMRLH 531

Query: 228  GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
            G   D  +    + +   +++ E G+ +HC+A+    C + +V ++L+ +YSK   +E +
Sbjct: 532  GITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS 591

Query: 288  KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            + +F ++     V  N +I+ + Q+    E+++L   +++ G +    T  + +S  S  
Sbjct: 592  RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGS 651

Query: 348  KNIEWGKQMHANVLRNGSDYQVSVHN-SLIDMYCECEDLNCARKIFDSVKT-KTVVSWSS 405
             N   GKQ+H   L++G  Y  ++   SL  +Y + + L  A K+   +   K +  W++
Sbjct: 652  LNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTA 711

Query: 406  MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            +I GY  +     +L  F  M+   V  D  T  ++L AC ++ A    K +HG   K G
Sbjct: 712  IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 771

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
              S  +  +A+   Y+KCG +  + E F E K + +DI+ WNSMI  +AK+G   +   L
Sbjct: 772  FGSYETATSALIDMYSKCGDVISSFEAFKELK-NKQDIMPWNSMIVGFAKNGYADEALLL 830

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            + +M++  ++PD +TFLG+L AC ++GL+ EGR  F  M++ YG  P  +HYA  ++LLG
Sbjct: 831  FQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLG 890

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            R GH+ EA+E +  +PF+PD  VW   L+AC+MH + E  ++ A KL+ +EP+ +  YVL
Sbjct: 891  RGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVL 950

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            LS+++AA G W      R  +R++G+ K PGCSWI +G     F   D+ HP    IY +
Sbjct: 951  LSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEM 1010

Query: 706  LGIL 709
            LG L
Sbjct: 1011 LGDL 1014



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/551 (26%), Positives = 281/551 (50%), Gaps = 16/551 (2%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I + A+ G L  +  +   + +P+++ +  ++   ++ G     L +YK M    ++P
Sbjct: 274 TIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWP 333

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T+  ++ + + +  F+ G+++HA  V  G D+   VG +L+  Y KC G   + K +
Sbjct: 334 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKC-GCPSDAKNV 392

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
                +     WN++++  VQN   E++  +F+ M     + D  T +++L +   L S 
Sbjct: 393 FDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 452

Query: 250 ELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            LG+ VHCV + +  C D+S  V  A L MYSK  ++ DAK LF  +  KD + WN +  
Sbjct: 453 YLGKQVHCVTIKN--CMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTV 510

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q+   +E++ +L  M   G   D  +   A+++ S ++  E GKQ+H   ++ G   
Sbjct: 511 GLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICS 570

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
             +V +SLID+Y +  D+  +RKIF  V   ++V  +++I G+V ++   EA++LF ++ 
Sbjct: 571 NHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVL 630

Query: 428 LEGVEVDFVTIINILPACVNIGALEHV--KYLHGYSMKLGL---NSLSSVNTAIFISYAK 482
            +G++   VT  +IL  C   G+L     K +H Y++K G+   ++L  V+ A    Y K
Sbjct: 631 KDGLKPSSVTFSSILSGCS--GSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGI--YLK 686

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              +E A +L  E   D K++  W ++IS YA++G        + +M+  +VR D  TF 
Sbjct: 687 SKMLEDANKLLTEMP-DHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFA 745

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L AC +     +G+ I   + +S G+   +   ++++++  + G +  + E  K++  
Sbjct: 746 SVLKACSDVTAFADGKEIHGLITKS-GFGSYETATSALIDMYSKCGDVISSFEAFKELKN 804

Query: 603 KPDARVWGPLL 613
           K D   W  ++
Sbjct: 805 KQDIMPWNSMI 815



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/568 (21%), Positives = 275/568 (48%), Gaps = 41/568 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   ++  G   ++   + L+D YA  G +  +++VF+ I  P+++ + +++    +
Sbjct: 188 RQVHCD-VVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHR 246

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G Y++ L ++ +M      P + T   +I +                            
Sbjct: 247 VGCYQEALALFSRMDKMGSAPDQVTLVTIIST---------------------------- 278

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
                   +   G  ++   ++++        WN++IS   Q+G       L+K MR  G
Sbjct: 279 --------LASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWG 330

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T  ++L +   +K+   G+ +H  AV+     ++ V ++L+++Y+K     DAK
Sbjct: 331 LWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAK 390

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD   +K+ V+WN M++ + Q+  P+E++ +   M+R   + D FT ++ + + + + 
Sbjct: 391 NVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLS 450

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           +   GKQ+H   ++N  D  + V N+ +DMY +   +  A+ +F  +  K  +SW+++  
Sbjct: 451 SFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTV 510

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G   + +  EA+ +   M+L G+  D V+    + AC NI A E  K +H  ++K G+ S
Sbjct: 511 GLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICS 570

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             +V +++   Y+K G +E + ++F   ++D+  I+  N++I+ + ++ +  +  +L+ Q
Sbjct: 571 NHAVGSSLIDLYSKHGDVESSRKIF--AQVDASSIVPINALIAGFVQNNNEDEAIQLFQQ 628

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF-KEMKESYGYEPSQEHYASMVNLLGRA 587
           + +  ++P  +TF  +L+ C  +     G+ +    +K    Y+ +     S+  +  ++
Sbjct: 629 VLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLG-VSLAGIYLKS 687

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSA 615
             +++A +L+ +MP   +   W  ++S 
Sbjct: 688 KMLEDANKLLTEMPDHKNLFEWTAIISG 715



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 186/426 (43%), Gaps = 46/426 (10%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
            + +P + + P    S +C         +H ++++ G      +GD+LVE Y K  G   
Sbjct: 67  HARHPFDASPPRARHSQTC-------RALHGRILRGGSPLLGRLGDSLVELYCK-SGRVG 118

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR-MEGAEFDSGTLINLLRST 243
                +    +      +SL+S   ++G        F+ +R   G   D   L  +L + 
Sbjct: 119 YAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSAC 178

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             +  L  GR VHC  V S F   +    AL+ MY+K   + +A+ +FD ++  D + W+
Sbjct: 179 SRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWS 238

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+ Y++ G  +E+L L   M + G   D  T +  +S++++      G+  HA  L  
Sbjct: 239 SMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASS-----GRLDHATAL-- 291

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                                          + T + V+W+++I G+         L L+
Sbjct: 292 ----------------------------LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLY 323

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+  G+     T  ++L A  N+ A    + +H  ++  GL++   V +++   YAKC
Sbjct: 324 KDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKC 383

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           GC   A  +FD      K+I+ WN+M++ + ++    +  +++  M +  ++ D  TF+ 
Sbjct: 384 GCPSDAKNVFDLSC--EKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVS 441

Query: 544 LLTACV 549
           +L AC 
Sbjct: 442 ILGACT 447



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 44/314 (14%)

Query: 305 MISAYYQSGFPKESL---ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           ++S + +SG P + L     + C   +G R D F     +S+ S +  + +G+Q+H +V+
Sbjct: 138 LLSCHARSGSPGDVLGAFRYIRCT--AGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVV 195

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++G    V    +L+DMY +C D+  AR++FD +     + WSSMI  Y       EAL 
Sbjct: 196 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 255

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LFS M   G   D VT++ I+    + G L+H                    TA+     
Sbjct: 256 LFSRMDKMGSAPDQVTLVTIISTLASSGRLDHA-------------------TALL---- 292

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
                         +K+ +   + WN++IS +A+ G       LY  M+   + P   TF
Sbjct: 293 --------------KKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 338

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             +L+A  N     EG+ +       +G + +    +S++NL  + G   +A+  V D+ 
Sbjct: 339 ASMLSAAANMKAFVEGQQM-HAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN-VFDLS 396

Query: 602 FKPDARVWGPLLSA 615
            + +  +W  +L+ 
Sbjct: 397 CEKNIVMWNAMLTG 410



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 14/258 (5%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +H  +LR GS     + +SL+++YC+   +  A         +   + SS++  +   
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 414 DQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
               + L  F  ++   G   D   +  +L AC  +G L + + +H   +K G +S    
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             A+   YAKCG +  A  +FD   I   D I W+SMI+ Y + G + +   L+++M + 
Sbjct: 206 EAALVDMYAKCGDVPNARRVFD--GIACPDTICWSSMIACYHRVGCYQEALALFSRMDKM 263

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD +T + +++   ++G ++    + K+M       PS   + ++++   ++G    
Sbjct: 264 GSAPDQVTLVTIISTLASSGRLDHATALLKKMP-----TPSTVAWNAVISGHAQSGLEFN 318

Query: 593 ARELVKDMPFKPDARVWG 610
              L KDM      R WG
Sbjct: 319 VLGLYKDM------RSWG 330


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/664 (31%), Positives = 358/664 (53%), Gaps = 7/664 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            QQ+HA   ++HGL  N+ + S+LI+ YA  G  S ++ VF+     N +++  +L    +
Sbjct: 345  QQMHAA-AVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQ 403

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                E+ + +++ M   ++   E T+  ++ +C+ L  F  G+++H   +K   D    V
Sbjct: 404  NELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFV 463

Query: 169  GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             +A ++ Y K  G   + K +     +KD  S WN+L     QN + E++  + K MR+ 
Sbjct: 464  ANATLDMYSKY-GAIGDAKALFSLIPYKDSIS-WNALTVGLAQNLEEEEAVCMLKRMRLH 521

Query: 228  GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
            G   D  +    + +   +++ E G+ +HC+A+    C + +V ++L+ +YSK   +E +
Sbjct: 522  GITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESS 581

Query: 288  KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            + +F ++     V  N +I+ + Q+    E+++L   +++ G +    T  + +S  S  
Sbjct: 582  RKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGS 641

Query: 348  KNIEWGKQMHANVLRNGSDYQVSVHN-SLIDMYCECEDLNCARKIFDSVKT-KTVVSWSS 405
             N   GKQ+H   L++G  Y  ++   SL  +Y + + L  A K+   +   K +  W++
Sbjct: 642  LNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTA 701

Query: 406  MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            +I GY  +     +L  F  M+   V  D  T  ++L AC ++ A    K +HG   K G
Sbjct: 702  IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 761

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
              S  +  +A+   Y+KCG +  + E F E K + +DI+ WNSMI  +AK+G   +   L
Sbjct: 762  FGSYETATSALIDMYSKCGDVISSFEAFKELK-NKQDIMPWNSMIVGFAKNGYADEALLL 820

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            + +M++  ++PD +TFLG+L AC ++GL+ EGR  F  M++ YG  P  +HYA  ++LLG
Sbjct: 821  FQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLLG 880

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            R GH+ EA+E +  +PF+PD  VW   L+AC+MH + E  ++ A KL+ +EP+ +  YVL
Sbjct: 881  RGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVL 940

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            LS+++AA G W      R  +R++G+ K PGCSWI +G     F   D+ HP    IY +
Sbjct: 941  LSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEM 1000

Query: 706  LGIL 709
            LG L
Sbjct: 1001 LGDL 1004



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/578 (26%), Positives = 293/578 (50%), Gaps = 18/578 (3%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I + A+ G L  +  +   + +P+++ +  ++   ++ G     L +YK M    ++P
Sbjct: 264 TIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWP 323

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T+  ++ + + +  F+ G+++HA  V  G D+   VG +L+  Y KC G   + K +
Sbjct: 324 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKC-GCPSDAKNV 382

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
                +     WN++++  VQN   E++  +F+ M     + D  T +++L +   L S 
Sbjct: 383 FDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSF 442

Query: 250 ELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            LG+ VHCV + +  C D+S  V  A L MYSK  ++ DAK LF  +  KD + WN +  
Sbjct: 443 YLGKQVHCVTIKN--CMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTV 500

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q+   +E++ +L  M   G   D  +   A+++ S ++  E GKQ+H   ++ G   
Sbjct: 501 GLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICS 560

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
             +V +SLID+Y +  D+  +RKIF  V   ++V  +++I G+V ++   EA++LF ++ 
Sbjct: 561 NHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVL 620

Query: 428 LEGVEVDFVTIINILPACVNIGALEHV--KYLHGYSMKLGL---NSLSSVNTAIFISYAK 482
            +G++   VT  +IL  C   G+L     K +H Y++K G+   ++L  V+ A    Y K
Sbjct: 621 KDGLKPSSVTFSSILSGCS--GSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGI--YLK 676

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              +E A +L  E   D K++  W ++IS YA++G        + +M+  +VR D  TF 
Sbjct: 677 SKMLEDANKLLTEMP-DHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFA 735

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L AC +     +G+ I   + +S G+   +   ++++++  + G +  + E  K++  
Sbjct: 736 SVLKACSDVTAFADGKEIHGLITKS-GFGSYETATSALIDMYSKCGDVISSFEAFKELKN 794

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKL--ISMEPE 638
           K D   W  ++     +   + A L  +K+  + ++P+
Sbjct: 795 KQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPD 832



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 211/472 (44%), Gaps = 47/472 (9%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P +     V+ +CS +     G ++H  VVK GF S      ALV+ Y KC G   N + 
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKC-GDVPNAR- 213

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
              R F  +       W+S+I+   + G  +++  LF  M   G+  D  TL+ ++ +  
Sbjct: 214 ---RVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLA 270

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
                  GR+ H  A                              L  KM     V WN 
Sbjct: 271 SS-----GRLDHATA------------------------------LLKKMPTPSTVAWNA 295

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +IS + QSG     L L   M   G      T  + +S+ + MK    G+QMHA  + +G
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            D  V V +SLI++Y +C   + A+ +FD    K +V W++M+ G+V ++   EA+R+F 
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 415

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M    ++ D  T ++IL AC  + +    K +H  ++K  ++    V  A    Y+K G
Sbjct: 416 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYG 475

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            I  A  LF    I  KD I+WN++    A++ +  +   +  +M+   + PD ++F   
Sbjct: 476 AIGDAKALF--SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTA 533

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           + AC N    E G+ I   +   YG   +    +S+++L  + G ++ +R++
Sbjct: 534 INACSNIRATETGKQIHC-LAIKYGICSNHAVGSSLIDLYSKHGDVESSRKI 584



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 186/426 (43%), Gaps = 46/426 (10%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
            + +P + + P    S +C         +H ++++ G      +GD+LVE Y K  G   
Sbjct: 57  HARHPFDASPPRARHSQTC-------RALHGRILRGGSPLLGRLGDSLVELYCK-SGRVG 108

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR-MEGAEFDSGTLINLLRST 243
                +    +      +SL+S   ++G        F+ +R   G   D   L  +L + 
Sbjct: 109 YAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSAC 168

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             +  L  GR VHC  V S F   +    AL+ MY+K   + +A+ +FD ++  D + W+
Sbjct: 169 SRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWS 228

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+ Y++ G  +E+L L   M + G   D  T +  +S++++      G+  HA  L  
Sbjct: 229 SMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASS-----GRLDHATAL-- 281

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                                          + T + V+W+++I G+         L L+
Sbjct: 282 ----------------------------LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLY 313

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+  G+     T  ++L A  N+ A    + +H  ++  GL++   V +++   YAKC
Sbjct: 314 KDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKC 373

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           GC   A  +FD      K+I+ WN+M++ + ++    +  +++  M +  ++ D  TF+ 
Sbjct: 374 GCPSDAKNVFDLSC--EKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVS 431

Query: 544 LLTACV 549
           +L AC 
Sbjct: 432 ILGACT 437



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 140/314 (44%), Gaps = 44/314 (14%)

Query: 305 MISAYYQSGFPKESL---ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           ++S + +SG P + L     + C   +G R D F     +S+ S +  + +G+Q+H +V+
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCT--AGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVV 185

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++G    V    +L+DMY +C D+  AR++FD +     + WSSMI  Y       EAL 
Sbjct: 186 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 245

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LFS M   G   D VT++ I+    + G L+H                    TA+     
Sbjct: 246 LFSRMDKMGSAPDQVTLVTIISTLASSGRLDHA-------------------TALL---- 282

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
                         +K+ +   + WN++IS +A+ G       LY  M+   + P   TF
Sbjct: 283 --------------KKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 328

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             +L+A  N     EG+ +       +G + +    +S++NL  + G   +A+  V D+ 
Sbjct: 329 ASMLSAAANMKAFVEGQQM-HAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN-VFDLS 386

Query: 602 FKPDARVWGPLLSA 615
            + +  +W  +L+ 
Sbjct: 387 CEKNIVMWNAMLTG 400



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 14/258 (5%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +H  +LR GS     + +SL+++YC+   +  A         +   + SS++  +   
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 414 DQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
               + L  F  ++   G   D   +  +L AC  +G L + + +H   +K G +S    
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             A+   YAKCG +  A  +FD   I   D I W+SMI+ Y + G + +   L+++M + 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFD--GIACPDTICWSSMIACYHRVGCYQEALALFSRMDKM 253

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD +T + +++   ++G ++    + K+M       PS   + ++++   ++G    
Sbjct: 254 GSAPDQVTLVTIISTLASSGRLDHATALLKKMP-----TPSTVAWNAVISGHAQSGLEFN 308

Query: 593 ARELVKDMPFKPDARVWG 610
              L KDM      R WG
Sbjct: 309 VLGLYKDM------RSWG 320


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 384/681 (56%), Gaps = 27/681 (3%)

Query: 49  QQIHAR-YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +QIHA  Y   +G+  ++ +++ L++ Y   G      +VF+ I+  N + + +++ +L 
Sbjct: 117 KQIHAHVYKFGYGV-DSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 175

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL---DFISGEKIHAQVVKLG-FD 163
            F ++E  L  ++ M  +++ P+  T   V+ +CS L      + G+++HA  ++ G  +
Sbjct: 176 SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 235

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           SF  + + LV  Y K  G   + K ++     +DL + WN+++S   QN +  ++ E  +
Sbjct: 236 SF--IINTLVAMYGKL-GKLASSKVLLGSFGGRDLVT-WNTVLSSLCQNEQLLEALEYLR 291

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKL 281
            M +EG E D  T+ ++L +   L+ L  G+ +H  A+ +    + S V +AL+ MY   
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAIAA 340
             +   + +FD M D+   +WN MI+ Y Q+   KE+L L + M  S G  A+  T    
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V +          + +H  V++ G D    V N+L+DMY     ++ A +IF  ++ + +
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMK-LE----------GVEVDFVTIINILPACVNIG 449
           V+W++MI GYV  +   +AL L  +M+ LE           ++ + +T++ ILP+C  + 
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL   K +H Y++K  L +  +V +A+   YAKCGC++M+ ++FD+  I  K++ITWN +
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ--IPQKNVITWNVI 589

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I AY  HG+  +   L   M    V+P+ +TF+ +  AC ++G+V+EG  IF  MK  YG
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELT 628
            EPS +HYA +V+LLGRAG + EA +L+  MP   + A  W  LL A ++H+  E+ E+ 
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A+ LI +EP  A +YVLL+NIY++AG W+   ++R  ++++G++K PGCSWIE G  VH+
Sbjct: 710 AQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHK 769

Query: 689 FWAADQSHPQADAIYTILGIL 709
           F A D SHPQ++ +   L  L
Sbjct: 770 FVAGDSSHPQSEKLSGYLETL 790



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 269/536 (50%), Gaps = 35/536 (6%)

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGD 170
            + +L Y  M +  + P    +P ++++ + L D   G++IHA V K G+  DS   V +
Sbjct: 79  REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV-TVAN 137

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
            LV  Y KC G F    G + + F  +  R    WNSLIS      K E + E F+ M  
Sbjct: 138 TLVNLYRKC-GDF----GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 192

Query: 227 EGAEFDSGTLINLLRSTVEL---KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           E  E  S TL++++ +   L   + L +G+ VH   +         +NT L++MY KL  
Sbjct: 193 ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGK 251

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L  +K+L      +D V WN ++S+  Q+    E+LE L  MV  G   D FT  + + +
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311

Query: 344 ISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
            S ++ +  GK++HA  L+NGS D    V ++L+DMYC C+ +   R++FD +  + +  
Sbjct: 312 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL 371

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           W++MI GY  ++   EAL LF  M+   G+  +  T+  ++PACV  GA    + +HG+ 
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K GL+    V   +   Y++ G I++A  +F   K++ +D++TWN+MI+ Y        
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG--KMEDRDLVTWNTMITGYVFSEHHED 489

Query: 522 CFKLYTQMK-----------QSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYG 569
              L  +M+           +  ++P+ IT + +L +C     + +G+ I    +K +  
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA 549

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            + +    +++V++  + G +  +R++   +P K +   W  ++ A  MH   + A
Sbjct: 550 TDVAVG--SALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEA 602



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 217/442 (49%), Gaps = 11/442 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  L+   V++    ++   +  M + G + D+     LL++  +L+ +ELG+ +H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 261 VSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
              +  D ++V   L+++Y K         +FD++S++++V WN +IS+       + +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTM---KNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E   CM+        FT ++ V++ S +   + +  GKQ+HA  LR G +    + N+L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY +   L  ++ +  S   + +V+W++++     ++Q LEAL    EM LEGVE D  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           TI ++LPAC ++  L   K LH Y++K G L+  S V +A+   Y  C  +     +FD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD- 362

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLV 554
             +  + I  WN+MI+ Y+++    +   L+  M++S  +  +  T  G++ ACV +G  
Sbjct: 363 -GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
                I   + +  G +  +    +++++  R G +D A  +   M  + D   W  +++
Sbjct: 422 SRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMIT 479

Query: 615 ACKMHSETELAELTAEKLISME 636
                   E A L   K+ ++E
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLE 501



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 180/375 (48%), Gaps = 17/375 (4%)

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W  ++ +  +S   +E++   + M+  G + D +   A + +++ ++++E GKQ+HA+V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 362 RNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           + G     V+V N+L+++Y +C D     K+FD +  +  VSW+S+I    + ++   AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHV---KYLHGYSMKLG-LNSLSSVNTAI 476
             F  M  E VE    T+++++ AC N+   E +   K +H Y ++ G LNS   +NT +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF-IINTLV 243

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
            + Y K G +  +  L        +D++TWN+++S+  ++    +  +   +M    V P
Sbjct: 244 AM-YGKLGKLASSKVLLGS--FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D  T   +L AC +  ++  G+ +     ++   + +    +++V++      +   R +
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
              M F     +W  +++    +S+ E  +      I ME E+AG   LL+N    AG  
Sbjct: 361 FDGM-FDRKIGLWNAMIAG---YSQNEHDKEALLLFIGME-ESAG---LLANSTTMAGVV 412

Query: 657 NGVAKMRTFLRDRGL 671
               +   F R   +
Sbjct: 413 PACVRSGAFSRKEAI 427


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 210/684 (30%), Positives = 365/684 (53%), Gaps = 12/684 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  +I+      +L+L +++++ Y   G L  +++ F+++   N + +  ++   S+
Sbjct: 177 KKIH-DHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQ 235

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+    +++Y QM     +P   T+  +I++C    D   G ++H  V+K G+D     
Sbjct: 236 NGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIA 295

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +AL+  Y +                KDL S W S+I+   Q G   ++  LF+ M  +G
Sbjct: 296 QNALISMYTRFGQIVHASDVFTMISTKDLIS-WASMITGFTQLGYEIEALYLFRDMFRQG 354

Query: 229 ----AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
                EF  G++ +  RS +E    E GR +H +       +++    +L  MY+K   L
Sbjct: 355 FYQPNEFIFGSVFSACRSLLEP---EFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFL 411

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
             A   F ++   D V WN +I+A+  SG   E++     M+ +G   D  T ++ + + 
Sbjct: 412 PSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCAC 471

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVVSW 403
            +   I  G Q+H+ +++ G D + +V NSL+ MY +C +L+ A  +F  V +   +VSW
Sbjct: 472 GSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSW 531

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++++   + H Q+ E  RLF  M     + D +TI  IL  C  + +LE    +H +S+K
Sbjct: 532 NAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVK 591

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL    SV+  +   YAKCG ++ A ++F   +  + DI++W+S+I  YA+ G   +  
Sbjct: 592 SGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQ--NPDIVSWSSLIVGYAQFGLGHEAL 649

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+  MK   V+P+ +T+LG+L+AC + GLVEEG   +  M+   G  P++EH + MV+L
Sbjct: 650 NLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDL 709

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           L RAG + EA   +K M F PD  +W  LL++CK H   ++AE  AE ++ ++P N+   
Sbjct: 710 LARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAAL 769

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLLSNI+A+ G W  VA++R  ++  G++K PG SWI +   +H F++ D SH Q   IY
Sbjct: 770 VLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIY 829

Query: 704 TILGILELEIMEGRRESSEELKFS 727
           T+L  L L++++   +  + L  S
Sbjct: 830 TMLEDLWLQMLDDGYDPCQRLDIS 853



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 227/435 (52%), Gaps = 7/435 (1%)

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELK 247
           +I++  ++L +  NS I+L  +     ++ + F    +    + +S T  NL+ +   ++
Sbjct: 114 LIKQHSRELST--NSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIR 171

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           SL+ G+ +H   + S+   DL +   +L+MY K  SL+DA+  FD M  ++ V W IMIS
Sbjct: 172 SLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMIS 231

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            Y Q+G   +++ + + M++SG+  D  T  + + +     +I+ G+Q+H +V+++G D+
Sbjct: 232 GYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDH 291

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            +   N+LI MY     +  A  +F  + TK ++SW+SMI G+      +EAL LF +M 
Sbjct: 292 HLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMF 351

Query: 428 LEGV-EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
            +G  + +     ++  AC ++   E  + +HG   K GL        ++   YAK G +
Sbjct: 352 RQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFL 411

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
             A   F   +I+S D+++WN++I+A++  GD ++    + QM  + + PD ITFL LL 
Sbjct: 412 PSAIRAF--YQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLC 469

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC +   + +G  I   + +  G +       S++ +  +  ++ +A  + KD+    + 
Sbjct: 470 ACGSPVTINQGTQIHSYIIK-IGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANL 528

Query: 607 RVWGPLLSACKMHSE 621
             W  +LSAC  H +
Sbjct: 529 VSWNAILSACLQHKQ 543



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 229/482 (47%), Gaps = 5/482 (1%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  +I +C+ +     G+KIH  ++K        + + ++  Y KC    +  K     
Sbjct: 159 TYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTM 218

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + +++ S W  +IS   QNG+   +  ++  M   G   D  T  +++++      ++LG
Sbjct: 219 QLRNVVS-WTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLG 277

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R +H   + S +   L    AL+SMY++   +  A  +F  +S KD + W  MI+ + Q 
Sbjct: 278 RQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQL 337

Query: 313 GFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           G+  E+L L   M R GF + + F   +  S+  ++   E+G+Q+H    + G    V  
Sbjct: 338 GYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFA 397

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             SL DMY +   L  A + F  +++  +VSW+++I  +       EA+  F +M   G+
Sbjct: 398 GCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGL 457

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
             D +T +++L AC +   +     +H Y +K+GL+  ++V  ++   Y KC  +  A  
Sbjct: 458 MPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFN 517

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F +   ++ ++++WN+++SA  +H    + F+L+  M  S+ +PD IT   +L  C   
Sbjct: 518 VFKDVS-ENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAEL 576

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             +E G  +     +S G          ++++  + G +  AR++       PD   W  
Sbjct: 577 ASLEVGNQVHCFSVKS-GLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQ-NPDIVSWSS 634

Query: 612 LL 613
           L+
Sbjct: 635 LI 636


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/661 (30%), Positives = 363/661 (54%), Gaps = 7/661 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            +QIHA   + HGL  N+ + S+LI+ Y   G +S +++VF+  T  N +++  IL    +
Sbjct: 344  RQIHAT-AVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQ 402

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                E+T+ +++ M    +   + T+  V+ +C  L     G ++H   +K G D+   V
Sbjct: 403  NELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFV 462

Query: 169  GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             +A+++ Y K  G  +  K +      KD  S WN+LI     N +  ++  + K M+  
Sbjct: 463  ANAMLDMYSKL-GAIDVAKALFSLIPVKDSVS-WNALIVGLAHNEEEGEAINMLKRMKFY 520

Query: 228  GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
            G   D  +    + +   + ++E G+ +H  ++  + C + +V ++L+ +YSK   +E +
Sbjct: 521  GIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESS 580

Query: 288  KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            + +   +     V  N +I+   Q+    E++EL   +++ GF+   FT  + +S  +  
Sbjct: 581  RKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRP 640

Query: 348  KNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSS 405
             +   GKQ+H   L++   +   S+  SL+ +Y +C+ L  A K+ + V   K +V W++
Sbjct: 641  VSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTA 700

Query: 406  MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
             I GY  +  S+++L +F  M+   V  D  T  ++L AC  + AL   K +HG  +K G
Sbjct: 701  TISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSG 760

Query: 466  LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
              S  +  +A+   Y+KCG +  + E+F E K + ++I+ WNSMI  +AK+G  ++   L
Sbjct: 761  FVSYETATSALMDMYSKCGDVISSFEIFKELK-NRQNIMPWNSMIVGFAKNGYANEALLL 819

Query: 526  YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
            + +M++S ++PD +T LG+L AC +AGL+ EG   F  M + YG  P  +HYA +++LLG
Sbjct: 820  FQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLG 879

Query: 586  RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            R GH+ +A+E++  +PF+ D  +W   L+AC+MH + E  ++ A+KL+ MEP+++  YV 
Sbjct: 880  RGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVF 939

Query: 646  LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            LS+++AAAG W      R  +R++G+ K PGCSWI +G     F   D  HP A +IY +
Sbjct: 940  LSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKQSVFVVQDTHHPDALSIYKM 999

Query: 706  L 706
            L
Sbjct: 1000 L 1000



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 149/545 (27%), Positives = 282/545 (51%), Gaps = 4/545 (0%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            +I + A++G L  ++ +   I   +++ +  ++ + S+ G   +   +YK M  Q + P
Sbjct: 263 TIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMP 322

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T+  ++ + + +  F  G +IHA  VK G D+   VG +L+  Y+K  G   + K +
Sbjct: 323 TRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVK-HGCISDAKKV 381

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
                +     WN+++   VQN   E++ ++F+ MR    E D  T +++L + + L SL
Sbjct: 382 FDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSL 441

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           +LGR VHC+ + +    DL V  A+L MYSKL +++ AK LF  +  KD V WN +I   
Sbjct: 442 DLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGL 501

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
             +    E++ +L  M   G   D  +   A+++ S +  IE GKQ+H+  ++       
Sbjct: 502 AHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNH 561

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
           +V +SLID+Y +  D+  +RK+   V   ++V  +++I G V +++  EA+ LF ++  +
Sbjct: 562 AVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKD 621

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEM 488
           G +    T  +IL  C    +    K +H Y++K   LN  +S+  ++   Y KC  +E 
Sbjct: 622 GFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLED 681

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A +L  EE  D K+++ W + IS YA++G   Q   ++ +M+  DVR D  TF  +L AC
Sbjct: 682 ANKLL-EEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKAC 740

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
                + +G+ I   + +S G+   +   ++++++  + G +  + E+ K++  + +   
Sbjct: 741 SEMAALTDGKEIHGLIVKS-GFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMP 799

Query: 609 WGPLL 613
           W  ++
Sbjct: 800 WNSMI 804



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/570 (21%), Positives = 278/570 (48%), Gaps = 39/570 (6%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +H +Q+H   ++  G   ++   + L+D YA  G +  ++++F+ I  P+++ + +++  
Sbjct: 174 EHGRQVHCD-VLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAG 232

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
             + G Y++ L ++ +M      P + T   +I + +                     S 
Sbjct: 233 YHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLA---------------------SM 271

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             +GDA               + +++R        WN++I+   Q+G   + F L+K M+
Sbjct: 272 GRLGDA---------------RTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMK 316

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            +G      T  ++L +   + + + GR +H  AV      ++ V ++L+++Y K   + 
Sbjct: 317 KQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCIS 376

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DAK +FD  ++K+ V+WN ++  + Q+   +E++++   M R+   AD FT ++ + +  
Sbjct: 377 DAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACI 436

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            + +++ G+Q+H   ++NG D  + V N+++DMY +   ++ A+ +F  +  K  VSW++
Sbjct: 437 NLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNA 496

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I G   +++  EA+ +   MK  G+ +D V+    + AC NI A+E  K +H  S+K  
Sbjct: 497 LIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYN 556

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           + S  +V +++   Y+K G +E + ++     +D+  I+  N++I+   ++    +  +L
Sbjct: 557 VCSNHAVGSSLIDLYSKFGDVESSRKVL--AHVDASSIVPINALITGLVQNNREDEAIEL 614

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + Q+ +   +P   TF  +L+ C        G+ +     +S           S+V +  
Sbjct: 615 FQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYL 674

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +   +++A +L++++P   +   W   +S 
Sbjct: 675 KCKLLEDANKLLEEVPDHKNLVEWTATISG 704



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 145/601 (24%), Positives = 271/601 (45%), Gaps = 52/601 (8%)

Query: 7   PACSLQSGHVK----FLRFPANQTRPHMTATHSFSL-LNLCENPQHLQQIHARYIILHGL 61
           PA S  +G +     +    A+ +R    A H F   L+     +    +HAR + L GL
Sbjct: 26  PATSKAAGELHPTTYYTTLLASLSRECRHAHHPFDAGLHRTHQARACGVLHARILRL-GL 84

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVY 119
                L   L+D Y   G +  + +     T    +S    ++L   ++ G     L  +
Sbjct: 85  PLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARSGSPRDVLDAF 144

Query: 120 KQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           +++       P +     V+ +CS L     G ++H  V+K GF S       LV+ Y K
Sbjct: 145 QRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAK 204

Query: 179 CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           C G  ++ + M           W S+I+   + G+ +++  LF  M   G+  D      
Sbjct: 205 C-GEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQ----- 258

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
                           V CV ++S                + +  L DA+ L  ++    
Sbjct: 259 ----------------VTCVTIISTL--------------ASMGRLGDARTLLKRIRMTS 288

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN +I++Y QSG   E   L   M + G      T  + +S+ + M   + G+Q+HA
Sbjct: 289 TVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHA 348

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +++G D  V V +SLI++Y +   ++ A+K+FD    K +V W++++ G+V ++   E
Sbjct: 349 TAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEE 408

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            +++F  M+   +E D  T +++L AC+N+ +L+  + +H  ++K G+++   V  A+  
Sbjct: 409 TIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLD 468

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y+K G I++A  LF    I  KD ++WN++I   A + +  +   +  +MK   +  D 
Sbjct: 469 MYSKLGAIDVAKALF--SLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDE 526

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEAREL 596
           ++F   + AC N   +E G+ I      S  Y     H   +S+++L  + G ++ +R++
Sbjct: 527 VSFATAINACSNIWAIETGKQIH---SASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKV 583

Query: 597 V 597
           +
Sbjct: 584 L 584



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 120/266 (45%), Gaps = 13/266 (4%)

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTH 413
           +HA +LR G   +  + ++L+D+Y     +  A +          +  + SS++  +   
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134

Query: 414 DQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
               + L  F  ++   G   D   I  +L AC  +GALEH + +H   +K G  S    
Sbjct: 135 GSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFC 194

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
              +   YAKCG ++ A  +FD   I   D I W SMI+ Y + G + Q   L+++M++ 
Sbjct: 195 QAGLVDMYAKCGEVDDARRMFD--GIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKM 252

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD +T + +++   + G + + R + K ++ +     S   + +++    ++G   E
Sbjct: 253 GSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMT-----STVAWNAVIASYSQSGLDSE 307

Query: 593 ARELVKDMP---FKPDARVWGPLLSA 615
              L KDM      P    +  +LSA
Sbjct: 308 VFGLYKDMKKQGLMPTRSTFASILSA 333


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 310/539 (57%), Gaps = 35/539 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN+LI     + K  +   +F  M  E   F +S T   ++++  E+ SL  G+ +H + 
Sbjct: 98  WNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMV 157

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + + F  DL ++ +L+  YS L  L+ A ++F K+ +KD V WN MIS + Q G P+E+L
Sbjct: 158 MKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEAL 217

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           +L   M     R +  T +  +S+ +   ++E+G+     + RNG D  + + N+++DMY
Sbjct: 218 QLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMY 277

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYV---------------------------- 411
            +C  L  AR++FD ++ K +VSW++MI GY                             
Sbjct: 278 VKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALIS 337

Query: 412 ---THDQSLEALRLFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
               + +  EAL +F E++L +  + + VT+ + L AC  +GA++   ++H Y  K G+ 
Sbjct: 338 SYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIK 397

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               + T++   Y+KCG +E A E+F    ++ +D+  W++MI+  A HG       L++
Sbjct: 398 LNFHITTSLIDMYSKCGHLEKALEVF--YSVERRDVFVWSAMIAGLAMHGHGRAAIDLFS 455

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M+++ V+P+ +TF  LL AC ++GLV+EGR+ F +M+  YG  P  +HYA MV++LGRA
Sbjct: 456 KMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRA 515

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++EA EL++ MP  P A VWG LL AC+++   ELAE+   +L+  +  N G YVLLS
Sbjct: 516 GCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLS 575

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           NIYA AGKW+ V+++R  ++  GL+K PGCS IE+  ++HEF   D SHP +  IY+ L
Sbjct: 576 NIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKL 634



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 142/517 (27%), Positives = 254/517 (49%), Gaps = 39/517 (7%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA--NLGLLSLSQQVFNSITSPN 95
           L++ C N +HL+Q+HA +++  GL  +   ++ L  + A  +   L  + +VF+ I  PN
Sbjct: 36  LIDKCANKKHLKQLHA-HMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPN 94

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIH 154
              + T+++  +   +  + LLV+ QM  +S  +P   T+PFVI++ + +   ++G+ IH
Sbjct: 95  LYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIH 154

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             V+K  F S   + ++L+ FY    G  ++   +  +  +     WNS+IS  VQ G  
Sbjct: 155 GMVMKASFGSDLFISNSLIHFYSSL-GDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSP 213

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E++ +LFK M+ME A  +  T++ +L +  +   LE GR        +    +L ++ A+
Sbjct: 214 EEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAM 273

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRV-------------------------------VWN 303
           L MY K  SLEDA+ LFDKM +KD V                                WN
Sbjct: 274 LDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWN 333

Query: 304 IMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
            +IS+Y Q+G PKE+L +     +    + +  T  + +++ + +  ++ G  +H  + +
Sbjct: 334 ALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKK 393

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
            G      +  SLIDMY +C  L  A ++F SV+ + V  WS+MI G   H     A+ L
Sbjct: 394 QGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDL 453

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYA 481
           FS+M+   V+ + VT  N+L AC + G ++  + + +      G+   S     +     
Sbjct: 454 FSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILG 513

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           + GC+E A EL ++  I     + W +++ A   +G+
Sbjct: 514 RAGCLEEAVELIEKMPIVPSASV-WGALLGACRIYGN 549



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 39/421 (9%)

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-ADLFTA 337
           S  +SL+ A  +FD++   +   WN +I A+  S  P + L + + M+    R  + +T 
Sbjct: 75  SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTF 134

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
              + + + + ++  G+ +H  V++      + + NSLI  Y    DL+ A  +F  +  
Sbjct: 135 PFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVE 194

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K +VSW+SMI G+V      EAL+LF  MK+E    + VT++ +L AC     LE  ++ 
Sbjct: 195 KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
             Y  + G++    ++ A+   Y KCG +E A  LFD  K++ KDI++W +MI  YAK G
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFD--KMEEKDIVSWTTMIDGYAKVG 312

Query: 518 DWSQCFKLYTQMKQSDV--------------------------------RPDLITFLGLL 545
           D+    +++  M + D+                                +P+ +T    L
Sbjct: 313 DYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTL 372

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
            AC   G ++ G  I   +K+  G + +     S++++  + GH+++A E+   +  + D
Sbjct: 373 AACAQLGAMDLGGWIHVYIKKQ-GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRD 430

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
             VW  +++   MH     A     K+   E +   N V  +N+  A      V + R F
Sbjct: 431 VFVWSAMIAGLAMHGHGRAAIDLFSKM--QETKVKPNAVTFTNLLCACSHSGLVDEGRLF 488

Query: 666 L 666
            
Sbjct: 489 F 489



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 163/363 (44%), Gaps = 56/363 (15%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCEC-----EDLNCARKIFDSVKTKTVVSWSSMIK 408
           KQ+HA++LR G  +      S   ++  C       L+ A K+FD +    + +W+++I+
Sbjct: 47  KQLHAHMLRTGLFFDPP---SATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            + +  + ++ L +F +M  E     +  T   ++ A   + +L   + +HG  MK    
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S   ++ ++   Y+  G ++ A  +F   KI  KDI++WNSMIS + + G   +  +L+ 
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVF--SKIVEKDIVSWNSMISGFVQGGSPEEALQLFK 221

Query: 528 QMKQSDVRPDLITFLGLLTAC-----------------------------------VNAG 552
           +MK  + RP+ +T +G+L+AC                                   V  G
Sbjct: 222 RMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCG 281

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            +E+ R +F +M+E          + +M++   + G  D AR +   MP + D   W  L
Sbjct: 282 SLEDARRLFDKMEEK-----DIVSWTTMIDGYAKVGDYDAARRVFDVMP-REDITAWNAL 335

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV---AKMRTFLRDR 669
           +S+ + + + + A L   + + +      N V L++  AA  +   +     +  +++ +
Sbjct: 336 ISSYQQNGKPKEA-LAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ 394

Query: 670 GLK 672
           G+K
Sbjct: 395 GIK 397



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 162/351 (46%), Gaps = 43/351 (12%)

Query: 20  RFPANQTRPHM--TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           RFP + T P +   AT   SLL         Q IH   ++      +L +S++LI  Y++
Sbjct: 127 RFPNSYTFPFVIKAATEVSSLLAG-------QAIHG-MVMKASFGSDLFISNSLIHFYSS 178

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
           LG L  +  VF+ I   + + + +++    + G  E+ L ++K+M +++  P   T   V
Sbjct: 179 LGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGV 238

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN---------EKG 188
           + +C+  +D   G      + + G D    + +A+++ Y+KC G  E+         EK 
Sbjct: 239 LSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKC-GSLEDARRLFDKMEEKD 297

Query: 189 MIQ-----------------RKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRM 226
           ++                  R+  D+  R     WN+LIS   QNGK +++  +F+ +++
Sbjct: 298 IVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQL 357

Query: 227 -EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            +  + +  TL + L +  +L +++LG  +H          +  + T+L+ MYSK   LE
Sbjct: 358 NKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLE 417

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
            A  +F  +  +D  VW+ MI+     G  + +++L   M  +  + +  T
Sbjct: 418 KALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVT 468


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 207/661 (31%), Positives = 360/661 (54%), Gaps = 10/661 (1%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L  N ILS++LI  Y   G    ++ VF+ +   N + +  ++   ++       + ++ 
Sbjct: 78  LAHNTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFS 137

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
            M      P +      I +CS L D   G ++HAQ +K    S   V +ALV  Y K  
Sbjct: 138 SMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSK-S 196

Query: 181 GGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFDSGT 235
           G   +   + +R + KDL S W S+I+   Q G+   + ++F+ M  EG     EF  G+
Sbjct: 197 GSVGDGFALFERIRDKDLIS-WGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGS 255

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           +      +V + SLE G  +H V+V     ++     +L  MY++   L+ A+ +F ++ 
Sbjct: 256 VFRA--CSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIE 313

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
             D V WN +I+A+   G   E++ L   M  SG R D  T +A + +      +  G+ 
Sbjct: 314 SPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRS 373

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H+ +++ G    V V NSL+ MY  C D + A  +F     + VV+W+S++   V H  
Sbjct: 374 IHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQH 433

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +  +LFS +      +D +++ N+L A   +G  E VK +H Y+ K+GL   + ++  
Sbjct: 434 LEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNG 493

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +  +YAKCG ++ A +LF E     +D+ +W+S+I  YA+ G   +   L+ +M+   V+
Sbjct: 494 LIDTYAKCGSLDDANKLF-EIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVK 552

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+ +TF+G+LTAC   GLV+EG   +  MK  YG  P++EH + +++LL RAG + EA +
Sbjct: 553 PNHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAK 612

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            V  MPF+PD  +W  LL+A + H++ ++ +  AE +++++P ++  YVLL NIYA++G 
Sbjct: 613 FVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGN 672

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           WN  A+++  +R  G++K+PG SWI++   +  F   D+SHP++D IYT+L ++ LE+++
Sbjct: 673 WNEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEIYTMLEVIGLEMVK 732

Query: 716 G 716
            
Sbjct: 733 A 733



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 170/369 (46%), Gaps = 5/369 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIH    + + L +N     +L D YA    L  +++VF  I SP+ + + +++   S 
Sbjct: 271 EQIHG-VSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSA 329

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + ++++ +M    + P   T   ++ +C        G  IH+ +VKLG      V
Sbjct: 330 KGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIV 389

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+  Y +C   F +   +           WNS+++  VQ+   E  F+LF L+    
Sbjct: 390 SNSLLSMYARCL-DFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSM 448

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  +L N+L ++ EL   E+ + VH  A       D  ++  L+  Y+K  SL+DA 
Sbjct: 449 PSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDAN 508

Query: 289 MLFDKM-SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            LF+ M + +D   W+ +I  Y Q G+ KE+L+L   M   G + +  T +  +++ S +
Sbjct: 509 KLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRV 568

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNS-LIDMYCECEDLNCARKIFDSVKTKT-VVSWSS 405
             ++ G   ++ +           H S ++D+      L+ A K  D +  +  ++ W +
Sbjct: 569 GLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKT 628

Query: 406 MIKGYVTHD 414
           ++    TH+
Sbjct: 629 LLAASRTHN 637


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 187/504 (37%), Positives = 305/504 (60%), Gaps = 3/504 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +N L+   +  G  E +  LF +++ +     D  T+   L+S   + +L++GR +   A
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V      D  V ++L+ MY+    +  A++LFD + +   V+WN +I+AY ++G   E +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           E+   M+  G   D  T ++ V++   + + + GK +   V   G     ++  +LIDMY
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C +L  AR++FD ++++ VV+WS+MI GY   DQ  EAL LFSEM+L  VE + VT++
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC  +GALE  K++H Y  +  L+    + TA+   YAKCGCI+ A E F  E + 
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAF--ESMP 383

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            K+  TW ++I   A +G   +  +L++ M+++ + P  +TF+G+L AC ++ LVEEGR 
Sbjct: 384 VKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRR 443

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M + YG +P  EHY  +V+LLGRAG +DEA + ++ MP +P+A +W  LLS+C +H
Sbjct: 444 HFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVH 503

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              E+ E   ++++S+ P ++G+Y+LLSNIYA+ G+W   A +R  ++DRG++KTPGCS 
Sbjct: 504 KNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSL 563

Query: 680 IEIGKLVHEFWAADQSHPQADAIY 703
           IE+  +V EF+A D  HPQ   IY
Sbjct: 564 IELDGVVVEFFAEDSDHPQLKEIY 587



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 143/305 (46%), Gaps = 9/305 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y +  GL  +  + S+LI  YA+   ++ +Q +F+++     +++  I+    K G + +
Sbjct: 144 YAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWME 203

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + ++K M    +   E T   V+ +C  + D   G+ +   V + G     ++  AL++
Sbjct: 204 VVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALID 263

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y KC      E G  +R F  ++SR    W+++IS   Q  +  ++  LF  M++   E
Sbjct: 264 MYAKC-----GELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVE 318

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T++++L +   L +LE G+ VH           + + TAL+  Y+K   ++DA   
Sbjct: 319 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEA 378

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F+ M  K+   W  +I     +G  +E+LEL   M ++       T I  + + S    +
Sbjct: 379 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLV 438

Query: 351 EWGKQ 355
           E G++
Sbjct: 439 EEGRR 443



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 7/204 (3%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           A Y+   GL +N  L + LID YA  G L  ++++F+ + S + + +  ++   ++  + 
Sbjct: 243 AEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQC 302

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            + L ++ +M L  + P + T   V+ +C+ L    +G+ +H+ + +        +G AL
Sbjct: 303 REALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTAL 362

Query: 173 VEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           V+FY KC   D   E  + M  +        W +LI     NG+  ++ ELF  MR    
Sbjct: 363 VDFYAKCGCIDDAVEAFESMPVKN----SWTWTALIKGMATNGRGREALELFSSMRKASI 418

Query: 230 EFDSGTLINLLRSTVELKSLELGR 253
           E    T I +L +      +E GR
Sbjct: 419 EPTDVTFIGVLMACSHSCLVEEGR 442


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 194/522 (37%), Positives = 305/522 (58%), Gaps = 24/522 (4%)

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +   +  MR    E DS  + ++L++  ++    +G+ +H  +V +    D+ V  AL+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ--SGFPKESL--------------- 319
           MYS+  SL  A++LFDKMS++D V W+ MI AY     GF + S+               
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 320 -----ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
                 L + M+      +  T ++ + S   +  ++ GK++HA +LRNG    +++  +
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           L+DMY +C ++  AR IFDS+K K V++W++MI  Y   +    A +LF +M+  GV  +
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            +T++++L  C   GAL+  K+ H Y  K G+     + TA+   YAKCG I  A  LF 
Sbjct: 333 ELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF- 391

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            E ID +DI TWN M++ Y  HG   +  KL+T+M+   V+P+ ITF+G L AC +AGLV
Sbjct: 392 SEAID-RDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLV 450

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            EG+ +F++M   +G  P  EHY  MV+LLGRAG +DEA ++++ MP  P+  +WG +L+
Sbjct: 451 VEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLA 510

Query: 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
           ACK+H  + + EL A +L+++EP+N G  VL+SNIYAAA +WN VA MR  ++D G+KK 
Sbjct: 511 ACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKE 570

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           PG S IE+  LVH+F   D +HP  + I  +L  +  ++ E 
Sbjct: 571 PGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEA 612



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 170/349 (48%), Gaps = 28/349 (8%)

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
           P+ +L     M +     D F   + + + S +     GK++H   ++NG    V V N+
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT-----HDQSL------------ 417
           L+ MY EC  L  AR +FD +  + VVSWS+MI+ Y+T       +S+            
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 418 -----EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
                E  RLF  M  E V  + +T+++++ +C  +GA++  K LH Y ++ G     ++
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLAL 269

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            TA+   Y KCG I  A  +FD  K  +KD++TW +MISAYA+       F+L+ QM+ +
Sbjct: 270 ATALVDMYGKCGEIRSARAIFDSMK--NKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            VRP+ +T + LL+ C   G ++ G+  F    +  G E       +++++  + G +  
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGK-WFHAYIDKQGVEVDVILKTALIDMYAKCGDISG 386

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMH--SETELAELTAEKLISMEPEN 639
           A+ L  +     D   W  +++   MH   E  L   T  + + ++P +
Sbjct: 387 AQRLFSE-AIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND 434



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 170/337 (50%), Gaps = 23/337 (6%)

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK- 193
           P V+++CS +     G++IH   VK G  S   V +AL++ Y +C G   + + +  +  
Sbjct: 113 PSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSEC-GSLVSARLLFDKMS 171

Query: 194 -----------------FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
                            F     R    W ++I+  ++    E+   LF  M  E    +
Sbjct: 172 ERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPN 231

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T+++L+ S   + +++LG+ +H   + + F   L++ TAL+ MY K   +  A+ +FD
Sbjct: 232 DITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFD 291

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
            M +KD + W  MISAY Q+     + +L + M  +G R +  T ++ +S  +    ++ 
Sbjct: 292 SMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDM 351

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           GK  HA + + G +  V +  +LIDMY +C D++ A+++F     + + +W+ M+ GY  
Sbjct: 352 GKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGM 411

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           H    +AL+LF+EM+  GV+ + +T I  L AC + G
Sbjct: 412 HGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAG 448



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 178/369 (48%), Gaps = 14/369 (3%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           + AR +      ++++  S +I +Y  L     SQ+   SI S  +++ G I  N  + G
Sbjct: 161 VSARLLFDKMSERDVVSWSTMIRAYITL-FYGFSQR---SIVSWTAMIAGYIRCNDLEEG 216

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
           E      ++ +M  ++++P + T   +I SC  +     G+++HA +++ GF     +  
Sbjct: 217 ER-----LFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALAT 271

Query: 171 ALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           ALV+ Y KC G   + + +    K KD+ + W ++IS   Q    + +F+LF  MR  G 
Sbjct: 272 ALVDMYGKC-GEIRSARAIFDSMKNKDVMT-WTAMISAYAQANCIDYAFQLFVQMRDNGV 329

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             +  T+++LL       +L++G+  H          D+ + TAL+ MY+K   +  A+ 
Sbjct: 330 RPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQR 389

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           LF +  D+D   WN+M++ Y   G+ +++L+L   M   G + +  T I A+ + S    
Sbjct: 390 LFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGL 449

Query: 350 IEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMI 407
           +  GK +   ++ + G   +V  +  ++D+      L+ A K+ +S+  T  +  W +M+
Sbjct: 450 VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509

Query: 408 KGYVTHDQS 416
                H  S
Sbjct: 510 AACKIHKNS 518



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 121/271 (44%), Gaps = 22/271 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA YI+ +G   +L L++ L+D Y   G +  ++ +F+S+ + + + +  ++   ++
Sbjct: 252 KRLHA-YILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQ 310

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               +    ++ QM    + P E T   ++  C+       G+  HA + K G +    +
Sbjct: 311 ANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVIL 370

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
             AL++ Y KC      +    QR F +   R    WN +++    +G  EK+ +LF  M
Sbjct: 371 KTALIDMYAKC-----GDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEM 425

Query: 225 RMEGAEFDSGTLINLLRS------TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
              G + +  T I  L +       VE K L   +++H   +V      +     ++ + 
Sbjct: 426 ETLGVKPNDITFIGALHACSHAGLVVEGKGL-FEKMIHDFGLVP----KVEHYGCMVDLL 480

Query: 279 SKLASLEDAKMLFDKMSDKDRV-VWNIMISA 308
            +   L++A  + + M     + +W  M++A
Sbjct: 481 GRAGLLDEAYKMIESMPVTPNIAIWGAMLAA 511


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 336/605 (55%), Gaps = 9/605 (1%)

Query: 104 KNLSKF---GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVK 159
           K LS +   GE  + +  ++ M ++S  P +     VI S    L+ +  G++IH  VV+
Sbjct: 267 KTLSSYLQAGEGWEAVDCFRDM-IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR 325

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
            G+D F  V ++ +  Y+K        +   Q K  DL S WN++IS   ++G  E S  
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLIS-WNTVISGCARSGLEECSLR 384

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELK-SLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
           LF  +   G   D  T+ ++LR+   L+ S  +GR VH  A+ +    D  V+TAL+ +Y
Sbjct: 385 LFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVY 444

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           SK   +E+A++LF      D   WN M+  +  S   +E+L L   M   G +AD  T  
Sbjct: 445 SKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFA 504

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
            A  +   +  ++ GKQ+HA V++    Y + V + ++DMY +C ++  ARK+F+ + + 
Sbjct: 505 NAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSP 564

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
             V+W+++I G V + +  +AL  + +M+L GV+ D  T   ++ AC  + ALE  K +H
Sbjct: 565 DDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIH 624

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              MKL       V T++   YAKCG IE A  LF   +++++ +  WN+MI   A+HG+
Sbjct: 625 ANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLF--RRMNTRSVALWNAMIVGLAQHGN 682

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
             +    + +MK   V PD +TF+G+L+AC ++GL  +    F  M+++YG EP  EHY+
Sbjct: 683 AEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYS 742

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
            +V+ L RAGH+ EA ++V  MPF+  A ++  LL+AC++  + E  E  AEKL +M+P 
Sbjct: 743 CLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPS 802

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           ++  YVLLSNIYAAA +W      R  ++   +KK PG SWI++   VH F A D+SH +
Sbjct: 803 DSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEE 862

Query: 699 ADAIY 703
            D IY
Sbjct: 863 TDLIY 867



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 217/426 (50%), Gaps = 26/426 (6%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L++  +  HL+   QIH   ++  G  Q + ++++ I+ Y   G ++ ++++F  +   
Sbjct: 303 ILSVVASLNHLELGKQIHGA-VVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEV 361

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD-FISGEKI 153
           + + + T++   ++ G  E +L ++  +    + P + T   V+R+CS L + +  G ++
Sbjct: 362 DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 154 HAQVVKLG--FDSFDDVGDALVEFYIKCDGG--------FENEKGMIQRKFKDLKSRWNS 203
           H   +K G   DSF  V  AL++ Y K  GG        F N+ G       DL S WN+
Sbjct: 422 HTCALKAGIVLDSF--VSTALIDVYSK--GGKMEEAELLFHNQDGF------DLAS-WNA 470

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           ++     +    ++  LF LM   G + D  T  N  ++   L  L+ G+ +H V +   
Sbjct: 471 MMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMR 530

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  DL V + +L MY K   ++ A+ +F+++   D V W  +IS   ++G  +++L    
Sbjct: 531 FHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYH 590

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M  +G + D +T    V + S +  +E GKQ+HAN+++    +   V  SL+DMY +C 
Sbjct: 591 QMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCG 650

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           ++  A  +F  + T++V  W++MI G   H  + EAL  F+EMK  GV  D VT I +L 
Sbjct: 651 NIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLS 710

Query: 444 ACVNIG 449
           AC + G
Sbjct: 711 ACSHSG 716



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 155/604 (25%), Positives = 278/604 (46%), Gaps = 50/604 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS----LLYGTILK 104
           ++ HA  I+  GL+ +  +++NLI  YA  G L  ++++F+   +P S    + Y  IL 
Sbjct: 33  KRTHA-VIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFD--ITPQSDRDLVTYNAILA 89

Query: 105 NLSKFGE---YEKT---LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
             +  GE    EKT     +++ +    M     T   + + C       + E +    V
Sbjct: 90  AYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAV 149

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
           K+G      V  ALV  Y K     E      +   +D+   WN ++   V+ G  ++  
Sbjct: 150 KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDV-VLWNVMMKAYVEMGAGDEVL 208

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
            LF      G   D           V ++++ +G     V   + F ++L    A     
Sbjct: 209 GLFSAFHRSGLRPD----------CVSVRTILMG-----VGKKTVFERELEQVRAY---- 249

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
                   A  LF    D D  VWN  +S+Y Q+G   E+++    M++S    D  T I
Sbjct: 250 --------ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYI 301

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             +S ++++ ++E GKQ+H  V+R G D  VSV NS I+MY +   +N AR++F  +K  
Sbjct: 302 VILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEV 361

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYL 457
            ++SW+++I G         +LRLF ++   G+  D  TI ++L AC ++     V + +
Sbjct: 362 DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H  ++K G+   S V+TA+   Y+K G +E A  LF  +  D  D+ +WN+M+  +    
Sbjct: 422 HTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQ--DGFDLASWNAMMHGFTVSD 479

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQEH 576
           ++ +  +L++ M +   + D ITF     A      +++G+ I    +K  + Y+     
Sbjct: 480 NYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFV-- 537

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE--KLIS 634
            + ++++  + G M  AR++   +P  PD   W  ++S C  + E E A  T    +L  
Sbjct: 538 ISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQALFTYHQMRLAG 596

Query: 635 MEPE 638
           ++P+
Sbjct: 597 VQPD 600



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 181/411 (44%), Gaps = 38/411 (9%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK--GMIQRKFKDLKSRWNS 203
           D I G++ HA +V  G +    V + L+  Y KC   F   K   +  +  +DL + +N+
Sbjct: 28  DLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVT-YNA 86

Query: 204 LISLAVQNG------KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
           +++     G      K+ ++F +F+L+R         TL  L +  +   S      +  
Sbjct: 87  ILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQG 146

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
            AV      D+ V  AL+++Y+K   + +A++LFD+M  +D V+WN+M+ AY + G   E
Sbjct: 147 YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDE 206

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
            L L     RSG R D  +    +  +   K   + +++           QV  +     
Sbjct: 207 VLGLFSAFHRSGLRPDCVSVRTILMGVG--KKTVFERELE----------QVRAY----- 249

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
                     A K+F       V  W+  +  Y+   +  EA+  F +M    V  D +T
Sbjct: 250 ----------ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLT 299

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
            I IL    ++  LE  K +HG  ++ G +   SV  +    Y K G +  A  +F + K
Sbjct: 300 YIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK 359

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
               D+I+WN++IS  A+ G      +L+  + +S + PD  T   +L AC
Sbjct: 360 --EVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRAC 408



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 39/387 (10%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD--KMS 295
           ++LR  +    L LG+  H V V S    D  V   L++MY+K  SL  A+ LFD    S
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 296 DKDRVVWNIMISAYYQSG------FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           D+D V +N +++AY  +G         E+  +   + +S       T            +
Sbjct: 78  DRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGS 137

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
               + +    ++ G  + V V  +L+++Y + + +  AR +FD +  + VV W+ M+K 
Sbjct: 138 PSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKA 197

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           YV      E L LFS     G+  D V++  IL         E             L  +
Sbjct: 198 YVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFER-----------ELEQV 246

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
            +  T +F+    C               D  D+  WN  +S+Y + G+  +    +  M
Sbjct: 247 RAYATKLFV----CD--------------DDSDVTVWNKTLSSYLQAGEGWEAVDCFRDM 288

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
            +S V  D +T++ +L+   +   +E G+ I   +   +G++       S +N+  +AG 
Sbjct: 289 IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR-FGWDQFVSVANSAINMYVKAGS 347

Query: 590 MDEARELVKDMPFKPDARVWGPLLSAC 616
           ++ AR +   M  + D   W  ++S C
Sbjct: 348 VNYARRMFGQMK-EVDLISWNTVISGC 373


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  364 bits (935), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 384/681 (56%), Gaps = 27/681 (3%)

Query: 49  QQIHAR-YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +QIHA  Y   +G+  ++ +++ L++ Y   G      +VF+ I+  N + + +++ +L 
Sbjct: 117 KQIHAHVYKFGYGV-DSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 175

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL---DFISGEKIHAQVVKLG-FD 163
            F ++E  L  ++ M  +++ P+  T   V+ +CS L      + G+++HA  ++ G  +
Sbjct: 176 SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 235

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           SF  + + LV  Y K  G   + K ++     +DL + WN+++S   QN +  ++ E  +
Sbjct: 236 SF--IINTLVAMYGKL-GKLASSKVLLGSFGGRDLVT-WNTVLSSLCQNEQLLEALEYLR 291

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKL 281
            M +EG E D  T+ ++L +   L+ L  G+ +H  A+ +    + S V +AL+ MY   
Sbjct: 292 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 351

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAIAA 340
             +   + +FD M D+   +WN MI+ Y Q+   KE+L L + M  S G  A+  T    
Sbjct: 352 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 411

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V +          + +H  V++ G D    V N+L+DMY     ++ A +IF  ++ + +
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMK-LE----------GVEVDFVTIINILPACVNIG 449
           V+W++MI GYV  +   +AL L  +M+ LE           ++ + +T++ ILP+C  + 
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL   K +H Y++K  L +  +V +A+   YAKCGC++M+ ++FD+  I  K++ITWN +
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ--IPQKNVITWNVI 589

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I AY  HG+  +   L   M    V+P+ +TF+ +  AC ++G+V+EG  IF  MK  YG
Sbjct: 590 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 649

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELT 628
            EPS +HYA +V+LLGRAG + EA +L+  MP   + A  W  LL A ++H+  E+ E+ 
Sbjct: 650 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A+ LI +EP  A +YVLL+NIY++AG W+   ++R  ++++G++K PGCSWIE G  VH+
Sbjct: 710 AQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHK 769

Query: 689 FWAADQSHPQADAIYTILGIL 709
           F A D SHPQ++ +   L  L
Sbjct: 770 FVAGDSSHPQSEKLSGYLETL 790



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 269/536 (50%), Gaps = 35/536 (6%)

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGD 170
            + +L Y  M +  + P    +P ++++ + L D   G++IHA V K G+  DS   V +
Sbjct: 79  REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV-TVAN 137

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
            LV  Y KC G F    G + + F  +  R    WNSLIS      K E + E F+ M  
Sbjct: 138 TLVNLYRKC-GDF----GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 192

Query: 227 EGAEFDSGTLINLLRSTVEL---KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           E  E  S TL++++ +   L   + L +G+ VH   +         +NT L++MY KL  
Sbjct: 193 ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGK 251

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L  +K+L      +D V WN ++S+  Q+    E+LE L  MV  G   D FT  + + +
Sbjct: 252 LASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPA 311

Query: 344 ISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
            S ++ +  GK++HA  L+NGS D    V ++L+DMYC C+ +   R++FD +  + +  
Sbjct: 312 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGL 371

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           W++MI GY  ++   EAL LF  M+   G+  +  T+  ++PACV  GA    + +HG+ 
Sbjct: 372 WNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFV 431

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K GL+    V   +   Y++ G I++A  +F   K++ +D++TWN+MI+ Y        
Sbjct: 432 VKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG--KMEDRDLVTWNTMITGYVFSEHHED 489

Query: 522 CFKLYTQMK-----------QSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYG 569
              L  +M+           +  ++P+ IT + +L +C     + +G+ I    +K +  
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA 549

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            + +    +++V++  + G +  +R++   +P K +   W  ++ A  MH   + A
Sbjct: 550 TDVAVG--SALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEA 602



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 217/442 (49%), Gaps = 11/442 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  L+   V++    ++   +  M + G + D+     LL++  +L+ +ELG+ +H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 261 VSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
              +  D ++V   L+++Y K         +FD++S++++V WN +IS+       + +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTM---KNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E   CM+        FT ++ V++ S +   + +  GKQ+HA  LR G +    + N+L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY +   L  ++ +  S   + +V+W++++     ++Q LEAL    EM LEGVE D  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           TI ++LPAC ++  L   K LH Y++K G L+  S V +A+   Y  C  +     +FD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFD- 362

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLV 554
             +  + I  WN+MI+ Y+++    +   L+  M++S  +  +  T  G++ ACV +G  
Sbjct: 363 -GMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
                I   + +  G +  +    +++++  R G +D A  +   M  + D   W  +++
Sbjct: 422 SRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMIT 479

Query: 615 ACKMHSETELAELTAEKLISME 636
                   E A L   K+ ++E
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLE 501



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 180/375 (48%), Gaps = 17/375 (4%)

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W  ++ +  +S   +E++   + M+  G + D +   A + +++ ++++E GKQ+HA+V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 362 RNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           + G     V+V N+L+++Y +C D     K+FD +  +  VSW+S+I    + ++   AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHV---KYLHGYSMKLG-LNSLSSVNTAI 476
             F  M  E VE    T+++++ AC N+   E +   K +H Y ++ G LNS   +NT +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF-IINTLV 243

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
            + Y K G +  +  L        +D++TWN+++S+  ++    +  +   +M    V P
Sbjct: 244 AM-YGKLGKLASSKVLLGS--FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D  T   +L AC +  ++  G+ +     ++   + +    +++V++      +   R +
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
              M F     +W  +++    +S+ E  +      I ME E+AG   LL+N    AG  
Sbjct: 361 FDGM-FDRKIGLWNAMIAG---YSQNEHDKEALLLFIGME-ESAG---LLANSTTMAGVV 412

Query: 657 NGVAKMRTFLRDRGL 671
               +   F R   +
Sbjct: 413 PACVRSGAFSRKEAI 427


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  364 bits (935), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 296/509 (58%), Gaps = 5/509 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I     N    ++  L+  M   G + D+ T   +L++  +L   E+GR VH + V
Sbjct: 92  WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVV 151

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           V    +D+ V  ++LSMY K   +E A+++FD+M  +D   WN M+S + ++G  + + E
Sbjct: 152 VGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFE 211

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS---VHNSLID 377
           +   M R GF  D  T +A +S+   + +++ GK++H  V+RNG   +V    + NS+ID
Sbjct: 212 VFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIID 271

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MYC CE ++CARK+F+ ++ K VVSW+S+I GY     + +AL LF  M + G   D VT
Sbjct: 272 MYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVT 331

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           +I++L AC  I AL     +  Y +K G      V TA+   YA CG +  A  +FDE  
Sbjct: 332 VISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDE-- 389

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  K++     M++ +  HG   +   ++ +M    V PD   F  +L+AC ++GLV+EG
Sbjct: 390 MPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEG 449

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           + IF +M   Y  EP   HY+ +V+LLGRAG++DEA  ++++M  KP+  VW  LLSAC+
Sbjct: 450 KEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACR 509

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H   +LA ++A+KL  + P+    YV LSNIYAA  +W  V  +R  +  R L+K P  
Sbjct: 510 LHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSY 569

Query: 678 SWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           S++E+ K+VH+F+  D SH Q+D IY  L
Sbjct: 570 SFVELNKMVHQFFVGDTSHEQSDDIYAKL 598



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/442 (29%), Positives = 223/442 (50%), Gaps = 17/442 (3%)

Query: 28  PHMTATHSF------SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANL 78
           P  ++T +F      +LL    N + L Q   +HA       L +N  L++ L   YA  
Sbjct: 12  PKPSSTSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVC 71

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           G +  +Q +F+ I   NS L+ ++++  +      + L +Y +M      P   TYPFV+
Sbjct: 72  GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVL 131

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDL 197
           ++C  LL    G K+HA VV  G +    VG++++  Y K  G  E  + +  R   +DL
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKF-GDVEAARVVFDRMLVRDL 190

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
            S WN+++S  V+NG++  +FE+F  MR +G   D  TL+ LL +  ++  L++G+ +H 
Sbjct: 191 TS-WNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHG 249

Query: 258 VAVVSD----FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
             V +      C    +N+ ++ MY    S+  A+ LF+ +  KD V WN +IS Y + G
Sbjct: 250 YVVRNGESGRVCNGFLMNS-IIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCG 308

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
              ++LEL   MV  G   D  T I+ +++ + +  +  G  + + V++ G    V V  
Sbjct: 309 DAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGT 368

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +LI MY  C  L CA ++FD +  K + + + M+ G+  H +  EA+ +F EM  +GV  
Sbjct: 369 ALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTP 428

Query: 434 DFVTIINILPACVNIGALEHVK 455
           D      +L AC + G ++  K
Sbjct: 429 DEGIFTAVLSACSHSGLVDEGK 450



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 188/383 (49%), Gaps = 15/383 (3%)

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHC-VAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           + FDS     LL+S    KSL     +H  V       ++  + T L + Y+    +  A
Sbjct: 18  STFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYA 77

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD++  K+  +WN MI  Y  +  P  +L L + M+  G + D FT    + +   +
Sbjct: 78  QHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDL 137

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
              E G+++HA V+  G +  V V NS++ MY +  D+  AR +FD +  + + SW++M+
Sbjct: 138 LLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMM 197

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            G+V + ++  A  +F +M+ +G   D  T++ +L AC ++  L+  K +HGY ++ G +
Sbjct: 198 SGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGES 257

Query: 468 SLSS---VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
                  +  +I   Y  C  +  A +LF  E +  KD+++WNS+IS Y K GD  Q  +
Sbjct: 258 GRVCNGFLMNSIIDMYCNCESVSCARKLF--EGLRVKDVVSWNSLISGYEKCGDAFQALE 315

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY----GYEPSQEHYASM 580
           L+ +M      PD +T + +L AC     +  G  +     +SY    GY  +     ++
Sbjct: 316 LFGRMVVVGAVPDEVTVISVLAACNQISALRLGATV-----QSYVVKRGYVVNVVVGTAL 370

Query: 581 VNLLGRAGHMDEARELVKDMPFK 603
           + +    G +  A  +  +MP K
Sbjct: 371 IGMYANCGSLVCACRVFDEMPEK 393


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/669 (31%), Positives = 370/669 (55%), Gaps = 12/669 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + +HAR +   G+ Q     +N L++ YA LG L+ ++++F+ +   N + + T+++  +
Sbjct: 67  RAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYA 126

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGFD 163
             G +E+   +++++  +      +   FV+ +   +L  +        IHA   KLG D
Sbjct: 127 LRGGFEEAAGLFRRLQRE----GHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHD 182

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               VG +L++ Y  C G   + + +           W +++S   +N   E +   F  
Sbjct: 183 RNAFVGSSLIDAYSLC-GAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSK 241

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           MRM GA+ +   L ++L++ V L S  LG+ +H  AV +    +  V  ALL MY+K   
Sbjct: 242 MRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGY 301

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +EDA+ +F+ +   D ++W+ +IS Y QS   +++ E+ + M+RS    + F+    + +
Sbjct: 302 IEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQA 361

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +  ++ G+Q+H  V++ G + ++ V N+L+D+Y +C ++  + +IF S++    VSW
Sbjct: 362 CANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSW 421

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GY     + +AL +F EM+   V    VT  ++L AC N  +++H   +H    K
Sbjct: 422 NTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEK 481

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
              N+ + V  ++  +YAKCGCI  A ++F  E I   D+++WN++IS YA HG  +   
Sbjct: 482 STFNNDTIVCNSLIDTYAKCGCIRDALKVF--ESIIQCDVVSWNAIISGYALHGRATDAL 539

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           +L+ +M +SD +P+ +TF+ LL+ C + GLV +G  +F  M   +  +PS +HY  +V L
Sbjct: 540 ELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRL 599

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAG +++A + + D+P  P   VW  LLS+C +H    L + +AEK++ +EP++   Y
Sbjct: 600 LGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTY 659

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLLSN+YAAAG  + VA +R  +R+ G+KK  G SW+EI   VH F      HP    I 
Sbjct: 660 VLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIIN 719

Query: 704 TILGILELE 712
            +L  L L+
Sbjct: 720 AMLEWLNLK 728


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 384/681 (56%), Gaps = 27/681 (3%)

Query: 49  QQIHAR-YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +QIHA  Y   +G+  ++ +++ L++ Y   G      +VF+ I+  N + + +++ +L 
Sbjct: 30  KQIHAHVYKFGYGV-DSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 88

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL---DFISGEKIHAQVVKLG-FD 163
            F ++E  L  ++ M  +++ P+  T   V+ +CS L      + G+++HA  ++ G  +
Sbjct: 89  SFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELN 148

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           SF  + + LV  Y K  G   + K ++     +DL + WN+++S   QN +  ++ E  +
Sbjct: 149 SF--IINTLVAMYGKL-GKLASSKVLLGSFGGRDLVT-WNTVLSSLCQNEQLLEALEYLR 204

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKL 281
            M +EG E D  T+ ++L +   L+ L  G+ +H  A+ +    + S V +AL+ MY   
Sbjct: 205 EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 264

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAIAA 340
             +   + +FD M D+   +WN MI+ Y Q+   KE+L L + M  S G  A+  T    
Sbjct: 265 KQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGV 324

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V +          + +H  V++ G D    V N+L+DMY     ++ A +IF  ++ + +
Sbjct: 325 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 384

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMK-LE----------GVEVDFVTIINILPACVNIG 449
           V+W++MI GYV  +   +AL L  +M+ LE           ++ + +T++ ILP+C  + 
Sbjct: 385 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 444

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL   K +H Y++K  L +  +V +A+   YAKCGC++M+ ++FD+  I  K++ITWN +
Sbjct: 445 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ--IPQKNVITWNVI 502

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I AY  HG+  +   L   M    V+P+ +TF+ +  AC ++G+V+EG  IF  MK  YG
Sbjct: 503 IMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYG 562

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELT 628
            EPS +HYA +V+LLGRAG + EA +L+  MP   + A  W  LL A ++H+  E+ E+ 
Sbjct: 563 VEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 622

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A+ LI +EP  A +YVLL+NIY++AG W+   ++R  ++++G++K PGCSWIE G  VH+
Sbjct: 623 AQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHK 682

Query: 689 FWAADQSHPQADAIYTILGIL 709
           F A D SHPQ++ +   L  L
Sbjct: 683 FVAGDSSHPQSEKLSGYLETL 703



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 265/527 (50%), Gaps = 35/527 (6%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKC 179
           M +  + P    +P ++++ + L D   G++IHA V K G+  DS   V + LV  Y KC
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV-TVANTLVNLYRKC 59

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
            G F    G + + F  +  R    WNSLIS      K E + E F+ M  E  E  S T
Sbjct: 60  -GDF----GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 114

Query: 236 LINLLRSTVEL---KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
           L++++ +   L   + L +G+ VH   +         +NT L++MY KL  L  +K+L  
Sbjct: 115 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLG 173

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
               +D V WN ++S+  Q+    E+LE L  MV  G   D FT  + + + S ++ +  
Sbjct: 174 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRT 233

Query: 353 GKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           GK++HA  L+NGS D    V ++L+DMYC C+ +   R++FD +  + +  W++MI GY 
Sbjct: 234 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 293

Query: 412 THDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
            ++   EAL LF  M+   G+  +  T+  ++PACV  GA    + +HG+ +K GL+   
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            V   +   Y++ G I++A  +F   K++ +D++TWN+MI+ Y           L  +M+
Sbjct: 354 FVQNTLMDMYSRLGKIDIAMRIFG--KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 411

Query: 531 -----------QSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQEHYA 578
                      +  ++P+ IT + +L +C     + +G+ I    +K +   + +    +
Sbjct: 412 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG--S 469

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++V++  + G +  +R++   +P K +   W  ++ A  MH   + A
Sbjct: 470 ALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGNGQEA 515



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 169/352 (48%), Gaps = 17/352 (4%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECE 383
           M+  G + D +   A + +++ ++++E GKQ+HA+V + G     V+V N+L+++Y +C 
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           D     K+FD +  +  VSW+S+I    + ++   AL  F  M  E VE    T+++++ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 444 ACVNIGALEHV---KYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           AC N+   E +   K +H Y ++ G LNS   +NT + + Y K G +  +  L       
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSF-IINTLVAM-YGKLGKLASSKVLLG--SFG 176

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D++TWN+++S+  ++    +  +   +M    V PD  T   +L AC +  ++  G+ 
Sbjct: 177 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +     ++   + +    +++V++      +   R +   M F     +W  +++    +
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG---Y 292

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           S+ E  +      I ME E+AG   LL+N    AG      +   F R   +
Sbjct: 293 SQNEHDKEALLLFIGME-ESAG---LLANSTTMAGVVPACVRSGAFSRKEAI 340


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/563 (35%), Positives = 317/563 (56%), Gaps = 12/563 (2%)

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
           + G  +H  +VK GF +   V +AL+ FY K +     E  ++   F ++  R    WNS
Sbjct: 1   MDGLVVHGYLVKYGFGAQCAVCNALISFYAKSN---RIEDALMV--FDEMPQRDIISWNS 55

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +I     NG  +K+ ELF  M +EG E DS TL++++ + V+     +G +VH  +V + 
Sbjct: 56  IIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTG 115

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              + S+  ALL MYS  +       +F  M  K+ V W  MI++Y ++G   +   L  
Sbjct: 116 LISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQ 175

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M   G R D+F   +A+ + +  ++++ GK +H   +RNG +  + V N+L++MY +C 
Sbjct: 176 EMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCG 235

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  AR IFD V  K  +SW+++I GY   + + EA  LF+EM L+ +  + VT+  ILP
Sbjct: 236 YMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILP 294

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           A  ++ +LE  + +H Y+++ G    + V  A+   Y KCG + +A  LFD   + +K++
Sbjct: 295 AAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFD--MLTNKNL 352

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           I+W  MI+ Y  HG       L+ QMK S ++PD  +F  +L AC ++GL +EG   F  
Sbjct: 353 ISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNA 412

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M+  +  EP  +HYA MV+LL   G++ EA E ++ MP +PD+ +W  LL  C++H   +
Sbjct: 413 MRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVK 472

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           LAE  AE +  +EPEN G YVLL+NIYA A +W  V K++  +  RGL++  GCSWIE+ 
Sbjct: 473 LAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVR 532

Query: 684 KLVHEFWAADQSHPQADAIYTIL 706
              H F+A +++HPQ   I   L
Sbjct: 533 GKAHIFFAENRNHPQGMRIAEFL 555



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 199/396 (50%), Gaps = 4/396 (1%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y++ +G      + + LI  YA    +  +  VF+ +   + + + +I+   +  G Y+K
Sbjct: 9   YLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDK 68

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSC-SCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
            + ++ +M L+       T   V+ +C      FI G  +H   V+ G  S   +G+AL+
Sbjct: 69  AVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGG-VVHGYSVRTGLISETSLGNALL 127

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
           + Y  C       K     + K++ S W ++I+   + G  +K   LF+ M +EG   D 
Sbjct: 128 DMYSNCSDWRSTNKIFRNMEQKNVVS-WTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDV 186

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
             + + L +    +SL+ G+ VH  A+ +   + L V  AL+ MY K   +E+A+ +FD 
Sbjct: 187 FAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDH 246

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           ++ KD + WN +I  Y +S    E+  L   M+    R +  T    + + +++ ++E G
Sbjct: 247 VTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERG 305

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           ++MHA  +R G      V N+L+DMY +C  L  AR++FD +  K ++SW+ MI GY  H
Sbjct: 306 REMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMH 365

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +  +A+ LF +MK  G++ D  +   IL AC + G
Sbjct: 366 GRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSG 401



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 176/364 (48%), Gaps = 10/364 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y +  GL     L + L+D Y+N      + ++F ++   N + +  ++ + ++ G ++K
Sbjct: 110 YSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDK 169

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
              ++++M L+ + P        + + +       G+ +H   ++ G +    V +AL+E
Sbjct: 170 VAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALME 229

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+KC G  E  + +     K     WN+LI    ++  + ++F LF  M ++    ++ 
Sbjct: 230 MYVKC-GYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAV 287

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+  +L +   L SLE GR +H  AV   + +D  V  AL+ MY K  +L  A+ LFD +
Sbjct: 288 TMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDML 347

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL--FTAIAAVSSISTMKNIEW 352
           ++K+ + W IMI+ Y   G  ++++ L   M  SG + D   F+AI    S S +++  W
Sbjct: 348 TNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGW 407

Query: 353 GKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKG 409
                 N +RN    +  +  +  ++D+ C   +L  A +  +++  +   S W S+++G
Sbjct: 408 ---RFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRG 464

Query: 410 YVTH 413
              H
Sbjct: 465 CRIH 468



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/94 (20%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA Y +  G  ++  +++ L+D Y   G L L++++F+ +T+ N + +  ++     
Sbjct: 306 REMHA-YAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGM 364

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            G     + +++QM    + P   ++  ++ +CS
Sbjct: 365 HGRGRDAIALFEQMKGSGIQPDAGSFSAILYACS 398


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 227/729 (31%), Positives = 370/729 (50%), Gaps = 82/729 (11%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID---SYANLGLLSLSQQVFNSITS 93
           SLL  C+ P+H +Q+ ++  IL GL  +   +S LI+       L     S ++FN + +
Sbjct: 8   SLLQSCKCPRHFKQLLSQ-TILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRN 66

Query: 94  PNSLLYGTILK-NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           PN+  + TI++ +L       + LL YK        P   TYP +++ C+  +    G +
Sbjct: 67  PNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQ 126

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +HA  V  GFD    V + L+  Y  C       +   +    DL S WN+L++  VQ G
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVS-WNTLLAGYVQAG 185

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           + E++  +F+ M                R+T+                          + 
Sbjct: 186 EVEEAERVFEGMPE--------------RNTI-------------------------ASN 206

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDR--VVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           ++++++ +   +E A+ +F+ +  ++R  V W+ M+S Y Q+   +E+L L + M  SG 
Sbjct: 207 SMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGV 266

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D    ++A+S+ S + N+E G+ +H   ++ G +  VS+ N+LI +Y  C ++  AR+
Sbjct: 267 AVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARR 326

Query: 391 IFD--------------------------------SVKTKTVVSWSSMIKGYVTHDQSLE 418
           IFD                                S+  K VVSWS+MI GY  H+   E
Sbjct: 327 IFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSE 386

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF EM+L GV  D   +++ + AC ++  L+  K++H Y  +  L     ++T +  
Sbjct: 387 ALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLID 446

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCGC+E A E+F    ++ K + TWN++I   A +G   Q   ++  MK++   P+ 
Sbjct: 447 MYMKCGCVENALEVF--YAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNE 504

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITF+G+L AC + GLV +GR  F  M   +  E + +HY  MV+LLGRAG + EA EL+ 
Sbjct: 505 ITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELID 564

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MP  PD   WG LL AC+ H + E+ E    KLI ++P++ G +VLLSNIYA+ G W  
Sbjct: 565 SMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGN 624

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI-MEGR 717
           V ++R  +   G+ KTPGCS IE    VHEF A D++HPQ + I  +L ++  ++ +EG 
Sbjct: 625 VLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGY 684

Query: 718 RESSEELKF 726
             ++ E+  
Sbjct: 685 VPTTSEVSL 693



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDS 74
           F     +  RP  TA    S ++ C +   L   + IHA YI  + L  N+ILS+ LID 
Sbjct: 391 FQEMQLHGVRPDETAL--VSAISACTHLATLDLGKWIHA-YISRNKLQVNVILSTTLIDM 447

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G +  + +VF ++       +  ++  L+  G  E++L ++  M      P E T+
Sbjct: 448 YMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITF 507

Query: 135 PFVIRSC 141
             V+ +C
Sbjct: 508 MGVLGAC 514


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/660 (31%), Positives = 356/660 (53%), Gaps = 10/660 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + I   G   ++ + ++L+D+Y         ++VF+ +   N + + T++   ++
Sbjct: 113 RQLHCQCIKF-GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYAR 171

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               ++ L ++ +M  +   P   T+   +   +       G ++H  VVK G D    V
Sbjct: 172 NSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+  Y+KC G     + +  +        WNS+IS    NG   ++  +F  MR+  
Sbjct: 232 SNSLINLYLKC-GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNY 290

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 +  ++++    LK L     +HC  V   F  D ++ TAL+  YSK  ++ DA 
Sbjct: 291 VRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDAL 350

Query: 289 MLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            LF ++     VV W  MIS + Q+   +E+++L   M R G R + FT    ++++  +
Sbjct: 351 RLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVI 410

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
              E    +HA V++   +   +V  +L+D Y +   +  A K+F  +  K +V+WS+M+
Sbjct: 411 SPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-LEHVKYLHGYSMKLGL 466
            GY    ++  A+++F E+   G++ +  T  +IL  C    A +   K  HG+++K  L
Sbjct: 467 AGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL 526

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +S   V++A+   YAK G IE A E+F  ++   KD+++WNSMIS YA+HG   +   ++
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKRQR--EKDLVSWNSMISGYAQHGQAMKALDVF 584

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +MK+  V+ D +TF+G+  AC +AGLVEEG   F  M       P++EH + MV+L  R
Sbjct: 585 KEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSR 644

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG +++A +++++MP    + +W  +L+AC++H +TEL  L AEK+I+M+PE++  YVLL
Sbjct: 645 AGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLL 704

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SN+YA +G W   AK+R  + +R +KK PG SWIE+    + F A D+SHP  D IY  L
Sbjct: 705 SNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKL 764



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 215/416 (51%), Gaps = 7/416 (1%)

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++G+++++  LF  +   G E D     ++L+ +  L     GR +HC  +   F  D+S
Sbjct: 70  RDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVS 129

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V T+L+  Y K ++ +D + +FD+M +++ V W  +IS Y ++    E L L M M   G
Sbjct: 130 VGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG 189

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            + + FT  AA+  ++       G Q+H  V++NG D  + V NSLI++Y +C ++  AR
Sbjct: 190 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKAR 249

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +FD  + K+VV+W+SMI GY  +   LEAL +F  M+L  V +   +  +++  C N+ 
Sbjct: 250 ILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLK 309

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L   + LH   +K G     ++ TA+ ++Y+KC  +  A  LF E      ++++W +M
Sbjct: 310 ELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVG-NVVSWTAM 368

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           IS + ++    +   L+++MK+  VRP+  T+  +LTA       E    + K       
Sbjct: 369 ISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT-----N 423

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           YE S     ++++   + G ++EA ++   +  K D   W  +L+      ETE A
Sbjct: 424 YERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGETEAA 478



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 152/591 (25%), Positives = 282/591 (47%), Gaps = 38/591 (6%)

Query: 45  PQHLQQIHARY-IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
           P  L+    ++ I  +G+ Q  I     + S      L  +  +F+     +   Y ++L
Sbjct: 10  PPSLENFKPKFRIYANGVAQVRIYCFGTVSS----SRLYNAHNLFDKSPGRDRESYISLL 65

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
              S+ G  ++   ++  +    M      +  V++  + L D + G ++H Q +K GF 
Sbjct: 66  FGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFL 125

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
               VG +LV+ Y+K   G   + G  ++ F ++K R    W +LIS   +N  +++   
Sbjct: 126 DDVSVGTSLVDTYMK---GSNFKDG--RKVFDEMKERNVVTWTTLISGYARNSMNDEVLT 180

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  M+ EG + +S T    L    E      G  VH V V +   K + V+ +L+++Y 
Sbjct: 181 LFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYL 240

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K  ++  A++LFDK   K  V WN MIS Y  +G   E+L +   M  +  R    +  +
Sbjct: 241 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFAS 300

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TK 398
            +   + +K + + +Q+H +V++ G  +  ++  +L+  Y +C  +  A ++F  +    
Sbjct: 301 VIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVG 360

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VVSW++MI G++ +D   EA+ LFSEMK +GV  +  T   IL A   I   E    +H
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----VH 416

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              +K      S+V TA+  +Y K G +E A ++F    ID KDI+ W++M++ YA+ G+
Sbjct: 417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS--GIDDKDIVAWSAMLAGYAQTGE 474

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTAC--VNAGLVEEGRIIFKEMKESYGY------ 570
                K++ ++ +  ++P+  TF  +L  C   NA +         + K+ +G+      
Sbjct: 475 TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM--------GQGKQFHGFAIKSRL 526

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + S    ++++ +  + G+++ A E+ K    K D   W  ++S    H +
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMISGYAQHGQ 576


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 339/601 (56%), Gaps = 6/601 (0%)

Query: 114  KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
            ++LL++++M      P   T+PFV ++C+ L      E +H  ++K  F S   VG A V
Sbjct: 631  ESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATV 690

Query: 174  EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
            + ++KCD      K   +   +D  + WN+++S   Q+G ++K F LF+ MR++    DS
Sbjct: 691  DMFVKCDSLDYAAKVFERMPVRDATT-WNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDS 749

Query: 234  GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
             T++ L++S    KSL+L +++H   +        +V+   +S Y K   L+ AK++F+ 
Sbjct: 750  VTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEA 809

Query: 294  MSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
            +   DR V  WN +  A+   G   ++      M+R  F+ DL T I   +S    + + 
Sbjct: 810  IDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLT 869

Query: 352  WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
             G+ +H++ +  G+D  +   N+ I MY +  D   AR +FD + ++T VSW+ MI GY 
Sbjct: 870  QGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYA 929

Query: 412  THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                  EAL LF  M   GV  D VT+++++  C   G+LE  K++ G +   G    + 
Sbjct: 930  EKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNV 989

Query: 472  -VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
             V  A+   Y+KCG I+ A ++FD      K ++TW +MI+ YA +G + +  +L+++M 
Sbjct: 990  MVCNALIDMYSKCGSIDEARDIFD--NTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMI 1047

Query: 531  QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              D +P+ ITFL +L AC ++G +E+G   F  MK+ Y   P  +HY+ MV+LLGR G +
Sbjct: 1048 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 1107

Query: 591  DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            DEA EL+ +M  KPDA +WG LLSACK+H   ++AE  A+ L ++EP+ A  YV +SNIY
Sbjct: 1108 DEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAADSLFNLEPQMAAPYVEMSNIY 1167

Query: 651  AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
            AAAG W+G A++R+ ++   +KK PG S I++    H F   ++ H + +AIY+ L  L 
Sbjct: 1168 AAAGMWDGFARIRSMMKLWNIKKYPGESVIQVNGKNHTFTVGERGHMENEAIYSTLNGLS 1227

Query: 711  L 711
            L
Sbjct: 1228 L 1228



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 205/401 (51%), Gaps = 10/401 (2%)

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
            WN  +  AV      +S  LF+ M+  G E ++ T   + ++   L  +    +VH   +
Sbjct: 616  WNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLI 675

Query: 261  VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             S F  D+ V TA + M+ K  SL+ A  +F++M  +D   WN M+S + QSG   +   
Sbjct: 676  KSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFS 735

Query: 321  LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
            L   M       D  T +  + S S  K+++  K MHA  +R G D Q +V N+ I  Y 
Sbjct: 736  LFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYG 795

Query: 381  ECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
            +C DL+ A+ +F+++    +TVVSW+S+ K +    ++ +A   +  M  +  + D  T 
Sbjct: 796  KCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTF 855

Query: 439  INILPACVNIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFIS-YAKCGCIEMAGELFDEE 496
            IN+  +C N   L   + +H +++ LG +  + ++NT  FIS Y+K G    A  LFD  
Sbjct: 856  INLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINT--FISMYSKSGDSCSARLLFD-- 911

Query: 497  KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
             + S+  ++W  MIS YA+ GD  +   L+  M ++ V PDL+T L L++ C   G +E 
Sbjct: 912  IMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEI 971

Query: 557  GRIIFKEMKESYGYEPSQEHYA-SMVNLLGRAGHMDEAREL 596
            G+ I     + YG +        +++++  + G +DEAR++
Sbjct: 972  GKWI-DGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDI 1011



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 154/303 (50%), Gaps = 5/303 (1%)

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN  +        P ESL L   M R GF  + FT      + + +  I + + +H ++
Sbjct: 615 AWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHL 674

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           +++     V V  + +DM+ +C+ L+ A K+F+ +  +   +W++M+ G+     + +  
Sbjct: 675 IKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVF 734

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
            LF EM+L+ +  D VT++ ++ +     +L+ +K +H + ++LG++  ++V+     +Y
Sbjct: 735 SLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAY 794

Query: 481 AKCGCIEMAGELFDEEKIDSKD--IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            KCG ++ A  +F  E ID  D  +++WNS+  A+A  G+    F  Y  M + + +PDL
Sbjct: 795 GKCGDLDSAKLVF--EAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDL 852

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
            TF+ L  +C N   + +GR+I        G +   E   + +++  ++G    AR L  
Sbjct: 853 STFINLAASCQNPQTLTQGRLIHSHAIH-LGTDQDIEAINTFISMYSKSGDSCSARLLFD 911

Query: 599 DMP 601
            MP
Sbjct: 912 IMP 914



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 13/313 (4%)

Query: 48   LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL--YGTILKN 105
            L+ +HA  I L G+     +S+  I +Y   G L  ++ VF +I   +  +  + ++ K 
Sbjct: 768  LKVMHAFGIRL-GVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKA 826

Query: 106  LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
             + FGE       Y+ M      P   T+  +  SC        G  IH+  + LG D  
Sbjct: 827  FAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQD 886

Query: 166  DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             +  +  +  Y K       +    +  F  + SR    W  +IS   + G  +++  LF
Sbjct: 887  IEAINTFISMYSKS-----GDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALF 941

Query: 222  KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSK 280
              M   G   D  TL++L+    +  SLE+G+ +   A +    KD + V  AL+ MYSK
Sbjct: 942  HAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSK 1001

Query: 281  LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              S+++A+ +FD  S+K  V W  MI+ Y  +G   E++EL   M+   ++ +  T +A 
Sbjct: 1002 CGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAV 1061

Query: 341  VSSISTMKNIEWG 353
            + + +   ++E G
Sbjct: 1062 LQACAHSGSLEKG 1074



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
           +V +W+  ++  V  +  +E+L LF EMK  G E +  T   +  AC  +  + + + +H
Sbjct: 612 SVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVH 671

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            + +K    S   V TA    + KC  ++ A ++F  E++  +D  TWN+M+S + + G 
Sbjct: 672 THLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVF--ERMPVRDATTWNAMLSGFCQSGH 729

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
             + F L+ +M+  ++ PD +T + L+ + 
Sbjct: 730 TDKVFSLFREMRLDEIPPDSVTVMTLIQSA 759


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 221/670 (32%), Positives = 348/670 (51%), Gaps = 18/670 (2%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C  P HL + HA+ +I +G   +L   + L     ++G    ++ +F S+  P+  L+  
Sbjct: 19  CTFP-HLAETHAQ-LIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNV 76

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           ++K  S F     ++  Y  +   + + P   TY F I +     D   G  +HA  V  
Sbjct: 77  LIKGFS-FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASP---DDNLGMCLHAHAVVD 132

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
           GFDS   V  ALV+ Y K      +     ++ F  +  R    WN++I+  V+N   + 
Sbjct: 133 GFDSNLFVASALVDLYCKF-----SRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDD 187

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           S ++FK M  +G   DS T+  +L +  E++ +++G  + C+A+   F  D  V T L+S
Sbjct: 188 SVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLIS 247

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           ++SK   ++ A++LF  +   D V +N +IS +  +G  + +++    ++ SG R    T
Sbjct: 248 VFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSST 307

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            +  +   S   ++     +    +++G+  Q SV  +L  +Y    +++ AR++FD   
Sbjct: 308 MVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS 367

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            KTV +W++MI GY     +  A+ LF EM       + VTI +IL AC  +GAL   K 
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKS 427

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +H       L     V+TA+   YAKCG I  A +LFD      K+ +TWN+MI  Y  H
Sbjct: 428 VHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFD--LTSEKNTVTWNTMIFGYGLH 485

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +  KL+ +M     +P  +TFL +L AC +AGLV EG  IF  M   Y  EP  EH
Sbjct: 486 GYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEH 545

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA MV++LGRAG +++A E ++ MP +P   VWG LL AC +H +T LA + +E+L  ++
Sbjct: 546 YACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELD 605

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
           P N G YVLLSNIY+    +   A +R  ++ R L KTPGC+ IE+    H F   D+SH
Sbjct: 606 PGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSH 665

Query: 697 PQADAIYTIL 706
            Q  +IY  L
Sbjct: 666 SQTTSIYAKL 675


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/547 (36%), Positives = 312/547 (57%), Gaps = 41/547 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS++S   Q+ + E+S E F  M  E    +  +  + L +   L  L +G  VH +  
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S +  D+ + +AL+ MYSK  S+  A+ +F  M +++ V WN +I+ Y Q+G   E+LE
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMY 379
           + + M+ SG   D  T  + VS+ +++  ++ G Q+HA V++ N     + + N+L+DMY
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY 294

Query: 380 CECEDLNCARKIFD---------------------SVKT----------KTVVSWSSMIK 408
            +C  +N AR++FD                     SVK           + VVSW+++I 
Sbjct: 295 AKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY  + ++ EALRLF  +K E +     T  N+L AC N+  L   +  H + +K G   
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF 414

Query: 469 LSSVNTAIFIS------YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            S   + IF+       Y KCG IE    +F  EK+  +D ++WN++I  YA++G  ++ 
Sbjct: 415 QSGAESDIFVGNSLIDMYMKCGSIEDGSRVF--EKMKERDCVSWNAIIVGYAQNGYGAEA 472

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +++ +M     +PD +T +G+L AC +AGLVEEGR  F  M+E +G  P ++HY  MV+
Sbjct: 473 LQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVD 531

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG ++EA+ L++ MP  PDA VWG LL+ACK+H   E+ +  AEKL+ ++P N+G 
Sbjct: 532 LLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGP 591

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           YVLLSN+YA  G+W  V ++R  +R +G+ K PGCSWIE+   VH F   D+SHP    I
Sbjct: 592 YVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQI 651

Query: 703 YTILGIL 709
           Y++L +L
Sbjct: 652 YSVLKML 658



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 134/507 (26%), Positives = 247/507 (48%), Gaps = 46/507 (9%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +      +N    ++LI      G L  + ++F S+  P+   + +++   ++   +
Sbjct: 69  ARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRF 128

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           E++L  + +M  +     E ++   + +C+ L+D   G ++HA V K  + +   +G AL
Sbjct: 129 EESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSAL 188

Query: 173 VEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           ++ Y KC      E+   GMI+R        WNSLI+   QNG + ++ E+F  M   G 
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNL----VTWNSLITCYEQNGPASEALEVFVRMMDSGL 244

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSKL------- 281
           E D  TL +++ +   L +L+ G  +H   V ++ F  DL +  AL+ MY+K        
Sbjct: 245 EPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEAR 304

Query: 282 ------------------------ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
                                   AS++ A+ +F KM+ ++ V WN +I+ Y Q+G  +E
Sbjct: 305 RVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEE 364

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ------VSV 371
           +L L   + R       +T    +S+ + + ++  G+Q H +VL+ G ++Q      + V
Sbjct: 365 ALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFV 424

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            NSLIDMY +C  +    ++F+ +K +  VSW+++I GY  +    EAL++F +M + G 
Sbjct: 425 GNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGE 484

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D VT+I +L AC + G +E  ++      + GL  L    T +     + GC+  A  
Sbjct: 485 KPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKN 544

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGD 518
           L +   ++  D + W S+++A   HG+
Sbjct: 545 LIEAMPVNP-DAVVWGSLLAACKVHGN 570



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 207/448 (46%), Gaps = 67/448 (14%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           +S     LL S +  +S    R+VH   +++ F  ++ +   L+ +Y K   L+DA+ LF
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 292 DKMSDKDRVVWNIMISAYYQSGF-------------P------------------KESLE 320
           D+M  ++   WN +IS   +SGF             P                  +ESLE
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
             + M R  F  + ++  +A+S+ + + ++  G Q+HA V ++     V + ++LIDMY 
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  + CA ++F  +  + +V+W+S+I  Y  +  + EAL +F  M   G+E D VT+ +
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLAS 253

Query: 441 ILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE---- 495
           ++ AC ++ AL+    +H   +K         +  A+   YAKC  +  A  +FD     
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313

Query: 496 -------------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
                                     K+  +++++WN++I+ Y ++G+  +  +L+  +K
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEH----YASMVNLLG 585
           +  + P   TF  LL+AC N   +  GR      +K+ + ++   E       S++++  
Sbjct: 374 RESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYM 433

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLL 613
           + G +++   + + M  + D   W  ++
Sbjct: 434 KCGSIEDGSRVFEKMKER-DCVSWNAII 460


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/593 (35%), Positives = 338/593 (56%), Gaps = 14/593 (2%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           S N+  +  IL+ L K GE    L + K +    +      Y  ++++C+ +L F  G +
Sbjct: 81  SDNTNPFSKILQ-LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQ 139

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAV 209
           IHA V+K G  FD F  VG++L+  Y K    F   + +    F KD+ S W S+IS  V
Sbjct: 140 IHAHVIKSGLEFDRF--VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVIS-WTSMISGYV 196

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + GK   S ELF  M   G E ++ TL  ++++  EL  L+LGRI H V +   F  +  
Sbjct: 197 RVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYV 256

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS- 328
           + +AL+ M+ +  +L+DA+ LFD++ + D + W  +ISA  ++ F  E+L     M R  
Sbjct: 257 IASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDH 316

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   D FT    +++   +  ++ GK++HA V+  G    V V +SL+DMY +C  +  +
Sbjct: 317 GMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGES 376

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           ++IFD +  K  VSWS+++ GY  +      +++F +M+    +VD      IL  C  +
Sbjct: 377 QRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGL 432

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            A+   K +H   ++ G      V +A+   YAKCGCIE A  +FD+  +  +++ITWNS
Sbjct: 433 AAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV--RNLITWNS 490

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI  +A++G   +  +++ QM +  ++PD I+F+G+L AC + GLV+EGR  F  M + Y
Sbjct: 491 MIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDY 550

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G +   EHY+ MV+LLGRAG ++EA  L++   F+ D+ +W  LL AC   +  E+AE  
Sbjct: 551 GIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERI 610

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           A++++ +EP+   +YVLL+N+Y A G+WN   ++R  ++DRG+ K PG SWIE
Sbjct: 611 AKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 663



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 241/486 (49%), Gaps = 21/486 (4%)

Query: 37  SLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL-LSLSQQVFNSIT 92
           SLL  C       H  QIHA ++I  GL  +  + ++L+  Y  LG     +++VF+ + 
Sbjct: 123 SLLQTCTKVLAFNHGLQIHA-HVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLF 181

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + + + +++    + G+   +L ++ +M    + P   T   VI++CS L D   G  
Sbjct: 182 VKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRI 241

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
            H  V+  GFDS   +  AL++ + + +   ++ + +     +     W S+IS   +N 
Sbjct: 242 FHGVVLGRGFDSNYVIASALIDMHGR-NCALDDARQLFDELLEPDAICWTSIISALTRND 300

Query: 213 KSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
             +++   F  + R  G   D  T   +L +   L  L+ G+ VH   + + FC ++ V 
Sbjct: 301 FFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVE 360

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           ++L+ MY K  S+ +++ +FD+M  K+ V W+ ++  Y Q+G  K  +++     R   +
Sbjct: 361 SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF----RKMEK 416

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            DL+     + + + +  +  GK++H   +R G    V V ++L+D+Y +C  +  A+ I
Sbjct: 417 VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTI 476

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  + +++W+SMI G+  + +  EALR+F++M  EG++ D+++ I IL AC + G +
Sbjct: 477 FDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLV 536

Query: 452 EH-----VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           +      +     Y +K+G+   S +   +     + G +E A E+  E      D   W
Sbjct: 537 DEGREYFISMTKDYGIKVGIEHYSCMVDLL----GRAGLLEEA-EILIETSDFRDDSSLW 591

Query: 507 NSMISA 512
            +++ A
Sbjct: 592 AALLGA 597



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 150/300 (50%), Gaps = 18/300 (6%)

Query: 19  LRFPANQTRPHMTATHSFS---LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLI 72
           LRF  +  R H      F+   +L  C N   L+Q   +HA+ +I  G   N+++ S+L+
Sbjct: 306 LRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAK-VITTGFCGNVVVESSLV 364

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           D Y   G +  SQ++F+ +   NS+ +  +L    + G+++  + ++++M    +Y    
Sbjct: 365 DMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLY---- 420

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-Q 191
            +  ++R+C+ L     G+++H Q ++ G      V  ALV+ Y KC G  E  + +  Q
Sbjct: 421 CFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC-GCIEYAQTIFDQ 479

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
              ++L + WNS+I    QNG+ E++  +F  M  EG + D  + I +L +      ++ 
Sbjct: 480 MPVRNLIT-WNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDE 538

Query: 252 GRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
           GR  + +++  D+   + +   + ++ +  +   LE+A++L +    + D  +W  ++ A
Sbjct: 539 GR-EYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGA 597


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 378/694 (54%), Gaps = 41/694 (5%)

Query: 49   QQIHAR-YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
            +QIHA  +   H    ++ ++++L++ Y   G L+ ++QVF+ I   + + + +++  L 
Sbjct: 350  KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVKLGFDSFD 166
            +F E+E +L +++ M  +++ P   T   V  +CS +   +  G+++HA  ++ G D   
Sbjct: 410  RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRT 468

Query: 167  DVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
               +ALV  Y +   G  N+   +   F  KDL S WN++IS   QN + E++     LM
Sbjct: 469  YTNNALVTMYARL--GRVNDAKALFGVFDGKDLVS-WNTVISSLSQNDRFEEALMYVYLM 525

Query: 225  RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLAS 283
             ++G   D  TL ++L +  +L+ L +GR +HC A+ + D  ++  V TAL+ MY     
Sbjct: 526  IVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQ 585

Query: 284  LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVS 342
             +  +++FD +  +   VWN +++ Y ++ F  ++L L + M+  S F  +  T  + + 
Sbjct: 586  PKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLP 645

Query: 343  SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
            +    K     + +H  +++ G      V N+L+DMY     +  ++ IF  +  + +VS
Sbjct: 646  ACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVS 705

Query: 403  WSSMIKGYVTHDQSLEALRLFSEMKLEGVE------VDF------------VTIINILPA 444
            W++MI G +   +  +AL L  EM+    E      VD+            VT++ +LP 
Sbjct: 706  WNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPG 765

Query: 445  CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
            C  + AL   K +H Y++K  L    +V +A+   YAKCGC+ +A  +FD+  I  +++I
Sbjct: 766  CAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPI--RNVI 823

Query: 505  TWNSMISAYAKHGDWSQCFKLYTQMKQSD------VRPDLITFLGLLTACVNAGLVEEGR 558
            TWN +I AY  HG   +  +L+  M          +RP+ +T++ +  AC ++G+V+EG 
Sbjct: 824  TWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGL 883

Query: 559  IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF---KPDARVWGPLLSA 615
             +F  MK S+G EP  +HYA +V+LLGR+G + EA EL+  MP    K DA  W  LL A
Sbjct: 884  HLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDA--WSSLLGA 941

Query: 616  CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
            C++H   E  E+ A+ L  +EP  A +YVL+SNIY++AG W+    +R  +++ G++K P
Sbjct: 942  CRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEP 1001

Query: 676  GCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            GCSWIE G  VH+F + D SHPQ+  ++  L  L
Sbjct: 1002 GCSWIEHGDEVHKFLSGDASHPQSKELHEYLETL 1035



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 145/526 (27%), Positives = 258/526 (49%), Gaps = 49/526 (9%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMI 190
            +P V+++ + + D   G++IHA V K G    S   V ++LV  Y KC      +    
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKC-----GDLTAA 386

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           ++ F D+  R    WNS+I+   +  + E S  LF+LM  E  +  S TL+++  +   +
Sbjct: 387 RQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHV 446

Query: 247 K-SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +  + LG+ VH   + +   +  + N AL++MY++L  + DAK LF     KD V WN +
Sbjct: 447 RGGVRLGKQVHAYTLRNGDLRTYT-NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTV 505

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           IS+  Q+   +E+L  +  M+  G R D  T  + + + S ++ +  G+++H   LRNG 
Sbjct: 506 ISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGD 565

Query: 366 DYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
             + S V  +L+DMYC C+     R +FD V  +TV  W++++ GY  ++   +ALRLF 
Sbjct: 566 LIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFV 625

Query: 425 EMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           EM  E     +  T  ++LPACV        + +HGY +K G      V  A+   Y++ 
Sbjct: 626 EMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRM 685

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ------SDV--- 534
           G +E++  +F   +++ +DI++WN+MI+     G +     L  +M++      SD    
Sbjct: 686 GRVEISKTIFG--RMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVD 743

Query: 535 ---------RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY------AS 579
                    +P+ +T + +L  C     + +G       KE + Y   Q+        ++
Sbjct: 744 YEDDGGVPFKPNSVTLMTVLPGCAALAALGKG-------KEIHAYAVKQKLAMDVAVGSA 796

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +V++  + G ++ A  +   MP + +   W  L+ A  MH + E A
Sbjct: 797 LVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGEEA 841



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCARK 390
           D F   A + + + + ++  GKQ+HA+V + G      V+V NSL++MY +C DL  AR+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI-G 449
           +FD +  +  VSW+SMI      ++   +L LF  M  E V+    T++++  AC ++ G
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            +   K +H Y+++ G +  +  N A+   YA+ G +  A  LF     D KD+++WN++
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFG--VFDGKDLVSWNTV 505

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           IS+ +++  + +       M    VRPD +T   +L AC     +  GR I
Sbjct: 506 ISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 12/236 (5%)

Query: 395 VKTKTVVSWSSMIKGYVTHDQSL-EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           V+ ++   W  +++   TH  S  +A+  ++ M       D      +L A   +  L  
Sbjct: 290 VERRSPSQWIDLLRSQ-THSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCL 348

Query: 454 VKYLHGYSMKLGLNSLSSVNTA--IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
            K +H +  K G    SSV  A  +   Y KCG +  A ++FD+  I  +D ++WNSMI+
Sbjct: 349 GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDD--IPDRDHVSWNSMIA 406

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
              +  +W     L+  M   +V P   T + +  AC +   V  G  + K++       
Sbjct: 407 TLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSH---VRGGVRLGKQVHAYTLRN 463

Query: 572 PSQEHYA--SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                Y   ++V +  R G +++A+ L      K D   W  ++S+   +   E A
Sbjct: 464 GDLRTYTNNALVTMYARLGRVNDAKALFGVFDGK-DLVSWNTVISSLSQNDRFEEA 518


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/679 (33%), Positives = 377/679 (55%), Gaps = 18/679 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL  C   + ++   ++H+  + L G H    + + L+  YA    LS ++++F+    
Sbjct: 150 ALLKACAKLRDIRSGSELHSLLVKL-GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 208

Query: 94  P-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--- 149
             +++L+ +IL + S  G+  +TL ++++M +    PA ++Y  V    +C  D  S   
Sbjct: 209 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTG--PAPNSYTIVSALTAC--DGFSYAK 264

Query: 150 -GEKIHAQVVKLGFDSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            G++IHA V+K    S +  V +AL+  Y +C    + E+ + Q    D+ + WNSLI  
Sbjct: 265 LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT-WNSLIKG 323

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            VQN   +++ E F  M   G + D  ++ +++ ++  L +L  G  +H   +   +  +
Sbjct: 324 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSN 383

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           L V   L+ MYSK          F +M DKD + W  +I+ Y Q+    E+LEL   + +
Sbjct: 384 LQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK 443

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D     + + + S +K++   K++H ++LR G      + N L+D+Y +C ++  
Sbjct: 444 KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGY 502

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A ++F+S+K K VVSW+SMI     +    EA+ LF  M   G+  D V ++ IL A  +
Sbjct: 503 ATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAAS 562

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL   + +H Y ++ G     S+  A+   YA CG ++ A  +FD  +I+ K ++ + 
Sbjct: 563 LSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFD--RIERKGLLQYT 620

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           SMI+AY  HG      +L+ +M+  +V PD I+FL LL AC +AGL++EGR   K M+  
Sbjct: 621 SMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHE 680

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           Y  EP  EHY  +V++LGRA  + EA E VK M  +P A VW  LL+AC+ HSE E+ E+
Sbjct: 681 YELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEI 740

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A++L+ +EP+N GN VL+SN++A  G+WN V K+R  ++  G++K PGCSWIE+   VH
Sbjct: 741 AAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 800

Query: 688 EFWAADQSHPQADAIYTIL 706
           +F A D+SHP++  IY  L
Sbjct: 801 KFTARDKSHPESKEIYEKL 819



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 263/483 (54%), Gaps = 16/483 (3%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +    +  + T++      GE    L +Y  M ++ +     ++P ++++C+ L
Sbjct: 99  EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 158

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D  SG ++H+ +VKLG+ S   + +ALV  Y K D     +    +R F   + +    
Sbjct: 159 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKND-----DLSAARRLFDGFQEKGDAV 213

Query: 201 -WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-V 258
            WNS++S    +GKS ++ ELF+ M M G   +S T+++ L +       +LG+ +H  V
Sbjct: 214 LWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASV 273

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
              S    +L V  AL++MY++   +  A+ +  +M++ D V WN +I  Y Q+   KE+
Sbjct: 274 LKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEA 333

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           LE    M+ +G ++D  +  + +++   + N+  G ++HA V+++G D  + V N+LIDM
Sbjct: 334 LEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDM 393

Query: 379 YCECEDLNC-ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           Y +C +L C   + F  +  K ++SW+++I GY  +D  +EAL LF ++  + +E+D + 
Sbjct: 394 YSKC-NLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMI 452

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + +IL A   + ++  VK +H + ++ GL      N  + + Y KC  +  A  +F  E 
Sbjct: 453 LGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDV-YGKCRNMGYATRVF--ES 509

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           I  KD+++W SMIS+ A +G+ S+  +L+ +M ++ +  D +  L +L+A  +   + +G
Sbjct: 510 IKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKG 569

Query: 558 RII 560
           R I
Sbjct: 570 REI 572



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 197/380 (51%), Gaps = 12/380 (3%)

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           ++ F ++  R    WN++I   V NG+   +  L+  MR+EG      +   LL++  +L
Sbjct: 99  EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 158

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIM 305
           + +  G  +H + V   +     +  AL+SMY+K   L  A+ LFD   +K D V+WN +
Sbjct: 159 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 218

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           +S+Y  SG   E+LEL   M  +G   + +T ++A+++       + GK++HA+VL++ +
Sbjct: 219 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 278

Query: 366 -DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              ++ V N+LI MY  C  +  A +I   +    VV+W+S+IKGYV +    EAL  FS
Sbjct: 279 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 338

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +M   G + D V++ +I+ A   +  L     LH Y +K G +S   V   +   Y+KC 
Sbjct: 339 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 398

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
                G  F   ++  KD+I+W ++I+ YA++    +  +L+  + +  +  D +    +
Sbjct: 399 LTCYMGRAF--LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEM----I 452

Query: 545 LTACVNAGLVEEGRIIFKEM 564
           L + + A  V +  +I KE+
Sbjct: 453 LGSILRASSVLKSMLIVKEI 472


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/702 (29%), Positives = 358/702 (50%), Gaps = 65/702 (9%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+I  + +++ YA LG LS ++++F  +   +   + T++    + G +   +  +  M 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 124 LQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG- 181
                 P   T+   ++SC  L       ++   + K GF    DV   +V+ +++C   
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 182 -----------------------GFENEKGMIQ--RKFKDLKSR----WNSLISLAVQNG 212
                                  G+    G+      F+ +  R    WN ++S   Q+G
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           ++ ++  +   M   G   DS T  + L +  +L SL  G+ +H   + S  C D  V +
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVAS 333

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           A++ +Y+K    ++A+ +F  + D++ V W ++I  + Q G   ESLEL   M       
Sbjct: 334 AMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTV 393

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA---- 388
           D F     +S  S   ++   +Q+H+  L++G    V + NSLI MY +C +L  A    
Sbjct: 394 DQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIF 453

Query: 389 ---------------------------RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
                                      R+ FD + T+ V++W++M+  Y+ H    + L+
Sbjct: 454 SSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLK 513

Query: 422 LFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           ++S M  E  V  D+VT + +   C ++GA +    + G+++K+GL   +SV  A+   Y
Sbjct: 514 MYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMY 573

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           +KCG I  A ++FD   +  KD+++WN+MI+ Y++HG   Q  +++  M +   +PD I+
Sbjct: 574 SKCGRISEARKIFD--FLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYIS 631

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           ++ +L++C ++GLV+EG+  F  +K  +   P  EH++ MV+LL RAG++ EA+ L+ +M
Sbjct: 632 YVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEM 691

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660
           P KP A VWG LLSACK H   ELAEL A+ L  ++  ++G Y+LL+ IYA AGK    A
Sbjct: 692 PMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSA 751

Query: 661 KMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           ++R  +RD+G+KK PG SW+E+   VH F A D SHPQ  AI
Sbjct: 752 QVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAI 793



 Score = 40.0 bits (92), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 32/188 (17%)

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA------- 489
            + + L +C   GAL   + LHG  + +GL S   +   +  +Y  CG +  A       
Sbjct: 30  ALADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGD 89

Query: 490 -------------------GELFDEE----KIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                              G L D E    ++  +D+ +WN+++S Y + G +    + +
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESF 149

Query: 527 TQMKQS-DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
             M++S D  P+  TF   + +C   G  E    +   + + +G++   +    +V++  
Sbjct: 150 VSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTK-FGFQGDPDVATGIVDMFV 208

Query: 586 RAGHMDEA 593
           R G +D A
Sbjct: 209 RCGAVDFA 216


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 362/667 (54%), Gaps = 19/667 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA   + HGL  N+ + S+LI+ YA  G +  +  VF+     N +++  +L  L +
Sbjct: 220 RQVHAA-AVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVR 278

Query: 109 FGEYE----KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
             EY+    +  L  K++ L++    E TY  V+ +C+ L     G ++    +K   D+
Sbjct: 279 -NEYQVEAIQMFLYMKRLGLEA---DEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDA 334

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
              V +A ++ + K  G  ++ K +     +KD  S WN+L+     N + E++  + K 
Sbjct: 335 SLFVANATLDMHSKF-GAIDDAKTLFNLITYKDTVS-WNALLVGLTHNEEDEEAIHMLKG 392

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M ++G   D  +   ++ +   +++ E G+ +HC+A+    C + +V ++L+  YSK   
Sbjct: 393 MNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGD 452

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E  + +  ++     V  N++I+   Q+    E+++L   ++R G +   FT  + +S 
Sbjct: 453 VESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSG 512

Query: 344 ISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCEC---EDLNCARKIFDSVKTKT 399
            + + +   GKQ+H   L++G  +   SV  SL+  Y +    ED N  + + +    K 
Sbjct: 513 CTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDAN--KLLIEMPDHKN 570

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           +V W++++ GY  +  S ++L  F  M+   V  D VT  +IL AC  + AL   K +HG
Sbjct: 571 LVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHG 630

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             +K G  S  +  +AI   Y+KCG I  + E F E K   +DI  WNSMI  +AK+G  
Sbjct: 631 LIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELK-SKQDITLWNSMILGFAKNGYA 689

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +   L+ +M+ S ++ D +TFLG+L AC +AGL+ EGR  F  M + YG  P  +HYA 
Sbjct: 690 DEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYAC 749

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
            ++LLGR GH+ EA+E++ ++PF+PD  +W   L+AC+MH + E  E+ A++L+ +EP+N
Sbjct: 750 FIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQN 809

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
           +  YVLLSN+YAAAG W      R  +R++G  K PGCSWI +G     F   D++H  A
Sbjct: 810 SSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGNKTSLFLVQDKNHLGA 869

Query: 700 DAIYTIL 706
             IY +L
Sbjct: 870 LRIYEML 876



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 273/539 (50%), Gaps = 6/539 (1%)

Query: 78  LGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLL-VYKQMALQSMYPAEDTYP 135
           LG L  ++ + + + +P+S + +  ++   ++    E  +  +YK M    ++P   T+ 
Sbjct: 145 LGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFA 204

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
            ++ + +    FI G ++HA  V+ G D+   VG +L+  Y KC G   +   +     +
Sbjct: 205 SMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKC-GCIGDAILVFDCSGE 263

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN++++  V+N    ++ ++F  M+  G E D  T +++L +   L S  LGR V
Sbjct: 264 KNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQV 323

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
            CV + +     L V  A L M+SK  +++DAK LF+ ++ KD V WN ++     +   
Sbjct: 324 QCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEED 383

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E++ +L  M   G   D  +    +++ S ++  E GKQ+H   +++      +V +SL
Sbjct: 384 EEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSL 443

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           ID Y +  D+   RK+   V   ++V  + +I G V +++  EA+ LF ++  +G++   
Sbjct: 444 IDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSS 503

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            T  +IL  C  + +    K +H Y++K G LN  +SV  ++  +Y K    E A +L  
Sbjct: 504 FTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLI 563

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
           E   D K+++ W +++S YA++G   Q    + +M+  DV PD +TF  +L AC     +
Sbjct: 564 EMP-DHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTAL 622

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
            +G+ I   + +S G+   +   ++++++  + G +  + E  K++  K D  +W  ++
Sbjct: 623 SDGKEIHGLIIKS-GFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMI 680



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/560 (22%), Positives = 265/560 (47%), Gaps = 44/560 (7%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL      ++ L++ YA  G +  +++VF  I+ P+++ + +++    + G +++ + ++
Sbjct: 61  GLGSGAFCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLF 120

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M      P   T   V+ + + L                                   
Sbjct: 121 TRMEKMGSSPDRVTCVAVVCALTAL----------------------------------- 145

Query: 180 DGGFENEKGMIQRKFKDLKS-RWNSLIS-LAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
            G  E+ + ++ R      +  WN++IS  A Q+G   + F L+K MR  G      T  
Sbjct: 146 -GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFA 204

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           ++L +     +   GR VH  AV      ++ V ++L+++Y+K   + DA ++FD   +K
Sbjct: 205 SMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEK 264

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           + V+WN M++   ++ +  E++++ + M R G  AD FT ++ + + + + +   G+Q+ 
Sbjct: 265 NVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQ 324

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              ++N  D  + V N+ +DM+ +   ++ A+ +F+ +  K  VSW++++ G   +++  
Sbjct: 325 CVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDE 384

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EA+ +   M L+GV  D V+   ++ AC NI A E  K +H  +MK  + S  +V +++ 
Sbjct: 385 EAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLI 444

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y+K G +E   ++    ++D+  I+  N +I+   ++    +   L+ Q+ +  ++P 
Sbjct: 445 DFYSKHGDVESCRKVL--AQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPS 502

Query: 538 LITFLGLLTACVNAGLVEE--GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
             TF  +L+ C   GL+    G+ +     +S           S+V    +A   ++A +
Sbjct: 503 SFTFSSILSGCT--GLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANK 560

Query: 596 LVKDMPFKPDARVWGPLLSA 615
           L+ +MP   +   W  ++S 
Sbjct: 561 LLIEMPDHKNLVEWTAIVSG 580



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 173/403 (42%), Gaps = 47/403 (11%)

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   D   L   L +   L +L  G+  HC A             AL++MY++   + DA
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +F  +S  D V W  MIS Y+++G  +E++ L   M + G   D  T +A V +++ +
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +E              D +  +H                          + V+W+++I
Sbjct: 146 GRLE--------------DARTLLHR--------------------MPAPSSTVAWNAVI 171

Query: 408 KGYVTHDQ-SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
            GY        E   L+ +M+  G+     T  ++L A  N  A    + +H  +++ GL
Sbjct: 172 SGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGL 231

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           ++   V +++   YAKCGCI  A  +FD      K+++ WN+M++   ++    +  +++
Sbjct: 232 DANVFVGSSLINLYAKCGCIGDAILVFDCS--GEKNVVMWNAMLNGLVRNEYQVEAIQMF 289

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQEHYASMVN 582
             MK+  +  D  T++ +L AC +      GR    +  K   ++  +  +     + ++
Sbjct: 290 LYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVAN-----ATLD 344

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +  + G +D+A+ L   + +K D   W  LL     + E E A
Sbjct: 345 MHSKFGAIDDAKTLFNLITYK-DTVSWNALLVGLTHNEEDEEA 386



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 39/293 (13%)

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           C    G R D F   A +S+ S +  +  GKQ H +  + G         +L++MY  C 
Sbjct: 21  CSAGGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCG 80

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  AR++F  +     V W+SMI GY    +  EA+ LF+ M+  G   D VT + ++ 
Sbjct: 81  RVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVC 140

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           A   +G LE  + L        L+ + + ++                             
Sbjct: 141 ALTALGRLEDARTL--------LHRMPAPSST---------------------------- 164

Query: 504 ITWNSMISAYAKH-GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           + WN++IS YA+  G   + F LY  M+   + P   TF  +L+A  NA    EGR +  
Sbjct: 165 VAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHA 224

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
                +G + +    +S++NL  + G + +A  LV D   + +  +W  +L+ 
Sbjct: 225 AAVR-HGLDANVFVGSSLINLYAKCGCIGDAI-LVFDCSGEKNVVMWNAMLNG 275


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 214/643 (33%), Positives = 353/643 (54%), Gaps = 9/643 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           +A+  L+  + Q+F+ +   ++ L+  ++K  +  G Y + +  Y +M    +     TY
Sbjct: 74  FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTY 133

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           PFVI+S + +     G+KIHA V+KLGF S   V ++L+  Y+K    ++ EK   +   
Sbjct: 134 PFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +D+ S WNS+IS  +  G    S  LFK M   G + D  + ++ L +   + S ++G+ 
Sbjct: 194 RDIVS-WNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKE 252

Query: 255 VHCVAVVSDF-CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           +HC AV S     D+ V T++L MYSK   +  A+ +F+ M  ++ V WN+MI  Y ++G
Sbjct: 253 IHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNG 312

Query: 314 FPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
              ++      M  ++G + D+ T+I  + + + ++    G+ +H   +R G    + + 
Sbjct: 313 RVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLE 368

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
            +LIDMY EC  L  A  IFD +  K V+SW+S+I  YV + ++  AL LF E+    + 
Sbjct: 369 TALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLV 428

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D  TI +ILPA     +L   + +H Y +K    S + +  ++   YA CG +E A + 
Sbjct: 429 PDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKC 488

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F+   I  KD+++WNS+I AYA HG       L+++M  S V P+  TF  LL AC  +G
Sbjct: 489 FNH--ILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISG 546

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           +V+EG   F+ MK  YG +P  EHY  M++L+GR G+   A+  +++MPF P AR+WG L
Sbjct: 547 MVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSL 606

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L+A + H +  +AE  AE++  ME +N G YVLL N+YA AG+W  V +++  +  +G+ 
Sbjct: 607 LNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGIS 666

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +T   S +E     H F   D+SH   + IY +L ++   + E
Sbjct: 667 RTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGE 709



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 227/476 (47%), Gaps = 16/476 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IHA  I L G   ++ + ++LI  Y  LG    +++VF  +   + + + +++     
Sbjct: 150 KKIHAMVIKL-GFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD- 167
            G+   +L+++K+M      P   +    + +CS +     G++IH   V+   ++ D  
Sbjct: 209 LGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVM 268

Query: 168 VGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KL 223
           V  ++++ Y K       E+   GMIQR        WN +I    +NG+   +F  F K+
Sbjct: 269 VMTSILDMYSKYGEVSYAERIFNGMIQRNI----VAWNVMIGCYARNGRVTDAFLCFQKM 324

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
               G + D  T INLL ++  L+    GR +H  A+   F   + + TAL+ MY +   
Sbjct: 325 SEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMYGECGQ 380

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L+ A+++FD+M++K+ + WN +I+AY Q+G    +LEL   +  S    D  T  + + +
Sbjct: 381 LKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPA 440

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +   ++  G+++HA ++++       + NSL+ MY  C DL  ARK F+ +  K VVSW
Sbjct: 441 YAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSW 500

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSM 462
           +S+I  Y  H     ++ LFSEM    V  +  T  ++L AC   G + E  +Y      
Sbjct: 501 NSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKR 560

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           + G++        +     + G    A    +E        I W S+++A   H D
Sbjct: 561 EYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARI-WGSLLNASRNHKD 615


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/679 (33%), Positives = 377/679 (55%), Gaps = 18/679 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL  C   + ++   ++H+  + L G H    + + L+  YA    LS ++++F+    
Sbjct: 187 ALLKACAKLRDIRSGSELHSLLVKL-GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 245

Query: 94  P-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--- 149
             +++L+ +IL + S  G+  +TL ++++M +    PA ++Y  V    +C  D  S   
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTG--PAPNSYTIVSALTAC--DGFSYAK 301

Query: 150 -GEKIHAQVVKLGFDSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            G++IHA V+K    S +  V +AL+  Y +C    + E+ + Q    D+ + WNSLI  
Sbjct: 302 LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVT-WNSLIKG 360

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            VQN   +++ E F  M   G + D  ++ +++ ++  L +L  G  +H   +   +  +
Sbjct: 361 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSN 420

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           L V   L+ MYSK          F +M DKD + W  +I+ Y Q+    E+LEL   + +
Sbjct: 421 LQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK 480

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D     + + + S +K++   K++H ++LR G      + N L+D+Y +C ++  
Sbjct: 481 KRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGY 539

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A ++F+S+K K VVSW+SMI     +    EA+ LF  M   G+  D V ++ IL A  +
Sbjct: 540 ATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAAS 599

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL   + +H Y ++ G     S+  A+   YA CG ++ A  +FD  +I+ K ++ + 
Sbjct: 600 LSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFD--RIERKGLLQYT 657

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           SMI+AY  HG      +L+ +M+  +V PD I+FL LL AC +AGL++EGR   K M+  
Sbjct: 658 SMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHE 717

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           Y  EP  EHY  +V++LGRA  + EA E VK M  +P A VW  LL+AC+ HSE E+ E+
Sbjct: 718 YELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEI 777

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A++L+ +EP+N GN VL+SN++A  G+WN V K+R  ++  G++K PGCSWIE+   VH
Sbjct: 778 AAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 837

Query: 688 EFWAADQSHPQADAIYTIL 706
           +F A D+SHP++  IY  L
Sbjct: 838 KFTARDKSHPESKEIYEKL 856



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 284/533 (53%), Gaps = 19/533 (3%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L LC   + +   +Q+H+R        +   L+  L+  Y   G L  +++VF+ +   
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
            +  + T++      GE    L +Y  M ++ +     ++P ++++C+ L D  SG ++H
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAV 209
           + +VKLG+ S   + +ALV  Y K D     +    +R F   + +     WNS++S   
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKND-----DLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAVVSDFCKDL 268
            +GKS ++ ELF+ M M G   +S T+++ L +       +LG+ +H  V   S    +L
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V  AL++MY++   +  A+ +  +M++ D V WN +I  Y Q+   KE+LE    M+ +
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC- 387
           G ++D  +  + +++   + N+  G ++HA V+++G D  + V N+LIDMY +C +L C 
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKC-NLTCY 439

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
             + F  +  K ++SW+++I GY  +D  +EAL LF ++  + +E+D + + +IL A   
Sbjct: 440 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 499

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + ++  VK +H + ++ GL      N  + + Y KC  +  A  +F  E I  KD+++W 
Sbjct: 500 LKSMLIVKEIHCHILRKGLLDTVIQNELVDV-YGKCRNMGYATRVF--ESIKGKDVVSWT 556

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           SMIS+ A +G+ S+  +L+ +M ++ +  D +  L +L+A  +   + +GR I
Sbjct: 557 SMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREI 609


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 225/683 (32%), Positives = 358/683 (52%), Gaps = 20/683 (2%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           M   HS +LL L          H R I L G   +   ++NLI SYA    L+ + QVF+
Sbjct: 1   MKRLHSLTLLGLIAT-------HCRAIKL-GSIADPYTANNLITSYAKCTELNSAHQVFD 52

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
            +   +++ +  I+   +  G+ + T  +   M   +      T+  +++  + +     
Sbjct: 53  EMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKL 112

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLIS 206
           G+++H+ ++K+G       G AL++ Y KC   D G+   + M +R +      WN+L++
Sbjct: 113 GQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNY----VSWNTLVA 168

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              + G  + +F +   M +EG E D GT+  LL         +L   +HC  V      
Sbjct: 169 SYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLEL 228

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFD-KMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
             +V  A ++ YS+  SL+DA+ +FD  +  +D V WN M+ AY        + ++ + M
Sbjct: 229 FNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDM 288

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED- 384
              GF  D +T    V + S  ++   GK +H  V++ G D  V V N+LI MY    D 
Sbjct: 289 QNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDR 348

Query: 385 -LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  A +IF S+  K   +W+S++ GYV    S +ALRLF +M+   +E+D  T   ++ 
Sbjct: 349 CMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIR 408

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C ++  L+  +  H  ++K+G ++ S V +++   Y+KCG IE A + F+    D+   
Sbjct: 409 SCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNA-- 466

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           I WNS+I  YA+HG  +    L+  MK+  V+ D ITF+ +LTAC + GLVEEG    + 
Sbjct: 467 IVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFIES 526

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M+  +G  P QEHYA  ++L GRAGH+ +A  LV+ MPF+PDA V   LL AC+   + E
Sbjct: 527 MESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIE 586

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           LA   A+ L+ +EPE    YV+LS +Y     W   A +   +R+RG+KK PG SWIE+ 
Sbjct: 587 LASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMMRERGVKKVPGWSWIEVK 646

Query: 684 KLVHEFWAADQSHPQADAIYTIL 706
             VH F A D SHPQ + IY +L
Sbjct: 647 NNVHAFNAEDHSHPQCEEIYILL 669


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 208/593 (35%), Positives = 338/593 (56%), Gaps = 14/593 (2%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           S N+  +  IL+ L K GE    L + K +    +      Y  ++++C+ +L F  G +
Sbjct: 22  SDNTNPFSKILQ-LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQ 80

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAV 209
           IHA V+K G  FD F  VG++L+  Y K    F   + +    F KD+ S W S+IS  V
Sbjct: 81  IHAHVIKSGLEFDRF--VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVIS-WTSMISGYV 137

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + GK   S ELF  M   G E ++ TL  ++++  EL  L+LGRI H V +   F  +  
Sbjct: 138 RVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYV 197

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS- 328
           + +AL+ M+ +  +L+DA+ LFD++ + D + W  +ISA  ++ F  E+L     M R  
Sbjct: 198 IASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDH 257

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   D FT    +++   +  ++ GK++HA V+  G    V V +SL+DMY +C  +  +
Sbjct: 258 GMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGES 317

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           ++IFD +  K  VSWS+++ GY  +      +++F +M+    +VD      IL  C  +
Sbjct: 318 QRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGL 373

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            A+   K +H   ++ G      V +A+   YAKCGCIE A  +FD+  +  +++ITWNS
Sbjct: 374 AAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPV--RNLITWNS 431

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI  +A++G   +  +++ QM +  ++PD I+F+G+L AC + GLV+EGR  F  M + Y
Sbjct: 432 MIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDY 491

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G +   EHY+ MV+LLGRAG ++EA  L++   F+ D+ +W  LL AC   +  E+AE  
Sbjct: 492 GIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERI 551

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           A++++ +EP+   +YVLL+N+Y A G+WN   ++R  ++DRG+ K PG SWIE
Sbjct: 552 AKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 604



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 241/486 (49%), Gaps = 21/486 (4%)

Query: 37  SLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL-LSLSQQVFNSIT 92
           SLL  C       H  QIHA ++I  GL  +  + ++L+  Y  LG     +++VF+ + 
Sbjct: 64  SLLQTCTKVLAFNHGLQIHA-HVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLF 122

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + + + +++    + G+   +L ++ +M    + P   T   VI++CS L D   G  
Sbjct: 123 VKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRI 182

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
            H  V+  GFDS   +  AL++ + + +   ++ + +     +     W S+IS   +N 
Sbjct: 183 FHGVVLGRGFDSNYVIASALIDMHGR-NCALDDARQLFDELLEPDAICWTSIISALTRND 241

Query: 213 KSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
             +++   F  + R  G   D  T   +L +   L  L+ G+ VH   + + FC ++ V 
Sbjct: 242 FFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVE 301

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           ++L+ MY K  S+ +++ +FD+M  K+ V W+ ++  Y Q+G  K  +++     R   +
Sbjct: 302 SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF----RKMEK 357

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            DL+     + + + +  +  GK++H   +R G    V V ++L+D+Y +C  +  A+ I
Sbjct: 358 VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTI 417

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  + +++W+SMI G+  + +  EALR+F++M  EG++ D+++ I IL AC + G +
Sbjct: 418 FDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLV 477

Query: 452 EH-----VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           +      +     Y +K+G+   S +   +     + G +E A E+  E      D   W
Sbjct: 478 DEGREYFISMTKDYGIKVGIEHYSCMVDLL----GRAGLLEEA-EILIETSDFRDDSSLW 532

Query: 507 NSMISA 512
            +++ A
Sbjct: 533 AALLGA 538



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 150/300 (50%), Gaps = 18/300 (6%)

Query: 19  LRFPANQTRPHMTATHSFS---LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLI 72
           LRF  +  R H      F+   +L  C N   L+Q   +HA+ +I  G   N+++ S+L+
Sbjct: 247 LRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAK-VITTGFCGNVVVESSLV 305

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           D Y   G +  SQ++F+ +   NS+ +  +L    + G+++  + ++++M    +Y    
Sbjct: 306 DMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLY---- 361

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-Q 191
            +  ++R+C+ L     G+++H Q ++ G      V  ALV+ Y KC G  E  + +  Q
Sbjct: 362 CFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC-GCIEYAQTIFDQ 420

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
              ++L + WNS+I    QNG+ E++  +F  M  EG + D  + I +L +      ++ 
Sbjct: 421 MPVRNLIT-WNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDE 479

Query: 252 GRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
           GR  + +++  D+   + +   + ++ +  +   LE+A++L +    + D  +W  ++ A
Sbjct: 480 GR-EYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGA 538


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 212/660 (32%), Positives = 354/660 (53%), Gaps = 7/660 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-SITSPNSLLYGTILKNLSK 108
           Q+HA   +  GL  ++ +++ L+  Y   G +  +++VF+ +    N++ +  ++    K
Sbjct: 121 QVHA-VAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVK 179

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                  + ++ +M    + P E  +  V+ +C+   D  +G K+HA VV+ G+D     
Sbjct: 180 NDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFT 239

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +ALV+ Y K  G       +  +  K     WN+ IS  V +G  + + EL   M+  G
Sbjct: 240 ANALVDMYSKL-GDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 229 AEFDSGTLINLLRSTVELKSLELG--RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
              +  TL ++L++     +      R +H   + +    D  +  AL+ MY+K   L+D
Sbjct: 299 LVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDD 358

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +F+ +  KD ++WN +IS     G   ESL L   M + G   +  T  A + S ++
Sbjct: 359 ARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTAS 418

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           ++ I    Q+HA   + G      V N LID Y +C  L  A K+F+   +  +++++SM
Sbjct: 419 LEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSM 478

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I      D   +A++LF EM  +G+E D   + ++L AC ++ A E  K +H + +K   
Sbjct: 479 ITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKF 538

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            +      A+  +YAKCG IE A   F    +  K +++W++MI   A+HG   +   ++
Sbjct: 539 MTDVFAGNALVYTYAKCGSIEDADLAF--SGLPDKGVVSWSAMIGGLAQHGHGKRALDVF 596

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M    + P+ IT   +L AC +AGLV+E +  F  MKE +G + ++EHY+ M++LLGR
Sbjct: 597 RRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGR 656

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG +D+A ELV  MPF+ +A VWG LL+A ++H + EL +L AEKL  +EPE +G +VLL
Sbjct: 657 AGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLL 716

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +N YA+AG W+ VAK+R  ++D  +KK P  SW+E+   VH F   D+SHP+A  IY  L
Sbjct: 717 ANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAKL 776



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 159/588 (27%), Positives = 269/588 (45%), Gaps = 58/588 (9%)

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           M   E   P + R  +    F+ G  IHA ++K G        + L+ FY KC       
Sbjct: 1   MRSPESISPLLTRYAATQSLFL-GAHIHAHLLKSGL--LHAFRNHLLSFYSKC-----RL 52

Query: 187 KGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            G  +R F +        W+SL++    N    ++   F+ MR  G   +   L  +L+ 
Sbjct: 53  PGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKC 112

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVV 301
             +     LG  VH VAV +    D+ V  AL++MY     +++A+ +FD+ + D++ V 
Sbjct: 113 APDAG---LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVS 169

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN M+SA+ ++    +++EL   MV SG R + F     V++ +  +++E G+++HA V+
Sbjct: 170 WNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVV 229

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           R G D  V   N+L+DMY +  D++ A  +F  V    VVSW++ I G V H     AL 
Sbjct: 230 RTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALE 289

Query: 422 LFSEMKLEGVEVDFVTIINILP--ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L  +MK  G+  +  T+ +IL   A    GA    + +HG+ +K   +S   +  A+   
Sbjct: 290 LLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDM 349

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAK G ++ A ++F  E I  KD++ WN++IS  +  G   +   L+ +M++     +  
Sbjct: 350 YAKYGLLDDARKVF--EWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRT 407

Query: 540 TFLGLL--TACVNA--------------GLVEEGRII-------FKEMKESYGYEPSQEH 576
           T   +L  TA + A              G + +  ++       +K     Y  +  +EH
Sbjct: 408 TLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEH 467

Query: 577 -------YASMVNLLGRAGHMDEARELVKDM---PFKPDARVWGPLLSACKMHSETELAE 626
                  + SM+  L +  H ++A +L  +M     +PD  V   LL+AC   S  E  +
Sbjct: 468 SSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 527

Query: 627 LTAEKLIS---MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
                LI    M    AGN ++ +  YA  G         + L D+G+
Sbjct: 528 QVHAHLIKRKFMTDVFAGNALVYT--YAKCGSIEDADLAFSGLPDKGV 573


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 336/580 (57%), Gaps = 13/580 (2%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENE 186
           P   T+P +IR+        S  ++HA  ++LG    S    G +LV  Y++     E  
Sbjct: 68  PDGFTFPSLIRAAP---SNASAAQLHACALRLGLVRPSVFTSG-SLVHAYLRFGRISEAY 123

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           K   +   +D+ + WN+++S   +N ++ ++  LF  M  EG   D+ T+ ++L   V L
Sbjct: 124 KVFDEMSERDVPA-WNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL 182

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
               L  ++H  AV     K+L V  AL+ +Y KL  LE+A+ +F  M  +D V WN +I
Sbjct: 183 GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSII 242

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S   Q G    +L++   M  SG   D+ T ++  S+I+   +    K +H  V+R G D
Sbjct: 243 SGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD 302

Query: 367 YQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              +   N+++DMY +  ++  A+++FDS+  +  VSW+++I GY+ +  + EA+  +  
Sbjct: 303 VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGH 362

Query: 426 M-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           M K EG++    T +++LPA  ++GAL+    +H  S+K+GLN    V T +   YAKCG
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCG 422

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  LF  EK+  +    WN++IS    HG  ++   L+++M+Q  ++PD +TF+ L
Sbjct: 423 KLAEAMLLF--EKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSL 480

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC +AGLV++GR  F  M+ +Y   P  +HYA M ++LGRAG +DEA   +++MP KP
Sbjct: 481 LAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKP 540

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           D+ VWG LL AC++H   E+ ++ ++ L  ++PEN G YVL+SN+YA  GKW+GV ++R+
Sbjct: 541 DSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRS 600

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQS--HPQADAI 702
            +R + L+KTPG S IE+ + V+ F++ +Q+  HPQ + I
Sbjct: 601 LVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEI 640



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/576 (25%), Positives = 263/576 (45%), Gaps = 61/576 (10%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SL+    +     Q+HA  + L  +  ++  S +L+ +Y   G +S + +VF+ ++  + 
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDV 134

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
             +  +L  L +     + + ++ +M  + +     T   V+  C  L D +    +H  
Sbjct: 135 PAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVY 194

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLAVQNGKSE 215
            VK G D    V +AL++ Y K  G  E  + +    + +DL + WNS+IS   Q G++ 
Sbjct: 195 AVKHGLDKELFVCNALIDVYGKL-GMLEEAQCVFHGMECRDLVT-WNSIISGCEQRGQTA 252

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSVNTAL 274
            + ++F+ MR  G   D  TL++L  +  +       + +HC  +   +   D+    A+
Sbjct: 253 AALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAI 312

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRAD 333
           + MY+KL+++E A+ +FD M  +D V WN +I+ Y Q+G   E++E    M +  G +A 
Sbjct: 313 VDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAI 372

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T ++ + + S +  ++ G +MHA  ++ G +  V V   LID+Y +C  L  A  +F+
Sbjct: 373 QGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFE 432

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  ++   W+++I G   H    EAL LFS M+ EG++ D VT +++L AC        
Sbjct: 433 KMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAAC-------- 484

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT----WNSM 509
                                      +  G ++     FD  ++ + DI+     +  M
Sbjct: 485 ---------------------------SHAGLVDQGRSFFDVMQV-TYDIVPIAKHYACM 516

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI----IFKEMK 565
                + G   + F     M    ++PD   +  LL AC   G VE G++    +F+   
Sbjct: 517 ADMLGRAGQLDEAFNFIQNMP---IKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDP 573

Query: 566 ESYGYEPSQEHYASMVNLLGRAGH---MDEARELVK 598
           E+ GY      Y  M N+  + G    +DE R LV+
Sbjct: 574 ENVGY------YVLMSNMYAKVGKWDGVDEVRSLVR 603


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 228/724 (31%), Positives = 371/724 (51%), Gaps = 78/724 (10%)

Query: 17  KFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           K  + P    +P +T     + L  C+N +   QI ++ +IL G  ++   +S L+    
Sbjct: 11  KPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQ-MILSGFFKDSFAASRLLKFST 69

Query: 77  NLGLLSLSQ--QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-T 133
            L  ++++Q  Q+F+ I +PN  +  T++K   +     K + VYK M L+S   A++ T
Sbjct: 70  ELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFM-LESNVAADNYT 128

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           YP + +SCS  L    G+ I   V+K+GFDS   + + L+  Y  C    +  K      
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
             D+ S WNS+++  V  G  E++ +++  M                             
Sbjct: 189 VLDMVS-WNSMLAGYVLVGNVEEAKDVYDRMPE--------------------------- 220

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
                       +++  + +++ ++ K  ++E+A  LF++M  KD V W+ +IS Y Q+ 
Sbjct: 221 ------------RNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNE 268

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             +E+L L   M  +G   D    ++ +S+ S +  +  GK +H  V++ G +  V++ N
Sbjct: 269 MYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQN 328

Query: 374 SLIDMYCECEDL---------NC----------------------ARKIFDSVKTKTVVS 402
           +LI MY  CE++         +C                      AR +FDS+  K  VS
Sbjct: 329 ALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVS 388

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           WS+MI GY   D+  E L LF EM++EG + D   +++++ AC ++ AL+  K++H Y  
Sbjct: 389 WSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIR 448

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K GL     + T +   Y K GC+E A E+F  + ++ K + TWN++I   A +G   + 
Sbjct: 449 KNGLKINIILGTTLINMYMKLGCVEDALEVF--KGLEEKGVSTWNALILGLAMNGLVDKS 506

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            K +++MK+  V P+ ITF+ +L AC + GLV+EG   F  M + +   P+ +HY  MV+
Sbjct: 507 LKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVD 566

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG + EA EL++ MP  PD   WG LL ACK + + E  E    KL+ + P++ G 
Sbjct: 567 LLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGF 626

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            VLLSNIYA+ G W  V ++R  +R  G+ KTPGCS IE    VHEF A D++HPQ + I
Sbjct: 627 NVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHI 686

Query: 703 YTIL 706
             +L
Sbjct: 687 EHML 690



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLI 72
           V F       T+P  T     S+++ C +   L Q   IHA YI  +GL  N+IL + LI
Sbjct: 407 VLFQEMQIEGTKPDETIL--VSVISACTHLAALDQGKWIHA-YIRKNGLKINIILGTTLI 463

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           + Y  LG +  + +VF  +       +  ++  L+  G  +K+L  + +M    + P E 
Sbjct: 464 NMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEI 523

Query: 133 TYPFVIRSC 141
           T+  V+ +C
Sbjct: 524 TFVAVLGAC 532


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/668 (32%), Positives = 353/668 (52%), Gaps = 28/668 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLS--------LSQQVFNSITSPNSLLYG 100
           Q+IH  Y + +GL          +D+Y    L+         LS +VF+ +   N + + 
Sbjct: 181 QEIHG-YCLRNGLFD--------MDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWN 231

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
            I+      G+  K L +Y  M ++ +     T   VI++C+       G ++H   +K 
Sbjct: 232 AIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIK- 290

Query: 161 GFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
            F+  +D  + +AL+  Y   +G  E+   +         + WNS+IS  +  G   ++ 
Sbjct: 291 -FNLINDLFILNALLNMYSD-NGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAI 348

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL-GRIVHCVAVVSDFCKDLSVNTALLSM 277
            LF  MR+E  + D  T+  +L    +L    + GR +H  A+ S    D  +  ALLSM
Sbjct: 349 ALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSM 408

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K   +  A+ +F+KM   D + WN MISA+ QS F  ++ EL + M  S  + + +T 
Sbjct: 409 YVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTI 468

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           ++ ++      ++ +G+ +H   ++NG +   S++ SL +MY  C D   A  +F     
Sbjct: 469 VSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQ 528

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           + +VSW+S+I  Y+ +D + +AL LF+ M  E +E + VTIINIL +C  +  L   + L
Sbjct: 529 RDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCL 587

Query: 458 HGYSMK--LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           H Y+ +  + L   +S+  A    YA+CG ++ A ++F    + ++ I++WN+MI+ Y  
Sbjct: 588 HAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFC--TLQTRSIVSWNAMITGYGM 645

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG        + QM     +P+ ++F  +L+AC ++GL   G  +F  M   +G  P   
Sbjct: 646 HGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLT 705

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY  MV+LLGR GH  EA   +  MP +PDA +W  LLS+C++ S  +L E    KL+ +
Sbjct: 706 HYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVEL 765

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP N GN++LLSNIYAAAG W+ V ++R +LR+RGL K PG SWI IG  VH F A D  
Sbjct: 766 EPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVL 825

Query: 696 HPQADAIY 703
           HPQ++ IY
Sbjct: 826 HPQSERIY 833



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 155/557 (27%), Positives = 271/557 (48%), Gaps = 19/557 (3%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +I+K+ +K       L  Y QM    + P   T P V+++C  L    +G +IH+ + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCI- 86

Query: 159 KLGFDSFDDV--GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
             G D  +DV  G ALV+FY KC    E  K  ++   +DL S WN+LIS  V     ++
Sbjct: 87  -RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVS-WNALISGYVGCLCYKE 144

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALL 275
           +  LF  M+  G   +S T++ LL +  E+  L LG+ +H   + +  F  D  V TAL+
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
             Y +  ++   + +F  M  ++ V WN +I+ +   G   ++L+L   M+  G + D  
Sbjct: 205 GFYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T +  + + +    +  G Q+H   ++      + + N+L++MY +   L  +  +F++V
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC--VNIGALEH 453
            T     W+SMI  Y+      EA+ LF +M+LE ++ D  TI  +L  C  +N G++  
Sbjct: 324 PTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWG 383

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + LH ++MK G+   + +  A+   Y K   I  A  +F  EK+   D+I+WN+MISA+
Sbjct: 384 -RGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVF--EKMRGLDVISWNTMISAF 440

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+    ++ F+L+  M +S+++ +  T + LL  C +   +  GR I     ++ G E +
Sbjct: 441 AQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKN-GLEIN 499

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                S+  +    G    A  +    P + D   W  L+S+   +     A L    +I
Sbjct: 500 TSLNTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLLFNHMI 558

Query: 634 S-MEPENAGNYVLLSNI 649
           S +EP    N V + NI
Sbjct: 559 SELEP----NSVTIINI 571



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 177/360 (49%), Gaps = 6/360 (1%)

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           Q    ++   WNS+I    +          +  M   G   DS T+  +L++   L ++ 
Sbjct: 18  QTHLVNVSKDWNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIG 77

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            G  +H      D   D+ V TAL+  Y K   + +A  +F +M ++D V WN +IS Y 
Sbjct: 78  NGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYV 137

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQV 369
                KE++ L + M ++G   +  T +A + +   M  +  G+++H   LRNG  D   
Sbjct: 138 GCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDA 197

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V  +L+  Y    D   + ++F  +  + +VSW+++I G++      +AL+L+S M +E
Sbjct: 198 YVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIE 256

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEM 488
           G++ D VT++ ++ AC   G L     LH  ++K  L N L  +N A+   Y+  G +E 
Sbjct: 257 GIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILN-ALLNMYSDNGSLES 315

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           +  LF+   + + D   WNSMIS+Y   G  ++   L+ +M+   ++ D+ T   +L+ C
Sbjct: 316 SWALFN--AVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLC 373


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 219/668 (32%), Positives = 353/668 (52%), Gaps = 28/668 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLS--------LSQQVFNSITSPNSLLYG 100
           Q+IH  Y + +GL          +D+Y    L+         LS +VF+ +   N + + 
Sbjct: 181 QEIHG-YCLRNGLFD--------MDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWN 231

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
            I+      G+  K L +Y  M ++ +     T   VI++C+       G ++H   +K 
Sbjct: 232 AIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIK- 290

Query: 161 GFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
            F+  +D  + +AL+  Y   +G  E+   +         + WNS+IS  +  G   ++ 
Sbjct: 291 -FNLINDLFILNALLNMYSD-NGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAI 348

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL-GRIVHCVAVVSDFCKDLSVNTALLSM 277
            LF  MR+E  + D  T+  +L    +L    + GR +H  A+ S    D  +  ALLSM
Sbjct: 349 ALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSM 408

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K   +  A+ +F+KM   D + WN MISA+ QS F  ++ EL + M  S  + + +T 
Sbjct: 409 YVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTI 468

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           ++ ++      ++ +G+ +H   ++NG +   S++ SL +MY  C D   A  +F     
Sbjct: 469 VSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQ 528

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           + +VSW+S+I  Y+ +D + +AL LF+ M  E +E + VTIINIL +C  +  L   + L
Sbjct: 529 RDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCL 587

Query: 458 HGYSMK--LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           H Y+ +  + L   +S+  A    YA+CG ++ A ++F    + ++ I++WN+MI+ Y  
Sbjct: 588 HAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFC--TLQTRSIVSWNAMITGYGM 645

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG        + QM     +P+ ++F  +L+AC ++GL   G  +F  M   +G  P   
Sbjct: 646 HGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLT 705

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY  MV+LLGR GH  EA   +  MP +PDA +W  LLS+C++ S  +L E    KL+ +
Sbjct: 706 HYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVEL 765

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP N GN++LLSNIYAAAG W+ V ++R +LR+RGL K PG SWI IG  VH F A D  
Sbjct: 766 EPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVL 825

Query: 696 HPQADAIY 703
           HPQ++ IY
Sbjct: 826 HPQSERIY 833



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 155/557 (27%), Positives = 271/557 (48%), Gaps = 19/557 (3%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +I+K+ +K       L  Y QM    + P   T P V+++C  L    +G +IH+ + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFI- 86

Query: 159 KLGFDSFDDV--GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
             G D  +DV  G ALV+FY KC    E  K  ++   +DL S WN+LIS  V     ++
Sbjct: 87  -RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVS-WNALISGYVGCLCYKE 144

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALL 275
           +  LF  M+  G   +S T++ LL +  E+  L LG+ +H   + +  F  D  V TAL+
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
             Y +  ++   + +F  M  ++ V WN +I+ +   G   ++L+L   M+  G + D  
Sbjct: 205 GFYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T +  + + +    +  G Q+H   ++      + + N+L++MY +   L  +  +F++V
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC--VNIGALEH 453
            T     W+SMI  Y+      EA+ LF +M+LE ++ D  TI  +L  C  +N G++  
Sbjct: 324 PTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWG 383

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + LH ++MK G+   + +  A+   Y K   I  A  +F  EK+   D+I+WN+MISA+
Sbjct: 384 -RGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVF--EKMRGLDVISWNTMISAF 440

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+    ++ F+L+  M +S+++ +  T + LL  C +   +  GR I     ++ G E +
Sbjct: 441 AQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKN-GLEIN 499

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                S+  +    G    A  +    P + D   W  L+S+   +     A L    +I
Sbjct: 500 TSLNTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLLFNHMI 558

Query: 634 S-MEPENAGNYVLLSNI 649
           S +EP    N V + NI
Sbjct: 559 SELEP----NSVTIINI 571



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 177/360 (49%), Gaps = 6/360 (1%)

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           Q    ++   WNS+I    +          +  M   G   DS T+  +L++   L ++ 
Sbjct: 18  QTHLVNVSKDWNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIG 77

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            G  +H      D   D+ V TAL+  Y K   + +A  +F +M ++D V WN +IS Y 
Sbjct: 78  NGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYV 137

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQV 369
                KE++ L + M ++G   +  T +A + +   M  +  G+++H   LRNG  D   
Sbjct: 138 GCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDA 197

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V  +L+  Y    D   + ++F  +  + +VSW+++I G++      +AL+L+S M +E
Sbjct: 198 YVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIE 256

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEM 488
           G++ D VT++ ++ AC   G L     LH  ++K  L N L  +N A+   Y+  G +E 
Sbjct: 257 GIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILN-ALLNMYSDNGSLES 315

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           +  LF+   + + D   WNSMIS+Y   G  ++   L+ +M+   ++ D+ T   +L+ C
Sbjct: 316 SWALFN--AVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLC 373


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/568 (34%), Positives = 323/568 (56%), Gaps = 11/568 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G+++HA ++K GF     + + ++  Y+KC    + +K   +   +++ S WN +I  +V
Sbjct: 79  GKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVS-WNIMIRASV 137

Query: 210 -QNGKSEKS-----FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
            +N ++E S     F  F+ M +E    D  T   L+    +   +E+G  +HC  V   
Sbjct: 138 GRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVG 197

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D  V  AL+ +Y+K   +E+A+ +F  +S +D V+WN+M+S Y  +  P+E+  +  
Sbjct: 198 FDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFN 257

Query: 324 CMVRSGFRADLFTAIAAVSSIS--TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            M       D FT  + +S IS   ++  ++GKQ+H+ VLR   D  V V ++LI+MY +
Sbjct: 258 SMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAK 317

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
            E++  AR++FD +  + VV+W++MI G+  H    E ++L  EM  EG   D +TI +I
Sbjct: 318 SENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSI 377

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           + +C    A+     +H +++KL      SV  ++  +Y+KCG I  A + F  E     
Sbjct: 378 ISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCF--ELTSQP 435

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D++TW S+I AYA HG   +  +++ +M    ++PD I FLG+L+AC + GLV +G   F
Sbjct: 436 DLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYF 495

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           K M  +Y   P  EHY  +V+LLGR G ++EA E+++ MP + D+   G  + +CK+HS 
Sbjct: 496 KLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSN 555

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            ELA+L AEKL  +EPE + NY ++SNI+A+   W  V ++R  + D+   K PGCSWIE
Sbjct: 556 MELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIE 615

Query: 682 IGKLVHEFWAADQSHPQADAIYTILGIL 709
           IG  +H F + D+SHP A  +Y  L +L
Sbjct: 616 IGNQIHSFVSNDKSHPNALEMYVTLNML 643



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 150/576 (26%), Positives = 270/576 (46%), Gaps = 59/576 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK-NLS 107
           +Q+HA ++I  G  Q L L + ++  Y        ++++F  +   N + +  +++ ++ 
Sbjct: 80  KQLHA-HLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVG 138

Query: 108 KFGEYEKTLL-----VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +  E E + +      +++M L+ M P   T+  +I  C+   D   G ++H   VK+GF
Sbjct: 139 RNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGF 198

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSF 218
           D    VG ALV  Y KC G  EN +    R F D+  R    WN ++S  V N   E++F
Sbjct: 199 DLDCFVGCALVGLYAKC-GFVENAR----RVFCDVSCRDLVMWNVMVSCYVFNSLPEEAF 253

Query: 219 ELFKLMRME---GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
            +F  MR++   G EF   +L++++ S   L+  + G+ VH + +   F  D+ V +AL+
Sbjct: 254 RVFNSMRLDVVNGDEFTFSSLLSVI-SDDALEYYDFGKQVHSLVLRQSFDSDVLVASALI 312

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           +MY+K  ++ DA+ +FD+MS ++ V WN MI  +   G   E ++L+  M+R GF  D  
Sbjct: 313 NMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDEL 372

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  + +SS      I    Q+HA  ++      +SV NSLI  Y +C  +  A K F+  
Sbjct: 373 TISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELT 432

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
               +V+W+S+I  Y  H  + ++  +F +M   G++ D +  + +L AC + G +   K
Sbjct: 433 SQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLV--TK 490

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            LH +  KL  N+   V                             D   +  ++    +
Sbjct: 491 GLHYF--KLMTNAYQIV----------------------------PDSEHYTCLVDLLGR 520

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +G  ++ F++   M    +  D  T    + +C     +E  ++  +++   +  EP + 
Sbjct: 521 YGLINEAFEILRSMP---IEVDSDTLGAFIGSCKLHSNMELAKLAAEKL---FLIEPEKS 574

Query: 576 -HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
            +YA M N+     H  +   + K M  K DA+V G
Sbjct: 575 VNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPG 610



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 198/412 (48%), Gaps = 26/412 (6%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           N L+ + +   L  G+ +H   +   FC+ LS+   +LS+Y K    EDAK LF+++  +
Sbjct: 65  NALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVR 124

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR--------ADLFTAIAAVSSISTMKN 349
           + V WNIMI A        ES  + +C   S FR         D  T    +   +   +
Sbjct: 125 NVVSWNIMIRASVGRNDENESSGMRLCF--SYFRRMLLEMMVPDHITFNGLICLCTQFND 182

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           IE G Q+H   ++ G D    V  +L+ +Y +C  +  AR++F  V  + +V W+ M+  
Sbjct: 183 IEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSC 242

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV---KYLHGYSMKLGL 466
           YV +    EA R+F+ M+L+ V  D  T  ++L + ++  ALE+    K +H   ++   
Sbjct: 243 YVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLL-SVISDDALEYYDFGKQVHSLVLRQSF 301

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +S   V +A+   YAK   I  A  +FDE  I  ++++ WN+MI  +  HGD ++  KL 
Sbjct: 302 DSDVLVASALINMYAKSENIIDARRVFDEMSI--RNVVAWNTMIVGFGNHGDGNEVMKLV 359

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL-- 584
            +M +    PD +T   ++++C  A  + E   +      ++  + S + + S+ N L  
Sbjct: 360 KEMLREGFLPDELTISSIISSCGYASAITETLQV-----HAFAVKLSCQDFLSVANSLIS 414

Query: 585 --GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
              + G +  A +   ++  +PD   W  L+ A   H   E +    EK++S
Sbjct: 415 AYSKCGSITSAFKCF-ELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLS 465


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 304/516 (58%), Gaps = 3/516 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++    ++G    + E++  M++     D  +   +L++   L +LE+GR VH    
Sbjct: 141 WNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIF 200

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D+ V   L+++Y+K   +  A  +F ++ D+  V W  +IS Y Q+G P E+L 
Sbjct: 201 RHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALR 260

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M ++  R D    ++ + + + ++++E GK +H  V++ G + +  +  SL  +Y 
Sbjct: 261 IFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYA 320

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  AR  F+ V+  +++ W++MI GYV +  + EA+ LF  MK + +  D +T+ +
Sbjct: 321 KCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTS 380

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            + AC  IG+LE  +++  Y       +   VNT++  +YAKCG ++MA  +FD  +I  
Sbjct: 381 SIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFD--RIPD 438

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD++ W++M+  Y  HG   +   L+  M+Q+ V P+ +TF+GLLTAC N+GLVEEG  +
Sbjct: 439 KDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDL 498

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M++ YG EP  +HYA +V+LLGRAGH+D A   V +MP +P   VWG LLSACK+H 
Sbjct: 499 FHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHR 557

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
              L E  AE+L S++P N G+YV LSN+YA++  W+ VAK+R  +R++GL K  G S I
Sbjct: 558 HVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVI 617

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           EI   +  F A D++HP++  I+  +  LE  + E 
Sbjct: 618 EINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEA 653



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 224/417 (53%), Gaps = 4/417 (0%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SL++   +  HL QI+A+ +++ GL     L + L++  +N+G +S ++++F+    P+ 
Sbjct: 80  SLIDDSIHKTHLNQIYAK-LLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDV 138

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            L+  I++  S+ G +   + +Y +M +  + P   ++P V+++CS L     G ++H Q
Sbjct: 139 FLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQ 198

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
           + + GF+S   V + LV  Y KC G       +  R        W S+IS   QNG+  +
Sbjct: 199 IFRHGFESDVFVQNGLVALYAKC-GEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIE 257

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH-CVAVVSDFCKDLSVNTALL 275
           +  +F  MR      D   L+++LR+  +++ LE G+ +H CV  +   C +  +  +L 
Sbjct: 258 ALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEC-EFDLLISLT 316

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           S+Y+K   +  A++ F+++ +   + WN MIS Y ++G+ +E++EL   M     R D  
Sbjct: 317 SLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSI 376

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  +++++ + + ++E  + M   +  +     V V+ SLID Y +C  ++ AR +FD +
Sbjct: 377 TVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRI 436

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             K VV WS+M+ GY  H Q  E++ LF  M+  GV  + VT + +L AC N G +E
Sbjct: 437 PDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVE 493



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 188/350 (53%), Gaps = 8/350 (2%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++  S +  +  A+ LFDK  D D  +WN ++  Y + GF   ++E+   M  +    D
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            F+    + + S +  +E G+++H  + R+G +  V V N L+ +Y +C ++  A  +F 
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  +T+VSW+S+I GY  + Q +EALR+FSEM+   V  D++ ++++L A  ++  LEH
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +HG  +K+GL     +  ++   YAKCG + +A   F++  +++  +I WN+MIS Y
Sbjct: 293 GKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQ--VENPSLIFWNAMISGY 350

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII--FKEMKESYGYE 571
            K+G   +  +L+  MK  ++RPD IT    + AC   G +E  R +  +  M E   + 
Sbjct: 351 VKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSE---FR 407

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
                  S+++   + G +D AR +   +P K D  VW  ++    +H +
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-DVVVWSAMMVGYGLHGQ 456


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/519 (36%), Positives = 306/519 (58%), Gaps = 9/519 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELF--KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           +N L+   +  G  E +  LF   L        D  T    L+S   + +L++GR V   
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
           AV      D  V ++L+ MY+    +  A+++FD   +   V+WN +++AY ++G   E 
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           +E+   M+  G   D  T ++ V++   + + + GK +  +V   G      +  +L+DM
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDM 265

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C ++  AR++FD ++++ VV+WS+MI GY   DQ  EAL LFSEM+L  VE + VT+
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTM 325

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           +++L AC  +GALE  K++H Y  +  L+  + + TA+   YAKCGCI+ A E F  E +
Sbjct: 326 VSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAF--ESM 383

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             K+  TW ++I   A +G   +  +L++ M+++ + P  +TF+G+L AC ++ LVEEGR
Sbjct: 384 PVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGR 443

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  M   YG +P  EHY  MV+LLGRAG +DEA + ++ MP +P+A +W  LLS+C +
Sbjct: 444 RHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAV 503

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H    + E   +++IS+ P ++G+YVLLSNIYA+AG+W   A +R  ++DRG++KTPGCS
Sbjct: 504 HRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCS 563

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGR 717
            IE+  +V EF+A D  HP+   IY      ++E M GR
Sbjct: 564 LIELDGVVFEFFAEDSDHPELREIYQ-----KVEEMIGR 597



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 167/365 (45%), Gaps = 11/365 (3%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y +  GL  +  + S+LI  YA+ G ++ ++ VF++      +++  I+    K G++ +
Sbjct: 145 YAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWME 204

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + ++K M    +   E T   V+ +C  + D   G+ +   V + G      +  AL++
Sbjct: 205 VVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMD 264

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y KC      E G  +R F  ++SR    W+++IS   Q  +  ++  LF  M++   E
Sbjct: 265 MYAKC-----GEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVE 319

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T++++L +   L +LE G+ VH             + TAL+  Y+K   ++DA   
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEA 379

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F+ M  K+   W  +I     +G  +E+LEL   M  +G      T I  + + S    +
Sbjct: 380 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLV 439

Query: 351 EWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIK 408
           E G++   ++ R+ G   +V  +  ++D+      ++ A +   ++  +   V W +++ 
Sbjct: 440 EEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLS 499

Query: 409 GYVTH 413
               H
Sbjct: 500 SCAVH 504



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 131/282 (46%), Gaps = 14/282 (4%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           A ++   GL +N  L + L+D YA  G +  ++++F+ + S + + +  ++   ++  + 
Sbjct: 244 AGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQC 303

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            + L ++ +M L  + P + T   V+ +C+ L    +G+ +H+ V +        +G AL
Sbjct: 304 REALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTAL 363

Query: 173 VEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           V+FY KC   D   E  + M  +        W +LI     NG+  ++ ELF  MR  G 
Sbjct: 364 VDFYAKCGCIDDAVEAFESMPVKN----SWTWTALIKGMATNGRGREALELFSSMREAGI 419

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDA 287
           E    T I +L +      +E GR  H  ++  D+     V     ++ +  +   +++A
Sbjct: 420 EPTDVTFIGVLMACSHSCLVEEGR-RHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEA 478

Query: 288 KMLFDKMS-DKDRVVWNIMISA---YYQSGFPKESLELLMCM 325
                 M  + + V+W  ++S+   +   G  +E+L+ ++ +
Sbjct: 479 YQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISL 520


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 237/750 (31%), Positives = 382/750 (50%), Gaps = 66/750 (8%)

Query: 17  KFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLI--LSSNLIDS 74
           K L+     TR    AT   + L  C +  H + +H + I+     Q L+  L++NLI +
Sbjct: 146 KLLQSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIM-----QGLLFHLATNLIGT 200

Query: 75  YANLGLLSLSQQVFNSIT-SPNSLLY-GTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           Y      + +  +   +  SP+S+ +   +++     G       +Y+QM      P   
Sbjct: 201 YIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHY 260

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-- 190
           T+PFV ++C+ L     G  +HA V + GF S   V +A+V  Y KC G   +   M   
Sbjct: 261 TFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKC-GALRHAHNMFDD 319

Query: 191 --QRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELK 247
              R  +DL S WNS++S  +    +  +  LF K+        D  +L+N+L +   L 
Sbjct: 320 LCHRGIQDLVS-WNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLA 378

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +   GR VH  ++ S    D+ V  A++ MY+K   +E+A  +F +M  KD V WN M++
Sbjct: 379 ASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVT 438

Query: 308 AYYQSG--------FPK---------------------------ESLELLMCMVRSGFRA 332
            Y Q+G        F +                           E+L++   M   G R 
Sbjct: 439 GYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRP 498

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLR-----NGSDY---QVSVHNSLIDMYCECED 384
           ++ T ++ +S+  ++  +  GK+ H   ++     +G D     + V N LIDMY +C+ 
Sbjct: 499 NVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQS 558

Query: 385 LNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLE-GVEVDFVTIIN 440
              ARK+FDSV  K + VV+W+ MI GY  H  +  AL+LFS M K++  ++ +  T+  
Sbjct: 559 TEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSC 618

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKID 499
            L AC  + AL   + +H Y ++    S+   V   +   Y+K G ++ A  +FD   + 
Sbjct: 619 ALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDN--MP 676

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            ++ ++W S+++ Y  HG      +++ +M++  + PD ITFL +L AC ++G+V+ G  
Sbjct: 677 QRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGIN 736

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M + +G +P  EHYA MV+L GRAG + EA +L+ +MP +P   VW  LLSAC++H
Sbjct: 737 FFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLH 796

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
           S  EL E  A +L+ +E  N G+Y LLSNIYA A +W  VA++R  ++  G+KK PGCSW
Sbjct: 797 SNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSW 856

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           I+  K V  F+  D+SHPQ+  IY  L  L
Sbjct: 857 IQGRKGVATFYVGDRSHPQSQQIYETLADL 886


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 213/665 (32%), Positives = 358/665 (53%), Gaps = 40/665 (6%)

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           A+   L  +Q+ F S+   ++ +  ++L +L +F      L  +K ++L  ++ +  +  
Sbjct: 41  ASCNALESAQETFTSV---DASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQD 97

Query: 136 FVIRSCSCLLD-------FISGEKIHAQVVKLGFDSFDDVGDALVEFY----IKCDGGFE 184
            ++   S LL           G ++H  ++ LGF+    +   LV FY    +  D    
Sbjct: 98  LIVHPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVI 157

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            E   I   F      WN LIS  V+NG  +K+   +K M  +G   D+ T  ++L++  
Sbjct: 158 TENSNILHPFP-----WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACG 212

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR----V 300
           E   L  G+ VH            S+N    S+Y+ +    +A  LF  M  +D     +
Sbjct: 213 EELDLGFGKEVH-----------ESINA---SLYASMGMWNEAFELFGSMWAEDIELNII 258

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
           +WN +   Y ++G  K +LELL  M + G   D    I  + + S + + + GK++H+  
Sbjct: 259 IWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFA 318

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           +R+      +V N+LI MY  C+DL  A  +F  ++ K++++W+S+I G    D+S EA 
Sbjct: 319 IRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEAS 378

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY-SMKLGLNSLSSVNTAIFIS 479
            L  EM L G+E ++VTI ++LP C  +  L+H K  H Y + +        +  A+   
Sbjct: 379 FLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDM 438

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YA+ G +  A  +FD   +  +D +T+ SMI+ Y   G+     KL+ +M    ++PD I
Sbjct: 439 YARSGKVLEARRVFD--MLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 496

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T + +L+AC ++GLV +G+++F++M+  YG  P  EH+A M +L GRAG +++A+E++++
Sbjct: 497 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 556

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP+KP   +W  L+ AC++H  TE+ E  AEKL+ M+PEN G YVL++N+YAAAG WN +
Sbjct: 557 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKL 616

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
           AK+R F+RD G++K PGC+W+++G     F   D S+  AD IY +L  L + + E    
Sbjct: 617 AKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGYI 676

Query: 720 SSEEL 724
           SSE+ 
Sbjct: 677 SSEDF 681



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 207/439 (47%), Gaps = 18/439 (4%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLI 72
           V  +R  A+     +      SLL+ C + + L   +Q+H  +II  G  Q+ IL   L+
Sbjct: 84  VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHG-HIISLGFEQHPILVPKLV 142

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
             Y+   LL  +  +  +    +   +  ++ +  + G  +K L  YKQM  + + P   
Sbjct: 143 TFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNF 202

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TYP V+++C   LD   G+++H  +    + S     +A           FE    M   
Sbjct: 203 TYPSVLKACGEELDLGFGKEVHESINASLYASMGMWNEA-----------FELFGSMWAE 251

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +     WN++    ++ G  + + EL   MR  G+  DS  LI  L +   +   +LG
Sbjct: 252 DIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLG 311

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H  A+ S F +  +V  AL++MYS+   L+ A +LF  M  K  + WN +IS     
Sbjct: 312 KEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHM 371

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VS 370
              +E+  LL  M+  G   +  T  + +   + + N++ GK+ H  + R   D++  + 
Sbjct: 372 DRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRR-EDFKDHLL 430

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           + N+L+DMY     +  AR++FD +  +  ++++SMI GY    +   AL+LF EM    
Sbjct: 431 LWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQ 490

Query: 431 VEVDFVTIINILPACVNIG 449
           ++ D +T+I +L AC + G
Sbjct: 491 IKPDHITMIAVLSACSHSG 509


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 208/677 (30%), Positives = 371/677 (54%), Gaps = 13/677 (1%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNL----ILSSNLIDSYANLGLLSLSQQVFNSIT 92
           SL+  C + + L Q   R I  H L+ N     IL+++++  Y   G L  +++VF+ + 
Sbjct: 69  SLICACSSSRSLAQ--GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 126

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + Y +++   S+ G+  + + +Y +M    + P +  +  +I++C+C  D + G++
Sbjct: 127 ERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQ 186

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +HAQV+KL   S     +AL+  Y++ +   +  K       KDL S W+S+I+   Q G
Sbjct: 187 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLIS-WSSIIAGFSQLG 245

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLI--NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
              ++    K M   G  F     I  + L++   L   + G  +H + +  +   +   
Sbjct: 246 FEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIA 304

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L  MY++   L+ A+ +F+++   D   WN++I+    +G+  E++ +   M  SGF
Sbjct: 305 GCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGF 364

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D  +  + + + +    +  G Q+H+ +++ G    +SV NSL+ MY  C DL C   
Sbjct: 365 IPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFN 424

Query: 391 IFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           +F+  + K   VSW++++   + H+Q +E LRLF  M +   E D +T+ N+L  CV I 
Sbjct: 425 LFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEIS 484

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L+    +H YS K GL     +   +   YAKCG +  A  +FD   +D+ D+++W+++
Sbjct: 485 SLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFD--SMDNGDVVSWSTL 542

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  YA+ G   +   L+ +MK S + P+ +TF+G+LTAC + GLVEEG  ++  M+  +G
Sbjct: 543 IVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHG 602

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P++EH + +V+LL RAGH++EA   + +M  +PD  VW  LLSACK     +LA+  A
Sbjct: 603 ISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAA 662

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           E ++ ++P N+  +VLL +++A++G W   A +R+ ++   +KK PG SWI++   +H F
Sbjct: 663 ENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWIDVEDKIHIF 722

Query: 690 WAADQSHPQADAIYTIL 706
           +A D  HP+ D IYT+L
Sbjct: 723 FAEDVLHPERDDIYTVL 739



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 200/408 (49%), Gaps = 6/408 (1%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T I+L+ +    +SL  GR +H   + S+   D  +N  +LSMY K  SL DA+ +FD M
Sbjct: 66  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 125

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            +++ V +  +I+ Y Q+G   E++ L + M+++    D F   + + + +   ++  GK
Sbjct: 126 PERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGK 185

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+HA V++  S   +   N+LI MY     ++ A K+F  +  K ++SWSS+I G+    
Sbjct: 186 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLG 245

Query: 415 QSLEALRLFSEMKLEGV-EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
              EAL    EM   GV   +     + L AC ++   ++   +HG  +KL L   +   
Sbjct: 246 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAG 305

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            ++   YA+CG ++ A  +F++  I+  D  +WN +I+  A +G   +   ++++M+ S 
Sbjct: 306 CSLCDMYARCGFLDSARRVFNQ--IERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSG 363

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
             PD I+   LL A      + +G  I   + +  G+        S++ +      +   
Sbjct: 364 FIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKC-GFLADLSVCNSLLTMYTFCSDLYCC 422

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSE-TELAELTAEKLIS-MEPEN 639
             L +D   K D+  W  +L+AC  H +  E+  L    L+S  EP++
Sbjct: 423 FNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDH 470



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 219/482 (45%), Gaps = 5/482 (1%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  +I +CS       G KIH  ++         + + ++  Y KC G   + + +   
Sbjct: 66  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKC-GSLRDAREVFDF 124

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +     + S+I+   QNG+  ++  L+  M       D     +++++      + LG
Sbjct: 125 MPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLG 184

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H   +  +    L    AL++MY +   + DA  +F  +  KD + W+ +I+ + Q 
Sbjct: 185 KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQL 244

Query: 313 GFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           GF  E+L  L  M+  G F  + +   +++ + S++   ++G Q+H   ++         
Sbjct: 245 GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIA 304

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             SL DMY  C  L+ AR++F+ ++     SW+ +I G   +  + EA+ +FSEM+  G 
Sbjct: 305 GCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGF 364

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
             D +++ ++L A     AL     +H + +K G  +  SV  ++   Y  C  +     
Sbjct: 365 IPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFN 424

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           LF++ + +  D ++WN++++A  +H    +  +L+  M  S+  PD IT   LL  CV  
Sbjct: 425 LFEDFR-NKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 483

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             ++ G  +     ++ G    Q     ++++  + G + +AR +   M    D   W  
Sbjct: 484 SSLKLGSQVHCYSWKT-GLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMD-NGDVVSWST 541

Query: 612 LL 613
           L+
Sbjct: 542 LI 543



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 155/335 (46%), Gaps = 34/335 (10%)

Query: 297 KDRVVWNIMISAYYQSGFPKESLELL-MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           K   + N  I++  ++ F +E+LE        S F+  L T I+ + + S+ +++  G++
Sbjct: 26  KTEELMNDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRK 85

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H ++L +   Y   ++N ++ MY +C  L  AR++FD +  + +VS++S+I GY  + Q
Sbjct: 86  IHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQ 145

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA+ L+ +M    +  D     +I+ AC   G +   K LH   +KL  +S      A
Sbjct: 146 EAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNA 205

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV- 534
           +   Y +   +  A ++F    I +KD+I+W+S+I+ +++ G   +      +M    V 
Sbjct: 206 LIAMYVRFNQMSDASKVF--YGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVF 263

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH--------------YASM 580
            P+   F   L AC +             ++  YG   SQ H                S+
Sbjct: 264 HPNEYIFGSSLKACSSL------------LRPDYG---SQIHGLCIKLELTGNAIAGCSL 308

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            ++  R G +D AR +   +  +PD   W  +++ 
Sbjct: 309 CDMYARCGFLDSARRVFNQIE-RPDTASWNVIIAG 342


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 214/662 (32%), Positives = 360/662 (54%), Gaps = 16/662 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q +HA  I +  L     L++NLI  YA  G L  ++ VF ++   N + Y  ++  LS 
Sbjct: 27  QILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSH 86

Query: 109 FGEYEKTLLV--YKQMALQSMYPAEDTYPFVIRSCS----CLLDFISGEKIHAQVVKLGF 162
            G      ++  +++M   ++ P   T+P V  + +    C  D     ++H   +K   
Sbjct: 87  NGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCNFD---ARQVHVLGIKTA- 142

Query: 163 DSFDDV--GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
            S DDV  G +LV FY K    FE  K   +   ++L S W ++IS       ++++  +
Sbjct: 143 -SIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVS-WTTMISGYASKQMAKEALGV 200

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F LMR+     +     ++L + V  + ++ G+ VHCV V +   + +SV  AL++MY+K
Sbjct: 201 FGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAK 260

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             +L  + MLF+  SDK+ + W+ +I+ Y Q+G   ++L+L   M  +GF    FT +  
Sbjct: 261 CGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGV 320

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + S +  IE GKQ H  +L++G + Q+    +L+DMY +      ARK FD +    +
Sbjct: 321 LKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDL 380

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V W+S+I GYV + ++ EAL ++  M++  +  + +T+ ++L AC N+ ALE  K +H  
Sbjct: 381 VLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHAR 440

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           ++K GL    S+ +A+   YAKCG +E    +F   ++  +DI++WN+MIS  +++G   
Sbjct: 441 TIKYGLGPELSIRSALSTMYAKCGSLEEGVLIF--RRMLQRDIVSWNAMISGLSQNGHGR 498

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +  +L+ +M+    +PD ITF+ +L+AC + G+V+ G   F  M + +   P  EHYA M
Sbjct: 499 EALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACM 558

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V++L RAG ++EA+E ++         +W  LL AC+ H   EL     EKL+ +    +
Sbjct: 559 VDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRES 618

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLS+IY A G+   V ++R  ++ RG++K  GCSWIE+   VH F   DQ HPQ +
Sbjct: 619 SAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIE 678

Query: 701 AI 702
            I
Sbjct: 679 EI 680



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 204/399 (51%), Gaps = 16/399 (4%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDF---CKDLSVNTALLSMYSKLASLEDAKMLF 291
           +  NLL    + KSL+ G+I+H   +   +   C  L+ N  L+  Y+K   L  AK++F
Sbjct: 9   SFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANN--LIKFYAKCGHLHGAKLVF 66

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKES--LELLMCMVRSGFRAD--LFTAIAAVSSISTM 347
           + +  K+ V +N +I     +G    +  LEL   M+ +    D   F  +   ++++  
Sbjct: 67  ENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLG 126

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            N +  +Q+H   ++  S   V V +SL++ YC+   +  ARK+FD +  + +VSW++MI
Sbjct: 127 CNFD-ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMI 185

Query: 408 KGYVTHDQSLEALRLFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
            GY +   + EAL +F  M+L EG   +FV   ++L A V    ++  K +H   +K G+
Sbjct: 186 SGYASKQMAKEALGVFGLMRLVEGNLNEFV-FTSVLSALVCPEFVDSGKQVHCVVVKNGV 244

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
               SV  A+   YAKCG +  +  LF  E    K+ ITW+++I+ Y++ GD  +  KL+
Sbjct: 245 LEFVSVLNALVTMYAKCGNLNYSLMLF--EMCSDKNAITWSALITGYSQAGDSHKALKLF 302

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
           ++M  +   P   T +G+L AC +   +EEG+     + +S GYE       ++V++  +
Sbjct: 303 SKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKS-GYETQIYTATALVDMYAK 361

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            G   +AR+   D   +PD  +W  +++    + + E A
Sbjct: 362 FGFTGDARKGF-DFLLEPDLVLWTSIIAGYVQNGKNEEA 399


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 366/689 (53%), Gaps = 80/689 (11%)

Query: 31  TATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           T T+S S+L LC   + L   +++H+  I  + +  + +L   L+  YA  G L   ++V
Sbjct: 99  TKTYS-SVLQLCAGSKSLTDGKKVHS-IIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F+++   N  L+  ++   +K G++++++ ++K M  + +   E   P            
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---EGKRP------------ 201

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
                          +S  ++ D L      CD              +D+ S WNS+IS 
Sbjct: 202 ---------------ESASELFDKL------CD--------------RDVIS-WNSMISG 225

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            V NG +E+  E++K M   G + D  T+I++L       +L LG+ VH +A+ S F + 
Sbjct: 226 YVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERR 285

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           ++ +  LL MYSK   L+ A  +F+KM +++ V W  MI+ Y + G    ++ LL  M +
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK 345

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G + D+    + + + +   +++ GK +H  +  N  +  + V N+L+DMY +C  ++ 
Sbjct: 346 EGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDG 405

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  +F ++  K ++SW++MI                 E+K      D  T+  ILPAC +
Sbjct: 406 ANSVFSTMVVKDIISWNTMI----------------GELK-----PDSRTMACILPACAS 444

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + ALE  K +HGY ++ G +S   V  A+   Y KCG + +A  LFD   I SKD+++W 
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD--MIPSKDLVSWT 502

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            MIS Y  HG  ++    + +M+ + + PD ++F+ +L AC ++GL+E+G   F  MK  
Sbjct: 503 VMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +  EP  EHYA MV+LL R G++ +A E ++ +P  PDA +WG LL  C+++ + ELAE 
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEK 622

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            AE++  +EPEN G YVLL+NIYA A KW  V +MR  +  +GL+K PGCSWIEI   V+
Sbjct: 623 VAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVN 682

Query: 688 EFWAADQ-SHPQADAIYTILGILELEIME 715
            F + +  SHP +  I ++L  +  ++ E
Sbjct: 683 LFVSGNNSSHPHSKKIESLLKKMRRKMKE 711



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 133/517 (25%), Positives = 229/517 (44%), Gaps = 87/517 (16%)

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           I R+  D    +N+ I    Q G  E + EL  +   + +E ++ T  ++L+     KSL
Sbjct: 62  IDRQVTD----YNAKILHFCQLGNLENAMELVCMC--QKSELETKTYSSVLQLCAGSKSL 115

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             G+ VH +   ++   D  +   L+S+Y+    L++ + +FD M  K+  +WN M+S Y
Sbjct: 116 TDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEY 175

Query: 310 YQSGFPKESLELLMCMVRSGFRA------------------------------------- 332
            + G  KES+ L   MV  G                                        
Sbjct: 176 AKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERG 235

Query: 333 --------------DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
                         DL T I+ +   +    +  GK +H+  +++  + +++  N+L+DM
Sbjct: 236 LEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDM 295

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C DL+ A ++F+ +  + VVSW+SMI GY    +S  A+RL  +M+ EGV++D V  
Sbjct: 296 YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVAT 355

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +IL AC   G+L++ K +H Y     + S   V  A+   Y KCG ++ A  +F    +
Sbjct: 356 TSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVV 415

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KDII+WN+MI                      +++PD  T   +L AC +   +E G+
Sbjct: 416 --KDIISWNTMI---------------------GELKPDSRTMACILPACASLSALERGK 452

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            I   +  + GY   +    ++V+L  + G +  AR L   +P K D   W  ++S   M
Sbjct: 453 EIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMISGYGM 510

Query: 619 H--SETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
           H      +A     +   +EP+       +S +YA +
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVS---FISILYACS 544


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 317/564 (56%), Gaps = 5/564 (0%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           ++ +++  CS L D     +IHA VV  G      +   L+          +  + M  +
Sbjct: 31  SFNYLLNCCSSLPDL---SRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQ 87

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             K     WN+LI      G  E++  L+  M   G   D+ T   ++RS   L +L  G
Sbjct: 88  MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREG 147

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + VHC  V   F  D+ V ++L++MYS+       +++F +M  ++ V W  +I+ Y Q+
Sbjct: 148 KEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQN 207

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
            + KE L +   MV SG + +  T ++ + + + ++ +  GK +H   ++ G D  VS+ 
Sbjct: 208 RYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLT 267

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N+LI +Y +C ++  AR +FD +  + +VSW++MI  Y  ++    A++LF  M+ E V+
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D++T+++++ AC ++GAL   +++H    + GL    S+  A+   YAKCG I++A E+
Sbjct: 328 FDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREV 387

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E++  + +++W SMI A A HG      KL+++MK   V+P+  TF  + TAC ++G
Sbjct: 388 F--ERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSG 445

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LVEEGR  F+ M   Y   P  EH A MV+LLGRAG + EA E +  MP +PD  VWG L
Sbjct: 446 LVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGAL 505

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L +C++HS  ELAEL AEKL  ++P+    YVL+SNIYA AG+W   A++R  + +R LK
Sbjct: 506 LGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELK 565

Query: 673 KTPGCSWIEIGKLVHEFWAADQSH 696
           K PG S +E+ +  H F +  +S 
Sbjct: 566 KIPGHSLVEVNRRFHTFLSGSRSQ 589



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 155/546 (28%), Positives = 285/546 (52%), Gaps = 19/546 (3%)

Query: 31  TATHSFS---LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLG-LLSLSQQ 86
           T  HS S   LLN C +   L +IHA  ++ +G  QNL+LS+ LI +   L   +  +++
Sbjct: 25  TNYHSRSFNYLLNCCSSLPDLSRIHA-LVVTNGCGQNLLLSTKLIITACCLAPTMDYARK 83

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           +F+ +   +  L+ T+++  +  G  E+ L +Y  M    ++P   T+PFV+RSC+ L  
Sbjct: 84  MFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSA 143

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
              G+++H  +VK GFDS   V  +LV  Y +       E    +   +++ S W ++I+
Sbjct: 144 LREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVS-WTAVIA 202

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             VQN   ++   +F+ M   G + ++ TL+++L +   L+ L LG+++H   +      
Sbjct: 203 GYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP 262

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+S+  AL+++Y K  ++E A+ LFD M  ++ V WN MI+AY Q+     +++L   M 
Sbjct: 263 DVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQ 322

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
                 D  T ++ +S+ +++  +  G+ MH  V R G +  VS+ N+LIDMY +C +++
Sbjct: 323 AEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNID 382

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            AR++F+ +  ++VVSW+SMI    +H    +AL+LFS MK EGV+ +  T   +  AC 
Sbjct: 383 LAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACR 442

Query: 447 NIGALEHVK-----YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           + G +E  +      +  YS+  G+   + +   +     + G +  A E  D+  ++  
Sbjct: 443 HSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLL----GRAGSLMEAYEFIDKMPVE-P 497

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEGRII 560
           D+  W +++ +   H +      +  ++   D  P  +TF  L++     AG  E+   +
Sbjct: 498 DVSVWGALLGSCRIHSNLELAELVAEKLFLLD--PQTVTFYVLMSNIYAEAGRWEDAARL 555

Query: 561 FKEMKE 566
            K M+E
Sbjct: 556 RKLMEE 561


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 215/660 (32%), Positives = 370/660 (56%), Gaps = 23/660 (3%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKT 115
           I +G    + + ++L+  YA    ++ ++++F+ +   N ++ + +I+   S  G   + 
Sbjct: 85  IKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEA 144

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALV 173
           L ++ +M    +     T+   +++C        G +IHA ++K G   D +  V +ALV
Sbjct: 145 LCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY--VANALV 202

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
             Y++   G   E  +I   F +L+ +    WNS+++  +QNG   ++ E F  ++    
Sbjct: 203 AMYVRF--GKMPEAAVI---FGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADL 257

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + D  ++I+++ ++  L  L  G+ +H  A+ + F  ++ V   L+ MY+K   +     
Sbjct: 258 KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR 317

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD---LFTAIAAVSSIST 346
            FD M+ KD + W    + Y Q+    ++LELL  +   G   D   + + + A   ++ 
Sbjct: 318 AFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNC 377

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +  I   K++H   +R G    V + N++ID+Y EC  ++ A +IF+S++ K VVSW+SM
Sbjct: 378 LGKI---KEIHGYTIRGGLSDPV-LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSM 433

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  YV +  + +AL +FS MK  G+E D+VT+++IL A  ++  L+  K +HG+ ++ G 
Sbjct: 434 ISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGF 493

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
               S++  +   YA+CG +E A ++F   K  ++++I W +MISAY  HG      +L+
Sbjct: 494 ILEGSISNTLVDMYARCGSVEDAYKIFTCTK--NRNLILWTAMISAYGMHGYGEAAVELF 551

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +MK   + PD ITFL LL AC ++GLV EG+   + MK  Y  EP  EHY  +V+LLGR
Sbjct: 552 MRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGR 611

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
              ++EA ++VK M  +P   VW  LL AC++HS  E+ E+ AEKL+ ++ +N GNYVL+
Sbjct: 612 RNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLV 671

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SN++AA G+W  V ++R  ++  GL K PGCSWIE+G  +H F + D+ HP+ D IY  L
Sbjct: 672 SNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKL 731



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 151/554 (27%), Positives = 293/554 (52%), Gaps = 11/554 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G +  ++ +F+ ++  +   +  ++      GE    L +Y++M    +     T+
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P ++++C  + D   G +IH   +K G DSF  V ++LV  Y KC+      + +  R +
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCN-DINGARKLFDRMY 120

Query: 195 --KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
              D+ S WNS+IS    NG   ++  LF  M   G   ++ T    L++  +   ++LG
Sbjct: 121 VRNDVVS-WNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H   + S    D+ V  AL++MY +   + +A ++F  +  KD V WN M++ + Q+
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G   E+LE    +  +  + D  + I+ + +   +  +  GK++HA  ++NG D  + V 
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVG 299

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N+LIDMY +C  ++   + FD +  K ++SW++   GY  +   L+AL L  ++++EG++
Sbjct: 300 NTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMD 359

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           VD   I +IL AC  +  L  +K +HGY+++ GL+     NT I + Y +CG I+ A  +
Sbjct: 360 VDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDV-YGECGIIDYAVRI 418

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E I+ KD+++W SMIS Y  +G  ++  ++++ MK++ + PD +T + +L+A  +  
Sbjct: 419 F--ESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLS 476

Query: 553 LVEEGRIIFK-EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
            +++G+ I    +++ +  E S  +  ++V++  R G +++A ++      + +  +W  
Sbjct: 477 TLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSVEDAYKIFTCTKNR-NLILWTA 533

Query: 612 LLSACKMHSETELA 625
           ++SA  MH   E A
Sbjct: 534 MISAYGMHGYGEAA 547



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 241/463 (52%), Gaps = 28/463 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++   V NG++  + E+++ MR  G  FDS T   LL++   ++ L  G  +H +A+
Sbjct: 26  WNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAI 85

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESL 319
                  + V  +L+++Y+K   +  A+ LFD+M  ++ VV WN +ISAY  +G   E+L
Sbjct: 86  KYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEAL 145

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   M+++G   + +T  AA+ +      I+ G Q+HA +L++G    V V N+L+ MY
Sbjct: 146 CLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMY 205

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
                +  A  IF +++ K +V+W+SM+ G++ +    EAL  F +++   ++ D V+II
Sbjct: 206 VRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSII 265

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +I+ A   +G L + K +H Y++K G +S   V   +   YAKC C+   G  FD   + 
Sbjct: 266 SIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFD--LMA 323

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            KD+I+W +  + YA++  + Q  +L  Q++   +  D      +L AC        G  
Sbjct: 324 HKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC-------RGLN 376

Query: 560 IFKEMKESYGY-------EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
              ++KE +GY       +P  ++  +++++ G  G +D A  + + +  K D   W  +
Sbjct: 377 CLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSM 433

Query: 613 LSACKMH---SETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           +S C +H   +   L   ++ K   +EP+    YV L +I +A
Sbjct: 434 IS-CYVHNGLANKALEVFSSMKETGLEPD----YVTLVSILSA 471



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 214/430 (49%), Gaps = 7/430 (1%)

Query: 30  MTATHSFSL-LNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           +T T++F+  L  CE+   ++   QIHA  I+  G   ++ +++ L+  Y   G +  + 
Sbjct: 157 VTNTYTFAAALQACEDSSFIKLGMQIHAA-ILKSGRVLDVYVANALVAMYVRFGKMPEAA 215

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            +F ++   + + + ++L    + G Y + L  +  +    + P + +   +I +   L 
Sbjct: 216 VIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLG 275

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
             ++G++IHA  +K GFDS   VG+ L++ Y KC       +       KDL S W +  
Sbjct: 276 YLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLIS-WTTAA 334

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +   QN    ++ EL + ++MEG + D+  + ++L +   L  L   + +H   +     
Sbjct: 335 AGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS 394

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
             +  NT ++ +Y +   ++ A  +F+ +  KD V W  MIS Y  +G   ++LE+   M
Sbjct: 395 DPVLQNT-IIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSM 453

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
             +G   D  T ++ +S++ ++  ++ GK++H  ++R G   + S+ N+L+DMY  C  +
Sbjct: 454 KETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSV 513

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A KIF   K + ++ W++MI  Y  H     A+ LF  MK E +  D +T + +L AC
Sbjct: 514 EDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573

Query: 446 VNIGALEHVK 455
            + G +   K
Sbjct: 574 SHSGLVNEGK 583



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 152/285 (53%), Gaps = 3/285 (1%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K  S+ DA+M+FDKMS++    WN M+  Y  +G    +LE+   M   G   D +T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               + +   ++++  G ++H   ++ G D  V V NSL+ +Y +C D+N ARK+FD + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 397 TKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
            +  VVSW+S+I  Y  +    EAL LFSEM   GV  +  T    L AC +   ++   
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H   +K G      V  A+   Y + G +  A  +F    ++ KDI+TWNSM++ + +
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFG--NLEGKDIVTWNSMLTGFIQ 238

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +G +S+  + +  ++ +D++PD ++ + ++ A    G +  G+ I
Sbjct: 239 NGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEI 283


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 208/651 (31%), Positives = 349/651 (53%), Gaps = 45/651 (6%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAED----TYPFVIRSCSCLLDFISGEKIHAQVV 158
           LK+L++ G   K    +  + L +     D    +   ++ SC+ L     G+++HA  +
Sbjct: 9   LKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTI 68

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
            LGF++   +   LV FY       +     +     +    WN LIS  V NG   ++ 
Sbjct: 69  SLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVN-PLPWNLLISSYVNNGLHGEAL 127

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH-CVAVVSDFCKDLSVNTALLSM 277
             ++ M  +G   D+ T  ++L++  E   L+ GR VH  +        +L V+ +L+SM
Sbjct: 128 SAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSM 187

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES------------------- 318
           Y K   L+ A+ LF++M ++D V WN +IS Y   G  KE+                   
Sbjct: 188 YGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITW 247

Query: 319 ----------------LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
                           LELL  M R     D    I  + + S +  I+ G  +HA+ +R
Sbjct: 248 NTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIR 307

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           +  D   +V N+LI MY  C+DL  A  +F S+KTK++ +W+SM+ GY   D+S EA  L
Sbjct: 308 SCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFL 367

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYA 481
           F EM   G+E ++VTI +ILP C  +  L+  K  H Y M+  G      +  ++   YA
Sbjct: 368 FREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYA 427

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           + G +  A  +FD   +  +D +T+ S+I+ Y   G+     KL+ +M +  ++PD +T 
Sbjct: 428 RSGKVLSAKRVFDS--LRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTM 485

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC ++GLV EG ++F++M   YG  P+ EH++ MV+L GRAG +++A++++  MP
Sbjct: 486 VAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMP 545

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           ++P   +W  L+ AC++H  TE+ E  AEKL+ M+PEN G YVL++N++AAAG+W+ +A+
Sbjct: 546 YRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAE 605

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILEL 711
           +RT++RD G++K PGC+W+++G     F   D S   ++ +Y +L G+ +L
Sbjct: 606 VRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDL 656



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 226/489 (46%), Gaps = 46/489 (9%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN----LLRSTVELKSLELGRIVH 256
           +NSL  LA + G   K+FE F L+++  +  +   +++    LL S   LKSL  G+ +H
Sbjct: 6   FNSLKDLA-RKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLH 64

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              +   F   L +   L++ YS  + L DA  +       + + WN++IS+Y  +G   
Sbjct: 65  AHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHG 124

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV-LRNGSDYQVSVHNSL 375
           E+L     MV  G R D FT  + + +     ++++G+++H ++    G  + + VHNSL
Sbjct: 125 EALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSL 184

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           + MY +  +L+ AR++F+ +  +  VSW+ +I  Y +     EA  LF EM+L G EV+ 
Sbjct: 185 VSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNI 244

Query: 436 VTIINI-----------------------------------LPACVNIGALEHVKYLHGY 460
           +T   I                                   L AC +IGA++    +H  
Sbjct: 245 ITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHAS 304

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           +++   +   +V  A+   Y++C  +  A  LF  + I +K + TWNSM+S Y       
Sbjct: 305 AIRSCFDGFDNVRNALITMYSRCKDLRHADILF--KSIKTKSLTTWNSMLSGYTHMDRSE 362

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +   L+ +M  S + P+ +T   +L  C     +++G+     +    G+E     + S+
Sbjct: 363 EASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSL 422

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS--MEPE 638
           V +  R+G +  A+  V D   + D   +  L++   +  E + A    +++I   ++P+
Sbjct: 423 VEMYARSGKVLSAKR-VFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPD 481

Query: 639 NAGNYVLLS 647
                 +LS
Sbjct: 482 QVTMVAVLS 490



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 151/619 (24%), Positives = 267/619 (43%), Gaps = 88/619 (14%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           H  ++  +S  NL   PQ  +Q+HA  I L G   +L+L   L+  Y++  LL+ +  + 
Sbjct: 42  HSISSLLYSCTNLKSLPQG-KQLHAHTISL-GFENHLVLVPKLVTFYSSFSLLADAHTIT 99

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
            +    N L +  ++ +    G + + L  Y++M  + + P   TYP V+++C   LD  
Sbjct: 100 VNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLD 159

Query: 149 SGEKIHAQV-VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
            G ++H  +    G      V ++LV  Y    G F  E    +R F  +  R    WN 
Sbjct: 160 FGREVHESINAAYGHRWNLYVHNSLVSMY----GKF-GELDAARRLFNQMPERDAVSWNG 214

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAE--------------------------------- 230
           +IS     G  +++FELF+ MR+ GAE                                 
Sbjct: 215 IISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCD 274

Query: 231 --FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D   +I  L +   + +++LG ++H  A+ S F    +V  AL++MYS+   L  A 
Sbjct: 275 IDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHAD 334

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +LF  +  K    WN M+S Y      +E+  L   M+ SG   +  T  + +   + + 
Sbjct: 335 ILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVA 394

Query: 349 NIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           N++ GK+ H  ++R  G +  + + NSL++MY     +  A+++FDS++ +  V+++S+I
Sbjct: 395 NLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLI 454

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY    +   AL+LF EM    ++ D VT++ +L AC + G                  
Sbjct: 455 AGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSG------------------ 496

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
            L +    +F   +    I  A E F             + M+  + + G  ++  K+ T
Sbjct: 497 -LVTEGNVLFEKMSTLYGIVPAVEHF-------------SCMVDLFGRAGLLNKAKKVIT 542

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL---L 584
            M     RP    +  L+ AC   G  E G    +++ E     P   +Y  + N+    
Sbjct: 543 SMP---YRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPG--YYVLIANMHAAA 597

Query: 585 GRAGHMDEARELVKDMPFK 603
           GR   + E R  ++D+  +
Sbjct: 598 GRWSKLAEVRTYMRDLGVR 616



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 191/436 (43%), Gaps = 50/436 (11%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANL 78
           P N T P        S+L  C     L   +++H      +G   NL + ++L+  Y   
Sbjct: 140 PDNFTYP--------SVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKF 191

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV- 137
           G L  ++++FN +   +++ +  I+ N +  G +++   ++++M L        T+  + 
Sbjct: 192 GELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIA 251

Query: 138 ------------------IRSCSCLLDFIS----------------GEKIHAQVVKLGFD 163
                             +R C   LD ++                G  IHA  ++  FD
Sbjct: 252 GGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFD 311

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
            FD+V +AL+  Y +C      +      K K L + WNS++S      +SE++  LF+ 
Sbjct: 312 GFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTT-WNSMLSGYTHMDRSEEASFLFRE 370

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLA 282
           M   G E +  T+ ++L     + +L+ G+  HC  +  +  +D L +  +L+ MY++  
Sbjct: 371 MLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSG 430

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +  AK +FD +  +D+V +  +I+ Y   G  K +L+L   M++   + D  T +A +S
Sbjct: 431 KVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLS 490

Query: 343 SISTMKNIEWGKQMHANV-LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TV 400
           + S    +  G  +   +    G    V   + ++D++     LN A+K+  S+  + T 
Sbjct: 491 ACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTT 550

Query: 401 VSWSSMIKGYVTHDQS 416
             W++++     H  +
Sbjct: 551 AMWATLVGACRIHGNT 566


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 204/654 (31%), Positives = 366/654 (55%), Gaps = 4/654 (0%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           I+  G   +L + + L+D Y+ +GLL+ ++QVF+ +   + + + +++   S  G YE+ 
Sbjct: 132 ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEA 191

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           L +Y ++    + P   T   V+ +   LL    G+ +H   +K G +S   V + LV  
Sbjct: 192 LEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAM 251

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           Y+K     +  +   +   +D  S +N++I   ++    E+S  +F L  ++  + D  T
Sbjct: 252 YLKFRRPTDARRVFDEMDVRDSVS-YNTMICGYLKLEMVEESVRMF-LENLDQFKPDLLT 309

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           + ++LR+   L+ L L + ++   + + F  + +V   L+ +Y+K   +  A+ +F+ M 
Sbjct: 310 VSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSME 369

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            KD V WN +IS Y QSG   E+++L   M+    +AD  T +  +S  + + ++++GK 
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG 429

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H+N +++G    +SV N+LIDMY +C ++  + KIF S+ T   V+W+++I   V    
Sbjct: 430 LHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGD 489

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
               L++ ++M+   V  D  T +  LP C ++ A    K +H   ++ G  S   +  A
Sbjct: 490 FATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA 549

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+KCGC+E +  +F  E++  +D++TW  MI AY  +G+  +  + +  M++S + 
Sbjct: 550 LIEMYSKCGCLENSSRVF--ERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIV 607

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD + F+ ++ AC ++GLV+EG   F++MK  Y  +P  EHYA +V+LL R+  + +A E
Sbjct: 608 PDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEE 667

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            ++ MP KPDA +W  +L AC+   + E AE  + ++I + P++ G  +L SN YAA  K
Sbjct: 668 FIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRK 727

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           W+ V+ +R  L+D+ + K PG SWIE+GK VH F + D S PQ++AIY  L IL
Sbjct: 728 WDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEIL 781



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 176/618 (28%), Positives = 323/618 (52%), Gaps = 13/618 (2%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-SPNSL 97
           L+   N   L++IHA  I L GL  +   S  LID Y++    + S  VF  ++ + N  
Sbjct: 14  LSSSSNLNELRRIHALVISL-GLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVY 72

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L+ +I++  SK G + + L  Y ++    + P + T+P VI++C+ L D   G+ ++ Q+
Sbjct: 73  LWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQI 132

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           + +GF+S   VG+ALV+ Y +        +   +   +DL S WNSLIS    +G  E++
Sbjct: 133 LDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSHGYYEEA 191

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            E++  ++      DS T+ ++L +   L  ++ G+ +H  A+ S     + VN  L++M
Sbjct: 192 LEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAM 251

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K     DA+ +FD+M  +D V +N MI  Y +    +ES+ + +  +   F+ DL T 
Sbjct: 252 YLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTV 310

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + +   ++++   K ++  +L+ G   + +V N LID+Y +C D+  AR +F+S++ 
Sbjct: 311 SSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMEC 370

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K  VSW+S+I GY+     +EA++LF  M +   + D +T + ++     +  L+  K L
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGL 430

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H   +K G+    SV+ A+   YAKCG +  + ++F    + + D +TWN++ISA  + G
Sbjct: 431 HSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIF--SSMGTGDTVTWNTVISACVRFG 488

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           D++   ++ TQM++S+V PD+ TFL  L  C +      G+ I   +   +GYE   +  
Sbjct: 489 DFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIG 547

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
            +++ +  + G ++ +  + + M  + D   W  ++ A  M+ E E A    E    ME 
Sbjct: 548 NALIEMYSKCGCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGEKA---LETFADMEK 603

Query: 638 EN--AGNYVLLSNIYAAA 653
                 + V ++ IYA +
Sbjct: 604 SGIVPDSVVFIAIIYACS 621



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 248/487 (50%), Gaps = 15/487 (3%)

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ--R 192
           PF+ R+ S   +     +IHA V+ LG DS D     L++ Y      F      +   R
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKY----SHFREPASSLSVFR 63

Query: 193 KFKDLKS--RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           +    K+   WNS+I    +NG   ++ E +  +R      D  T  +++++   L   E
Sbjct: 64  RVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAE 123

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           +G +V+   +   F  DL V  AL+ MYS++  L  A+ +FD+M  +D V WN +IS Y 
Sbjct: 124 MGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYS 183

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G+ +E+LE+   +  S    D FT  + + +   +  ++ G+ +H   L++G +  V 
Sbjct: 184 SHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVV 243

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V+N L+ MY +      AR++FD +  +  VS+++MI GY+  +   E++R+F E  L+ 
Sbjct: 244 VNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQ 302

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
            + D +T+ ++L AC ++  L   KY++ Y +K G    S+V   +   YAKCG +  A 
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITAR 362

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++F+   ++ KD ++WNS+IS Y + GD  +  KL+  M   + + D IT+L L++    
Sbjct: 363 DVFNS--MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420

Query: 551 AGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
              ++ G+ +    +K     + S  +  +++++  + G + ++ ++   M    D   W
Sbjct: 421 LADLKFGKGLHSNGIKSGICIDLSVSN--ALIDMYAKCGEVGDSLKIFSSMG-TGDTVTW 477

Query: 610 GPLLSAC 616
             ++SAC
Sbjct: 478 NTVISAC 484


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 220/668 (32%), Positives = 360/668 (53%), Gaps = 24/668 (3%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL----- 106
           HAR I++ G   +  LS+NL+  Y+  G LS ++QVF++    + + +  IL        
Sbjct: 100 HAR-IVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 158

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFD 163
           S  G  ++ L +++ +          T   V++ C    CL    + E +H   +K+G +
Sbjct: 159 SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLW---AAEGVHGYAIKIGLE 215

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  ALV  Y KC G   + + +     +     WN ++   VQ G  +++F+LF  
Sbjct: 216 WDVFVSGALVNIYSKC-GRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 224 MRMEGAEFDSGTLINLLRSTV--ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
               G   D  ++  +L   +      LELG+ VH +AV S    D+SV  +L++MYSK+
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 334

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
                A+ +F+ M   D + WN MIS+  QS   +ES+ L + ++  G + D FT +A++
Sbjct: 335 GCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT-LASI 393

Query: 342 SSISTMKN------IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           +  +  K       ++ GKQ+HA+ ++ G D  + V++ ++DMY +C D+  A  +F+ +
Sbjct: 394 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
                V+W+SMI G V +    +ALR++  M+   V  D  T   ++ A   + ALE  +
Sbjct: 454 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 513

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            LH   +KL   S   V T++   YAKCG IE A  LF  +K++ ++I  WN+M+   A+
Sbjct: 514 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLF--KKMNVRNIALWNAMLVGLAQ 571

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG+  +   L+  MK   + PD ++F+G+L+AC +AGL  E       M   YG EP  E
Sbjct: 572 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 631

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY+ +V+ LGRAG + EA ++++ MPFK  A +   LL AC++  + E  +  A +L ++
Sbjct: 632 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFAL 691

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP ++  YVLLSNIYAAA +W+ V   R  ++ + +KK PG SWI++  ++H F   D+S
Sbjct: 692 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRS 751

Query: 696 HPQADAIY 703
           HPQAD IY
Sbjct: 752 HPQADIIY 759


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 316/541 (58%), Gaps = 38/541 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++     +       E++  M   G   ++ T   LL+S  + K+ E GR +H   V
Sbjct: 51  WNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIH-AQV 109

Query: 261 VSDFCK-DLSVNTALLSMYSKLASLEDAKMLFDK-------------------------- 293
           +   C+ D   +T+L+SMY++   LEDA+ +FD                           
Sbjct: 110 MKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSAR 169

Query: 294 -----MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
                ++++D V WN MI+ Y ++   +E+LEL   M+R+  R D  T ++ +S+ +   
Sbjct: 170 KVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSG 229

Query: 349 NIEWGKQMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           +IE G+++H  V   +G    + + N+ I +Y +C D+  A  +F+ +  K VVSW+++I
Sbjct: 230 SIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLI 289

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--G 465
            GY   +   EAL LF EM   G   + VT++++LPAC ++GA++  +++H Y  K   G
Sbjct: 290 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKG 349

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           + + S++ T++   YAKCG IE A ++F+   +  K + +WN+MI  +A HG  +  F L
Sbjct: 350 VTNGSALRTSLIDMYAKCGDIEAAHQVFN--SMMHKSLSSWNAMIFGFAMHGRANAAFDL 407

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +++M+++ + PD IT +GLL+AC ++GL++ GR IFK + + Y   P  EHY  M++LLG
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLG 467

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
            AG   EA E++  MP +PD  +W  LL ACKMH   ELAE  A+KL+ +EPEN+G+YVL
Sbjct: 468 HAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVL 527

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNIYA AG+W  VA++R  L  +G+KK PGCS IEI  +VHEF   D+ HPQ+  IY +
Sbjct: 528 LSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRM 587

Query: 706 L 706
           L
Sbjct: 588 L 588



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 238/489 (48%), Gaps = 69/489 (14%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  VF +   PN L++ T+L+ L+   +    L +Y +M      P   T+PF+++S
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---------- 190
           C+    F  G +IHAQV+KLG +       +L+  Y + +G  E+ + +           
Sbjct: 93  CAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYAR-NGRLEDARKVFDXSSQRDVVS 151

Query: 191 -----------------QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
                            ++ F  +  R    WN++I+  V+N   E++ ELFK M     
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD---FCKDLSVNTALLSMYSKLASLED 286
             D GTL+++L +  +  S+ELGR +H   +V D   F   L +  A + +YSK   +E 
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIH--TLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  LF+ +S KD V WN +I  Y      KE+L L   M+RSG   +  T ++ + + + 
Sbjct: 270 ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 329

Query: 347 MKNIEWGKQMHANV------LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +  I+ G+ +H  +      + NGS    ++  SLIDMY +C D+  A ++F+S+  K++
Sbjct: 330 LGAIDIGRWIHVYIDKRLKGVTNGS----ALRTSLIDMYAKCGDIEAAHQVFNSMMHKSL 385

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            SW++MI G+  H ++  A  LFS M+  G+E D +T++ +L AC + G L+        
Sbjct: 386 SSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLD-------- 437

Query: 461 SMKLGLNSLSSVNTAIFIS--YAKCGC-IEMAGE--LFDE-EKID-----SKDIITWNSM 509
              LG +   SV     I+      GC I++ G   LF E E+I        D + W S+
Sbjct: 438 ---LGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSL 494

Query: 510 ISAYAKHGD 518
           + A   HG+
Sbjct: 495 LKACKMHGN 503



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 168/372 (45%), Gaps = 36/372 (9%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +F+   + + ++WN M+     S      LE+ + MV  G   + +T    + S + 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE---------------------CE-- 383
            K  E G+Q+HA V++ G +     H SLI MY                       C   
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 384 --------DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
                   D+  ARK+FD +  + VVSW++MI GYV +    EAL LF EM    V  D 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 436 VTIINILPACVNIGALEHVKYLHG-YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            T++++L AC   G++E  + +H       G  S   +  A    Y+KCG +E+A  LF 
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF- 274

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            E +  KD+++WN++I  Y     + +   L+ +M +S   P+ +T L +L AC + G +
Sbjct: 275 -EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 333

Query: 555 EEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           + GR I   + K   G         S++++  + G ++ A ++   M  K  +  W  ++
Sbjct: 334 DIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS-WNAMI 392

Query: 614 SACKMHSETELA 625
               MH     A
Sbjct: 393 FGFAMHGRANAA 404



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 178/386 (46%), Gaps = 15/386 (3%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +      ++++  + LI  YA+ G +  +++VF+ IT  + + +  ++    +   Y
Sbjct: 137 ARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGY 196

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV-VKLGFDSFDDVGDA 171
           E+ L ++K+M   ++ P E T   V+ +C+       G +IH  V    GF S   + +A
Sbjct: 197 EEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNA 256

Query: 172 LVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            +  Y KC G  E   G+ +    KD+ S WN+LI         +++  LF+ M   G  
Sbjct: 257 FIGLYSKC-GDVEIASGLFEGLSCKDVVS-WNTLIGGYTHMNLYKEALLLFQEMLRSGES 314

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCV--AVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +  T++++L +   L ++++GR +H      +       ++ T+L+ MY+K   +E A 
Sbjct: 315 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAH 374

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+ M  K    WN MI  +   G    + +L   M ++G   D  T +  +S+ S   
Sbjct: 375 QVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSG 434

Query: 349 NIEWGKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCARKIFDSVKTKT-VVSW 403
            ++ G+ +  +V +   DY ++     +  +ID+         A +I   +  +   V W
Sbjct: 435 LLDLGRHIFKSVTQ---DYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIW 491

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLE 429
            S++K    H  +LE    F++  +E
Sbjct: 492 CSLLKACKMHG-NLELAESFAQKLME 516



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 152/340 (44%), Gaps = 43/340 (12%)

Query: 357 HANVLRNG---SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           HA +++ G   ++Y +S    L  +    + L  A  +F++ +   ++ W++M++G  + 
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
              +  L ++  M   G   +  T   +L +C      E  + +H   MKLG       +
Sbjct: 62  SDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAH 121

Query: 474 TAIFISYAKCGCIEMAGELFDE-----------------------------EKIDSKDII 504
           T++   YA+ G +E A ++FD                              + I  +D++
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WN+MI+ Y ++  + +  +L+ +M +++VRPD  T + +L+AC  +G +E GR I   +
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSETE 623
            + +G+  S +   + + L  + G ++ A  L + +  K D   W  L+     M+   E
Sbjct: 242 DDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCK-DVVSWNTLIGGYTHMNLYKE 300

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAA-------GKW 656
              L  E L S E  N  +  +LS + A A       G+W
Sbjct: 301 ALLLFQEMLRSGESPN--DVTMLSVLPACAHLGAIDIGRW 338



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 124/284 (43%), Gaps = 8/284 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C     ++   +IH      HG   +L + +  I  Y+  G + ++  +F  ++ 
Sbjct: 220 SVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSC 279

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++   +    Y++ LL++++M      P + T   V+ +C+ L     G  I
Sbjct: 280 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI 339

Query: 154 HAQVVKL--GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           H  + K   G  +   +  +L++ Y KC G  E    +         S WN++I     +
Sbjct: 340 HVYIDKRLKGVTNGSALRTSLIDMYAKC-GDIEAAHQVFNSMMHKSLSSWNAMIFGFAMH 398

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSV 270
           G++  +F+LF  MR  G E D  TL+ LL +      L+LGR I   V    +    L  
Sbjct: 399 GRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEH 458

Query: 271 NTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSG 313
              ++ +       ++A+ +   M  + D V+W  ++ A    G
Sbjct: 459 YGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHG 502


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 214/666 (32%), Positives = 368/666 (55%), Gaps = 11/666 (1%)

Query: 34  HSFS-LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           H+F  +L LC +   +    ++H     L G   ++ + + L+  Y N G L+ ++++F+
Sbjct: 160 HTFPFVLKLCSDSFDICKGMEVHGVVFKL-GFDTDVYVGNTLLMLYGNCGFLNDARRLFD 218

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY-PAEDTYPFVIRSCSCLLDFI 148
            +   + + + TI+  LS  G+Y +    Y  M L+S+  P   +   ++   + L D  
Sbjct: 219 EMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEE 278

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
              +IH   VK+G DS     +ALV+ Y KC G  +    +     +  +  WNS+I+  
Sbjct: 279 MTRRIHCYSVKVGLDSQVTTCNALVDAYGKC-GSVKALWQVFNETVEKNEVSWNSIINGL 337

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
              G+   +   F++M   GA+ +S T+ ++L   VEL+  + G+ +H  ++      D+
Sbjct: 338 ACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDI 397

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +  +L+ MY+K     +A  +F  +  ++ V WN MI+ Y  +  P E++  ++ M  +
Sbjct: 398 FIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQET 457

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   +  T    + + + +  +  GK++HA  +R G    + V NSLIDMY +C  L+ A
Sbjct: 458 GECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSA 517

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R +F++ + K  VS++ +I GY   D  L++L LFSEM+L G + D V+ + ++ AC N+
Sbjct: 518 RNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANL 576

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            AL+  K +HG +++  L S   V+ ++   Y KCG I++A  LF++  I  KD+ +WN+
Sbjct: 577 AALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQ--ILFKDVASWNT 634

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI  Y   G+      ++  M+   V+ DL++++ +L+AC + GLVE G   F EM    
Sbjct: 635 MILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR 694

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
             EP++ HY  MV+LLGRAG ++EA +L++ +P  PDA +WG LL AC+++   EL    
Sbjct: 695 -LEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRA 753

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AE L  ++P++ G Y+LLSNIYA  G+W+   K+R  ++ RG KK PGCSW++I   VH 
Sbjct: 754 AEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHA 813

Query: 689 FWAADQ 694
           F A ++
Sbjct: 814 FVAEER 819



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 169/612 (27%), Positives = 306/612 (50%), Gaps = 45/612 (7%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANL----GLLSLSQQVFN 89
           +LL LC   Q L   +Q+HA  I+   L +++ L ++LI +YA         SL  Q F 
Sbjct: 59  NLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQ 118

Query: 90  SITSPNSLLYGTILKNLS-----KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           +  +  + L+ T+++  S      F  +E     Y +M  + +   + T+PFV++ CS  
Sbjct: 119 NCRT--AFLWNTLIRAHSIAWNGTFDGFE----TYNRMVRRGVQLDDHTFPFVLKLCSDS 172

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D   G ++H  V KLGFD+   VG+ L+  Y  C  GF N+    +R F ++  R    
Sbjct: 173 FDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNC--GFLNDA---RRLFDEMPERDVVS 227

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++I L   NG   ++   +  M +    + +  ++I+LL  +  L+  E+ R +HC +
Sbjct: 228 WNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYS 287

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V       ++   AL+  Y K  S++    +F++  +K+ V WN +I+     G   ++L
Sbjct: 288 VKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDAL 347

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
                M+ +G + +  T  + +  +  ++  + GK++H   +R G++  + + NSLIDMY
Sbjct: 348 NAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMY 407

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +      A  IF ++  + +VSW++MI  Y  +   LEA+R   +M+  G   + VT  
Sbjct: 408 AKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFT 467

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           N+LPAC  +G L   K +H   +++GL S   V+ ++   YAKCGC+  A  +F+  +  
Sbjct: 468 NVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-- 525

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            KD +++N +I  Y++  D  Q   L+++M+    +PD+++F+G+++AC N   +++G  
Sbjct: 526 -KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG-- 582

Query: 560 IFKEMKESYGYEPSQEHYA------SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
                KE +G       Y+      S+++   + G +D A  L   + FK D   W  ++
Sbjct: 583 -----KEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFK-DVASWNTMI 636

Query: 614 SACKMHSETELA 625
               M  E E A
Sbjct: 637 LGYGMIGELETA 648



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 178/371 (47%), Gaps = 12/371 (3%)

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFC-KDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           INLL    +++SL   + VH + +++ F  + +S+  +L+  Y+K         LF++  
Sbjct: 58  INLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTF 117

Query: 296 DKDRV--VWNIMISAY---YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
              R   +WN +I A+   +   F  +  E    MVR G + D  T    +   S   +I
Sbjct: 118 QNCRTAFLWNTLIRAHSIAWNGTF--DGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDI 175

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
             G ++H  V + G D  V V N+L+ +Y  C  LN AR++FD +  + VVSW+++I   
Sbjct: 176 CKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLL 235

Query: 411 VTHDQSLEALRLFSEMKLEGV-EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
             +    EA   +  M L  V + + V++I++LP    +   E  + +H YS+K+GL+S 
Sbjct: 236 SVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQ 295

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
            +   A+  +Y KCG ++   ++F+E     K+ ++WNS+I+  A  G        +  M
Sbjct: 296 VTTCNALVDAYGKCGSVKALWQVFNETV--EKNEVSWNSIINGLACKGRCWDALNAFRMM 353

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
             +  +P+ +T   +L   V     + G+ I        G E       S++++  ++GH
Sbjct: 354 IDAGAQPNSVTISSILPVLVELECFKAGKEI-HGFSMRMGTETDIFIANSLIDMYAKSGH 412

Query: 590 MDEARELVKDM 600
             EA  +  ++
Sbjct: 413 STEASTIFHNL 423


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 207/660 (31%), Positives = 353/660 (53%), Gaps = 10/660 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + I   G   ++ + ++L+D+Y         + VF+ +   N + + T++   ++
Sbjct: 117 RQLHCQCIKF-GFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYAR 175

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               E+ L ++ +M  +   P   T+   +   +       G ++H  VVK G D    V
Sbjct: 176 NSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+  Y+KC G     + +  +        WNS+IS    NG   ++  +F  MR+  
Sbjct: 236 SNSLINLYLKC-GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNH 294

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 +  ++++    LK L     +HC  V   F  D ++ TAL+  YSK  ++ DA 
Sbjct: 295 VRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDAL 354

Query: 289 MLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            LF +      VV W  MIS + Q+   +E++ L   M R G R + FT    ++++  +
Sbjct: 355 RLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVI 414

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
              E    +HA V++   +   +V  +L+D Y +   ++ A K+F  +  K +V+WS+M+
Sbjct: 415 SPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAML 470

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV-NIGALEHVKYLHGYSMKLGL 466
            GY    ++  A+++FSE+   GV+ +  T  +IL  C     ++   K  HG+++K  L
Sbjct: 471 AGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL 530

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +S   V++A+   YAK G IE A E+F  ++   KD+++WNSMIS YA+HG   +   ++
Sbjct: 531 DSSLCVSSALLTMYAKKGHIESAEEVFKRQR--EKDLVSWNSMISGYAQHGQAMKALDVF 588

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +MK+  V+ D +TF+G+  AC +AGLVEEG   F  M       P++EH + MV+L  R
Sbjct: 589 KEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSR 648

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG +++A +++ +MP    + +W  +L+AC++H +TEL  L AEK+I+M PE++  YVLL
Sbjct: 649 AGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLL 708

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SN+YA +G W   AK+R  + +R +KK PG SWIE+    + F A D+SHP  D IY  L
Sbjct: 709 SNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKL 768



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 235/465 (50%), Gaps = 12/465 (2%)

Query: 166 DDVGDALVEFYIKCDGGFENEK-----GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           +++G+    F I C G   + +      +  +     +  + SL+    ++G+++++  L
Sbjct: 25  NELGNLKPNFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRL 84

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  ++  G E D     ++L+ +  L     GR +HC  +   F  D+SV T+L+  Y K
Sbjct: 85  FLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMK 144

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
            ++ +D + +FD+M +++ V W  +IS Y ++   +E L L M M   G + + FT  AA
Sbjct: 145 GSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAA 204

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +  ++       G Q+H  V++NG D  + V NSLI++Y +C ++  AR +FD  + K+V
Sbjct: 205 LGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSV 264

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+W+SMI GY  +   LEAL +F  M+L  V +   +  +I+  C N+  L   + LH  
Sbjct: 265 VTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCS 324

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            +K G     ++ TA+ ++Y+KC  +  A  LF E      ++++W +MIS + ++    
Sbjct: 325 VVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLG-NVVSWTAMISGFLQNDGKE 383

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +   L+++MK+  VRP+  T+  +LTA       E    + K       YE S     ++
Sbjct: 384 EAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT-----NYERSSTVGTAL 438

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++   + G +DEA ++   +  K D   W  +L+      ETE A
Sbjct: 439 LDAYVKLGKVDEAAKVFSGIDNK-DIVAWSAMLAGYAQAGETEAA 482



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/552 (26%), Positives = 269/552 (48%), Gaps = 29/552 (5%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +  +F+     +   Y ++L   S+ G  ++   ++  +    M      +  V++ 
Sbjct: 47  LYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKV 106

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
            + L D + G ++H Q +K GF     VG +LV+ Y+K    F++ + +    F ++K R
Sbjct: 107 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMK-GSNFKDGRNV----FDEMKER 161

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               W +LIS   +N  +E+   LF  M+ EG + +S T    L    E      G  VH
Sbjct: 162 NVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 221

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            V V +   K + V+ +L+++Y K  ++  A++LFDK   K  V WN MIS Y  +G   
Sbjct: 222 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 281

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+L +   M  +  R    +  + +   + +K + + +Q+H +V++ G  +  ++  +L+
Sbjct: 282 EALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALM 341

Query: 377 DMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
             Y +C  +  A ++F        VVSW++MI G++ +D   EA+ LFSEMK +GV  + 
Sbjct: 342 VAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNE 401

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   IL A   I   E    +H   +K      S+V TA+  +Y K G ++ A ++F  
Sbjct: 402 FTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVF-- 455

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             ID+KDI+ W++M++ YA+ G+     K+++++ +  V+P+  TF  +L  C  A    
Sbjct: 456 SGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA-ATTAS 514

Query: 556 EGRIIFKEMKESYGY------EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
            G     + K+ +G+      + S    ++++ +  + GH++ A E+ K    K D   W
Sbjct: 515 MG-----QGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREK-DLVSW 568

Query: 610 GPLLSACKMHSE 621
             ++S    H +
Sbjct: 569 NSMISGYAQHGQ 580


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 214/666 (32%), Positives = 368/666 (55%), Gaps = 11/666 (1%)

Query: 34  HSFS-LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           H+F  +L LC +   +    ++H     L G   ++ + + L+  Y N G L+ ++++F+
Sbjct: 11  HTFPFVLKLCSDSFDICKGMEVHGVVFKL-GFDTDVYVGNTLLMLYGNCGFLNDARRLFD 69

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY-PAEDTYPFVIRSCSCLLDFI 148
            +   + + + TI+  LS  G+Y +    Y  M L+S+  P   +   ++   + L D  
Sbjct: 70  EMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEE 129

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
              +IH   VK+G DS     +ALV+ Y KC G  +    +     +  +  WNS+I+  
Sbjct: 130 MTRRIHCYSVKVGLDSQVTTCNALVDAYGKC-GSVKALWQVFNETVEKNEVSWNSIINGL 188

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
              G+   +   F++M   GA+ +S T+ ++L   VEL+  + G+ +H  ++      D+
Sbjct: 189 ACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDI 248

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +  +L+ MY+K     +A  +F  +  ++ V WN MI+ Y  +  P E++  ++ M  +
Sbjct: 249 FIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQET 308

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   +  T    + + + +  +  GK++HA  +R G    + V NSLIDMY +C  L+ A
Sbjct: 309 GECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSA 368

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R +F++ + K  VS++ +I GY   D  L++L LFSEM+L G + D V+ + ++ AC N+
Sbjct: 369 RNVFNTSR-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANL 427

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            AL+  K +HG +++  L S   V+ ++   Y KCG I++A  LF++  I  KD+ +WN+
Sbjct: 428 AALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQ--ILFKDVASWNT 485

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI  Y   G+      ++  M+   V+ DL++++ +L+AC + GLVE G   F EM    
Sbjct: 486 MILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQR 545

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
             EP++ HY  MV+LLGRAG ++EA +L++ +P  PDA +WG LL AC+++   EL    
Sbjct: 546 -LEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRA 604

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AE L  ++P++ G Y+LLSNIYA  G+W+   K+R  ++ RG KK PGCSW++I   VH 
Sbjct: 605 AEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHA 664

Query: 689 FWAADQ 694
           F A ++
Sbjct: 665 FVAEER 670



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 258/506 (50%), Gaps = 27/506 (5%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           + T+PFV++ CS   D   G ++H  V KLGFD+   VG+ L+  Y  C  GF N+    
Sbjct: 10  DHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNC--GFLNDA--- 64

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVE 245
           +R F ++  R    WN++I L   NG   ++   +  M +    + +  ++I+LL  +  
Sbjct: 65  RRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAA 124

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L+  E+ R +HC +V       ++   AL+  Y K  S++    +F++  +K+ V WN +
Sbjct: 125 LEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSI 184

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+     G   ++L     M+ +G + +  T  + +  +  ++  + GK++H   +R G+
Sbjct: 185 INGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGT 244

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           +  + + NSLIDMY +      A  IF ++  + +VSW++MI  Y  +   LEA+R   +
Sbjct: 245 ETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQ 304

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+  G   + VT  N+LPAC  +G L   K +H   +++GL S   V+ ++   YAKCGC
Sbjct: 305 MQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGC 364

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  +F+  +   KD +++N +I  Y++  D  Q   L+++M+    +PD+++F+G++
Sbjct: 365 LHSARNVFNTSR---KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVI 421

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA------SMVNLLGRAGHMDEARELVKD 599
           +AC N   +++G       KE +G       Y+      S+++   + G +D A  L   
Sbjct: 422 SACANLAALKQG-------KEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQ 474

Query: 600 MPFKPDARVWGPLLSACKMHSETELA 625
           + FK D   W  ++    M  E E A
Sbjct: 475 ILFK-DVASWNTMILGYGMIGELETA 499



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 182/374 (48%), Gaps = 4/374 (1%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G + D  T   +L+   +   +  G  VH V     F  D+ V   LL +Y     
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVS 342
           L DA+ LFD+M ++D V WN +I     +G   E+      M+ RS  + +L + I+ + 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
             + +++ E  +++H   ++ G D QV+  N+L+D Y +C  +    ++F+    K  VS
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVS 180

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+S+I G     +  +AL  F  M   G + + VTI +ILP  V +   +  K +HG+SM
Sbjct: 181 WNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSM 240

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           ++G  +   +  ++   YAK G    A  +F    +D ++I++WN+MI+ YA +    + 
Sbjct: 241 RMGTETDIFIANSLIDMYAKSGHSTEASTIF--HNLDRRNIVSWNAMIANYALNRLPLEA 298

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +   QM+++   P+ +TF  +L AC   G +  G+ I   M    G         S+++
Sbjct: 299 IRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLFVSNSLID 357

Query: 583 LLGRAGHMDEAREL 596
           +  + G +  AR +
Sbjct: 358 MYAKCGCLHSARNV 371



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 4/277 (1%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           MVR G + D  T    +   S   +I  G ++H  V + G D  V V N+L+ +Y  C  
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVDFVTIINILP 443
           LN AR++FD +  + VVSW+++I     +    EA   +  M L  V + + V++I++LP
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
               +   E  + +H YS+K+GL+S  +   A+  +Y KCG ++   ++F+E     K+ 
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETV--EKNE 178

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++WNS+I+  A  G        +  M  +  +P+ +T   +L   V     + G+ I   
Sbjct: 179 VSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEI-HG 237

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
                G E       S++++  ++GH  EA  +  ++
Sbjct: 238 FSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL 274


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 326/588 (55%), Gaps = 16/588 (2%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+PF +++CS L D   G  IH   +  G  +   V  AL++ Y+KC    +    
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFE--LFKLMRMEGAEFDSGTLINLLRSTVEL 246
                 +DL + WN++++    +G    +    L   M+M     ++ TL+ LL    + 
Sbjct: 68  FATMPARDLVA-WNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 126

Query: 247 KSLELGRIVH--CVAVV--------SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
            +L  G  VH  C+           S     + + TALL MY+K  SL  A+ +FD M  
Sbjct: 127 GALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 186

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQ 355
           ++ V W+ +I  +       ++  L   M+  G      T+IA A+ + +++ ++  G+Q
Sbjct: 187 RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQ 246

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +HA + ++G    ++  NSL+ MY +   ++ A  +FD +  K  VS+S+++ GYV + +
Sbjct: 247 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
           + EA  +F +M+   VE D  T+++++PAC ++ AL+H +  HG  +  GL S +S+  A
Sbjct: 307 AEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA 366

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG I+++ ++F+   + S+DI++WN+MI+ Y  HG   +   L+ +M      
Sbjct: 367 LIDMYAKCGRIDLSRQVFN--MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFP 424

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +TF+ LL+AC ++GLV EG+  F  M   YG  P  EHY  MV+LL R G +DEA E
Sbjct: 425 PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYE 484

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            ++ MP + D RVW  LL AC+++   +L +  +  +  + PE  GN+VLLSNIY+AAG+
Sbjct: 485 FIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGR 544

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           ++  A++R   + +G KK+PGCSWIEI   +H F   DQSHPQ+  IY
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIY 592



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 215/463 (46%), Gaps = 33/463 (7%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P N T P      S    + C    H   IHA      GL  +L +S+ L+D Y     L
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHA------GLQADLFVSTALLDMYVKCACL 61

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL--LVYKQMALQSMYPAEDTYPFVIR 139
             +  +F ++ + + + +  +L   +  G Y   +  L+  QM +  + P   T   ++ 
Sbjct: 62  PDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLP 121

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDD----------VGDALVEFYIKCDGGFENEKGM 189
             +       G  +HA  ++       +          +G AL++ Y KC          
Sbjct: 122 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLL-----Y 176

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTV 244
            +R F  + +R    W++LI   V   +  ++F LFK M  +G  F S T I + LR+  
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 236

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  L +G  +H +   S    DL+   +LLSMY+K   ++ A  LFD+M+ KD V ++ 
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++S Y Q+G  +E+  +   M       D  T ++ + + S +  ++ G+  H +V+  G
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 356

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              + S+ N+LIDMY +C  ++ +R++F+ + ++ +VSW++MI GY  H    EA  LF 
Sbjct: 357 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFL 416

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYL-----HGYSM 462
           EM   G   D VT I +L AC + G +   K+      HGY +
Sbjct: 417 EMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 214/451 (47%), Gaps = 26/451 (5%)

Query: 14  GHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQN------ 64
            H+  ++   ++ RP   A+   +LL L      L Q   +HA Y I   LH N      
Sbjct: 97  AHLLSMQMQMHRLRP--NASTLVALLPLLAQQGALAQGTSVHA-YCIRACLHPNRNSKSK 153

Query: 65  ----LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
               ++L + L+D YA  G L  +++VF+++ + N + +  ++          +  L++K
Sbjct: 154 LTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFK 213

Query: 121 QMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            M  Q + + +  +    +R+C+ L     GE++HA + K G  +    G++L+  Y K 
Sbjct: 214 AMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 273

Query: 180 DGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            G  +    +  +   KD  S +++L+S  VQNG++E++F +FK M+    E D+ T+++
Sbjct: 274 -GLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 331

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ +   L +L+ GR  H   ++     + S+  AL+ MY+K   ++ ++ +F+ M  +D
Sbjct: 332 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ-MH 357
            V WN MI+ Y   G  KE+  L + M   GF  D  T I  +S+ S    +  GK   H
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 451

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMI---KGYVTH 413
                 G   ++  +  ++D+      L+ A +   S+  +  V  W +++   + Y   
Sbjct: 452 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 511

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           D   +  R+  E+  EG   +FV + NI  A
Sbjct: 512 DLGKKVSRMIQELGPEGTG-NFVLLSNIYSA 541



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 153/331 (46%), Gaps = 19/331 (5%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+R     + +T   A+ + S + +   G+ +H + +  G    + V  +L+DMY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR--LFSEMKLEGVEVDFVTIINIL 442
           L  A  IF ++  + +V+W++M+ GY  H     A+   L  +M++  +  +  T++ +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 443 PACVNIGALEHVKYLHGYSMKLGL----NSLSSVN------TAIFISYAKCGCIEMAGEL 492
           P     GAL     +H Y ++  L    NS S +       TA+   YAKCG +  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNA 551
           FD   + +++ +TW+++I  +      +Q F L+  M  Q        +    L AC + 
Sbjct: 181 FDA--MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             +  G  +   + +S G         S++++  +AG +D+A  L  +M  K D   +  
Sbjct: 239 DHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSA 296

Query: 612 LLSACKMHSETELAELTAEKL--ISMEPENA 640
           L+S    +   E A L  +K+   ++EP+ A
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAA 327


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 204/632 (32%), Positives = 353/632 (55%), Gaps = 21/632 (3%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           ++I  G  +++ + + +ID YA    +  + + F  +   N + + TI+    +  +   
Sbjct: 273 WVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSIS 332

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
               +K+M          T   V+ +C+  +      ++H+ + K GF    +V  AL+ 
Sbjct: 333 AFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALIN 392

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            Y K          + +R F++++S      W  +IS   Q+G + ++ ELF+ M  EG 
Sbjct: 393 MYSKI-----GVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGL 447

Query: 230 ---EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
              +F S ++++++       SL LGR++HC  +      D+SV ++L +MYSK  SLE+
Sbjct: 448 RPDKFCSSSVLSII------DSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEE 501

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           +  +F++M DKD V W  MI+ + +    +++++L   M+    R D  T  AA+++ S 
Sbjct: 502 SYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSA 561

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           + ++E GK++H   LR     +V V  +L++MY +C  +  AR++FD +  K   S SS+
Sbjct: 562 LHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSL 621

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           + GY  +    +AL LF E+++  + +D  T+ +++ A   + +L+    LH    K+GL
Sbjct: 622 VSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGL 681

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           N+  SV +++   Y+KCG I+   ++F  E+I+  D+I+W +MI +YA+HG  ++  K+Y
Sbjct: 682 NAEVSVGSSLVTMYSKCGSIDECHKVF--EQIEKPDLISWTAMIVSYAQHGKGAEALKVY 739

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M++   +PD +TF+G+L+AC + G+VEEG      M + YG EP   HYA MV+LLGR
Sbjct: 740 DLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGR 799

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           +G + EA   + +MP +PDA +WG LL+ACK+H + EL  L A+++I +EP  AG YV L
Sbjct: 800 SGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTL 859

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           SNI A  G W  V K+R+ +   G+KK PG S
Sbjct: 860 SNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 286/564 (50%), Gaps = 9/564 (1%)

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
           +G   N  + + +ID +A L     + +VF  +   N + +  I+    K  E    L +
Sbjct: 176 NGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDL 235

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           + QM  +   P   T+  ++ +C+ L +   G  +   V+K G      VG A+++ Y K
Sbjct: 236 FCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAK 295

Query: 179 CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           C    +  K  ++   +++ S W ++IS  VQ   S  +F  FK MR  G + ++ T+ +
Sbjct: 296 CRDMDQAVKEFLRMPIRNVVS-WTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITS 354

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM-SDK 297
           +L +  E   ++    +H     + F  D +V++AL++MYSK+  ++ ++ +F +M S K
Sbjct: 355 VLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTK 414

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +W +MISA+ QSG    ++EL   M++ G R D F    + S +S + ++  G+ +H
Sbjct: 415 NLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKF---CSSSVLSIIDSLSLGRLIH 471

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             +L+ G    +SV +SL  MY +C  L  +  +F+ +  K  VSW+SMI G+  HD + 
Sbjct: 472 CYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAE 531

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +A++LF EM LE +  D +T+   L AC  + +LE  K +HGY+++  +     V  A+ 
Sbjct: 532 QAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALV 591

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y+KCG I +A  +FD   +  KD  + +S++S YA++G       L+ +++ +D+  D
Sbjct: 592 NMYSKCGAIVLARRVFD--MLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWID 649

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
             T   ++ A      ++ G  +   + +  G        +S+V +  + G +DE  ++ 
Sbjct: 650 SFTVSSVIGAVAILNSLDIGTQLHACVTK-MGLNAEVSVGSSLVTMYSKCGSIDECHKVF 708

Query: 598 KDMPFKPDARVWGPLLSACKMHSE 621
           + +  KPD   W  ++ +   H +
Sbjct: 709 EQIE-KPDLISWTAMIVSYAQHGK 731



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 224/458 (48%), Gaps = 46/458 (10%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN LIS   QN   E S+  F  MR  G + +  T  ++L +   L S   G +V+ +A+
Sbjct: 115 WNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLAL 174

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            + F  +  V   ++ +++KL S EDA  +F  +  ++ V WN +IS   ++     +L+
Sbjct: 175 KNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALD 234

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M    F  + FT  + +++ + ++ +E+G+ +   V++ G+   V V  ++ID+Y 
Sbjct: 235 LFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYA 294

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C D++ A K F  +  + VVSW+++I G+V  D S+ A   F EM+  G +++  TI +
Sbjct: 295 KCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITS 354

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC     ++    LH +  K G    S+V++A+   Y+K G ++++  +F E +  +
Sbjct: 355 VLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREME-ST 413

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT-----------FLGLLTACV 549
           K++  W  MISA+A+ G   +  +L+ +M Q  +RPD               LG L  C 
Sbjct: 414 KNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCY 473

Query: 550 ---------------------NAGLVEEGRIIFKEMKESYGYEPSQEH--YASMVNLLGR 586
                                  G +EE   +F++M       P +++  +ASM+     
Sbjct: 474 ILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQM-------PDKDNVSWASMITGFSE 526

Query: 587 AGHMDEARELVKDM---PFKPDARVWGPLLSACK-MHS 620
             H ++A +L ++M     +PD       L+AC  +HS
Sbjct: 527 HDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHS 564



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 170/350 (48%), Gaps = 11/350 (3%)

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           +  +L+  Y K  S+  A  LFDK    + + WNI+IS   Q+   ++S      M  SG
Sbjct: 83  MTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSG 142

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           F  + FT  + +S+ + + +  +G+ +++  L+NG      V   +ID++ +      A 
Sbjct: 143 FDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDAL 202

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F  V  + VV W+++I G V + ++  AL LF +M       +  T  +IL AC  + 
Sbjct: 203 RVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALE 262

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            LE  + + G+ +K G      V TAI   YAKC  ++ A + F    I  +++++W ++
Sbjct: 263 ELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPI--RNVVSWTTI 320

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG----RIIFKEMK 565
           IS + +  D    F  + +M++   + +  T   +LTAC    +++E       IFK   
Sbjct: 321 ISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKT-- 378

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              G+       ++++N+  + G +D +  + ++M    +  +W  ++SA
Sbjct: 379 ---GFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISA 425


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 308/529 (58%), Gaps = 15/529 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVA 259
           WNS++   V +    ++ + +  M        D  T  +LL+    L   ++G+++H   
Sbjct: 46  WNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQV 105

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V      DL + T LL+MY+    L+ A+ LF++M  +++VVW  MIS Y ++  P E+L
Sbjct: 106 VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEAL 165

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   M   GF  D  T    VS+ + +K++  G ++H+++          + ++L++MY
Sbjct: 166 LLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMY 225

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL-EGVEVDFVTI 438
            +C DL  AR++FD +  K V +WS++I GYV +++S EAL+LF E+     +  + VTI
Sbjct: 226 AKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTI 285

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + ++ AC  +G LE  +++H Y  +       S+N ++   ++KCG I+ A  +FD   +
Sbjct: 286 LAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDS--M 343

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KD+I+WNSM++ +A HG   +    +  M+ +D++PD ITF+G+LTAC +AGLV+EG+
Sbjct: 344 SYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +F E++  YG     EHY  MV+LL RAG + EARE ++ MP +PD  +WG +L AC++
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           ++  EL E  A  L+ +EP N G Y+LLSNIYA    WN V K+R  + ++G++KTPGCS
Sbjct: 464 YNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCS 523

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
            + I  + H F A D SHP+         I E+ IM   R+  E+LK +
Sbjct: 524 SVVIDNIAHSFLAGDCSHPE---------IAEISIM--LRQVREKLKLA 561



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 203/386 (52%), Gaps = 4/386 (1%)

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAED 132
           S  +LG+   +  VF      + L + ++L+         + L  Y +M  +S   P   
Sbjct: 22  SMGSLGV-GYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRF 80

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T+P +++ C+ LL+F  G+ +H QVVK    S   +   L+  Y  C G  ++ + + +R
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC-GDLKSARFLFER 139

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
                K  W S+IS  ++N    ++  L+K M  +G   D  T+  L+ +  ELK L +G
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVG 199

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H      D      + +AL++MY+K   L+ A+ +FDK+SDKD   W+ +I  Y ++
Sbjct: 200 MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKN 259

Query: 313 GFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
               E+L+L   +   S  R +  T +A +S+ + + ++E G+ +H  + R    + VS+
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSL 319

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
           +NSLIDM+ +C D++ A++IFDS+  K ++SW+SM+ G+  H    EAL  F  M+   +
Sbjct: 320 NNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDL 379

Query: 432 EVDFVTIINILPACVNIGALEHVKYL 457
           + D +T I +L AC + G ++  K L
Sbjct: 380 QPDEITFIGVLTACSHAGLVQEGKKL 405



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 172/360 (47%), Gaps = 10/360 (2%)

Query: 57  ILHG------LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +LHG      LH +L + + L++ YA  G L  ++ +F  +   N +++ +++    K  
Sbjct: 100 VLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
              + LL+YK+M      P E T   ++ +C+ L D   G K+H+ + ++       +G 
Sbjct: 160 CPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS 219

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK-LMRMEGA 229
           ALV  Y KC G  +  + +  +        W++LI   V+N +S ++ +LF+ +      
Sbjct: 220 ALVNMYAKC-GDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             +  T++ ++ +  +L  LE GR VH     +     +S+N +L+ M+SK   ++ AK 
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +FD MS KD + WN M++ +   G  +E+L     M  +  + D  T I  +++ S    
Sbjct: 339 IFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGL 398

Query: 350 IEWGKQMHANV-LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI 407
           ++ GK++   +    G   +   +  ++D+ C    L  AR+    +  +   + W SM+
Sbjct: 399 VQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSML 458



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACV-----NAGLVE 555
           D++TWNSM+ A+       +  + YT+M ++S   PD  TF  LL  C        G V 
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G+++ K M  S  Y  +     +++N+    G +  AR L + M  + +  VW  ++S 
Sbjct: 102 HGQVV-KYMLHSDLYIET-----TLLNMYAACGDLKSARFLFERMGHR-NKVVWTSMISG 154


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 326/588 (55%), Gaps = 16/588 (2%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+PF +++CS L D   G  IH   +  G  +   V  AL++ Y+KC    +    
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFE--LFKLMRMEGAEFDSGTLINLLRSTVEL 246
                 +DL + WN++++    +G    +    L   M+M     ++ TL+ LL    + 
Sbjct: 68  FATMPARDLVA-WNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 126

Query: 247 KSLELGRIVH--CVAVV--------SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
            +L  G  VH  C+           S     + + TALL MY+K  SL  A+ +FD M  
Sbjct: 127 GALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 186

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA-AVSSISTMKNIEWGKQ 355
           ++ V W+ +I  +       ++  L   M+  G      T+IA A+ + +++ ++  G+Q
Sbjct: 187 RNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQ 246

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +HA + ++G    ++  NSL+ MY +   ++ A  +FD +  K  VS+S+++ GYV + +
Sbjct: 247 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
           + EA  +F +M+   VE D  T+++++PAC ++ AL+H +  HG  +  GL S +S+  A
Sbjct: 307 AEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA 366

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG I+++ ++F+   + S+DI++WN+MI+ Y  HG   +   L+ +M      
Sbjct: 367 LIDMYAKCGRIDLSRQVFN--MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFP 424

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +TF+ LL+AC ++GLV EG+  F  M   YG  P  EHY  MV+LL R G +DEA E
Sbjct: 425 PDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYE 484

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            ++ MP + D RVW  LL AC+++   +L +  +  +  + PE  GN+VLLSNIY+AAG+
Sbjct: 485 FIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGR 544

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           ++  A++R   + +G KK+PGCSWIEI   +H F   DQSHPQ+  IY
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIY 592



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 215/463 (46%), Gaps = 33/463 (7%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P N T P      S    + C    H   IHA      GL  +L +S+ L+D Y     L
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHA------GLQADLFVSTALLDMYVKCACL 61

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL--LVYKQMALQSMYPAEDTYPFVIR 139
             +  +F ++ + + + +  +L   +  G Y   +  L+  QM +  + P   T   ++ 
Sbjct: 62  PDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLP 121

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDD----------VGDALVEFYIKCDGGFENEKGM 189
             +       G  +HA  ++       +          +G AL++ Y KC          
Sbjct: 122 LLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLL-----Y 176

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTV 244
            +R F  + +R    W++LI   V   +  ++F LFK M  +G  F S T I + LR+  
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 236

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  L +G  +H +   S    DL+   +LLSMY+K   ++ A  LFD+M+ KD V ++ 
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++S Y Q+G  +E+  +   M       D  T ++ + + S +  ++ G+  H +V+  G
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 356

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              + S+ N+LIDMY +C  ++ +R++F+ + ++ +VSW++MI GY  H    EA  LF 
Sbjct: 357 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFL 416

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYL-----HGYSM 462
           EM   G   D VT I +L AC + G +   K+      HGY +
Sbjct: 417 EMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 214/451 (47%), Gaps = 26/451 (5%)

Query: 14  GHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQN------ 64
            H+  ++   ++ RP   A+   +LL L      L Q   +HA Y I   LH N      
Sbjct: 97  AHLLSMQMQMHRLRP--NASTLVALLPLLAQQGALAQGTSVHA-YCIRACLHPNRNSKSK 153

Query: 65  ----LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
               ++L + L+D YA  G L  +++VF+++ + N + +  ++          +  L++K
Sbjct: 154 LTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFK 213

Query: 121 QMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            M  Q + + +  +    +R+C+ L     GE++HA + K G  +    G++L+  Y K 
Sbjct: 214 AMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKA 273

Query: 180 DGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            G  +    +  +   KD  S +++L+S  VQNG++E++F +FK M+    E D+ T+++
Sbjct: 274 -GLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVS 331

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ +   L +L+ GR  H   ++     + S+  AL+ MY+K   ++ ++ +F+ M  +D
Sbjct: 332 LIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ-MH 357
            V WN MI+ Y   G  KE+  L + M   GF  D  T I  +S+ S    +  GK   H
Sbjct: 392 IVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFH 451

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMI---KGYVTH 413
                 G   ++  +  ++D+      L+ A +   S+  +  V  W +++   + Y   
Sbjct: 452 VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNI 511

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           D   +  R+  E+  EG   +FV + NI  A
Sbjct: 512 DLGKKVSRMIQELGPEGTG-NFVLLSNIYSA 541



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 153/331 (46%), Gaps = 19/331 (5%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+R     + +T   A+ + S + +   G+ +H + +  G    + V  +L+DMY +C  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR--LFSEMKLEGVEVDFVTIINIL 442
           L  A  IF ++  + +V+W++M+ GY  H     A+   L  +M++  +  +  T++ +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 443 PACVNIGALEHVKYLHGYSMKLGL----NSLSSVN------TAIFISYAKCGCIEMAGEL 492
           P     GAL     +H Y ++  L    NS S +       TA+   YAKCG +  A  +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNA 551
           FD   + +++ +TW+++I  +      +Q F L+  M  Q        +    L AC + 
Sbjct: 181 FDA--MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             +  G  +   + +S G         S++++  +AG +D+A  L  +M  K D   +  
Sbjct: 239 DHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSA 296

Query: 612 LLSACKMHSETELAELTAEKL--ISMEPENA 640
           L+S    +   E A L  +K+   ++EP+ A
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAA 327


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/654 (30%), Positives = 359/654 (54%), Gaps = 23/654 (3%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           NL+L  NL+ +    G L+ ++Q+F+ +   + + + TI+          + L ++ +M 
Sbjct: 5   NLVLK-NLVKT----GHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMW 59

Query: 124 LQSMYPAEDTYPFVI----RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           ++   P     PF++    ++C   +    GE +H   VK  F +   VG ALV+ Y+K 
Sbjct: 60  VE---PGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKI 116

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
             G  +E  ++   FK++  R    W ++I+  V+ G ++++   F  M ++    D+ T
Sbjct: 117 --GKVDEGCIV---FKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYT 171

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
             + L++  +  +L  GR +HC  +   F     V   L +MY+K   L+    LF+ M+
Sbjct: 172 FSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMT 231

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            +D V W  +I +  Q G  + +++    M  +    + FT  A +S  +T+  IEWG+Q
Sbjct: 232 QRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQ 291

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +HA+V+R G    +SV NS++ MY +C  L+ A  +F  +  + ++SWS+MI GY     
Sbjct: 292 LHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGC 351

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA    S M+ EG   +     ++L  C N+  LE  K LH + + +GL   + V +A
Sbjct: 352 GEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSA 411

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+KCG I+ A ++FDE + +  +I++W +MI+ YA+HG   +   L+ ++ +  +R
Sbjct: 412 LINMYSKCGSIKEASKIFDEAEYN--NIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLR 469

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +TF+ +L AC +AGLV+ G   F  + + +   PS++HY  M++LL RAG +++A  
Sbjct: 470 PDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAES 529

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           +++ MPF+ D  VW  LL AC++H + +  +  AEK++ ++P  A  ++ L+N+YAA GK
Sbjct: 530 MIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGK 589

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           W   A++R  ++ +G+ K PG SWI+    V  F + D+SHP+ + IY +L +L
Sbjct: 590 WKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLL 643



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 126/262 (48%), Gaps = 4/262 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA ++I  GL  +L ++++++  Y+    L L+  VF  ++  + + + T++   ++
Sbjct: 290 EQLHA-HVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQ 348

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+       M  +   P E  +  V+  C  +     G+++HA V+ +G +    V
Sbjct: 349 GGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMV 408

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL+  Y KC    E  K   + ++ ++ S W ++I+   ++G S+++ +LFK +   G
Sbjct: 409 QSALINMYSKCGSIKEASKIFDEAEYNNIVS-WTAMINGYAEHGYSQEAIDLFKKLPKVG 467

Query: 229 AEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
              DS T I +L +      ++LG    + ++ V   C        ++ +  +   L DA
Sbjct: 468 LRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDA 527

Query: 288 KMLFDKMS-DKDRVVWNIMISA 308
           + +   M   +D VVW+ ++ A
Sbjct: 528 ESMIQSMPFQRDDVVWSTLLRA 549


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 221/671 (32%), Positives = 361/671 (53%), Gaps = 9/671 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYGTILKNLS 107
           +QIH  +++ + L  +  L + LID Y   GL   + +VF  I    N +L+  ++    
Sbjct: 190 KQIHG-FMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFG 248

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G  E +L +Y      S+     ++   + +CS   +   G +IH  VVK+G  +   
Sbjct: 249 GSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPY 308

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-WNSLISLAVQNGKSEKSFELFKLMRM 226
           V  +L+  Y KC  G   E   +     D +   WN++++   +N     + +LF  MR 
Sbjct: 309 VCTSLLSMYSKC--GMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQ 366

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           +    DS TL N++     L     G+ VH            ++ +ALL++YSK     D
Sbjct: 367 KSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPD 426

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS--GFRADLFTAIAAVSSI 344
           A ++F  M +KD V W  +IS   ++G  KE+L++   M       + D     +  ++ 
Sbjct: 427 AYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNAC 486

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + ++ + +G Q+H ++++ G    V V +SLID+Y +C     A K+F S+ T+ +V+W+
Sbjct: 487 AGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWN 546

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           SMI  Y  ++    ++ LF+ M  +G+  D V+I ++L A  +  +L   K LHGY+++L
Sbjct: 547 SMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRL 606

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G+ S + +  A+   Y KCG  + A  +F  +K+  K +ITWN MI  Y  HGD      
Sbjct: 607 GIPSDTHLKNALIDMYVKCGFSKYAENIF--KKMQHKSLITWNLMIYGYGSHGDCITALS 664

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+ +MK++   PD +TFL L++AC ++G VEEG+ IF+ MK+ YG EP+ EHYA+MV+LL
Sbjct: 665 LFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLL 724

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAG ++EA   +K MP + D+ +W  LLSA + H   EL  L+AEKL+ MEPE    YV
Sbjct: 725 GRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYV 784

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
            L N+Y  AG  N  AK+   ++++GL K PGCSWIE+    + F++   S P    I+ 
Sbjct: 785 QLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGSSSPMKAEIFN 844

Query: 705 ILGILELEIME 715
           +L  L+  +++
Sbjct: 845 VLNRLKSNMVD 855



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 142/601 (23%), Positives = 285/601 (47%), Gaps = 31/601 (5%)

Query: 24  NQTRPHMTATHSF-SLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLG 79
           + + P  T+  +F SLL  C    N  + + IH   ++L G   +  ++++L++ Y   G
Sbjct: 51  DGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVL-GWRYDPFIATSLVNMYVKCG 109

Query: 80  LLSLSQQVFNS-------ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
            L  + QVF+        +++ +  ++ +++    KF  +++ +  +++M +  + P   
Sbjct: 110 FLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAF 169

Query: 133 TYPFVIRSCSCLLDFI--SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           +   V+       +F    G++IH  +++   D+   +  AL++ Y K     +  +  +
Sbjct: 170 SLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFV 229

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           + + K     WN +I     +G  E S +L+ L +    +  S +    L +  + ++  
Sbjct: 230 EIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSG 289

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            GR +HC  V      D  V T+LLSMYSK   + +A+ +F  + DK   +WN M++AY 
Sbjct: 290 FGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYA 349

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           ++ +   +L+L   M +     D FT    +S  S +    +GK +HA + +       +
Sbjct: 350 ENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTST 409

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK--L 428
           + ++L+ +Y +C     A  +F S++ K +V+W S+I G   + +  EAL++F +MK   
Sbjct: 410 IESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD 469

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           + ++ D   + ++  AC  + AL     +HG  +K GL     V +++   Y+KCG  EM
Sbjct: 470 DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A ++F    + +++++ WNSMIS Y+++        L+  M    + PD ++   +L A 
Sbjct: 530 ALKVF--TSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAI 587

Query: 549 VNAGLVEEGRIIFKEMKESYGYE-----PSQEHYA-SMVNLLGRAGHMDEARELVKDMPF 602
            +   + +G       K  +GY      PS  H   +++++  + G    A  + K M  
Sbjct: 588 SSTASLLKG-------KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQH 640

Query: 603 K 603
           K
Sbjct: 641 K 641



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 12/297 (4%)

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
           S F   +FT  + + + S + N+ +GK +H +V+  G  Y   +  SL++MY +C  L+ 
Sbjct: 54  SPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDY 113

Query: 388 ARKIFD-------SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           A ++FD        V  + V  W+SMI GY    +  E +  F  M + GV  D  ++  
Sbjct: 114 AVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSI 173

Query: 441 ILPACVNIGAL--EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           ++      G    E  K +HG+ ++  L++ S + TA+   Y K G    A  +F E + 
Sbjct: 174 VVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIE- 232

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           D  +++ WN MI  +   G       LY   K + V+    +F G L AC  +     GR
Sbjct: 233 DKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGR 292

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            I  ++ +  G         S++++  + G + EA E V          +W  +++A
Sbjct: 293 QIHCDVVK-MGLHNDPYVCTSLLSMYSKCGMVGEA-ETVFSCVVDKRLEIWNAMVAA 347


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 218/649 (33%), Positives = 344/649 (53%), Gaps = 74/649 (11%)

Query: 132 DTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
           D+ PF  ++ SC      I   +IHA+++K  F S   + + LV+ Y KC G FE+ + +
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKC-GYFEDARKV 76

Query: 190 IQR-----------------KFKDL--------------KSRWNSLISLAVQNGKSEKSF 218
             R                 KF  L              +  WN+++S   Q+ + E++ 
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
             F  M  E    +  +  + L +   L  L +G  +H +   S +  D+ + +AL+ MY
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMY 196

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           SK   +  A+  FD M+ ++ V WN +I+ Y Q+G   ++LE+ + M+ +G   D  T  
Sbjct: 197 SKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLA 256

Query: 339 AAVSSISTMKNIEWGKQMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFD---- 393
           + VS+ ++   I  G Q+HA V+ R+     + + N+L+DMY +C  +N AR +FD    
Sbjct: 257 SVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 394 -----------------SVKT----------KTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
                            SVK           K VVSW+++I GY  + ++ EA+RLF  +
Sbjct: 317 RNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 427 KLEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGYSMKLGLNSLSSVNTAIFISY 480
           K E +     T  N+L AC N+  L+     H + L HG+  + G  S   V  ++   Y
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMY 436

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            KCG +E    +F  E++  +D+++WN+MI  YA++G  +   +++ +M  S  +PD +T
Sbjct: 437 MKCGMVEDGCLVF--ERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVT 494

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            +G+L+AC +AGLVEEGR  F  M+   G  P ++H+  MV+LLGRAG +DEA +L++ M
Sbjct: 495 MIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTM 554

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660
           P +PD  VWG LL+ACK+H   EL +  AEKL+ ++P N+G YVLLSN+YA  G+W  V 
Sbjct: 555 PMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 661 KMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           ++R  +R RG+ K PGCSWIEI   VH F   D+ HP    I+ +L  L
Sbjct: 615 RVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFL 663



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 256/547 (46%), Gaps = 87/547 (15%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IHAR II       + + + L+D+Y   G    +++VF+ +   N+  Y  +L  L+K
Sbjct: 39  RRIHAR-IIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 109 FGEYEKTLLVYKQM---------ALQSMYPAEDTYPFVIR-------------------- 139
           FG+ ++   V+K M         A+ S +   D +   +R                    
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 140 --SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKF 194
             +C+ L D   G +IHA + K  +     +G ALV+ Y KC        G++   QR F
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKC--------GVVACAQRAF 209

Query: 195 KDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
             +  R    WNSLI+   QNG + K+ E+F +M   G E D  TL +++ +     ++ 
Sbjct: 210 DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269

Query: 251 LGRIVHCVAVVSD-FCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-------------- 295
            G  +H   V  D +  DL +  AL+ MY+K   + +A+++FD+M               
Sbjct: 270 EGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGY 329

Query: 296 -----------------DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
                            +K+ V WN +I+ Y Q+G  +E++ L + + R       +T  
Sbjct: 330 ARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQ------VSVHNSLIDMYCECEDLNCARKIF 392
             +++ + + +++ G+Q H  +L++G  +Q      + V NSLIDMY +C  +     +F
Sbjct: 390 NLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVF 449

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + +  + VVSW++MI GY  +     AL +F +M + G + D VT+I +L AC + G +E
Sbjct: 450 ERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVE 509

Query: 453 H-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              +Y H    +LGL  +    T +     + GC++ A +L     +   +++ W S+++
Sbjct: 510 EGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVV-WGSLLA 568

Query: 512 AYAKHGD 518
           A   HG+
Sbjct: 569 ACKVHGN 575



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 31/152 (20%)

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           +D      +L +CV   +    + +H   +K   +S   +   +  +Y KCG  E A ++
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 493 FDE-----------------------------EKIDSKDIITWNSMISAYAKHGDWSQCF 523
           FD                              + +   D  +WN+M+S +A+H  + +  
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           + +  M   D   +  +F   L+AC  AGL +
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSAC--AGLTD 166


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/679 (31%), Positives = 376/679 (55%), Gaps = 18/679 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++H R II  G   + ++++ L+  Y  LG L  +++VF  +   + + + +I+ ++ +
Sbjct: 119 QRVHGR-IIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVE 177

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE  + L  ++ M  +   P       V+ +C  L      +  H  ++K G ++   V
Sbjct: 178 NGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFV 237

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L+  Y KC G   + + + +       S W ++IS     G  +++  LF  M+   
Sbjct: 238 DSSLIFMYAKC-GSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTE 296

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKLASLEDA 287
            E +S T+  +LRS   L  L  G+ VHCV + +D   +L  +   LL +Y+  A  +  
Sbjct: 297 VEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLC 356

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +  ++  +   VWN +IS Y Q G  KE+++L + M + GF  D F+  +++S+    
Sbjct: 357 EKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNE 416

Query: 348 KNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
             ++ G Q+H +V++     +Y   V NSLI+MY +C  ++ A  IFD ++ K VV+W+S
Sbjct: 417 GELQLGLQIHGHVIKRPFMDEY---VFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNS 473

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI G   +  S +A+ LF  M +   E+  V  ++++ AC ++G LE  K++H   +  G
Sbjct: 474 MISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCG 533

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           +     + TA+   YAKCG ++ A  +FD   +  + +++W+S+IS+Y  HG  S+   L
Sbjct: 534 VRKCIFIETALVDMYAKCGDLQTAQRVFD--NMSERSVVSWSSLISSYGVHGQISEVIFL 591

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +++M +S ++P+ +T + +L+AC +AG V+EG + F  M++ +G EP +EH+  +V+LL 
Sbjct: 592 FSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRD-FGIEPKREHFVCIVDLLS 650

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +DEA E++K MPF P A +WG LL+ C++H   ++A+    +L +++ ++ G+Y L
Sbjct: 651 RAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTL 710

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNIYAA G+WN   ++R+ ++  GLKK P  S +E+GK  + F A D S+PQ    Y+ 
Sbjct: 711 LSNIYAAGGEWNEFGEVRSMMKGTGLKKVPAYSVVELGKKAYRFGAGDASYPQLKYTYST 770

Query: 706 LGILELEIMEGRRESSEEL 724
                      +R S EE+
Sbjct: 771 FN-------NAQRSSREEV 782



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 166/629 (26%), Positives = 314/629 (49%), Gaps = 13/629 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L Q+HA +II+  LH + + S+ LI+SY+ LG L  S  VF +  SP+S ++G +LK+  
Sbjct: 17  LAQLHA-HIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHV 75

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G Y++ + +Y QM  Q +     T+P V+R+CS   D   G+++H +++K GFD    
Sbjct: 76  WNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPV 135

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V  AL+  Y +        K   +   +DL S  +S+IS  V+NG+  +  + F+ M  E
Sbjct: 136 VNTALLSVYGELGYLDSARKVFGEMPLRDLVSW-SSIISSVVENGEINEGLDAFRCMVSE 194

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   DS  ++ ++ +  EL  L L +  H   +      D  V+++L+ MY+K  SL  A
Sbjct: 195 GGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSA 254

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           +++F+ ++ +    W  MIS+Y   G+ KE+L L + M ++    +  T    + S + +
Sbjct: 255 EIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNL 314

Query: 348 KNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
             +  GK +H  V++N  D  +  +  +L+++Y      +   KI   +  + +  W+++
Sbjct: 315 SLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTL 374

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  Y       E + LF  M+ +G   D  ++ + L A  N G L+    +HG+ +K   
Sbjct: 375 ISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF 434

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                 N+ I + Y+KCG +++A  +FD+  ++ K ++TWNSMIS  +++G  ++   L+
Sbjct: 435 MDEYVFNSLINM-YSKCGYVDLAYMIFDQ--MEPKGVVTWNSMISGLSQNGYSTKAISLF 491

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M  +      + F+ ++ AC + G +E+G+ I  ++  + G         ++V++  +
Sbjct: 492 DLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLI-TCGVRKCIFIETALVDMYAK 550

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
            G +  A+ +  +M  +     W  L+S+  +H +         K+  +E     N V +
Sbjct: 551 CGDLQTAQRVFDNMS-ERSVVSWSSLISSYGVHGQISEVIFLFSKM--LESGIKPNDVTV 607

Query: 647 SNIYAAAGKWNGVAKMRTF---LRDRGLK 672
            N+ +A      V +   F   +RD G++
Sbjct: 608 MNVLSACSHAGCVKEGMLFFNSMRDFGIE 636


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 228/702 (32%), Positives = 356/702 (50%), Gaps = 67/702 (9%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           L + ++ SY   G    +  V   +T   ++ +  +++   K G  +  + V  +M    
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
                 T P V+++C  L  +  G   H  +   GF+S   + +ALV  Y +C G  E E
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-GSLE-E 170

Query: 187 KGMI-----QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM------EGAEFDSGT 235
             MI     QR   D+ S WNS++S  V++  +  + +LF  M +           D  +
Sbjct: 171 ASMIFDEITQRGIDDVIS-WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 229

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           ++N+L +   LK++   + VH  A+ +    D+ V  AL+  Y+K   +E+A  +F+ M 
Sbjct: 230 IVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMME 289

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLM-------------------------C------ 324
            KD V WN M++ Y QSG  K + EL                           C      
Sbjct: 290 FKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALN 349

Query: 325 ----MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN----------GSDYQVS 370
               M+ SG   +  T I+ +S+ +++     G ++HA  L+N          G D  + 
Sbjct: 350 VFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLM 409

Query: 371 VHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           V+N+LIDMY +C     AR IFD +  + + VV+W+ MI G+  +  S +AL+LF EM  
Sbjct: 410 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS 469

Query: 429 E--GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--VNTAIFISYAKCG 484
           E  GV  +  TI  IL AC ++ A+   K +H Y ++      S+  V   +   Y+KCG
Sbjct: 470 EPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCG 529

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            ++ A  +FD   +  K  I+W SM++ Y  HG  S+   ++ +M+++   PD ITFL +
Sbjct: 530 DVDTARHVFDS--MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 587

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC + G+V++G   F  M   YG  P  EHYA  ++LL R G +D+A + VKDMP +P
Sbjct: 588 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 647

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
            A VW  LLSAC++HS  ELAE    KL+ M  EN G+Y L+SNIYA AG+W  VA++R 
Sbjct: 648 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 707

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            ++  G+KK PGCSW++  K    F+  D+SHP +  IY +L
Sbjct: 708 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALL 749



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/517 (26%), Positives = 244/517 (47%), Gaps = 59/517 (11%)

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           F S   +G  +V  Y+ C G  +    +++R        WN LI   ++ G+ + +  + 
Sbjct: 47  FISPRSLGTGVVASYLAC-GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 105

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M   G   D  TL ++L++  EL S   G   H +   + F  ++ +  AL++MYS+ 
Sbjct: 106 CRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 165

Query: 282 ASLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMV------RSGFRA 332
            SLE+A M+FD+++ +   D + WN ++SA+ +S     +L+L   M        +  R+
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 225

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D+ + +  + +  ++K +   K++H N +RNG+   V V N+LID Y +C  +  A K+F
Sbjct: 226 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 285

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF----------------- 435
           + ++ K VVSW++M+ GY        A  LF  M+ E + +D                  
Sbjct: 286 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 345

Query: 436 ------------------VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS------ 471
                             VTII++L AC ++GA      +H YS+K  L +L +      
Sbjct: 346 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 405

Query: 472 ----VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               V  A+   Y+KC   + A  +FD+  ++ ++++TW  MI  +A++GD +   KL+ 
Sbjct: 406 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 465

Query: 528 QM--KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVNLL 584
           +M  +   V P+  T   +L AC +   +  G+ I   +   + Y+ S    A+ ++N+ 
Sbjct: 466 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMY 525

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            + G +D AR +   M  K  A  W  +++   MH  
Sbjct: 526 SKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHGR 561


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 219/706 (31%), Positives = 373/706 (52%), Gaps = 46/706 (6%)

Query: 44  NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
           N  HL   H   I+  G + N   S+  ++++   G L  + QVF+ + + N++    ++
Sbjct: 25  NSNHLIDAH---IVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMI 81

Query: 104 KNLSKFGEYEKTLLVYKQMA--------------LQSMYPAEDTYPFV-IRSCSCLLDFI 148
               KFG+  K   ++  M               LQS    E    +  +R      D++
Sbjct: 82  SGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYV 141

Query: 149 S--------GE--------KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           +        GE        +IH  V+KLG++    V ++LV+ Y K    +     +  +
Sbjct: 142 TLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY-----LASQ 196

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
            FK + ++    +NSL++     G +E++ ELF  +   G +    T   LL + V L  
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDD 256

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
            + G+ VH   + ++F  ++ V  ALL  YSK   +++   LF +M + D + +N++I++
Sbjct: 257 TKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITS 316

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y  +G  KES +L   +  + F    F     +S  ++  N+  G+Q+H   +  G++++
Sbjct: 317 YAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFE 376

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             V N+L+DMY +C     A+KIFD++  K+ V W++MI  YV   +  E + +FS+M+ 
Sbjct: 377 SRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRR 436

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            GV  D  T  +IL AC N+ ++   + LH   ++ G  S     +A+  +YAKCGC+  
Sbjct: 437 TGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A + F E  +  ++ ++WN++ISAYA++G+       + QM QS  +PD ++FL +L+AC
Sbjct: 497 AIKSFGE--MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSAC 554

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            + G VEE    F  M + Y   P +EHY SMV++L R G  DEA +L+ +MPF+P   +
Sbjct: 555 SHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIM 614

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           W  +L++C++H   ELA+  A++L +ME   +A  Y+ +SNIYA AG+W+ VAK++  +R
Sbjct: 615 WSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMR 674

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           DRG++K P  SW+EI    H F A D+SHP+   I   +  L  E+
Sbjct: 675 DRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEM 720



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 179/409 (43%), Gaps = 37/409 (9%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L  S     SL    ++    V + F  +   +   ++ + +   L  A  +FD+M  K+
Sbjct: 14  LRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKN 73

Query: 299 RVVWNIMISA-------------------------------YYQSGFPKESLELLMCMVR 327
            +  N+MIS                                Y QS   KE+  L   M R
Sbjct: 74  TISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR 133

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T +  +S    ++      Q+H +V++ G +Y + V NSL+D YC+   L  
Sbjct: 134 GGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYL 193

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A ++F  +  K  V+++S++ GY     + EA+ LF E+   G++    T   +L A V 
Sbjct: 194 ASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVG 253

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +   +  + +HG+ +K        V  A+   Y+K   ++  G+LF E  +   D I++N
Sbjct: 254 LDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXE--MPELDGISYN 311

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF-KEMKE 566
            +I++YA +G + + F L+ +++ +        F  LL+   ++  +  GR I  + +  
Sbjct: 312 VVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITV 371

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              +E   E+  ++V++  +     EA+++  ++  K     W  ++SA
Sbjct: 372 GANFESRVEN--ALVDMYAKCNGDKEAQKIFDNIACKSTVP-WTAMISA 417


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/679 (31%), Positives = 376/679 (55%), Gaps = 18/679 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++H R II  G   + ++++ L+  Y  LG L  +++VF  +   + + + +I+ ++ +
Sbjct: 119 QRVHGR-IIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVE 177

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE  + L  ++ M  +   P       V+ +C  L      +  H  ++K G ++   V
Sbjct: 178 NGEINEGLDAFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFV 237

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L+  Y KC G   + + + +       S W ++IS     G  +++  LF  M+   
Sbjct: 238 DSSLIFMYAKC-GSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTE 296

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKLASLEDA 287
            E +S T+  +LRS   L  L  G+ VHCV + +D   +L  +   LL +Y+  A  +  
Sbjct: 297 VEPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLC 356

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +  ++  +   VWN +IS Y Q G  KE+++L + M + GF  D F+  +++S+    
Sbjct: 357 EKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNE 416

Query: 348 KNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
             ++ G Q+H +V++     +Y   V NSLI+MY +C  ++ A  IFD ++ K VV+W+S
Sbjct: 417 GELQLGLQIHGHVIKRPFMDEY---VFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNS 473

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI G   +  S +A+ LF  M +   E+  V  ++++ AC ++G LE  K++H   +  G
Sbjct: 474 MISGLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCG 533

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           +     + TA+   YAKCG ++ A  +FD   +  + +++W+S+IS+Y  HG  S+   L
Sbjct: 534 VRKCIFIETALVDMYAKCGDLQTAQRVFD--NMSERSVVSWSSLISSYGVHGQISEVIFL 591

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +++M +S ++P+ +T + +L+AC +AG V+EG + F  M++ +G EP +EH+  +V+LL 
Sbjct: 592 FSKMLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRD-FGIEPKREHFVCIVDLLS 650

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +DEA E++K MPF P A +WG LL+ C++H   ++A+    +L +++ ++ G+Y L
Sbjct: 651 RAGDLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTL 710

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNIYAA G+WN   ++R+ ++  GLKK P  S +E+GK  + F A D S+PQ    Y+ 
Sbjct: 711 LSNIYAAGGEWNEFGEVRSMMKGTGLKKVPAYSVVELGKKAYRFGAGDASYPQLKYTYST 770

Query: 706 LGILELEIMEGRRESSEEL 724
                      +R S EE+
Sbjct: 771 FN-------NAQRSSREEV 782



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 166/631 (26%), Positives = 315/631 (49%), Gaps = 13/631 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           + L Q+HA +II+  LH + + S+ LI+SY+ LG L  S  VF +  SP+S ++G +LK+
Sbjct: 15  RQLAQLHA-HIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKS 73

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
               G Y++ + +Y QM  Q +     T+P V+R+CS   D   G+++H +++K GFD  
Sbjct: 74  HVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMD 133

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V  AL+  Y +        K   +   +DL S  +S+IS  V+NG+  +  + F+ M 
Sbjct: 134 PVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSW-SSIISSVVENGEINEGLDAFRCMV 192

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            EG   DS  ++ ++ +  EL  L L +  H   +      D  V+++L+ MY+K  SL 
Sbjct: 193 SEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLR 252

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A+++F+ ++ +    W  MIS+Y   G+ KE+L L + M ++    +  T    + S +
Sbjct: 253 SAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCT 312

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
            +  +  GK +H  V++N  D  +  +  +L+++Y      +   KI   +  + +  W+
Sbjct: 313 NLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWN 372

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I  Y       E + LF  M+ +G   D  ++ + L A  N G L+    +HG+ +K 
Sbjct: 373 TLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKR 432

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
                   N+ I + Y+KCG +++A  +FD+  ++ K ++TWNSMIS  +++G  ++   
Sbjct: 433 PFMDEYVFNSLINM-YSKCGYVDLAYMIFDQ--MEPKGVVTWNSMISGLSQNGYSTKAIS 489

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+  M  +      + F+ ++ AC + G +E+G+ I  ++  + G         ++V++ 
Sbjct: 490 LFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLI-TCGVRKCIFIETALVDMY 548

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
            + G +  A+ +  +M  +     W  L+S+  +H +         K+  +E     N V
Sbjct: 549 AKCGDLQTAQRVFDNMSER-SVVSWSSLISSYGVHGQISEVIFLFSKM--LESGIKPNDV 605

Query: 645 LLSNIYAAAGKWNGVAKMRTF---LRDRGLK 672
            + N+ +A      V +   F   +RD G++
Sbjct: 606 TVMNVLSACSHAGCVKEGMLFFNSMRDFGIE 636


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 235/798 (29%), Positives = 387/798 (48%), Gaps = 113/798 (14%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
            +P  T+ ++ S+L+ C+ P+  +Q+HA + I  G   +  + + L+  YA  GLL  + 
Sbjct: 57  NKPLNTSKYA-SVLDSCKCPKLGKQVHA-HTIKTGFDADGFIDTKLLQMYARCGLLKDAD 114

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            +F ++   N   +  IL      G +E+  L+++ +    +      +P V ++CS L 
Sbjct: 115 FLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLG 174

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
               G ++H  V+K  F     V +AL++ Y KC G  ++ K ++ +  +     WNS+I
Sbjct: 175 SVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKC-GSLDDAKKVLVKMPERDSVTWNSVI 233

Query: 206 SLAV------------------------------------QNGKSEKSFELFKLMRMEGA 229
           +                                       QNG  E++ E+   M++EG 
Sbjct: 234 TACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGL 293

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             ++ TL  +L +   L+ L+LG+ +H      DF  +  V  AL+ +Y +   +  A  
Sbjct: 294 VPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAK 353

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-------------------VRS-- 328
           +F K S K+ +  N MI  Y +SG   ++ EL  CM                   VR+  
Sbjct: 354 IFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFM 413

Query: 329 ---------------GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
                          G   D FT  + +++ +   ++  GK++HA  +  G      V  
Sbjct: 414 FDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGG 473

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS------LEALR------ 421
           +L++MY +C+DL  A+  FD V  K V +W+++I GY   +Q       LE ++      
Sbjct: 474 ALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHP 533

Query: 422 -----------------------LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
                                  LFSEM++  +  D  T+  ILPAC  +  LE  K  H
Sbjct: 534 NIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAH 593

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +S+K G ++   +  A+   YAKCG ++ A   +D  +I + ++++ N+M++A A HG 
Sbjct: 594 AHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYD--RISNPNLVSHNAMLTACAMHGH 651

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
             +   L+  M      PD +TFL +L++CV+ G VE G   F  M   Y  +P+ +HY 
Sbjct: 652 GEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMG-YYNVKPTLKHYT 710

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
           SMV+LL R+G + EA EL+K MP + D+ +WG LL  C  H   EL E+ AE+LI +EP 
Sbjct: 711 SMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPN 770

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           N+GNYVLL+N++A A +W  +A++R  ++DRG+ K+PGCSWIE    +H F A D+SH +
Sbjct: 771 NSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSFLACDRSHKR 830

Query: 699 ADAIYTILGILELEIMEG 716
           A+ IY  L  L L +  G
Sbjct: 831 AEEIYATLDYLALHMKTG 848


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 355/667 (53%), Gaps = 56/667 (8%)

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
           +S     +  +++     G  E  L +Y++M      P   T+PFV+++C  +  F  G 
Sbjct: 106 SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 165

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG----MIQRKFKDLKSRWNSLISL 207
            +HA V   GF+    VG+ LV  Y +C G +EN +     M +R   DL S WNS+++ 
Sbjct: 166 SVHAVVFASGFEWNVFVGNGLVSMYGRC-GAWENARQVFDEMRERGVGDLVS-WNSIVAA 223

Query: 208 AVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            +Q G S ++ ++F+ M  + G   D+ +L+N+L +   + +   G+ VH  A+ S   +
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG--------FPK-- 316
           D+ V  A++ MY+K   +E+A  +F++M  KD V WN M++ Y Q G        F K  
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 343

Query: 317 -------------------------ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
                                    E+L++   M+  G   ++ T ++ +S  ++   + 
Sbjct: 344 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLL 403

Query: 352 WGKQMHANVLR-------NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVS 402
            GK+ H + ++       N     + V N+LIDMY +C+    AR +FD +  K ++VV+
Sbjct: 404 HGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVT 463

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVDFVTIINILPACVNIGALEHVKYLHGY 460
           W+ +I G   H ++ EAL LFS+M      V  +  TI   L AC  +GAL   + +H Y
Sbjct: 464 WTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAY 523

Query: 461 SMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
            ++    S +  V   +   Y+K G ++ A  +FD   +  ++ ++W S+++ Y  HG  
Sbjct: 524 VLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFD--NMHQRNGVSWTSLMTGYGMHGRG 581

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +  +++ +M++  + PD +TF+ +L AC ++G+V++G   F  M + +G  P  EHYA 
Sbjct: 582 EEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYAC 641

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           MV+LL RAG +DEA EL++ MP KP   VW  LLSAC++++  EL E  A +L+ +E  N
Sbjct: 642 MVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGN 701

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
            G+Y LLSNIYA A  W  VA++R  +++ G+KK PGCSW++  K    F+A D SHP +
Sbjct: 702 DGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMS 761

Query: 700 DAIYTIL 706
             IY +L
Sbjct: 762 QQIYDLL 768



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 10/247 (4%)

Query: 375 LIDMY----CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           +I MY       + L+  R++  S  + TV  W+ +I+  V      + L+L+  M+  G
Sbjct: 83  IISMYLTFNSPAKALSVLRRLHPS--SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 140

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
              D  T   +L AC  I +      +H      G      V   +   Y +CG  E A 
Sbjct: 141 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 200

Query: 491 ELFDE-EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTAC 548
           ++FDE  +    D+++WNS+++AY + GD  +  K++ +M +   +RPD ++ + +L AC
Sbjct: 201 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 260

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            + G    G+ +      S  +E      A +V++  + G M+EA ++ + M  K D   
Sbjct: 261 ASVGAWSRGKQVHGYALRSGLFEDVFVGNA-VVDMYAKCGMMEEANKVFERMKVK-DVVS 318

Query: 609 WGPLLSA 615
           W  +++ 
Sbjct: 319 WNAMVTG 325



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 88/205 (42%), Gaps = 36/205 (17%)

Query: 49  QQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +QIHA Y++ +     ++  +N LID Y+  G +  ++ VF+++   N + + +++    
Sbjct: 518 RQIHA-YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 576

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G  E+ L ++ +M    + P   T+  V+ +CS           H+ +V  G + F+ 
Sbjct: 577 MHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACS-----------HSGMVDQGINYFN- 624

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
                         G   + G++          +  ++ L  + G+ +++ EL + M M+
Sbjct: 625 --------------GMNKDFGVVPG-----AEHYACMVDLLSRAGRLDEAMELIRGMPMK 665

Query: 228 GAEFDSGTLINLLRSTVELKSLELG 252
                    + LL +     ++ELG
Sbjct: 666 PT---PAVWVALLSACRVYANVELG 687


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 206/677 (30%), Positives = 369/677 (54%), Gaps = 13/677 (1%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNL----ILSSNLIDSYANLGLLSLSQQVFNSIT 92
           SL+  C + + L Q   R I  H L+ N     IL+++++  Y   G L  +++VF+ + 
Sbjct: 72  SLICACSSSRSLAQ--GRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 129

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + Y +++   S+ G+  + + +Y +M  + + P +  +  +I++C+   D   G++
Sbjct: 130 ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +HAQV+KL   S     +AL+  Y++ +   +  +       KDL S W+S+I+   Q G
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLIS-WSSIIAGFSQLG 248

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLI--NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
              ++    K M   G  F     I  + L++   L   + G  +H + + S+   +   
Sbjct: 249 FEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIA 307

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L  MY++   L  A+ +FD++   D   WN++I+    +G+  E++ +   M  SGF
Sbjct: 308 GCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGF 367

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D  +  + + + +    +  G Q+H+ +++ G    ++V NSL+ MY  C DL C   
Sbjct: 368 IPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFN 427

Query: 391 IFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           +F+  +     VSW++++   + H+Q +E LRLF  M +   E D +T+ N+L  CV I 
Sbjct: 428 LFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEIS 487

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L+    +H YS+K GL     +   +   YAKCG +  A  +FD   +D++D+++W+++
Sbjct: 488 SLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFD--SMDNRDVVSWSTL 545

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I  YA+ G   +   L+ +MK + + P+ +TF+G+LTAC + GLVEEG  ++  M+  +G
Sbjct: 546 IVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHG 605

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P++EH + +V+LL RAG ++EA   + +M  +PD  VW  LLSACK      LA+  A
Sbjct: 606 ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAA 665

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           E ++ ++P N+  +VLL +++A++G W   A +R+ ++   +KK PG SWIEI   +H F
Sbjct: 666 ENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIF 725

Query: 690 WAADQSHPQADAIYTIL 706
           +A D  HP+ D IYT+L
Sbjct: 726 FAEDIFHPERDDIYTVL 742



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 224/482 (46%), Gaps = 5/482 (1%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  +I +CS       G KIH  ++         + + ++  Y KC G   + + +   
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKC-GSLRDAREVFDF 127

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +     + S+I+   QNG+  ++  L+  M  E    D     +++++      + LG
Sbjct: 128 MPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLG 187

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H   +  +    L    AL++MY +   + DA  +F  +  KD + W+ +I+ + Q 
Sbjct: 188 KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQL 247

Query: 313 GFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           GF  E+L  L  M+  G F  + +   +++ + S++   ++G Q+H   +++        
Sbjct: 248 GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIA 307

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             SL DMY  C  LN AR++FD ++     SW+ +I G   +  + EA+ +FS+M+  G 
Sbjct: 308 GCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGF 367

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
             D +++ ++L A     AL     +H Y +K G  +  +V  ++   Y  C  +     
Sbjct: 368 IPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFN 427

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           LF++ + ++ D ++WN++++A  +H    +  +L+  M  S+  PD IT   LL  CV  
Sbjct: 428 LFEDFR-NNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEI 486

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             ++ G  +     ++ G  P Q     ++++  + G + +AR +   M  + D   W  
Sbjct: 487 SSLKLGSQVHCYSLKT-GLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNR-DVVSWST 544

Query: 612 LL 613
           L+
Sbjct: 545 LI 546



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 198/408 (48%), Gaps = 6/408 (1%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T I+L+ +    +SL  GR +H   + S+   D  +N  +LSMY K  SL DA+ +FD M
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            +++ V +  +I+ Y Q+G   E++ L + M++     D F   + + + ++  ++  GK
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+HA V++  S   +   N+LI MY     ++ A ++F  +  K ++SWSS+I G+    
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248

Query: 415 QSLEALRLFSEMKLEGV-EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
              EAL    EM   GV   +     + L AC ++   ++   +HG  +K  L   +   
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            ++   YA+CG +  A  +FD+  I+  D  +WN +I+  A +G   +   +++QM+ S 
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQ--IERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG 366

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
             PD I+   LL A      + +G  I   + + +G+        S++ +      +   
Sbjct: 367 FIPDAISLRSLLCAQTKPMALSQGMQIHSYIIK-WGFLADLTVCNSLLTMYTFCSDLYCC 425

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSE-TELAELTAEKLIS-MEPEN 639
             L +D     D+  W  +L+AC  H +  E+  L    L+S  EP++
Sbjct: 426 FNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDH 473



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 156/323 (48%), Gaps = 10/323 (3%)

Query: 297 KDRVVWNIMISAYYQSGFPKESLELL-MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           K   + N  I++  +S F +E+LE        S F+  L T I+ + + S+ +++  G++
Sbjct: 29  KTEELMNDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRK 88

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H ++L +   Y   ++N ++ MY +C  L  AR++FD +  + +VS++S+I GY  + Q
Sbjct: 89  IHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQ 148

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA+RL+ +M  E +  D     +I+ AC +   +   K LH   +KL  +S      A
Sbjct: 149 GAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNA 208

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV- 534
           +   Y +   +  A  +F    I  KD+I+W+S+I+ +++ G   +      +M    V 
Sbjct: 209 LIAMYVRFNQMSDASRVF--YGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVF 266

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA--SMVNLLGRAGHMDE 592
            P+   F   L AC +    + G  I     +S   E +    A  S+ ++  R G ++ 
Sbjct: 267 HPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKS---ELAGNAIAGCSLCDMYARCGFLNS 323

Query: 593 ARELVKDMPFKPDARVWGPLLSA 615
           AR  V D   +PD   W  +++ 
Sbjct: 324 ARR-VFDQIERPDTASWNVIIAG 345


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/537 (35%), Positives = 294/537 (54%), Gaps = 34/537 (6%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV- 260
           N L+    +    E +  L+  +R  G   D  +   LL++  +L +L LG  +H +A  
Sbjct: 84  NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASK 143

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D  + +AL++MY+    + DA+ LFDKMS +D V WNIMI  Y Q+      L+
Sbjct: 144 FGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLK 203

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M  SG   D       +S+ +   N+ +GK +H  +  NG      +  SL++MY 
Sbjct: 204 LYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYA 263

Query: 381 ECEDLNCARKIFDSVKTK-------------------------------TVVSWSSMIKG 409
            C  ++ AR+++D + +K                                +V WS+MI G
Sbjct: 264 NCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISG 323

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y    Q LEAL+LF+EM+   +  D +T+++++ AC N+GAL   K++H Y+ K G    
Sbjct: 324 YAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRT 383

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             +N A+   YAKCG +  A E+F  E +  K++I+W+SMI+A+A HGD      L+ +M
Sbjct: 384 LPINNALIDMYAKCGNLVKAREVF--ENMPRKNVISWSSMINAFAMHGDADSAIALFHRM 441

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           K+ ++ P+ +TF+G+L AC +AGLVEEG+  F  M   +   P +EHY  MV+L  RA H
Sbjct: 442 KEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANH 501

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + +A EL++ MPF P+  +WG L+SAC+ H E EL E  A +L+ +EP++ G  V+LSNI
Sbjct: 502 LRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNI 561

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           YA   +W+ V  +R  ++ +G+ K   CS IE+   VH F  AD+ H Q+D IY  L
Sbjct: 562 YAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKL 618



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 232/520 (44%), Gaps = 43/520 (8%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQN------LILSSNLIDSYANLGLLSLSQQVFNSI 91
           LL  C+  +H++QIHA+  IL     N       ++         +   L  +  +F+ I
Sbjct: 18  LLASCKTLRHVKQIHAQ--ILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHI 75

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
            +P +     +L+  S+    E TL +Y  +          ++P ++++ S L     G 
Sbjct: 76  PNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGL 135

Query: 152 KIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           +IH    K GF   D  +  AL+  Y  C G   + + +  +        WN +I    Q
Sbjct: 136 EIHGLASKFGFFHADPFIQSALIAMYAAC-GRIMDARFLFDKMSHRDVVTWNIMIDGYSQ 194

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           N   +   +L++ M+  G E D+  L  +L +     +L  G+ +H     + F     +
Sbjct: 195 NAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHI 254

Query: 271 NTALLSM-------------------------------YSKLASLEDAKMLFDKMSDKDR 299
            T+L++M                               Y+KL  ++DA+ +FD+M +KD 
Sbjct: 255 QTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDL 314

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V W+ MIS Y +S  P E+L+L   M R     D  T ++ +S+ + +  +   K +H  
Sbjct: 315 VCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTY 374

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
             +NG    + ++N+LIDMY +C +L  AR++F+++  K V+SWSSMI  +  H  +  A
Sbjct: 375 ADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSA 434

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + LF  MK + +E + VT I +L AC + G +E  +      +     S    +    + 
Sbjct: 435 IALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVD 494

Query: 480 -YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            Y +   +  A EL +       ++I W S++SA   HG+
Sbjct: 495 LYCRANHLRKAMELIETMPF-PPNVIIWGSLMSACQNHGE 533



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 185/374 (49%), Gaps = 32/374 (8%)

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
           ++L+ A  LF  + +      N ++  + +   P+ +L L + + R+GF  D F+    +
Sbjct: 63  SALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLL 122

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
            ++S +  +  G ++H    + G  +    + ++LI MY  C  +  AR +FD +  + V
Sbjct: 123 KAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDV 182

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+W+ MI GY  +      L+L+ EMK  G E D + +  +L AC + G L + K +H +
Sbjct: 183 VTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF 242

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE------------------------- 495
               G    S + T++   YA CG + +A E++D+                         
Sbjct: 243 IKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDA 302

Query: 496 ----EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
               +++  KD++ W++MIS YA+     +  +L+ +M++  + PD IT L +++AC N 
Sbjct: 303 RFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANV 362

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G + + + I     ++ G+  +     +++++  + G++ +ARE+ ++MP K +   W  
Sbjct: 363 GALVQAKWIHTYADKN-GFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-NVISWSS 420

Query: 612 LLSACKMHSETELA 625
           +++A  MH + + A
Sbjct: 421 MINAFAMHGDADSA 434



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 9/266 (3%)

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED-----LNCARKIFDSVKTK 398
           +++ K +   KQ+HA +LR+  D    +   L+   C         L+ A  +F  +   
Sbjct: 19  LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNP 78

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
                + +++ +         L L+  ++  G  +D  +   +L A   + AL     +H
Sbjct: 79  PTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIH 138

Query: 459 GYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           G + K G  ++   + +A+   YA CG I  A  LFD  K+  +D++TWN MI  Y+++ 
Sbjct: 139 GLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFD--KMSHRDVVTWNIMIDGYSQNA 196

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
            +    KLY +MK S   PD I    +L+AC +AG +  G+ I + +K++ G+       
Sbjct: 197 HYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDN-GFRVGSHIQ 255

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFK 603
            S+VN+    G M  ARE+   +P K
Sbjct: 256 TSLVNMYANCGAMHLAREVYDQLPSK 281


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 205/627 (32%), Positives = 328/627 (52%), Gaps = 46/627 (7%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC----DGGFENEKGMIQR 192
           ++ +C+       G+++HAQV+ LG D    +   LV FY       D  F  E      
Sbjct: 87  LLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLD 146

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
                   WN LIS  V+NG   ++  ++K M  +  E D  T  ++L++  E      G
Sbjct: 147 PL-----HWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSG 201

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             VH     S     L V+ AL+SMY +   LE A+ LFD M  +D V WN +IS Y   
Sbjct: 202 LEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASR 261

Query: 313 GFPKESLEL----------------------------------LMCMVRSGFRADLFTAI 338
           G  KE+ +L                                  L+  +R+    D    +
Sbjct: 262 GIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMV 321

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             +++ S +  I+ GK++H + +R   D   +V N+LI MY  C DL  A  +F   + K
Sbjct: 322 VGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEK 381

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            +++W++M+ GY   D+  E   LF EM  EG+E ++VTI ++LP C  I  L+H K  H
Sbjct: 382 GLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFH 441

Query: 459 GYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
            Y MK         +  A+   Y++ G +  A ++FD   +  +D +T+ SMI  Y   G
Sbjct: 442 CYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFD--SLTKRDEVTYTSMILGYGMKG 499

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           +     KL+ +M + +++PD +T + +LTAC ++GLV +G+++FK M + +G  P  EHY
Sbjct: 500 EGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHY 559

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
           A M +L GRAG +++A+E +  MP+KP + +W  LL AC++H  TE+ E  A KL+ M+P
Sbjct: 560 ACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKP 619

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
           +++G YVL++N+YAAAG W  +A++RT++R+ G++K PGC+W+++G     F   D S+P
Sbjct: 620 DHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDVGSEFSPFLVGDSSNP 679

Query: 698 QADAIYTILGILELEIMEGRRESSEEL 724
            A  IY ++  L   + +     SEEL
Sbjct: 680 HASEIYPLMDGLNELMKDAGYVRSEEL 706



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 233/469 (49%), Gaps = 47/469 (10%)

Query: 25  QTRPHMTATHSF-----SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYA 76
           Q + H  ++H       SLL  C + + L   +Q+HA+ I L GL QN IL S L++ Y 
Sbjct: 69  QIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISL-GLDQNPILVSRLVNFYT 127

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           N+ LL  +Q V  S  + + L +  ++    + G + + L VYK M  + + P E TYP 
Sbjct: 128 NVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPS 187

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           V+++C   LDF SG ++H  +     +    V +ALV  Y +  G  E  + +     + 
Sbjct: 188 VLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRF-GKLEIARHLFDNMPRR 246

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD-------------SGT------LI 237
               WN++IS     G  +++F+LF  M+ EG E +             SG       LI
Sbjct: 247 DSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLI 306

Query: 238 NLLRSTVELK---------------SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
           + +R+++ L                +++LG+ +H  AV + F    +V  AL++MYS+  
Sbjct: 307 SQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCR 366

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L  A +LF +  +K  + WN M+S Y      +E   L   M++ G   +  T  + + 
Sbjct: 367 DLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLP 426

Query: 343 SISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
             + + N++ GK+ H  ++++   +  + + N+L+DMY     +  ARK+FDS+  +  V
Sbjct: 427 LCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEV 486

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIG 449
           +++SMI GY    +    L+LF EM KLE ++ D VT++ +L AC + G
Sbjct: 487 TYTSMILGYGMKGEGETTLKLFEEMCKLE-IKPDHVTMVAVLTACSHSG 534



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 204/433 (47%), Gaps = 37/433 (8%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL +    KSL  G+ +H   +     ++  + + L++ Y+ +  L DA+ + +  +  
Sbjct: 86  SLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTL 145

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D + WN++ISAY ++GF  E+L +   M+      D +T  + + +     +   G ++H
Sbjct: 146 DPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVH 205

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
            ++  +  ++ + VHN+L+ MY     L  AR +FD++  +  VSW+++I  Y +     
Sbjct: 206 RSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWK 265

Query: 418 EALRLFSEMKLEGVE----------------------------------VDFVTIINILP 443
           EA +LF  M+ EGVE                                  +D + ++  L 
Sbjct: 266 EAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLN 325

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC +IGA++  K +HG++++   +   +V  A+   Y++C  +  A  LF   + + K +
Sbjct: 326 ACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILF--HRTEEKGL 383

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ITWN+M+S YA    + +   L+ +M Q  + P+ +T   +L  C     ++ G+     
Sbjct: 384 ITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCY 443

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           + +   +E     + ++V++  R+G + EAR+ V D   K D   +  ++    M  E E
Sbjct: 444 IMKHKQFEEYLLLWNALVDMYSRSGRVLEARK-VFDSLTKRDEVTYTSMILGYGMKGEGE 502

Query: 624 LAELTAEKLISME 636
                 E++  +E
Sbjct: 503 TTLKLFEEMCKLE 515


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 220/597 (36%), Positives = 324/597 (54%), Gaps = 47/597 (7%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG--------FENEKGMIQRKFKDLKSRWN 202
           ++IH+ ++K G ++   V   L+ F      G        FE      Q+  K     WN
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEEN----QQHHKHNVFIWN 100

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR--------- 253
           SLI     +     S  LF  M   G + +S T   L +S  + K+   G+         
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160

Query: 254 -----------IVHCVAVVS--DFCK---------DLSVNTALLSMYSKLASLEDAKMLF 291
                      ++H  A V   DF +         D    TAL++ Y     L+DA+ LF
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLF 220

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D++  KD V WN MIS Y QSG  +E++     M  +    +  T +  +S+    ++ E
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GK + + V  NG    + + N+LIDMYC+C + + AR++FD ++ K V+SW++MI GY 
Sbjct: 281 LGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYS 340

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLS 470
                 EAL LF  M    V+ + VT + IL AC  +GAL+  K++H Y  K L  +S +
Sbjct: 341 YLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNA 400

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
           S+ T++   YAKCGCIE A  +F    + S+++ +WN+M+S +A HG   +   L+++M 
Sbjct: 401 SLWTSLIDMYAKCGCIEAAERVF--RSMHSRNLASWNAMLSGFAMHGHAERALALFSEMV 458

Query: 531 QSDV-RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
              + RPD ITF+G+L+AC  AGLV+ G   F+ M + YG  P  +HY  M++LL RA  
Sbjct: 459 NKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEK 518

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
            +EA  L+K+M  +PD  +WG LLSACK H   E  E  AE+L  +EPENAG +VLLSNI
Sbjct: 519 FEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNI 578

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           YA AG+W+ VA++RT L D+G+KK PGC+ IEI   VHEF   D+ HP+ + IY +L
Sbjct: 579 YAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKML 635



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 156/626 (24%), Positives = 273/626 (43%), Gaps = 100/626 (15%)

Query: 21  FPANQTRPHMTATHSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID------ 73
            PA+     +   H + +LL  C+N    +QIH+  II  GL+  + + S LI       
Sbjct: 16  LPASDPPYKILEQHPYLNLLEKCKNINTFKQIHS-LIIKTGLNNTVFVQSKLIHFCAVSP 74

Query: 74  ----SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
               SYA L L   +QQ        N  ++ ++++  S       +L ++ +M    + P
Sbjct: 75  SGDLSYA-LSLFEENQQHHKH----NVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQP 129

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-----------DSFDDVGD-------- 170
              T+PF+ +SC+       G+++HA  +KL               +  VG+        
Sbjct: 130 NSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVF 189

Query: 171 ------------ALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKS 217
                       AL+  Y+   G  ++ + +      KD+ S WN++IS  VQ+G+ E++
Sbjct: 190 DKSSLRDAVSFTALITGYVS-QGCLDDARRLFDEIPVKDVVS-WNAMISGYVQSGRFEEA 247

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
              F  M+      +  T++ +L +    +S ELG+ +      + F  +L +  AL+ M
Sbjct: 248 IVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDM 307

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K    + A+ LFD + +KD + WN MI  Y      +E+L L   M+RS  + +  T 
Sbjct: 308 YCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTF 367

Query: 338 IAAVSSISTMKNIEWGKQMHANV---LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           +  + + + +  ++ GK +HA +   LRN S+   S+  SLIDMY +C  +  A ++F S
Sbjct: 368 LGILHACACLGALDLGKWVHAYIDKNLRNSSN--ASLWTSLIDMYAKCGCIEAAERVFRS 425

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVDFVTIINILPACVNIGALEH 453
           + ++ + SW++M+ G+  H  +  AL LFSEM  +G+   D +T + +L AC   G ++ 
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVD- 484

Query: 454 VKYLHGYSMKLGLNSLSSV--NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
                     LG     S+  +  I       GC  M   L   EK +  +I+       
Sbjct: 485 ----------LGHQYFRSMIQDYGISPKLQHYGC--MIDLLARAEKFEEAEIL------- 525

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
                            MK  ++ PD   +  LL+AC   G VE G  + + +   +  E
Sbjct: 526 -----------------MKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERL---FQLE 565

Query: 572 PSQE-HYASMVNLLGRAGHMDEAREL 596
           P     +  + N+   AG  D+   +
Sbjct: 566 PENAGAFVLLSNIYAGAGRWDDVARI 591


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 211/620 (34%), Positives = 337/620 (54%), Gaps = 12/620 (1%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + + +++   ++ G Y + + ++K+  +  +   + T+   +  C   LD   G  IH
Sbjct: 5   NVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIH 64

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGK 213
           A +   G      + ++L++ Y KC  G  +   ++     +L S  WNSLI+  V+ G 
Sbjct: 65  ALITVSGLGGPVLLTNSLIDMYCKC--GRIDWARLVFESADELDSVSWNSLIAGYVRIGS 122

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVE--LKSLELGRIVHCVAVVSDFCKDLSVN 271
           +++   L   M   G   +S  L + L++       S+E G+++H  AV      D+ V 
Sbjct: 123 NDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVG 182

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ-----SGFPKESLELLMCMV 326
           TALL  Y+K+  LEDA  +F  M D + V++N MI+ + Q       F  E++ L   M 
Sbjct: 183 TALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQ 242

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
             G +   FT  + + + ST++  E GKQ+HA + +        + N+L+++Y     + 
Sbjct: 243 SRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE 302

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
              K F S     VVSW+S+I G+V + Q    L LF E+   G + D  TI  +L AC 
Sbjct: 303 DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACA 362

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           N+ A++  + +H Y++K G+ + + +  +    YAKCG I+ A   F E K  + DI++W
Sbjct: 363 NLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK--NPDIVSW 420

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           + MIS+ A+HG   +   L+  MK S + P+ ITFLG+L AC + GLVEEG   F+ MK+
Sbjct: 421 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 480

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G  P+ +H A +V+LLGRAG + EA   + D  F+ D  +W  LLSAC++H  T+  +
Sbjct: 481 DHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGK 540

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
             AE++I +EPE A +YVLL NIY  AG      ++R  ++DRG+KK PG SWIE+G +V
Sbjct: 541 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVV 600

Query: 687 HEFWAADQSHPQADAIYTIL 706
           H F A D+SHP +  IY  L
Sbjct: 601 HSFVAGDRSHPNSQVIYVQL 620



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 165/327 (50%), Gaps = 11/327 (3%)

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  ++ V WN +IS Y Q GF  E + L      S  R D FT   A+S      ++  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +HA +  +G    V + NSLIDMYC+C  ++ AR +F+S      VSW+S+I GYV  
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVN--IGALEHVKYLHGYSMKLGLNSLSS 471
             + E LRL  +M   G+ ++   + + L AC +    ++E  K LHG ++KLGL+    
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK-----LY 526
           V TA+  +YAK G +E A ++F  + +   +++ +N+MI+ + +    +  F      L+
Sbjct: 181 VGTALLDTYAKIGDLEDATKIF--KLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLF 238

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M+   ++P   TF  +L AC      E G+ I  ++ + Y  +  +    ++V L   
Sbjct: 239 FEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELYSL 297

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLL 613
           +G +++  +     P K D   W  L+
Sbjct: 298 SGSIEDGLKCFHSTP-KLDVVSWTSLI 323



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 176/371 (47%), Gaps = 10/371 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF----GEY-EK 114
           GL  ++++ + L+D+YA +G L  + ++F  +  PN ++Y  ++    +      E+  +
Sbjct: 174 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANE 233

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + ++ +M  + M P+E T+  ++++CS +  F  G++IHAQ+ K    S + +G+ALVE
Sbjct: 234 AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVE 293

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y    G  E+         K     W SLI   VQNG+ E    LF  +   G + D  
Sbjct: 294 LY-SLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEF 352

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+  +L +   L +++ G  +H  A+ +       +  + + MY+K   ++ A M F + 
Sbjct: 353 TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET 412

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            + D V W++MIS+  Q G  KE+++L   M  SG   +  T +  + + S    +E G 
Sbjct: 413 KNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGL 472

Query: 355 QMHANVLRNGSDYQVSVHNS--LIDMYCECEDLNCARK-IFDSVKTKTVVSWSSMIKGYV 411
           + +  +++       +V +S  ++D+      L  A   I DS      V W S++    
Sbjct: 473 R-YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACR 531

Query: 412 THDQSLEALRL 422
            H  +    R+
Sbjct: 532 VHKATDTGKRV 542



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 136/290 (46%), Gaps = 8/290 (2%)

Query: 25  QTRPHMTATHSFS-LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           Q+R    +  +FS +L  C   +  +   QIHA+ I  + L  +  + + L++ Y+  G 
Sbjct: 242 QSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQ-IFKYNLQSDEFIGNALVELYSLSGS 300

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           +    + F+S    + + + +++    + G++E  L ++ ++      P E T   ++ +
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+ L    SGE+IHA  +K G  +F  + ++ +  Y KC           + K  D+ S 
Sbjct: 361 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVS- 419

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVA 259
           W+ +IS   Q+G ++++ +LF+LM+  G   +  T + +L +      +E G R    + 
Sbjct: 420 WSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMK 479

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAK-MLFDKMSDKDRVVWNIMISA 308
                  ++  +  ++ +  +   L +A+  + D   + D V+W  ++SA
Sbjct: 480 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSA 529


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 222/724 (30%), Positives = 378/724 (52%), Gaps = 62/724 (8%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI--TSP 94
           +L + C++    + IH + +++ GL  +    +++I  Y      + +  V   +  +S 
Sbjct: 34  TLFHQCKSLASAELIHQQ-LLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHPSSH 89

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
               +  +++     G  E  L +Y++M      P   T+PFV+++C  +  F  G  +H
Sbjct: 90  TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 149

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG----MIQRKFKDLKSRWNSLISLAVQ 210
           A V   GF+    VG+ LV  Y +C G +EN +     M +R   DL S WNS+++  +Q
Sbjct: 150 AVVFASGFEWNVFVGNGLVSMYGRC-GAWENARQVFDEMRERGVGDLVS-WNSIVAAYMQ 207

Query: 211 NGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            G S ++ ++F+ M  + G   D+ +L+N+L +   + +   G+ VH  A+ S   +D+ 
Sbjct: 208 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF 267

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG--------FPK----- 316
           V  A++ MY+K   +E+A  +F++M  KD V WN M++ Y Q G        F K     
Sbjct: 268 VGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 327

Query: 317 ----------------------ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
                                 E+L++   M   G   ++ T ++ +S  +    +  GK
Sbjct: 328 IELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGK 387

Query: 355 QMHANVLR-------NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSS 405
           + H + ++       N     + V N+LIDMY +C+    AR +FD +  K ++VV+W+ 
Sbjct: 388 ETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTV 447

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEG--VEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +I G   H ++ EAL LFS+M      V  +  TI   L AC  +GAL   + +H Y ++
Sbjct: 448 LIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLR 507

Query: 464 LGLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
               S +  V   +   Y+K G ++ A  +FD   +  ++ ++W S+++ Y  HG   + 
Sbjct: 508 NRFESAMLFVANCLIDMYSKSGDVDAARVVFD--NMHQRNGVSWTSLMTGYGMHGRGEEA 565

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +++ +M++  + PD +TF+ +L AC ++G+V++G   F  M + +G  P  EHYA MV+
Sbjct: 566 LQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVD 625

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LL RAG +DEA EL++ MP KP   VW  LLSAC++++  EL E  A +L+ +E  N G+
Sbjct: 626 LLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGS 685

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           Y LLSNIYA A  W  VA++R  +++ G+KK PGCSW++  K    F+A D SHP +  I
Sbjct: 686 YTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQI 745

Query: 703 YTIL 706
           Y +L
Sbjct: 746 YDLL 749



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 193/373 (51%), Gaps = 14/373 (3%)

Query: 231 FDSGTLINLLRSTV--ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           F + +    L ST+  + KSL    ++H   +V     D    T ++SMY    S   A 
Sbjct: 22  FSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHD---PTHIISMYLTFNSPAKAL 78

Query: 289 MLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            +  ++      V  WN +I      GF ++ L+L   M R G+R D +T    + +   
Sbjct: 79  SVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGE 138

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSW 403
           + +   G  +HA V  +G ++ V V N L+ MY  C     AR++FD ++ + V   VSW
Sbjct: 139 IPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSW 198

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           +S++  Y+    S+ A+++F  M  + G+  D V+++N+LPAC ++GA    K +HGY++
Sbjct: 199 NSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYAL 258

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           + GL     V  A+   YAKCG +E A ++F+  K+  KD+++WN+M++ Y++ G +   
Sbjct: 259 RSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKV--KDVVSWNAMVTGYSQIGRFDDA 316

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
             L+ ++++  +  +++T+  ++      GL  E   +F++M+   G EP+     S+++
Sbjct: 317 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLC-GSEPNVVTLVSLLS 375

Query: 583 LLGRAGHMDEARE 595
               AG +   +E
Sbjct: 376 GCALAGTLLHGKE 388


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 210/648 (32%), Positives = 345/648 (53%), Gaps = 5/648 (0%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
            L L + ++      G    + +VF  +   +   +  ++    K G  E+ L +Y +M 
Sbjct: 128 GLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMM 187

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P   T+P V+RSC  + D+  G ++HA V++ GF    DV +AL+  Y KC    
Sbjct: 188 WAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVV 247

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              K        D  S WN++I+   +NG+     ELF  M  +  + +  T+ ++  ++
Sbjct: 248 AARKVFDSMAVMDCIS-WNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVAS 306

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L  +   + +H +AV   F  D++   +L+ MY+ L  +  A+ +F +M  +D + W 
Sbjct: 307 GLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWT 366

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS Y ++GFP ++LE+   M  +    D  T  +A+++ + + +++ G ++H      
Sbjct: 367 AMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESK 426

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    V V N+L++MY + + ++ A ++F  +  K VVSWSSMI G+  + ++ EAL  F
Sbjct: 427 GFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYF 486

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M L  V+ + VT I  L AC   GAL   K +H + ++ G+     +  A+   Y KC
Sbjct: 487 RHM-LADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKC 545

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G    A   F      +KD+++WN MI+ +  HG+       + QM +    PD +TF+ 
Sbjct: 546 GQTGYAWAQFCAH--GAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVA 603

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL AC   G+V EG  +F  M + Y   P+ +HYA MV+LL R G + EA   + +MP  
Sbjct: 604 LLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPIT 663

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PDA VWG LL+ C++H   EL EL A+ ++ +EP +AG +VLL ++YA AG W+ +A++R
Sbjct: 664 PDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVR 723

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILE 710
             +R++GL    GCSW+E+  +VH F   D+SHPQ   I T+L GI E
Sbjct: 724 KTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYE 771



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 196/401 (48%), Gaps = 3/401 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA +++  G  + + + + L+  YA  G +  +++VF+S+   + + +  ++    +
Sbjct: 215 REVHA-HVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFE 273

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE    L ++  M    + P   T   V  +   L D    +++H   VK GF +    
Sbjct: 274 NGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAF 333

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L++ Y    G     + +  R        W ++IS   +NG  +K+ E++ LM +  
Sbjct: 334 CNSLIQMYASL-GMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNN 392

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+ + L +   L SL++G  +H +A    F   + V  ALL MY+K   ++ A 
Sbjct: 393 VSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAI 452

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F  M +KD V W+ MI+ +  +    E+L     M+ +  + +  T IAA+++ +   
Sbjct: 453 EVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATG 511

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  GK++HA+VLR G  Y+  + N+LID+Y +C     A   F +   K VVSW+ MI 
Sbjct: 512 ALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIA 571

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           G+V H     AL  F++M   G   D VT + +L AC   G
Sbjct: 572 GFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGG 612



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 179/402 (44%), Gaps = 12/402 (2%)

Query: 18  FLRFPANQTRPHMTATHSFSLLN-LCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           FL    ++ +P++    S ++ + L  +    +++H    +  G   ++   ++LI  YA
Sbjct: 284 FLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHG-LAVKRGFATDVAFCNSLIQMYA 342

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           +LG++  ++ VF+ + + +++ +  ++    K G  +K L VY  M + ++ P + T   
Sbjct: 343 SLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIAS 402

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRK 193
            + +C+CL     G K+H      GF S+  V +AL+E Y K    D   E  K M +  
Sbjct: 403 ALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPE-- 460

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            KD+ S W+S+I+    N ++ ++   F+ M +   + +S T I  L +     +L  G+
Sbjct: 461 -KDVVS-WSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACAATGALRSGK 517

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H   +      +  +  AL+ +Y K      A   F     KD V WNIMI+ +   G
Sbjct: 518 EIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHG 577

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM-HANVLRNGSDYQVSVH 372
             + +L     MV+ G   D  T +A + + S    +  G ++ H+   +      +  +
Sbjct: 578 NGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHY 637

Query: 373 NSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTH 413
             ++D+      L  A    + +  T     W +++ G   H
Sbjct: 638 ACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIH 679


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 219/706 (31%), Positives = 373/706 (52%), Gaps = 46/706 (6%)

Query: 44  NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
           N  HL   H   I+  G + N   S+  ++++   G L  + QVF+ + + N++    ++
Sbjct: 25  NSNHLIDAH---IVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMI 81

Query: 104 KNLSKFGEYEKTLLVYKQMA--------------LQSMYPAEDTYPFV-IRSCSCLLDFI 148
               KFG+  K   ++  M               LQS    E    +  +R      D++
Sbjct: 82  SGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYV 141

Query: 149 S--------GE--------KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           +        GE        +IH  V+KLG++    V ++LV+ Y K    +     +  +
Sbjct: 142 TLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY-----LASQ 196

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
            FK + ++    +NSL++     G +E++ ELF  +   G +    T   LL + V L  
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDD 256

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
            + G+ VH   + ++F  ++ V  ALL  YSK   +++   LF +M + D + +N++I++
Sbjct: 257 TKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITS 316

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y  +G  KES +L   +  + F    F     +S  ++  N+  G+Q+H   +  G++++
Sbjct: 317 YAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFE 376

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             V N+L+DMY +C     A+KIFD++  K+ V W++MI  YV   +  E + +FS+M+ 
Sbjct: 377 SRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRR 436

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            GV  D  T  +IL AC N+ ++   + LH   ++ G  S     +A+  +YAKCGC+  
Sbjct: 437 TGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A + F E  +  ++ ++WN++ISAYA++G+       + QM QS  +PD ++FL +L+AC
Sbjct: 497 AIKSFGE--MPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSAC 554

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            + G VEE    F  M + Y   P +EHY SMV++L R G  DEA +L+ +MPF+P   +
Sbjct: 555 SHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIM 614

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           W  +L++C++H   ELA+  A++L +ME   +A  Y+ +SNIYA AG+W+ VAK++  +R
Sbjct: 615 WSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMR 674

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           DRG++K P  SW+EI    H F A D+SHP+   I   +  L  E+
Sbjct: 675 DRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEM 720



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 179/409 (43%), Gaps = 37/409 (9%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L  S     SL    ++    V + F  +   +   ++ + +   L  A  +FD+M  K+
Sbjct: 14  LRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKN 73

Query: 299 RVVWNIMISA-------------------------------YYQSGFPKESLELLMCMVR 327
            +  N+MIS                                Y QS   KE+  L   M R
Sbjct: 74  TISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR 133

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T +  +S    ++      Q+H +V++ G +Y + V NSL+D YC+   L  
Sbjct: 134 GGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYL 193

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A ++F  +  K  V+++S++ GY     + EA+ LF E+   G++    T   +L A V 
Sbjct: 194 ASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVG 253

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +   +  + +HG+ +K        V  A+   Y+K   ++  G+LF E  +   D I++N
Sbjct: 254 LDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYE--MPELDGISYN 311

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF-KEMKE 566
            +I++YA +G + + F L+ +++ +        F  LL+   ++  +  GR I  + +  
Sbjct: 312 VVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITV 371

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              +E   E+  ++V++  +     EA+++  ++  K     W  ++SA
Sbjct: 372 GANFESRVEN--ALVDMYAKCNGDKEAQKIFDNIACKSTVP-WTAMISA 417


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 370/694 (53%), Gaps = 18/694 (2%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           ++A  S + LN      H   +HA + I  G   ++ ++S+LI+ Y    +   ++QVF+
Sbjct: 224 LSAIASLAALN------HGLLVHA-HAIKQGFESSIYVASSLINMYGKCQMPDDARQVFD 276

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           +I+  N +++  +L   S+ G     + ++  M    ++P E TY  ++ +C+C      
Sbjct: 277 AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEV 336

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G ++H+ ++K  F S   V +AL++ Y K     E  K      ++D  S WN++I   V
Sbjct: 337 GRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHIS-WNAIIVGYV 395

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           Q      +F LF+ M ++G   D  +L ++L +   +K LE G+  HC++V      +L 
Sbjct: 396 QEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLF 455

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
             ++L+ MYSK   ++DA   +  M ++  V  N +I+ Y      KES+ LL  M   G
Sbjct: 456 AGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILG 514

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG----SDYQVSVHNSLIDMYCECEDL 385
            +    T  + +        +  G Q+H  +++ G    S++   +  SL+ MY + + L
Sbjct: 515 LKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEF---LGTSLLGMYMDSQRL 571

Query: 386 NCARKIFDSVKT-KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
             A  +F    + K++V W+++I G++ ++ S  AL L+ EM+   +  D  T + +L A
Sbjct: 572 ADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQA 631

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C  + +L   + +H      G +     ++A+   YAKCG ++ + ++F EE    KD+I
Sbjct: 632 CALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVF-EELATKKDVI 690

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +WNSMI  +AK+G      K++ +M QS + PD +TFLG+LTAC +AG V EGR IF  M
Sbjct: 691 SWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVM 750

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
              YG EP  +HYA MV+LLGR G + EA E +  +  +P+A +W  LL AC++H + + 
Sbjct: 751 VNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKR 810

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            +  A+KLI +EP+++  YVLLSN+YAA+G W+    +R  +  + ++K PGCSWI +G+
Sbjct: 811 GQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWIVVGQ 870

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEIMEGRR 718
             + F A D SH   D I   L  L   I +  R
Sbjct: 871 ETNLFVAGDISHSSYDEISKALKHLTALIKDNNR 904



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/547 (25%), Positives = 265/547 (48%), Gaps = 7/547 (1%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            ++++Y +LG L  + Q+F  +  P  N + +  ++   +K   YE+ L  + QM+   +
Sbjct: 154 TVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGV 213

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
             +  T   V+ + + L     G  +HA  +K GF+S   V  +L+  Y KC    +  +
Sbjct: 214 KSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQ 273

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
                  K++   WN+++ +  QNG      ELF  M   G   D  T  ++L +    +
Sbjct: 274 VFDAISQKNMIV-WNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFE 332

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            LE+GR +H   +   F  +L VN AL+ MY+K  +L++A   F+ M+ +D + WN +I 
Sbjct: 333 YLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIV 392

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            Y Q      +  L   M+  G   D  +  + +S+   +K +E G+Q H   ++ G + 
Sbjct: 393 GYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLET 452

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            +   +SLIDMY +C D+  A K + S+  ++VVS +++I GY   +   E++ L  EM+
Sbjct: 453 NLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNTK-ESINLLHEMQ 511

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS-VNTAIFISYAKCGCI 486
           + G++   +T  +++  C     +     +H   +K GL   S  + T++   Y     +
Sbjct: 512 ILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRL 571

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
             A  LF E     K I+ W ++IS + ++        LY +M+ +++ PD  TF+ +L 
Sbjct: 572 ADANILFSEFS-SLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQ 630

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC     + +GR I   +  + G++  +   +++V++  + G +  + ++ +++  K D 
Sbjct: 631 ACALLSSLHDGREIHSLIFHT-GFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDV 689

Query: 607 RVWGPLL 613
             W  ++
Sbjct: 690 ISWNSMI 696



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 224/492 (45%), Gaps = 42/492 (8%)

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           E+ L  Y         P + T+   + +C+ L +   G  +H+ V+K G +S      AL
Sbjct: 29  ERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGAL 88

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           +  Y KC+             F  L +  W +LIS  VQ G   ++  +F  MR   A  
Sbjct: 89  IHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMR-NSAVP 147

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D   L+ +L +                                   Y  L  L+DA  LF
Sbjct: 148 DQVALVTVLNA-----------------------------------YISLGKLDDACQLF 172

Query: 292 DKMSDKDR--VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            +M    R  V WN+MIS + ++   +E+L     M + G ++   T  + +S+I+++  
Sbjct: 173 QQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAA 232

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  G  +HA+ ++ G +  + V +SLI+MY +C+  + AR++FD++  K ++ W++M+  
Sbjct: 233 LNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGV 292

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y  +      + LF +M   G+  D  T  +IL  C     LE  + LH   +K    S 
Sbjct: 293 YSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSN 352

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             VN A+   YAK G ++ AG+ F  E +  +D I+WN++I  Y +    +  F L+ +M
Sbjct: 353 LFVNNALIDMYAKAGALKEAGKHF--EHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRM 410

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
               + PD ++   +L+AC N  ++E G+  F  +    G E +    +S++++  + G 
Sbjct: 411 ILDGIVPDEVSLASILSACGNIKVLEAGQ-QFHCLSVKLGLETNLFAGSSLIDMYSKCGD 469

Query: 590 MDEARELVKDMP 601
           + +A +    MP
Sbjct: 470 IKDAHKTYSSMP 481



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 181/418 (43%), Gaps = 45/418 (10%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +WN  +    ++  SE+  + +      G   D  T    L +  +L++L LGR VH   
Sbjct: 15  QWNWRVQ-GTKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCV 73

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSGFPKE 317
           + S          AL+ +Y+K  SL  A+ +F          V W  +IS Y Q+G P E
Sbjct: 74  IKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHE 133

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +L +                                     + +RN +        ++++
Sbjct: 134 ALHIF------------------------------------DKMRNSAVPDQVALVTVLN 157

Query: 378 MYCECEDLNCARKIFDS--VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
            Y     L+ A ++F    +  + VV+W+ MI G+       EAL  F +M   GV+   
Sbjct: 158 AYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSR 217

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+ ++L A  ++ AL H   +H +++K G  S   V +++   Y KC   + A ++FD 
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFD- 276

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             I  K++I WN+M+  Y+++G  S   +L+  M    + PD  T+  +L+ C     +E
Sbjct: 277 -AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLE 335

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
            GR +   + +   +  +     +++++  +AG + EA +  + M ++ D   W  ++
Sbjct: 336 VGRQLHSAIIKKR-FTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYR-DHISWNAII 391



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           V  W+  ++G   H  S   L+ ++     G   D  T    L AC  +  L   + +H 
Sbjct: 13  VRQWNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHS 71

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             +K GL S S    A+   YAKC  +  A  +F          ++W ++IS Y + G  
Sbjct: 72  CVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLP 131

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            +   ++ +M+ S V PD +  + +L A ++ G +++   +F++M
Sbjct: 132 HEALHIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDACQLFQQM 175


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 224/675 (33%), Positives = 377/675 (55%), Gaps = 24/675 (3%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGT 101
           E+     +IH   II  G    + ++++L+  YA    +  ++++F+ +   N ++ + +
Sbjct: 24  EDIHRGAEIHG-LIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNS 82

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--GEKIHAQVVK 159
           I+   S  G+  + L ++++M  Q      +TY  V    +C        G +IHA ++K
Sbjct: 83  IISAYSLNGQCMEALGLFREM--QKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILK 140

Query: 160 LG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGK 213
                D +  V +ALV  +++       +     R F +L  +    WNS+I+   QNG 
Sbjct: 141 SNQVLDVY--VANALVAMHVR-----FGKMSYAARIFDELDEKDNITWNSMIAGFTQNGL 193

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             ++ + F  ++    + D  +LI++L ++  L  L  G+ +H  A+ +    +L +   
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNT 253

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYSK   +  A ++FDKM +KD + W  +I+AY Q+    E+L+LL  +   G   D
Sbjct: 254 LIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVD 313

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIF 392
                + + + S ++ +   K++H   L+ G SD  + + N +ID+Y +C ++N A ++F
Sbjct: 314 TMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSD--LMMQNMIIDVYADCGNINYATRMF 371

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +S+K K VVSW+SMI  YV +  + EAL +F  MK   VE D +T+++IL A  ++ AL 
Sbjct: 372 ESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALN 431

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +HG+  + G     S   ++   YA CG +E A ++F   +  SK ++ W +MI+A
Sbjct: 432 KGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR--SKSLVLWTTMINA 489

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y  HG      +L++ M+   + PD ITFL LL AC ++GL+ EG+ + + MK  Y  EP
Sbjct: 490 YGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEP 549

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             EHYA +V+LLGRA H++EA   VK M  +P A VW   L AC++HS  +L E+ A+KL
Sbjct: 550 WPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKL 609

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + ++P++ G+YVL+SN++AA+G+W  V ++R  ++  GLKK PGCSWIE+G  VH F   
Sbjct: 610 LDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVR 669

Query: 693 DQSHPQADAIYTILG 707
           D+SHP++  IY  L 
Sbjct: 670 DKSHPESYKIYQKLA 684



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 142/497 (28%), Positives = 265/497 (53%), Gaps = 13/497 (2%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T+P V+++C  + D   G +IH  ++K G+DS   V ++LV  Y KC+      K   + 
Sbjct: 12  TFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRM 71

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             ++    WNS+IS    NG+  ++  LF+ M+  G   ++ TL+  L++  +    +LG
Sbjct: 72  NERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLG 131

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H   + S+   D+ V  AL++M+ +   +  A  +FD++ +KD + WN MI+ + Q+
Sbjct: 132 MEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQN 191

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G   E+L+    +  +  + D  + I+ +++   +  +  GK++HA  ++N  D  + + 
Sbjct: 192 GLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIG 251

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N+LIDMY +C  +  A  +FD +  K ++SW+++I  Y  ++   EAL+L  +++ +G++
Sbjct: 252 NTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMD 311

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           VD + I + L AC  +  L H K +HGY++K GL+ L   N  I + YA CG I  A  +
Sbjct: 312 VDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDV-YADCGNINYATRM 370

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E I  KD+++W SMIS Y  +G  ++   ++  MK++ V PD IT + +L+A  +  
Sbjct: 371 F--ESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLS 428

Query: 553 LVEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            + +G+     IF++     G+        S+V++    G ++ A ++      K    +
Sbjct: 429 ALNKGKEIHGFIFRK-----GFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLV-L 482

Query: 609 WGPLLSACKMHSETELA 625
           W  +++A  MH   + A
Sbjct: 483 WTTMINAYGMHGRGKAA 499



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 221/425 (52%), Gaps = 20/425 (4%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           MR+ G  FDS T   +L++   ++ +  G  +H + +   +   + V  +L+SMY+K   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 284 LEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           +  A+ LFD+M++++ VV WN +ISAY  +G   E+L L   M ++G  A+ +T +AA+ 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           +       + G ++HA +L++     V V N+L+ M+     ++ A +IFD +  K  ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+SMI G+  +    EAL+ F  ++   ++ D V++I+IL A   +G L + K +H Y+M
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K  L+S   +   +   Y+KC C+  AG +FD  K+ +KD+I+W ++I+AYA++   ++ 
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFD--KMINKDLISWTTVIAAYAQNNCHTEA 298

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM-- 580
            KL  +++   +  D +     L AC        G       KE +GY   +     M  
Sbjct: 299 LKLLRKVQTKGMDVDTMMIGSTLLAC-------SGLRCLSHAKEVHGYTLKRGLSDLMMQ 351

Query: 581 ---VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH---SETELAELTAEKLIS 634
              +++    G+++ A  + + +  K D   W  ++S C +H   +   L      K  S
Sbjct: 352 NMIIDVYADCGNINYATRMFESIKCK-DVVSWTSMIS-CYVHNGLANEALGVFYLMKETS 409

Query: 635 MEPEN 639
           +EP++
Sbjct: 410 VEPDS 414


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/505 (38%), Positives = 298/505 (59%), Gaps = 4/505 (0%)

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           L  LA    K +   EL+  ++  G + ++ T   L  +   ++ L  G+I HC+   + 
Sbjct: 99  LRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAG 158

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              D  VN +L++MY++   +  A+ +FD+M D+D V WN MIS Y + GF KE++ L M
Sbjct: 159 LDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFM 218

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M   GF  D  T ++ + +   + ++  G+ +   VL    +    + ++LIDMY +C 
Sbjct: 219 EMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCG 278

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           DL  AR++FDS+  K VV+W+++I GY  +  S EA+ LF+ M+  G   D VT+I +L 
Sbjct: 279 DLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLS 338

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC  IGAL+  K++  ++ + GL     V +A+   YAKCG ++ A  +F  E +  K+ 
Sbjct: 339 ACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVF--ESMPHKNE 396

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPDLITFLGLLTACVNAGLVEEGRIIF 561
           ++WN+MISA A HG   +   L+ +M + +  V+P+ ITF+G+L+ACV+AGLV+EGR +F
Sbjct: 397 VSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLF 456

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + M  S+G  P  EHY+ MV+L  RAG + EA +L+K MP KPD  V G LL AC+    
Sbjct: 457 ESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRN 516

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            ++ E   +  + ME  N+GNYV+ S IYA   +W+  AKMR  +R  G+ KTPGCSWI+
Sbjct: 517 ADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWID 576

Query: 682 IGKLVHEFWAADQSHPQADAIYTIL 706
           IG  VHEF A D  H  +  IY +L
Sbjct: 577 IGAHVHEFHAGDSLHNHSMNIYQLL 601



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 167/569 (29%), Positives = 270/569 (47%), Gaps = 58/569 (10%)

Query: 25  QTRPHMTATHSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           Q   H T T    SL+  C++   L+QIHA+ +I      N +LS  +ID    L  L+ 
Sbjct: 25  QKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSK-IID----LKDLAY 79

Query: 84  SQQVFNSITSPNSLLYGTILKNL-SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           +  VFN +T PN   +  +L+ L + + +Y+  + +Y ++    +     TYPF+  +C 
Sbjct: 80  ASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACG 139

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-- 200
            +   + G+  H  V K G D  + V  +L+  Y +C      E G  ++ F ++  R  
Sbjct: 140 NVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARC-----GEMGFARKVFDEMGDRDL 194

Query: 201 --WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             WNS+IS   + G ++++  LF  MR EG E D  TL+++L +  +L  L LGR V   
Sbjct: 195 VSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGF 254

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            +      +  + +AL+ MY K   L  A+ +FD M +KD V WN +I+ Y Q+G   E+
Sbjct: 255 VLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEA 314

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + L   M  +G   D  T I  +S+ ST+  ++ GK +  +    G  + V V ++LIDM
Sbjct: 315 IVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDM 374

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVDFV 436
           Y +C  L+ A ++F+S+  K  VSW++MI     H Q+ EAL LF  M  +   V+ + +
Sbjct: 375 YAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDI 434

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T I +L ACV+ G ++  + L   SM L    +  V                        
Sbjct: 435 TFIGVLSACVHAGLVDEGRQLF-ESMNLSFGLVPKVE----------------------- 470

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV---NAGL 553
                    ++ M+   A+ G   + + L  +M     +PD I    LL AC    NA +
Sbjct: 471 --------HYSCMVDLCARAGLLYEAWDLIKKMPG---KPDEIVLGSLLGACQRRRNADV 519

Query: 554 VEEGRIIFKEMK--ESYGYEPSQEHYASM 580
            E    +F EM+   S  Y  S + YA+M
Sbjct: 520 GERVIQLFLEMELSNSGNYVISSKIYANM 548


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  359 bits (921), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 379/709 (53%), Gaps = 19/709 (2%)

Query: 19  LRFPANQTRPHMTATHSFSLLNLCENPQHLQ--QIHARYIILHGLHQNLILSSNLIDSYA 76
           L     Q  P    T+S  LL  C   ++ Q  ++  R ++  GL  + ++ + LI  Y+
Sbjct: 32  LDLMTQQNAPPDLTTYSI-LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYS 90

Query: 77  NLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
             G    ++ +F  + +   L+ +  ++   +      + +  +  M     YP E  + 
Sbjct: 91  KCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFA 150

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKF 194
            VIR+CS       GE I+  VVK G+   D  VG  L++ ++K  G    + G   + F
Sbjct: 151 AVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG----DLGSAYKVF 206

Query: 195 KDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
             +  R    W  +I+   Q G +  + +LF  M + G   D  T  ++L +  EL  L 
Sbjct: 207 DKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA 266

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMIS 307
           LG+ +H   +      D+ V  +L+ MY+K A   S++D++ +F++M + + + W  +I+
Sbjct: 267 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 326

Query: 308 AYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           AY QSG   KE++EL   M+    R + F+  + + +   + +   G+Q+++  ++ G  
Sbjct: 327 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 386

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
               V NSLI MY     +  ARK FD +  K +VS+++++ GY  + +S EA  LF+E+
Sbjct: 387 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 446

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
              G+ +   T  ++L    +IGA+   + +HG  +K G  S   +  A+   Y++CG I
Sbjct: 447 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 506

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           E A ++F+E  ++ +++I+W SMI+ +AKHG  ++  +++ +M ++  +P+ IT++ +L+
Sbjct: 507 EAAFQVFNE--MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 564

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC + G++ EG+  F  M + +G  P  EHYA MV+LLGR+G + EA E +  MP   DA
Sbjct: 565 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 624

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            VW  LL AC++H  TEL    AE ++  EP++   Y+LLSN++A+AG+W  V K+R  +
Sbjct: 625 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 684

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++R L K  GCSWIE+   VH F   + SHPQA  IY  L  L  +I E
Sbjct: 685 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 733



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 208/410 (50%), Gaps = 16/410 (3%)

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
           F+ LK+R    + +    G+   +F    LM  + A  D  T   LL+S +  ++ +LG+
Sbjct: 9   FEPLKNRLIRQLDV----GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGK 64

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQS 312
           +VH   + S    D  V   L+S+YSK    E A+++F+ M +K D V W+ M+S +  +
Sbjct: 65  LVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANN 124

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW-GKQMHANVLRNGS-DYQVS 370
               +++   + M+  GF  + +   A + + S   N  W G+ ++  V++ G  +  V 
Sbjct: 125 SMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSN-ANYAWVGEIIYGFVVKTGYLEADVC 183

Query: 371 VHNSLIDMYCECE-DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
           V   LIDM+ +   DL  A K+FD +  + +V+W+ MI  +     + +A+ LF +M+L 
Sbjct: 184 VGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELS 243

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC---GCI 486
           G   D  T  ++L AC  +G L   K LH   ++LGL     V  ++   YAKC   G +
Sbjct: 244 GYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSV 303

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLL 545
           + + ++F  E++   ++++W ++I+AY + G+   +  +L+ +M    +RP+  +F  +L
Sbjct: 304 DDSRKVF--EQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
            AC N      G  ++    +  G         S++++  R+G M++AR+
Sbjct: 362 KACGNLSDPYTGEQVYSYAVK-LGIASVNCVGNSLISMYARSGRMEDARK 410


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 183/479 (38%), Positives = 287/479 (59%), Gaps = 8/479 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL+S +  K+++ G+ +H    ++ F  D  + T L+++Y    SL  A++LFD++   
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +WN++I  Y  +G  + +++L   M   G   D FT    + + + +  IE G+++H
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
            +V++ G +  V V  +LIDMY +C  +  AR++FD +  +  V W+SM+  Y  +    
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPD 259

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
             L L SEM L G+     T++  + A  +  AL   + LHG S +    S   V TA+ 
Sbjct: 260 ACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALV 319

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAKCG + +A  LF  E++  K +++WN+MI+ YA HG  ++   L+ +M +   +PD
Sbjct: 320 DMYAKCGSVRVARNLF--ERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRV-AKPD 376

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITF+G+L+AC + GL+EEG + F+ M   Y  +P+ +HY  MV+LLG +G +DEA  L+
Sbjct: 377 HITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLI 436

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
             M   PD+ VWG LL++CK+H+  EL E+  E+LI +EP++AGNYV+LSNIYA AGKW 
Sbjct: 437 MQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWE 496

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           GVAK+R  + DR LKK+  CSWIE+   VH F + D SHP +D IY+     ELE + G
Sbjct: 497 GVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYS-----ELERVGG 550



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 217/476 (45%), Gaps = 43/476 (9%)

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFEN 185
           + P    Y  +++SC        G+++HAQV   GF  FD V    LV  Y  CD    +
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGF-GFDTVIATKLVNLYCVCDS-LSS 128

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            + +  R  K     WN LI     NG  E + +L+  M   G   D+ T   +L++   
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L ++E GR +H   V + + KD+ V  AL+ MY+K   +  A+ +FDK+  +D V+WN M
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           ++AY Q+G P   L L   MV +G R    T + A+S+ +    +  G+++H    R   
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEF 308

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           +    V  +L+DMY +C  +  AR +F+ +  K VVSW++MI GY  H  + EAL LF E
Sbjct: 309 ESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEE 368

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M     + D +T + +L AC + G LE      G+               +F        
Sbjct: 369 MN-RVAKPDHITFVGVLSACSHGGLLE-----EGW---------------MFFE------ 401

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
                 +  + KID   +  +  M+      G   + + L  QMK   V PD   +  LL
Sbjct: 402 -----TMIRDYKIDPT-VQHYTCMVDLLGHSGRLDEAYNLIMQMK---VLPDSGVWGALL 452

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDM 600
            +C     VE G I  + + E    EP    +Y  + N+  +AG  +   +L K M
Sbjct: 453 NSCKIHANVELGEIALERLIE---LEPDDAGNYVILSNIYAQAGKWEGVAKLRKLM 505



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 179/364 (49%), Gaps = 14/364 (3%)

Query: 26  TRPH-----MTATHS--FSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSY 75
           + PH     +T T+S   SLL  C   + ++   Q+HA+ + L G   + ++++ L++ Y
Sbjct: 62  SNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQ-VCLAGFGFDTVIATKLVNLY 120

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
                LS ++ +F+ I   N  L+  +++  +  G YE  + +Y QM    + P   T+P
Sbjct: 121 CVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFP 180

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           FV+++C+ L     G +IH  VV+ G++    VG AL++ Y KC G   + + +  +   
Sbjct: 181 FVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC-GCVGSAREVFDKILV 239

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WNS+++   QNG  +    L   M + G      TL+  + ++ +  +L  GR +
Sbjct: 240 RDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGREL 299

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H ++   +F     V TAL+ MY+K  S+  A+ LF+++  K  V WN MI+ Y   G  
Sbjct: 300 HGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHA 359

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNS 374
            E+L+L   M R   + D  T +  +S+ S    +E G      ++R+   D  V  +  
Sbjct: 360 TEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTC 418

Query: 375 LIDM 378
           ++D+
Sbjct: 419 MVDL 422


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 221/709 (31%), Positives = 379/709 (53%), Gaps = 19/709 (2%)

Query: 19  LRFPANQTRPHMTATHSFSLLNLCENPQHLQ--QIHARYIILHGLHQNLILSSNLIDSYA 76
           L     Q  P    T+S  LL  C   ++ Q  ++  R ++  GL  + ++ + LI  Y+
Sbjct: 14  LDLMTQQNAPPDLTTYSI-LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYS 72

Query: 77  NLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
             G    ++ +F  + +   L+ +  ++   +      + +  +  M     YP E  + 
Sbjct: 73  KCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFA 132

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKF 194
            VIR+CS       GE I+  VVK G+   D  VG  L++ ++K  G    + G   + F
Sbjct: 133 AVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG----DLGSAYKVF 188

Query: 195 KDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
             +  R    W  +I+   Q G +  + +LF  M + G   D  T  ++L +  EL  L 
Sbjct: 189 DKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLA 248

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMIS 307
           LG+ +H   +      D+ V  +L+ MY+K A   S++D++ +F++M + + + W  +I+
Sbjct: 249 LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIIT 308

Query: 308 AYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           AY QSG   KE++EL   M+    R + F+  + + +   + +   G+Q+++  ++ G  
Sbjct: 309 AYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIA 368

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
               V NSLI MY     +  ARK FD +  K +VS+++++ GY  + +S EA  LF+E+
Sbjct: 369 SVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 428

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
              G+ +   T  ++L    +IGA+   + +HG  +K G  S   +  A+   Y++CG I
Sbjct: 429 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 488

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           E A ++F+E  ++ +++I+W SMI+ +AKHG  ++  +++ +M ++  +P+ IT++ +L+
Sbjct: 489 EAAFQVFNE--MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 546

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC + G++ EG+  F  M + +G  P  EHYA MV+LLGR+G + EA E +  MP   DA
Sbjct: 547 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 606

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            VW  LL AC++H  TEL    AE ++  EP++   Y+LLSN++A+AG+W  V K+R  +
Sbjct: 607 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 666

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++R L K  GCSWIE+   VH F   + SHPQA  IY  L  L  +I E
Sbjct: 667 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 715



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 200/392 (51%), Gaps = 12/392 (3%)

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+   +F    LM  + A  D  T   LL+S +  ++ +LG++VH   + S    D  V 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             L+S+YSK    E A+++F+ M +K D V W+ M+S +  +    +++   + M+  GF
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 331 RADLFTAIAAVSSISTMKNIEW-GKQMHANVLRNGS-DYQVSVHNSLIDMYCECE-DLNC 387
             + +   A + + S   N  W G+ ++  V++ G  +  V V   LIDM+ +   DL  
Sbjct: 125 YPNEYCFAAVIRACSN-ANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A K+FD +  + +V+W+ MI  +     + +A+ LF +M+L G   D  T  ++L AC  
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC---GCIEMAGELFDEEKIDSKDII 504
           +G L   K LH   ++LGL     V  ++   YAKC   G ++ + ++F  E++   +++
Sbjct: 244 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF--EQMPEHNVM 301

Query: 505 TWNSMISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           +W ++I+AY + G+   +  +L+ +M    +RP+  +F  +L AC N      G  ++  
Sbjct: 302 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 361

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
             +  G         S++++  R+G M++AR+
Sbjct: 362 AVK-LGIASVNCVGNSLISMYARSGRMEDARK 392


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/525 (35%), Positives = 288/525 (54%), Gaps = 33/525 (6%)

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           + EK+  +++ MR +G   D  +   LL++   +KSL  G  +H +A    F  D  V T
Sbjct: 102 EPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQT 161

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MY+    + +A+++FDKM  +D V W+IMI  Y QSG   ++L L   M       
Sbjct: 162 GLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEP 221

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA---- 388
           D       +S+     N+ +GK +H  ++ N       + ++L+ MY  C  ++ A    
Sbjct: 222 DEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLF 281

Query: 389 ---------------------------RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
                                      R +F+ +  K +V WS+MI GY   D   EAL 
Sbjct: 282 EKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALN 341

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF+EM+  G++ D VT+++++ AC ++GAL+  K++H +  K G      +N A+   YA
Sbjct: 342 LFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYA 401

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A  +FD  K+  K++I+W  MISA+A HGD     + + QM+  ++ P+ ITF
Sbjct: 402 KCGSLERARRIFD--KMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITF 459

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L AC +AGLVEEGR IF  M   +   P   HY  MV+L GRA  + EA ELV+ MP
Sbjct: 460 VGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMP 519

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
             P+  +WG L++AC++H E EL E  A++L+ ++P++ G +V LSNIYA A +W  V +
Sbjct: 520 LAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQ 579

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +R  ++ +G+ K  GCS  E+   +HEF  AD+SH  AD IY  L
Sbjct: 580 VRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKL 624



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 253/516 (49%), Gaps = 36/516 (6%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           FS L+   +  HL+Q+HA+ +         +L   +I S A    L  +  VFN I  P 
Sbjct: 27  FSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPE 86

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           + L    L+ LS+  E EKTLLVY++M  Q +     ++P ++++ S +   + G +IH 
Sbjct: 87  THLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHG 146

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
              KLGFDS   V   LV  Y  C G     + M  + F      W+ +I    Q+G   
Sbjct: 147 LAAKLGFDSDPFVQTGLVRMYAAC-GRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV--------------AVV 261
            +  LF+ M+    E D   L  +L +     +L  G+++H                A+V
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265

Query: 262 SDFC-----------------KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           + +                  K+L  +TA+++ YSKL  +E+A+ +F++M  KD V W+ 
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MIS Y +S  P+E+L L   M   G + D  T ++ +++ + +  ++  K +H  V +NG
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               + ++N+LI+MY +C  L  AR+IFD +  K V+SW+ MI  +  H  +  ALR F 
Sbjct: 386 FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFH 445

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFIS-YAK 482
           +M+ E +E + +T + +L AC + G +E  + +  YSM    N +   V+    +  + +
Sbjct: 446 QMEDENIEPNGITFVGVLYACSHAGLVEEGRKIF-YSMINEHNITPKHVHYGCMVDLFGR 504

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              +  A EL +   + + ++I W S+++A   HG+
Sbjct: 505 ANLLREALELVEAMPL-APNVIIWGSLMAACRVHGE 539



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 12/272 (4%)

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE-CEDLNCARKIF 392
           LF+A+++ +S++ +K      Q+HA +LR+  D   S+   L+   C     L+ A  +F
Sbjct: 26  LFSALSSATSLTHLK------QVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVF 79

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + +        +  ++     ++  + L ++  M+ +G+ VD  +   +L A   + +L 
Sbjct: 80  NLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLV 139

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
               +HG + KLG +S   V T +   YA CG I  A  +FD  K+  +D++TW+ MI  
Sbjct: 140 EGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFD--KMFHRDVVTWSIMIDG 197

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYE 571
           Y + G ++    L+ +MK  +V PD +    +L+AC  AG +  G++I    M+ +   +
Sbjct: 198 YCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVD 257

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           P  +  +++V +    G MD A  L + M  K
Sbjct: 258 PHLQ--SALVTMYASCGSMDLALNLFEKMTPK 287


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 190/528 (35%), Positives = 306/528 (57%), Gaps = 15/528 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVA 259
           WNS++   V +    ++ + +  M        D  T  +LL+    L   ++G+++H   
Sbjct: 46  WNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQV 105

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V      DL + T LL+MY+    L+ A+ LF++M  +++VVW  MIS Y ++  P E+L
Sbjct: 106 VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEAL 165

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   M   GF  D  T    VS+ + +K++  G ++H+++          + ++L++MY
Sbjct: 166 LLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMY 225

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL-EGVEVDFVTI 438
            +C DL  AR++FD +  K V +WS++I GYV +++S EAL+LF E+     +  + VTI
Sbjct: 226 AKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTI 285

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + ++ AC  +G LE  +++H Y  +       S+N ++   ++KCG I+ A  +FD   +
Sbjct: 286 LAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDS--M 343

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KD+I+WNSM++  A HG   +    +  M+ +D++PD ITF+G+LTAC +AGLV+EG+
Sbjct: 344 SYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGK 403

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +F E++  YG     EHY  MV+LL RAG + EARE ++ MP +PD  +WG +L AC++
Sbjct: 404 KLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV 463

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           ++  EL E  A  L+ +EP N G Y+LLSNIYA    WN V K+R  + ++G++KTPGCS
Sbjct: 464 YNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCS 523

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKF 726
            + I  + H F A D SHP+         I E+ IM   R+  E+LK 
Sbjct: 524 SVVIDNIAHSFLAGDCSHPE---------IAEISIM--LRQVREKLKL 560



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 202/386 (52%), Gaps = 4/386 (1%)

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAED 132
           S  +LG+   +  VF      + L + ++L+         + L  Y +M  +S   P   
Sbjct: 22  SMGSLGV-GYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRF 80

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T+P +++ C+ LL+F  G+ +H QVVK    S   +   L+  Y  C G  ++ + + +R
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAAC-GDLKSARFLFER 139

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
                K  W S+IS  ++N    ++  L+K M  +G   D  T+  L+ +  ELK L +G
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVG 199

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H      D      + +AL++MY+K   L+ A+ +FD++SDKD   W+ +I  Y ++
Sbjct: 200 MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKN 259

Query: 313 GFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
               E+L+L   +   S  R +  T +A +S+ + + ++E G+ +H  + R    + VS+
Sbjct: 260 NRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSL 319

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
           +NSLIDM+ +C D++ A++IFDS+  K ++SW+SM+ G   H    EAL  F  M+   +
Sbjct: 320 NNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDL 379

Query: 432 EVDFVTIINILPACVNIGALEHVKYL 457
           + D +T I +L AC + G ++  K L
Sbjct: 380 QPDEITFIGVLTACSHAGLVQEGKKL 405



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 172/360 (47%), Gaps = 10/360 (2%)

Query: 57  ILHG------LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +LHG      LH +L + + L++ YA  G L  ++ +F  +   N +++ +++    K  
Sbjct: 100 VLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNH 159

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
              + LL+YK+M      P E T   ++ +C+ L D   G K+H+ + ++       +G 
Sbjct: 160 CPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGS 219

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK-LMRMEGA 229
           ALV  Y KC       +   Q   KD+ + W++LI   V+N +S ++ +LF+ +      
Sbjct: 220 ALVNMYAKCGDLKTARQVFDQLSDKDVYA-WSALIFGYVKNNRSTEALQLFREVAGGSNM 278

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             +  T++ ++ +  +L  LE GR VH     +     +S+N +L+ M+SK   ++ AK 
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +FD MS KD + WN M++     G  +E+L     M  +  + D  T I  +++ S    
Sbjct: 339 IFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGL 398

Query: 350 IEWGKQMHANV-LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI 407
           ++ GK++   +    G   +   +  ++D+ C    L  AR+    +  +   + W SM+
Sbjct: 399 VQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSML 458



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 6/245 (2%)

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV-DFVTIINILPACV 446
           A  +F   +   V++W+SM++ +V  +    AL+ ++EM      V D  T  ++L  C 
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +   +  K LHG  +K  L+S   + T +   YA CG ++ A  LF  E++  ++ + W
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF--ERMGHRNKVVW 148

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            SMIS Y K+   ++   LY +M++    PD +T   L++AC     +  G  +   ++E
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL-SACKMHSETELA 625
               +      +++VN+  + G +  AR++   +  K D   W  L+    K +  TE  
Sbjct: 209 -MDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDK-DVYAWSALIFGYVKNNRSTEAL 266

Query: 626 ELTAE 630
           +L  E
Sbjct: 267 QLFRE 271


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 229/758 (30%), Positives = 374/758 (49%), Gaps = 84/758 (11%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIIL-------------------HGLHQNLILSSN 70
           ++ TH  SLL  C +   ++QIH + I                     H       L + 
Sbjct: 29  VSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTG 88

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           ++ SY   G    +  V   +T   ++ +  +++   K G  ++ + V  +M      P 
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM- 189
             T P+ +++C  L  +  G  +H  +   GF+S   V +ALV  Y +C G  E+   + 
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRC-GSLEDASLVF 207

Query: 190 --IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM------EGAEFDSGTLINLLR 241
             I RK  D    WNS+++  V+      + ELF  M M           D  +++N+L 
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILP 267

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +   LK+L   + +H  A+ +    D  V  AL+  Y+K  S+ DA  +F+ M  KD V 
Sbjct: 268 ACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVS 327

Query: 302 WNIMISAYYQSG----------------FP-------------------KESLELLMCMV 326
           WN M++ Y QSG                 P                   +E+L+    M+
Sbjct: 328 WNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI 387

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN------------GSDYQVSVHNS 374
             G   +  T I+ +S+ +++  +  G ++HA  L+             G    + V+N+
Sbjct: 388 LDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNA 447

Query: 375 LIDMYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM--KLEG 430
           LIDMY +C     AR IFDS+  + + VV+W+ MI GY  +  S +AL++FSEM  K   
Sbjct: 448 LIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYA 507

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL--NSLSSVNTAIFISYAKCGCIEM 488
           V  +  TI  IL AC ++ AL   K +H Y  +      S+  V   +   Y+KCG ++ 
Sbjct: 508 VAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDT 567

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A  +FD   +  ++ ++W SM+S Y  HG   +   ++ +M+++   PD I+FL LL AC
Sbjct: 568 ARNVFDS--MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            ++G+V++G   F  M+  Y    S EHYA +++LL R G +D+A + +++MP +P A +
Sbjct: 626 SHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVI 685

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           W  LLSAC++HS  ELAE    KL++M+ EN G+Y L+SNIYA A +W  VA++R  ++ 
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKK 745

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            G+KK PGCSW++  K    F+  D+SHP +  IY++L
Sbjct: 746 SGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLL 783


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 314/565 (55%), Gaps = 12/565 (2%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLIS 206
           G+++HA ++  G+     + + LV  Y KC   D   +    M QR        W ++IS
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNL----VSWTAMIS 79

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              QN K  ++   F  MR+ G         + +R+   L S+E+G+ +HC+A+      
Sbjct: 80  GLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGS 139

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L V + L  MYSK  ++ DA  +F++M  KD V W  MI  Y + G  +E+L     M+
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI 199

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
                 D     + + +   +K  ++G+ +H++V++ G +  + V N+L DMY +  D+ 
Sbjct: 200 DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDME 259

Query: 387 CARKIF--DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            A  +F  DS + + VVS++ +I GYV  +Q  + L +F E++ +G+E +  T  +++ A
Sbjct: 260 SASNVFGIDS-ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 318

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N  ALE    LH   MK+  +    V++ +   Y KCG +E A + FDE  I     I
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE--IGDPTEI 376

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WNS++S + +HG      K++ +M    V+P+ ITF+ LLT C +AGLVEEG   F  M
Sbjct: 377 AWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSM 436

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            ++YG  P +EHY+ +++LLGRAG + EA+E +  MPF+P+A  W   L AC++H + E+
Sbjct: 437 DKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEM 496

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            +L AEKL+ +EP+N+G  VLLSNIYA   +W  V  +R  +RD  +KK PG SW+++G 
Sbjct: 497 GKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 556

Query: 685 LVHEFWAADQSHPQADAIYTILGIL 709
             H F A D SHP+  AIY  L  L
Sbjct: 557 KTHVFGAEDWSHPRKSAIYEKLDTL 581



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 223/472 (47%), Gaps = 5/472 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA  +I  G      L+++L++ Y+  G L  + ++F+++   N + +  ++  LS+
Sbjct: 25  KQLHA-LLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             ++ + +  +  M +    P +  +   IR+C+ L     G+++H   +K G  S   V
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G  L + Y KC   F+  K   +   KD  S W ++I    + G+ E++   FK M  E 
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D   L + L +   LK+ + GR VH   V   F  D+ V  AL  MYSK   +E A 
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESAS 262

Query: 289 MLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            +F   S+ ++ V +  +I  Y ++   ++ L + + + R G   + FT  + + + +  
Sbjct: 263 NVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQ 322

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +E G Q+HA V++   D    V + L+DMY +C  L  A + FD +   T ++W+S++
Sbjct: 323 AALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLV 382

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGL 466
             +  H    +A+++F  M   GV+ + +T I++L  C + G +E  + Y +      G+
Sbjct: 383 SVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 442

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                  + +     + G ++ A E  +    +  +   W S + A   HGD
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEP-NAFGWCSFLGACRIHGD 493



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 214/428 (50%), Gaps = 12/428 (2%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+  L +++++  + K L  G+ +H + + + +     +   L++MYSK   L+ A  LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D M  ++ V W  MIS   Q+    E++     M   G     F   +A+ + +++ +IE
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GKQMH   L+ G   ++ V ++L DMY +C  +  A K+F+ +  K  VSW++MI GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
              +  EAL  F +M  E V +D   + + L AC  + A +  + +H   +KLG  S   
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDS--KDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           V  A+   Y+K G +E A  +F    IDS  ++++++  +I  Y +     +   ++ ++
Sbjct: 244 VGNALTDMYSKAGDMESASNVFG---IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAG 588
           ++  + P+  TF  L+ AC N   +E+G  +  + MK ++  +P     + +V++ G+ G
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCG 358

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI--SMEPENAGNYVLL 646
            +++A +   ++   P    W  L+S    H   + A    E+++   ++P NA  ++ L
Sbjct: 359 LLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP-NAITFISL 416

Query: 647 SNIYAAAG 654
               + AG
Sbjct: 417 LTGCSHAG 424


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 205/636 (32%), Positives = 350/636 (55%), Gaps = 8/636 (1%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           +L + +I  Y   G   L+  VF+ +   N + + +++   +  G +   ++++++M L 
Sbjct: 51  LLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLS 110

Query: 126 SMYPAEDTYPFVIRSCSCL-LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
            + P   T+  ++   S    +   G+++H+ +++ G++    V + +VE Y KC  G  
Sbjct: 111 GVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKC--GDV 168

Query: 185 NEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
            + G +    +D     W  +I+   QNG   +   L   M   G + D  T   +L + 
Sbjct: 169 EQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGAC 228

Query: 244 VELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             + +LE  +I+H   + S    +D +V TAL+++Y K  +LE+A  +F ++ +KD V W
Sbjct: 229 TAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSW 288

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           + MI+A+ QSG  K +++LLM M   G R +  T +  + +++++K  ++GK++HA +++
Sbjct: 289 SSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQ 348

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
            G    V + ++L+ MYC    +  AR IF+S + + VVSWSSMI GY  ++    AL L
Sbjct: 349 AGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSL 408

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F EM+++GV+ + VT ++ + AC  +GAL     LH     LGL+    V TA+   Y K
Sbjct: 409 FREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGK 468

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG +E A  +F   K   K+++TW S+  AY ++G  S+  KL   M+   ++PD I F+
Sbjct: 469 CGRLEEAEAVFLGMK--KKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFV 526

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L +C  AG + +G   +  M + +G  P+ EH   MV++LGRAG ++ A +L+  M F
Sbjct: 527 AILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKF 586

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
           +  +  W  LL+ACK H++T  A   AEK+  +EP+NA  YVLLS+++ AAG W    + 
Sbjct: 587 E-SSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEET 645

Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           R  +  RG+++  G S IEIG  VHEF AA    P 
Sbjct: 646 RRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPH 681



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 246/495 (49%), Gaps = 26/495 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H+ +I+  G   + ++ + +++ Y   G +  +  VF+SI  PN   +  I+   ++
Sbjct: 137 KRVHS-HIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQ 195

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV-KLGFDSFDD 167
            G   + L +  +M    + P   T+  V+ +C+ +      + +HA  +   G D    
Sbjct: 196 NGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAA 255

Query: 168 VGDALVEFYIKCDGGFENEKGM-IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           VG AL+  Y KC G  E   G+ +Q   KD+ S W+S+I+   Q+G+++ + +L  LM +
Sbjct: 256 VGTALINLYGKC-GALEEAFGVFVQIDNKDIVS-WSSMIAAFAQSGQAKSAIQLLMLMDL 313

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG   ++ T +N+L +   LK+ + G+ +H   V + +  D+ + +AL+ MY     +E 
Sbjct: 314 EGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVET 373

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +F+   ++D V W+ MI+ Y Q+  P  +L L   M   G + +  T ++A+ + + 
Sbjct: 374 ARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +  +  G Q+H  V   G D  V V  +L+++Y +C  L  A  +F  +K K +++W+S+
Sbjct: 434 VGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSI 493

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
              Y  +     +L+L   M+L+G++ D +  + IL +C   G +   K LH Y      
Sbjct: 494 AMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMS--KGLHYY------ 545

Query: 467 NSLSSVNTAIFISYAKCGC----------IEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            +L + +  I  +   CGC          +E A +L +  K +S   + W  +++A   H
Sbjct: 546 -NLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFESS--LAWMMLLTACKAH 602

Query: 517 GDWSQCFKLYTQMKQ 531
            D ++  +   ++ Q
Sbjct: 603 NDTARAARAAEKIFQ 617



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-----SDYQVSVHNSLIDMYCECED 384
            +A++    A +++ S ++ +  GK++H  V+R          +  + N +I MY  C  
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGC 65

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            + A  +FD +K + VV+W+S+I  +       +A+ LF +M L GV  D +T  +IL  
Sbjct: 66  TDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLK 125

Query: 445 CVNIGA-LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
                  L+  K +H + M+ G      V   +   Y KCG +E AG +FD   I   ++
Sbjct: 126 WSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFD--SIQDPNV 183

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
            +W  +I+AYA++G   +  +L ++M Q+ V+PD  TF  +L AC   G +EE +I+   
Sbjct: 184 FSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAA 243

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              S G +       +++NL G+ G ++EA  +   +  K D   W  +++A
Sbjct: 244 TISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNK-DIVSWSSMIAA 294



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 5/265 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q+ ++IHAR I+  G   ++ L+S L+  Y N G +  ++ +F S    + + + +++  
Sbjct: 337 QYGKEIHAR-IVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAG 395

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S+     + L ++++M +  + P   T+   I +C+ +     G ++H +V  LG D  
Sbjct: 396 YSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKD 455

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V  ALV  Y KC    E E   +  K K+L + W S+     QNG   +S +L   M 
Sbjct: 456 VPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLT-WTSIAMAYGQNGHGSRSLKLLHGME 514

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLAS 283
           ++G + D    + +L S      +  G   + + +  DF    +V     ++ +  +   
Sbjct: 515 LQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNL-MTQDFGIAPAVEHCGCMVDILGRAGK 573

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISA 308
           LE A+ L + M  +  + W ++++A
Sbjct: 574 LEAAEQLINTMKFESSLAWMMLLTA 598



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL-----NSLSSVNTAIFISY 480
           M+   ++ +      IL AC ++ AL   K +HG  M+  L        S +   +   Y
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            +CGC ++A ++FD  ++  ++++ W S+ISA+   G +     L+ +M  S V PD IT
Sbjct: 61  LRCGCTDLALDVFD--RMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRIT 118

Query: 541 FLG-LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           F   LL        ++EG+ +   + ++ GYE  +     +V + G+ G +++A   V D
Sbjct: 119 FTSILLKWSGRERNLDEGKRVHSHIMQT-GYEGDRMVMNLVVEMYGKCGDVEQAGN-VFD 176

Query: 600 MPFKPDARVWGPLLSA 615
               P+   W  +++A
Sbjct: 177 SIQDPNVFSWTIIIAA 192


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 214/683 (31%), Positives = 358/683 (52%), Gaps = 9/683 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C +   + Q+H++ + + GL  +  + + L   YA    L  + ++F         
Sbjct: 10  LLETCCSKISIPQLHSQCLKV-GLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVY 68

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQM---ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           L+  +L++    G++ +TL ++ QM   A+    P   T    ++SCS L     G+ IH
Sbjct: 69  LWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIH 128

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             + K   D+   VG AL+E Y KC    +  K   +   +D+   W S+I+   QNG  
Sbjct: 129 GFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDV-VLWTSIITGYEQNGSP 187

Query: 215 EKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           E +   F +++ +E    D  TL++   +  +L    LGR VH       F   L +  +
Sbjct: 188 ELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANS 247

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           +L++Y K  S+  A  LF +M  KD + W+ M++ Y  +G    +L L   M+      +
Sbjct: 248 ILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELN 307

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T I+A+ + ++  N+E GK +H   +  G +  ++V  +L+DMY +C     A  +F+
Sbjct: 308 RVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFN 367

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K VVSW+ +  GY     + ++L +F  M   G   D + ++ IL A   +G ++ 
Sbjct: 368 RMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQ 427

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              LH +  K G ++   +  ++   YAKC  I+ A ++F  + +  KD++TW+S+I+AY
Sbjct: 428 ALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVF--KGMRRKDVVTWSSIIAAY 485

Query: 514 AKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
             HG   +  KL+ QM   SDV+P+ +TF+ +L+AC +AGL+EEG  +F  M   Y   P
Sbjct: 486 GFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMP 545

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           + EHY  MV+LLGR G +D+A +++ +MP +    VWG LL AC++H   ++ EL A  L
Sbjct: 546 NTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNL 605

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             ++P +AG Y LLSNIY     W+  AK+RT +++   KK  G S +EI   VH F A+
Sbjct: 606 FLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIAS 665

Query: 693 DQSHPQADAIYTILGILELEIME 715
           D+ H ++D IY +L  L+  + E
Sbjct: 666 DRFHGESDQIYGMLRKLDARMKE 688


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 333/594 (56%), Gaps = 28/594 (4%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           ++ HA+++ LGF     +   L+  Y            + +  F  L  +    WNSLI+
Sbjct: 47  QQCHARILSLGFTQNPFLATKLISAY-----AIFGVPALSRLVFDSLHFKSVYLWNSLIN 101

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             V+N    ++F  F  M   G   D  TL  + +   E+  L  G+++H  ++ + F  
Sbjct: 102 GFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVL 161

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG---FPKESLELLM 323
           D+ V  +L+SMYSK     +   LFD+M +++   WN+++S Y  SG   F KE    + 
Sbjct: 162 DVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVK 221

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN---------GSDYQVSVHNS 374
            M   G + D FT    VSS+ T+ N   GK+ H   L           GS  +V +   
Sbjct: 222 DMQIEGLKPDAFT----VSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCC 277

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL-EGVEV 433
           LIDMY     ++  R++FD ++ + V +W++MI G+V +    E L LF EM++ +GVE 
Sbjct: 278 LIDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEP 337

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           + V+++++LPAC  +  L  VK +HGY+++   N+  S+  A+   Y+KCG ++ A ++F
Sbjct: 338 NKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVF 397

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           +      +D I+W+SMIS Y  HG   +   +Y +M Q   +PD+IT +G+L+AC  AGL
Sbjct: 398 EFGSF-RRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGL 456

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V+EG  I+K     Y  +P+ E  A +V++LGR+G + +A + +K MP +P   VWG ++
Sbjct: 457 VDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVV 516

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
           SA  +H  +E+ +L    L+ +EPEN  NYV LSN++A++ +W+ V+++RT ++DR L K
Sbjct: 517 SASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTK 576

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
           TPGCSWI I    H F+AAD+ HP + +IY +LG L L +M+G   S +   F+
Sbjct: 577 TPGCSWISINNTTHFFYAADKLHPCSKSIYELLGGLIL-LMKGPAVSHDFENFT 629



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 216/420 (51%), Gaps = 24/420 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ HAR + L G  QN  L++ LI +YA  G+ +LS+ VF+S+   +  L+ +++    K
Sbjct: 47  QQCHARILSL-GFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVK 105

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
              Y +    + QM  + +   + T   + + C  + D  +G+ IH + +K GF     V
Sbjct: 106 NRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIV 165

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE----- 219
            ++L+  Y KC GGF    G   + F ++  R    WN ++S    +G  +++F+     
Sbjct: 166 ANSLMSMYSKC-GGF----GECLKLFDEMPERNVGSWNVILSGYADSG--DRNFDKEVSG 218

Query: 220 LFKLMRMEGAEFDSGTLINLLR-STVELKSLELGRIVHCVAVVSDFC----KDLSVNTAL 274
             K M++EG + D+ T+ +LL      +   + GR +H   V  +       ++ +   L
Sbjct: 219 FVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCL 278

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRAD 333
           + MYS+   ++  + +FD+M  ++   W  MI+ + Q+G  +E L L   M VR G   +
Sbjct: 279 IDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPN 338

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             + ++ + + S +  +   KQ+H   +R   +  VS+ N+LIDMY +C  L+ A+++F+
Sbjct: 339 KVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFE 398

Query: 394 -SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
                +  +SWSSMI GY  H +  EA+ ++++M   G + D +TI+ +L AC   G ++
Sbjct: 399 FGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVD 458



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 196/399 (49%), Gaps = 14/399 (3%)

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           KSL+L +  H   +   F ++  + T L+S Y+       ++++FD +  K   +WN +I
Sbjct: 41  KSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLI 100

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           + + ++    E+      M   G   D +T          + ++  GK +H   L+ G  
Sbjct: 101 NGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFV 160

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV-THDQSL--EALRLF 423
             V V NSL+ MY +C       K+FD +  + V SW+ ++ GY  + D++   E     
Sbjct: 161 LDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFV 220

Query: 424 SEMKLEGVEVDFVTIINILPAC-VNIGALEHVKYLHGYSMKL----GLNSLSSVNTAIFI 478
            +M++EG++ D  T+ ++L  C  ++G  +H + LHG+ +++    G  +   +   +  
Sbjct: 221 KDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLID 280

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPD 537
            Y++   +++   +FD  +++ +++  W +MI+ + ++G   +   L+ +M+  D V P+
Sbjct: 281 MYSRSNRVDVGRRVFD--RMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPN 338

Query: 538 LITFLGLLTAC-VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
            ++ + +L AC   AGL    +I    +++ +  + S  +  +++++  + G +D A+++
Sbjct: 339 KVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCN--ALIDMYSKCGSLDHAKQV 396

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
            +   F+ D   W  ++S   +H + E A     K++ +
Sbjct: 397 FEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQL 435


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 233/774 (30%), Positives = 388/774 (50%), Gaps = 87/774 (11%)

Query: 16  VKFLRFPANQ-TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGL------------- 61
           V+FL   + + T   ++ TH  SLL  C +   ++QIH + II +GL             
Sbjct: 14  VQFLSVASAECTGRDVSPTHFASLLKECRSVNTVRQIHQK-IIAYGLLSYPASLLSVSLP 72

Query: 62  ----HQNLI---LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
               H  +    L + ++ SY   G  S +  V   +    ++ +  +++   + G  ++
Sbjct: 73  PLPSHSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDR 132

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + V  +M      P   T P+ +++C  L  + SG   H  +   GF+S   V +ALV 
Sbjct: 133 AIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVA 192

Query: 175 FYIKCDGGFENEKGM---IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM------R 225
            Y +  G  E+   +   I RK  D    WNS+++  V+      + +LF  M      +
Sbjct: 193 MYSR-SGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEK 251

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
                 D  +++N+L +   LK+L   + +H  A+ +    D  V  AL+  Y+K  S++
Sbjct: 252 ATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMK 311

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSG-------------------------------- 313
           DA  +F+ M  KD V WN M++ Y QSG                                
Sbjct: 312 DAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYA 371

Query: 314 ---FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN------- 363
              + +E+L+    M+  G   +  T I+ +S+ +++  +  G + HA  L+        
Sbjct: 372 QRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDN 431

Query: 364 -----GSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQS 416
                G    + VHN+LIDMY +C     AR IF+S+  + + VV+W+ MI GY  +  S
Sbjct: 432 DFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDS 491

Query: 417 LEALRLFSEM--KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL--NSLSSV 472
            +AL+LFSEM  K   V  +  TI  IL AC ++ +L   K +H Y  +     +S+  V
Sbjct: 492 NDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFV 551

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
              +   Y+KCG ++ A  +FD   +  ++ ++W SM+S Y  HG   +   ++ +M+++
Sbjct: 552 ANCLIDMYSKCGDVDTARNVFDS--MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA 609

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD I+FL LL AC ++G+V++G   F  M+  YG   S +HYA +++LL R+G +D+
Sbjct: 610 GFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDK 669

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A + +++MP +P A +W  LLSAC++HS  ELAE    KL+SM+ EN G+Y L+SNIYA 
Sbjct: 670 AWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYAT 729

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           A +W  VA++R  ++  G+KK PGCSW++  K    F+  D+SHP +  IY++L
Sbjct: 730 ARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLL 783


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  358 bits (919), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 361/649 (55%), Gaps = 14/649 (2%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNS--ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           + + + LI  YA  G L  ++ +F+S  +   + + + +I+      GE  + L ++++M
Sbjct: 183 VFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRM 242

Query: 123 ALQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIK 178
             Q +    +TY FV  +++C        G  IHA ++K   + F DV   +AL+  Y  
Sbjct: 243 --QEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILK--SNHFTDVYVSNALIAMYAN 298

Query: 179 CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           C    + E+      FKD  S WN+L+S  VQN     +   F+ M+  G + D  +++N
Sbjct: 299 CGQMEDAERVFKSMLFKDCVS-WNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLN 357

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           ++ ++    +L  G  VH  A+      ++ +  +L+ MY K   ++     F+ M +KD
Sbjct: 358 MIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKD 417

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            + W  +I+ Y Q+    ++L LL  +       D     + + + S +K+ +  K++H 
Sbjct: 418 LISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHG 477

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            VL+ G    + + N+++++Y E   ++ AR +F+S+ +K +VSW+SMI   V +  ++E
Sbjct: 478 YVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIE 536

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF+ +    +E D +T++++L A   + +L+  K +HG+ ++ G      +  ++  
Sbjct: 537 ALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVD 596

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YA+CG +E A  +F+   +  +D+I W SMI+A   HG       L+++M   +V PD 
Sbjct: 597 MYARCGTMENARNIFN--YVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDH 654

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL LL AC ++GLV EG+  F+ MK  Y  EP  EHYA +V+LL R+  ++EA   V+
Sbjct: 655 ITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVR 714

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP +P A VW  LL AC++HS  +L E+ A+KL+ +  EN+GNYVL+SN +AA G+WN 
Sbjct: 715 NMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWND 774

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           V ++R+ ++   LKK PGCSWIE+   +H F A D+SHPQ + IY  L 
Sbjct: 775 VEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLA 823



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 167/613 (27%), Positives = 313/613 (51%), Gaps = 35/613 (5%)

Query: 20  RFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYA 76
           RFP  Q             L LC + + L   QQ+HA ++       ++ L +  +  Y 
Sbjct: 42  RFPLQQAYSQA--------LELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYG 93

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
             G    + +VF+ ++      +  ++      G Y + + +YK+M +  +     T+P 
Sbjct: 94  KCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPC 153

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD--GGFEN--EKGMIQR 192
           V+++C    +   G +IH   VK G+  F  V +AL+  Y KC   GG     + G+++ 
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLME- 212

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             KD    WNS+IS  V  G+S ++  LF+ M+  G E ++ T ++ L++      +++G
Sbjct: 213 --KDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG 270

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R +H V + S+   D+ V+ AL++MY+    +EDA+ +F  M  KD V WN ++S   Q+
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               +++     M  SG + D  + +  +++     N+  G ++HA  +++G D  + + 
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIG 390

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           NSLIDMY +C  +      F+ +  K ++SW+++I GY  ++  L+AL L  +++LE ++
Sbjct: 391 NSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMD 450

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           VD + I +IL AC  + + + +K +HGY +K GL  +  +  AI   Y +   ++ A  +
Sbjct: 451 VDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADI-LIQNAIVNVYGELALVDYARHV 509

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E I+SKDI++W SMI+    +G   +  +L+  + ++++ PDLIT + +L A     
Sbjct: 510 F--ESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALS 567

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHY------ASMVNLLGRAGHMDEARELVKDMPFKPDA 606
            +++G       KE +G+   +  +       S+V++  R G M+ AR +   +  + D 
Sbjct: 568 SLKKG-------KEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVK-QRDL 619

Query: 607 RVWGPLLSACKMH 619
            +W  +++A  MH
Sbjct: 620 ILWTSMINANGMH 632


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 208/679 (30%), Positives = 373/679 (54%), Gaps = 20/679 (2%)

Query: 49  QQIHARYIILHGLHQNL-ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + IH   I    + ++L ++ + L+ +Y+       ++QVF+ I   +   +  ++   +
Sbjct: 81  KSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGAT 140

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G Y   +  + ++    + P E      I++C  +   + GE +HAQV+  GF S   
Sbjct: 141 ENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTF 200

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           V  +L+  Y K         G   + F  L++R    WN++IS  V NG   +++  F  
Sbjct: 201 VNTSLLGMYAKL-----GRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSF-- 253

Query: 224 MRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           +RM G E   +    I++ ++  +L  +E GR ++ +A       ++ V TAL+ M++K 
Sbjct: 254 LRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKC 313

Query: 282 ASLEDAKMLF--DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
             + ++  +F  +       + WN MIS +  SG  +E++ L + M ++  + D++T  +
Sbjct: 314 GCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCS 373

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            ++SI+ M+++E+ KQ+H  + ++GS   VS+ N+L+D Y +C +L+  RK+FD+ +   
Sbjct: 374 TLNSIADMRSLEYVKQLHGMIWKSGS-IGVSLCNALMDAYAKCGELDAMRKLFDTWEESN 432

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
            +SW++++  Y    +  +AL +FS+M+  G + + VT   +L +C ++ +LE+ + +H 
Sbjct: 433 QISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHS 492

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
            + K G      V + +   YAKCG +  A ++F  E +   D+I+W +MIS YA+HG  
Sbjct: 493 LTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVF--ESLKDPDVISWTAMISGYAQHGMA 550

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
               +L+ +M+     P+  TFL LL AC + GLV+EG   F  M+E YG  P  EHYA 
Sbjct: 551 KDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYAC 610

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           +V++LGR G + EA + +  MP +PD +VW  LL AC++H   +LA++ A+K++S  P++
Sbjct: 611 VVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDD 670

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
               VLLSN Y  AG   G   +R  ++ + ++K  G SWI IG  +H+F + DQ HPQ 
Sbjct: 671 FAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQK 730

Query: 700 DAIYTILGILELEIMEGRR 718
           D IY  L +L +E ++G++
Sbjct: 731 DDIYKTLNVL-MEKVQGKK 748


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 185/470 (39%), Positives = 281/470 (59%), Gaps = 5/470 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            LL+    L  L  G+I+H + + S F  DL +   LL++Y+K   L  A+ LFD+MS +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM--KNIEWGKQ 355
           D V W  +I+ Y Q   P+++L LL  M+R G + + FT  + + + S +   ++  G+Q
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   LR G D  V V  +++DMY  C  L  A+ IFD + +K  VSW+++I GY    Q
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +A  LFS M  E V+    T  ++L AC ++G+LE  K++H   +K G   ++ V   
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAK G IE A ++FD  ++  +D+++WNSM++ Y++HG      + + +M ++ + 
Sbjct: 260 LLDMYAKSGSIEDAKKVFD--RLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+ ITFL +LTAC +AGL++EGR  F  MK+ Y  EP   HY +MV+LLGRAGH+D A +
Sbjct: 318 PNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQ 376

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            + +MP KP A VWG LL AC+MH   EL    AE +  ++    G +VLL NIYA AG+
Sbjct: 377 FISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGR 436

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           WN  AK+R  +++ G+KK P CSW+E+   VH F A D +HPQ   I+ +
Sbjct: 437 WNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNM 486



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 194/406 (47%), Gaps = 18/406 (4%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL  C +   L +   IHA  ++      +L++ + L++ YA  G L  ++++F+ ++S
Sbjct: 20  TLLKRCTHLNKLNEGKIIHA-LLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSS 78

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL--LDFISGE 151
            + + +  ++   S+    +  LL+  +M    + P + T   ++++ S +   D + G 
Sbjct: 79  RDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H   ++ G+DS   V  A+++ Y +C    E  + +        +  WN+LI+   + 
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCH-HLEEAQLIFDVMVSKNEVSWNALIAGYARK 197

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+ +K+F LF  M  E  +    T  ++L +   + SLE G+ VH + +         V 
Sbjct: 198 GQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVG 257

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             LL MY+K  S+EDAK +FD+++ +D V WN M++ Y Q G  K +L+    M+R+   
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T +  +++ S    ++ G+     + +   + Q+S + +++D+      L+ A + 
Sbjct: 318 PNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQF 377

Query: 392 FDSVKTK-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
              +  K T   W ++          L A R+   M+L G   + +
Sbjct: 378 ISEMPIKPTAAVWGAL----------LGACRMHKNMELGGYAAECI 413


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  358 bits (918), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 208/648 (32%), Positives = 345/648 (53%), Gaps = 5/648 (0%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
            L L + ++      G    + +VF  +   +   +  ++    K G  ++ L +Y +M 
Sbjct: 122 GLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMM 181

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P   T+P V+RSC  + D+  G ++HA V++ GF    DV +AL+  Y KC    
Sbjct: 182 WAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVM 241

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              K        D  S WN++I+   +NG+     ELF  M  +  + +  T+ ++  ++
Sbjct: 242 AARKVFDSMTVMDCIS-WNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVAS 300

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L  +   + +H +AV   F  D++   +L+ MY+ L  +  A+ +F +M  +D + W 
Sbjct: 301 GLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWT 360

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS Y ++GFP ++LE+   M  +    D  T  +A+++ + + +++ G ++H      
Sbjct: 361 AMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESK 420

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    + V N++++MY + + ++ A ++F  +  K VVSWSSMI G+  + ++ EAL  F
Sbjct: 421 GFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYF 480

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M L  V+ + VT I  L AC   GAL   K +H + ++ G+     +  A+   Y KC
Sbjct: 481 RHM-LADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKC 539

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G    A   F      +KD+++WN MI+ +  HG        + QM +    PD +TF+ 
Sbjct: 540 GQTGYAWAQFCAHG--AKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVA 597

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL AC   G+V EG  +F  M E Y   P+ +HYA MV+LL RAG + EA   + +MP  
Sbjct: 598 LLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPIT 657

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PDA VWG LL+ C++H   EL EL A+ ++++EP +AG +VLL ++YA A  W+ +A++R
Sbjct: 658 PDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVR 717

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILE 710
             +R++GL    GCSW+E+  +VH F   D+SHPQ   I T+L GI E
Sbjct: 718 KTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYE 765



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 197/401 (49%), Gaps = 3/401 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA +++  G  + + + + L+  YA  G +  +++VF+S+T  + + +  ++    +
Sbjct: 209 REVHA-HVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFE 267

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE    L ++  M    + P   T   V  +   L D    +++H   VK GF      
Sbjct: 268 NGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAF 327

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L++ Y    G     + +  R        W ++IS   +NG  +K+ E++ LM +  
Sbjct: 328 CNSLIQMYASL-GMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNN 386

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+ + L +   L SL++G  +H +A    F   + V  A+L MY+K   ++ A 
Sbjct: 387 VSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAI 446

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F  M +KD V W+ MI+ +  +    E+L     M+ +  + +  T IAA+++ +   
Sbjct: 447 EVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATG 505

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  GK++HA+VLR G +Y+  + N+LID+Y +C     A   F +   K VVSW+ MI 
Sbjct: 506 ALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIA 565

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           G+V H     AL  F++M   G   D VT + +L AC   G
Sbjct: 566 GFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGG 606



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 178/402 (44%), Gaps = 12/402 (2%)

Query: 18  FLRFPANQTRPHMTATHSFSLLN-LCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           FL    ++ +P++    S ++ + L  +    +++H    +  G   ++   ++LI  YA
Sbjct: 278 FLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHG-LAVKRGFAGDVAFCNSLIQMYA 336

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           +LG++  ++ VF+ + + +++ +  ++    K G  +K L VY  M + ++ P + T   
Sbjct: 337 SLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIAS 396

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRK 193
            + +C+CL     G K+H      GF S+  V +A++E Y K    D   E  K M +  
Sbjct: 397 ALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHE-- 454

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            KD+ S W+S+I+    N ++ ++   F+ M +   + +S T I  L +     +L  G+
Sbjct: 455 -KDVVS-WSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACAATGALRSGK 511

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H   +      +  +  AL+ +Y K      A   F     KD V WNIMI+ +   G
Sbjct: 512 EIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHG 571

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM-HANVLRNGSDYQVSVH 372
               +L     MV+ G   D  T +A + + S    +  G ++ H+   +      +  +
Sbjct: 572 HGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHY 631

Query: 373 NSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTH 413
             ++D+      L  A    + +  T     W +++ G   H
Sbjct: 632 ACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIH 673


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  358 bits (918), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 216/700 (30%), Positives = 367/700 (52%), Gaps = 29/700 (4%)

Query: 38  LLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L +C   E+     QIH   ++  G   +++ +S L+D YA       S +VF  I   
Sbjct: 144 ILKVCSCLEDTSLGMQIHG-VVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 202

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           NS+ +  I+    +       L  +K+M   +   ++  Y  V+RSC+ L +   G ++H
Sbjct: 203 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 262

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F +   V  A ++ Y KCD   ++ + +  +     +  +N++I+   Q    
Sbjct: 263 AHALKSDFAADGIVRTATLDMYAKCDN-MQDAQILFDKSENLNRQSYNAMITGYSQEEHG 321

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            K+  LF  +   G  FD  +L  + R+   +K L  G  ++ +A+ S    D+ V  A 
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAA 381

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY K  +L +A  +FD+M  +D V WN +I+A+ Q+G   E+L L + M+RS    D 
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT   +V    T  ++ +G ++H++++++G     SV  SLIDMY +C  +  A KI   
Sbjct: 442 FT-FGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500

Query: 395 VKTKT--------------------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
              +T                     VSW+S+I GYV  +QS +A  LF+ M   G+  D
Sbjct: 501 FFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 560

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T   +L  C N+ +    K +H   +K  L S   +++ +   Y+KCG +  +  +F 
Sbjct: 561 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMF- 619

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            EK   +D +TWN+MI  YA HG   +  +L+ +M   +++P+ +TF+ +L AC + GL+
Sbjct: 620 -EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 678

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           ++G   F  MK  YG +P   HY++MV++LG++G +  A EL+++MPF+ D  +W  LL 
Sbjct: 679 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 738

Query: 615 ACKMH-SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            C +H +  E+AE     L+ ++P+++  Y LLSN+YA AG W  V+ +R  +R   LKK
Sbjct: 739 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 798

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            PGCSW+E+   +H F   D++HP+ + IY  LG++  E+
Sbjct: 799 EPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEM 838



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 171/642 (26%), Positives = 307/642 (47%), Gaps = 50/642 (7%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  + +I+ YA    +  +   FN +   + + + ++L    + GE  K++ V+  M
Sbjct: 70  RDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDM 129

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                     T+  +++ CSCL D   G +IH  VV++G D+      AL++ Y K    
Sbjct: 130 GRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRF 189

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            E+      R F+ +  +    W+++I+  VQN     + + FK M+   A        +
Sbjct: 190 VES-----LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYAS 244

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +LRS   L  L LG  +H  A+ SDF  D  V TA L MY+K  +++DA++LFDK  + +
Sbjct: 245 VLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLN 304

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
           R  +N MI+ Y Q     ++L L   ++ SG   D  +      + + +K +  G Q++ 
Sbjct: 305 RQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYD 364

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +++     V V N+ IDMY +C+ L  A ++FD ++ +  VSW+++I  +  + +  E
Sbjct: 365 LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYE 424

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            L LF  M    +E D  T  ++L AC   G+L +   +H   +K G+ S SSV  ++  
Sbjct: 425 TLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLID 483

Query: 479 SYAKCGCIEMA--------------GELFDEEKIDSKDI----ITWNSMISAYAKHGDWS 520
            Y+KCG IE A              G + + EK+ +K +    ++WNS+IS Y       
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 543

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVN---AGLVEE--GRIIFKEMKESYGYEPSQE 575
               L+T+M +  + PD  T+  +L  C N   AGL ++   ++I KE++    Y  S  
Sbjct: 544 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDV-YISS-- 600

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI-- 633
              ++V++  + G + ++R L+ +   + D   W  ++     H + E A    E++I  
Sbjct: 601 ---TLVDMYSKCGDLHDSR-LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILE 656

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL----RDRGL 671
           +++P    N+V   +I  A      + K   +     RD GL
Sbjct: 657 NIKP----NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGL 694



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 182/400 (45%), Gaps = 37/400 (9%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +LELG+  H   ++S F     V   LL +Y+       A M+FD+M  +D V WN MI+
Sbjct: 21  ALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMIN 80

Query: 308 -------------------------------AYYQSGFPKESLELLMCMVRSGFRADLFT 336
                                           Y Q+G   +S+E+ + M R+G   D  T
Sbjct: 81  GYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRT 140

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               +   S +++   G Q+H  V+R G D  V   ++L+DMY + +    + ++F  + 
Sbjct: 141 FAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIP 200

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K  VSWS++I G V ++    AL+ F EM+     V      ++L +C  +  L     
Sbjct: 201 EKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQ 260

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           LH +++K    +   V TA    YAKC  ++ A  LFD  K ++ +  ++N+MI+ Y++ 
Sbjct: 261 LHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFD--KSENLNRQSYNAMITGYSQE 318

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQE 575
               +   L+ ++  S +  D I+  G+  AC     + EG  I+   +K S   +    
Sbjct: 319 EHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVA 378

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           + A  +++ G+   + EA  +  +M  + DA  W  +++A
Sbjct: 379 NAA--IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 415


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 200/672 (29%), Positives = 372/672 (55%), Gaps = 18/672 (2%)

Query: 49  QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + +H   +   G+ + +L  ++ L++ Y  LG L+ ++++F+ +   N + + T+++  +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGFD 163
           + G++E    +++++     +   +   FV+ +   L   +        +H+   KLG D
Sbjct: 139 QRGDFEAAAALFRRLR----WEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHD 194

Query: 164 SFDDVGDALVEFYIKCDGGFENE---KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
               VG  L++ Y  C    + E    G++++        W +++S   +N   E +F +
Sbjct: 195 HNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKD----AVVWTAMVSCYSENDCPENAFRV 250

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  MR+ G + +   L ++L++ V L S+ LG+ +H  A+ +    +  V  ALL MY+K
Sbjct: 251 FSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAK 310

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              ++DA++ F+ +   D ++ + MIS Y QS   +++ EL + ++RS    + ++  + 
Sbjct: 311 CGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSV 370

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + + M  +++GKQ+H + ++ G +  + V N+L+D Y +C D++ + KIF S++    
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW++++ G+       EAL +F EM+   +    VT  ++L AC +  ++ H   +H  
Sbjct: 431 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 490

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
             K   N+ + +  ++  +YAKCG I  A ++F  + +  +DII+WN++IS YA HG  +
Sbjct: 491 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF--QHLMERDIISWNAIISGYALHGQAA 548

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
              +L+ +M +S+V  + ITF+ LL+ C + GLV  G  +F  M+  +G +PS EHY  +
Sbjct: 549 DALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI 608

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V LLGRAG +++A + + D+P  P A VW  LLS+C +H    L   +AEK++ +EP++ 
Sbjct: 609 VRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE 668

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLSN+YAAAG  + VA +R  +R+ G++K PG SW+EI   +H F      HP   
Sbjct: 669 TTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMR 728

Query: 701 AIYTILGILELE 712
            I  +L  L L+
Sbjct: 729 VINAMLEWLNLK 740



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 19/301 (6%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDS 74
           FLR   +   P+  +  S  +L  C N   L   +QIH   I + G   +L + + L+D 
Sbjct: 352 FLRLMRSSVLPNEYSLSS--VLQACTNMVQLDFGKQIHNHAIKI-GHESDLFVGNALMDF 408

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           YA    +  S ++F+S+   N + + TI+   S+ G  E+ L V+ +M    M   + TY
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V+R+C+         +IH  + K  F++   +G++L++ Y KC G   +   + Q   
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKC-GYIRDALKVFQHLM 527

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     WN++IS    +G++  + ELF  M     E +  T + LL           G +
Sbjct: 528 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCS-----STGLV 582

Query: 255 VHCVAVVSDFCKDLSVN------TALLSMYSKLASLEDA-KMLFDKMSDKDRVVWNIMIS 307
            H +++      D  +       T ++ +  +   L DA + + D  S    +VW  ++S
Sbjct: 583 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642

Query: 308 A 308
           +
Sbjct: 643 S 643


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 195/551 (35%), Positives = 312/551 (56%), Gaps = 35/551 (6%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           ++WN +I+   +  +   +  ++  +R    E D+    ++L++  ++   +LG+ +H  
Sbjct: 90  AQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGF 149

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            +     +D+ V  AL+ MY + A +E A+++FDKM ++D V W+ MI +  ++     +
Sbjct: 150 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMA 209

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS--LI 376
           LEL+  M     R      ++ V+  +   N+  GK MHA V+RN ++  + V  +  L+
Sbjct: 210 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL 269

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV--------------THDQSL----- 417
           DMY +C  L  AR++F+ +  KTVVSW++MI G +              T ++ +     
Sbjct: 270 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTA 329

Query: 418 ------------EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
                       +A  LF +M+  GV    VTI+++L  C   GAL+  K++H Y  K  
Sbjct: 330 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 389

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           +     +NTA+   YAKCG I  AG LF E    S+DI  WN++I+ +A HG   +   +
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIEAI--SRDICMWNAIITGFAMHGYGEEALDI 447

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M++  V+P+ ITF+GLL AC +AGLV EG+ +F++M  ++G  P  EHY  MV+LLG
Sbjct: 448 FAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLG 507

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +DEA E++K MP KP+  VWG L++AC++H   +L EL A +L+ +EPEN G  VL
Sbjct: 508 RAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVL 567

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           +SNIYAAA +W+  A +R  ++  G+KK PG S IE+   VHEF   DQSHPQ   I  +
Sbjct: 568 MSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEM 627

Query: 706 LGILELEIMEG 716
           L  +  ++ E 
Sbjct: 628 LAEMRRKLNEA 638



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 229/531 (43%), Gaps = 66/531 (12%)

Query: 25  QTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           QT P   + H  S L      +  +QIHA  I  H  H                  L + 
Sbjct: 42  QTPPTSPSQHDLSTL------EQTKQIHAHIIKTHFHHA-----------------LQIP 78

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
              F S  SP S  +  ++ + +K  +    L VY Q+            P V+++C  +
Sbjct: 79  LNDFPSGLSP-SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQV 137

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                G++IH  V+K G D    VG+AL+  Y +C    E  + +  +  +     W+++
Sbjct: 138 SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC-ACVEYARLVFDKMMERDVVSWSTM 196

Query: 205 ISLAVQNGKSEKSFELFK---LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           I    +N + + + EL +    M++  +E    +++NL   T  ++   +G+ +H   + 
Sbjct: 197 IRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR---MGKAMHAYVIR 253

Query: 262 SDFCKDLSV--NTALLSMYSKLA-------------------------------SLEDAK 288
           +   + + V   TALL MY+K                                  LE+A+
Sbjct: 254 NSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEAR 313

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LFD   ++D ++W  M+SAY Q+    ++  L   M  SG R    T ++ +S  +   
Sbjct: 314 ALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 373

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            ++ GK +H+ + +   +    ++ +L+DMY +C D+N A ++F    ++ +  W+++I 
Sbjct: 374 ALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIIT 433

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLN 467
           G+  H    EAL +F+EM+ +GV+ + +T I +L AC + G + E  K         GL 
Sbjct: 434 GFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLV 493

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                   +     + G ++ A E+     I    I+ W ++++A   H +
Sbjct: 494 PQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIV-WGALVAACRLHKN 543


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 226/668 (33%), Positives = 356/668 (53%), Gaps = 14/668 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L+Q+ AR +   G  Q+L +SS L+  +A  GL   ++ +F  +   N +    ++  L 
Sbjct: 301 LEQMLAR-VEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLV 359

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGF- 162
           K  + E    V+ +M    +    D+Y  ++ + S       G +    +HA V++ G  
Sbjct: 360 KQKQGEAAAKVFHEMK-DLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLN 418

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           D+   +G+ LV  Y K  G   +   + +   +     WNSLIS   QN  SE + E F 
Sbjct: 419 DNKVAIGNGLVNMYAK-SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFH 477

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR  G+   + TLI+ L S   L  + LG  +HC  +      D+SV+ ALL++Y++  
Sbjct: 478 RMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETG 537

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQS-GFPKESLELLMCMVRSGFRADLFTAIAAV 341
              +   +F  M + D+V WN +I A   S     ++++  + M+R G+     T I  +
Sbjct: 538 CFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINIL 597

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTV 400
           S++S++   E   Q+HA VL+       ++ N+L+  Y +C ++N   KIF  + +T+  
Sbjct: 598 SAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDE 657

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW+SMI GY+ ++   +A+ L   M  +G  +D  T   IL AC ++  LE    +H  
Sbjct: 658 VSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHAC 717

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            ++  L S   V +A+   Y+KCG I+ A   F  E +  +++ +WNSMIS YA+HG   
Sbjct: 718 GIRACLESDVVVGSALVDMYSKCGRIDYASRFF--ELMPLRNVYSWNSMISGYARHGHGE 775

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           +  KL+T+M      PD +TF+G+L+AC + G VEEG   FK M E Y   P  EH++ M
Sbjct: 776 KALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCM 835

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTAEKLISMEPE 638
           V+LLGRAG +DE  + +  MP KP+  +W  +L AC   +   TEL    AE L+ +EP+
Sbjct: 836 VDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQ 895

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           NA NYVLL+N+YA+  KW  VAK RT +++  +KK  GCSW+ +   VH F A D+ HP+
Sbjct: 896 NAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPE 955

Query: 699 ADAIYTIL 706
            D IY  L
Sbjct: 956 KDLIYDKL 963



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 146/593 (24%), Positives = 283/593 (47%), Gaps = 33/593 (5%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           HLQ I       +G   NL LS+ LI+ Y  +G L  +Q++F+ +++ N + +  ++   
Sbjct: 94  HLQSIK------YGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC------SCLLDFISGEKIHAQVVKL 160
           ++ G+ ++    ++ M      P    +   +R+C       C L    G +IH  + K 
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKL----GVQIHGLISKT 203

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
            + S   V + L+  Y  C     + + +           WNS+IS+  + G +  +++L
Sbjct: 204 RYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDL 263

Query: 221 FKLMRMEG-------AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           F  M+ EG        E+  G+LI    S+V+     L +++  V   S F +DL V++A
Sbjct: 264 FSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVE-KSGFLQDLYVSSA 322

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRA 332
           L+S +++    +DAK +F++M  ++ V  N ++    +    + + ++   M    G  +
Sbjct: 323 LVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINS 382

Query: 333 DLFTA-IAAVSSISTM-KNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCAR 389
           D +   ++A S  S + +    G+++HA+V+R G +D +V++ N L++MY +   +  A 
Sbjct: 383 DSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADAC 442

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +F+ +  K  VSW+S+I G   ++ S +A   F  M+  G      T+I+ L +C ++G
Sbjct: 443 SVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLG 502

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            +   + +H   +KLGL++  SV+ A+   YA+ GC     ++F    +   D ++WNS+
Sbjct: 503 WIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF--SLMPEYDQVSWNSV 560

Query: 510 ISAYA-KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           I A +      SQ  K + QM +       +TF+ +L+A  +  L E    I   +   Y
Sbjct: 561 IGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI-HALVLKY 619

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
                     ++++  G+ G M+E  ++   M    D   W  ++S   +H+E
Sbjct: 620 CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG-YIHNE 671



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 205/427 (48%), Gaps = 38/427 (8%)

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           E  R +H  ++   F  +L ++  L+++Y ++  L  A+ LFD+MS+++ V W  +IS Y
Sbjct: 88  EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI--STMKNIEWGKQMHANV--LRNGS 365
            Q+G P E+      MVR+GF  + +   +A+ +   S     + G Q+H  +   R GS
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 207

Query: 366 DYQVSVHNSLIDMYCECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           D  V V N LI MY  C D  N AR +FD +  +  +SW+S+I  Y     ++ A  LFS
Sbjct: 208 D--VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFS 265

Query: 425 EMKLEGV-------EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
            M+ EG+       E  F ++I    + V+ G L  ++ +     K G      V++A+ 
Sbjct: 266 SMQKEGLGFSFKPNEYTFGSLITTACSSVDFG-LCVLEQMLARVEKSGFLQDLYVSSALV 324

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             +A+ G  + A  +F  E++  +++++ N ++    K        K++ +MK      D
Sbjct: 325 SGFARFGLTDDAKNIF--EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK------D 376

Query: 538 LI-----TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS----MVNLLGRAG 588
           L+     +++ LL+A     ++EEGR   +E+          ++  +    +VN+  ++G
Sbjct: 377 LVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSG 436

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA--GNYVLL 646
            + +A  + + M  K D+  W  L+S      + E +E  AE    M    +   N+ L+
Sbjct: 437 AIADACSVFELMVEK-DSVSWNSLISGL---DQNECSEDAAESFHRMRRTGSMPSNFTLI 492

Query: 647 SNIYAAA 653
           S + + A
Sbjct: 493 STLSSCA 499


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 205/657 (31%), Positives = 346/657 (52%), Gaps = 12/657 (1%)

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
           +LI S+   G +  +   F  +T P + L+  +++  +        L  Y+ M      P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T+P V++ C+       G   HA V+KLG  +     ++LV  Y K         G 
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKL-----GLVGD 173

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTV 244
            +R F  + +R    WN+++   V NG    +   F+ M        DS  +I  L +  
Sbjct: 174 AERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACC 233

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
              +L LGR +H  A+     +D+ V T+L+ MY K  ++  A+ +F KM  +  V WN 
Sbjct: 234 LESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNC 293

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MI  Y  +  P ++ +  M M   GF+ ++ TAI  +++ +  ++  +G+ +HA V+R  
Sbjct: 294 MIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRH 353

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               V +  +L++MY +   +  + KIF  +  KT+VSW++MI  Y+  +   EA+ LF 
Sbjct: 354 FLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFL 413

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           E+  + +  D+ T+  ++PA V +G++   K +H Y +KLG    + +  A+   YA+CG
Sbjct: 414 ELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCG 473

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            I  + E+FD  K+  KD+I+WN++I  YA HG      +++ +MK S + P+  TF+ +
Sbjct: 474 NIVASREIFD--KMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSV 531

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           LTAC  +GL  EG   F  M++ YG  P  EHY  M +LLGRAG + E    +++MP  P
Sbjct: 532 LTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAP 591

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
            +R+WG LL+A +  ++ ++AE  AE++  +E  N G YV+LS++YA AG+W  V ++R+
Sbjct: 592 TSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRS 651

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESS 721
            ++++GL++T   S +E+      F   D SHPQ++ I+    IL   I E    SS
Sbjct: 652 LMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIHEFSDILSRNIGEDLDSSS 708



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 210/405 (51%), Gaps = 10/405 (2%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HA  I L GL  ++  +++L+  YA LGL+  +++VF+ + + + + + T++      G 
Sbjct: 143 HAAVIKL-GLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGM 201

Query: 112 YEKTLLVYKQM--ALQSMYPAEDTYPFVIRSCSCLLD--FISGEKIHAQVVKLGFDSFDD 167
               L  +++M  ALQ      D+   +    +C L+     G +IH   ++ G +    
Sbjct: 202 GALALACFREMNDALQV---GHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVK 258

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           VG +LV+ Y KC   F  E    +   + + + WN +I     N +   +F+ F  MR++
Sbjct: 259 VGTSLVDMYCKCGNVFFAENVFAKMPLRTVVT-WNCMIGGYALNERPVDAFDCFMQMRVD 317

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G + +  T INLL +  + +S   GR VH   V   F   + + TALL MY K+  +E +
Sbjct: 318 GFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESS 377

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +F +++DK  V WN MI+AY      +E++ L + ++      D FT    V +   +
Sbjct: 378 EKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLL 437

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            +I   KQMH+ +++ G      + N+++ MY  C ++  +R+IFD +  K V+SW+++I
Sbjct: 438 GSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTII 497

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            GY  H Q   AL +F EMK  G+E +  T +++L AC ++  LE
Sbjct: 498 IGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTAC-SVSGLE 541



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 4/306 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y I HGL Q++ + ++L+D Y   G +  ++ VF  +     + +  ++   + 
Sbjct: 242 REIHG-YAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYAL 300

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
                     + QM +        T   ++ +C+     + G  +HA VV+  F     +
Sbjct: 301 NERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVL 360

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL+E Y K      +EK   Q   K L S WN++I+  +     +++  LF  +  + 
Sbjct: 361 ETALLEMYGKVGKVESSEKIFGQITDKTLVS-WNNMIAAYMYMEMYQEAIALFLELLNQP 419

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+  ++ + V L S+   + +H   V   +     +  A++ MY++  ++  ++
Sbjct: 420 LYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASR 479

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSIST 346
            +FDKM  KD + WN +I  Y   G  K +LE+   M  SG   +   F ++    S+S 
Sbjct: 480 EIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSG 539

Query: 347 MKNIEW 352
           ++   W
Sbjct: 540 LEAEGW 545



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 103/209 (49%), Gaps = 5/209 (2%)

Query: 35  SFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
           + +LL  C   E+    + +HA Y++      +++L + L++ Y  +G +  S+++F  I
Sbjct: 326 AINLLTACAQTESSLFGRSVHA-YVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQI 384

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
           T    + +  ++        Y++ + ++ ++  Q +YP   T   V+ +   L      +
Sbjct: 385 TDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCK 444

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H+ +VKLG+     + +A++  Y +C     + +   +   KD+ S WN++I     +
Sbjct: 445 QMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVIS-WNTIIIGYAIH 503

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           G+ + + E+F  M+  G E +  T +++L
Sbjct: 504 GQGKIALEMFDEMKCSGMEPNESTFVSVL 532


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 208/670 (31%), Positives = 370/670 (55%), Gaps = 16/670 (2%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +     H+N+  ++ +I  Y   G LS ++ +F+S+    ++ +  ++   ++  ++
Sbjct: 120 ARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQF 179

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            +   ++ +M    + P   +   ++   +         ++H+ V+KLG+DS   V ++L
Sbjct: 180 REAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSL 239

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEG 228
           ++ Y K         G+  + F D+  R    +N+L++   + G + ++  LF  M+  G
Sbjct: 240 LDSYCK-----TRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVG 294

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T   +L + ++L  +E G+ VH   V  +F  ++ V  ALL  YSK   + +A 
Sbjct: 295 YRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEAS 354

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF--RADLFTAIAAVSSIST 346
            LF +M + D + +N++++ Y  +G  KESLEL   +  +GF  R   F  + ++++IS 
Sbjct: 355 KLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISL 414

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
             N++ G+Q+H+  +   +  ++ V NSL+DMY +C +   A +IF  +  ++ V W++M
Sbjct: 415 --NLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAM 472

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  YV      + L+LF EM+   +  D  T  +I+ AC ++ +L   K LH + +  G 
Sbjct: 473 ISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGY 532

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            S     +A+   YAKCG I+ A ++F E  +  ++ ++WN++ISAYA++GD     +L+
Sbjct: 533 ISNVFSGSALVDMYAKCGSIKDALQMFQEMPV--RNSVSWNALISAYAQNGDGDCTLRLF 590

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M +S ++PD ++ L +L AC + GLVEEG   F  M   Y   P +EHYAS +++L R
Sbjct: 591 EEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCR 650

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP-ENAGNYVL 645
            G  DEA +L+  MPF+PD  +W  +L++C +H   ELA+  A +L +M+   +A  YV 
Sbjct: 651 GGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVT 710

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           +SNIYAAAG+W+ V K++  +R+RG+KK P  SW+EI    H F A D++HPQ   I   
Sbjct: 711 MSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKK 770

Query: 706 LGILELEIME 715
           L  LE ++++
Sbjct: 771 LDELEEKMVK 780



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 160/626 (25%), Positives = 299/626 (47%), Gaps = 50/626 (7%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           ++Q+H+  I L G    L++S++L+DSY     L L+ Q+FN I   +S+ +  +L   S
Sbjct: 217 VRQVHSHVIKL-GYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYS 275

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           K G   + + ++ +M      P E T+  ++ +   L D   G+++H  VVK  F     
Sbjct: 276 KEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVF 335

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V +AL++FY K D   E  K   +    D  S +N L++    NG+ ++S ELFK ++  
Sbjct: 336 VANALLDFYSKHDRVVEASKLFYEMPEVDGIS-YNVLVTCYAWNGRVKESLELFKELQFT 394

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G +  +     LL       +L++GR +H   +V+D   ++ V  +L+ MY+K     +A
Sbjct: 395 GFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEA 454

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
             +F  ++ +  V W  MIS+Y Q G  ++ L+L + M R+   AD  T  + V + +++
Sbjct: 455 NRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASL 514

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            ++  GKQ+H++++ +G    V   ++L+DMY +C  +  A ++F  +  +  VSW+++I
Sbjct: 515 ASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALI 574

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGL 466
             Y  +      LRLF EM   G++ D V++++IL AC + G +E  ++Y          
Sbjct: 575 SAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQY---------F 625

Query: 467 NSLSSVNTAIFISYAKCGCIEM--AGELFDE-EKIDSK-----DIITWNSMISAYAKHGD 518
           +S++ +   +         I+M   G  FDE EK+ ++     D I W+S++++   H +
Sbjct: 626 DSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKN 685

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE------------ 566
                K   Q+    V  D   ++ +      AG  +    + K M+E            
Sbjct: 686 QELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWV 745

Query: 567 -----SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
                ++ +  + + +  M  ++ +   +DE  E +    +KPD        S+C +H+ 
Sbjct: 746 EIKHKTHVFTANDKTHPQMREIMKK---LDELEEKMVKKGYKPD--------SSCALHNV 794

Query: 622 TELAELTAEKLISMEPENAGNYVLLS 647
            E  E+  E L       A  + L+S
Sbjct: 795 DE--EVKVESLKYHSERIAIAFALIS 818



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 115/234 (49%), Gaps = 33/234 (14%)

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK--------------------------- 390
           A++++ G +      N L+  + +  DLN ARK                           
Sbjct: 90  ASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLS 149

Query: 391 ----IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
               +FDS+  +T V+W+ +I GY  ++Q  EA  LF EM   G++ D V++  +L    
Sbjct: 150 EARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFT 209

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
              ++  V+ +H + +KLG +S   V+ ++  SY K   + +A +LF++  I  +D +T+
Sbjct: 210 EFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFND--IPERDSVTF 267

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           N++++ Y+K G   +   L+ +M++   RP   TF  +LTA +    +E G+ +
Sbjct: 268 NALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQV 321



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 165/375 (44%), Gaps = 39/375 (10%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKD-------------------------------RVVW 302
           L+  + +   L  A+ LFD+M  K+                                V W
Sbjct: 107 LVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTW 166

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
            ++I  Y Q+   +E+  L + M R G   D  +    +S  +   ++   +Q+H++V++
Sbjct: 167 TMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIK 226

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
            G D  + V NSL+D YC+   L  A ++F+ +  +  V++++++ GY     + EA+ L
Sbjct: 227 LGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINL 286

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F +M+  G      T   IL A + +  +E  + +HG+ +K        V  A+   Y+K
Sbjct: 287 FFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSK 346

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              +  A +LF E  +   D I++N +++ YA +G   +  +L+ +++ +        F 
Sbjct: 347 HDRVVEASKLFYE--MPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFA 404

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA--SMVNLLGRAGHMDEARELVKDM 600
            LL+    +  ++ GR I     ++   +   E     S+V++  + G   EA  +  D+
Sbjct: 405 TLLSIAAISLNLDIGRQIH---SQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDL 461

Query: 601 PFKPDARVWGPLLSA 615
             +     W  ++S+
Sbjct: 462 AIQSSVP-WTAMISS 475


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 238/711 (33%), Positives = 364/711 (51%), Gaps = 56/711 (7%)

Query: 38  LLNLCENPQHLQQIHA------RYIILHGLHQNLILS-SNLIDSYANLGLLSLSQQVFNS 90
           L++L     HL Q+ A       Y + H    +L+L  ++L    A+L       +++ +
Sbjct: 30  LISLSSTLGHLDQLLAVSLASGHYTLDHAPASSLLLRYASLRSPPAHL------LRLYRA 83

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS----CLLD 146
              P+  L  ++L++L               +    ++P+ D++ F   + S    C   
Sbjct: 84  FPRPDRFLRNSLLRSL-------------PTLRADLLFPSPDSFSFAFAATSLASSCSRG 130

Query: 147 FISG--------EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
            IS           +HA  V  GF + + V  AL + Y     G +  K        D  
Sbjct: 131 GISPPSAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPD-T 189

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGA---EFDSGTLINLLRSTVELKSLELGRIV 255
             WN+L  LA  +G   ++ E F  +RM GA     DS TL ++L +  E+ +  +GR V
Sbjct: 190 VLWNTL--LAGLSG--SEALEAF--VRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCV 243

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H         +   V T L+S+Y+K   +E A+ LFD+M   D V +N +IS Y  +G  
Sbjct: 244 HAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMV 303

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
             S+EL   +V  G R    T +A +   S   +      +HA+V++ G D    V  +L
Sbjct: 304 GSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTAL 363

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
             +YC   D++ AR+ FD++  KT+ SW++MI GY  +  +  A+ LF +M+   V  + 
Sbjct: 364 TTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNP 423

Query: 436 VTIINILPACVNIGALEHVKYLHGY--SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           +TI + L AC  +GAL   K++H    + KL LN    V TA+   Y KCG I  A  +F
Sbjct: 424 LTISSALSACAQLGALSLGKWVHKIIANEKLELNVY--VMTALIDMYVKCGSIAEARCIF 481

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   +D+K++++WN MIS Y  HG  ++  KLY  M  + + P   TFL +L AC + GL
Sbjct: 482 DS--MDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGL 539

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPL 612
           V+EG  +F+ M   YG  P  EH   MV+LLGRAG + EA EL+ + P       +WG L
Sbjct: 540 VKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGAL 599

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L AC +H + +LA+L ++KL  +EPEN G YVLLSN+Y +  +++  A +R   + R L 
Sbjct: 600 LGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLV 659

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME-GRRESSE 722
           KTPGC+ IEIG   H F A D++HPQ+DAIY  L  L  +++E G R  +E
Sbjct: 660 KTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTE 710


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/678 (31%), Positives = 350/678 (51%), Gaps = 9/678 (1%)

Query: 37  SLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +L +LCE     +H  +        HG    L L + ++      G    + +VF  +  
Sbjct: 99  ALFHLCEWRRAAEHGLRACGHADAAHGTF-GLRLGNAMLSMLVRFGETWHAWKVFAKMPE 157

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +   +  ++    K G  E+ L +Y +M      P   T+P V+RSC  + D   G ++
Sbjct: 158 RDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREV 217

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA V++ G     DV +ALV  Y KC       K        D  S WN++I+   +N +
Sbjct: 218 HAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCIS-WNAMIAGHFENHE 276

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            E   ELF  M  +  E +  T+ ++  ++  L  L+  + +H +AV   F  D++   +
Sbjct: 277 CEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNS 336

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYS L  + +A  +F +M  +D + W  MIS Y ++GFP ++LE+   M  +    D
Sbjct: 337 LIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T  +A+++ +++  ++ G ++H      G    + V N+L++MY + + +  A ++F 
Sbjct: 397 DVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFK 456

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K V+SWSSMI G+  + ++ EAL  F  M L  V+ + VT I  L AC   G+L  
Sbjct: 457 YMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM-LADVKPNSVTFIAALAACAATGSLRC 515

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H + ++ G+ S   V  A+   Y KCG    A   F      +KD+++WN M++ +
Sbjct: 516 GKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAH--GTKDVVSWNIMLAGF 573

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
             HG        + +M ++   PD +TF+ LL  C  AG+V +G  +F  M E Y   P+
Sbjct: 574 VAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPN 633

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYA MV+LL R G + E    +  MP  PDA VWG LL+ C++H   EL EL A+ ++
Sbjct: 634 LKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVL 693

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP +AG +VLLS++YA AG W  V+K+R  +R +GL+   GCSW+E+   +H F   D
Sbjct: 694 ELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDD 753

Query: 694 QSHPQADAIYTIL-GILE 710
           +SHPQ   I  +L GI E
Sbjct: 754 ESHPQIKEINDVLDGIYE 771


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 211/669 (31%), Positives = 364/669 (54%), Gaps = 12/669 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + +HAR +   G+ Q     +N L++ YA LG L+ ++++F+ +   N + + T+++  +
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYA 124

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGFD 163
             GE+E+ L +++++  +      +   FV+ +   +L  +        IHA   KLG D
Sbjct: 125 LRGEFEEALELFRRLQRE----GHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHD 180

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               VG AL++ Y  C G   + + +           W +++S   +N   E +   F  
Sbjct: 181 RNAFVGTALIDAYSLC-GAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSK 239

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           MRM G + +   L + L++ V L S  LG+ +H  +V + +  +  V  ALL MY+K   
Sbjct: 240 MRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGD 299

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +EDA  +F+ +   D ++W+ +IS Y QS   +++ E+ + M+RS    + F+    + +
Sbjct: 300 IEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQA 359

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +  +E G+Q+H   ++ G + ++ V N+L+DMY +C ++  + +IF S++    VSW
Sbjct: 360 CANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSW 419

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GY     + +AL +F EM+   +    VT  ++L AC N  +++H   +H    K
Sbjct: 420 NTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEK 479

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
              N+ + V  ++  +YAKCG I  A ++F  E I   D+++WNS+ISAYA HG  +   
Sbjct: 480 STFNNDTIVCNSLIDTYAKCGFIRDALKVF--ESIVECDVVSWNSIISAYALHGRATNAL 537

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           +L+ +M +SD++ + +TF+ LL+ C + GLV +G  +F  M   +  +PS EHY  +V L
Sbjct: 538 ELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRL 597

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAG + +A + + D+P  P   VW  LLS+C +H    L    AEK++ +EP +   Y
Sbjct: 598 LGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTY 657

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLLSN+YAAAG  + VA  R  +R+ G+KK  G SW+EI   VH F      HP    I 
Sbjct: 658 VLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIIN 717

Query: 704 TILGILELE 712
            +L  L L+
Sbjct: 718 AMLEWLNLK 726


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 200/672 (29%), Positives = 372/672 (55%), Gaps = 18/672 (2%)

Query: 49  QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + +H   +   G+ + +L  ++ L++ Y  LG L+ ++++F+ +   N + + T+++  +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGFD 163
           + G++E    +++++     +   +   FV+ +   L   +        +H+   KLG D
Sbjct: 139 QRGDFEAAAALFRRL----RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHD 194

Query: 164 SFDDVGDALVEFYIKCDGGFENE---KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
               VG  L++ Y  C    + E    G++++        W +++S   +N   E +F +
Sbjct: 195 HNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKD----AVVWTAMVSCYSENDCPENAFRV 250

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  MR+ G + +   L ++L++ V L S+ LG+ +H  A+ +    +  V  ALL MY+K
Sbjct: 251 FSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAK 310

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              ++DA++ F+ +   D ++ + MIS Y QS   +++ EL + ++RS    + ++  + 
Sbjct: 311 CGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSV 370

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + + M  +++GKQ+H + ++ G +  + V N+L+D Y +C D++ + KIF S++    
Sbjct: 371 LQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW++++ G+       EAL +F EM+   +    VT  ++L AC +  ++ H   +H  
Sbjct: 431 VSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS 490

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
             K   N+ + +  ++  +YAKCG I  A ++F  + +  +DII+WN++IS YA HG  +
Sbjct: 491 IEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF--QHLMERDIISWNAIISGYALHGQAA 548

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
              +L+ +M +S+V  + ITF+ LL+ C + GLV  G  +F  M+  +G +PS EHY  +
Sbjct: 549 DALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI 608

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V LLGRAG +++A + + D+P  P A VW  LLS+C +H    L   +AEK++ +EP++ 
Sbjct: 609 VRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE 668

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLSN+YAAAG  + VA +R  +R+ G++K PG SW+EI   +H F      HP   
Sbjct: 669 TTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMR 728

Query: 701 AIYTILGILELE 712
            I  +L  L L+
Sbjct: 729 VINAMLEWLNLK 740



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 19/301 (6%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDS 74
           FLR   +   P+  +  S  +L  C N   L   +QIH   I + G   +L + + L+D 
Sbjct: 352 FLRLMRSSVLPNEYSLSS--VLQACTNMVQLDFGKQIHNHAIKI-GHESDLFVGNALMDF 408

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           YA    +  S ++F+S+   N + + TI+   S+ G  E+ L V+ +M    M   + TY
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V+R+C+         +IH  + K  F++   +G++L++ Y KC G   +   + Q   
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKC-GYIRDALKVFQHLM 527

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     WN++IS    +G++  + ELF  M     E +  T + LL           G +
Sbjct: 528 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCS-----STGLV 582

Query: 255 VHCVAVVSDFCKDLSVN------TALLSMYSKLASLEDA-KMLFDKMSDKDRVVWNIMIS 307
            H +++      D  +       T ++ +  +   L DA + + D  S    +VW  ++S
Sbjct: 583 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642

Query: 308 A 308
           +
Sbjct: 643 S 643


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 216/681 (31%), Positives = 381/681 (55%), Gaps = 27/681 (3%)

Query: 49  QQIHAR-YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +QIHA  Y   +G+  ++ +++ L++ Y   G      +VF+ I+  N + + +++ +L 
Sbjct: 113 KQIHAHVYKFGYGV-DSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLC 171

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL---DFISGEKIHAQVVKLG-FD 163
            F ++E  L  ++ M  + + P+  T   V  +CS        + G+++HA  ++ G  +
Sbjct: 172 SFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELN 231

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           SF  + + LV  Y K  G   + K ++   + +DL + WN+++S   QN +  ++ E  +
Sbjct: 232 SF--IINTLVAMYGKM-GKLASSKVLLGSFEGRDLVT-WNTVLSSLCQNEQFLEALEYLR 287

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKL 281
            M +EG E D  T+ ++L +   L+ L  G+ +H  A+ +    + S V +AL+ MY   
Sbjct: 288 EMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNC 347

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAIAA 340
             +     +FD M D+   +WN MI+ Y Q+ + +E+L L + M  S G  A+  T    
Sbjct: 348 KQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGV 407

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V +          + +H  V++ G D    V N+L+DMY     ++ A++IF  ++ + +
Sbjct: 408 VPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDL 467

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKL-----------EGVEVDFVTIINILPACVNIG 449
           V+W+++I GYV  ++  +AL +  +M++             ++ + +T++ ILP+C  + 
Sbjct: 468 VTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALS 527

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL   K +H Y++K  L +  +V +A+   YAKCGC++M+ ++FD+  I  +++ITWN +
Sbjct: 528 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ--IPIRNVITWNVI 585

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           + AY  HG+      +   M    V+P+ +TF+ +  AC ++G+V EG  IF  MK+ YG
Sbjct: 586 VMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYG 645

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELT 628
            EPS +HYA +V+LLGRAG + EA +L+  +P   D A  W  LL AC++H+  E+ E+ 
Sbjct: 646 VEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIA 705

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A+ LI +EP  A +YVLL+NIY++AG W    ++R  ++ +G++K PGCSWIE G  VH+
Sbjct: 706 AQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHK 765

Query: 689 FWAADQSHPQADAIYTILGIL 709
           F A D SHPQ++ +   L  L
Sbjct: 766 FVAGDSSHPQSEKLRGYLETL 786



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 152/536 (28%), Positives = 271/536 (50%), Gaps = 35/536 (6%)

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGD 170
            + +L Y  M +  + P    +P ++++ + L D   G++IHA V K G+  DS   V +
Sbjct: 75  REAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSV-TVAN 133

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
            LV  Y KC G F    G + + F  +  R    WNSLIS      K E + E F+ M  
Sbjct: 134 TLVNLYRKC-GDF----GAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 188

Query: 227 EGAEFDSGTLINLLRSTVEL---KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           E  E  S TL+++  +       + L +G+ VH   +         +NT L++MY K+  
Sbjct: 189 EDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINT-LVAMYGKMGK 247

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L  +K+L      +D V WN ++S+  Q+    E+LE L  MV  G   D FT  + + +
Sbjct: 248 LASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPA 307

Query: 344 ISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
            S ++ +  GK++HA  L+NGS D    V ++L+DMYC C+ +    ++FD +  + +  
Sbjct: 308 CSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGL 367

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           W++MI GY  ++   EAL LF EM+   G+  +  T+  ++PACV  GA    + +HG+ 
Sbjct: 368 WNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFV 427

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA---KHGD 518
           +K GL+    V  A+   Y++ G I++A  +F   K++ +D++TWN++I+ Y    +H D
Sbjct: 428 VKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFG--KMEDRDLVTWNTIITGYVFSERHED 485

Query: 519 W------SQCFKLYTQMKQSDV--RPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYG 569
                   Q  +     + S V  +P+ IT + +L +C     + +G+ I    +K +  
Sbjct: 486 ALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA 545

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            + +    +++V++  + G +  +R++   +P + +   W  ++ A  MH  ++ A
Sbjct: 546 TDVAVG--SALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQDA 598



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 218/442 (49%), Gaps = 11/442 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  L+   V++    ++   +  M + G + D+     LL++  +L+ ++LG+ +H    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 261 VSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
              +  D ++V   L+++Y K         +FD++S++++V WN +IS+       + +L
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 320 ELLMCMVRSGFRADLFTAIA---AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E   CM+        FT ++   A S+    + +  GKQ+HA  LR G +    + N+L+
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY +   L  ++ +  S + + +V+W++++     ++Q LEAL    EM LEGVE D  
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           TI ++LPAC ++  L   K LH Y++K G L+  S V +A+   Y  C  +     +FD 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFD- 358

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLV 554
             +  + I  WN+MI+ YA++    +   L+ +M++S  +  +  T  G++ ACV +G  
Sbjct: 359 -GMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAF 417

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            +   I   + +  G +  +    +++++  R G +D A+ +   M  + D   W  +++
Sbjct: 418 SKKEAIHGFVVKR-GLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTIIT 475

Query: 615 ACKMHSETELAELTAEKLISME 636
                   E A L   K+  +E
Sbjct: 476 GYVFSERHEDALLMLHKMQILE 497


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/663 (31%), Positives = 364/663 (54%), Gaps = 18/663 (2%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           +H++L+ SS+        G   L   +  ++   N + + +++    + G     L ++ 
Sbjct: 66  VHRHLVASSSSSPDAQLAGNTVLGNHLI-TMYGRNPVSWASVIAAHVQNGRAGDALGLFS 124

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK-- 178
            M        +      +R+C+ L D  +G ++HA  +K    S   V +ALV  Y K  
Sbjct: 125 SMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNG 184

Query: 179 -CDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFD 232
             D GF     + +R K KDL S W S+I+   Q G   ++ ++F+ M +EG+    EF 
Sbjct: 185 LVDDGFM----LFERIKDKDLIS-WGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFH 239

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
            G+     R+   + S E G  +H +++     +DL V  +L  MY++  +L+ A++ F 
Sbjct: 240 FGSA---FRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFY 296

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           ++   D V WN +++AY   G   E+L L   M  SG R D  T    + +      +  
Sbjct: 297 RIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYH 356

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+ +H+ +++ G D  VSV NSL+ MY  C DL+ A  +F  +K + VV+W+S++     
Sbjct: 357 GRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQ 416

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           H+   E L+LFS +      +D +++ N+L A   +G  E VK +H Y+ K GL     +
Sbjct: 417 HNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRML 476

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
           +  +  +YAKCG ++ A  LF E   +++D+ +W+S+I  YA+ G   + F L+++M+  
Sbjct: 477 SNTLIDTYAKCGSLDDAMRLF-EIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL 535

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            +RP+ +TF+G+LTAC   G V EG   +  M+  YG  P++EH + +V+LL RAG + E
Sbjct: 536 GIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTE 595

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A   +  MPF+PD  +W  LL+A KMH++ E+ +  AE +++++P ++  YVLL NIYAA
Sbjct: 596 AANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAA 655

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           +G WN  A+++  +R  G+KK+PG SW+++   +  F   D+SHP+++ IY +L ++ +E
Sbjct: 656 SGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAMLELIGME 715

Query: 713 IME 715
           +++
Sbjct: 716 MIK 718


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 225/708 (31%), Positives = 380/708 (53%), Gaps = 54/708 (7%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSL-SQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           Y I  GL  + +  + L+  YA  GL+   +   F+SI   + + +  I+   ++    E
Sbjct: 155 YAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLME 214

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS---GEKIHAQVVK---LGFDSFDD 167
               ++  M    + P   T   ++  C+   ++I+   G++IH  V++   L  D F  
Sbjct: 215 DAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVF-- 272

Query: 168 VGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMR 225
           V +ALV FY++  G  E  + + +R + +DL S WN++I+    NG+  K+ ELF +L+ 
Sbjct: 273 VWNALVSFYLRV-GRVEEAELLFRRMELRDLVS-WNAIIAGYASNGEWSKALELFHELLT 330

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSVNTALLSMYSKLASL 284
           ++  E DS TL+ ++ +  + ++L +G+++H   +     C+D SV  AL+S Y+K   +
Sbjct: 331 LDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDI 390

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           E A   F  +S +D + WN M+ A  +SG+    LELL  M+  G   D  T ++ V   
Sbjct: 391 EGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFC 450

Query: 345 STMKNIEWGKQMHANVLRN-----GSDYQVSVHNSLIDMYCECEDLNCARKIFDS----- 394
             +   +  K+ H+  +R+       D + ++ N+++D Y +C ++  A K+F S     
Sbjct: 451 VNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENR 510

Query: 395 --VKTKTVVS-------------------------WSSMIKGYVTHDQSLEALRLFSEMK 427
             V  K ++S                         W+ M++ Y  +D S +AL LF E++
Sbjct: 511 NLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQ 570

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
             G++ D VTI+++LPAC  + +++ +K  HGY+++     L  ++ A+   YAKCG I 
Sbjct: 571 AHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCFGDLH-LDGALQDVYAKCGSIG 629

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A +LF  + I +KD+I + +MI  YA HG   +    +  M +  ++PD +    +L+A
Sbjct: 630 YAFKLF--QLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSA 687

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C +AGLV+EG  IF  +++ +G + + E Y+ +V+LL R G +D+A  +V  MP + +A 
Sbjct: 688 CSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANAN 747

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           +WG LL AC+ H E EL    A++L  +E EN GNYV+LSN+YAA  +W+GV ++R  +R
Sbjct: 748 IWGTLLGACRTHHEVELGRFVADRLFKIEAENIGNYVVLSNLYAADARWDGVMEIRKLMR 807

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            R LKK  GCSWIE+ +  + F A D SHP    IY IL  L  +I E
Sbjct: 808 TRDLKKPAGCSWIEVERRKNVFVAGDTSHPHRIDIYRILSTLNGQIKE 855



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 150/551 (27%), Positives = 260/551 (47%), Gaps = 55/551 (9%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNS---LLYGTILKNLSKFGEYE-KTLLVYKQM 122
           +S  L++ YA  G L  S+++F  I S N    + +  +L   +    Y+ +TL ++++M
Sbjct: 61  VSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREM 120

Query: 123 -ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
                  P+  T   V+  C+ L D   G  ++   +K G D+    G+ALV  Y KC  
Sbjct: 121 HGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGL 180

Query: 182 GFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
             ++          KD+ S WN++IS   +N   E +F LF  M     + +  TL N+L
Sbjct: 181 VCQDAYAAFDSIDEKDVVS-WNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANIL 239

Query: 241 ---RSTVELKSLELGRIVHCVAVV-SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
               S  E  +   G+ +H   +  ++   D+ V  AL+S Y ++  +E+A++LF +M  
Sbjct: 240 PVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMEL 299

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           +D V WN +I+ Y  +G   ++LEL    +       D  T +  + + +  +N+  GK 
Sbjct: 300 RDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKM 359

Query: 356 MHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           +H  VLR+    +  SV N+L+  Y +C+D+  A + F  +  + ++SW+SM+   V   
Sbjct: 360 IHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESG 419

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL-----NSL 469
            +   L L   M  EG   D VTI++++  CVN+   + VK  H YS++  L     +  
Sbjct: 420 YNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVE 479

Query: 470 SSVNTAIFISYAKCGCIEMAGELF-------------------------DE-----EKID 499
            ++  AI  +YAKCG IE A ++F                         DE      ++ 
Sbjct: 480 PTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMP 539

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           S D+  WN M+  YA++   SQ   L+ +++   ++PD +T + LL AC     V+    
Sbjct: 540 SSDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQ---- 595

Query: 560 IFKEMKESYGY 570
               +K+ +GY
Sbjct: 596 ---LIKQCHGY 603



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 223/457 (48%), Gaps = 26/457 (5%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK--GMIQRKF 194
           +++SC+ L     G  +H  +V++G  S   V  AL+  Y KC    E++K  G I    
Sbjct: 30  ILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLFGEIGSCN 89

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMR-MEGAEF---DSGTLINLLRSTVELKSLE 250
                 WN L+S     G      E  +L R M GA +    S T   +L     L  + 
Sbjct: 90  DRDPIFWNILLS--GYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGDVY 147

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL-EDAKMLFDKMSDKDRVVWNIMISAY 309
           +GR V+C A+ S          AL+SMY+K   + +DA   FD + +KD V WN +IS +
Sbjct: 148 MGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGF 207

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAV----SSISTMKNIEWGKQMHANVLR-NG 364
            ++   +++  L   M++   + + +T +A +    +S        +GK++H  VLR N 
Sbjct: 208 AENNLMEDAFRLFSSMLKGQIKPN-YTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNE 266

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               V V N+L+  Y     +  A  +F  ++ + +VSW+++I GY ++ +  +AL LF 
Sbjct: 267 LLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFH 326

Query: 425 E-MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAK 482
           E + L+ +E D VT++ I+PAC     L   K +HGY ++   L   +SV  A+   YAK
Sbjct: 327 ELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAK 386

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           C  IE A E F    I  +D+I+WNSM+ A  + G  +   +L   M      PD +T L
Sbjct: 387 CDDIEGAYETF--FMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTIL 444

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            ++  CVN  +++E ++     KE++ Y       AS
Sbjct: 445 SVVHFCVN--VLKEDKV-----KEAHSYSIRHRLLAS 474



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 179/376 (47%), Gaps = 24/376 (6%)

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           FR D     + + S + +  I+WG+ +H +++R G     +V  +L++MY +C  L+ ++
Sbjct: 20  FRQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESK 79

Query: 390 KIFDSVKT---KTVVSWSSMIKGYV-THDQSLEALRLFSEMKLEGV-EVDFVTIINILPA 444
           K+F  + +   +  + W+ ++ GY  +     E LRLF EM      +   VT   +LP 
Sbjct: 80  KLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPV 139

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI-EMAGELFDEEKIDSKDI 503
           C  +G +   + ++ Y++K GL++ +    A+   YAKCG + + A   FD   ID KD+
Sbjct: 140 CARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFD--SIDEKDV 197

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++WN++IS +A++      F+L++ M +  ++P+  T   +L  C +     +  I +  
Sbjct: 198 VSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASF----DEYIAYWF 253

Query: 564 MKESYGYEPSQEH-------YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
            KE +GY             + ++V+   R G ++EA  L + M  + D   W  +++  
Sbjct: 254 GKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELR-DLVSWNAIIAGY 312

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN-GVAKMRTFLRDRGLKKTP 675
             + E   A     +L++++     +  LL  I A A   N  V KM   +    L+   
Sbjct: 313 ASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKM---IHGYVLRHPL 369

Query: 676 GCSWIEIGKLVHEFWA 691
            C    +G  +  F+A
Sbjct: 370 LCEDTSVGNALVSFYA 385


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 215/656 (32%), Positives = 365/656 (55%), Gaps = 26/656 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLL 117
           G  + + + + LI  Y   G L  ++ +F+ I     +++ + +I+      G   + L 
Sbjct: 175 GYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALS 234

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLD--FIS-GEKIHAQVVKLGFDSFDDV--GDAL 172
           ++++M  Q +  A +TY FV  +   + D  F+  G  IH  V+K   + F DV   +AL
Sbjct: 235 LFRRM--QEVGVASNTYTFVA-ALQGVEDPSFVKLGMGIHGAVLK--SNHFADVYVANAL 289

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEG 228
           +  Y KC G  E+      R F+ +  R    WN+L+S  VQN     +   F+ M+  G
Sbjct: 290 IAMYAKC-GRMEDAG----RVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSG 344

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + D  +++NL+ ++    +L  G+ VH  A+ +    ++ +   L+ MY+K   ++   
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMG 404

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
             F+ M +KD + W  +I+ Y Q+ F  E++ L   +   G   D     + + + S +K
Sbjct: 405 HAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLK 464

Query: 349 NIEWGKQMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           +  + +++H  V  R+ +D  + + N+++++Y E   ++ AR+ F+S+++K +VSW+SMI
Sbjct: 465 SRNFIREIHGYVFKRDLAD--IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMI 522

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
              V +   +EAL LF  +K   ++ D + II+ L A  N+ +L+  K +HG+ ++ G  
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFF 582

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               + +++   YA CG +E + ++F    +  +D+I W SMI+A   HG  ++   L+ 
Sbjct: 583 LEGPIASSLVDMYACCGTVENSRKMF--HSVKQRDLILWTSMINANGMHGCGNKAIALFK 640

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M   +V PD ITFL LL AC ++GL+ EG+  F+ MK  Y  EP  EHYA MV+LL R+
Sbjct: 641 KMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRS 700

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
             ++EA   V++MP KP + +W  LL AC +HS  EL EL A++L+  + EN+G Y L+S
Sbjct: 701 NSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALIS 760

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           NI+AA G+WN V ++R  ++  GLKK PGCSWIE+   +H F A D+SHPQ D IY
Sbjct: 761 NIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIY 816



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/596 (27%), Positives = 306/596 (51%), Gaps = 9/596 (1%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
           T   +   HS  LL+LC   + L Q    + +L   H +  L++ L+  Y   G L  + 
Sbjct: 41  TPSRLEHAHSL-LLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAV 99

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +VF+ ++      +  ++      G+Y + + +YK M +  +     T+P V+++C  L 
Sbjct: 100 KVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALG 159

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD--GGFENEKGMIQRKFKDLKSRWNS 203
           +   G +IH   VK G+  F  V +AL+  Y KC   GG       I  + +D  S WNS
Sbjct: 160 ESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVS-WNS 218

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +IS  V  G   ++  LF+ M+  G   ++ T +  L+   +   ++LG  +H   + S+
Sbjct: 219 IISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSN 278

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              D+ V  AL++MY+K   +EDA  +F+ M  +D V WN ++S   Q+    ++L    
Sbjct: 279 HFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFR 338

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M  SG + D  + +  +++     N+  GK++HA  +RNG D  + + N+L+DMY +C 
Sbjct: 339 DMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCC 398

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +      F+ +  K ++SW+++I GY  ++  LEA+ LF +++++G++VD + I ++L 
Sbjct: 399 CVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLR 458

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC  + +   ++ +HGY  K  L  +   N AI   Y + G I+ A   F  E I SKDI
Sbjct: 459 ACSGLKSRNFIREIHGYVFKRDLADIMLQN-AIVNVYGEVGHIDYARRAF--ESIRSKDI 515

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W SMI+    +G   +  +L+  +KQ++++PD I  +  L+A  N   +++G+ I   
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGF 575

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +    G+       +S+V++    G ++ +R++   +  + D  +W  +++A  MH
Sbjct: 576 LIRK-GFFLEGPIASSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 63/114 (55%), Gaps = 2/114 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  ++I  G      ++S+L+D YA  G +  S+++F+S+   + +L+ +++     
Sbjct: 570 KEIHG-FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
            G   K + ++K+M  Q++ P   T+  ++ +CS     + G++   +++K G+
Sbjct: 629 HGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFF-EIMKYGY 681


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 211/673 (31%), Positives = 371/673 (55%), Gaps = 13/673 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIH  +++  G  Q++ + ++L+  Y   G    +  +F  +   +S+ + T++    +
Sbjct: 59  KQIHG-HLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQ 117

Query: 109 FGEYEKTLLVYKQMALQ--SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            G+Y K+L+++++M  +    Y         + SC+ +     G +IH  +VK G DS +
Sbjct: 118 SGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDE 177

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
            +  AL+E Y+KC G  +N + + +R +  +L  R    WN +I   V N     + ELF
Sbjct: 178 FLVSALIEMYMKC-GDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELF 236

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M   G   DS T++ +L    +L  L +G+ +H + +      D+ V TAL+ MY K 
Sbjct: 237 VEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKC 296

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAA 340
              E +  +F +  + + V+W  ++    Q+G+P E+LE     M+  GF  D    +AA
Sbjct: 297 GDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGF-PDPVILLAA 355

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + S +     G  +H   ++ G D  V V  +L+D Y +C D+  A+++F  + T+ +
Sbjct: 356 LRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDL 415

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW+++I G+  +  + EAL+ F +M+ + ++ + VT+  IL  C ++  +   K +H Y
Sbjct: 416 VSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCY 475

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            ++    + + VN ++  +YAKCG I  +  +F  EK+  ++ +TWNS++  +  HG   
Sbjct: 476 LLRHWFETNALVNNSLISAYAKCGDIHSSRTVF--EKLPVRNEVTWNSILLGFGMHGRTD 533

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           + F  + +MK+++++PD  TF  LL++C ++G V+ G   F  M E Y  EP  E Y  M
Sbjct: 534 EMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCM 593

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGRAG++++A +L+  MP  PD R+WG LL++CK H  T+LAE+ A  +  ++  + 
Sbjct: 594 VDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSV 653

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G  VLL+N+Y  +G  N V ++RT ++  GLKK PGCSWIE+   +H F A D SH ++ 
Sbjct: 654 GYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSG 713

Query: 701 AIYTILGILELEI 713
            IY  +  L LE+
Sbjct: 714 DIYATIESLSLEM 726



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 146/561 (26%), Positives = 276/561 (49%), Gaps = 23/561 (4%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT--YPFVIRSCSCLLDFISGEKIHAQVVK 159
           ++K  ++ G +E  + VY    ++  +P E+   +P +I++   L D   G++IH  ++K
Sbjct: 9   MIKECTEDGFFEDAIRVYLDF-IECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLK 67

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
            GF     V ++L+  Y KC  G  N   M +R  +     WN++IS   Q+G   KS  
Sbjct: 68  FGFLQDIFVKNSLLGMYWKCGAG-GNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLV 126

Query: 220 LFKLMRME--GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
           +F+ M  E  G+  +    +  L S   +K L  G  +H   V      D  + +AL+ M
Sbjct: 127 MFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEM 186

Query: 278 YSKLASLEDAKMLFDKMSDKDRV-----VWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           Y K   +++A+ +F+++ D + V     VWN+MI  Y  +     +LEL + M+  G   
Sbjct: 187 YMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISP 246

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T +  +   S + ++  GKQ+H  +L  G D  V V  +L++MY +C D   + +IF
Sbjct: 247 DSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIF 306

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
              +   +V W S++     +    EAL  FSE  L+    D V ++  L AC  +    
Sbjct: 307 KRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKP 366

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
               +HG+++K+G +S   V  A+   Y KCG +E A ++F    + ++D+++WN++IS 
Sbjct: 367 RGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVF--YGLSTRDLVSWNALISG 424

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK---ESYG 569
           +A++    +  K +  M+   ++P+ +T   +L+ C +  ++    I+ KE+      + 
Sbjct: 425 FAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVM----ILCKEVHCYLLRHW 480

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
           +E +     S+++   + G +  +R + + +P + +   W  +L    MH  T+    T 
Sbjct: 481 FETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEV-TWNSILLGFGMHGRTDEMFATF 539

Query: 630 EKL--ISMEPENAGNYVLLSN 648
           EK+   +++P++     LLS+
Sbjct: 540 EKMKEANIKPDHGTFTSLLSS 560


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 207/648 (31%), Positives = 338/648 (52%), Gaps = 9/648 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C     L+ +HAR ++ HGL + L   + L+  YA LG L+ +++V +    P+  
Sbjct: 29  LLPACATLPSLRALHAR-LLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPY 87

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY--PFVIRSCSCLLDFISGEKIHA 155
            Y   L   +  G +   L +++ M  +     +D       +++     DF  G ++H 
Sbjct: 88  TYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHC 147

Query: 156 QVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             VK G  D F  V + LV+ Y K  G  EN + +  R        W S++S  +QNG +
Sbjct: 148 NAVKAGGADGF--VMNCLVDMYAKA-GDLENARKVFDRILGRNVVSWTSMLSGCLQNGFA 204

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E+   LF  MR E       T+ ++L +   L SL  GR VH   +      +  +  A+
Sbjct: 205 EEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAV 264

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L MY K   +EDA+ LFD++   D V+W  MI  Y Q+G P ++L L           + 
Sbjct: 265 LDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNS 324

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T    +S+ + ++N+  G+ +HA  ++        V N+L+DMY +C+ L+ A  IF  
Sbjct: 325 VTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGR 384

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  K VV+W+S+I GYV +D   EAL LFS+M+++G   D ++I+N L ACV +G L   
Sbjct: 385 ISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIG 444

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K  H Y++K    S   VNTA+   Y KC  +  A  +F E  +  ++ +TW +MI  Y 
Sbjct: 445 KCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSE--MSERNSVTWGAMIGGYG 502

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
             GD +    L  +M + +++P+ + F  +L+ C + G+V  G++ F  M + +   PS 
Sbjct: 503 MQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSM 562

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           +HYA MV++L RAG+++EA E ++ MP   D  +WG  L  CK+HS  E  E    +++ 
Sbjct: 563 KHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMV 622

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           + P+    YVL+SN+Y + G+W+    +R  +++RGL K PGCS + +
Sbjct: 623 LHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGLVKLPGCSSVGL 670


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 369/674 (54%), Gaps = 54/674 (8%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           +++ C+  + L+ IHAR +I   +  +  + + L+  Y+  G    + +VF+ IT PN+ 
Sbjct: 8   IIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAY 67

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L+ +++    +  +Y++   ++ QM  + +     T   V+++ + L  F  G+ ++  V
Sbjct: 68  LWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFV 127

Query: 158 VKLGFDSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
           +K GF +FD  V +++++ +++C       +   +   KD+ S WN +IS    N + + 
Sbjct: 128 LKYGF-AFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVS-WNMMISGYGNNDRVDI 185

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           + + F  M     E +  +  +++   V+   +   +++     V    KDL+    ++S
Sbjct: 186 ARKFFDRM----PERNVVSWTSMICGYVKAGDMAEAQVLFDSMPV----KDLASWNVMVS 237

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
            Y  +    +A+++F KM   D   WNIMIS + ++G                   +L +
Sbjct: 238 GYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAG-------------------ELES 278

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
           A      +     I WG                     ++D Y +  D N AR +FD + 
Sbjct: 279 AKDFFDRMPNKNVISWG--------------------IMLDGYIKNGDTNGARCLFDQMP 318

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK- 455
            K +V+WS+MI GY  + Q L+AL LF   K + ++ D   I+ I+ AC  +G ++  + 
Sbjct: 319 MKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAES 378

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H Y     L+ L  V T++   YAKCG IE A ++F  E    KD++ +++MI+A A 
Sbjct: 379 IIHNYVGPSLLSDLR-VFTSLIDMYAKCGSIEKALQMF--EMAHPKDLLCYSTMIAALAN 435

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG       L+ +M++++++PD +TFLG+LTAC + GLV+EGR  FK+M E +G +PS++
Sbjct: 436 HGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEK 495

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HYA +V+LLGR G ++EA  L+++MP  P + VWG LL+AC++H   +LAE+ A +L  +
Sbjct: 496 HYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKI 555

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP+N+GNY+LLSNIYAAAG+W  VAK+R  +R+  ++K  G SWIE+  +VHEF   D S
Sbjct: 556 EPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMS 615

Query: 696 HPQADAIYTILGIL 709
           H  +D+I  IL +L
Sbjct: 616 HTDSDSISLILYLL 629


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 211/673 (31%), Positives = 372/673 (55%), Gaps = 9/673 (1%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C    +L   +++H R II +GL  + ++ ++L+  Y +LG LS +++VF+++T+
Sbjct: 104 SVLRACAGFGNLDVGEEVHGR-IIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTT 162

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + +I+      GE  + L +++ +  Q +     T   +  +C  L      + +
Sbjct: 163 RDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSV 222

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  +++   ++   + DALV  Y +CD  F + + +    F    + W ++IS   ++  
Sbjct: 223 HGCIIRQRIETRGPLNDALVLMYSRCDD-FSSAERIFSNMFNRSIASWTAMISCYNRSRW 281

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            +++ ++F  M       ++ T++ +L S      L  G+ VHC AV      D S+  A
Sbjct: 282 FKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPA 341

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+  Y++   L   + +   +  ++ + WN++IS Y   G  KE+L + + M R G   D
Sbjct: 342 LIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPD 401

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            F+  +++S+ + +  +  G Q+H   ++     +  V NSLIDMY +C  ++ A  IFD
Sbjct: 402 SFSLSSSISACANVGLLWLGHQIHGYAIKRHILDEF-VQNSLIDMYSKCGHVDLAYLIFD 460

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +++K+VV+W+SMI G+     SLEA+RLF +M L  ++++ VT +  + AC ++G LE 
Sbjct: 461 RIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEK 520

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K+LH   +  G+     ++TA+   YAKCG + +A  +FD   +  + +++W++MI   
Sbjct: 521 GKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFD--SMSERSVVSWSAMIGGC 578

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
             HGD      L+ +M Q +++P+ ITF+ +L+AC ++G VEEG+  F  MK ++  EP+
Sbjct: 579 GMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMK-NFEVEPN 637

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EH+A MV+LL RAG +DEA  ++  MPF  +A +WG LL+ C++H   ++       L+
Sbjct: 638 LEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERDLL 697

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            M  ++ G Y LLSNIYA  G W+   K+R+ ++  GLKK PG S IE+ K V+ F A D
Sbjct: 698 DMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVYRFGAGD 757

Query: 694 QSHPQADAIYTIL 706
            SH Q   I T L
Sbjct: 758 VSHWQVKEINTFL 770



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 157/620 (25%), Positives = 316/620 (50%), Gaps = 19/620 (3%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L   C + + L  +H+ ++++ GLH +   S+ LI+SY+ +G L  S+ VF +  +P+S 
Sbjct: 7   LFRSCTSLRPLTLLHS-HLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSF 65

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           ++  ++K         + + +Y +M  + +  ++  +  V+R+C+   +   GE++H ++
Sbjct: 66  MWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRI 125

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGK 213
           +K G D    V  +L+  Y    G   N K    + F ++ +R    W+S+IS  V NG+
Sbjct: 126 IKYGLDVDHVVETSLLGMYGDL-GCLSNAK----KVFDNMTTRDLVSWSSIISCYVDNGE 180

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           S +  E+F+L+  +  E DS T++++  +  EL  L L + VH   +         +N A
Sbjct: 181 SSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDA 240

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MYS+      A+ +F  M ++    W  MIS Y +S + K++L++ + M+      +
Sbjct: 241 LVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPN 300

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T +A +SS +    +  GK +H   +++      S+  +LI+ Y +   L+   K+  
Sbjct: 301 AVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLH 360

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           ++  + ++SW+ +I  Y +     EAL +F +M+ +G   D  ++ + + AC N+G L  
Sbjct: 361 TIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWL 420

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              +HGY++K  +     V  ++   Y+KCG +++A  +FD  +I SK ++ WNSMI  +
Sbjct: 421 GHQIHGYAIKRHILD-EFVQNSLIDMYSKCGHVDLAYLIFD--RIQSKSVVAWNSMICGF 477

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           ++ G+  +  +L+ QM  + +  + +TFL  + AC + G +E+G+ +  ++  +YG +  
Sbjct: 478 SQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLI-AYGVKKD 536

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA-ELTAEKL 632
                +++++  + G +  A  +   M  +     W  ++  C MH + + A  L AE +
Sbjct: 537 LFIDTALIDMYAKCGDLRIAHRVFDSMS-ERSVVSWSAMIGGCGMHGDIDAAISLFAEMI 595

Query: 633 ISMEPENAGNYVLLSNIYAA 652
              + E   N +   NI +A
Sbjct: 596 ---QREMKPNDITFMNILSA 612



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 218/461 (47%), Gaps = 10/461 (2%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  + RSC+ L        +H+ ++  G          L+E Y +  G  ++ K ++   
Sbjct: 4   YMPLFRSCTSLRPL---TLLHSHLLVTGLHHDPQASTKLIESYSQI-GCLQSSK-LVFET 58

Query: 194 FKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           F++  S  W  LI   V +    ++  L+  M  +          ++LR+     +L++G
Sbjct: 59  FQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVG 118

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             VH   +      D  V T+LL MY  L  L +AK +FD M+ +D V W+ +IS Y  +
Sbjct: 119 EEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDN 178

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G   E LE+   +V      D  T ++   +   +  +   K +H  ++R   + +  ++
Sbjct: 179 GESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLN 238

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           ++L+ MY  C+D + A +IF ++  +++ SW++MI  Y       +AL++F EM    V 
Sbjct: 239 DALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVA 298

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            + VTI+ +L +C     L   K +H Y++K       S+  A+   YA+ G +    ++
Sbjct: 299 PNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKV 358

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
                I  ++II+WN +IS YA  G + +   ++ QM++    PD  +    ++AC N G
Sbjct: 359 L--HTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVG 416

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           L+  G  I     + +  +   ++  S++++  + GH+D A
Sbjct: 417 LLWLGHQIHGYAIKRHILDEFVQN--SLIDMYSKCGHVDLA 455


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 181/464 (39%), Positives = 287/464 (61%), Gaps = 3/464 (0%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L     L+ L+ GR +H     S F  DL +   +L+MY+K  SLE+A+ LFDKM  KD
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V W ++IS Y QSG   E+L L   M+  GF+ + FT  + + +  T  +   G+Q+HA
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHA 230

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             L+ G D  V V +SL+DMY     +  A+ IF+S+  K VVSW+++I G+    +   
Sbjct: 231 FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEH 290

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            +RLF +M  +G E    T  ++  AC + G+LE  K++H + +K G   ++ +   +  
Sbjct: 291 VMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLID 350

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAK G I+ A ++F   ++  +DI++WNS+IS YA+HG  ++  +L+ QM ++ V+P+ 
Sbjct: 351 MYAKSGSIKDAKKVF--RRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNE 408

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL +LTAC ++GL++EG+  F+ MK+ +  E    H+ ++V+LLGRAG ++EA + ++
Sbjct: 409 ITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIE 467

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP KP A VWG LL +C+MH   +L    AE++  ++P ++G +VLLSNIYA+AG+ + 
Sbjct: 468 EMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSD 527

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            AK+R  +++ G+KK P CSW+EI   VH F A D SHP  + I
Sbjct: 528 AAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEI 571



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           S+ P    Y  ++  C+ L     G  IHA +    F+    + + ++  Y KC G  E 
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC-GSLEE 158

Query: 186 EKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            + +  +   KD+ S W  LIS   Q+G++ ++  LF  M   G + +  TL +LL+++ 
Sbjct: 159 AQDLFDKMPTKDMVS-WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG 217

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
              S   GR +H  ++   +  ++ V ++LL MY++ A + +AK++F+ ++ K+ V WN 
Sbjct: 218 TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA 277

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I+ + + G  +  + L + M+R GF    FT  +  ++ ++  ++E GK +HA+V+++G
Sbjct: 278 LIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSG 337

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                 + N+LIDMY +   +  A+K+F  +  + +VSW+S+I GY  H    EAL+LF 
Sbjct: 338 GQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFE 397

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +M    V+ + +T +++L AC + G L+  +Y      K  + +  + +  +     + G
Sbjct: 398 QMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAG 457

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLG 543
            +  A +  +E  I     + W +++ +   H +      +Y   +  ++ P D    + 
Sbjct: 458 RLNEANKFIEEMPIKPTAAV-WGALLGSCRMHKNMD--LGVYAAEQIFELDPHDSGPHVL 514

Query: 544 LLTACVNAGLVEEGRIIFKEMKES 567
           L     +AG + +   + K MKES
Sbjct: 515 LSNIYASAGRLSDAAKVRKMMKES 538



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 182/374 (48%), Gaps = 6/374 (1%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +LN C   + L+Q   IHA +I       +L+L + +++ YA  G L  +Q +F+ + + 
Sbjct: 111 MLNKCTYLRKLKQGRAIHA-HIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTK 169

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   S+ G+  + L ++ +M      P E T   ++++         G ++H
Sbjct: 170 DMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLH 229

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K G+D    VG +L++ Y +     E +        K++ S WN+LI+   + G+ 
Sbjct: 230 AFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS-WNALIAGHARKGEG 288

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E    LF  M  +G E    T  ++  +     SLE G+ VH   + S       +   L
Sbjct: 289 EHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTL 348

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY+K  S++DAK +F ++  +D V WN +IS Y Q G   E+L+L   M+++  + + 
Sbjct: 349 IDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNE 408

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T ++ +++ S    ++ G+     + ++  + QV+ H +++D+      LN A K  + 
Sbjct: 409 ITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEE 468

Query: 395 VKTK-TVVSWSSMI 407
           +  K T   W +++
Sbjct: 469 MPIKPTAAVWGALL 482



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 125/264 (47%), Gaps = 3/264 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
            H +Q+HA + + +G   N+ + S+L+D YA    +  ++ +FNS+ + N + +  ++  
Sbjct: 223 HHGRQLHA-FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++ GE E  + ++ QM  Q   P   TY  V  +C+       G+ +HA V+K G    
Sbjct: 282 HARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPI 341

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             +G+ L++ Y K  G  ++ K + +R  K     WNS+IS   Q+G   ++ +LF+ M 
Sbjct: 342 AYIGNTLIDMYAK-SGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQML 400

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
               + +  T +++L +      L+ G+    +         ++ +  ++ +  +   L 
Sbjct: 401 KAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLN 460

Query: 286 DAKMLFDKMSDKDR-VVWNIMISA 308
           +A    ++M  K    VW  ++ +
Sbjct: 461 EANKFIEEMPIKPTAAVWGALLGS 484


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 222/694 (31%), Positives = 372/694 (53%), Gaps = 10/694 (1%)

Query: 30  MTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           M ++   SLL  C N + L+Q   +H R I+  GL  +++L  +LI+ Y        ++ 
Sbjct: 1   MESSKLLSLLRECTNTKSLRQAKLVHQR-ILTVGLRSDVVLCKSLINVYFACKDHCSARL 59

Query: 87  VFNSI-TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCL 144
           VF +I    +  ++ +++   SK   +  TL V+K++    +  P   TYP VI++   L
Sbjct: 60  VFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGAL 119

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                G  IH  VVK G      V  +LV  Y K +   ++ +   +   +D+ S WN++
Sbjct: 120 GREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVAS-WNTV 178

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           IS   Q G +EK+ ELF  M     E +S ++   + +   L  LE G+ +H   +  +F
Sbjct: 179 ISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEF 238

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D  VN+AL+ MY +   LE A+ +F +M  K  V WN MI  Y   G  K  +ELL  
Sbjct: 239 ELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNR 298

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+  G R    T  + + + S  +N+  GK +H  V+R+  D  + ++ SLID+Y +C +
Sbjct: 299 MIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGE 358

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  A  +F   +   V SW+ MI GYV+     +A+ ++ +M   GV+ D VT  ++L  
Sbjct: 359 VKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLST 418

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C  + ALE  K +H    +  L +   + +A+   Y+KCG ++ A  +F+   I  KD++
Sbjct: 419 CSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNS--IPKKDVV 476

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +W  MISAY  HG   +    + +M++  V+PD +TFL +L+AC +AGL++EG   F +M
Sbjct: 477 SWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQM 536

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETE 623
           +  YG E S E Y+ ++++LGRAG + EA  +++  P  + +A +   L  AC +H +  
Sbjct: 537 RSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHL 596

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L    A+ L+   P++A  Y +L N+YA+   W+   ++R  +++ G++K PGCSWIE+ 
Sbjct: 597 LGYTIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEMN 656

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEIMEGR 717
           + V  F+A D+SHPQA+ +Y  L +L   +  G+
Sbjct: 657 EKVCHFFAEDRSHPQAENVYECLALLSGHMEAGQ 690


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 190/499 (38%), Positives = 296/499 (59%), Gaps = 4/499 (0%)

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           + E +  M+  G   ++ T   +  +   L  L  G+  H   + S  C D  V  +L++
Sbjct: 110 TIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLIT 169

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MYS+   L  A+ +FD++S+KD V WN MIS Y + G+  +++ L   M  +GF  D  T
Sbjct: 170 MYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMT 229

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            ++ + +   + ++  G  +   V+ N  D    V ++LI MY +C DL+ AR++FD + 
Sbjct: 230 LVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMV 289

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K VV+W++MI GY  +  S EA+ LFS M+  GV  D +T++ +L AC +IGAL+  K+
Sbjct: 290 KKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKW 349

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           L  Y+ + GL +   V+TA+   YAKCG ++ A  +F  E +  K+ ++WN+MISA A H
Sbjct: 350 LDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVF--EDMPQKNEVSWNAMISALAFH 407

Query: 517 GDWSQCFKLYTQMKQSD--VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           G   +   L+ +M +    VRP+ I+F+G+L+ACV+AGLV+EGR +F  M  S+G  P  
Sbjct: 408 GRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKI 467

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EH++ MV+LL RAGH+ EA + ++ MP KPD  V G LL AC+     +++E     L+ 
Sbjct: 468 EHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLE 527

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           MEP N+GNY++ S I+A   +W+  A+MR  +R RG+ KTPGCSWIEI   VHEF A D 
Sbjct: 528 MEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFHAGDV 587

Query: 695 SHPQADAIYTILGILELEI 713
            H  +  +  ++ +L  E+
Sbjct: 588 LHFISQDMCQVINLLNEEM 606



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 217/431 (50%), Gaps = 21/431 (4%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSITS 93
            SLL  C + + LQQIH + II + +H+   L    ID   + N  LL      F+ I  
Sbjct: 35  LSLLKQCTSTKSLQQIHTQMII-NAIHKPNFLLHRFIDLKDFNNASLL------FSQIPY 87

Query: 94  PNSLLYGTILKNLSK-FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           PN   +  +++ L+  + ++  T+  Y QM    + P   TYPFV  +C+ LL    G+ 
Sbjct: 88  PNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQC 147

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
            H+ V+K G  +   V  +L+  Y +C      E G  +R F ++  +    WNS+IS  
Sbjct: 148 AHSGVLKSGLCADGHVRHSLITMYSRC-----GELGCARRVFDEISEKDLVSWNSMISGY 202

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            + G +  +  LF  MR  G E D  TL+++L +  +L  L LG  +    V ++   + 
Sbjct: 203 SRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNS 262

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V +AL+ MY K   L  A+ +FD+M  KD V WN MI+ Y Q+G   E++ L   M  S
Sbjct: 263 FVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRES 322

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   D  T +  +S+ +++  +++GK +       G    + V  +LIDMY +C  L+ A
Sbjct: 323 GVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDA 382

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVDFVTIINILPACV 446
            ++F+ +  K  VSW++MI     H +  E+L LF  M  EG  V  + ++ I +L ACV
Sbjct: 383 LRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACV 442

Query: 447 NIGALEHVKYL 457
           + G ++  + L
Sbjct: 443 HAGLVDEGRQL 453


>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
 gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
          Length = 733

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 245/737 (33%), Positives = 370/737 (50%), Gaps = 78/737 (10%)

Query: 11  LQSGHVKFLR-FPANQTRPHMTATHSFS-LLN------LCENPQHLQQIHARY--IILHG 60
           L+  H  F R FP+    P   + HS S  LN      L    Q LQ +H  +  II  G
Sbjct: 4   LKPAHHLFRRLFPS----PFQISYHSSSNYLNCHIDSFLSNQTQTLQSLHKSHALIITTG 59

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
              N+ +SS LI  YA+      S  VF+S    ++ L+ +I+K+    G Y K    Y 
Sbjct: 60  NANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNGNYFKAFDFYI 119

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-FDSFDDVGDALVEFYIKC 179
           QM   +  P + T P ++ +C+ LL    G+ IH  V K G F     VG + V  Y KC
Sbjct: 120 QMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKC 179

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM---EGAEFDSGTL 236
            G  E+   M           W +L+   V N  SEK  E    MR    +G + +S TL
Sbjct: 180 -GVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTL 238

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
               ++   L ++  GR +H +AV +       V ++LLSMYSK  ++E+A   F ++ D
Sbjct: 239 EGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVD 298

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCM------------------------------- 325
           KD   W  +I    + GF  E L L   M                               
Sbjct: 299 KDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAF 358

Query: 326 ----VRSGFRAD------LFTAIAAVSSISTMKNI-----EWGKQ---------MHANVL 361
               VR  +  D      L +      +++  + +     EW K+         +H  ++
Sbjct: 359 HGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYII 418

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           +N  D  VS+ NSLIDMY +  +L+ A K+F   + + VV+W+++I  Y       EA+ 
Sbjct: 419 KNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQ-RDVVTWNTLISSYTHSGHYAEAIT 477

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF EM  E +  +  T++ +L AC ++ +LE  K +H Y  + G     S+ TA+   YA
Sbjct: 478 LFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYA 537

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E + ELF+  K   KD+I+WN MIS Y  HGD +   +++ QM+QS+V+P+ ITF
Sbjct: 538 KCGQLEQSRELFNSMK--EKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITF 595

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           L LL+AC +AG V+EG+ +F  M + Y  +P+ +H+A M +LLGR+G++ EA +LV+ MP
Sbjct: 596 LSLLSACTHAGYVDEGKQLFDRM-QYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMP 654

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
             PD  VWG LLSACK+H+E E+    A+  I  +PEN G Y++LSN+Y + GKW+   +
Sbjct: 655 ICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMGKWDEAER 714

Query: 662 MRTFLRDRGLKKTPGCS 678
            R  +++RG+ K  G S
Sbjct: 715 ARELMKERGIGKRAGWS 731


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 215/699 (30%), Positives = 369/699 (52%), Gaps = 16/699 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +L+  C N + L+   +IH  +I+      +L+L +++++ Y   G L  +++ F+++  
Sbjct: 85  NLILACTNVRSLKYGKRIH-DHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQL 143

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  ++   S+ G+    +++Y QM     +P + T+  +I++C    D   G ++
Sbjct: 144 RSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQL 203

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  V+K G+D      +AL+  Y K                KDL S W S+I+   Q G 
Sbjct: 204 HGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLIS-WASMITGFTQLGY 262

Query: 214 SEKSFELFKLMRMEGA----EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
             ++  LF+ M  +G     EF  G++ +  RS   L   E GR +  +       +++ 
Sbjct: 263 EIEALYLFRDMFRQGVYQPNEFIFGSVFSACRS---LLKPEFGRQIQGMCAKFGLGRNVF 319

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
              +L  MY+K   L  AK  F ++   D V WN +I+A   S    E++     M+  G
Sbjct: 320 AGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSDV-NEAIYFFCQMIHMG 378

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D  T +  + +  +   +  G Q+H+ +++ G D   +V NSL+ MY +C +L+ A 
Sbjct: 379 LMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAF 438

Query: 390 KIF-DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
            +F D  +   +VSW++++     H Q  EA RLF  M     + D +TI  IL  C  +
Sbjct: 439 NVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAEL 498

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            +LE    +H +S+K GL    SV+  +   YAKCG ++ A  +FD  +  + DI++W+S
Sbjct: 499 VSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQ--NPDIVSWSS 556

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +I  YA+ G   +   L+  M+   V+P+ +T+LG+L+AC + GLVEEG  ++  M+   
Sbjct: 557 LIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIEL 616

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G  P++EH + MV+LL RAG + EA   +K   F PD  +W  LL++CK H   ++AE  
Sbjct: 617 GIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERA 676

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AE ++ ++P N+   VLLSNI+A+AG W  VA++R  ++  G++K PG SWIE+   +H 
Sbjct: 677 AENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQIHV 736

Query: 689 FWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
           F++ D SHPQ   IYT+L  L L++++   +  + L  S
Sbjct: 737 FFSEDSSHPQRGNIYTMLEDLWLQMLDDGYDPCQRLDIS 775



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 217/422 (51%), Gaps = 6/422 (1%)

Query: 202 NSLISLAVQNGKSEKSFELFKL-MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           NS I+L  +     ++ + F   ++    + +  T +NL+ +   ++SL+ G+ +H   +
Sbjct: 48  NSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHIL 107

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S+   DL +   +L+MY K  SL+DA+  FD M  +  V W IMIS Y Q+G   +++ 
Sbjct: 108 KSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAII 167

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           + + M+RSG+  D  T  + + +     +I+ G Q+H +V+++G D+ +   N+LI MY 
Sbjct: 168 MYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYT 227

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVDFVTII 439
           +   +  A  +F  + TK ++SW+SMI G+      +EAL LF +M  +GV + +     
Sbjct: 228 KFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFG 287

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++  AC ++   E  + + G   K GL        ++   YAK G +  A   F   +I+
Sbjct: 288 SVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAF--YQIE 345

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           S D+++WN++I+A A + D ++    + QM    + PD ITFL LL AC +   + +G  
Sbjct: 346 SPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQ 404

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           I   + +  G +       S++ +  +  ++ +A  + KD+    +   W  +LSAC  H
Sbjct: 405 IHSYIIK-MGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQH 463

Query: 620 SE 621
            +
Sbjct: 464 KQ 465


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 308/548 (56%), Gaps = 35/548 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG--TLINLLRSTVELKSLELGRIVHCV 258
           WNSLIS     G   +S + + LM      F+    T   LL    +   ++LGR +H  
Sbjct: 109 WNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGH 168

Query: 259 AVVSDFCKDLSVNTALLSMYSKLA-------------------------------SLEDA 287
            V   F   + V + L+ MYSK+                                 +ED+
Sbjct: 169 VVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDS 228

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K LF +M ++D + W  MI+ + Q+G  ++++++   M     + D +T  + +++   +
Sbjct: 229 KRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGV 288

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             ++ GKQ+HA ++R      + V ++L+DMYC+C+++  A  +F  +  K VVSW++M+
Sbjct: 289 MALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAML 348

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY  +  S EA++ FS+M+  G+E D  T+ +++ +C N+ +LE     H  ++  GL 
Sbjct: 349 VGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLI 408

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S  +V+ A+   Y KCG IE +  LF+E  I  KD +TW +++S YA+ G  ++   L+ 
Sbjct: 409 SFITVSNALVTLYGKCGSIEDSHRLFNE--ISFKDEVTWTALVSGYAQFGKANETIGLFE 466

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            M    ++PD +TF+G+L+AC  AGLVE+G  IF+ M   +G  P Q+HY  M++L  RA
Sbjct: 467 SMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRA 526

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++EAR  +  MPF PDA  W  LLS+C+ +   ++ +  AE L+ ++P N  +YVLLS
Sbjct: 527 GRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLS 586

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           ++YAA GKW  VA++R  +RD+GL+K PGCSWI+    VH F A D+S+P +D IY+ L 
Sbjct: 587 SVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELE 646

Query: 708 ILELEIME 715
            L  ++++
Sbjct: 647 KLNYKMIK 654



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 142/553 (25%), Positives = 262/553 (47%), Gaps = 69/553 (12%)

Query: 33  THSFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
            H  +LL LC    N    + +H+ +II    +    L +NLI SYA LG +  + +VF+
Sbjct: 10  NHYCALLKLCCETHNFTKAKNLHS-HIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFD 68

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS----------------MYPAEDT 133
            +  PN   + TIL   SK G   +   ++  M  +                 +Y +   
Sbjct: 69  QMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 134 YPFVIR----------SCSCLLDFIS-------GEKIHAQVVKLGFDSFDDVGDALVEFY 176
           Y  +++          + S LL   S       G +IH  VVK GF S+  VG  LV+ Y
Sbjct: 129 YNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMY 188

Query: 177 -----IKCDGGFENE---KGMI------------------QRKFKDLKSR----WNSLIS 206
                I C     +E   K ++                  +R F +++ R    W S+I+
Sbjct: 189 SKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMIT 248

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              QNG    + ++F+ M++E  + D  T  ++L +   + +L+ G+ VH   + +D+  
Sbjct: 249 GFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKD 308

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           ++ V +AL+ MY K  +++ A+ +F KM+ K+ V W  M+  Y Q+G+ +E+++    M 
Sbjct: 309 NIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           + G   D FT  + +SS + + ++E G Q HA  L +G    ++V N+L+ +Y +C  + 
Sbjct: 369 KYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIE 428

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            + ++F+ +  K  V+W++++ GY    ++ E + LF  M   G++ D VT I +L AC 
Sbjct: 429 DSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488

Query: 447 NIGALEHVKYLHGYSM-KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             G +E    +    + + G+  +    T +   +++ G IE A    ++    S D I+
Sbjct: 489 RAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPF-SPDAIS 547

Query: 506 WNSMISAYAKHGD 518
           W +++S+   +G+
Sbjct: 548 WATLLSSCRFYGN 560



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 184/406 (45%), Gaps = 68/406 (16%)

Query: 274 LLSMYSKLASLEDA-------------------------------KMLFDKMSDKDRVVW 302
           L+S Y+KL S+  A                               + LFD M  +D V W
Sbjct: 50  LISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSW 109

Query: 303 NIMISAYYQSGFPKESLELLMCMVRS--GFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
           N +IS Y   G   +S++    M+++   F  +  T    +   S    ++ G+Q+H +V
Sbjct: 110 NSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHV 169

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV------------------- 401
           ++ G    V V + L+DMY +   ++CARK+FD +  K VV                   
Sbjct: 170 VKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSK 229

Query: 402 ------------SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
                       SW+SMI G+  +    +A+ +F EMKLE +++D  T  ++L AC  + 
Sbjct: 230 RLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVM 289

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL+  K +H Y ++        V +A+   Y KC  I+ A  +F  +K+  K++++W +M
Sbjct: 290 ALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVF--KKMTCKNVVSWTAM 347

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           +  Y ++G   +  K ++ M++  + PD  T   ++++C N   +EEG   F     + G
Sbjct: 348 LVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG-AQFHARALTSG 406

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
                    ++V L G+ G ++++  L  ++ FK D   W  L+S 
Sbjct: 407 LISFITVSNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSG 451



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 22/301 (7%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C     LQ   Q+HA YII      N+ ++S L+D Y     +  ++ VF  +T 
Sbjct: 280 SVLTACGGVMALQEGKQVHA-YIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTC 338

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +L    + G  E+ +  +  M    + P + T   VI SC+ L     G + 
Sbjct: 339 KNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQF 398

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA+ +  G  SF  V +ALV  Y KC    ++ +   +  FKD +  W +L+S   Q GK
Sbjct: 399 HARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKD-EVTWTALVSGYAQFGK 457

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV-------HCVAVVSDFCK 266
           + ++  LF+ M   G + D  T I +L +      +E G  +       H +  + D   
Sbjct: 458 ANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDH-- 515

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA---YYQSGFPKESLELL 322
                T ++ ++S+   +E+A+   +KM    D + W  ++S+   Y      K + E L
Sbjct: 516 ----YTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFL 571

Query: 323 M 323
           M
Sbjct: 572 M 572



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/355 (19%), Positives = 145/355 (40%), Gaps = 66/355 (18%)

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N    K +H+++++     +  + N+LI  Y +   +  A K+FD +    + SW++++ 
Sbjct: 24  NFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILS 83

Query: 409 GYVTHDQSLEALRLFSEM-KLEGV--------------------------------EVDF 435
            Y    +  E   LF  M + +GV                                 ++ 
Sbjct: 84  AYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNR 143

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           +T   +L      G ++  + +HG+ +K G  S   V + +   Y+K G I  A ++FDE
Sbjct: 144 ITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDE 203

Query: 496 --EK---------------------------IDSKDIITWNSMISAYAKHGDWSQCFKLY 526
             EK                           +  +D I+W SMI+ + ++G       ++
Sbjct: 204 LPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIF 263

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +MK  +++ D  TF  +LTAC     ++EG+ +   +  +  Y+ +    +++V++  +
Sbjct: 264 REMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYKDNIFVASALVDMYCK 322

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKM--HSETELAELTAEKLISMEPEN 639
             ++  A  + K M  K +   W  +L       +SE  +   +  +   +EP++
Sbjct: 323 CKNIKSAEAVFKKMTCK-NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDD 376


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/464 (39%), Positives = 288/464 (62%), Gaps = 4/464 (0%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L     L+ L+ GR +H     S F  DL +   +L+MY+K  SLE+A+ LFDKM  KD
Sbjct: 111 MLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKD 170

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V W ++IS Y QSG   E+L L   M+  GF+ + FT  + + +  T  +   G+Q+HA
Sbjct: 171 MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHA 230

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             L+ G D  V V +SL+DMY     +  A+ IF+S+  K VVSW+++I G+    +   
Sbjct: 231 FSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEH 290

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            +RLF +M  +G E    T  ++L AC + G+LE  K++H + +K G   ++ +   +  
Sbjct: 291 VMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLID 349

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAK G I+ A ++F   ++  +DI++WNS+IS YA+HG  ++  +L+ QM ++ V+P+ 
Sbjct: 350 MYAKSGSIKDAKKVF--RRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNE 407

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL +LTAC ++GL++EG+  F+ MK+ +  E    H+ ++V+LLGRAG ++EA + ++
Sbjct: 408 ITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIE 466

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP KP A VWG LL AC+MH   +L    AE++  ++P ++G +VLLSNIYA+AG+ + 
Sbjct: 467 EMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSD 526

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            AK+R  +++ G+KK P CSW+EI   VH F A D SHP  + I
Sbjct: 527 AAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEI 570



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 223/444 (50%), Gaps = 8/444 (1%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           S+ P    Y  ++  C+ L     G  IHA +    F+    + + ++  Y KC G  E 
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC-GSLEE 158

Query: 186 EKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            + +  +   KD+ S W  LIS   Q+G++ ++  LF  M   G + +  TL +LL+++ 
Sbjct: 159 AQDLFDKMPTKDMVS-WTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG 217

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
              S   GR +H  ++   +  ++ V ++LL MY++ A + +AK++F+ ++ K+ V WN 
Sbjct: 218 TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA 277

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I+ + + G  +  + L   M+R GF    FT  ++V + ++  ++E GK +HA+V+++G
Sbjct: 278 LIAGHARKGEGEHVMRLFXQMLRQGFEPTHFT-YSSVLACASSGSLEQGKWVHAHVIKSG 336

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                 + N+LIDMY +   +  A+K+F  +  + +VSW+S+I GY  H    EAL+LF 
Sbjct: 337 GQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFE 396

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +M    V+ + +T +++L AC + G L+  +Y      K  + +  + +  +     + G
Sbjct: 397 QMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAG 456

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLG 543
            +  A +  +E  I     + W +++ A   H +      +Y   +  ++ P D    + 
Sbjct: 457 RLNEANKFIEEMPIKPTAAV-WGALLGACRMHKNMD--LGVYAAEQIFELDPHDSGPHVL 513

Query: 544 LLTACVNAGLVEEGRIIFKEMKES 567
           L     +AG + +   + K MKES
Sbjct: 514 LSNIYASAGRLSDAAKVRKMMKES 537



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 184/380 (48%), Gaps = 7/380 (1%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +LN C   + L+Q   IHA +I       +L+L + +++ YA  G L  +Q +F+ + + 
Sbjct: 111 MLNKCTYLRKLKQGRAIHA-HIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTK 169

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   S+ G+  + L ++ +M      P E T   ++++         G ++H
Sbjct: 170 DMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLH 229

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K G+D    VG +L++ Y +     E +        K++ S WN+LI+   + G+ 
Sbjct: 230 AFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS-WNALIAGHARKGEG 288

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E    LF  M  +G E    T  ++L +     SLE G+ VH   + S       +   L
Sbjct: 289 EHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTL 347

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY+K  S++DAK +F ++  +D V WN +IS Y Q G   E+L+L   M+++  + + 
Sbjct: 348 IDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNE 407

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T ++ +++ S    ++ G+     + ++  + QV+ H +++D+      LN A K  + 
Sbjct: 408 ITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEE 467

Query: 395 VKTK-TVVSWSSMIKGYVTH 413
           +  K T   W +++     H
Sbjct: 468 MPIKPTAAVWGALLGACRMH 487


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 212/703 (30%), Positives = 371/703 (52%), Gaps = 45/703 (6%)

Query: 31  TATHSFSLLN-LCENP------QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           + T + +L+N L  NP         QQ+HA+ +         +     I  Y+++ LL  
Sbjct: 3   SPTSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSI--YSHINLLHD 60

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           S ++FN++  P +L + ++++  +  G   K+L  +  M    +YP  + +P V+++C+ 
Sbjct: 61  SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAM 120

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ----RKFKDLKS 199
           L+D   GE +H  ++++G D     G+AL+  Y K    F  + G  +    +   ++  
Sbjct: 121 LMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLR--FLKKSGRQRLGASQVLDEMTE 178

Query: 200 RWNSLISLAV---QNGKSEKSFELFKL-MRMEGAEFDSGTLINLLRSTVELKSLE---LG 252
           R  S+ + +V     G+     E F   +     EF++  L    +   E + +E   LG
Sbjct: 179 RTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLG 238

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +          KD+S +           S++  + +F+ M +KD V WN +I+   ++
Sbjct: 239 QQI----------KDISHSM----------SVDSVRKIFEMMPEKDLVSWNTIIAGNARN 278

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G   E+L ++  M  +  + D FT  + +  I+   +I  GK++H   +R G D +V V 
Sbjct: 279 GLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVA 338

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           +SLIDMY +C  +  + ++F  +  +  +SW+S+I G V +    E L+ F +M +  ++
Sbjct: 339 SSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIK 398

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
               +  +I+PAC ++  L   K LHGY  + G +    + +++   YAKCG I  A ++
Sbjct: 399 PKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQI 458

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           FD  ++  +D+++W +MI   A HG      +L+ QMK   + P+ + F+ +LTAC +AG
Sbjct: 459 FDRMRL--RDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAG 516

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LV+E    F  M   +G  P  EHYA++ +LLGRAG ++EA + +  MP  P   VW  L
Sbjct: 517 LVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATL 576

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           LSAC++H   ++AE  A +++ ++P+N G Y+LL+NIY+AA +W   AK R  LR  G++
Sbjct: 577 LSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIR 636

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           KTP CSWIE+   V+ F A D+SHP  + I   + +L +E+ME
Sbjct: 637 KTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVL-MELME 678


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 221/673 (32%), Positives = 372/673 (55%), Gaps = 23/673 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIHA + I  G   ++ + ++L++ Y   GL   +  VF ++ +P+ + + T+L   S F
Sbjct: 99  QIHA-FAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVL---SGF 154

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
              +  L    +M    +     T   V+  CS    FI G ++H++++K G D    VG
Sbjct: 155 QRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVG 214

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE-KSFELFKLMRMEG 228
           +AL+  Y +C    E  +   + + KDL S WN+++S   Q G S  ++  +F  M  EG
Sbjct: 215 NALITMYSRCCRLVEARRVFDEMRNKDLVS-WNAMLSGYAQEGNSGLEAILVFLEMLKEG 273

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + D  +    + +    K  ELGR +H +AV   +   + V   L+S YSK   +EDAK
Sbjct: 274 MKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAK 333

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           ++F+ + D++ V W  MIS        +++  L   M R G   +  T +  + +I TMK
Sbjct: 334 LVFESIIDRNVVSWTTMISIS-----EEDATSLFNEMRRDGVYPNDVTFVGLIHAI-TMK 387

Query: 349 N-IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           N +E G+ +H   ++     +++V NSLI MY + E ++ + K+F+ +  + ++SW+S+I
Sbjct: 388 NLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLI 447

Query: 408 KGYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            GY  +    EAL+ F    +E    E  F ++++ + +   I ++ H +  H + +KLG
Sbjct: 448 SGYAQNGLWQEALQTFLSALMESRPNEFTFGSVLSSIASAEAI-SMRHGQRCHSHILKLG 506

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           LN+   V++A+   YAK G I  +  +F E  +  K+ + W ++ISA+A+HGD+     L
Sbjct: 507 LNTNPIVSSALLDMYAKRGSICESLGVFSETPL--KNEVAWTAIISAHARHGDYEAVMNL 564

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M++  V+PD ITFL ++TAC   G+V+ G  +F  M + +  EPS EHY+SMV++LG
Sbjct: 565 FKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLG 624

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG + EA E V  +P      V   LL AC++H   ++A+  A+ LI MEP  +G+YVL
Sbjct: 625 RAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVL 684

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK-----LVHEFWAADQSHPQAD 700
           +SN+YA  G+W  VAK+R  +R+RG++K  G SW+++G       +H F + D+ HPQ++
Sbjct: 685 MSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDVGDADGSLYLHGFSSDDKFHPQSE 744

Query: 701 AIYTILGILELEI 713
            IY +   L LE+
Sbjct: 745 EIYRMAETLGLEM 757



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 149/579 (25%), Positives = 280/579 (48%), Gaps = 31/579 (5%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           H  + ILH + Q   +      S  ++    L Q    +I S N  +   + +NLS    
Sbjct: 5   HPPFKILHRVVQQRSIQFKYFHSSKHVHQ-PLDQSPQTTIASLNRSMLTALRRNLSL--- 60

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
             + L ++K+          D     I   +C  D   G +IHA  +  GF S   V ++
Sbjct: 61  --EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNS 118

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRME 227
           L+  Y  C  G  +   ++   F++L +     WN+++S   Q      +F L   M   
Sbjct: 119 LMNMY--CKAGLFDRALVV---FENLNNPDIVSWNTVLS-GFQRSDDALNFAL--RMNFT 170

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G  FD+ T   +L    + +    G  +H   +      ++ V  AL++MYS+   L +A
Sbjct: 171 GVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEA 230

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPK-ESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           + +FD+M +KD V WN M+S Y Q G    E++ + + M++ G + D  +   A+S+   
Sbjct: 231 RRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGH 290

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            K  E G+Q+H+  ++ G D  V V N LI  Y +CED+  A+ +F+S+  + VVSW++M
Sbjct: 291 GKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTM 350

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I   ++ +   +A  LF+EM+ +GV  + VT + ++ A      +E  + +HG  +K   
Sbjct: 351 IS--ISEE---DATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSF 405

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            S  +V+ ++   YAK   +  + ++F+E  ++ ++II+WNS+IS YA++G W +  + +
Sbjct: 406 LSELNVSNSLITMYAKFESMSDSMKVFEE--LNYREIISWNSLISGYAQNGLWQEALQTF 463

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLV--EEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
                 + RP+  TF  +L++  +A  +    G+     + +  G   +    ++++++ 
Sbjct: 464 LSALM-ESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILK-LGLNTNPIVSSALLDMY 521

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
            + G + E+  +  + P K +   W  ++SA   H + E
Sbjct: 522 AKRGSICESLGVFSETPLKNEV-AWTAIISAHARHGDYE 559


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 222/702 (31%), Positives = 374/702 (53%), Gaps = 26/702 (3%)

Query: 17  KFLRFPANQTRPHMTATH----SF---SLLNLCENPQHLQQIHARYIILHGLHQNLILSS 69
           +F  F +   R H   +H    SF   SLL+ C N Q L++IHA  I+  G  Q L ++S
Sbjct: 29  RFCSFSSVLFRTHHLNSHYLTCSFPYSSLLHSCNNLQALKRIHASLIVSSGF-QPLSVAS 87

Query: 70  NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
            LI  Y+ L     +  + NS   PN++++ +I+K+    G +   LL Y +M    +  
Sbjct: 88  KLITLYSQLNDFRSAFSICNSFEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGVAH 147

Query: 130 AEDTYPFV---IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
              T+P +   I S  C +++  GE +H   +K+GF      G+ ++E Y+KC       
Sbjct: 148 DSFTFPIINQAIWSLGCRVEY--GETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNAS 205

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           K   +   +DL S W S+IS  +      + F+LF  MRME  E +S T++ +L++    
Sbjct: 206 KLFDEMTHRDLVS-WTSIISGYIYGESFSRGFKLFNKMRME-MEPNSVTMVVMLQACSAF 263

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA-SLEDAKMLFDKMSDKDRVVWNIM 305
           +S+  GR +H   +   F  D SV  ++L MY+K   S E+ +  F ++ ++D + WNI+
Sbjct: 264 ESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIEERDIISWNIL 323

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+ Y   G   E  E    M R    + + +    VS+I+   N+  G  +H + ++ G 
Sbjct: 324 IAFYSFRGDIAEVAERFNEMRRE-VTSSIESLTLVVSAIANCANLSEGGMLHCSAIKTGL 382

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
            +   +   L+ +Y +C  L  + ++F  +  +  ++WSSM+ G+  +    EA+ L+ +
Sbjct: 383 -HDTVLMTCLLALYAKCGALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQ 441

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL-----SSVNTAIFISY 480
           M   G++ +   I  ++ A  ++GAL+  K  H + ++  L+S      + + T++   Y
Sbjct: 442 MLASGLQPNHDIISTLVIAYTHLGALQLGKATHAFFIR-NLSSWPEEDSAPLETSLLNMY 500

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            +CG I  A   F+  ++  KD++TW SMI  +  HG   +  K +  M +S+V+P+ +T
Sbjct: 501 IRCGSISSALICFN--RVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSVT 558

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           FL LL+AC ++GLV EG  +F  MK  +  EP   HY  MV+LLGR+G + EA  ++  +
Sbjct: 559 FLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILKL 618

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660
              PD+R+WG LL+A ++H + +L E  AEKL+ +EP+N G Y L SNI A+  +W  V 
Sbjct: 619 VTCPDSRIWGALLAASRVHEDKKLGEYAAEKLLELEPDNVGYYTLWSNIEASLERWGEVE 678

Query: 661 KMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           ++R  + +R LKK PG S IE+  ++H F + D SH Q + I
Sbjct: 679 EVRRVMHERDLKKKPGWSCIEVKGMIHGFVSGDTSHHQVEEI 720


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 331/585 (56%), Gaps = 15/585 (2%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF---DSFDDVGDALVEFYIKCDG 181
             + P   T+P ++R+        S  ++HA  ++LG    + F     +LV  Y++   
Sbjct: 63  HPLRPDSFTFPPLVRAAP---GPASAAQLHACALRLGLLHPNVF--ASGSLVHAYLRFGR 117

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             E  +   +   +D+ + WN+++S   +N ++  +  L   M  EG   D+ TL ++L 
Sbjct: 118 VAEAYRVFDEMPERDVPA-WNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLP 176

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
             V L    L  ++H  AV      +L V  AL+ +Y KL  L +A  +F  M+ +D V 
Sbjct: 177 MCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVT 236

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN +ISA  Q G    ++EL   M+ SG   D+ T ++  S+++   +    K +H  V 
Sbjct: 237 WNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVR 296

Query: 362 RNGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           R G D   +   N+++DMY +   ++ A+K+FD++  + VVSW+++I GY+ +  + EA+
Sbjct: 297 RRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAI 356

Query: 421 RLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           R++++M   EG++    T +++LPA   +G L+    +H  S+K GLN    V T +   
Sbjct: 357 RIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDL 416

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG +  A  LF  E +  +    WN++I+    HG  ++   L++QM+Q +++PD +
Sbjct: 417 YAKCGKLVEAMFLF--EHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHV 474

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TF+ LL AC +AGLV++GR  F  M+  YG  P  +HY  MV++LGRAG +DEA E ++ 
Sbjct: 475 TFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQS 534

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPD+ VWG LL AC++H   E+ ++ ++ L  ++PEN G YVL+SN+YA  GKW+GV
Sbjct: 535 MPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGV 594

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS--HPQADAI 702
             +R+ +R + L+KTPG S +E+   V  F++  Q+  HPQ + I
Sbjct: 595 DAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEI 639



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/571 (24%), Positives = 253/571 (44%), Gaps = 53/571 (9%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L+     P    Q+HA  + L  LH N+  S +L+ +Y   G ++ + +VF+ +   +  
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVP 134

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
            +  +L  L +       + +  +M  + +     T   V+  C  L D      +H   
Sbjct: 135 AWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYA 194

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           VK G      V +AL++ Y K     E          +DL + WNS+IS   Q GK   +
Sbjct: 195 VKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVT-WNSIISANEQGGKVAAA 253

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDF-CKDLSVNTALL 275
            ELF  M   G   D  TL++L  +  +    ELG + VHC      +   D+    A++
Sbjct: 254 VELFHGMMESGVCPDVLTLVSLASAVAQCGD-ELGAKSVHCYVRRRGWDVGDIIAGNAMV 312

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADL 334
            MY+K++ ++ A+ +FD + D+D V WN +I+ Y Q+G   E++ +   M    G +   
Sbjct: 313 DMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQ 372

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T ++ + + S +  ++ G +MHA  ++ G +  V V   LID+Y +C  L  A  +F+ 
Sbjct: 373 GTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEH 432

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  ++   W+++I G   H    +AL LFS+M+ E ++ D VT +++L AC + G ++  
Sbjct: 433 MPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQG 492

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           +            S   +   ++      G + +A                +  M+    
Sbjct: 493 R------------SFFDLMQTVY------GIVPIAKH--------------YTCMVDMLG 520

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI----IFKEMKESYGY 570
           + G   + F+    M    ++PD   +  LL AC   G VE G++    +F+   E+ GY
Sbjct: 521 RAGQLDEAFEFIQSMP---IKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGY 577

Query: 571 EPSQEHYASMVNLLGRAGH---MDEARELVK 598
                 Y  M N+  + G    +D  R LV+
Sbjct: 578 ------YVLMSNMYAKIGKWDGVDAVRSLVR 602


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 226/720 (31%), Positives = 382/720 (53%), Gaps = 16/720 (2%)

Query: 12  QSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILS 68
           + G  +F R      RP     +S  +L L  +  HL   +QIH  Y +    + +  L 
Sbjct: 138 KEGIAQFCRMQLFGVRPD---AYSLCIL-LGASDGHLGYAKQIHG-YSVRKVFYGDPFLE 192

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           S LI  Y + G    + ++F  +    N + +  ++    + G +E +L VY     +++
Sbjct: 193 SGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENV 252

Query: 128 YPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
                ++   + +C C  +F+S G ++H  +VKLGF++   V  +L+  Y KC    + E
Sbjct: 253 KLVSASFTSTLSAC-CQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAE 311

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
               Q   K  +  WN++IS  V NG+S    +++K M++     DS T  N+L S   +
Sbjct: 312 NVFDQVSVKKTE-LWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLV 370

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            S + GR++H   V      ++++ +ALL+MYSK  + +DA  +F+ +  +D V W  MI
Sbjct: 371 GSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMI 430

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S + Q+    E+LE    M   G + D     + VS+ + +KN+  G  +H   +++G +
Sbjct: 431 SGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLE 490

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V V +SL+DMY +      +  +F  +  K +V+W+S+I  Y  +     ++ LFS+M
Sbjct: 491 QDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQM 550

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
              G+  D V+I ++L +  ++  L   K +HGY ++  + S   +  A+   Y KCG +
Sbjct: 551 TQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFL 610

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           + A  +F  + +   +++TWN MI+    HGDW +   L+ +M+   + PD ITF+ LLT
Sbjct: 611 KYAQHIF--QNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLT 668

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           +C + G +EEG  +F+ M   +G EP  EHY ++V+LLGRAG +D+A   VK++P +PD 
Sbjct: 669 SCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDR 728

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +W  LL +C++H   EL +L A KL+ +EP    NYV L N+Y      +  A +R  +
Sbjct: 729 SIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASM 788

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME--GRRESSEEL 724
           +++GLKKTPGCSWIE+G  +  F++ D S P+   IY +L  L   + +  G  ES E L
Sbjct: 789 KEKGLKKTPGCSWIEVGNSIDVFFSGDSSSPRTIEIYDLLNSLRRNMRKKGGHYESVEAL 848



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 156/625 (24%), Positives = 305/625 (48%), Gaps = 45/625 (7%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDS 74
           + R P N TR     T+  SLL  C    N Q+ + IH+  I     + +  ++++LI+ 
Sbjct: 40  YSRNPLNATR----FTYP-SLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINF 94

Query: 75  YANLGLLSLSQQVFNS-----ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
           Y   G    + +VF+      ++  +   + +I+    +FG  ++ +  + +M L  + P
Sbjct: 95  YFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRP 154

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEK 187
             D Y   I   +        ++IH   V+  F  D F + G  L+  Y  C    +   
Sbjct: 155 --DAYSLCILLGASDGHLGYAKQIHGYSVRKVFYGDPFLESG--LIYMYFSCGRPLD--- 207

Query: 188 GMIQRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
               R FK+L+ +     WN +I    +NG  E S E++ L + E  +  S +  + L +
Sbjct: 208 --AWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSA 265

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             + + +  G  VHC  V   F  D  V T+LL+MYSK   +EDA+ +FD++S K   +W
Sbjct: 266 CCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELW 325

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N MISAY  +G   + L++   M       D  TA   +SS   + + ++G+ +HA +++
Sbjct: 326 NAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVK 385

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
                 V++ ++L+ MY +C + + A  IF+++K + VV+W SMI G+  + + +EAL  
Sbjct: 386 RPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEF 445

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           ++ M + G + D   + +++ AC  +  +     +HG ++K GL     V +++   Y+K
Sbjct: 446 YNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSK 505

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
               +M+G +F +  +  K+++ WNS+IS Y ++G       L++QM Q  + PD ++  
Sbjct: 506 FNFPKMSGNVFSDMPL--KNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSIT 563

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA------SMVNLLGRAGHMDEAREL 596
            +L +  +  ++ +G+ +       +GY   Q   +      +++++  + G +  A+ +
Sbjct: 564 SVLVSVSSVAVLRKGKAV-------HGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHI 616

Query: 597 VKDMPFKPDARVWGPLLSACKMHSE 621
            ++M  + +   W  +++ C  H +
Sbjct: 617 FQNM-LQTNLVTWNIMIAGCGSHGD 640



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 247/513 (48%), Gaps = 19/513 (3%)

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-V 168
           G+Y   L  Y +  L +      TYP ++++C  L +   G+ IH+ ++  GF   D  +
Sbjct: 31  GQYVDALQFYSRNPLNA---TRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYI 87

Query: 169 GDALVEFYIKCDGGFENEKGMIQR------KFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
             +L+ FY KC G F N   +  +        +D+ + WNS+++   + G  ++    F 
Sbjct: 88  TTSLINFYFKC-GSFGNAVKVFDKLPESEVSGQDV-TFWNSIVNGYFRFGHKKEGIAQFC 145

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M++ G   D+ +L  LL ++     L   + +H  +V   F  D  + + L+ MY    
Sbjct: 146 RMQLFGVRPDAYSLCILLGASD--GHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCG 203

Query: 283 SLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
              DA  LF ++ DK  VV WN+MI  + ++G  + SLE+ +       +    +  + +
Sbjct: 204 RPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTL 263

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
           S+    + + +G Q+H ++++ G +    V  SL+ MY +C+ +  A  +FD V  K   
Sbjct: 264 SACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTE 323

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
            W++MI  YV + +S + L+++ +MK+  +  D +T  N+L +C  +G+ +  + +H   
Sbjct: 324 LWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAEL 383

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K  + S  ++ +A+   Y+KCG  + A  +F+   I  +D++ W SMIS + ++  + +
Sbjct: 384 VKRPIQSNVALQSALLTMYSKCGNSDDANSIFN--TIKGRDVVAWGSMISGFCQNRKYME 441

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             + Y  M     +PD      +++AC     V  G  I     +S G E      +S+V
Sbjct: 442 ALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKS-GLEQDVFVASSLV 500

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           ++  +      +  +  DMP K +   W  ++S
Sbjct: 501 DMYSKFNFPKMSGNVFSDMPLK-NLVAWNSIIS 532



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 201/430 (46%), Gaps = 23/430 (5%)

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KD 267
           VQ G+   + + +    +    F   T  +LL++   L +L+ G+ +H   +   F   D
Sbjct: 28  VQQGQYVDALQFYSRNPLNATRF---TYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKM-----SDKDRVVWNIMISAYYQSGFPKESLELL 322
             + T+L++ Y K  S  +A  +FDK+     S +D   WN +++ Y++ G  KE +   
Sbjct: 85  PYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQF 144

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M   G R D ++    +   ++  ++ + KQ+H   +R        + + LI MY  C
Sbjct: 145 CRMQLFGVRPDAYSLCILLG--ASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSC 202

Query: 383 EDLNCARKIFDSVKTK-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
                A ++F  ++ K  VV+W+ MI G+  +     +L ++   K E V++   +  + 
Sbjct: 203 GRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTST 262

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L AC     +     +H   +KLG  +   V T++   Y+KC  +E A  +FD+  +   
Sbjct: 263 LSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKT 322

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           ++  WN+MISAY  +G      K+Y QMK   + PD +T   +L++C   G  + GR+I 
Sbjct: 323 EL--WNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIH 380

Query: 562 KEMKESYGYEPSQEHYA---SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CK 617
            E+ +     P Q + A   +++ +  + G+ D+A  +   +  + D   WG ++S  C+
Sbjct: 381 AELVK----RPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR-DVVAWGSMISGFCQ 435

Query: 618 MHSETELAEL 627
                E  E 
Sbjct: 436 NRKYMEALEF 445



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 25/240 (10%)

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL-NSL 469
           V   Q ++AL+ +S   L        T  ++L AC  +  L++ K +H   +  G   S 
Sbjct: 28  VQQGQYVDALQFYSRNPLNATRF---TYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84

Query: 470 SSVNTAIFISYAKCGCIEMAGELFD---EEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
             + T++   Y KCG    A ++FD   E ++  +D+  WNS+++ Y + G   +    +
Sbjct: 85  PYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQF 144

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY------ASM 580
            +M+   VRPD  +   LL A        +G + +   K+ +GY   +  Y      + +
Sbjct: 145 CRMQLFGVRPDAYSLCILLGA-------SDGHLGYA--KQIHGYSVRKVFYGDPFLESGL 195

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           + +    G   +A  L K++  K +   W  ++       E  L E + E  +  + EN 
Sbjct: 196 IYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGG---FGENGLWENSLEVYLLAKNENV 252


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 305/527 (57%), Gaps = 17/527 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I+   ++G S ++   F  MR    + +  T    ++S   L  L  GR  H  A+
Sbjct: 120 WNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQAL 179

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           +  F  DL V++AL+ MYSK   L DA+ LFD++S ++ V W  MI+ Y Q+     +L 
Sbjct: 180 IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALL 239

Query: 321 LL--MCMVRSGFRAD---------LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
           L     +  SG   D         + + ++A S +S  K+I  G  +H  +++ G +  +
Sbjct: 240 LFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSE-KSITEG--VHGFLIKRGFEGDL 296

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V N+L+D Y +C +L  +R++FD +  + V+SW+S+I  Y  +  S E++ +F  M  +
Sbjct: 297 GVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKD 356

Query: 430 G-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           G +  + VT+  +L AC + G+    K +H   +K+GL S   V T+I   Y KCG +EM
Sbjct: 357 GEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEM 416

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A + FD  ++  K++ +W++M++ Y  HG   +  +++ +M  + V+P+ ITF+ +L AC
Sbjct: 417 ARKAFD--RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 474

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +AGL+EEG   FK M   +  EP  EHY  MV+LLGRAG++ EA +L+K M  +PD  V
Sbjct: 475 SHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVV 534

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           WG LL AC+MH   +L E++A KL  ++P+N G YVLLSNIYA AG+W  V +MR  +++
Sbjct: 535 WGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKN 594

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            GL K PG S ++I   VH F   D+ HPQ + IY  L  L +++ E
Sbjct: 595 SGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQE 641



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 251/529 (47%), Gaps = 66/529 (12%)

Query: 87  VFNS-ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +FN  +   N   + +++  L++ G+  + L  +  M   S+ P   T+P  I+SCS LL
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
           D  SG + H Q +  GF+    V  ALV+ Y KC G   + + +    F ++  R    W
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKC-GELRDARTL----FDEISHRNIVSW 221

Query: 202 NSLISLAVQNGKSEKSFELFK--LMRMEGAEFDSGTLINLLR--------STVELKSLEL 251
            S+I+  VQN  + ++  LFK  L+   G+E D    ++ +         S V  KS+  
Sbjct: 222 TSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITE 281

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  VH   +   F  DL V   L+  Y+K   L  ++ +FD M+++D + WN +I+ Y Q
Sbjct: 282 G--VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQ 339

Query: 312 SGFPKESLELLMCMVRSG---FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           +G   ES+E+   MV+ G   + A   +A+    + S  + +  GK +H  V++ G +  
Sbjct: 340 NGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL--GKCIHDQVIKMGLESN 397

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           V V  S+IDMYC+C  +  ARK FD ++ K V SWS+M+ GY  H  + EAL +F EM +
Sbjct: 398 VFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNM 457

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            GV+ +++T +++L AC + G LE            G +   +++               
Sbjct: 458 AGVKPNYITFVSVLAACSHAGLLEE-----------GWHWFKAMSHE------------- 493

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
               FD E      +  +  M+    + G   + F L   MK   +RPD + +  LL AC
Sbjct: 494 ----FDVE----PGVEHYGCMVDLLGRAGYLKEAFDLIKGMK---LRPDFVVWGALLGAC 542

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEAREL 596
                V+ G I  +++ E    +P    +Y  + N+   AG  ++   +
Sbjct: 543 RMHKNVDLGEISARKLFE---LDPKNCGYYVLLSNIYADAGRWEDVERM 588



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 105/203 (51%), Gaps = 10/203 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           ++I  G   +L + + L+D+YA  G L +S++VF+ +   + + + +I+   ++ G   +
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK-----IHAQVVKLGFDSFDDVG 169
           ++ ++ +M    +   E  Y  V  S   L    SG +     IH QV+K+G +S   VG
Sbjct: 346 SMEIFHRM----VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVG 401

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            ++++ Y KC       K   + + K++KS W+++++    +G ++++ E+F  M M G 
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKS-WSAMVAGYGMHGHAKEALEVFYEMNMAGV 460

Query: 230 EFDSGTLINLLRSTVELKSLELG 252
           + +  T +++L +      LE G
Sbjct: 461 KPNYITFVSVLAACSHAGLLEEG 483



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/145 (19%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +D  ++ +WNS+I+  A+ GD  +  + ++ M++  ++P+  TF   + +C     +  G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           R   ++    +G+EP     +++V++  + G + +AR L  ++  + +   W  +++   
Sbjct: 172 RQAHQQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITGYV 229

Query: 618 MHSETELAELTAEKLISMEPENAGN 642
            + +   A L  ++ +  E  + G+
Sbjct: 230 QNDDAHRALLLFKEFLVEESGSEGD 254


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 209/644 (32%), Positives = 333/644 (51%), Gaps = 84/644 (13%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA+++K G  +   +   L+  Y   +  F +   ++Q         ++SLI    +   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNC-FNDADLILQSIPDPTVYSFSSLIYALTKAKL 96

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             +S  +F  M   G   D+  L NL +   EL + + G+ +HCVA VS    D  V  +
Sbjct: 97  FSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGS 156

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVV-------------------------------- 301
           L  MY +   + DA+ +FD+MS+KD V                                 
Sbjct: 157 LFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN 216

Query: 302 ---WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN ++S + +SG+ KE++ +   M   GF  D  T  + + S+   +N+  G+Q+H 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHG 276

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-------------------- 398
            V++ G      V ++++DMY +   +    K+FD  +                      
Sbjct: 277 YVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDK 336

Query: 399 ---------------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
                           VVSW+S+I G   + + +EAL LF EM++ GV+ + VTI ++LP
Sbjct: 337 ALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLP 396

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC NI AL H +  HG+++++ L     V +A+   YAKCG I+M+  +F+   + +K++
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFN--MMPTKNL 454

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           + WNS+++ Y+ HG   +   ++  + ++ ++PD I+F  LL+AC   GL +EG   F  
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M E YG +P  EHY+ MVNLLGRAG + EA +L+K++PF+PD+ VWG LL++C++ +  +
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVD 574

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           LAE+ A+KL  +EPEN G YVL+SNIYAA G W  V  +R  +   GLKK PGCSWI++ 
Sbjct: 575 LAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
             V+   A D+SHPQ D           +I E   E SEE++ S
Sbjct: 635 NKVYTLLACDKSHPQID-----------QITEKMDEISEEMRKS 667



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/533 (21%), Positives = 226/533 (42%), Gaps = 72/533 (13%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q HAR I+  G   +  +S+ LI SY+N    + +  +  SI  P    + +++  L+K 
Sbjct: 36  QAHAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
             + +++ V+ +M    + P     P + + C+ L  F +G++IH      G D    V 
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKS------------------------------ 199
            +L   Y++C    +  K   +   KD+ +                              
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 200 ----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN ++S   ++G  +++  +F+ M   G   D  T+ ++L S  + ++L +GR +
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--------------------MS 295
           H   +     KD  V +A+L MY K   +     LFD+                    + 
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 296 DK---------------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
           DK               + V W  +I+   Q+G   E+LEL   M  +G + +  T  + 
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + +   +  +  G+  H   +R      V V ++LIDMY +C  +  ++ +F+ + TK +
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHG 459
           V W+S++ GY  H ++ E + +F  +    ++ DF++  ++L AC  +G   E  KY + 
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            S + G+       + +     + G ++ A +L  E   +  D   W +++++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEP-DSCVWGALLNS 566



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 37  SLLNLCENPQ---HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C N     H +  H   + +H L  ++ + S LID YA  G + +SQ VFN + +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH-LLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPT 451

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            N + + +++   S  G+ ++ + +++ +    + P   ++  ++ +C 
Sbjct: 452 KNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACG 500


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 198/631 (31%), Positives = 340/631 (53%), Gaps = 18/631 (2%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI----R 139
           ++ +F+ +   + + +  I+       +  + L ++ +M LQS    +   PF++    +
Sbjct: 68  ARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID---PFLLSLGLK 124

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C   L+++ G  +H   VK G  +   VG AL++ Y+K       E G   + F ++ +
Sbjct: 125 TCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKI-----GEIGRSCKVFDEMPT 179

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    W ++I+  V+ G SE     F  M     E+DS      L+++ +  +L  GR +
Sbjct: 180 RNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSI 239

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +   F ++  V  +L +MY+K   L+     F KM   D V W  +++AY Q G  
Sbjct: 240 HTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKE 299

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
              L+    M  S    + +T  A +S  +    ++WG+Q+HA+VL  G    +SV NS+
Sbjct: 300 DCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSI 359

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           + +Y +C +L    K+F S+K + +++WS++I  Y       EA    S M+ EG + + 
Sbjct: 360 MTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNE 419

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
             + ++L  C ++  LE  K LH + + +GL   S V +A+ I YAKCG I  A ++F +
Sbjct: 420 FALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMD 479

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
              D  DII+W +MIS YA+HG   +  +L+  +++  +RPD +TF+G+LTAC +AG+V+
Sbjct: 480 SWKD--DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVD 537

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G   F  M + Y   PS+EHY  M++LL RAG + +A  L++ MP + D  VW  LL A
Sbjct: 538 LGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRA 597

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H + +  +  A +++ ++P  AG ++ L+NI+AA GKW   A +R  ++ +G+ K P
Sbjct: 598 CRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEP 657

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           G S +++   V  F + D+SHPQ + IY IL
Sbjct: 658 GWSSVKVKDSVFAFVSGDRSHPQGEDIYNIL 688


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 185/583 (31%), Positives = 316/583 (54%), Gaps = 3/583 (0%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           +Y  +  +C  +     G   H Q+ +   +  + + +++++ Y KC    +  K   + 
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + ++L S WN++IS   +NG  +K F +F  M     + +  T I  LRS +    LE+G
Sbjct: 72  RERNLVS-WNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIG 130

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H  A+ S    + SVNTA+ +MY K   LE A+++F+KMS+K+ V W  ++  Y Q+
Sbjct: 131 KQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQA 190

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               ++L L   MV  G   D +     + + + ++ + +G+Q+H ++++ G + +VSV 
Sbjct: 191 ERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVG 250

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
             L+D Y +C +L  A K F+ +     VSWS++I GY    +  EAL+ F  ++   V+
Sbjct: 251 TPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVD 310

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           ++  T  +I  AC  +         H  ++K  L +     +A+   Y++CG ++ A  +
Sbjct: 311 INSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRV 370

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E ID  D + W ++I+ YA  G+  +  KL+ +M+   VRP+ +TF+ +LTAC ++G
Sbjct: 371 F--ESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSG 428

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LV EGR   + M  +YG   + +HY  MV++  RAG + EA EL++ MPF PDA  W  L
Sbjct: 429 LVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCL 488

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L  C  +   E+ EL AE L  ++PE+   Y+L+ N+YA+ GKW   A +R  + +R L+
Sbjct: 489 LGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLR 548

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           K   CSWI +   VH F   D+ HPQ + IY+ L  L   +++
Sbjct: 549 KELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIK 591



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 225/507 (44%), Gaps = 35/507 (6%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            L ++++  Y   G L+ +++VF+ +   N + + TI+   ++ G ++K   ++  M   
Sbjct: 46  FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLEL 105

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
              P   TY   +RS         G++IH+  ++ G  S   V  A+   Y+KC G  E 
Sbjct: 106 ETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKC-GWLEG 164

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            + + ++  +     W  ++    Q  +   +  LF  M  EG E D      +L++   
Sbjct: 165 AELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAG 224

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L+ L  GR +H   V      ++SV T L+  Y K ++LE A   F+ +S+ + V W+ +
Sbjct: 225 LEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSAL 284

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I+ Y Q G  +E+L+    +       + FT  +   + S + +   G Q HA+ +++  
Sbjct: 285 ITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSL 344

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
                  +++I MY  C  L+ A ++F+S+     V+W+++I GY     + EAL+LF  
Sbjct: 345 VAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRR 404

Query: 426 MKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           M+  GV  + VT I +L AC + G  +E  +YL   S   G+ +       +   Y++ G
Sbjct: 405 MQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAG 464

Query: 485 CIEMA-------------------------------GELFDEE--KIDSKDIITWNSMIS 511
            ++ A                               GEL  E   ++D +D   +  M +
Sbjct: 465 FLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFN 524

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YA  G W +   +   M + ++R +L
Sbjct: 525 LYASFGKWKEAANVRKMMAERNLRKEL 551



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 197/408 (48%), Gaps = 14/408 (3%)

Query: 25  QTRPHMTATHSF--SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLG 79
           +T+P+ +    F  SLLN    P  L+   QIH+ + I  GL  N  +++ + + Y   G
Sbjct: 106 ETKPNGSTYIGFLRSLLN----PSGLEIGKQIHS-HAIRSGLGSNASVNTAISNMYVKCG 160

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            L  ++ VF  ++  N++ +  I+   ++       L ++ +M  + +   E  +  V++
Sbjct: 161 WLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLK 220

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C+ L +   G +IH  +VKLG +S   VG  LV+FY+KC    E+     +   +    
Sbjct: 221 ACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCS-NLESATKAFEWISEPNDV 279

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            W++LI+   Q G+ E++ + F+ +R    + +S T  ++ ++   L     G   H  A
Sbjct: 280 SWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADA 339

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + S         +A+++MYS+   L+ A  +F+ + D D V W  +I+ Y   G   E+L
Sbjct: 340 IKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEAL 399

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDM 378
           +L   M   G R +  T IA +++ S    +  G+Q   ++  N G    +  ++ ++D+
Sbjct: 400 KLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDI 459

Query: 379 YCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
           Y     L  A ++  S+  +   +SW  ++ G  T+ ++LE   L +E
Sbjct: 460 YSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTY-RNLEIGELAAE 506



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 94/188 (50%), Gaps = 4/188 (2%)

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+  G+ V   +   +  AC  I +L   +  H    +   N    +  ++   Y KCG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A ++FDE  +  +++++WN++ISAYA++G + + F +++ M + + +P+  T++G L
Sbjct: 61  LADARKVFDE--MRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL 118

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
            + +N   +E G+ I      S G   +     ++ N+  + G + E  ELV +   + +
Sbjct: 119 RSLLNPSGLEIGKQIHSHAIRS-GLGSNASVNTAISNMYVKCGWL-EGAELVFEKMSEKN 176

Query: 606 ARVWGPLL 613
           A  W  ++
Sbjct: 177 AVAWTGIM 184


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 195/534 (36%), Positives = 307/534 (57%), Gaps = 21/534 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN  I   + +    ++  L+K +++ +G + D+ T   L ++   L  + +G  +    
Sbjct: 46  WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 105

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +   F  D+ V+ A++ +      L+ A+ +FDK   +D V WN MI+ Y + G+  E+L
Sbjct: 106 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 165

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
                M   G + D  T I  VSS + +++++ G++ H  +  NG    V + N+L+DMY
Sbjct: 166 NFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMY 225

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSM----------------IKGYVTHDQSLEALRLF 423
            +C +L  ARK+FDS+  KT+VSW++M                I GYV  ++  EAL LF
Sbjct: 226 MKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 285

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           +EM+   +  D VT+++ L AC  +GAL+   ++H Y  K  L+   ++ TA+   YAKC
Sbjct: 286 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 345

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I  A ++F E  +  ++ +TW ++IS  A HG+       +++M  + V PD +TFLG
Sbjct: 346 GKITKAIQVFQE--LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLG 403

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL+AC + GLVEEGR  F +M   +   P  +HY+ MV+LLGRAG ++EA EL+K MP +
Sbjct: 404 LLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIE 463

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
            DA VWG L  AC++H    + E  A KL+ M+P ++G YVLL+N+Y  A  W    K R
Sbjct: 464 ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXR 523

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL--ELEIME 715
             +R RG++KTPGCS IE+  +V+EF   D+SHPQ++ IY  L  L  +LE++E
Sbjct: 524 KLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVE 577



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 231/484 (47%), Gaps = 24/484 (4%)

Query: 56  IILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           ++L GL ++   SS LI   + +    L     +  +  +PN+  +   ++         
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 114 KTLLVYKQ-MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           + +++YK+ +      P   TYP + ++C+ L     G +I   V+ LGFDS   V +A+
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 173 VEFYIKCDGGFENEKGMIQRK-FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           +   + C G  +  + M  +   +DL S WNS+I+  V+ G + ++   ++ M++EG + 
Sbjct: 121 IHLLVSC-GDLDGARKMFDKSCVRDLVS-WNSMINGYVRRGWAYEALNFYREMKVEGIKP 178

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK--- 288
           D  T+I ++ S  +L+ L+LGR  HC    +     + +  AL+ MY K  +LE A+   
Sbjct: 179 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238

Query: 289 -------------MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
                        MLFD+M DKD V WN MI  Y  +   KE+L L   M       D  
Sbjct: 239 DSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEV 298

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T ++ +S+ S +  ++ G  +H  + ++     V++  +LIDMY +C  +  A ++F  +
Sbjct: 299 TMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQEL 358

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-V 454
             +  ++W+++I G   H  +  A+  FSEM    V  D VT + +L AC + G +E   
Sbjct: 359 PGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 418

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           KY    S K  L+      + +     + G +E A EL     I++ D + W ++  A  
Sbjct: 419 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA-DAVVWGALFFACR 477

Query: 515 KHGD 518
            HG+
Sbjct: 478 IHGN 481



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 33/279 (11%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL------KNL-- 106
           YI  +GL   + L++ L+D Y   G L  ++++F+S+T+   + + T+L      K++  
Sbjct: 205 YIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVP 264

Query: 107 --SKFGEY------EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
             +  G Y      ++ L ++ +M   ++ P E T    + +CS L     G  IH  + 
Sbjct: 265 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIE 324

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK---FKDLKSR----WNSLISLAVQN 211
           K        +G AL++ Y KC        G I +    F++L  R    W ++IS    +
Sbjct: 325 KHELSLNVALGTALIDMYAKC--------GKITKAIQVFQELPGRNSLTWTAIISGLALH 376

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSV 270
           G +  +   F  M       D  T + LL +      +E GR     ++   +    L  
Sbjct: 377 GNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKH 436

Query: 271 NTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
            + ++ +  +   LE+A+ L   M  + D VVW  +  A
Sbjct: 437 YSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFA 475


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 198/631 (31%), Positives = 340/631 (53%), Gaps = 18/631 (2%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI----R 139
           ++ +F+ +   + + +  I+       +  + L ++ +M LQS    +   PF++    +
Sbjct: 68  ARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRID---PFLLSLGLK 124

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C   L+++ G  +H   VK G  +   VG AL++ Y+K       E G   + F ++ +
Sbjct: 125 TCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKI-----GEIGRSCKVFDEMPT 179

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    W ++I+  V+ G SE     F  M     E+DS      L+++ +  +L  GR +
Sbjct: 180 RNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSI 239

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +   F ++  V  +L +MY+K   L+     F KM   D V W  +++AY Q G  
Sbjct: 240 HTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKE 299

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
              L+    M  S    + +T  A +S  +    ++WG+Q+HA+VL  G    +SV NS+
Sbjct: 300 DCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSI 359

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           + +Y +C +L    K+F S+K + +++WS++I  Y       EA    S M+ EG + + 
Sbjct: 360 MTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNE 419

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
             + ++L  C ++  LE  K LH + + +GL   S V +A+ I YAKCG I  A ++F +
Sbjct: 420 FALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMD 479

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
              D  DII+W +MIS YA+HG   +  +L+  +++  +RPD +TF+G+LTAC +AG+V+
Sbjct: 480 SWKD--DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVD 537

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G   F  M + Y   PS+EHY  M++LL RAG + +A  L++ MP + D  VW  LL A
Sbjct: 538 LGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRA 597

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H + +  +  A +++ ++P  AG ++ L+NI+AA GKW   A +R  ++ +G+ K P
Sbjct: 598 CRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEP 657

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           G S +++   V  F + D+SHPQ + IY IL
Sbjct: 658 GWSSVKVKDSVFAFVSGDRSHPQGEDIYNIL 688


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 213/642 (33%), Positives = 351/642 (54%), Gaps = 15/642 (2%)

Query: 51  IHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +HA   R+ +L G   ++ ++S+L+  YA  G +  + ++F+ +   + + +  ++    
Sbjct: 129 VHAYSVRFGLLEG-DGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCV 187

Query: 108 KFGEYEKTLLVYKQMALQS----MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
             G+  + L    +M   +      P   T    + +C  L +   G  +H   VK G  
Sbjct: 188 CNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVG 247

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  +L   Y KCD   +      +   KDL S W SLI    + G +EK+ ELF  
Sbjct: 248 HCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVS-WTSLIGAYCRAGHAEKAVELFLG 306

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G + D   +  LL        +  G+  H   V  +F   + +  AL+SMY+K   
Sbjct: 307 MEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQ 366

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAA 340
           ++ A  +F  +  +D   W+ M+ AY ++G   + LEL   M    +  F  D  + I+ 
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +SS S +  +  G+  H   +++ +    SV N+LI MY  C + + ARKIF  VKTK V
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+WS++I  Y     S +AL L+ +M  EGV+ +  T+++++ +C N+ ALEH + +H +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
              +GL    S+ TA+   Y KCG + +A ++FD   +  +D++TWN MIS Y  HG+  
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDS--MLERDVVTWNVMISGYGMHGEAI 604

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           Q  KL++ M++ +V+P+ +TFL +L+AC +AGLV++GR +F  M+E Y  EP+ +HYA M
Sbjct: 605 QALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACM 663

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLG++GH+ EA ++V  MP +PD  +WG LL ACKMH   E+    A+K  + +PEN 
Sbjct: 664 VDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEND 723

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           G Y+L+SN Y +A KWN + K+R  +++ G++K+ G S I+I
Sbjct: 724 GYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 302/622 (48%), Gaps = 28/622 (4%)

Query: 28  PHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           P + A H F           L  +HA   +  GL      ++ L+ +Y++ GL +L+   
Sbjct: 5   PPLAALHRFLASPSPPPLPSLLTLHA-LAVTSGLSPRPDFAAKLVSAYSSAGLPALAALA 63

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F +   P++ L+ ++L++  +  ++  TL  +++M      P+  T P V  + + L   
Sbjct: 64  FAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGAL 123

Query: 148 ISGEKIHAQVVKLGF---DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
             G  +HA  V+ G    D    V  +LV  Y +C G   +      R F ++  R    
Sbjct: 124 PVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARC-GSVRDA----VRLFDEMPERDVVA 178

Query: 201 WNSLISLAVQNGKSEKSFE-LFKLMRME---GAEFDSGTLINLLRSTVELKSLELGRIVH 256
           W ++IS  V NG+  +    L +++R     GA  +S T+ + L +   L  L +G  +H
Sbjct: 179 WTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLH 238

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              V +      SV ++L SMY+K  S EDA++LF ++ +KD V W  +I AY ++G  +
Sbjct: 239 GFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAE 298

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           +++EL + M  SG + D       ++ +     +  GK  HA ++R      V + N+LI
Sbjct: 299 KAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALI 358

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL---EGVEV 433
            MY +C+ ++ A  +F  +  +   SWSSM+  Y      L+ L L+ EM+    +  E 
Sbjct: 359 SMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEY 418

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D  ++I+I+ +C  +G L   +  H YS+K      SSV  A+   Y +CG  ++A ++F
Sbjct: 419 DTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF 478

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
               + +KD++TW+++IS+Y+  G       LY QM    V+P+  T + ++++C N   
Sbjct: 479 G--MVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAA 536

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +E G +I   +K+  G E       ++V++  + G +  AR++   M  + D   W  ++
Sbjct: 537 LEHGELIHSHVKD-VGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMI 594

Query: 614 SACKMHSETELAELTAEKLISM 635
           S   MH E     + A KL SM
Sbjct: 595 SGYGMHGEA----IQALKLFSM 612


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 213/642 (33%), Positives = 351/642 (54%), Gaps = 15/642 (2%)

Query: 51  IHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +HA   R+ +L G   ++ ++S+L+  YA  G +  + ++F+ +   + + +  ++    
Sbjct: 129 VHAYSVRFGLLEG-DGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCV 187

Query: 108 KFGEYEKTLLVYKQMALQS----MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
             G+  + L    +M   +      P   T    + +C  L +   G  +H   VK G  
Sbjct: 188 CNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVG 247

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  +L   Y KCD   +      +   KDL S W SLI    + G +EK+ ELF  
Sbjct: 248 HCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVS-WTSLIGAYCRAGHAEKAVELFLG 306

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G + D   +  LL        +  G+  H   V  +F   + +  AL+SMY+K   
Sbjct: 307 MEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQ 366

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAA 340
           ++ A  +F  +  +D   W+ M+ AY ++G   + LEL   M    +  F  D  + I+ 
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +SS S +  +  G+  H   +++ +    SV N+LI MY  C + + ARKIF  VKTK V
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+WS++I  Y     S +AL L+ +M  EGV+ +  T+++++ +C N+ ALEH + +H +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
              +GL    S+ TA+   Y KCG + +A ++FD   +  +D++TWN MIS Y  HG+  
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFD--SMLERDVVTWNVMISGYGMHGEAI 604

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           Q  KL++ M++ +V+P+ +TFL +L+AC +AGLV++GR +F  M+E Y  EP+ +HYA M
Sbjct: 605 QALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACM 663

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLG++GH+ EA ++V  MP +PD  +WG LL ACKMH   E+    A+K  + +PEN 
Sbjct: 664 VDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEND 723

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           G Y+L+SN Y +A KWN + K+R  +++ G++K+ G S I+I
Sbjct: 724 GYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 302/622 (48%), Gaps = 28/622 (4%)

Query: 28  PHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           P + A H F           L  +HA   +  GL      ++ L+ +Y++ GL +L+   
Sbjct: 5   PPLAALHRFLASPSPPPLPSLLTLHA-LAVTSGLSPRPDFAAKLVSAYSSAGLPALAALA 63

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F +   P++ L+ ++L++  +  ++  TL  +++M      P+  T P V  + + L   
Sbjct: 64  FAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGAL 123

Query: 148 ISGEKIHAQVVKLGF---DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
             G  +HA  V+ G    D    V  +LV  Y +C G   +      R F ++  R    
Sbjct: 124 PVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARC-GSVRDA----VRLFDEMPERDVVA 178

Query: 201 WNSLISLAVQNGKSEKSFE-LFKLMRME---GAEFDSGTLINLLRSTVELKSLELGRIVH 256
           W ++IS  V NG+  +    L +++R     GA  +S T+ + L +   L  L +G  +H
Sbjct: 179 WTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLH 238

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              V +      SV ++L SMY+K  S EDA++LF ++ +KD V W  +I AY ++G  +
Sbjct: 239 GFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAE 298

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           +++EL + M  SG + D       ++ +     +  GK  HA ++R      V + N+LI
Sbjct: 299 KAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALI 358

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL---EGVEV 433
            MY +C+ ++ A  +F  +  +   SWSSM+  Y      L+ L L+ EM+    +  E 
Sbjct: 359 SMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEY 418

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D  ++I+I+ +C  +G L   +  H YS+K      SSV  A+   Y +CG  ++A ++F
Sbjct: 419 DTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF 478

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
               + +KD++TW+++IS+Y+  G       LY QM    V+P+  T + ++++C N   
Sbjct: 479 G--MVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAA 536

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +E G +I   +K+  G E       ++V++  + G +  AR++   M  + D   W  ++
Sbjct: 537 LEHGELIHSHVKD-VGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMI 594

Query: 614 SACKMHSETELAELTAEKLISM 635
           S   MH E     + A KL SM
Sbjct: 595 SGYGMHGEA----IQALKLFSM 612


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 295/515 (57%), Gaps = 8/515 (1%)

Query: 204 LISLAVQNGKSEKSFELFKLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +IS  V+N   E S  +F  M +  G  FD  T+I +L +  EL+ L+LG  + C+A+  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F   +S+ T L+S++SK   +E A++LF ++  KD +  N MIS +  +G  ++S+ L 
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             ++ SG R    T +  +   S   +      +H   ++ G     SV  +L  +YC  
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
            ++  AR++FD    KT+ SW++MI G   +  +  A+ LF  M+   V  + VT+ +IL
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  IGAL   +++H         S   V+TA+   YAKCG I +A ELFD   +  K+
Sbjct: 241 SACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFD--LMPEKN 298

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            +TWN+MIS Y  HG   +  KL+  M  S V+P  +TFL +L AC +AGLV+EG  IF 
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M   +G+EP  EHYA MV++LGRAG + +A E +K MP +P   VWG LL AC +H +T
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDT 418

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            LA + +EKL  ++PEN G YVL+SNIY+   K+   A +R   + + L KTPGC+ IEI
Sbjct: 419 NLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEI 478

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELEIMEGR 717
           G++ H F + DQSHPQ+ AIY      EL+ + G+
Sbjct: 479 GQVPHVFTSGDQSHPQSKAIYA-----ELDKLTGK 508



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 148/315 (46%), Gaps = 13/315 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G + ++ L + LI  ++  G + +++ +F  I   + +    ++   +  GE E ++ ++
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           K++       +  T   +I   S          IH   VKLG  S   V  AL   Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +      +   +   K L S WN++IS   QNG ++ +  LF+ M+      +  T+ ++
Sbjct: 181 NEMIFARQLFDESAEKTLAS-WNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L +  ++ +L LG  VH +   + F  ++ V+TAL+ MY+K  S+  A+ LFD M +K+ 
Sbjct: 240 LSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN MIS Y   G  +E+L+L   M+ S  +    T ++ + + S           HA 
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACS-----------HAG 348

Query: 360 VLRNGSD-YQVSVHN 373
           +++ G   +   VH+
Sbjct: 349 LVKEGDGIFHTMVHD 363


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 225/689 (32%), Positives = 353/689 (51%), Gaps = 30/689 (4%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANL-GLLSLSQQVFNSITSPNS 96
           L+ L   P+HL Q+ A  +       +   ++ L+  YA+L    S   ++F +   P+ 
Sbjct: 26  LVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLRLFRAFPCPDR 85

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL-------DFIS 149
            L   +L++L     +              ++P+ D++ F   + S          D  +
Sbjct: 86  FLRNALLRSLPSLRPH-------------LLFPSPDSFSFAFAATSLSSSCSSRGNDAAA 132

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
              +H   V  G+ +   V  AL + Y K   G +  K        D    WN+L++   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPD-TILWNTLLA--- 188

Query: 210 QNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
                 ++ E F  M   G    DS TL + LR+  E   + +GR VH   V     +  
Sbjct: 189 -GLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHE 247

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V T L+S+YSK   ++ A+ LFD+M + D V +N +IS Y  +G  + S+EL   +  S
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G+R +  T +A +   S   +    + +HA V++   D    V  +L  +YC   D+  A
Sbjct: 308 GWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESA 367

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R IFD++  KT+ SW++MI GY  +  +  A+ LF  M+   V+ + +TI + L AC ++
Sbjct: 368 RSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHL 427

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           GAL   K++H    K  L     V TA+   YAKCG I  A  +FD  ++D+K++++WN+
Sbjct: 428 GALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFD--RMDNKNVVSWNA 485

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MIS Y  HG  ++  KLY  M  + + P   TFL ++ AC + GLV+EG+ +F+ M   Y
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEY 545

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLLSACKMHSETELAEL 627
              P  EH   MV+LLGRAG ++EA EL+ + P       VWG LL AC +H  ++LA+L
Sbjct: 546 RITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKL 605

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            ++KL  ++ ENAG YVLLSN+Y +   ++  A +R   + R L KTPGC+ IEIG   H
Sbjct: 606 ASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPH 665

Query: 688 EFWAADQSHPQADAIYTILGILELEIMEG 716
            F A D  HPQ++AIY+ L  L  +++E 
Sbjct: 666 VFMAGDHLHPQSEAIYSYLERLTAKMIEA 694


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/648 (31%), Positives = 343/648 (52%), Gaps = 9/648 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C     L+ +HAR ++ HGL + L   + L+  YA LG L+ +++V +    P++ 
Sbjct: 34  LLPACTTLPSLRALHAR-LLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAY 92

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY--PFVIRSCSCLLDFISGEKIHA 155
            Y   L   +  G + + + V++ M  +     ED       +++     DF  G ++H 
Sbjct: 93  TYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHC 152

Query: 156 QVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
            VVK G  D F  V + LV+ Y K  G  +N + +  R        W S++S  +QNG +
Sbjct: 153 DVVKAGGGDLF--VMNNLVDMYAK-GGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLA 209

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           ++   LF  MR E       T+ ++L +   L SL  GR++H   +      +  +  A+
Sbjct: 210 KEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAM 269

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L MY K    EDA+ +FD++S  D V+W  MI  Y Q+G P ++L L +         + 
Sbjct: 270 LDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNS 329

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T    +S+ + ++N+  G+ +H   ++ G+     V N+L+DMY +C+ L+ A+ IF  
Sbjct: 330 VTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGR 389

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           V  K VV+W+S+I GY  +D   +AL LFS M+++G   D ++++N L ACV +G L   
Sbjct: 390 VLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIG 449

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K  H Y++K    S   VNTA+   Y KC  +  A  +F E  ++ ++ +TW +MI  Y 
Sbjct: 450 KCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSE--MNDRNTVTWGAMIGGYG 507

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
             GD +    L+ +M + +++P+   F  +L+ C + G+V  G+  F+ M   +   PS 
Sbjct: 508 MQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSM 567

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           +HYA MV++L RAG+++EA E ++ MP + D  +W   L  CK+HS  E AE    +++ 
Sbjct: 568 KHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMV 627

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           + P+     V++SN+Y + G+W+    +R  +++RGL K PGCS + +
Sbjct: 628 LHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSVGL 675


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 216/683 (31%), Positives = 357/683 (52%), Gaps = 10/683 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C +   + Q+H++ + + GL  +  + + L   YA    L  + ++F         
Sbjct: 10  LLETCCSKISITQLHSQCLKV-GLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVY 68

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQM---ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           L+  +L++    G++ +TL ++ QM   A+    P   T    ++SCS L     G+ IH
Sbjct: 69  LWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIH 128

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
              +K   DS   VG AL+E Y KC G   +   +     K     W S+I+   QNG  
Sbjct: 129 G-FLKKKIDSDMFVGSALIELYSKC-GQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSP 186

Query: 215 EKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           E +   F +++ +E    D  TL++   +  +L    LGR VH       F   L +  +
Sbjct: 187 ELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANS 246

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           +L++Y K  S+  A  LF +M  KD + W+ M++ Y  +G    +L L   M+      +
Sbjct: 247 ILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELN 306

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T I+A+ + ++  N+E GKQ+H   +  G +  ++V  +L+DMY +C     A ++F+
Sbjct: 307 RVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFN 366

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K VVSW+ +  GY     + ++L +F  M   G   D + ++ IL A   +G ++ 
Sbjct: 367 RMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQ 426

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              LH +  K G ++   +  ++   YAKC  I+ A ++F  + +   D++TW+S+I+AY
Sbjct: 427 ALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVF--KGLRHTDVVTWSSIIAAY 484

Query: 514 AKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
             HG   +  KL  QM   SDV+P+ +TF+ +L+AC +AGL+EEG  +F  M   Y   P
Sbjct: 485 GFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMP 544

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           + EHY  MV+LLGR G +D+A +++ +MP +    VWG LL AC++H   ++ EL A  L
Sbjct: 545 NIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNL 604

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             ++P +AG Y LLSNIY     W+  AK+RT +++  LKK  G S +EI   VH F A+
Sbjct: 605 FLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIAS 664

Query: 693 DQSHPQADAIYTILGILELEIME 715
           D+ H ++D IY +L  L+  + E
Sbjct: 665 DRFHGESDQIYEMLRKLDARMRE 687


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/469 (38%), Positives = 285/469 (60%), Gaps = 3/469 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL+S V  K++E G+ +H          +  + T L+++Y    SL +A +LFD++S +
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +WN+MI  Y  +G  + ++ L   M   G   D FT    + + S +  +E GK++H
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
            +V+R+G +  V V  +LIDMY +C  +  AR++FD +  + VV W+SM+  Y  + Q  
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           E+L L   M   G++    T +  + A  + G L   K LHGYS + G  S   V TA+ 
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALM 245

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G + +A  LF  E ++ K +++WN+MI+ YA HG  ++   L+ +MK   V PD
Sbjct: 246 DMYAKSGSVNVARSLF--ELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPD 302

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITF+G+L AC + GL+ EG++ F+ M   +   P+ +HY  M++LLG  G ++EA +L+
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
            +M  +PDA VWG LL +CK+H   E+ EL  EKL+ +EP++ GNYV+LSN+YA AGKW+
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           GVA++R  + ++GLKK+  CSWIE+G  VH F + D SHP+++AIY  L
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAEL 471



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 215/464 (46%), Gaps = 41/464 (8%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +++SC        G+++HA++ ++G      +   LV  Y  C+    N   +  R 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNS-LTNAHLLFDRI 62

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            K     WN +I     NG  E +  L+  MR  G   D  T   +L++   L ++E G+
Sbjct: 63  SKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGK 122

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H   + S    D+ V  AL+ MY+K   +E A+ +FDK+ ++D V WN M++ Y Q+G
Sbjct: 123 KIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNG 182

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
            P ESL L   M  +G +    T + ++++ +    +  GK++H    R+G +    V  
Sbjct: 183 QPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKT 242

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +L+DMY +   +N AR +F+ ++ K VVSW++MI GY  H  + EAL LF EMK + V  
Sbjct: 243 ALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLP 301

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D +T + +L AC + G L   K +H  SM      +S  N    + +  C          
Sbjct: 302 DHITFVGVLAACSHGGLLNEGK-MHFRSM------ISDFNIWPTVQHYTC---------- 344

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
                          MI      G   + +KL  +M+   V PD   +  LL +C   G 
Sbjct: 345 ---------------MIDLLGHCGRLEEAYKLIMEMR---VEPDAGVWGALLHSCKIHGN 386

Query: 554 VEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEAREL 596
           VE G +  +++ E    EP    +Y  + N+  +AG  D    L
Sbjct: 387 VEMGELALEKLVE---LEPDDGGNYVILSNMYAQAGKWDGVARL 427



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 184/367 (50%), Gaps = 5/367 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HAR I   G+  N +L++ L++ Y     L+ +  +F+ I+  N  L+  +++  + 
Sbjct: 21  KQLHAR-ICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAW 79

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G YE  + +Y QM    + P + T+PFV+++CS L     G+KIH  V++ G +S   V
Sbjct: 80  NGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFV 139

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G AL++ Y KC G  E+ + +  +  +     WNS+++   QNG+ ++S  L ++M   G
Sbjct: 140 GAALIDMYAKC-GCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNG 198

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +   GT +  + ++ +   L  G+ +H  +    F  +  V TAL+ MY+K  S+  A+
Sbjct: 199 LKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVAR 258

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LF+ + +K  V WN MI+ Y   G   E+L+L   M +     D  T +  +++ S   
Sbjct: 259 SLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGG 317

Query: 349 NIEWGKQMHANVLRNGSDYQVSVH-NSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSM 406
            +  GK    +++ + + +    H   +ID+   C  L  A K+   ++ +     W ++
Sbjct: 318 LLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGAL 377

Query: 407 IKGYVTH 413
           +     H
Sbjct: 378 LHSCKIH 384


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 299/516 (57%), Gaps = 3/516 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I     +     + E++  M+  G   D  TL  +L++   +  LE+G+ VH    
Sbjct: 137 WNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIF 196

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D+ V   L+++Y+K   +E A+++F+ + D++ V W  MIS Y Q+G P E+L 
Sbjct: 197 RLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALR 256

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M +   + D    ++ + + + ++++E GK +H  V++ G +++  +  SL  MY 
Sbjct: 257 IFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYA 316

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  AR  FD ++   V+ W++MI GY  +  + EA+ LF EM  + +  D +T+ +
Sbjct: 317 KCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRS 376

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            + AC  +G+L+  K++  Y  K    +   VNTA+   +AKCG +++A E+FD  +   
Sbjct: 377 AILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFD--RTLD 434

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD++ W++MI  Y  HG       L+  MKQ+ V P+ +TF+GLLTAC ++GLVEEG  +
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL 494

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  MK  YG E   +HYA +V+LLGR+GH++EA + +  MP +P   VWG LL ACK++ 
Sbjct: 495 FHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYR 553

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
              L E  AE+L S++P N G+YV LSN+YA++  W+ VAK+R  +R++GL K  G S I
Sbjct: 554 HVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLI 613

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           EI   +  F   D+SHP+   I+  L  LE  + E 
Sbjct: 614 EINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEA 649



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/422 (30%), Positives = 229/422 (54%), Gaps = 14/422 (3%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SLL+   + +HL QIHA+ +++ GL ++  L +  +++  N+G +  +++VF+    P+ 
Sbjct: 76  SLLDHSVHKRHLNQIHAQ-LVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSV 134

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            L+  I++  S    +   + +Y +M    + P   T P V+++CS +     G+++H Q
Sbjct: 135 FLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQ 194

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
           + +LGF+S   V + LV  Y KC G  E  + +    F+ L  R    W S+IS   QNG
Sbjct: 195 IFRLGFESDVFVQNGLVALYAKC-GRVEQARIV----FEGLDDRNIVSWTSMISGYGQNG 249

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH-CVAVVS-DFCKDLSV 270
              ++  +F  MR    + D   L+++LR+  +++ LE G+ +H CV  +  +F  DL +
Sbjct: 250 LPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI 309

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L +MY+K   +  A+  FD+M   + ++WN MIS Y ++G+  E++ L   M+    
Sbjct: 310 --SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI 367

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           R D  T  +A+ + + + +++  K M   + +      V V+ +LIDM+ +C  ++ AR+
Sbjct: 368 RTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD    K VV WS+MI GY  H +  +A+ LF  MK  GV  + VT + +L AC + G 
Sbjct: 428 VFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGL 487

Query: 451 LE 452
           +E
Sbjct: 488 VE 489



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 203/398 (51%), Gaps = 8/398 (2%)

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G +FDS    +LL  +V  + L     +H   VVS   +   + T  ++    +  +  A
Sbjct: 67  GFDFDS-FFSSLLDHSVHKRHLNQ---IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYA 122

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD+  +    +WN +I  Y    F  +++E+   M  SG   D FT    + + S +
Sbjct: 123 RKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGV 182

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +E GK++H  + R G +  V V N L+ +Y +C  +  AR +F+ +  + +VSW+SMI
Sbjct: 183 PVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMI 242

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY  +   +EALR+F +M+   V+ D++ ++++L A  ++  LE  K +HG  +K+GL 
Sbjct: 243 SGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLE 302

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               +  ++   YAKCG + +A   FD+ +I   +++ WN+MIS YAK+G  ++   L+ 
Sbjct: 303 FEPDLLISLTAMYAKCGQVMVARSFFDQMEI--PNVMMWNAMISGYAKNGYTNEAVGLFQ 360

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M   ++R D IT    + AC   G ++  + +   + ++  Y        +++++  + 
Sbjct: 361 EMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKT-EYRNDVFVNTALIDMFAKC 419

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           G +D ARE V D     D  VW  ++    +H   + A
Sbjct: 420 GSVDLARE-VFDRTLDKDVVVWSAMIVGYGLHGRGQDA 456


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 215/700 (30%), Positives = 367/700 (52%), Gaps = 29/700 (4%)

Query: 38  LLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L +C   E+     QIH   ++  G   +++ +S L+D YA       S +VF  I   
Sbjct: 144 ILKVCSFLEDTSLGMQIHG-IVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 202

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           NS+ +  I+    +       L  +K+M   +   ++  Y  V+RSC+ L +   G ++H
Sbjct: 203 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 262

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F +   V  A ++ Y KCD   ++ + +        +  +N++I+   Q    
Sbjct: 263 AHALKSDFAADGIVRTATLDMYAKCDN-MQDAQILFDNSENLNRQSYNAMITGYSQEEHG 321

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            K+  LF  +   G  FD  +L  + R+   +K L  G  ++ +A+ S    D+ V  A 
Sbjct: 322 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 381

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY K  +L +A  +FD+M  +D V WN +I+A+ Q+G   E+L L + M+RS    D 
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI--- 391
           FT   ++    T  ++ +G ++H++++++G     SV  SLIDMY +C  +  A KI   
Sbjct: 442 FT-FGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500

Query: 392 -------------FDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
                         + +  K +    VSW+S+I GYV  +QS +A  LF+ M   G+  D
Sbjct: 501 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 560

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T   +L  C N+ +    K +H   +K  L S   + + +   Y+KCG +  +  +F 
Sbjct: 561 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMF- 619

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            EK   +D +TWN+MI  YA HG   +  +L+ +M   +++P+ +TF+ +L AC + GL+
Sbjct: 620 -EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 678

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           ++G   F  MK  YG +P   HY++MV++LG++G +  A EL+++MPF+ D  +W  LL 
Sbjct: 679 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 738

Query: 615 ACKMH-SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            C +H +  E+AE     L+ ++P+++  Y LLSN+YA AG W  V+ +R  +R   LKK
Sbjct: 739 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 798

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            PGCSW+E+   +H F   D++HP+ + IY  LG++  E+
Sbjct: 799 EPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEM 838



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 169/642 (26%), Positives = 307/642 (47%), Gaps = 50/642 (7%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  + +I+ Y+    +  +   FN +   + + + ++L    + GE  K++ V+  M
Sbjct: 70  RDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM 129

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             + +     T+  +++ CS L D   G +IH  VV++G D+      AL++ Y K    
Sbjct: 130 GREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRF 189

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            E+      R F+ +  +    W+++I+  VQN     + + FK M+   A        +
Sbjct: 190 VES-----LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYAS 244

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +LRS   L  L LG  +H  A+ SDF  D  V TA L MY+K  +++DA++LFD   + +
Sbjct: 245 VLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLN 304

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
           R  +N MI+ Y Q     ++L L   ++ SG   D  +      + + +K +  G Q++ 
Sbjct: 305 RQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYG 364

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +++     V V N+ IDMY +C+ L  A ++FD ++ +  VSW+++I  +  + +  E
Sbjct: 365 LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYE 424

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            L LF  M    +E D  T  +IL AC   G+L +   +H   +K G+ S SSV  ++  
Sbjct: 425 TLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLID 483

Query: 479 SYAKCGCIEMA--------------GELFDEEKIDSKDI----ITWNSMISAYAKHGDWS 520
            Y+KCG IE A              G + + EK+ +K +    ++WNS+IS Y       
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 543

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVN---AGLVEE--GRIIFKEMKESYGYEPSQE 575
               L+T+M +  + PD  T+  +L  C N   AGL ++   ++I KE++    Y  S  
Sbjct: 544 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDV-YICS-- 600

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI-- 633
              ++V++  + G + ++R L+ +   + D   W  ++     H + E A    E++I  
Sbjct: 601 ---TLVDMYSKCGDLHDSR-LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILE 656

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL----RDRGL 671
           +++P    N+V   +I  A      + K   +     RD GL
Sbjct: 657 NIKP----NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGL 694


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 225/700 (32%), Positives = 371/700 (53%), Gaps = 20/700 (2%)

Query: 27  RPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           RP  + T S SLL  C   +H +    +HAR I    +  + +L ++LI  Y+  G L+ 
Sbjct: 58  RPMDSVTFS-SLLKSCIRARHFRLGKLVHARLIEFE-IEPDSVLYNSLISLYSKSGDLTK 115

Query: 84  SQQVFNSIT---SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           ++ VF ++      + + +  ++      G     + ++ +     + P +  Y  VIR+
Sbjct: 116 AKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRA 175

Query: 141 CSCLLDFIS-GEKIHAQVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           CS   DF+  G  I   ++K G F+S   VG +L++ ++K +  FEN   +  +  +   
Sbjct: 176 CSNS-DFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             W  +I+  +Q G   ++   F  M + G E D  TL ++  +  EL++L LGR +H  
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSW 294

Query: 259 AVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMISAYYQS-GF 314
           A+ S    D  V  +L+ MY+K +   S++D + +FD+M D   + W  +I+ Y Q+   
Sbjct: 295 AIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNL 352

Query: 315 PKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             E++ L   M+  G    + FT  +A  +   + +   GKQ+  +  + G     SV N
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSN 412

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           S+I M+ +C+ +  AR  F+S+  K +VS+++ + G   +     A  L SE+    + V
Sbjct: 413 SVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGV 472

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
              T  ++L    N+G+L   + +H   +KLGL+    V  A+   Y+KCG I+ A  +F
Sbjct: 473 SAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
               +D++++I+W SMI+ +AKHG   +  + + QM +  V+P+ +T++ +L+AC + GL
Sbjct: 533 --SLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGL 590

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V EG   F  M E +  +P  EHYA MV+LL RAG + +A E +  MPF+ D  VW   L
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            AC++HS TEL +L A K++  +P     Y+ LSNIYA+AGKW    +MR  +++R L K
Sbjct: 651 GACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVK 710

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             GCSWIE+G  VH+F+  D SHP A  IY  L  L  EI
Sbjct: 711 EGGCSWIEVGDKVHKFYVGDTSHPNAHQIYDELDWLITEI 750


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 217/700 (31%), Positives = 367/700 (52%), Gaps = 87/700 (12%)

Query: 31  TATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           T T+S S+L LC   +     +++H+  I  + +  +  L   L+  YA  G L   ++V
Sbjct: 99  TKTYS-SVLQLCAGLKSFTDGKKVHS-IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV 156

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F+++   N  L+  ++   +K G++++++ ++K M  +                      
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG--------------------- 195

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
           I G++  +      F+ FD +          CD              +D+ S WNS+IS 
Sbjct: 196 IEGKRPES-----AFELFDKL----------CD--------------RDVIS-WNSMISG 225

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            V NG +E+   ++K M   G + D  T+I++L       +L LG+ VH +A+ S F + 
Sbjct: 226 YVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERR 285

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           ++ +  LL MYSK   L+ A  +F+KM +++ V W  MI+ Y + G    +++LL  M +
Sbjct: 286 INFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK 345

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G + D+    + + + +   +++ GK +H  +  N  +  + V N+L+DMY +C  +  
Sbjct: 346 EGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEA 405

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  +F ++  K ++SW++MI                 E+K      D  T+  +LPAC +
Sbjct: 406 ANSVFSTMVVKDIISWNTMI----------------GELK-----PDSRTMACVLPACAS 444

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + ALE  K +HGY ++ G +S   V  A+   Y KCG + +A  LFD   I SKD+++W 
Sbjct: 445 LSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD--MIPSKDLVSWT 502

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            MI+ Y  HG  ++    + +M+ + + PD ++F+ +L AC ++GL+E+G   F  MK  
Sbjct: 503 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +  EP  EHYA MV+LL R G++ +A E ++ +P  PDA +WG LL  C+ + + ELAE 
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEK 622

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            AE++  +EPEN+G YVLL+NIYA A KW  V ++R  +  +GL+K PGCSWIEI   V+
Sbjct: 623 VAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVN 682

Query: 688 EFWAADQ-SHPQADAIYTILGILELEIMEGRRESSEELKF 726
            F + +  SHP +  I ++L  +       RR+  EE  F
Sbjct: 683 LFVSGNNSSHPHSKNIESLLKKM-------RRKMKEEGHF 715



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 226/506 (44%), Gaps = 83/506 (16%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+ I    Q G  E + EL  + +   +E ++ T  ++L+    LKS   G+ VH +  
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKK--SELETKTYSSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D ++   L+S Y+    L++ + +FD M  K+  +WN M+S Y + G  KES+ 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 321 LLMCMVRSGFRA------------------------------------------------ 332
           L   MV  G                                                   
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 333 ---DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              DL T I+ +   +    +  GK +H+  +++  + +++  N+L+DMY +C DL+ A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F+ +  + VVSW+SMI GY    +S  A++L  +M+ EGV++D V I +IL AC   G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L++ K +H Y     + S   V  A+   YAKCG +E A  +F    +  KDII+WN+M
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVV--KDIISWNTM 424

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I                      +++PD  T   +L AC +   +E G+ I   +  + G
Sbjct: 425 I---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRN-G 462

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAEL 627
           Y   +    ++V+L  + G +  AR L   +P K D   W  +++   MH      +A  
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATF 521

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAA 653
              +   +EP+       +S +YA +
Sbjct: 522 NEMRDAGIEPDEVS---FISILYACS 544



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 43/264 (16%)

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIF-----DSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           D+QV+ +N+ I  +C+  DL  A ++        ++TKT   +SS+++         +  
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETKT---YSSVLQLCAGLKSFTDGK 119

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF--- 477
           ++ S +K   V VD    + ++      G L+  + +         +++   N  ++   
Sbjct: 120 KVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV--------FDTMEKKNVYLWNFM 171

Query: 478 -ISYAKCG------CI--------------EMAGELFDEEKIDSKDIITWNSMISAYAKH 516
              YAK G      C+              E A ELFD  K+  +D+I+WNSMIS Y  +
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFD--KLCDRDVISWNSMISGYVSN 229

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +   +Y QM    +  DL T + +L  C N+G +  G+ +     +S  +E     
Sbjct: 230 GLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINF 288

Query: 577 YASMVNLLGRAGHMDEARELVKDM 600
             +++++  + G +D A  + + M
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKM 312


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 214/700 (30%), Positives = 364/700 (52%), Gaps = 29/700 (4%)

Query: 38  LLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L +C   E+     QIH   ++  G   +++ +S L+D YA       S +VF  I   
Sbjct: 186 ILKVCSFLEDTSLGMQIHG-IVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 244

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           NS+ +  I+    +       L  +K+M   +   ++  Y  V+RSC+ L +   G ++H
Sbjct: 245 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLH 304

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  +K  F +   V  A ++ Y KCD   ++ + +        +  +N++I+   Q    
Sbjct: 305 AHALKSDFAADGIVRTATLDMYAKCDN-MQDAQILFDNSENLNRQSYNAMITGYSQEEHG 363

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            K+  LF  +   G  FD  +L  + R+   +K L  G  ++ +A+ S    D+ V  A 
Sbjct: 364 FKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAA 423

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY K  +L +A  +FD+M  +D V WN +I+A+ Q+G   E+L L + M+RS    D 
Sbjct: 424 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 483

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT   ++    T  ++ +G ++H++++++G     SV  SLIDMY +C  +  A KI   
Sbjct: 484 FT-FGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 542

Query: 395 VKTKT--------------------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
              +                      VSW+S+I GYV  +QS +A  LF+ M   G+  D
Sbjct: 543 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 602

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T   +L  C N+ +    K +H   +K  L S   + + +   Y+KCG +  +  +F 
Sbjct: 603 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMF- 661

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            EK   +D +TWN+MI  YA HG   +  +L+ +M   +++P+ +TF+ +L AC + GL+
Sbjct: 662 -EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 720

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           ++G   F  MK  YG +P   HY++MV++LG++G +  A EL+++MPF+ D  +W  LL 
Sbjct: 721 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 780

Query: 615 ACKMH-SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            C +H +  E+AE     L+ ++P+++  Y LLSN+YA AG W  V+ +R  +R   LKK
Sbjct: 781 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKK 840

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            PGCSW+E+   +H F   D++HP+ + IY  LG++  E+
Sbjct: 841 EPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEM 880



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 169/642 (26%), Positives = 307/642 (47%), Gaps = 50/642 (7%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  + +I+ Y+    +  +   FN +   + + + ++L    + GE  K++ V+  M
Sbjct: 112 RDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM 171

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             + +     T+  +++ CS L D   G +IH  VV++G D+      AL++ Y K    
Sbjct: 172 GREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRF 231

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            E+      R F+ +  +    W+++I+  VQN     + + FK M+   A        +
Sbjct: 232 VES-----LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYAS 286

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +LRS   L  L LG  +H  A+ SDF  D  V TA L MY+K  +++DA++LFD   + +
Sbjct: 287 VLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLN 346

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
           R  +N MI+ Y Q     ++L L   ++ SG   D  +      + + +K +  G Q++ 
Sbjct: 347 RQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYG 406

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +++     V V N+ IDMY +C+ L  A ++FD ++ +  VSW+++I  +  + +  E
Sbjct: 407 LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYE 466

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            L LF  M    +E D  T  +IL AC   G+L +   +H   +K G+ S SSV  ++  
Sbjct: 467 TLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLID 525

Query: 479 SYAKCGCIEMA--------------GELFDEEKIDSKDI----ITWNSMISAYAKHGDWS 520
            Y+KCG IE A              G + + EK+ +K +    ++WNS+IS Y       
Sbjct: 526 MYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 585

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVN---AGLVEE--GRIIFKEMKESYGYEPSQE 575
               L+T+M +  + PD  T+  +L  C N   AGL ++   ++I KE++    Y  S  
Sbjct: 586 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDV-YICS-- 642

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI-- 633
              ++V++  + G + ++R L+ +   + D   W  ++     H + E A    E++I  
Sbjct: 643 ---TLVDMYSKCGDLHDSR-LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILE 698

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL----RDRGL 671
           +++P    N+V   +I  A      + K   +     RD GL
Sbjct: 699 NIKP----NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGL 736



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 139/557 (24%), Positives = 260/557 (46%), Gaps = 29/557 (5%)

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           SY  +   S      N + S ++  +  + K  +K G  E     +  M +    P    
Sbjct: 26  SYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPT--- 82

Query: 134 YPFVIRSCSCLL-------DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
             FV+   +CLL       DF+S   +  ++      S++     ++  Y K +  F+  
Sbjct: 83  -TFVL---NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNK----MINGYSKSNDMFKAN 134

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
                   +D+ S WNS++S  +QNG+S KS E+F  M  EG EFD  T   +L+    L
Sbjct: 135 SFFNMMPVRDVVS-WNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFL 193

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           +   LG  +H + V      D+   +ALL MY+K     ++  +F  + +K+ V W+ +I
Sbjct: 194 EDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAII 253

Query: 307 SAYYQSGFPKESLELL--MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +   Q+     +L+    M  V +G    ++ ++  + S + +  +  G Q+HA+ L++ 
Sbjct: 254 AGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASV--LRSCAALSELRLGGQLHAHALKSD 311

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                 V  + +DMY +C+++  A+ +FD+ +     S+++MI GY   +   +AL LF 
Sbjct: 312 FAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFH 371

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            +   G+  D +++  +  AC  +  L     ++G ++K  L+    V  A    Y KC 
Sbjct: 372 RLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQ 431

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  +FDE +   +D ++WN++I+A+ ++G   +   L+  M +S + PD  TF  +
Sbjct: 432 ALAEAFRVFDEMR--RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSI 489

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC   G +  G  I   + +S G   +     S++++  + G ++EA ++     F  
Sbjct: 490 LKACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKI--HSRFFQ 545

Query: 605 DARVWGPLLSACKMHSE 621
            A V G +    KMH++
Sbjct: 546 RANVSGTMEELEKMHNK 562


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 326/619 (52%), Gaps = 73/619 (11%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA+++K G  +   +   L+  Y   +  F +   ++Q         ++SLI    +   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNC-FNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             +S  +F  M   G   DS  L NL +   EL + ++G+ +HCV+ VS    D  V  +
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVV-------------------------------- 301
           +  MY +   + DA+ +FD+MSDKD V                                 
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 302 ---WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN ++S + +SG+ KE++ +   +   GF  D  T  + + S+   + +  G+ +H 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 359 NVLRNGSDYQVSVHNSLIDMY-----------------------CECEDLNCAR------ 389
            V++ G      V +++IDMY                       C       +R      
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336

Query: 390 --KIFDSVKTKT----VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
             ++F+  K +T    VVSW+S+I G   + + +EAL LF EM++ GV+ + VTI ++LP
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC NI AL H +  HG+++++ L     V +A+   YAKCG I ++  +F+   + +K++
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFN--MMPTKNL 454

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           + WNS+++ ++ HG   +   ++  + ++ ++PD I+F  LL+AC   GL +EG   FK 
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M E YG +P  EHY+ MVNLLGRAG + EA +L+K+MPF+PD+ VWG LL++C++ +  +
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           LAE+ AEKL  +EPEN G YVLLSNIYAA G W  V  +R  +   GLKK PGCSWI++ 
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 684 KLVHEFWAADQSHPQADAI 702
             V+   A D+SHPQ D I
Sbjct: 635 NRVYTLLAGDKSHPQIDQI 653



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/533 (21%), Positives = 225/533 (42%), Gaps = 72/533 (13%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q HAR I+  G   +  +S+ LI SY+N    + +  V  SI  P    + +++  L+K 
Sbjct: 36  QAHAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
             + +++ V+ +M    + P     P + + C+ L  F  G++IH      G D    V 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKS------------------------------ 199
            ++   Y++C    +  K   +   KD+ +                              
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 200 ----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN ++S   ++G  +++  +F+ +   G   D  T+ ++L S  + + L +GR++
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--------------------MS 295
           H   +     KD  V +A++ MY K   +     LF++                    + 
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 296 DK---------------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
           DK               + V W  +I+   Q+G   E+LEL   M  +G + +  T  + 
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + +   +  +  G+  H   +R      V V ++LIDMY +C  +N ++ +F+ + TK +
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHG 459
           V W+S++ G+  H ++ E + +F  +    ++ DF++  ++L AC  +G   E  KY   
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            S + G+       + +     + G ++ A +L  E   +  D   W +++++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEP-DSCVWGALLNS 566



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 123/240 (51%), Gaps = 3/240 (1%)

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q HA +L++G+     +   LI  Y      N A  +  S+   T+ S+SS+I       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              +++ +FS M   G+  D   + N+   C  + A +  K +H  S   GL+  + V  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           ++F  Y +CG +  A ++FD  ++  KD++T ++++ AYA+ G   +  ++ ++M+ S +
Sbjct: 156 SMFHMYMRCGRMGDARKVFD--RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
             +++++ G+L+    +G  +E  ++F+++    G+ P Q   +S++  +G +  ++  R
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHH-LGFCPDQVTVSSVLPSVGDSEMLNMGR 272



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 39/226 (17%)

Query: 37  SLLNLCENPQ---HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C N     H +  H   + +H L  N+ + S LID YA  G ++LSQ VFN + +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPT 451

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + + +++   S  G+ ++ + +++ +    + P                DFIS   +
Sbjct: 452 KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP----------------DFISFTSL 495

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNG 212
            +   ++G                  D G++  K M +    K     ++ +++L  + G
Sbjct: 496 LSACGQVGLT----------------DEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLIN--LLRSTVELKSLELGRIVH 256
           K +++++L K M  E      G L+N   L++ V+L  +   ++ H
Sbjct: 540 KLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/565 (35%), Positives = 312/565 (55%), Gaps = 12/565 (2%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLIS 206
           G+++HA ++  G+     + + LV  Y KC   D   +    M QR        W ++IS
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNL----VSWTAMIS 79

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              QN K  ++   F  MR+ G         + +R+   L S+E+G+ +HC+A+      
Sbjct: 80  GLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGS 139

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L V + L  MYSK  ++ DA  +F++M  KD V W  MI  Y + G  +E+L     M+
Sbjct: 140 ELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMI 199

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
                 D     + + +   +K  ++G+ +H++V++ G +  + V N+L DMY +  D+ 
Sbjct: 200 DEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDME 259

Query: 387 CARKIF--DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            A  +F  DS + + VVS++ +I GYV  +Q  + L +F E++ +G+E +  T  +++ A
Sbjct: 260 SASNVFGIDS-ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKA 318

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N  ALE    LH   MK+  +    V++ +   Y KCG +E A + FDE  I     I
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDE--IGDPTEI 376

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WNS++S + +HG      K + +M    V+P+ ITF+ LLT C +AGLVEEG   F  M
Sbjct: 377 AWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSM 436

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            ++YG  P +EHY+ +++LLGRAG + EA+E +  MPF+P+A  W   L AC++H + E+
Sbjct: 437 DKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEM 496

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            +L AEKL+ +EP+N+G  VLLSNIYA   +W  V  +R  +RD  +KK PG SW+++G 
Sbjct: 497 GKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 556

Query: 685 LVHEFWAADQSHPQADAIYTILGIL 709
             H F A D SH +  AIY  L  L
Sbjct: 557 KTHVFGAEDWSHXRKSAIYEKLDXL 581



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/472 (25%), Positives = 221/472 (46%), Gaps = 5/472 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA  +I  G      L+++L++ Y+  G L  + ++F+++   N + +  ++  LS+
Sbjct: 25  KQLHA-LLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             ++ + +  +  M +    P +  +   IR+C+ L     G+++H   +K G  S   V
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFV 143

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G  L + Y KC   F+  K   +   KD  S W ++I    + G+ E++   FK M  E 
Sbjct: 144 GSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D   L + L +   LK+ + GR VH   V   F  D+ V  AL  MYSK   +E A 
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESAS 262

Query: 289 MLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            +F   S+   VV +  +I  Y ++   ++ L + + + R G   + FT  + + + +  
Sbjct: 263 NVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQ 322

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +E G Q+HA V++   D    V + L+DMY +C  L  A + FD +   T ++W+S++
Sbjct: 323 AALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLV 382

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGL 466
             +  H    +A++ F  M   GV+ + +T I++L  C + G +E  + Y +      G+
Sbjct: 383 SVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGV 442

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                  + +     + G ++ A E  +    +  +   W S + A   HGD
Sbjct: 443 VPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEP-NAFGWCSFLGACRIHGD 493



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 196/391 (50%), Gaps = 9/391 (2%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+  L +++++  + K L  G+ +H + + + +     +   L++MYSK   L+ A  LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D M  ++ V W  MIS   Q+    E++     M   G     F   +A+ + +++ +IE
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GKQMH   L+ G   ++ V ++L DMY +C  +  A K+F+ +  K  VSW++MI GY 
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
              +  EAL  F +M  E V +D   + + L AC  + A +  + +H   +KLG  S   
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDS--KDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           V  A+   Y+K G +E A  +F    IDS  ++++++  +I  Y +     +   ++ ++
Sbjct: 244 VGNALTDMYSKAGDMESASNVFG---IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAG 588
           ++  + P+  TF  L+ AC N   +E+G  +  + MK ++  +P     + +V++ G+ G
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCG 358

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            ++ A +   ++   P    W  L+S    H
Sbjct: 359 LLEHAIQAFDEIG-DPTEIAWNSLVSVFGQH 388


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 212/693 (30%), Positives = 368/693 (53%), Gaps = 21/693 (3%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   Q L   ++IH+  +  + L  NLIL ++++  YA+      ++  F+++   
Sbjct: 49  LLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQR 108

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N   +  ++   +  G+ ++TL   ++M    + P   T+   + SC        G +IH
Sbjct: 109 NLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIH 168

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR--KFKDLKSRWNSLISLAVQNG 212
             VV    +    V +AL+  Y KC G   + K +  +  + +++ S W+ +      +G
Sbjct: 169 QMVVDSRLEIDPKVSNALLNMYKKC-GSLSHAKRVFAKMERTRNVIS-WSIMAGAHALHG 226

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              ++   F+ M + G +     ++ +L +      ++ GR++H    +S F  +L V  
Sbjct: 227 NVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVAN 286

Query: 273 ALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           A+++MY +  ++E+A+ +FD M +  +D V WNIM+SAY  +   K++++L     R   
Sbjct: 287 AVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQ---RMQL 343

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           RAD  T ++ +S+ S+ +++  G+ +H  ++ +  +  V V N+L+ MY +C     AR 
Sbjct: 344 RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 403

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEG------VEVDFVTIINILP 443
           +FD ++ ++++SW+++I  YV      EA  LF +M +LE       V+ D +  + IL 
Sbjct: 404 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 463

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC ++ ALE  K +   +   GL+S  +V TA+   Y KCG IE    +FD       D+
Sbjct: 464 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDG-VCSRPDV 522

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
             WN+MI+ YA+ G   +  KL+ +M+   VRPD  +F+ +L AC + GL ++G+  F  
Sbjct: 523 QLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTS 582

Query: 564 MKESY-GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
           M   Y     + +H+  + +LLGR G + EA E ++ +P KPDA  W  LL+AC+ H + 
Sbjct: 583 MTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDL 642

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           + A+  A KL+ +EP  A  YV LSNIYA   KW+ VAK+R F+ ++G+KK  G S IEI
Sbjct: 643 KRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 702

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           GK +H+F   D +HP+   I   L  L  ++ E
Sbjct: 703 GKYMHDFATGDDAHPRNREIREELAKLHSQMKE 735



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 253/501 (50%), Gaps = 18/501 (3%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGF 183
           Q++     TY  +++ C+       G KIH+  VK      + + G+ +V  Y  CD   
Sbjct: 37  QAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPG 96

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           + +      + ++L S W  L++    +G+S+++    + MR +G   D+ T I  L S 
Sbjct: 97  DAKAAFDALEQRNLYS-WTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSC 155

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-W 302
            + +SL  G  +H + V S    D  V+ ALL+MY K  SL  AK +F KM     V+ W
Sbjct: 156 GDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW 215

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           +IM  A+   G   E+L     M+  G +A     +  +S+ S+   ++ G+ +H+ +  
Sbjct: 216 SIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIAL 275

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEAL 420
           +G + ++ V N+++ MY  C  +  ARK+FD++    + VVSW+ M+  YV +D+  +A+
Sbjct: 276 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAI 335

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           +L+  M+L     D VT +++L AC +   +   + LH   +   L     V  A+   Y
Sbjct: 336 QLYQRMQLRA---DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 392

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-------KQSD 533
           AKCG    A  +FD  K++ + II+W ++ISAY +    ++   L+ QM           
Sbjct: 393 AKCGSHTEARAVFD--KMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQR 450

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           V+PD + F+ +L AC +   +E+G+++  E   S G    +    ++VNL G+ G ++E 
Sbjct: 451 VKPDALAFVTILNACADVSALEQGKMV-SEQAASCGLSSDKAVGTAVVNLYGKCGEIEEG 509

Query: 594 RELVKDMPFKPDARVWGPLLS 614
           R +   +  +PD ++W  +++
Sbjct: 510 RRIFDGVCSRPDVQLWNAMIA 530


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 207/686 (30%), Positives = 366/686 (53%), Gaps = 13/686 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSS-NLIDSYANLGLLSLSQQVFNSITSPNS 96
           LL  C +   + Q+H++ +    +H + I++  N++  YA    +  + ++F        
Sbjct: 145 LLETCCSKLSISQLHSQCLKAGLVHDSFIVTKLNVL--YARYASIHHAHKLFQETPHRTV 202

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE---DTYPFVI--RSCSCLLDFISGE 151
            L+  +L++    GE+ +TL +++QM   S    E   D Y   I  +SC+ L   + G+
Sbjct: 203 YLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGK 262

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
            IH  + K+  D    VG AL++ Y KC    +  K  ++    D+   W S+IS   Q+
Sbjct: 263 VIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDV-VLWTSIISGYEQS 321

Query: 212 GKSEKSFELFKLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           G  E +   F  M + E    D  TL+++  +  +L + +LGR VH           L +
Sbjct: 322 GSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCL 381

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +LL +Y K  S+++A  LF +MSDKD + W+ M++ Y  +G   + L+L   M+    
Sbjct: 382 ANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRI 441

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           + +  T ++ + + + + N+E G ++H   +  G + + +V  +L+DMY +C     A  
Sbjct: 442 KPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVD 501

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F+ +  K V++W+ +  GY  +    E++ +F  M   G   D + ++ IL     +G 
Sbjct: 502 LFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGI 561

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+    LH + +K G  +   +  ++   YAKC  IE A ++F  + +  KD++TW+S+I
Sbjct: 562 LQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVF--KGMTYKDVVTWSSII 619

Query: 511 SAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           +AY  HG   +  KL+ QM   SD +P+ +TF+ +L+AC ++GL++EG  +F  M   Y 
Sbjct: 620 AAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYK 679

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
            +P+ EHYA MV+LLGR G +D A +++ +MP +    +WG LL AC++H   ++ E+ A
Sbjct: 680 LKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAA 739

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           + L S++P +AG Y+LLSNIY+    W+   K+R  ++++ L K  G S +E+   V  F
Sbjct: 740 KNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSF 799

Query: 690 WAADQSHPQADAIYTILGILELEIME 715
            A D+ H ++D IY IL  L  ++ E
Sbjct: 800 IAGDRIHDESDHIYEILTKLHAKMRE 825


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 218/677 (32%), Positives = 357/677 (52%), Gaps = 24/677 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVF-------NSITSPNSLLYGTILKNLSKFGEY 112
           GL ++ ++++ LI  YA  GLL  + +VF         + S NS++ G +     + G  
Sbjct: 194 GLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCV-----QNGRT 248

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            + L +++ M          T   V++ C+ L     G ++HA ++K G +  +   +AL
Sbjct: 249 LEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSE-LNIQCNAL 307

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           +  Y K        +   Q   KD  S WNS++S  VQN    ++ + F  M   G + D
Sbjct: 308 LVMYAKYGRVDSALRVFGQIAEKDYIS-WNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPD 366

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
              +++L  +   L  L  GR  H  A+      DL V   L+ MY K  S+E +  +F+
Sbjct: 367 HACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFE 426

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
            M  +D + W  +++ + QS    E+LE+++ + + G   D     + + +   +K+I  
Sbjct: 427 SMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISL 486

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
            KQ+H   +RNG    + + N LID+Y EC + + +  +F  V+ K +VSW+SMI     
Sbjct: 487 LKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTN 545

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           + +   A+ LF+EM+   ++ D V +++IL A   + +L   K +HG+ ++        V
Sbjct: 546 NGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV 605

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +++   Y+ CG +  A  +F  E+   KD++ W +MI+A   HG   Q   L+ +M Q+
Sbjct: 606 VSSLVDMYSGCGSMNYAIRVF--ERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQT 663

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            + PD ++FL LL AC ++ LVEEG+     M   Y  +P QEHYA +V++LGR+G  +E
Sbjct: 664 GLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEE 723

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A E +K MP  P + VW  LL AC++H    LA + A KL+ +EP+N GNY+L+SN++A 
Sbjct: 724 AYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAE 783

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
            GKWN   + RT + +RGL+K P CSWIEIG  +H F + D  H  ++AI+  L     E
Sbjct: 784 MGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLS----E 839

Query: 713 IMEG-RRESS--EELKF 726
           I E  RRE    E+ +F
Sbjct: 840 ITEMLRREGGYVEDTRF 856



 Score =  235 bits (599), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 153/586 (26%), Positives = 306/586 (52%), Gaps = 18/586 (3%)

Query: 49  QQIHARYIILHGLHQN--LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           +Q+HA  +    L+++    L++ L+  Y   G +  ++++FN + +     +  ++   
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 107 SKFGEYEKTLLVYKQM---ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
              G   + + VY  M   A     P   T   V+++C    D   G ++H   VK+G D
Sbjct: 137 LSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLD 196

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGM---IQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
               V +AL+  Y KC G  ++   +   +Q+  +D+ S WNS++S  VQNG++ ++  L
Sbjct: 197 KSTLVANALIGMYAKC-GLLDSALRVFEWLQQDARDVAS-WNSVVSGCVQNGRTLEALAL 254

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F+ M+  G   +S T + +L+   EL  L LGR +H   +      ++  N ALL MY+K
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCN-ALLVMYAK 313

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              ++ A  +F ++++KD + WN M+S Y Q+ F  E+++    M++ GF+ D    ++ 
Sbjct: 314 YGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSL 373

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
            S++  +  +  G++ HA  ++      + V N+L+DMY +C  + C+ K+F+S+  +  
Sbjct: 374 SSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH 433

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           +SW++++  +    +  EAL +  E++ EG+ VD + I +IL  C  + ++  +K +H Y
Sbjct: 434 ISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCY 493

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           +++ GL  L   N  I I Y +CG  + +  LF  ++++ KDI++W SMI+    +G  +
Sbjct: 494 AIRNGLLDLILENRLIDI-YGECGEFDHSLNLF--QRVEKKDIVSWTSMINCCTNNGRLN 550

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYAS 579
               L+T+M++++++PD +  + +L A      + +G+ +   + + ++  E      +S
Sbjct: 551 GAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV--VSS 608

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +V++    G M+ A  + +    K D  +W  +++A  MH   + A
Sbjct: 609 LVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHGHGKQA 653



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 226/458 (49%), Gaps = 24/458 (5%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           LK L K G+  + L   +Q+  ++  PA + Y +V+   +       G ++HA  V  G 
Sbjct: 33  LKRLCKEGDLRQAL---RQLTTRAP-PAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGS 88

Query: 163 DSFDDVG---DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSE 215
            + DD G     LV  Y +C G  ++ +    R F  + +R    WN+L+   + +G + 
Sbjct: 89  LNEDDDGFLATKLVFMYGRC-GRVDDAR----RLFNGMPARTVFSWNALVGAYLSSGSAG 143

Query: 216 KSFELFKLMRME---GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           ++  ++  MR     G+  D  TL ++L++         G  VH +AV     K   V  
Sbjct: 144 EAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVAN 203

Query: 273 ALLSMYSKLASLEDAKMLFD--KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           AL+ MY+K   L+ A  +F+  +   +D   WN ++S   Q+G   E+L L   M  +GF
Sbjct: 204 ALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGF 263

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             + +T++A +   + +  +  G+++HA +L+ GS+  +   N+L+ MY +   ++ A +
Sbjct: 264 PMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKYGRVDSALR 322

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F  +  K  +SW+SM+  YV +    EA+  F EM   G + D   ++++  A  ++  
Sbjct: 323 VFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSR 382

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L + +  H Y++K  L++   V   +   Y KCG IE + ++F  E +  +D I+W +++
Sbjct: 383 LNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVF--ESMGIRDHISWTTIL 440

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           + +A+    S+  ++  ++++  +  D +    +L  C
Sbjct: 441 ACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETC 478



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 158/315 (50%), Gaps = 11/315 (3%)

Query: 252 GRIVHCVAVVSDFCK---DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           GR VH  AV +       D  + T L+ MY +   ++DA+ LF+ M  +    WN ++ A
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 309 YYQSGFPKESLELLMCMVRS---GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           Y  SG   E++ +   M  S   G   D  T  + + +     +   G ++H   ++ G 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEALRLF 423
           D    V N+LI MY +C  L+ A ++F+ ++   + V SW+S++ G V + ++LEAL LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M+  G  ++  T + +L  C  +G L   + LH   +K G + L+    A+ + YAK 
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCG-SELNIQCNALLVMYAKY 314

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G ++ A  +F +  I  KD I+WNSM+S Y ++  +++    + +M Q   +PD    + 
Sbjct: 315 GRVDSALRVFGQ--IAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVS 372

Query: 544 LLTACVNAGLVEEGR 558
           L +A  +   +  GR
Sbjct: 373 LSSALGHLSRLNNGR 387



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 139/268 (51%), Gaps = 9/268 (3%)

Query: 353 GKQMHANVLRNGS---DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           G+Q+HA+ +  GS   D    +   L+ MY  C  ++ AR++F+ +  +TV SW++++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 410 YVTHDQSLEALRLFSEMKLE---GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           Y++   + EA+R++  M+     G   D  T+ ++L AC   G       +HG ++K+GL
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +  + V  A+   YAKCG ++ A  +F+  + D++D+ +WNS++S   ++G   +   L+
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M+ +    +  T + +L  C   GL+  GR +   + +  G E + +  A +V +  +
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKC-GSELNIQCNALLV-MYAK 313

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLS 614
            G +D A  +   +  K D   W  +LS
Sbjct: 314 YGRVDSALRVFGQIAEK-DYISWNSMLS 340



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 149/307 (48%), Gaps = 3/307 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++ HA Y I   LH +L + + L+D Y   G +  S +VF S+   + + + TIL   ++
Sbjct: 387 REFHA-YAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQ 445

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
              + + L +  ++  + +         ++ +C  L      +++H   ++ G      +
Sbjct: 446 SSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDL-IL 504

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            + L++ Y +C G F++   + QR  K     W S+I+    NG+   +  LF  M+   
Sbjct: 505 ENRLIDIYGEC-GEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKAN 563

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + DS  L+++L +   L SL  G+ VH   +  +F  +  V ++L+ MYS   S+  A 
Sbjct: 564 IQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAI 623

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F++   KD V+W  MI+A    G  K++++L   M+++G   D  + +A + + S  K
Sbjct: 624 RVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSK 683

Query: 349 NIEWGKQ 355
            +E GK 
Sbjct: 684 LVEEGKH 690


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/642 (33%), Positives = 351/642 (54%), Gaps = 15/642 (2%)

Query: 51  IHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +HA   R+ +L G   ++ ++S+L+  YA  G +  + ++F+ +   + + +  ++    
Sbjct: 129 VHAYSVRFGLLEG-DGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCV 187

Query: 108 KFGEYEKTLLVYKQMALQS----MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
             G+  + L    +M   +      P   T    + +C  L +   G  +H   VK G  
Sbjct: 188 CNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVG 247

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  +L   Y KCD   +      +   KDL S W SLI    + G +EK+ ELF  
Sbjct: 248 HCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVS-WTSLIGAYCRAGHAEKAVELFLG 306

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G + D   +  LL        +  G+  H   V  +F   + +  AL+SMY+K   
Sbjct: 307 MEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQ 366

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAA 340
           ++ A  +F  +  +D   W+ M+ AY ++G   + LEL   M    +  F  D  + I+ 
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +SS S +  +  G+  H   +++ +    SV N+LI MY  C + + ARKIF  VKTK V
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+WS++I  Y     S +AL L+ +M  EGV+ +  T+++++ +C N+ ALEH + +H +
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
              +GL    S+ TA+   Y KCG + +A ++FD   +  +D++TWN MIS Y  HG+  
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFD--SMLERDVVTWNVMISGYGMHGEAI 604

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           Q  KL++ M++ +V+P+ +TFL +L+AC +AGLV++GR +F  M+E Y  EP+ +HYA M
Sbjct: 605 QALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACM 663

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLG++GH+ EA ++V  MP +PD  +WG LL ACKMH   E+    A+K  + +PEN 
Sbjct: 664 VDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEND 723

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           G Y+L+SN Y +A KWN + K+R  +++ G++K+ G S I+I
Sbjct: 724 GYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 302/622 (48%), Gaps = 28/622 (4%)

Query: 28  PHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           P + A H F           L  +HA   +  GL      ++ L+ +Y++ GL +L+   
Sbjct: 5   PPLAALHRFLASPSPPPLPSLLTLHA-LAVTSGLSPRPDFAAKLVSAYSSAGLPALAALA 63

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F +   P++ L+ ++L++  +  ++  TL  +++M      P+  T P V  + + L   
Sbjct: 64  FAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGAL 123

Query: 148 ISGEKIHAQVVKLGF---DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
             G  +HA  V+ G    D    V  +LV  Y +C G   +      R F ++  R    
Sbjct: 124 PVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARC-GSVRDA----VRLFDEMPERDVVA 178

Query: 201 WNSLISLAVQNGKSEKSFE-LFKLMRME---GAEFDSGTLINLLRSTVELKSLELGRIVH 256
           W ++IS  V NG+  +    L +++R     GA  +S T+ + L +   L  L +G  +H
Sbjct: 179 WTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLH 238

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              V +      SV ++L SMY+K  S EDA++LF ++ +KD V W  +I AY ++G  +
Sbjct: 239 GFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAE 298

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           +++EL + M  SG + D       ++ +     +  GK  HA ++R      V + N+LI
Sbjct: 299 KAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALI 358

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL---EGVEV 433
            MY +C+ ++ A  +F  +  +   SWSSM+  Y      L+ L L+ EM+    +  E 
Sbjct: 359 SMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEY 418

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D  ++I+I+ +C  +G L   +  H YS+K      SSV  A+   Y +CG  ++A ++F
Sbjct: 419 DTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIF 478

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
               + +KD++TW+++IS+Y+  G       LY QM    V+P+  T + ++++C N   
Sbjct: 479 G--MVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAA 536

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +E G +I   +K+  G E       ++V++  + G +  AR++   M  + D   W  ++
Sbjct: 537 LEHGELIHSHVKD-VGLECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMI 594

Query: 614 SACKMHSETELAELTAEKLISM 635
           S   MH E     + A KL SM
Sbjct: 595 SGYGMHGEA----IQALKLFSM 612


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 220/720 (30%), Positives = 366/720 (50%), Gaps = 79/720 (10%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+I  + +++ YA  G LS ++++F+ +   +   + T++    +   +   L  +  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 124 LQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD-----DVGDALVEFYI 177
                 P   T+  V++SC  L       ++  Q++ L F  FD     DV  ALV+ ++
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGAL----GCRELAPQLLGL-FWKFDFWGDPDVETALVDMFV 184

Query: 178 KCD------------------------GGFENEKGMIQ--RKFKDLKSR----WNSLISL 207
           +C                          G+    G+      F+D+  R    WN +I+ 
Sbjct: 185 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 244

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             Q+G+  ++  L   M  +G   DS T  + L +   L SL  G+ +H   + S    D
Sbjct: 245 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID 304

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
             V +AL+ +Y+K  S ++AK +F+ + D++ V W ++I    Q     +S+EL   M  
Sbjct: 305 PYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 364

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D F     +S      ++  G+Q+H+  L++G +  + V NSLI +Y +C DL  
Sbjct: 365 ELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN 424

Query: 388 A-------------------------------RKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           A                               R+ FD + T+  ++W++M+  Y+ H   
Sbjct: 425 AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAE 484

Query: 417 LEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            + L+++S M   + V  D+VT + +   C +IGA +    + G+++K GL    SV  A
Sbjct: 485 EDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANA 544

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
               Y+KCG I  A +LFD   ++ KD+++WN+MI+ Y++HG   Q  K +  M     +
Sbjct: 545 AITMYSKCGRISEAQKLFD--LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK 602

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD I+++ +L+ C ++GLV+EG++ F  M   +G  P  EH++ MV+LLGRAGH+ EA++
Sbjct: 603 PDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKD 662

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           L+  MP KP A VWG LLSACK+H   ELAEL A+ +  ++  ++G+Y+LL+ IY+ AGK
Sbjct: 663 LIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGK 722

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            +  A++R  +RD+G+KK PG SW+E+   VH F A D SHPQ  AI   L     E+ME
Sbjct: 723 SDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLD----ELME 778



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 185/400 (46%), Gaps = 38/400 (9%)

Query: 49  QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +Q+HA+  ++  L Q +  ++S LI+ YA  G    +++VFNS+   NS+ +  ++    
Sbjct: 290 KQLHAK--VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 347

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           ++  + K++ ++ QM  + M   +     +I  C   +D   G ++H+  +K G +    
Sbjct: 348 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIV 407

Query: 168 VGDALVEFYIKCDGGFEN---------EKGMIQ-----------------RKFKD-LKSR 200
           V ++L+  Y KC G  +N         E+ ++                  R+F D + +R
Sbjct: 408 VSNSLISLYAKC-GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR 466

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
               WN+++   +Q+G  E   +++  M   +    D  T + L R   ++ + +LG  +
Sbjct: 467 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 526

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
               V +    ++SV  A ++MYSK   + +A+ LFD ++ KD V WN MI+ Y Q G  
Sbjct: 527 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 586

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNS 374
           K++ +    M+  G + D  + +A +S  S    ++ GK     + R +G    +   + 
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSC 646

Query: 375 LIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTH 413
           ++D+      L  A+ + D +  K T   W +++     H
Sbjct: 647 MVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIH 686



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 124/325 (38%), Gaps = 67/325 (20%)

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK--------- 390
           A+ S  +   +   + +H  ++  G    V + N+L+  Y  C  L+ AR+         
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 391 -----------------------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
                                  +FD +  + V SW++++ GY    + L+ L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 428 LEGVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
             G  + +  T   ++ +C  +G  E    L G   K        V TA+   + +CG +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 487 EMAGELFDE-----------------------------EKIDSKDIITWNSMISAYAKHG 517
           + A  LF +                             E +  +D+++WN MI+A ++ G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
              +   L  +M +  VR D  T+   LTAC     +  G+ +  ++  S    P  + Y
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQIDPY 306

Query: 578 --ASMVNLLGRAGHMDEARELVKDM 600
             ++++ L  + G   EA+ +   +
Sbjct: 307 VASALIELYAKCGSFKEAKRVFNSL 331



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 6/277 (2%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S SL++L      LQ  +A ++      ++++  +++I +Y+ +G +  +++ F+ + + 
Sbjct: 409 SNSLISLYAKCGDLQ--NAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR 466

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           N++ +  +L    + G  E  L +Y  M  Q  + P   TY  + R C+ +     G++I
Sbjct: 467 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 526

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
               VK G      V +A +  Y KC    E +K       KD+ S WN++I+   Q+G 
Sbjct: 527 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHGM 585

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI-VHCVAVVSDFCKDLSVNT 272
            +++ + F  M  +GA+ D  + + +L        ++ G++    +  V      L   +
Sbjct: 586 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISA 308
            ++ +  +   L +AK L DKM  K    VW  ++SA
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 5/161 (3%)

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            + + L +C + GAL   + LHG  + +GL S   +   +  +Y  CG +  A  L   +
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            I   ++IT N M++ YAK G  S   +L+ +M     R D+ ++  L++    A    +
Sbjct: 66  -IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP----RRDVASWNTLMSGYFQARRFLD 120

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
           G   F  M  S    P+   +  ++   G  G  + A +L+
Sbjct: 121 GLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL 161


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/683 (30%), Positives = 366/683 (53%), Gaps = 62/683 (9%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           LL  C + + L  IHA  +I   +  + +  + L+  Y+  G +S + ++F+    PNS 
Sbjct: 9   LLKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSF 68

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L+  ++   ++  +YE     + +M  +++ P   T   V+++ S L     G+ ++   
Sbjct: 69  LWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLA 128

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGK 213
           V+ G++    V + ++E +++C      E G  ++ F +++ R    WNS+I+    NG+
Sbjct: 129 VRCGYEFDLVVKNVMIELFMRC-----GEMGSARQMFDEMEERDAVSWNSMITGYGNNGR 183

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            + + +LF   RME             R+ +                           T+
Sbjct: 184 VDIARKLFD--RMEE------------RNVISW-------------------------TS 204

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG--FPKESLELLMCMVRSGFR 331
           ++  Y K   L +A++LF++M +KD   W +M+SAY   G      +L  LM +   G  
Sbjct: 205 MIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTW 264

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
             + +       +   K  E+  +M     RN + + +     +ID Y +  D++ AR +
Sbjct: 265 NLMISGCCKAGEMDAAK--EFFDRMQE---RNVASWVM-----IIDGYIKVGDVDAARSV 314

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +  K +V+WS+MI GY        +L+L+   K +G++ D    + I+ AC  +G  
Sbjct: 315 FDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVP 374

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           +  + +    +   L     V T++   YAKCG IE A ++F  E +D KD+  ++++I+
Sbjct: 375 DTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVF--EMVDQKDLHCYSTVIT 432

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           A+A HG       L+++M++++++PD + FLG+LTAC + GLV EGR +F++M + YG +
Sbjct: 433 AFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQ 492

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           PS++HYA MV++LGRAG ++EA  L+  MP  P+A VWG LLSAC++H   +LAE  A +
Sbjct: 493 PSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAATE 552

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  +EP N+GNYVLL NIYA AG+W+  +K+R  +R+  ++K  G SWIE+G ++HEF  
Sbjct: 553 LFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEFVM 612

Query: 692 ADQSHPQADAIYTILGILELEIM 714
            D+SH  ++ I+ +L +L  ++M
Sbjct: 613 GDKSHFDSERIFFMLELLCKDMM 635


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 295/510 (57%), Gaps = 8/510 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LIS     G++  +  LF  MR  G + D  TL  ++ +  +   L +G++ H VAV
Sbjct: 108 YNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL-IGQL-HSVAV 165

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESL 319
            S F   +SVN ALL+ Y K   L+DAK +F  M   +D V WN MI AY Q     ++L
Sbjct: 166 SSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKAL 225

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   MVR G   D+FT  + +++ + ++++  G Q H  +++ G      V + LID+Y
Sbjct: 226 GLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLY 285

Query: 380 CECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVT 437
            +C   ++  RK+F+ +    +V W++M+ GY  +++ LE AL  F +M+  G   +  +
Sbjct: 286 SKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCS 345

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEE 496
            + ++ AC N+ +    K +H  ++K  + S   SV+ A+   Y+KCG ++ A  LFD  
Sbjct: 346 FVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFD-- 403

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           ++   + ++ NSMI+ YA+HG   +   L+  M +  + P  ITF+ +L+AC + G VEE
Sbjct: 404 RMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEE 463

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G   F  MKE +  EP  EHY+ M++LLGRAG + EA  L+  MPF P +  W  LL AC
Sbjct: 464 GWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           + H   ELA   A +++ +EP NA  YV+LSN+YA+AG+W  VA +R F+RDRG+KK PG
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPG 583

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           CSWIE+ K +H F A D SHP    IY  L
Sbjct: 584 CSWIEVKKRIHVFVAEDSSHPMIKEIYEFL 613



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 245/512 (47%), Gaps = 18/512 (3%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+   + +I +YA      ++ Q+F+ I  P+ + Y T++   +  GE    L ++  M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              +     T   VI +C   +  I   ++H+  V  GFDS+  V +AL+ +Y K +G  
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGK-NGDL 189

Query: 184 ENEKGMI--QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           ++ K +       +D  S WNS+I    Q+ +  K+  LF+ M   G   D  TL ++L 
Sbjct: 190 DDAKRVFYGMGGIRDEVS-WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL-ASLEDAKMLFDKMSDKDRV 300
           +   L+ L  G   H   + + F ++  V + L+ +YSK    + D + +F+++++ D V
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 301 VWNIMISAYYQS-GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           +WN M+S Y Q+  F +++LE    M   G+R +  + +  +S+ S + +   GKQ+H+ 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 360 VLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            L++     ++SV N+LI MY +C +L  AR++FD +     VS +SMI GY  H   +E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYLHGYSMKLGLNSLSSVNTAIF 477
           +L LF  M    +    +T I++L AC + G +E    Y +    K  +   +   + + 
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ---SDV 534
               + G +  A  L      +    I W S++ A   HG+     K   Q+ Q   S+ 
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGS-IGWASLLGACRTHGNIELAVKAANQVLQLEPSNA 547

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            P ++    L     +AG  EE   + K M++
Sbjct: 548 APYVV----LSNMYASAGRWEEVATVRKFMRD 575



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 170/335 (50%), Gaps = 13/335 (3%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            A+++ Y+K +    A  LFD++ + D V +N +ISAY   G    +L L   M   G  
Sbjct: 78  NAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD 137

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  A ++  +   ++    Q+H+  + +G D  VSV+N+L+  Y +  DL+ A+++
Sbjct: 138 MDGFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRV 195

Query: 392 FDSV-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           F  +   +  VSW+SMI  Y  H +  +AL LF EM   G+ VD  T+ ++L A   +  
Sbjct: 196 FYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLED 255

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-GCIEMAGELFDEEKIDSKDIITWNSM 509
           L      HG  +K G +  S V + +   Y+KC G +    ++F+E  I   D++ WN+M
Sbjct: 256 LSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE--ITEPDLVLWNTM 313

Query: 510 ISAYAKH----GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           +S Y+++     D  +CF+   QM+    RP+  +F+ +++AC N     +G+ I     
Sbjct: 314 VSGYSQNEEFLEDALECFR---QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           +S           +++ +  + G++ +AR L   M
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYG 100
           C++   + Q+H+   +  G    + +++ L+  Y   G L  +++VF  +    + + + 
Sbjct: 151 CDDVGLIGQLHS-VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           +++    +  E  K L ++++M  + +     T   V+ + +CL D   G + H Q++K 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS-EKSFE 219
           GF     VG  L++ Y KC GG  + + + +   +     WN+++S   QN +  E + E
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMY 278
            F+ M+  G   +  + + ++ +   L S   G+ +H +A+ SD   + +SV+ AL++MY
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMY 389

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           SK  +L+DA+ LFD+M++ + V  N MI+ Y Q G   ESL L   M+         T I
Sbjct: 390 SKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFI 449

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVK 396
           + +S+ +    +E G   + N+++   + +     ++ +ID+      L+ A  +   + 
Sbjct: 450 SVLSACAHTGRVEEGWN-YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 397 -TKTVVSWSSMIKGYVTH 413
                + W+S++    TH
Sbjct: 509 FNPGSIGWASLLGACRTH 526



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 140/283 (49%), Gaps = 20/283 (7%)

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S    + W ++   ++    SD  V   N++I  Y +      A ++FD +    +VS++
Sbjct: 54  SKCGRLAWARKAFQDI----SDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYN 109

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I  Y    ++  AL LFS M+  G+++D  T+  ++ AC +   L  +  LH  ++  
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL--IGQLHSVAVSS 167

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G +S  SVN A+   Y K G ++ A  +F       +D ++WNSMI AY +H + S+   
Sbjct: 168 GFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG-GIRDEVSWNSMIVAYGQHQEGSKALG 226

Query: 525 LYTQMKQSDVRPDLITFLGLLTA--C---VNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           L+ +M +  +  D+ T   +LTA  C   ++ GL   G++I        G+  +    + 
Sbjct: 227 LFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI------KTGFHQNSHVGSG 280

Query: 580 MVNLLGR-AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +++L  +  G M + R++ +++  +PD  +W  ++S    + E
Sbjct: 281 LIDLYSKCGGGMSDCRKVFEEIT-EPDLVLWNTMVSGYSQNEE 322



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 34/216 (15%)

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE---- 495
           ++L  C+    L   K LH   +K  +   +  +    + Y+KCG +  A + F +    
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 496 -------------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
                                    ++I   D++++N++ISAYA  G+ +    L++ M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 531 QSDVRPDLITFLGLLTACV-NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +  +  D  T   ++TAC  + GL+ +       +  S G++       +++   G+ G 
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIGQ----LHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +D+A+ +   M    D   W  ++ A   H E   A
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKA 224


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 216/707 (30%), Positives = 361/707 (51%), Gaps = 75/707 (10%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+I  + +++ YA  G LS ++++F+ +   +   + T++    +   +   L  +  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 124 LQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD-----DVGDALVEFYI 177
                 P   T+  V++SC  L       ++  Q++ L F  FD     DV  ALV+ ++
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGAL----GCRELAPQLLGL-FWKFDFWGDPDVETALVDMFV 184

Query: 178 KCD------------------------GGFENEKGMIQ--RKFKDLKSR----WNSLISL 207
           +C                          G+    G+      F+D+  R    WN +I+ 
Sbjct: 185 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 244

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             Q+G+  ++  L   M  +G   DS T  + L +   L SL  G+ +H   + S    D
Sbjct: 245 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID 304

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
             V +AL+ +Y+K  S ++AK +F+ + D++ V W ++I    Q     +S+EL   M  
Sbjct: 305 PYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 364

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                D F     +S      ++  G+Q+H+  L++G +  + V NSLI +Y +C DL  
Sbjct: 365 ELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN 424

Query: 388 A-------------------------------RKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           A                               R+ FD + T+  ++W++M+  Y+ H   
Sbjct: 425 AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAE 484

Query: 417 LEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            + L+++S M   + V  D+VT + +   C +IGA +    + G+++K GL    SV  A
Sbjct: 485 EDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANA 544

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
               Y+KCG I  A +LFD   ++ KD+++WN+MI+ Y++HG   Q  K +  M     +
Sbjct: 545 AITMYSKCGRISEAQKLFD--LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK 602

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD I+++ +L+ C ++GLV+EG++ F  M   +G  P  EH++ MV+LLGRAGH+ EA++
Sbjct: 603 PDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKD 662

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           L+  MP KP A VWG LLSACK+H   ELAEL A+ +  ++  ++G+Y+LL+ IY+ AGK
Sbjct: 663 LIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGK 722

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            +  A++R  +RD+G+KK PG SW+E+   VH F A D SHPQ  AI
Sbjct: 723 SDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAI 769



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 185/400 (46%), Gaps = 38/400 (9%)

Query: 49  QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +Q+HA+  ++  L Q +  ++S LI+ YA  G    +++VFNS+   NS+ +  ++    
Sbjct: 290 KQLHAK--VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 347

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           ++  + K++ ++ QM  + M   +     +I  C   +D   G ++H+  +K G +    
Sbjct: 348 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIV 407

Query: 168 VGDALVEFYIKCDGGFEN---------EKGMIQ-----------------RKFKD-LKSR 200
           V ++L+  Y KC G  +N         E+ ++                  R+F D + +R
Sbjct: 408 VSNSLISLYAKC-GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR 466

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
               WN+++   +Q+G  E   +++  M   +    D  T + L R   ++ + +LG  +
Sbjct: 467 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 526

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
               V +    ++SV  A ++MYSK   + +A+ LFD ++ KD V WN MI+ Y Q G  
Sbjct: 527 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 586

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNS 374
           K++ +    M+  G + D  + +A +S  S    ++ GK     + R +G    +   + 
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSC 646

Query: 375 LIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTH 413
           ++D+      L  A+ + D +  K T   W +++     H
Sbjct: 647 MVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIH 686



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 124/325 (38%), Gaps = 67/325 (20%)

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK--------- 390
           A+ S  +   +   + +H  ++  G    V + N+L+  Y  C  L+ AR+         
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 391 -----------------------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
                                  +FD +  + V SW++++ GY    + L+ L  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 428 LEGVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
             G  + +  T   ++ +C  +G  E    L G   K        V TA+   + +CG +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 487 EMAGELFDE-----------------------------EKIDSKDIITWNSMISAYAKHG 517
           + A  LF +                             E +  +D+++WN MI+A ++ G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
              +   L  +M +  VR D  T+   LTAC     +  G+ +  ++  S    P  + Y
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQIDPY 306

Query: 578 --ASMVNLLGRAGHMDEARELVKDM 600
             ++++ L  + G   EA+ +   +
Sbjct: 307 VASALIELYAKCGSFKEAKRVFNSL 331



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 6/277 (2%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S SL++L      LQ  +A ++      ++++  +++I +Y+ +G +  +++ F+ + + 
Sbjct: 409 SNSLISLYAKCGDLQ--NAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR 466

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           N++ +  +L    + G  E  L +Y  M  Q  + P   TY  + R C+ +     G++I
Sbjct: 467 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 526

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
               VK G      V +A +  Y KC    E +K       KD+ S WN++I+   Q+G 
Sbjct: 527 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS-WNAMITGYSQHGM 585

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI-VHCVAVVSDFCKDLSVNT 272
            +++ + F  M  +GA+ D  + + +L        ++ G++    +  V      L   +
Sbjct: 586 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISA 308
            ++ +  +   L +AK L DKM  K    VW  ++SA
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSA 682



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 5/161 (3%)

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            + + L +C + GAL   + LHG  + +GL S   +   +  +Y  CG +  A  L   +
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            I   ++IT N M++ YAK G  S   +L+ +M     R D+ ++  L++    A    +
Sbjct: 66  -IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP----RRDVASWNTLMSGYFQARRFLD 120

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
           G   F  M  S    P+   +  ++   G  G  + A +L+
Sbjct: 121 GLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLL 161


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/602 (34%), Positives = 324/602 (53%), Gaps = 45/602 (7%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           ++IH+Q++K G  +       L+EF   C      +       FK +++     WN +I 
Sbjct: 45  KQIHSQIIKTGLHNTHFALSKLIEF---CAVSPHGDLSYALSLFKTIRNPNHVIWNHMIR 101

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               +     + E +  M   G E +  T  ++ +S  +++    G+ VH   +      
Sbjct: 102 GLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEH 161

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDK--MSD---------------------------- 296
           +  V+T+L++MY++   L +A+++FDK  M D                            
Sbjct: 162 NAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIP 221

Query: 297 -KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS-TMKNIEWGK 354
            +D V WN MIS Y QSG  +E++     M R+    ++ T ++ +S+ + +  +++ G 
Sbjct: 222 VRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGN 281

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
            + + +   G    + + N LIDMY +C DL  A  +F+ ++ K VVSW+ MI GY    
Sbjct: 282 WVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMS 341

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY---SMKLGLNSLSS 471
              EAL LF  M    ++ + VT ++ILPAC N+GAL+  K++H Y   +MK   N+++ 
Sbjct: 342 CYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVA- 400

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           + T++   YAKCG + +A  +FD   +++K + TWN+MIS +A HG       L+++M  
Sbjct: 401 LWTSLIDMYAKCGDLAVAKRIFD--CMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTS 458

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
               PD ITF+G+LTAC +AGL+  GR  F  M + Y   P   HY  M++L GRAG  D
Sbjct: 459 EGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFD 518

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EA  LVK+M  KPD  +W  LL AC++H   ELAE  A+ L  +EPEN   YVLLSNIYA
Sbjct: 519 EAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYA 578

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
            AG+W  VAK+RT L D  +KK PGCS IE+  +VHEF   D+ HPQ++ IY +L  +++
Sbjct: 579 GAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDM 638

Query: 712 EI 713
            +
Sbjct: 639 RL 640



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 159/598 (26%), Positives = 276/598 (46%), Gaps = 75/598 (12%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSIT 92
           S +LL+ C+  Q L+QIH++ II  GLH      S LI+  + +  G LS +  +F +I 
Sbjct: 31  SLTLLSNCKTLQTLKQIHSQ-IIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR 89

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           +PN +++  +++ LS        L  Y  M      P E T+P + +SC+ +     G++
Sbjct: 90  NPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQ 149

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK------------------- 193
           +HA V+KLG +    V  +L+  Y + +G   N + +  +                    
Sbjct: 150 VHAHVLKLGLEHNAFVHTSLINMYAQ-NGELVNARLVFDKSSMRDAVSFTALITGYASKG 208

Query: 194 --------FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
                   F ++  R    WN++IS   Q+G+ E++   F+ MR      +  T++++L 
Sbjct: 209 FLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLS 268

Query: 242 STVEL-KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           +  +   SL+LG  V           ++ +   L+ MY K   LE+A  LF+K+ DK+ V
Sbjct: 269 ACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVV 328

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN+MI  Y      KE+L L   M++S    +  T ++ + + + +  ++ GK +HA V
Sbjct: 329 SWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388

Query: 361 LRNGSDYQ--VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            +N    +  V++  SLIDMY +C DL  A++IFD + TK++ +W++MI G+  H  +  
Sbjct: 389 DKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDT 448

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LFS M  EG   D +T + +L AC + G L            LG    SS       
Sbjct: 449 ALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLS-----------LGRRYFSS------- 490

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
                        +  + K+  K +  +  MI  + + G + +     T +K  +++PD 
Sbjct: 491 -------------MIQDYKVSPK-LPHYGCMIDLFGRAGLFDEA---ETLVKNMEMKPDG 533

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
             +  LL AC     +E    + K + E     PS   Y  + N+   AG  ++  ++
Sbjct: 534 AIWCSLLGACRIHRRIELAESVAKHLFELEPENPSA--YVLLSNIYAGAGRWEDVAKI 589



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 131/291 (45%), Gaps = 37/291 (12%)

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE---DLNCARKIFDSVKTKTV 400
           +S  K ++  KQ+H+ +++ G        + LI+ +C      DL+ A  +F +++    
Sbjct: 35  LSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIE-FCAVSPHGDLSYALSLFKTIRNPNH 93

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V W+ MI+G  + +    AL  +  M   G E +  T  +I  +C  I      K +H +
Sbjct: 94  VIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAH 153

Query: 461 SMKLGLNSLSSVN-------------------------------TAIFISYAKCGCIEMA 489
            +KLGL   + V+                               TA+   YA  G ++ A
Sbjct: 154 VLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEA 213

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            ELFDE  I  +D+++WN+MIS YA+ G   +    + +M+++ V P++ T L +L+AC 
Sbjct: 214 RELFDE--IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACA 271

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            +G   +     +   E  G   +      ++++  + G ++EA  L + +
Sbjct: 272 QSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKI 322


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/594 (33%), Positives = 321/594 (54%), Gaps = 44/594 (7%)

Query: 151 EKIHAQVVKLG--FDSFDD---VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
           ++IHAQ+++ G  FD F     +  A +  +   D     ++   Q    +L + WN+LI
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYA---QQVFDQIPHPNLYT-WNTLI 107

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
                +    +S  +F  M  +  +F D  T   L+++  EL+ L  G+  H + +    
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ +  +L+  Y+K   L     +F  +  +D V WN MI+A+ Q G P+E+LEL   
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M     + +  T +  +S+ +   + E+G+ +H+ + RN     +++ N+++DMY +C  
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGS 287

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVT--------------HDQSL------------- 417
           +  A+++FD +  K +VSW++M+ GY                 +Q +             
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347

Query: 418 ----EALRLFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
               EAL LF E++L +  + D VT+++ L AC  +GA++   ++H Y  K G+     +
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHL 407

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            T++   Y KCG ++ A  +F    ++ KD+  W++MI+  A HG       L+++M++ 
Sbjct: 408 TTSLIDMYCKCGDLQKALMVF--HSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQED 465

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            V+P+ +TF  +L AC + GLVEEGR  F +M+  YG  P  +HYA MV++LGRAG ++E
Sbjct: 466 KVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEE 525

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A EL++ MP  P A VWG LL AC +H    LAE    +LI +EP N G YVLLSNIYA 
Sbjct: 526 AVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAK 585

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           AGKW+ V+ +R  +RD GLKK PGCS IE+  +VHEF   D SHP A  IY  L
Sbjct: 586 AGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKL 639



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/525 (30%), Positives = 265/525 (50%), Gaps = 53/525 (10%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL--SQQVFNSIT 92
           + SL++ C   + L+QIHA+ ++  GL  +   +S LI + A     SL  +QQVF+ I 
Sbjct: 38  TLSLIDQCSETKQLKQIHAQ-MLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCLLDFISGE 151
            PN   + T+++  +      ++LL++ +M  QS  +P + T+PF+I++ S L +  +G+
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 152 KIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLI 205
             H  V+K  LG D F  + ++L+ FY KC      E G+  R F ++  R    WNS+I
Sbjct: 157 AFHGMVIKVLLGSDVF--ILNSLIHFYAKC-----GELGLGYRVFVNIPRRDVVSWNSMI 209

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +  VQ G  E++ ELF+ M  +  + +  T++ +L +  +    E GR VH     +   
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG 269

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV------------------------- 300
           + L+++ A+L MY+K  S+EDAK LFDKM +KD V                         
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM 329

Query: 301 ------VWNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
                  WN +ISAY Q G PKE+LEL     +    + D  T ++ +S+ + +  ++ G
Sbjct: 330 PNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG 389

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
             +H  + + G      +  SLIDMYC+C DL  A  +F SV+ K V  WS+MI G   H
Sbjct: 390 GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMH 449

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               +A+ LFS+M+ + V+ + VT  NIL AC ++G +E  +      M+L    L  V 
Sbjct: 450 GHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFN-QMELVYGVLPGVK 508

Query: 474 --TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
               +     + G +E A EL ++  +     + W +++ A   H
Sbjct: 509 HYACMVDILGRAGLLEEAVELIEKMPMAPAASV-WGALLGACTIH 552


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/662 (30%), Positives = 364/662 (54%), Gaps = 23/662 (3%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +I+  G   +L   + L++ Y     L  + ++F+ +   N++ + T+ +  S+  ++ +
Sbjct: 60  HILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQ 119

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE------KIHAQVVKLGFDSFDDV 168
            L       L+      +  PFV  +   LL  +S +       +HA V KLG  +   V
Sbjct: 120 AL----HFILRIFKEGHEVNPFVFTTLLKLL--VSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G AL++ Y            + +  F D+  +    W  +++   +N   E+S +LF  M
Sbjct: 174 GTALIDAY-----SVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQM 228

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           R+ G + ++ T+   L+S + L++  +G+ VH  A+   +  DL V  ALL +Y+K   +
Sbjct: 229 RIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEI 288

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
            DA+ LF++M   D + W++MI+ Y QS   KE+L+L + M ++    + FT  + + + 
Sbjct: 289 IDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQAC 348

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           ++  +++ GKQ+H+ VL+ G +  V V N+++D+Y +C ++  + K+F+ +  +  V+W+
Sbjct: 349 ASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWN 408

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I GYV       A+ LF+ M    ++   VT  ++L A  ++ ALE    +H  ++K 
Sbjct: 409 TIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKT 468

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
             N  + V  ++   YAKCG I  A   FD  K++ +D ++WN+MI  Y+ HG   +   
Sbjct: 469 MYNKDTVVANSLIDMYAKCGRINDARLTFD--KMNKRDEVSWNAMICGYSMHGMSMEALN 526

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+  M+ +D +P+ +TF+G+L+AC NAGL+ +G+  F+ M + Y  +P  EHY  MV LL
Sbjct: 527 LFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLL 586

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GR G  DEA +L+ ++ ++P   VW  LL AC +H + +L  + A+ ++ MEP +   +V
Sbjct: 587 GRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHV 646

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSN+YA AG+W+ VA +R +++ + ++K PG SW+E   +VH F   D SHP    I  
Sbjct: 647 LLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICA 706

Query: 705 IL 706
           +L
Sbjct: 707 ML 708



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 179/362 (49%), Gaps = 4/362 (1%)

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G+ +HC  +      DL     LL+ Y +  SL+DA  LFD+M   + + +  +   Y +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
                ++L  ++ + + G   + F     +  + +M        +HA V + G      V
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +LID Y    +++ AR +FD +  K +VSW+ M+  Y  +    E+L+LF++M++ G 
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + +  TI   L +C+ + A    K +HG ++K   +    V  A+   YAK G I  A  
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           LF+E  +   D+I W+ MI+ YA+     +   L+ +M+Q+ V P+  TF  +L AC ++
Sbjct: 294 LFEE--MPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASS 351

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             ++ G+ I   + + +G   +     +++++  + G ++ + +L +++P + D   W  
Sbjct: 352 VSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDV-TWNT 409

Query: 612 LL 613
           ++
Sbjct: 410 II 411


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 218/636 (34%), Positives = 332/636 (52%), Gaps = 67/636 (10%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-- 190
           T P V+++C  L  +  G   H  +   GF+S   + +ALV  Y +C G  E E  MI  
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC-GSLE-EASMIFD 69

Query: 191 ---QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM------EGAEFDSGTLINLLR 241
              QR   D+ S WNS++S  V++  +  + +LF  M +           D  +++N+L 
Sbjct: 70  EITQRGIDDVIS-WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +   LK++   + VH  A+ +    D+ V  AL+  Y+K   +E+A  +F+ M  KD V 
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 302 WNIMISAYYQSGFPKESLELLM-------------------------C----------MV 326
           WN M++ Y QSG  K + EL                           C          M+
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN----------GSDYQVSVHNSLI 376
            SG   +  T I+ +S+ +++     G ++HA  L+N          G D  + V+N+LI
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 308

Query: 377 DMYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE--GVE 432
           DMY +C     AR IFD +  + + VV+W+ MI G+  +  S +AL+LF EM  E  GV 
Sbjct: 309 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 368

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--VNTAIFISYAKCGCIEMAG 490
            +  TI  IL AC ++ A+   K +H Y ++      S+  V   +   Y+KCG ++ A 
Sbjct: 369 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +FD   +  K  I+W SM++ Y  HG  S+   ++ +M+++   PD ITFL +L AC +
Sbjct: 429 HVFDS--MSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSH 486

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
            G+V++G   F  M   YG  P  EHYA  ++LL R G +D+A + VKDMP +P A VW 
Sbjct: 487 CGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWV 546

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLSAC++HS  ELAE    KL+ M  EN G+Y L+SNIYA AG+W  VA++R  ++  G
Sbjct: 547 ALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSG 606

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +KK PGCSW++  K    F+  D+SHP +  IY +L
Sbjct: 607 IKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALL 642



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 218/455 (47%), Gaps = 58/455 (12%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G   D  TL ++L++  EL S   G   H +   + F  ++ +  AL++MYS+  S
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 284 LEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMV------RSGFRADL 334
           LE+A M+FD+++ +   D + WN ++SA+ +S     +L+L   M        +  R+D+
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            + +  + +  ++K +   K++H N +RNG+   V V N+LID Y +C  +  A K+F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF------------------- 435
           ++ K VVSW++M+ GY        A  LF  M+ E + +D                    
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 436 ----------------VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS-------- 471
                           VTII++L AC ++GA      +H YS+K  L +L +        
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 472 --VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   Y+KC   + A  +FD+  ++ ++++TW  MI  +A++GD +   KL+ +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 530 --KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVNLLGR 586
             +   V P+  T   +L AC +   +  G+ I   +   + Y+ S    A+ ++N+  +
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            G +D AR +   M  K  A  W  +++   MH  
Sbjct: 421 CGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHGR 454



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 246/528 (46%), Gaps = 71/528 (13%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEY 112
           I  +G   N+ + + L+  Y+  G L  +  +F+ IT     + + + +I+    K    
Sbjct: 36  ICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNA 95

Query: 113 EKTLLVYKQMAL----QSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLG--FDS 164
              L ++ +M L    +      D    V  + +C  L      +++H   ++ G   D 
Sbjct: 96  WTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDV 155

Query: 165 FDDVGDALVEFYIKCDGGFENE-KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
           F  VG+AL++ Y KC G  EN  K     +FKD+ S WN++++   Q+G  + +FELFK 
Sbjct: 156 F--VGNALIDAYAKC-GLMENAVKVFNMMEFKDVVS-WNAMVAGYSQSGNFKAAFELFKN 211

Query: 224 MRMEGAEFD-----------------------------SG------TLINLLRSTVELKS 248
           MR E    D                             SG      T+I++L +   L +
Sbjct: 212 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGA 271

Query: 249 LELGRIVH------CVAVV-SDFC---KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
              G  +H      C+  + +DF    +DL V  AL+ MYSK  S + A+ +FD +  ++
Sbjct: 272 FSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEE 331

Query: 299 R--VVWNIMISAYYQSGFPKESLELLMCMVRS--GFRADLFTAIAAVSSISTMKNIEWGK 354
           R  V W +MI  + Q G   ++L+L + M+    G   + +T    + + + +  I  GK
Sbjct: 332 RNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGK 391

Query: 355 QMHANVLRNGSDYQVS---VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           Q+HA VLR+   Y  S   V N LI+MY +C D++ AR +FDS+  K+ +SW+SM+ GY 
Sbjct: 392 QIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 450

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLS 470
            H +  EAL +F +M+  G   D +T + +L AC + G ++  + Y    S   GL   +
Sbjct: 451 MHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRA 510

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                     A+ G ++ A +   +  ++   ++ W +++SA   H +
Sbjct: 511 EHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVV-WVALLSACRVHSN 557


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 215/693 (31%), Positives = 362/693 (52%), Gaps = 42/693 (6%)

Query: 48  LQQIHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
           ++ IH    R  +LHG      +++ L+ +YA  G L+ +  +FN++ S +++ + +++ 
Sbjct: 78  VRSIHGAALRRDLLHGF--TPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIA 135

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFD 163
            L  F  +   L   + M L+    +  T   V+ +CS L  D   G + HA  +K GF 
Sbjct: 136 ALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFL 195

Query: 164 SFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKS------RWNSLISLAVQNGKSE 215
             D+    +AL+  Y +   G  ++  M+        S       WN+++SL VQ+G+  
Sbjct: 196 DGDERFAFNALLSMYARL--GLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCG 253

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAVVSDFCKDLSVNTAL 274
           ++ E+   M   G   D  T  + L +  +L+ L LGR +H  V   SD   +  V +AL
Sbjct: 254 EAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASAL 313

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           + MY+    +  A+ +FD +    R +  WN M+  Y Q+G  +E+LEL   M       
Sbjct: 314 VDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVV 373

Query: 333 DLFTAIAAVSSISTMKNIEWGKQ-MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
              T IA V           GK+ +H  VL+ G      V N+L+D+Y    D+  AR I
Sbjct: 374 PSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWI 433

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF---------------- 435
           F +++ + VVSW+++I G V      +A +L  EM+ +G   D                 
Sbjct: 434 FAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVP 493

Query: 436 --VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
             VT++ +LP C  + A    K +HGY+M+  L+S  +V +A+   YAKCGC+ ++  +F
Sbjct: 494 NNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVF 553

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAG 552
           D  ++  +++ITWN +I AY  HG   +   L+ +M  S + +P+ +TF+  L AC ++G
Sbjct: 554 D--RLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSG 611

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGP 611
           +V+ G  +F  MK ++G +P+ + +A  V++LGRAG +DEA  ++  M P +     W  
Sbjct: 612 MVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSS 671

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
            L AC++H    L E+ AE+L  +EP+ A +YVLL NIY+AAG W   +++R  +R RG+
Sbjct: 672 FLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGV 731

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
            K PGCSWIE+  ++H F A + +HP++  ++ 
Sbjct: 732 SKEPGCSWIELDGVIHRFMAGESAHPESTLVHA 764



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 45  PQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
           P   ++IH  Y + H L  ++ + S L+D YA  G L+LS+ VF+ +   N + +  ++ 
Sbjct: 511 PAKGKEIHG-YAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIM 569

Query: 105 NLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCS 142
                G  ++ + ++ +M + +   P E T+   + +CS
Sbjct: 570 AYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACS 608


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 295/510 (57%), Gaps = 8/510 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LIS     G++  +  LF  MR  G + D  TL  ++ +  +   L +G++ H VAV
Sbjct: 108 YNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGL-IGQL-HSVAV 165

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESL 319
            S F   +SVN ALL+ Y K   L+DAK +F  M   +D V WN MI AY Q     ++L
Sbjct: 166 SSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKAL 225

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   MVR G   D+FT  + +++ + ++++  G Q H  +++ G      V + LID+Y
Sbjct: 226 GLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLY 285

Query: 380 CECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVT 437
            +C   ++  RK+F+ +    +V W++M+ GY  +++ LE AL  F +M+  G   +  +
Sbjct: 286 SKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCS 345

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEE 496
            + ++ AC N+ +    K +H  ++K  + S   SV+ A+   Y+KCG ++ A  LFD  
Sbjct: 346 FVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFD-- 403

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           ++   + ++ NSMI+ YA+HG   +   L+  M +  + P  ITF+ +L+AC + G VEE
Sbjct: 404 RMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEE 463

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G   F  MKE +  EP  EHY+ M++LLGRAG + EA  L+  MPF P +  W  LL AC
Sbjct: 464 GWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGAC 523

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           + H   ELA   A +++ +EP NA  YV+LSN+YA+AG+W  VA +R F+RDRG+KK PG
Sbjct: 524 RTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPG 583

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           CSWIE+ K +H F A D SHP    IY  L
Sbjct: 584 CSWIEVKKRIHVFVAEDSSHPMIKEIYEFL 613



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 245/512 (47%), Gaps = 18/512 (3%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+   + +I +YA      ++ Q+F+ I  P+ + Y T++   +  GE    L ++  M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              +     T   VI +C   +  I   ++H+  V  GFDS+  V +AL+ +Y K +G  
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGK-NGDL 189

Query: 184 ENEKGMI--QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           ++ K +       +D  S WNS+I    Q+ +  K+  LF+ M   G   D  TL ++L 
Sbjct: 190 DDAKRVFYGMGGIRDEVS-WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL-ASLEDAKMLFDKMSDKDRV 300
           +   L+ L  G   H   + + F ++  V + L+ +YSK    + D + +F+++++ D V
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 301 VWNIMISAYYQS-GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           +WN M+S Y Q+  F +++LE    M   G+R +  + +  +S+ S + +   GKQ+H+ 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 360 VLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            L++     ++SV N+LI MY +C +L  AR++FD +     VS +SMI GY  H   +E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYLHGYSMKLGLNSLSSVNTAIF 477
           +L LF  M    +    +T I++L AC + G +E    Y +    K  +   +   + + 
Sbjct: 429 SLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMI 488

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ---SDV 534
               + G +  A  L      +    I W S++ A   HG+     K   Q+ Q   S+ 
Sbjct: 489 DLLGRAGKLSEAENLIARMPFNPGS-IGWASLLGACRTHGNIELAVKAANQVLQLEPSNA 547

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            P ++    L     +AG  EE   + K M++
Sbjct: 548 APYVV----LSNMYASAGRWEEVATVRKFMRD 575



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 170/335 (50%), Gaps = 13/335 (3%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            A+++ Y+K +    A  LFD++ + D V +N +ISAY   G    +L L   M   G  
Sbjct: 78  NAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD 137

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  A ++  +   ++    Q+H+  + +G D  VSV+N+L+  Y +  DL+ A+++
Sbjct: 138 MDXFTLSAVIT--ACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRV 195

Query: 392 FDSV-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           F  +   +  VSW+SMI  Y  H +  +AL LF EM   G+ VD  T+ ++L A   +  
Sbjct: 196 FYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLED 255

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-GCIEMAGELFDEEKIDSKDIITWNSM 509
           L      HG  +K G +  S V + +   Y+KC G +    ++F+E  I   D++ WN+M
Sbjct: 256 LSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEE--ITEPDLVLWNTM 313

Query: 510 ISAYAKH----GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           +S Y+++     D  +CF+   QM+    RP+  +F+ +++AC N     +G+ I     
Sbjct: 314 VSGYSQNEEFLEDALECFR---QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           +S           +++ +  + G++ +AR L   M
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYG 100
           C++   + Q+H+   +  G    + +++ L+  Y   G L  +++VF  +    + + + 
Sbjct: 151 CDDVGLIGQLHS-VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           +++    +  E  K L ++++M  + +     T   V+ + +CL D   G + H Q++K 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS-EKSFE 219
           GF     VG  L++ Y KC GG  + + + +   +     WN+++S   QN +  E + E
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMY 278
            F+ M+  G   +  + + ++ +   L S   G+ +H +A+ SD   + +SV+ AL++MY
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMY 389

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           SK  +L+DA+ LFD+M++ + V  N MI+ Y Q G   ESL L   M+         T I
Sbjct: 390 SKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFI 449

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVK 396
           + +S+ +    +E G   + N+++   + +     ++ +ID+      L+ A  +   + 
Sbjct: 450 SVLSACAHTGRVEEGWN-YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 397 -TKTVVSWSSMIKGYVTH 413
                + W+S++    TH
Sbjct: 509 FNPGSIGWASLLGACRTH 526



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 140/283 (49%), Gaps = 20/283 (7%)

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S    + W ++   ++    SD  V   N++I  Y +      A ++FD +    +VS++
Sbjct: 54  SKCGRLAWARKAFQDI----SDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYN 109

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I  Y    ++  AL LFS M+  G+++D  T+  ++ AC +   L  +  LH  ++  
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGL--IGQLHSVAVSS 167

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G +S  SVN A+   Y K G ++ A  +F       +D ++WNSMI AY +H + S+   
Sbjct: 168 GFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG-GIRDEVSWNSMIVAYGQHQEGSKALG 226

Query: 525 LYTQMKQSDVRPDLITFLGLLTA--C---VNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           L+ +M +  +  D+ T   +LTA  C   ++ GL   G++I        G+  +    + 
Sbjct: 227 LFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI------KTGFHQNSHVGSG 280

Query: 580 MVNLLGR-AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +++L  +  G M + R++ +++  +PD  +W  ++S    + E
Sbjct: 281 LIDLYSKCGGGMSDCRKVFEEIT-EPDLVLWNTMVSGYSQNEE 322



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 34/216 (15%)

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE---- 495
           ++L  C+    L   K LH   +K  +   +  +    + Y+KCG +  A + F +    
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 496 -------------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
                                    ++I   D++++N++ISAYA  G+ +    L++ M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 531 QSDVRPDLITFLGLLTACV-NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +  +  D  T   ++TAC  + GL+ +       +  S G++       +++   G+ G 
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIGQ----LHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +D+A+ +   M    D   W  ++ A   H E   A
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKA 224


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 218/672 (32%), Positives = 363/672 (54%), Gaps = 22/672 (3%)

Query: 48   LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
            L+Q+  R I   G  ++L + S L++ +A  GL+  ++ +F  +   N++    ++  L+
Sbjct: 370  LEQMLTR-IEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLA 428

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-------GEKIHAQVVKL 160
            +  + E+   V+K+M       +E     +    S   +F +       G+++HA + + 
Sbjct: 429  RQHQGEEAAKVFKEMKDLVEINSESLVVLL----STFTEFSNLKEGKRKGQEVHAYLFRS 484

Query: 161  GF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
            G  D+   +G+ALV  Y KC    +N   + Q         WNS+IS    N + E++  
Sbjct: 485  GLVDARISIGNALVNMYGKCTA-IDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVS 543

Query: 220  LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
             F  M+  G    + ++I+ L S   L  L LGR +H          D+SV+ ALL++Y+
Sbjct: 544  CFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYA 603

Query: 280  KLASLEDAKMLFDKMSDKDRVVWNIMISAY--YQSGFPKESLELLMCMVRSGFRADLFTA 337
            +  S+ + + +F +M + D+V WN  I A   Y++    ++L+  + M+++G+R +  T 
Sbjct: 604  ETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVL-QALKYFLEMMQAGWRPNRVTF 662

Query: 338  IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-K 396
            I  ++++S+   +  G Q+HA +L+       ++ N+L+  Y +CE +     IF  + +
Sbjct: 663  INILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSE 722

Query: 397  TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
             +  VSW+SMI GY+      +A+ L   M   G ++D  T   +L AC ++  LE    
Sbjct: 723  RRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGME 782

Query: 457  LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            +H  +++  L S   V +A+   YAKCG I+ A   F  E +  ++I +WNSMIS YA+H
Sbjct: 783  VHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFF--ELMPVRNIYSWNSMISGYARH 840

Query: 517  GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
            G   +  K++T+MKQ    PD +TF+G+L+AC + GLV+EG   FK M E YG  P  EH
Sbjct: 841  GHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEH 900

Query: 577  YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTAEKLIS 634
            ++ MV+LLGRAG + +  + +K MP  P+  +W  +L AC   +   TEL +  A+ LI 
Sbjct: 901  FSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIE 960

Query: 635  MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
            +EP+NA NYVLLSN++AA G W  V + R  +R   +KK  GCSW+ +   VH F A DQ
Sbjct: 961  LEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQ 1020

Query: 695  SHPQADAIYTIL 706
            +HP+ + IY  L
Sbjct: 1021 THPEKEKIYEKL 1032



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 214/426 (50%), Gaps = 6/426 (1%)

Query: 40  NLCENPQHLQQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLL 98
           NL E  +  Q++HA Y+   GL    I   N L++ Y     +  +  VF  + S +++ 
Sbjct: 466 NLKEGKRKGQEVHA-YLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVS 524

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +++  L     +E+ +  +  M    M P+  +    + SCS L     G +IH +  
Sbjct: 525 WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGF 584

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI-SLAVQNGKSEKS 217
           K G D    V +AL+  Y + D   E +K   Q    D  S WNS I +LA       ++
Sbjct: 585 KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVS-WNSFIGALAKYEASVLQA 643

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            + F  M   G   +  T IN+L +      L LG  +H + +      D ++  ALL+ 
Sbjct: 644 LKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAF 703

Query: 278 YSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           Y K   +ED +++F +MS+ +D V WN MIS Y  SG   ++++L+  M++ G + D FT
Sbjct: 704 YGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFT 763

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               +S+ +++  +E G ++HA  +R   +  V V ++L+DMY +C  ++ A + F+ + 
Sbjct: 764 FATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMP 823

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + + SW+SMI GY  H    +AL++F+ MK  G   D VT + +L AC ++G ++   Y
Sbjct: 824 VRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDE-GY 882

Query: 457 LHGYSM 462
            H  SM
Sbjct: 883 KHFKSM 888



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/575 (24%), Positives = 285/575 (49%), Gaps = 28/575 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   ++   + LI+ Y  +G L  ++++F+ +   N + +  ++   ++    ++   ++
Sbjct: 170 GFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLF 229

Query: 120 KQMALQSMYPAEDTYPFVIRSCS-CLLDFIS-GEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           K +    + P        +R+C  C    I  G +IHA + KL   S   + + L+  Y 
Sbjct: 230 KGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYS 289

Query: 178 KCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF-- 231
            C G  ++      R F ++K R    WNS+IS+  + G +  +F+LF +M+MEG E   
Sbjct: 290 DCSGSIDDA----HRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNL 345

Query: 232 --DSGTLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLASLEDA 287
             +  TL +L+ +   L    L  +   +  +  S F +DL V +AL++ +++   ++ A
Sbjct: 346 RPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCA 405

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           KM+F +M D++ V  N ++    +    +E+ ++   M +     +  + +  +S+ +  
Sbjct: 406 KMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEF 464

Query: 348 KNIEWGK----QMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
            N++ GK    ++HA + R+G  D ++S+ N+L++MY +C  ++ A  +F  + +K  VS
Sbjct: 465 SNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVS 524

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+SMI G   +++  EA+  F  MK  G+     ++I+ L +C ++G L   + +HG   
Sbjct: 525 WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGF 584

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH-GDWSQ 521
           K GL+   SV+ A+   YA+   I    ++F +  +   D ++WNS I A AK+     Q
Sbjct: 585 KWGLDLDVSVSNALLTLYAETDSINECQKVFFQ--MPEYDQVSWNSFIGALAKYEASVLQ 642

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASM 580
             K + +M Q+  RP+ +TF+ +L A  +  ++  G  I    +K S   + + E+  ++
Sbjct: 643 ALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIEN--AL 700

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +   G+   M++   +   M  + D   W  ++S 
Sbjct: 701 LAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISG 735



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 182/370 (49%), Gaps = 23/370 (6%)

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           + F  D+     L+++Y ++ +L  A+ LFD+M  K+ V W+ +IS Y Q+  P E+  L
Sbjct: 169 TGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSL 228

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTM--KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
              ++ SG   + F   +A+ +        I+ G Q+HA + +      + + N L+ MY
Sbjct: 229 FKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMY 288

Query: 380 CECE-DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF--- 435
            +C   ++ A ++FD +K +  V+W+S+I  Y     ++ A +LFS M++EGVE++    
Sbjct: 289 SDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPN 348

Query: 436 -VTIINILPACVNIG--ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
             T+ +++ A  ++    L  ++ +     K G      V +A+   +A+ G ++ A  +
Sbjct: 349 EYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMI 408

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  +++  ++ +T N ++   A+     +  K++ +MK   V  +  + + LL+      
Sbjct: 409 F--KQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFS 465

Query: 553 LVEEGRIIFKEMKESYGY-------EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
            ++EG+   ++ +E + Y       +       ++VN+ G+   +D A  + + MP K D
Sbjct: 466 NLKEGK---RKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK-D 521

Query: 606 ARVWGPLLSA 615
              W  ++S 
Sbjct: 522 TVSWNSMISG 531



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 146/307 (47%), Gaps = 14/307 (4%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
              +H  + + G    V   N+LI++Y    +L  ARK+FD +  K +VSWS +I GY  
Sbjct: 159 ANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQ 218

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA--LEHVKYLHGYSMKLGLNSLS 470
           +    EA  LF  +   G+  +   + + L AC   G+  ++    +H +  KL   S  
Sbjct: 219 NRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDM 278

Query: 471 SVNTAIFISYAKC-GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
            ++  +   Y+ C G I+ A  +FDE K   ++ +TWNS+IS Y + GD    FKL++ M
Sbjct: 279 ILSNVLMSMYSDCSGSIDDAHRVFDEIKF--RNSVTWNSIISVYCRRGDAVSAFKLFSVM 336

Query: 530 KQSDV----RPDLITFLGLLTACVNAGLVEEGRIIFKEMK---ESYGYEPSQEHYASMVN 582
           +   V    RP+  T   L+TA  +  L + G ++ ++M    E  G+       +++VN
Sbjct: 337 QMEGVELNLRPNEYTLCSLVTAACS--LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVN 394

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
              R G MD A+ + K M  +    + G ++   + H   E A++  E    +E  +   
Sbjct: 395 GFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESL 454

Query: 643 YVLLSNI 649
            VLLS  
Sbjct: 455 VVLLSTF 461


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 309/559 (55%), Gaps = 4/559 (0%)

Query: 146  DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
            D   G+++H   VK G DS   V ++LV  Y K    +   +     K  DL S WNS+I
Sbjct: 919  DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLIS-WNSMI 977

Query: 206  SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL-KSLELGRIVHCVAVVSDF 264
            S   Q+   E+S  LF  +  EG + D  TL ++LR+   L   L + R +H  A+ +  
Sbjct: 978  SSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGN 1037

Query: 265  CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
              D  V T L+ +YSK   +E+A+ LF    D D   WN M+  Y      K++LEL   
Sbjct: 1038 IADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSL 1097

Query: 325  MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
            + +SG ++D  T   A  +   +  ++ GKQ+HA+ ++ G D  + V++ ++DMY +C D
Sbjct: 1098 IHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 1157

Query: 385  LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            +  A  +F+ +     V+W+SMI G V +    +ALR++  M+   V  D  T   ++ A
Sbjct: 1158 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 1217

Query: 445  CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
               + ALE  + LH   +KL   S   V T++   YAKCG IE A  LF  +K++ ++I 
Sbjct: 1218 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLF--KKMNVRNIA 1275

Query: 505  TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
             WN+M+   A+HG+  +   L+  MK   + PD ++F+G+L+AC +AGL  E       M
Sbjct: 1276 LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSM 1335

Query: 565  KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
               YG EP  EHY+ +V+ LGRAG + EA ++++ MPFK  A +   LL AC++  + E 
Sbjct: 1336 PNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVET 1395

Query: 625  AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
             +  A +L ++EP ++  YVLLSNIYAAA +W+ V   R  ++ + +KK PG SWI++  
Sbjct: 1396 GKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 1455

Query: 685  LVHEFWAADQSHPQADAIY 703
            ++H F   D+SHPQAD IY
Sbjct: 1456 MLHLFVVDDRSHPQADIIY 1474



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 158/599 (26%), Positives = 285/599 (47%), Gaps = 49/599 (8%)

Query: 38   LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
            +L LC N   L   + +H  Y I  GL  ++ +S  L++ Y+  G +  ++ +F+ +   
Sbjct: 733  VLKLCLNSGCLWAAEGVHG-YAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER 791

Query: 95   NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG---- 150
            + +L+  +LK   + G  ++   ++ +     + P E +   ++   S  +++  G    
Sbjct: 792  DVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS-EVNWDEGKWLA 850

Query: 151  EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
            +++ A   KL     DD  D                              WN  +S  + 
Sbjct: 851  DQVQAYAAKLSLS--DDNPDVFC---------------------------WNKKLSECLW 881

Query: 211  NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
             G +  + E F  M     ++D+ TL+ +L +      LELG+ VH +AV S    D+SV
Sbjct: 882  AGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSV 941

Query: 271  NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
              +L++MYSK+     A+ +F+ M   D + WN MIS+  QS   +ES+ L + ++  G 
Sbjct: 942  ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 1001

Query: 331  RADLFTAIAAVSSISTM-KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            + D FT  + + + S++   +   +Q+H + L+ G+     V  +LID+Y +   +  A 
Sbjct: 1002 KPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAE 1061

Query: 390  KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
             +F +     +  W++M+ GY+  +   +AL LFS +   G + D +T+     AC  + 
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 450  ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
             L+  K +H +++K G +S   VN+ I   Y KCG +  AG +F+   I + D + W SM
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN--YISAPDDVAWTSM 1179

Query: 510  ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA--CVNAGLVEEGRIIFKE-MKE 566
            IS    +G+  Q  ++Y +M+QS V PD  TF  L+ A  CV A  +E+GR +    +K 
Sbjct: 1180 ISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA--LEQGRQLHANVIKL 1237

Query: 567  SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                +P      S+V++  + G++++A  L K M  +  A +W  +L     H   E A
Sbjct: 1238 DCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGNAEEA 1293



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 143/578 (24%), Positives = 262/578 (45%), Gaps = 51/578 (8%)

Query: 52   HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL----- 106
            HAR I++ G   +  LS+NL+  Y+  G LS ++QVF++    + + +  IL        
Sbjct: 644  HAR-IVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD 702

Query: 107  SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFD 163
            S  G  ++ L +++ +          T   V++ C    CL    + E +H   +K+G +
Sbjct: 703  SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLW---AAEGVHGYAIKIGLE 759

Query: 164  SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
                V  ALV  Y KC G   + + +    F  ++ R    WN ++   VQ G  +++F+
Sbjct: 760  WDVFVSGALVNIYSKC-GRMRDARLL----FDWMRERDVVLWNMMLKGYVQLGLEKEAFQ 814

Query: 220  LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
            LF      G   D  ++  +L    E+   E   +   V                   Y+
Sbjct: 815  LFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQA-----------------YA 857

Query: 280  KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
               SL D         + D   WN  +S    +G    ++E  + M       D  T + 
Sbjct: 858  AKLSLSD--------DNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLV 909

Query: 340  AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
             +++++   ++E GKQ+H   +++G D  VSV NSL++MY +      AR++F+ +K   
Sbjct: 910  VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 969

Query: 400  VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN-IGALEHVKYLH 458
            ++SW+SMI          E++ LF ++  EG++ D  T+ ++L AC + I  L   + +H
Sbjct: 970  LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIH 1029

Query: 459  GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             +++K G  + S V T +   Y+K G +E A  LF  +  D  D+  WN+M+  Y    D
Sbjct: 1030 VHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNK--DDLDLACWNAMMFGYIIGND 1087

Query: 519  WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
              +  +L++ + +S  + D IT      AC    L+++G+ I     ++ G++      +
Sbjct: 1088 GKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNS 1146

Query: 579  SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
             ++++  + G M  A  +V +    PD   W  ++S C
Sbjct: 1147 GILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 1183



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 10/196 (5%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            +QIHA + I  G   +L ++S ++D Y   G +  +  VFN I++P+ + + +++     
Sbjct: 1127 KQIHA-HAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 1185

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             G  ++ L +Y +M    + P E T+  +I++ SC+     G ++HA V+KL   S   V
Sbjct: 1186 NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFV 1245

Query: 169  GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
            G +LV+ Y KC G  E+      R FK +  R    WN+++    Q+G +E++  LFK M
Sbjct: 1246 GTSLVDMYAKC-GNIED----AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM 1300

Query: 225  RMEGAEFDSGTLINLL 240
            +  G E D  + I +L
Sbjct: 1301 KSHGIEPDRVSFIGIL 1316



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            +Q+HA  I L  +    + +S L+D YA  G +  + ++F  +   N  L+  +L  L++
Sbjct: 1228 RQLHANVIKLDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 1286

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
             G  E+ + ++K M    + P   ++  ++ +CS
Sbjct: 1287 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 212/652 (32%), Positives = 350/652 (53%), Gaps = 20/652 (3%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C + + L+    + AR I      +++ + ++++D YA  G ++ +++VF+ I++
Sbjct: 78  SVLAACASLEELRFGKVVQARVIKCGA--EDVFVCTSIVDLYAKCGHMAEAREVFSRISN 135

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           P+ + +  +L   +K  +    L ++++M    +     T   VI +C          ++
Sbjct: 136 PSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQV 195

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAV--- 209
           HA V K GF     V  AL+    K       +  + +R F+DL   R  +++++ V   
Sbjct: 196 HAWVFKSGFYLDTSVAAALISMNSK-----SGDINLSERVFEDLDDIRRQNIVNVMVTSF 250

Query: 210 -QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            QN K  K+  LF  M  EG   D  ++ +LL     L  L LG+ VH   + S    DL
Sbjct: 251 SQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTLKSGLILDL 307

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           +V ++L +MYSK  SLE++  LF ++  KD   W  MIS + + G+ +E++ L   M+  
Sbjct: 308 TVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDE 367

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   D  T  A ++  S++ ++   K++H   LR G D  + + ++L++ Y +C  L  A
Sbjct: 368 GTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLA 427

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           RK++D +     VS SS+I GY  H    +   LF +M + G  +D   I +IL A V  
Sbjct: 428 RKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLS 487

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
              E    +H Y  K+GL +  SV +++   Y+K G IE   + F +  I+  D+I W +
Sbjct: 488 EESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQ--INGPDLIAWTA 545

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +I++YA+HG  ++  ++Y  MK+   +PD +TF+G+L+AC + GLVEEG      M + Y
Sbjct: 546 LIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDY 605

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G EP   HY  MV+ LGR+G + EA   +   P KPDA VWG LL+ACK++ + EL +L 
Sbjct: 606 GIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDALVWGTLLAACKIYGDVELGKLA 665

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           A+K I +EP +AG YV LSNI A  G+W+ V + R  ++  G++K PG S +
Sbjct: 666 AKKAIELEPSDAGAYVSLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 717



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 160/645 (24%), Positives = 297/645 (46%), Gaps = 50/645 (7%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           ++ S+LID+++       + +VF    S N   + TI+    +   Y     ++ +M   
Sbjct: 8   VVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNG 67

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFE 184
              P   TY  V+ +C+ L +   G+ + A+V+K G  D F  V  ++V+ Y KC G   
Sbjct: 68  FQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAEDVF--VCTSIVDLYAKC-GHMA 124

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
             + +  R        W  ++S   ++  +  + E+F+ MR  G E +S T+ +++ +  
Sbjct: 125 EAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACG 184

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV-VWN 303
               +     VH     S F  D SV  AL+SM SK   +  ++ +F+ + D  R  + N
Sbjct: 185 RPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVN 244

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
           +M++++ Q+  P +++ L   M++ G   D F+     S +S +  +  GKQ+H+  L++
Sbjct: 245 VMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFS---VCSLLSVLDCLNLGKQVHSYTLKS 301

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G    ++V +SL  MY +C  L  +  +F  +  K    W+SMI G+  +    EA+ LF
Sbjct: 302 GLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLF 361

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           SEM  EG   D  T+  +L  C ++ +L   K +HGY+++ G++    + +A+  +Y+KC
Sbjct: 362 SEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKC 421

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +++A +++D  ++   D ++ +S+IS Y++HG     F L+  M  S    D      
Sbjct: 422 GSLKLARKVYD--RLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISS 479

Query: 544 LLTACV----------------NAGLVEEGRI--IFKEMKESYGY------------EPS 573
           +L A V                  GL  E  +      M   +G              P 
Sbjct: 480 ILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPD 539

Query: 574 QEHYASMVNLLGRAGHMDEARE---LVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
              + +++    + G  +EA +   L+K+  FKPD   +  +LSAC      E       
Sbjct: 540 LIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLN 599

Query: 631 KLI---SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
            ++    +EPEN  +YV + +    +G+   + +   F+  R +K
Sbjct: 600 SMVKDYGIEPENR-HYVCMVDALGRSGR---LREAENFINTRPIK 640


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 220/711 (30%), Positives = 379/711 (53%), Gaps = 37/711 (5%)

Query: 35  SFS-LLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           SFS +L +C   EN +   QIH   + + G   +++  S L+D YA    L  S  VF +
Sbjct: 183 SFSVILKVCSILENYKLGTQIHGIALRM-GYDTDVVSGSALLDMYAKCKRLDESFTVFYA 241

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +   N + +  I+    +    +  L ++K+M    +  ++  Y  V++SC+ L D   G
Sbjct: 242 MPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLG 301

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
            ++HA  +K  F     V  A ++ Y KC+   + ++     +  +L+S +N++I+   Q
Sbjct: 302 TQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQS-YNAMITGYSQ 360

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
                ++  LF+ +      FD  +L   LR+   +K L  G  +H +A  S+F +++ V
Sbjct: 361 KDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICV 420

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             A + MY K  +L++A  +FD+M  KD V WN +I+A+ Q+    ++L +L+ M+RSG 
Sbjct: 421 ANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGM 480

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D +T   +V       ++  G ++H  +++ G      + +SL+DMY +C  ++ A K
Sbjct: 481 EPDEYT-FGSVLKACAGDSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEK 539

Query: 391 IFDSV---------------------------KTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           I + +                             + +VSW+++I GYV   QS +A R F
Sbjct: 540 IHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFF 599

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           + M   G+  D  T   +L  C N+ ++   K +H + +K  L     + + +   Y+KC
Sbjct: 600 NRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKC 659

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +  +  +F++  I  +D +TWN+MI  YA HG   +  KL+  M   ++ P+  TF+ 
Sbjct: 660 GNLHDSRLMFEKAPI--RDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVS 717

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL AC + GLVE G   F  MK+ YG +P  EHY++MV++LG++G +++A EL+++MPF+
Sbjct: 718 LLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFE 777

Query: 604 PDARVWGPLLSACKMH-SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
            D  +W  LLSACK++ +  E AE+ A  L+ ++P+++  Y+LLSNIYA AG W+  +++
Sbjct: 778 ADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASEL 837

Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           RT +R   LKK PGCSW+EI    H F   D++HP+   IY  L ++  E+
Sbjct: 838 RTAMRSDKLKKEPGCSWVEIRDEFHTFLVGDKAHPRWKEIYNGLALIYNEM 888



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 167/682 (24%), Positives = 311/682 (45%), Gaps = 74/682 (10%)

Query: 24  NQTRPHMT-ATHSFSLLNLCENPQHL--QQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           N  +P  + A  SF      +   H   +Q HA ++I+ G    + +S+ L+  Y N G 
Sbjct: 41  NHEKPATSVANFSFVFKECAKQRAHELGKQAHA-HMIISGFRPTVFVSNCLLQLYINCGN 99

Query: 81  LSLSQQVFNS-----ITSPNSLLYGTILKN-----------------------LSKF--- 109
           L  + ++F+      + S N++++G    N                       LS F   
Sbjct: 100 LGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQT 159

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           GE  +++ V+ +M    +     ++  +++ CS L ++  G +IH   +++G+D+    G
Sbjct: 160 GENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSG 219

Query: 170 DALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            AL++ Y KC   D  F     M Q+ +      W+++I+  VQN   +   ++FK M+ 
Sbjct: 220 SALLDMYAKCKRLDESFTVFYAMPQKNWIS----WSAIIAGCVQNNFLDGGLKMFKEMQK 275

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G         ++L+S   L  L LG  +H  A+ SDF KD  V TA L MY+K  +++D
Sbjct: 276 VGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQD 335

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ LFD   + +   +N MI+ Y Q      +L L   + +S    D  +   A+ + +T
Sbjct: 336 AQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACAT 395

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +K +  G Q+H    ++     + V N+ IDMY +CE L+ A ++FD +  K  VSW+++
Sbjct: 396 VKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAI 455

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  +  +++  + L +   M   G+E D  T  ++L AC    +L H   +H   +KLG+
Sbjct: 456 IAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGM 514

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD------------------------ 502
            S   + +++   Y+KCG I+ A ++ ++  I   D                        
Sbjct: 515 ASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQE 574

Query: 503 -IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
            I++WN++IS Y          + + +M +  + PD  T+  +L  C N   +  G+ I 
Sbjct: 575 MIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIH 634

Query: 562 KE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
              +K+   Y+      +++V++  + G++ ++R + +  P + D   W  ++     H 
Sbjct: 635 AHVIKKELQYDVYI--CSTLVDMYSKCGNLHDSRLMFEKAPIR-DFVTWNAMICGYAHHG 691

Query: 621 ETELAELTAEKLISME--PENA 640
             E A    E ++ M   P +A
Sbjct: 692 MGEEAIKLFESMVLMNIMPNHA 713


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 326/619 (52%), Gaps = 73/619 (11%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA+++K G  +   +   L+  Y   +  F +   ++Q         ++SLI    +   
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNC-FNDADLVLQSIPDPTIYSFSSLIYALTKAKL 96

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
             +S  +F  M   G   DS  L NL +   EL + ++G+ +HCV+ VS    D  V  +
Sbjct: 97  FTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVV-------------------------------- 301
           +  MY +   + DA+ +FD+MSDKD V                                 
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 302 ---WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN ++S + +SG+ KE++ +   +   GF  D  T  + + S+   + +  G+ +H 
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276

Query: 359 NVLRNGSDYQVSVHNSLIDMY-----------------------CECEDLNCAR------ 389
            V++ G      V +++IDMY                       C       +R      
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336

Query: 390 --KIFDSVKTKT----VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
             ++F+  K +T    VVSW+S+I G   + + +EAL LF EM++ GV+ + VTI ++LP
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC NI AL H +  HG+++++ L     V +A+   YAKCG I ++  +F+   + +K++
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFN--MMPTKNL 454

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           + WNS+++ ++ HG   +   ++  + ++ ++PD I+F  LL+AC   GL +EG   FK 
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M E YG +P  EHY+ MVNLLGRAG + EA +L+K+MPF+PD+ VWG LL++C++ +  +
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           LAE+ AEKL  +EPEN G YVLLSNIYAA G W  V  +R  +   GLKK PGCSWI++ 
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 684 KLVHEFWAADQSHPQADAI 702
             V+   A D+SHPQ D I
Sbjct: 635 NRVYTLLAGDKSHPQIDQI 653



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/533 (21%), Positives = 225/533 (42%), Gaps = 72/533 (13%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q HAR I+  G   +  +S+ LI SY+N    + +  V  SI  P    + +++  L+K 
Sbjct: 36  QAHAR-ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKA 94

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
             + +++ V+ +M    + P     P + + C+ L  F  G++IH      G D    V 
Sbjct: 95  KLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQ 154

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKS------------------------------ 199
            ++   Y++C    +  K   +   KD+ +                              
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214

Query: 200 ----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN ++S   ++G  +++  +F+ +   G   D  T+ ++L S  + + L +GR++
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--------------------MS 295
           H   +     KD  V +A++ MY K   +     LF++                    + 
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334

Query: 296 DK---------------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
           DK               + V W  +I+   Q+G   E+LEL   M  +G + +  T  + 
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + +   +  +  G+  H   +R      V V ++LIDMY +C  +N ++ +F+ + TK +
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNL 454

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHG 459
           V W+S++ G+  H ++ E + +F  +    ++ DF++  ++L AC  +G   E  KY   
Sbjct: 455 VCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKM 514

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            S + G+       + +     + G ++ A +L  E   +  D   W +++++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEP-DSCVWGALLNS 566



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 123/240 (51%), Gaps = 3/240 (1%)

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q HA +L++G+     +   LI  Y      N A  +  S+   T+ S+SS+I       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              +++ +FS M   G+  D   + N+   C  + A +  K +H  S   GL+  + V  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           ++F  Y +CG +  A ++FD  ++  KD++T ++++ AYA+ G   +  ++ ++M+ S +
Sbjct: 156 SMFHMYMRCGRMGDARKVFD--RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI 213

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
             +++++ G+L+    +G  +E  ++F+++    G+ P Q   +S++  +G +  ++  R
Sbjct: 214 EANIVSWNGILSGFNRSGYHKEAVVMFQKIHH-LGFCPDQVTVSSVLPSVGDSEMLNMGR 272



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 39/226 (17%)

Query: 37  SLLNLCENPQ---HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C N     H +  H   + +H L  N+ + S LID YA  G ++LSQ VFN + +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPT 451

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + + +++   S  G+ ++ + +++ +    + P                DFIS   +
Sbjct: 452 KNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP----------------DFISFTSL 495

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNG 212
            +   ++G                  D G++  K M +    K     ++ +++L  + G
Sbjct: 496 LSACGQVGLT----------------DEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAG 539

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLIN--LLRSTVELKSLELGRIVH 256
           K +++++L K M  E      G L+N   L++ V+L  +   ++ H
Sbjct: 540 KLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFH 585


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 201/667 (30%), Positives = 357/667 (53%), Gaps = 15/667 (2%)

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
           + +H  L L+S L       G L  ++ +F+ +T  + + + T++       +  + L++
Sbjct: 52  YSVHNMLELNSEL-KQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALIL 110

Query: 119 YKQMALQSMYPAEDTY--PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           +  M +    P  D +     +++C+  ++   GE +H   VK G      V  AL++ Y
Sbjct: 111 FSNMWVHPG-PQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMY 169

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           +K     + E+G   R F+ + +R    W ++I+  V  G + +    F  M      +D
Sbjct: 170 MKVG---KIEQGC--RVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYD 224

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
           S T    L+++ +   L  G+ +H   +   F +   V   L +MY+K    +    LF+
Sbjct: 225 SHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFE 284

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           KM   D V W  +IS Y Q G  + ++E    M +S    + +T  A +SS + +   +W
Sbjct: 285 KMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKW 344

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+Q+H +VLR G    +SV NS+I +Y +C  L  A  +F  +  K ++SWS++I  Y  
Sbjct: 345 GEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQ 404

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
              + EA    S M+ EG + +   + ++L  C ++  LE  K +H + + +G++  + V
Sbjct: 405 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMV 464

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
           ++AI   Y+KCG ++ A ++F+  KI+  DII+W +MI+ YA+HG   +   L+ ++   
Sbjct: 465 HSAIISMYSKCGSVQEASKIFNGMKIN--DIISWTAMINGYAEHGYSQEAINLFEKISSV 522

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            ++PD + F+G+LTAC +AG+V+ G   F  M   Y   PS+EHY  +++LL RAG + E
Sbjct: 523 GLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSE 582

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A  +++ MPF  D  VW  LL AC++H + +    TAE+L+ ++P +AG ++ L+NIYAA
Sbjct: 583 AEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAA 642

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
            G+W   A +R  ++ +G+ K  G SW+ +   ++ F A DQ+HPQ++ I T+L +L   
Sbjct: 643 KGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVLKLLSAN 702

Query: 713 IMEGRRE 719
           I + ++E
Sbjct: 703 IGDAQQE 709



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 178/374 (47%), Gaps = 12/374 (3%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
            H + IH +  I  G  ++  + + L   Y   G      ++F  +  P+ + + T++  
Sbjct: 242 HHGKAIHTQ-TIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIST 300

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
             + GE E  +  +K+M    + P + T+  VI SC+ L     GE+IH  V++LG  + 
Sbjct: 301 YVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNA 360

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFKL 223
             V ++++  Y KC  G      ++      KD+ S W+++IS+  Q G ++++F+    
Sbjct: 361 LSVANSIITLYSKC--GLLKSASLVFHGITRKDIIS-WSTIISVYSQGGYAKEAFDYLSW 417

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           MR EG + +   L ++L     +  LE G+ VH   +      +  V++A++SMYSK  S
Sbjct: 418 MRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGS 477

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +++A  +F+ M   D + W  MI+ Y + G+ +E++ L   +   G + D    I  +++
Sbjct: 478 VQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTA 537

Query: 344 ISTMKNIEWG---KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT- 399
            +    ++ G     +  NV R     +   +  LID+ C    L+ A  I  S+   T 
Sbjct: 538 CNHAGMVDLGFYYFMLMTNVYRISPSKE--HYGCLIDLLCRAGRLSEAEHIIRSMPFHTD 595

Query: 400 VVSWSSMIKGYVTH 413
            V WS++++    H
Sbjct: 596 DVVWSTLLRACRVH 609


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 224/752 (29%), Positives = 373/752 (49%), Gaps = 85/752 (11%)

Query: 28  PHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           PH         L  C +   L   + +H R + + GL   + L + L+ +Y + G LS +
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTV-GLASAVFLQNTLLHAYLSCGALSDA 74

Query: 85  QQVFNS-ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR---- 139
           +++  + I  PN + +  ++   +K G       ++ +M  + +           R    
Sbjct: 75  RRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGS 134

Query: 140 --SCSCLLDFISGEKIHAQVVKLGFDSFD-----DVGDALVEFYIKCD------------ 180
             SC  L       ++  Q++ L F  FD     DV  ALV+ +++C             
Sbjct: 135 WMSCGAL----GCRELAPQLLGL-FWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQI 189

Query: 181 ------------GGFENEKGMIQ--RKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
                        G+    G+      F+D+  R    WN +I+   Q+G+  ++  L  
Sbjct: 190 ERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVV 249

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M  +G   DS T  + L +   L SL  G+ +H   + S    D  V +AL+ +Y+K  
Sbjct: 250 EMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCG 309

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           S ++AK +F+ + D++ V W ++I    Q     +S+EL   M       D F     +S
Sbjct: 310 SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLIS 369

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA-------------- 388
                 ++  G+Q+H+  L++G +  + V NSLI +Y +C DL  A              
Sbjct: 370 GCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVS 429

Query: 389 -----------------RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEG 430
                            R+ FD + T+  ++W++M+  Y+ H    + L+++S M   + 
Sbjct: 430 WTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKD 489

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V  D+VT + +   C +IGA +    + G+++K GL    SV  A    Y+KCG I  A 
Sbjct: 490 VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQ 549

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           +LFD   ++ KD+++WN+MI+ Y++HG   Q  K +  M     +PD I+++ +L+ C +
Sbjct: 550 KLFD--LLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 607

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           +GLV+EG++ F  M   +G  P  EH++ MV+LLGRAGH+ EA++L+  MP KP A VWG
Sbjct: 608 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 667

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLSACK+H   ELAEL A+ +  ++  ++G+Y+LL+ IY+ AGK +  A++R  +RD+G
Sbjct: 668 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 727

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           +KK PG SW+E+   VH F A D SHPQ  AI
Sbjct: 728 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAI 759


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/582 (32%), Positives = 332/582 (57%), Gaps = 7/582 (1%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           S++P E+    ++  C  + D     +IHA ++K        V + L+E          +
Sbjct: 20  SLFP-ENPKTLILEQCKTIRDL---NEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMD 75

Query: 186 EKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
               I R+  +  S  +N +I          ++  LFK M     + D  T   +L+   
Sbjct: 76  YAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCS 135

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L++L  G  +H + +   F     V   L+ MY+    +E A+ +FD+MS+++   WN 
Sbjct: 136 RLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNS 195

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           M + Y +SG  +E ++L   M+    R D  T ++ +++   + ++E G+ ++  V   G
Sbjct: 196 MFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKG 255

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                ++  SL+DMY +C  ++ AR++FD +  + VV+WS+MI GY    +  EAL LF 
Sbjct: 256 LKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFH 315

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EM+   ++ + +T+++IL +C  +GALE  K++H +  K  +    ++ TA+   YAKCG
Sbjct: 316 EMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCG 375

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +E + E+F   K+  K++++W  +I   A +G   +  + +  M + +V P+ +TF+G+
Sbjct: 376 SVESSIEVFG--KMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGV 433

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC +AGLV+EGR +F  M   +G EP  EHY  MV++LGRAG ++EA + +K+MP +P
Sbjct: 434 LSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQP 493

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           +A +W  LL++CK+H   E+ E + ++LI +EP ++G+Y+LLSNIYA+ G+W    K+R 
Sbjct: 494 NAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRG 553

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            ++++G+KKTPGCS IE+  ++HEF+A D  H Q++ IY  +
Sbjct: 554 EMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAI 595



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 241/488 (49%), Gaps = 14/488 (2%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV--FNSITSPN 95
           +L  C+  + L +IHA  I    L +  + + NL++S A L   S+   V  F  I  P+
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKV-AENLLESAAILLPTSMDYAVSIFRQIDEPD 88

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           S  Y  +++  +      + +L++K+M   S+ P E T+P +++ CS L     GE+IHA
Sbjct: 89  SPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHA 148

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQN 211
            ++K GF S   V + L+  Y  C      E  + +R F ++  R    WNS+ +   ++
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANC-----GEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G  E+  +LF  M      FD  TL+++L +   L  LELG  ++          + ++ 
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI 263

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T+L+ MY+K   ++ A+ LFD+M  +D V W+ MIS Y Q+   +E+L+L   M ++   
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T ++ +SS + +  +E GK +H  + +      V++  +L+D Y +C  +  + ++
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K V+SW+ +I+G  ++ Q  +AL  F  M  + VE + VT I +L AC + G +
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLV 443

Query: 452 EHVKYLH-GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +  + L    S   G+         +     + G IE A +      I    +I W +++
Sbjct: 444 DEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVI-WRTLL 502

Query: 511 SAYAKHGD 518
           ++   H +
Sbjct: 503 ASCKVHKN 510


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 184/516 (35%), Positives = 306/516 (59%), Gaps = 4/516 (0%)

Query: 200 RWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           +WN+++S   +N   E +  +F +L+ +   + D+ TL  ++++   L  L LG+I+H +
Sbjct: 174 QWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGM 233

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDA-KMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           A   D   D+ V  AL++MY K   +E+A K +FD M  K    WN ++  Y Q+  P++
Sbjct: 234 ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRK 293

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +L+L + M  SG   D FT  + + + S MK++ +G+++H   LRNG      +  SL+ 
Sbjct: 294 ALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLS 353

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           +Y  C     A+ +FD ++ +++VSW+ MI GY  +    EA+ LF +M  +G++   + 
Sbjct: 354 LYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIA 413

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           I+ +  AC  + AL   K LH +++K  L     V+++I   YAK GCI ++  +FD  +
Sbjct: 414 IMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFD--R 471

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  KD+ +WN +I+ Y  HG   +  +L+ +M +  ++PD  TF G+L AC +AGLVE+G
Sbjct: 472 LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDG 531

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
              F +M   +  EP  EHY  +V++LGRAG +D+A  L+++MP  PD+R+W  LLS+C+
Sbjct: 532 LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR 591

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H    L E  A KL+ +EPE   NYVL+SN++A +GKW+ V ++R  ++D GL+K  GC
Sbjct: 592 IHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGC 651

Query: 678 SWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           SWIE+G  VH F   D+  P+ + +      LE++I
Sbjct: 652 SWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKI 687



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 229/464 (49%), Gaps = 15/464 (3%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            + +L++ +I  Y+  G  S S+ VF+ +   N   +  I+   ++   +E  + ++ ++
Sbjct: 139 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 198

Query: 123 -ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
            ++    P   T P VI++C+ LLD   G+ IH    K+   S   VG+AL+  Y KC  
Sbjct: 199 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKC-- 256

Query: 182 GFENEKGMIQRKFK--DLK--SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           G   E   ++R F   D K  S WN+L+    QN    K+ +L+  M   G + D  T+ 
Sbjct: 257 GLVEEA--VKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIG 314

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL +   +KSL  G  +H  A+ +    D  +  +LLS+Y        A++LFD M  +
Sbjct: 315 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 374

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
             V WN+MI+ Y Q+G P E++ L   M+  G +      +    + S +  +  GK++H
Sbjct: 375 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 434

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              L+      + V +S+IDMY +   +  +++IFD ++ K V SW+ +I GY  H +  
Sbjct: 435 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 494

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV---NT 474
           EAL LF +M   G++ D  T   IL AC + G +E    L  ++  L L+++       T
Sbjct: 495 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVE--DGLEYFNQMLNLHNIEPKLEHYT 552

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +     + G I+ A  L +E   D    I W+S++S+   HG+
Sbjct: 553 CVVDMLGRAGRIDDALRLIEEMPGDPDSRI-WSSLLSSCRIHGN 595



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 129/281 (45%), Gaps = 15/281 (5%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL  C   + L   ++IH  + + +GL  +  +  +L+  Y   G    +Q +F+ +  
Sbjct: 315 SLLLACSRMKSLHYGEEIHG-FALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH 373

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  ++   S+ G  ++ + +++QM    + P E     V  +CS L     G+++
Sbjct: 374 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           H   +K        V  ++++ Y K  GG     G+ QR F  L+ +    WN +I+   
Sbjct: 434 HCFALKAHLTEDIFVSSSIIDMYAK--GGC---IGLSQRIFDRLREKDVASWNVIIAGYG 488

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDL 268
            +G+ +++ ELF+ M   G + D  T   +L +      +E G    + +  + +    L
Sbjct: 489 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 548

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKM-SDKDRVVWNIMISA 308
              T ++ M  +   ++DA  L ++M  D D  +W+ ++S+
Sbjct: 549 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 589


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 217/729 (29%), Positives = 380/729 (52%), Gaps = 31/729 (4%)

Query: 2   LGLLPPACSLQSGHVKFLR---FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIIL 58
           L L PP+ SL S    F R    P   + P  TAT    L+   +  Q  Q  ++     
Sbjct: 34  LALHPPS-SLHSMTAVFSRNLDSPLTYSSPG-TATECRELIQQAKQEQLAQNAYS----- 86

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
             +H  L L+S L       G L  S+ +F+ +T  + + + T++       +  + L++
Sbjct: 87  --VHNMLELNSEL-KQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALIL 143

Query: 119 YKQMALQSMYPAEDTYPFVI----RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +  M +Q   P      F+I    ++C   ++   GE +H   VK G  +   V  AL++
Sbjct: 144 FSNMWVQ---PGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALID 200

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y+K     + E+G   R FK +  R    W ++I+  V  G + ++   F  M +    
Sbjct: 201 MYMKVG---KIEQGC--RVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVG 255

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
           +DS T    L+++ +   L  G+ +H   +   F +   V   L +MY+K    +    L
Sbjct: 256 YDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRL 315

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F+KM   D V W  +I+ Y Q G  + ++E    M +S    + +T  A +S+ + +   
Sbjct: 316 FEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIA 375

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           +WG+Q+H +VLR G    +SV NS++ +Y +   L  A  +F  +  K ++SWS++I  Y
Sbjct: 376 KWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVY 435

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
                + EA    S M+ EG + +   + ++L  C ++  LE  K +H + + +G++  +
Sbjct: 436 SQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEA 495

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            V++A+   Y+KCG +E A ++F+  KI+  +II+W +MI+ YA+HG   +   L+ ++ 
Sbjct: 496 MVHSALISMYSKCGSVEEASKIFNGMKIN--NIISWTAMINGYAEHGYSQEAINLFEKIS 553

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              ++PD +TF+G+LTAC +AG+V+ G   F  M   Y   PS+EHY  +++LL RAG +
Sbjct: 554 SVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRL 613

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            EA  +++ MP   D  VW  LL +C++H + +    TAE+L+ ++P +AG ++ L+NIY
Sbjct: 614 SEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIY 673

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           AA G+W   A +R  ++ +G+ K  G SW+ +   ++ F A DQ+HPQ++ I T+L +L 
Sbjct: 674 AAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGDQAHPQSEHITTVLELLS 733

Query: 711 LEIMEGRRE 719
             I + R+E
Sbjct: 734 ANIGDARQE 742


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 214/649 (32%), Positives = 353/649 (54%), Gaps = 41/649 (6%)

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           I SY   G  S + +VF  +   +S+ Y  ++    + GE+E   +++ +M      P  
Sbjct: 66  ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM------PER 119

Query: 132 D--TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
           D  ++  +I+      +     ++  ++ +    S++ +     +     +G  ++ + +
Sbjct: 120 DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQ-----NGCVDDARRV 174

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN---LLRSTVEL 246
             R  +     WN+L+S  VQN K E++  LF          ++  L++   LL   V+ 
Sbjct: 175 FDRMPEKNDVSWNALLSAYVQNSKLEEACVLF-------GSRENWALVSWNCLLGGFVKK 227

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           K +   R       V D    +S NT +++ Y++   +++A+ LFD+    D   W  M+
Sbjct: 228 KKIVEARQFFDSMKVRDV---VSWNT-IITGYAQNGEIDEARQLFDESPVHDVFTWTAMV 283

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL--RNG 364
           S Y Q+   +E+ EL   M       +  +  A ++     + +E  K++  +V+  RN 
Sbjct: 284 SGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELF-DVMPCRN- 337

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               VS  N++I  Y +C  ++ A+ +FD +  +  VSW++MI GY     S EALRLF 
Sbjct: 338 ----VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFV 393

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M+ EG  ++  +  + L  C ++ ALE  K LHG  +K G  +   V  A+ + Y KCG
Sbjct: 394 LMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 453

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            IE A +LF E  +  KDI++WN+MI+ Y++HG   +  + +  MK+  ++PD  T + +
Sbjct: 454 SIEEANDLFKE--MAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAV 511

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC + GLV++GR  F  M + YG  P+ +HYA MV+LLGRAG ++EA  L+K+MPF+P
Sbjct: 512 LSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEP 571

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           DA +WG LL A ++H  TELAE  A+K+ +MEPEN+G YVLLSN+YA++G+W  V K+R 
Sbjct: 572 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 631

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            +RD+G+KK PG SWIEI    H F   D+ HP+ D I+  L  L+L +
Sbjct: 632 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRM 680



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 220/456 (48%), Gaps = 29/456 (6%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++  YA  G +  +++VF+ +   N + +  +L    +  + E+  +         ++
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACV---------LF 206

Query: 129 PAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFDSFD--DV--GDALVEFYIKCDGGF 183
            + + +  V  S +CLL  F+  +KI     +  FDS    DV   + ++  Y + +G  
Sbjct: 207 GSRENWALV--SWNCLLGGFVKKKKIVE--ARQFFDSMKVRDVVSWNTIITGYAQ-NGEI 261

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           +  + +           W +++S  +QN   E++ ELF  M     E +  +   +L   
Sbjct: 262 DEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGY 317

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
           V+ + +E+ + +  V      C+++S    +++ Y++   + +AK LFDKM  +D V W 
Sbjct: 318 VQGERVEMAKELFDVMP----CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWA 373

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+ Y QSG   E+L L + M R G R +  +  +A+S+ + +  +E GKQ+H  +++ 
Sbjct: 374 AMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG 433

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +    V N+L+ MYC+C  +  A  +F  +  K +VSW++MI GY  H    EALR F
Sbjct: 434 GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFF 493

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAK 482
             MK EG++ D  T++ +L AC + G ++  + Y H  +   G+   S     +     +
Sbjct: 494 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGR 553

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            G +E A  L      +  D   W +++ A   HG+
Sbjct: 554 AGLLEEAHNLMKNMPFEP-DAAIWGTLLGASRVHGN 588



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 222/484 (45%), Gaps = 60/484 (12%)

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLM-RMEGAEFD---SGTLIN------------- 238
           D+K  WN  IS  ++ G+  ++  +FK M R     ++   SG L N             
Sbjct: 58  DIKE-WNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 239 ----------LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                     +++  V  ++L   R +       D C   S NT +LS Y++   ++DA+
Sbjct: 117 PERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC---SWNT-ILSGYAQNGCVDDAR 172

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSIST 346
            +FD+M +K+ V WN ++SAY Q+   +E+  L       G R +  L +    +     
Sbjct: 173 RVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVSWNCLLGGFVK 226

Query: 347 MKNIEWGKQMHANV-LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            K I   +Q   ++ +R+     V   N++I  Y +  +++ AR++FD      V +W++
Sbjct: 227 KKKIVEARQFFDSMKVRD-----VVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTA 281

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           M+ GY+ +    EA  LF  M     E + V+   +L   V    +E  K L      + 
Sbjct: 282 MVSGYIQNRMVEEARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAKELFDV---MP 334

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             ++S+ NT I   YA+CG I  A  LFD  K+  +D ++W +MI+ Y++ G   +  +L
Sbjct: 335 CRNVSTWNTMI-TGYAQCGKISEAKNLFD--KMPKRDPVSWAAMIAGYSQSGHSYEALRL 391

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M++   R +  +F   L+ C +   +E G+ +   + +  GYE       +++ +  
Sbjct: 392 FVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYETGCFVGNALLLMYC 450

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAELTAEKLISMEPENAGNY 643
           + G ++EA +L K+M  K D   W  +++    H   E  L    + K   ++P++A   
Sbjct: 451 KCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMV 509

Query: 644 VLLS 647
            +LS
Sbjct: 510 AVLS 513



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 160/346 (46%), Gaps = 30/346 (8%)

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST-MKNIE 351
           K  D D   WN+ IS+Y ++G   E+L +   M R       +++++  + IS  ++N E
Sbjct: 53  KSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPR-------WSSVSYNAMISGYLRNGE 105

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +  ++   +     +  +   N +I  Y    +L  AR++F+ +  + V SW++++ GY 
Sbjct: 106 F--ELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYA 163

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    +A R+F  M     E + V+   +L A V    LE    L G      L S + 
Sbjct: 164 QNGCVDDARRVFDRMP----EKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWN- 218

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
               +   + K   I  A + FD  K+  +D+++WN++I+ YA++G+  +  +L+ +   
Sbjct: 219 ---CLLGGFVKKKKIVEARQFFDSMKV--RDVVSWNTIITGYAQNGEIDEARQLFDESPV 273

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            DV     T+  +++  +   +VEE R +F  M E      ++  + +M+    +   ++
Sbjct: 274 HDV----FTWTAMVSGYIQNRMVEEARELFDRMPER-----NEVSWNAMLAGYVQGERVE 324

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
            A+EL   MP + +   W  +++      +   A+   +K+   +P
Sbjct: 325 MAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 369



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +N+   + +I  YA  G +S ++ +F+ +   + + +  ++   S+ G   + L ++  M
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             +       ++   + +C+ ++    G+++H ++VK G+++   VG+AL+  Y KC G 
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-GS 454

Query: 183 FENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            E    + +    KD+ S WN++I+   ++G  E++   F+ M+ EG + D  T++ +L 
Sbjct: 455 IEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513

Query: 242 STVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDR 299
           +      ++ GR   H +        +      ++ +  +   LE+A  L   M  + D 
Sbjct: 514 ACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDA 573

Query: 300 VVWNIMISA 308
            +W  ++ A
Sbjct: 574 AIWGTLLGA 582



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 135/328 (41%), Gaps = 58/328 (17%)

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           L    D  +   N  I  Y      + A ++F  +   + VS+++MI GY+ + +   A 
Sbjct: 51  LPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELAR 110

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
            LF EM     E D V+   ++   V    L   + L     ++    + S NT I   Y
Sbjct: 111 MLFDEMP----ERDLVSWNVMIKGYVRNRNLGKARELF---ERMPERDVCSWNT-ILSGY 162

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG-------------DWS------- 520
           A+ GC++ A  +FD  ++  K+ ++WN+++SAY ++              +W+       
Sbjct: 163 AQNGCVDDARRVFD--RMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCL 220

Query: 521 -----------QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
                      +  + +  MK  DV    +++  ++T     G ++E R +F E      
Sbjct: 221 LGGFVKKKKIVEARQFFDSMKVRDV----VSWNTIITGYAQNGEIDEARQLFDE------ 270

Query: 570 YEPSQE--HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
             P  +   + +MV+   +   ++EAREL   MP + +   W  +L+    + + E  E+
Sbjct: 271 -SPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS-WNAMLAG---YVQGERVEM 325

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGK 655
             E    M   N   +  +   YA  GK
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGK 353


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/580 (33%), Positives = 328/580 (56%), Gaps = 27/580 (4%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSL 204
           G++IH+ ++  GF +      +L+  Y KC     N+       F D         +N++
Sbjct: 56  GKEIHSYMLINGFLNSPLSITSLINMYSKC-----NQMNFALSIFSDPTHEINVFAFNAI 110

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           IS  + NG  E+ FE ++ MR EG   D  T    +++ +++  LE+ +I H +      
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV--LEIKKI-HGLLFKFGL 167

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ + +AL++ Y K   +E A++ F+++  +D V+WN M++ Y Q G  +  LE    
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M         FT    +S  + M ++  G+ +H   ++ G D  V+V NSLIDMY +C+ 
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE---ALRLFSEMKLEGVEVDFVTIINI 441
           +  A +IF+ ++ K + SW+S++     H+Q  +    LRL   M   G++ D VT+  +
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVS---VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTV 344

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSS------VNTAIFISYAKCGCIEMAGELFDE 495
           LPAC ++ AL H + +HGY +  GL           +  A+   YAKCG +  A  +F  
Sbjct: 345 LPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVF-- 402

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           E++ +KD+ +WN MI  Y  HG  ++  +++++M +  ++PD +TF+G+L+AC +AG V 
Sbjct: 403 ERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +GR    +MK  Y   P+ EHY  ++++LGRAG +DEA EL   MP + +  VW  LL+A
Sbjct: 463 QGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H    LAE+ A+++  +EPE+ G+YVL+SN+Y A G++  V ++R  +R + ++KTP
Sbjct: 523 CRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTP 582

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           GCSWIE+   VH F +AD++HP+A +IY  L  L   + E
Sbjct: 583 GCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLRE 622



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 236/480 (49%), Gaps = 22/480 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNLS 107
           ++IH+ Y++++G   + +  ++LI+ Y+    ++ +  +F+  T   N   +  I+    
Sbjct: 57  KEIHS-YMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G  E+    Y++M  + + P + T+P  I++C   LD +  +KIH  + K G +    
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC---LDVLEIKKIHGLLFKFGLELDVF 172

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           +G ALV  Y+K  G  E+     Q  F++L  R    WN++++   Q G+ E   E F+ 
Sbjct: 173 IGSALVNCYLKF-GLMEHA----QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M  E       T+  +L     +  L  GRI+H  A+   +   ++V+ +L+ MY K   
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +EDA  +F+ M +KD   WN ++S + Q G    +L LL  M+ +G + DL T    + +
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 344 ISTMKNIEWGKQMHANVL-----RNGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            S +  +  G+++H  ++     ++G D   V + N++IDMY +C  +  A  +F+ +  
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSN 407

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-Y 456
           K V SW+ MI GY  H    EAL +FS M    ++ D VT + +L AC + G +   + +
Sbjct: 408 KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF 467

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           L     K  +       T +     + G ++ A EL     I++  ++ W ++++A   H
Sbjct: 468 LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV-WRALLAACRLH 526



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 190/389 (48%), Gaps = 16/389 (4%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C +   +++IH   +   GL  ++ + S L++ Y   GL+  +Q  F  +   + +L+  
Sbjct: 149 CLDVLEIKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 207

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   ++ G++E  L  +++M  +S+ P+  T   V+   + + D  +G  IH   +K+G
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMG 267

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           +DS   V ++L++ Y KC    +  +     + KD+ S WNS++S+  Q G  + +  L 
Sbjct: 268 YDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS-WNSIVSVHEQCGDHDGTLRLL 326

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK------DLSVNTALL 275
             M   G + D  T+  +L +   L +L  GR +H   +VS   K      D+ +  A++
Sbjct: 327 DRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVI 386

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K  S+ DA ++F++MS+KD   WNIMI  Y   G+  E+LE+   M     + D  
Sbjct: 387 DMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 446

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCARKI 391
           T +  +S+ S    +  G+     +++  S Y V+     +  +IDM      L+ A ++
Sbjct: 447 TFVGVLSACSHAGFVSQGRNF---LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503

Query: 392 FDSVKTKT-VVSWSSMIKGYVTHDQSLEA 419
             ++  +   V W +++     H  ++ A
Sbjct: 504 ALTMPIEANPVVWRALLAACRLHKHAVLA 532



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 11/294 (3%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           +L T IA++ + +  KN+  GK++H+ +L NG         SLI+MY +C  +N A  IF
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 393 -DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            D      V +++++I G++T+    E    + +M+ EGV  D  T    + AC+++  L
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV--L 153

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E +K +HG   K GL     + +A+   Y K G +E A   F+E  I  +D++ WN+M++
Sbjct: 154 E-IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI--RDVVLWNAMVN 210

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+ G +    + + +M    V P   T  G+L+     G +  GRII        GY+
Sbjct: 211 GYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII-HGFAMKMGYD 269

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA---CKMHSET 622
                  S++++ G+   +++A E+ + M  K D   W  ++S    C  H  T
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHDGT 322


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 206/660 (31%), Positives = 361/660 (54%), Gaps = 8/660 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H R I+  GL  + ++ ++L+  Y  LG LS +++VF+ I   + + + +++    +
Sbjct: 122 RKVHGR-IVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVE 180

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L + + M  + + P   T   V  +C  +      + +H  V++        +
Sbjct: 181 NGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASL 240

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+  Y +C       KGM +       + W S+IS   QNG  E++ + FK M+   
Sbjct: 241 RNSLIVMYGQCSY-LRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESE 299

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSVNTALLSMYSKLASLEDA 287
            E ++ T+I++L     L  L+ G+ VHC  +  +    DL +  AL+  Y+    +   
Sbjct: 300 VEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSC 359

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + L   + +   V WN +IS Y + G  +E++ L +CM+  G   D F+  +++S+ +  
Sbjct: 360 EKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGA 419

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            ++ +G+Q+H +V + G   +  V NSL+DMY +C  ++ A  IFD +  K++V+W+ MI
Sbjct: 420 SSVRFGQQIHGHVTKRGFADEF-VQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMI 478

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            G+  +  S+EAL+LF EM    ++++ VT ++ + AC N G L   K++H   +  G+ 
Sbjct: 479 CGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQ 538

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               ++TA+   YAKCG ++ A  +F+   +  K +++W++MI+AY  HG  +    L+T
Sbjct: 539 KDLYIDTALVDMYAKCGDLKTAQGVFNS--MPEKSVVSWSAMIAAYGIHGQITAATTLFT 596

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M +S ++P+ +TF+ +L+AC +AG VEEG+  F  M++ YG  P+ EH+AS+V+LL RA
Sbjct: 597 KMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRD-YGIVPNAEHFASIVDLLSRA 655

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G +D A E++K      DA +WG LL+ C++H   +L     ++L  +   + G Y LLS
Sbjct: 656 GDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIHKELREIRTNDTGYYTLLS 715

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP-QADAIYTIL 706
           NIYA  G W    K+R+ +   GLKK PG S IEI   ++ F A D S   Q D IY  L
Sbjct: 716 NIYAEGGNWYESRKVRSRMEGMGLKKVPGYSSIEIDDKIYRFGAGDTSSAWQMDEIYRFL 775



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 165/643 (25%), Positives = 324/643 (50%), Gaps = 20/643 (3%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L   C   + L Q+HA ++++ GLH + + S+ L++SYA +G L  S+ VF +  SP+S 
Sbjct: 7   LFRSCSTLRSLSQLHA-HLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSF 65

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT---YPFVIRSCSCLLDFISGEKIH 154
           ++G ++K       +++ + +Y     +     ++    YP VI++ S +   + G K+H
Sbjct: 66  MFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVH 125

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
            ++VK G  +   +G +L+  Y +     +  K   + + +DL S W+S+++  V+NG+ 
Sbjct: 126 GRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVS-WSSVVACYVENGRP 184

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            +  E+ + M  EG   DS T++++  +  ++  L L + VH   +  +   D S+  +L
Sbjct: 185 REGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSL 244

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY + + L  AK +F+ +SD     W  MIS+  Q+G  +E+++    M  S    + 
Sbjct: 245 IVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNA 304

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLR---NGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            T I+ +   + +  ++ GK +H  +LR   +G+D  +    +L+D Y  C  ++   K+
Sbjct: 305 VTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLG--PALMDFYAACWKISSCEKL 362

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
              +   +VVSW+++I  Y     + EA+ LF  M  +G+  D  ++ + + AC    ++
Sbjct: 363 LCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSV 422

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              + +HG+  K G      V  ++   Y+KCG +++A  +FD  KI  K I+TWN MI 
Sbjct: 423 RFGQQIHGHVTKRGFAD-EFVQNSLMDMYSKCGFVDLAYTIFD--KIWEKSIVTWNCMIC 479

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            ++++G   +  KL+ +M  + +  + +TFL  + AC N+G + +G+ I  ++  S G +
Sbjct: 480 GFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVS-GVQ 538

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                  ++V++  + G +  A+ +   MP K     W  +++A  +H +   A     K
Sbjct: 539 KDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVS-WSAMIAAYGIHGQITAATTLFTK 597

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF---LRDRGL 671
           ++  E     N V   NI +A      V + + +   +RD G+
Sbjct: 598 MV--ESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGI 638



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 218/465 (46%), Gaps = 14/465 (3%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  + RSCS L       ++HA +V  G  S       L+E Y +  G   + + + +  
Sbjct: 4   YMPLFRSCSTLRSL---SQLHAHLVVTGLHSDPLASTKLLESYARM-GSLHSSRLVFETH 59

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI---NLLRSTVELKSLE 250
                  +  LI   + +   ++   L+     +G+           +++++   +  L 
Sbjct: 60  PSPDSFMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLV 119

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           +GR VH   V +    D  + T+LL MY +L  L DA+ +FD++  +D V W+ +++ Y 
Sbjct: 120 VGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYV 179

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           ++G P+E LE+L  MV  G   D  T ++   +   +  +   K +H  V+R       S
Sbjct: 180 ENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDAS 239

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           + NSLI MY +C  L  A+ +F+SV   +   W+SMI     +    EA+  F +M+   
Sbjct: 240 LRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESE 299

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMA 489
           VEV+ VT+I++L  C  +G L+  K +H + ++  ++     +  A+   YA C  I   
Sbjct: 300 VEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSC 359

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            +L     I +  +++WN++IS YA+ G   +   L+  M +  + PD  +    ++AC 
Sbjct: 360 EKLLC--LIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACA 417

Query: 550 NAGLVEEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            A  V  G+ I   + K  +  E  Q    S++++  + G +D A
Sbjct: 418 GASSVRFGQQIHGHVTKRGFADEFVQN---SLMDMYSKCGFVDLA 459


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/580 (33%), Positives = 328/580 (56%), Gaps = 27/580 (4%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSL 204
           G++IH+ ++  GF +      +L+  Y KC     N+       F D         +N++
Sbjct: 56  GKEIHSYMLINGFLNSPLSITSLINMYSKC-----NQMNFALSIFSDPTHEINVFAFNAI 110

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           IS  + NG  E+ FE ++ MR EG   D  T    +++ +++  LE+ +I H +      
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV--LEIKKI-HGLLFKFGL 167

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ + +AL++ Y K   +E A++ F+++  +D V+WN M++ Y Q G  +  LE    
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M         FT    +S  + M ++  G+ +H   ++ G D  V+V NSLIDMY +C+ 
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE---ALRLFSEMKLEGVEVDFVTIINI 441
           +  A +IF+ ++ K + SW+S++     H+Q  +    LRL   M   G++ D VT+  +
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVS---VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTV 344

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSS------VNTAIFISYAKCGCIEMAGELFDE 495
           LPAC ++ AL H + +HGY +  GL           +  A+   YAKCG +  A  +F  
Sbjct: 345 LPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVF-- 402

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           E++ +KD+ +WN MI  Y  HG  ++  +++++M +  ++PD +TF+G+L+AC +AG V 
Sbjct: 403 ERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +GR    +MK  Y   P+ EHY  ++++LGRAG +DEA EL   MP + +  VW  LL+A
Sbjct: 463 QGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H    LAE+ A+++  +EPE+ G+YVL+SN+Y A G++  V ++R  +R + ++KTP
Sbjct: 523 CRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTP 582

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           GCSWIE+   VH F +AD++HP+A +IY  L  L   + E
Sbjct: 583 GCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLRE 622



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 236/480 (49%), Gaps = 22/480 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNLS 107
           ++IH+ Y++++G   + +  ++LI+ Y+    ++ +  +F+  T   N   +  I+    
Sbjct: 57  KEIHS-YMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G  E+    Y++M  + + P + T+P  I++C   LD +  +KIH  + K G +    
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC---LDVLEIKKIHGLLFKFGLELDVF 172

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           +G ALV  Y+K  G  E+     Q  F++L  R    WN++++   Q G+ E   E F+ 
Sbjct: 173 IGSALVNCYLKF-GLMEHA----QVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M  E       T+  +L     +  L  GRI+H  A+   +   ++V+ +L+ MY K   
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +EDA  +F+ M +KD   WN ++S + Q G    +L LL  M+ +G + DL T    + +
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 344 ISTMKNIEWGKQMHANVL-----RNGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            S +  +  G+++H  ++     ++G D   V + N++IDMY +C  +  A  +F+ +  
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSN 407

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-Y 456
           K V SW+ MI GY  H    EAL +FS M    ++ D VT + +L AC + G +   + +
Sbjct: 408 KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNF 467

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           L     K  +       T +     + G ++ A EL     I++  ++ W ++++A   H
Sbjct: 468 LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVV-WRALLAACRLH 526



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 190/389 (48%), Gaps = 16/389 (4%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C +   +++IH   +   GL  ++ + S L++ Y   GL+  +Q  F  +   + +L+  
Sbjct: 149 CLDVLEIKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 207

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   ++ G++E  L  +++M  +S+ P+  T   V+   + + D  +G  IH   +K+G
Sbjct: 208 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMG 267

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           +DS   V ++L++ Y KC    +  +     + KD+ S WNS++S+  Q G  + +  L 
Sbjct: 268 YDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS-WNSIVSVHEQCGDHDGTLRLL 326

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK------DLSVNTALL 275
             M   G + D  T+  +L +   L +L  GR +H   +VS   K      D+ +  A++
Sbjct: 327 DRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVI 386

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K  S+ DA ++F++MS+KD   WNIMI  Y   G+  E+LE+   M     + D  
Sbjct: 387 DMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 446

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCARKI 391
           T +  +S+ S    +  G+     +++  S Y V+     +  +IDM      L+ A ++
Sbjct: 447 TFVGVLSACSHAGFVSQGRNF---LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503

Query: 392 FDSVKTKT-VVSWSSMIKGYVTHDQSLEA 419
             ++  +   V W +++     H  ++ A
Sbjct: 504 ALTMPIEANPVVWRALLAACRLHKHAVLA 532



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 11/294 (3%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           +L T IA++ + +  KN+  GK++H+ +L NG         SLI+MY +C  +N A  IF
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 393 -DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            D      V +++++I G++T+    E    + +M+ EGV  D  T    + AC+++  L
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDV--L 153

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E +K +HG   K GL     + +A+   Y K G +E A   F+E  I  +D++ WN+M++
Sbjct: 154 E-IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI--RDVVLWNAMVN 210

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+ G +    + + +M    V P   T  G+L+     G +  GRII        GY+
Sbjct: 211 GYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRII-HGFAMKMGYD 269

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA---CKMHSET 622
                  S++++ G+   +++A E+ + M  K D   W  ++S    C  H  T
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHDGT 322


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 202/662 (30%), Positives = 355/662 (53%), Gaps = 10/662 (1%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I +G+  +  L S+L++ Y     L  ++QV   +   +   +   L + +     ++ 
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           + ++  M    +   +  +  +I + + L D   GE IHA V K GF+S   + +A V  
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 176 YIK---CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           Y+K    + G++  K M+    ++L SR N+L+S        ++   +   + +EG E +
Sbjct: 135 YMKTQSVENGWQFFKAMM---IENLASR-NNLLSGFCDTETCDQGPRILIQLLVEGFEPN 190

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T I++L++      L  G+ +H   + S    D  +  +L+++Y+K  S   A  +F 
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 250

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           ++ ++D V W  +I+ +   G+    L +   M+  GF  +++T I+ + S S++ +++ 
Sbjct: 251 EIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           GKQ+HA +++N  D    V  +L+DMY +   L  A  IF+ +  + + +W+ ++ GY  
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
             Q  +A++ F +M+ EGV+ +  T+ + L  C  I  L+  + LH  ++K G +    V
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 429

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   YAKCGC+E A  +FD   + S+D ++WN++I  Y++HG   +  K +  M   
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFD--GLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 487

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              PD +TF+G+L+AC + GL+EEG+  F  + + YG  P+ EHYA MV++LGRAG   E
Sbjct: 488 GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHE 547

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
               +++M    +  +W  +L ACKMH   E  E  A KL  +EPE   NY+LLSN++AA
Sbjct: 548 VESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAA 607

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
            G W+ V  +R  +  RG+KK PGCSW+E+   VH F + D SHP+   I+  L  L  +
Sbjct: 608 KGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQK 667

Query: 713 IM 714
           +M
Sbjct: 668 LM 669



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 229/471 (48%), Gaps = 6/471 (1%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           +KI  +V+K G      +  +LV  Y+KC+      + + +   +D++ +WN  +S A  
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQ-QWNQKLSSANS 67

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
               +++ +LF LMR      +     +L+ +   L     G  +H       F  D+ +
Sbjct: 68  PYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILI 127

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           + A ++MY K  S+E+    F  M  ++    N ++S +  +    +   +L+ ++  GF
Sbjct: 128 SNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGF 187

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             +++T I+ + + ++  ++  GK +H  V+++G +    + NSL+++Y +C   N A K
Sbjct: 188 EPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK 247

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F  +  + VVSW+++I G+V        LR+F++M  EG   +  T I+IL +C ++  
Sbjct: 248 VFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 306

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           ++  K +H   +K  L+    V TA+   YAK   +E A  +F+  ++  +D+  W  ++
Sbjct: 307 VDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN--RLIKRDLFAWTVIV 364

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           + YA+ G   +  K + QM++  V+P+  T    L+ C     ++ GR +   M    G 
Sbjct: 365 AGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQ 423

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
                  +++V++  + G +++A E+V D     D   W  ++     H +
Sbjct: 424 SGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQ 473


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 228/733 (31%), Positives = 387/733 (52%), Gaps = 117/733 (15%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANL-GLLSLSQQVFNSITSPN 95
           S+ +   N  HL+Q+HA+ II + LH +    + LI+    L      +  +FNS  +PN
Sbjct: 6   SIASRVGNFSHLRQLHAQ-IIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPN 64

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             ++ ++L+  S   ++ K +L+++ M    + P    YP +I+S         G   HA
Sbjct: 65  VFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN-----GGIGFHA 119

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI------QRKFKDLKSRWNSLISLAV 209
            V+KLG  S   V +A+++ Y +  G   + + +       +RK  D    WN+++S   
Sbjct: 120 HVLKLGHGSDAFVRNAVIDMYARL-GPIGHARKVFDEIPDYERKVAD----WNAMVSGYW 174

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           +     ++  LF +M                                         +++ 
Sbjct: 175 KWESEGQAQWLFDVMPE---------------------------------------RNVI 195

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
             TA+++ Y+K+  LE A+  FD M ++  V WN M+S Y Q+G  +E L L   MV +G
Sbjct: 196 TWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAG 255

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS----VHNSLIDMYCECEDL 385
              D  T +  +S+ S+  +      + A+++R     Q+     V  +L+DMY +C  +
Sbjct: 256 IEPDETTWVTVISACSSRGD----PCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSI 311

Query: 386 NCARKIFD--------------------------------SVKTKTVVSWSSMIKGYVTH 413
             AR+IFD                                ++  + VV+W+SMI GY  +
Sbjct: 312 GAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQN 371

Query: 414 DQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEH----VKYLHGYSMKLGLNS 468
            QS  A+ LF EM   + +  D VT+++++ AC ++GALE     V++L    +KL   S
Sbjct: 372 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKL---S 428

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
           +S  N  IF+ Y++CG +E A  +F E  + ++D++++N++IS +A HG   +   L + 
Sbjct: 429 ISGHNAMIFM-YSRCGSMEDAKRVFQE--MATRDVVSYNTLISGFAAHGHGVEAINLMST 485

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK+  + PD +TF+G+LTAC +AGL+EEGR +F+ +K+     P+ +HYA MV+LLGR G
Sbjct: 486 MKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVG 540

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +++A+  ++ MP +P A V+G LL+A ++H + EL EL A KL  +EP+N+GN++LLSN
Sbjct: 541 ELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSN 600

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           IYA+AG+W  V ++R  ++  G+KKT G SW+E G  +H+F  AD+SH ++D IY +L  
Sbjct: 601 IYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLL-- 658

Query: 709 LELEIMEGRRESS 721
             +E+ +  RE+ 
Sbjct: 659 --IELRKKMREAG 669


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 198/640 (30%), Positives = 354/640 (55%), Gaps = 22/640 (3%)

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           VF+ +   N++ + T++   ++  ++ +   ++ ++  +      +  PFV  +   LL 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGE----GHELNPFVFTTVLKLLV 57

Query: 147 FIS----GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-- 200
            +     G  +H  V+K+G+ S   +G AL++ Y            M +  F ++ S+  
Sbjct: 58  SMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAY-----SVSGCVSMAREVFDEISSKDM 112

Query: 201 --WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             W  +I+   +N    ++ E F  MR+ G + ++ T   +L++ + L++ + G+ VHC 
Sbjct: 113 VSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCS 172

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            + +++ +DL V   LL +Y++    +DA   F  M   D + W+ MIS + QSG  +++
Sbjct: 173 VLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKA 232

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           LE+   M R+    + FT  + + + + +++++  K +H + L+ G    V V N+L+  
Sbjct: 233 LEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMAC 292

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  +  + ++F+++  +  VSW+++I  YV       AL LFS M    V+   VT 
Sbjct: 293 YAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTY 352

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +IL AC  + ALE    +H  + K       +V  A+   YAKCG I+ A  +FD   +
Sbjct: 353 SSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFD--ML 410

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           D +D ++WN++I  Y+ HG   +  K++  MK++  +PD +TF+G+L+AC N G ++EG+
Sbjct: 411 DLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGK 470

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  MK+ YG EP  EHY  MV L+GR+G++D+A + ++D+PF+P   +W  LL AC +
Sbjct: 471 QYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVI 530

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H++ EL  ++A++++ +EP +  ++VLLSNIYA A +W  VA +R  ++ +G+KK PG S
Sbjct: 531 HNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLS 590

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRR 718
           WIE    VH F  AD SH     +  I G+LE   M+ R+
Sbjct: 591 WIENQGNVHCFTVADTSHAD---LKLINGMLEFLNMKTRK 627



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 244/464 (52%), Gaps = 11/464 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   N  + + LID+Y+  G +S++++VF+ I+S + + +  ++ + ++   + + L  +
Sbjct: 76  GYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFF 135

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            QM +    P   T+  V+++C  L +F +G+ +H  V+K  ++    VG  L+E Y +C
Sbjct: 136 SQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRC 195

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
               +N+     R F D+       W+ +IS   Q+G+SEK+ E+F  MR      +  T
Sbjct: 196 G---DNDDAW--RAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFT 250

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
             ++L+++ +++SL+L + +H  A+ +    D+ V+ AL++ Y+K   +E +  LF+ +S
Sbjct: 251 FSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALS 310

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           D++ V WN +I +Y Q G  + +L L   M+R   +A   T  + + + +T+  +E G Q
Sbjct: 311 DRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQ 370

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H    +      V+V N+LIDMY +C  +  AR +FD +  +  VSW+++I GY  H  
Sbjct: 371 VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGL 430

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNT 474
            +EA+++F+ MK    + D +T + +L AC N G L+  K Y        G+       T
Sbjct: 431 GVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYT 490

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +     + G ++ A +  ++   +   ++ W +++ A   H D
Sbjct: 491 CMVWLMGRSGNLDQAVKFIEDIPFEPS-VMIWRALLGACVIHND 533



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 2/259 (0%)

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           M+FD+M +++ V +  +I  Y QS    E+ EL   +   G   + F     +  + +M+
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
             E G+ +H  VL+ G      +  +LID Y     ++ AR++FD + +K +VSW+ MI 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
            Y  +D   EAL  FS+M++ G + +  T   +L AC+ +   +  K +H   +K     
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V   +   Y +CG  + A   F +  +   D+I W+ MIS +A+ G   +  +++ Q
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGD--MPKNDVIPWSFMISRFAQSGQSEKALEIFCQ 238

Query: 529 MKQSDVRPDLITFLGLLTA 547
           M+++ V P+  TF  +L A
Sbjct: 239 MRRAFVIPNQFTFSSVLQA 257


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 205/652 (31%), Positives = 357/652 (54%), Gaps = 10/652 (1%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           ++LI  Y+  G    +  +F  + S   L+ +  ++   +      + LL +  M     
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 128 YPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFEN 185
           YP E  +    R+CS   +F+S G+ I   VVK G+   D  VG  L++ ++K  G   +
Sbjct: 165 YPNEYCFAAATRACSTA-EFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
              + ++  +     W  +I+  +Q G + ++ +LF  M + G E D  TL  ++ +   
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACAN 283

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVW 302
           ++ L LG+ +H  A+      D  V   L++MY+K +   S+  A+ +FD++ D +   W
Sbjct: 284 MELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSW 343

Query: 303 NIMISAYYQ-SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
             MI+ Y Q  G+ +E+L+L   M+ +    + FT  + + + + +  +  G+Q+  + +
Sbjct: 344 TAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV 403

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           + G      V NSLI MY     ++ ARK FD +  K ++S++++I  Y  +  S EAL 
Sbjct: 404 KLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALE 463

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF+E++ +G+     T  ++L    +IG +   + +H   +K GL    SV  A+   Y+
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYS 523

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG IE A ++F  E ++ +++I+W S+I+ +AKHG  +Q  +L+ +M +  VRP+L+T+
Sbjct: 524 RCGNIESAFQVF--EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTY 581

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC + GLV EG   FK M   +G  P  EHYA MV++LGR+G + EA + +  MP
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMP 641

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           +K DA VW   L AC++H   EL +  A+ +I  EP +   Y+LLSN+YA+  KW+ V+ 
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSN 701

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +R  ++++ L K  GCSW+E+   VH+F+  D SHP+A  IY  L  L ++I
Sbjct: 702 IRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKI 753



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 262/523 (50%), Gaps = 19/523 (3%)

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F + T+PN L  G +++ ++  G   K +   + M  Q  +P   TY   ++ C     F
Sbjct: 25  FPTFTNPNPLT-GRLIQEINN-GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSRWNSLI 205
             G  +H ++ +          ++L+  Y KC G +E    + Q     +DL S W++++
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKC-GQWEKATSIFQLMGSSRDLIS-WSAMV 140

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           S    N    ++   F  M   G   +        R+    + + +G  +    V + + 
Sbjct: 141 SCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYL 200

Query: 266 K-DLSVNTALLSMYSK-LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           + D+ V   L+ M+ K    L  A  +F+KM +++ V W +MI+   Q G+  E+++L +
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFL 260

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M+ SG+  D FT    +S+ + M+ +  G+Q+H+  +R+G      V   LI+MY +C 
Sbjct: 261 EMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS 320

Query: 384 ---DLNCARKIFDSVKTKTVVSWSSMIKGYVT---HDQSLEALRLFSEMKLEGVEVDFVT 437
               +  ARKIFD +    V SW++MI GYV    +D+  EAL LF  M L  V  +  T
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDE--EALDLFRGMILTHVIPNHFT 378

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
             + L AC N+ AL   + +  +++KLG +S++ V  ++   YA+ G I+ A + FD   
Sbjct: 379 FSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD--I 436

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  K++I++N++I AYAK+ +  +  +L+ +++   +     TF  LL+   + G + +G
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
             I   + +S G + +Q    +++++  R G+++ A ++ +DM
Sbjct: 497 EQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 198/414 (47%), Gaps = 11/414 (2%)

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           + NG+  K+    + M  +G+  D  T    L+  +  +S ++G +VH     SD   D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKM-SDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
               +L+S+YSK    E A  +F  M S +D + W+ M+S +  +     +L   + M+ 
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECE-DL 385
           +G+  + +   AA  + ST + +  G  +   V++ G     V V   LIDM+ +   DL
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A K+F+ +  +  V+W+ MI   +    + EA+ LF EM L G E D  T+  ++ AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC 281

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC---GCIEMAGELFDEEKIDSKD 502
            N+  L   + LH  +++ GL     V   +   YAKC   G +  A ++FD+  I   +
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQ--ILDHN 339

Query: 503 IITWNSMISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           + +W +MI+ Y + G +  +   L+  M  + V P+  TF   L AC N   +  G  +F
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
               +  G+        S++++  R+G +D+AR+   D+ F+ +   +  ++ A
Sbjct: 400 THAVK-LGFSSVNCVANSLISMYARSGRIDDARKAF-DILFEKNLISYNTVIDA 451



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 121/294 (41%), Gaps = 47/294 (15%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVF---------------NSITS------- 93
           I+ H +  +   SS L  + ANL  L + +QVF               NS+ S       
Sbjct: 368 ILTHVIPNHFTFSSTL-KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGR 426

Query: 94  -------------PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
                         N + Y T++   +K    E+ L ++ ++  Q M  +  T+  ++  
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
            + +     GE+IHA+V+K G      V +AL+  Y +C G  E+      + F+D++ R
Sbjct: 487 AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC-GNIESAF----QVFEDMEDR 541

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIV 255
               W S+I+   ++G + ++ ELF  M  EG   +  T I +L +   +  +  G +  
Sbjct: 542 NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHF 601

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
             +         +     ++ +  +  SL +A    + M  K D +VW   + A
Sbjct: 602 KSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 237/812 (29%), Positives = 393/812 (48%), Gaps = 122/812 (15%)

Query: 5   LPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQN 64
           LPP   L     K   F    T P  + T+S ++L    +    +Q+H+ + I  G + +
Sbjct: 11  LPP---LPKHQTKPPNFSLLHTPPLTSTTYS-TILQSSNSLTLGKQLHS-HSIKTGFYNH 65

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
             + + L+  Y+       +  +F+ +T  N   +  +L+     G + K  +++++   
Sbjct: 66  NFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLC 125

Query: 125 QSMYPAED--TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             +    D   +P V+  C  L D   G ++H  V+K GF +   VG+AL++ Y KC   
Sbjct: 126 DGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSL 185

Query: 183 FENEK---GMIQRKFKDLKSRWNSLISLAVQNGK-------------SE----------- 215
            E +K   GM Q   KD  S WNS+I+  V NG              SE           
Sbjct: 186 DEAKKVLEGMTQ---KDCVS-WNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAV 241

Query: 216 -----------KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
                      +S ELF  M   G   D+ TL ++L +   +K L +G+ +H   V  + 
Sbjct: 242 IGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHEL 301

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMS----------------------------- 295
             +  V  AL+ MY +   ++ A  +F K +                             
Sbjct: 302 FSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQ 361

Query: 296 ------DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
                 ++DR+ WN MIS +  +    ++L L   ++  G   D FT  + ++  + M  
Sbjct: 362 MEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTC 421

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           I  GK++H+  +  G      V  +L++MYC+C D+  A+  FD +  +   +W+++I G
Sbjct: 422 IRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISG 481

Query: 410 Y-----------------------------------VTHDQSLEALRLFSEMKLEGVEVD 434
           Y                                   V + Q   A++LF+EM++  +  D
Sbjct: 482 YARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPD 541

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T+  IL AC  +  +   K +H YS++ G +S + +   +   YAKCG I+   ++++
Sbjct: 542 IYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYN 601

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             KI + +++  N+M++AYA HG   +   ++ +M  S VRPD +TFL +L++CV+AG +
Sbjct: 602 --KISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSI 659

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           + G   F  M E+Y   P+ +HY  MV+LL RAG +DEA +L+K+MP + D+  W  LL 
Sbjct: 660 KIGYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLG 718

Query: 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
            C +H E  L E+ AEKLI +EP N GNYVLL+N+YA+AG+W+ +AK R  + D+G++K+
Sbjct: 719 GCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKS 778

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           PGCSWIE    VH F A+D+SH + + IY +L
Sbjct: 779 PGCSWIEDRDGVHIFLASDKSHQRVEEIYFML 810


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 326/574 (56%), Gaps = 18/574 (3%)

Query: 151 EKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSL 204
           ++IHA+++ LG  F  F      L+   I     F  +    ++ F DL       WN++
Sbjct: 38  KQIHARLLVLGLQFSGF------LITKLIHASSSF-GDITFARQVFDDLPRPQIFPWNAI 90

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I    +N   + +  ++  M++     DS T  +LL++   L  L++GR VH       F
Sbjct: 91  IRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF 150

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELL 322
             D+ V   L+++Y+K   L  A+ +F+ +   +R +  W  ++SAY Q+G P E+LE+ 
Sbjct: 151 DADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIF 210

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M +   + D    ++ +++ + +++++ G+ +HA+V++ G + +  +  SL  MY +C
Sbjct: 211 SQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKC 270

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +  A+ +FD +K+  ++ W++MI GY  +  + EA+ +F EM  + V  D ++I + +
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  +G+LE  + ++ Y  +        +++A+   +AKCG +E A  +FD  +   +D
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD--RTLDRD 388

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           ++ W++MI  Y  HG   +   LY  M++  V P+ +TFLGLL AC ++G+V EG   F 
Sbjct: 389 VVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFN 448

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M + +   P Q+HYA +++LLGRAGH+D+A E++K MP +P   VWG LLSACK H   
Sbjct: 449 RMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHV 507

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           EL E  A++L S++P N G+YV LSN+YAAA  W+ VA++R  ++++GL K  GCSW+E+
Sbjct: 508 ELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
              +  F   D+SHP+ + I   +  +E  + EG
Sbjct: 568 RGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEG 601



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 248/486 (51%), Gaps = 13/486 (2%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SL++   +   L+QIHAR ++L GL  +  L + LI + ++ G ++ ++QVF+ +  P  
Sbjct: 26  SLIDSATHKAQLKQIHARLLVL-GLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQI 84

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
             +  I++  S+   ++  LL+Y  M L  + P   T+P ++++CS L     G  +HAQ
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK------SRWNSLISLAVQ 210
           V +LGFD+   V + L+  Y KC        G  +  F+ L         W +++S   Q
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKC-----RRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           NG+  ++ E+F  MR    + D   L+++L +   L+ L+ GR +H   V      +  +
Sbjct: 200 NGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L +MY+K   +  AK+LFDKM   + ++WN MIS Y ++G+ +E++++   M+    
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV 319

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           R D  +  +A+S+ + + ++E  + M+  V R+     V + ++LIDM+ +C  +  AR 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD    + VV WS+MI GY  H ++ EA+ L+  M+  GV  + VT + +L AC + G 
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +    +         +N        +     + G ++ A E+     +    +  W +++
Sbjct: 440 VREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV-QPGVTVWGALL 498

Query: 511 SAYAKH 516
           SA  KH
Sbjct: 499 SACKKH 504


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 208/640 (32%), Positives = 354/640 (55%), Gaps = 19/640 (2%)

Query: 49  QQIHARYI-ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           ++IHA  I     +  NL L + L++ Y   G +  +++VF+ I + +++ + +++ + +
Sbjct: 164 REIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYA 223

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             G  ++ L +Y+QM    + P   T+   + +C+ L+D   G+ IHA++V    +S D 
Sbjct: 224 NNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMES-DF 279

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           VG AL+  Y +C      +    ++ F+ ++++    W SL++  VQ     ++ +L+  
Sbjct: 280 VGSALINMYARC-----GDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGR 334

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M  EG   D  T +  L +   L +L+ G+ +H       F + L V+TALL+MY+K   
Sbjct: 335 MDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGF-QSLVVHTALLTMYAKCGE 393

Query: 284 LEDAKMLFDKMSDKDRV-VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           L+ A+ +F+++  K  V  W  MISAY Q+G  +E+LEL   MV  G R + +T    ++
Sbjct: 394 LDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLA 453

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S+  ++E G ++H +V  +     V+V N+L+ MY +C  L  A+  F++   K +VS
Sbjct: 454 ACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVS 513

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W++MI  Y  H    EAL L+  M  +GV  D VTI + L AC   G+L+  + +H   +
Sbjct: 514 WNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVL 573

Query: 463 K-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           K     S   V TA+   Y +CG +E A  +F  E +  +D+++W +M SAYA+ G   Q
Sbjct: 574 KNQSFRSSLMVQTALVNMYGRCGRLETARSMF--EDMGQRDVLSWTAMTSAYAQQGHADQ 631

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              LY +M    +RP+ ITF  +L  C +AGL+  G   F EM+  +   P +EH+  MV
Sbjct: 632 VLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMV 691

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +LLGR+G + +A  LV+ MP++PD+  W  +L +CK HS+ + A+  A ++  ++PEN  
Sbjct: 692 DLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTS 751

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            Y LLS+I+ AAG      +++  +++ GLKK PG S IE
Sbjct: 752 LYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 175/570 (30%), Positives = 294/570 (51%), Gaps = 21/570 (3%)

Query: 54  RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL-LYGTILKNLSKFGEY 112
           R+++  G  +N  L + LI  Y N G + L++  F +  S  ++  Y  +L    K G +
Sbjct: 66  RHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLW 125

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG--D 170
            + L +Y +M  +   P + TY  V+ SCS +       +IHA +++      D++   +
Sbjct: 126 NRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQN 185

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
           ALV  Y KC G  E  +    + F  +K+R    W S+IS    NG  +++ +L++ M  
Sbjct: 186 ALVNMYGKC-GSVEEAR----KVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDA 240

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           +G + DS T  + L +  +L     G+ +H   V S+   D  V +AL++MY++   +  
Sbjct: 241 DGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESDF-VGSALINMYARCGDVSS 296

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+  F+K+ +K  V W  +++AY Q+   +E+L+L   M   G  AD  T + A+ + ++
Sbjct: 297 ARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACAS 356

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSS 405
           +  ++ GK +H+ V   G    V VH +L+ MY +C +L+ AR +F+ V+ K  V  W++
Sbjct: 357 LGALKEGKAIHSRVFECGFQSLV-VHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTA 415

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI  Y     + EAL L+ +M  EG   +  T  N+L AC + G LE    +HG+     
Sbjct: 416 MISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSE 475

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L S  +V  A+   YAKCG +E+A   F  E    KD+++WN+MI AYA+HG   +   L
Sbjct: 476 LASNVAVQNALVTMYAKCGSLELAKSAF--EASGRKDLVSWNAMIGAYAQHGLGREALDL 533

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           Y  M    V PD +T    L+AC  +G ++ GR I   + ++  +  S     ++VN+ G
Sbjct: 534 YQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYG 593

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           R G ++ AR + +DM  + D   W  + SA
Sbjct: 594 RCGRLETARSMFEDMG-QRDVLSWTAMTSA 622



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 206/417 (49%), Gaps = 13/417 (3%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-K 297
           LL+    L SL  G++VH   + +   ++  +   L+ MY     +  A+  F   +  K
Sbjct: 48  LLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIK 107

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
               +N M+SAY ++G    +LEL   M   G   D  T    + S S + ++   +++H
Sbjct: 108 AVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIH 167

Query: 358 ANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           A+++      +  +S+ N+L++MY +C  +  ARK+FD +K +  VSW+SMI  Y  +  
Sbjct: 168 ASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGF 227

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EAL L+ +M  +G++ D +T  + L AC     L   K +H   +   + S   V +A
Sbjct: 228 CDEALDLYQQMDADGIQPDSITFTSALLACTK---LVDGKAIHARIVSSNMES-DFVGSA 283

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YA+CG +  A + F  EKI +K ++ W S+++AY +   + +   LY +M    V 
Sbjct: 284 LINMYARCGDVSSARQAF--EKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVH 341

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
            D +T++  L AC + G ++EG+ I   + E  G++    H A ++ +  + G +D AR 
Sbjct: 342 ADGVTYVTALGACASLGALKEGKAIHSRVFEC-GFQSLVVHTA-LLTMYAKCGELDAARA 399

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           +   +  K +   W  ++SA      T+ A    +++++ E      Y   SN+ AA
Sbjct: 400 VFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVA-EGTRPNEYT-FSNVLAA 454


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 212/658 (32%), Positives = 356/658 (54%), Gaps = 17/658 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +L + S L+  +A  G +  ++ +F  ++  N +    ++  L +    E+ + ++
Sbjct: 314 GFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF 373

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGF-DSFDDVGDALVE 174
            +M   S+    ++Y  ++ +        +G++    +HA +++ G  ++   +G+ L+ 
Sbjct: 374 MEMK-DSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLIN 432

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
            Y KC  G  N+  ++ R   +  S  WNS+I+   QN +  ++ + F+ MR       +
Sbjct: 433 MYAKC--GAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSN 490

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T+I+ L S   L  + +G  +HC  +      D+SV+ ALL++Y +   +++ +  F  
Sbjct: 491 FTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSL 550

Query: 294 MSDKDRVVWNIMISAYYQSGFPK--ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           M D D V WN +I A   S  P   E++E  + M+R+G+  +  T I  ++++S++   E
Sbjct: 551 MLDYDHVSWNSLIGALADSE-PSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHE 609

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGY 410
            GKQ+HA VL+       ++ N+L+  Y +C D+     IF  +  +   VSW+SMI GY
Sbjct: 610 LGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGY 669

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
           + ++   +A+ +   M  +G  +D  T   +L AC  +  LE    +HG S++  L S  
Sbjct: 670 IHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDI 729

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            + +A+   YAKCG I+ A   F  E + ++++ +WNSMIS YA+HG  ++   L+ QMK
Sbjct: 730 VIGSALVDMYAKCGRIDYASRFF--EMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMK 787

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
                PD +TF+G+L+AC +AGLV EG   F  M E YG  P  EH++ MV+LLGR G +
Sbjct: 788 LQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGEL 847

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSN 648
           ++  + +  MP KP+  +W  +L AC   +   T L    AE L+ MEP NA NY+LLSN
Sbjct: 848 NKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSN 907

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +YA+ GKW+ VAK R  +R   +KK  GCSW+ +   VH F A D+SHP+ D IY  L
Sbjct: 908 MYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKL 965



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 224/428 (52%), Gaps = 12/428 (2%)

Query: 29  HMTATHSFSLLNLCENPQHL-QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           +M    +F   ++ EN +    ++HA  I    L+  + + + LI+ YA  G ++ +  V
Sbjct: 387 YMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVV 446

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F  + + +S+ + +++  L +  ++ + +  +++M    +YP+  T    + SC+ L   
Sbjct: 447 FRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWI 506

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL----KSRWNS 203
             GE++H + +KLG D    V +AL+  Y +C  G+  E    Q+ F  +       WNS
Sbjct: 507 SVGEQLHCEGLKLGLDLDVSVSNALLALYGEC--GYVKE---CQKAFSLMLDYDHVSWNS 561

Query: 204 LI-SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           LI +LA       ++ E F +M   G + +  T I +L +   L   ELG+ +H + +  
Sbjct: 562 LIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKR 621

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLEL 321
           +   D ++  ALL+ Y K   +   + +F +MSD+ D V WN MIS Y  +    +++++
Sbjct: 622 NVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDM 681

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
           +  M++ G R D FT    +S+ +T+  +E G ++H   +R   +  + + ++L+DMY +
Sbjct: 682 VWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAK 741

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C  ++ A + F+ +  + + SW+SMI GY  H    ++L LF++MKL+G   D VT + +
Sbjct: 742 CGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGV 801

Query: 442 LPACVNIG 449
           L AC + G
Sbjct: 802 LSACSHAG 809



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 147/585 (25%), Positives = 281/585 (48%), Gaps = 35/585 (5%)

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
           +G   +L L + LI+ YA +G L   ++VF+ +   N + +  ++   ++     +   +
Sbjct: 102 NGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACEL 161

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDF--ISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           +++M      P    +  VIR+C    ++    G +IH  + K  + +     + L+  Y
Sbjct: 162 FRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMY 221

Query: 177 IKCDGGFENEKGMIQRKFKDLKSRW-------NSLISLAVQNGKSEKSFELFKLMRME-- 227
                   N  GM+    +   S W       NS+IS+  Q G +  +F++F  M+ E  
Sbjct: 222 -------GNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVM 274

Query: 228 --GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLAS 283
             G + +  T  +L+ +T  L +  L  +   +  V  S F  DL V +AL+S ++K  S
Sbjct: 275 GDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGS 334

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +  AK +F KMS ++ V  N +I    +    +E++EL M M +     +  + +  +++
Sbjct: 335 IGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNSYMIILTA 393

Query: 344 ISTMKNIEWGK----QMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
                 +E GK    ++HA ++R+G  + Q+++ N LI+MY +C  +N A  +F  +  K
Sbjct: 394 FPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNK 453

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
             V+W+SMI G   + Q LEA++ F EM+   +     T+I+ L +C ++G +   + LH
Sbjct: 454 DSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLH 513

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA-KHG 517
              +KLGL+   SV+ A+   Y +CG ++   + F    +   D ++WNS+I A A    
Sbjct: 514 CEGLKLGLDLDVSVSNALLALYGECGYVKECQKAF--SLMLDYDHVSWNSLIGALADSEP 571

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQEH 576
              +  + +  M ++   P+ +TF+ +L A  +  L E G+ I    +K +   + + E+
Sbjct: 572 SMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIEN 631

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             +++   G+ G M     +   M  + D   W  ++S   +H+E
Sbjct: 632 --ALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISG-YIHNE 673



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
            +++H  + +NG    + + N+LI++Y    DL   RK+FD +  + +VSWS +I GY  
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG--ALEHVKYLHGYSMKLG-LNSL 469
           +    EA  LF +M  +G   +     +++ AC   G   L+    +HG   K   +N +
Sbjct: 152 NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           ++ N  I +     G ++ A   FD   I  +++++ NSMIS Y + GD    F +++ M
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDS--IWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 530 KQ----SDVRPDLITFLGLLTAC---VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           ++      ++P+  TF  L++A     N+GLV   +++ +   E  G+       +++V+
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTR--VEKSGFLHDLYVGSALVS 327

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
              +AG +  A+ + + M ++    + G ++   +     E  EL  E   S+E  N  +
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVEL-NPNS 386

Query: 643 YVLL 646
           Y+++
Sbjct: 387 YMII 390


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 208/661 (31%), Positives = 347/661 (52%), Gaps = 82/661 (12%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           L   L+  YA  G L   ++VF+++   N  L+  ++   +K G++++++ ++K M  + 
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
                                I G++  +      F+ FD +          CD      
Sbjct: 196 ---------------------IEGKRPES-----AFELFDKL----------CD------ 213

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
                   +D+ S WNS+IS  V NG +E+   ++K M   G + D  T+I++L      
Sbjct: 214 --------RDVIS-WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANS 264

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            +L LG+ VH +A+ S F + ++ +  LL MYSK   L+ A  +F+KM +++ V W  MI
Sbjct: 265 GTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMI 324

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           + Y + G    +++LL  M + G + D+    + + + +   +++ GK +H  +  N  +
Sbjct: 325 AGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME 384

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             + V N+L+DMY +C  +  A  +F ++  K ++SW++MI                 E+
Sbjct: 385 SNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------GEL 428

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           K      D  T+  +LPAC ++ ALE  K +HGY ++ G +S   V  A+   Y KCG +
Sbjct: 429 K-----PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVL 483

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
            +A  LFD   I SKD+++W  MI+ Y  HG  ++    + +M+ + + PD ++F+ +L 
Sbjct: 484 GLARLLFD--MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC ++GL+E+G   F  MK  +  EP  EHYA MV+LL R G++ +A E ++ +P  PDA
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDA 601

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +WG LL  C+ + + ELAE  AE++  +EPEN G YVLL+NIYA A KW  V ++R  +
Sbjct: 602 TIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKI 661

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQ-SHPQADAIYTILGILELEIMEGRRESSEELK 725
             +GL+K PGCSWIEI   V+ F + +  SHP +  I ++L  +       RR+  EE  
Sbjct: 662 GKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKM-------RRKMKEEGH 714

Query: 726 F 726
           F
Sbjct: 715 F 715



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 226/506 (44%), Gaps = 83/506 (16%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+ I    Q G  E + EL  +   + +E ++ T  ++L+    LKS   G+ VH +  
Sbjct: 69  YNAKILHFCQLGDLENAMELICMC--QKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D ++   L+S Y+    L++ + +FD M  K+  +WN M+S Y + G  KES+ 
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 321 LLMCMVRSGFRA------------------------------------------------ 332
           L   MV  G                                                   
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 333 ---DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              DL T I+ +   +    +  GK +H+  +++  + +++  N+L+DMY +C DL+ A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F+ +  + VVSW+SMI GY    +S  A++L  +M+ EGV++D V I +IL AC   G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L++ K +H Y     + S   V  A+   YAKCG +E A  +F    +  KDII+WN+M
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVV--KDIISWNTM 424

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I                      +++PD  T   +L AC +   +E G+ I   +  + G
Sbjct: 425 I---------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRN-G 462

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAEL 627
           Y   +    ++V+L  + G +  AR L   +P K D   W  +++   MH      +A  
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATF 521

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAA 653
              +   +EP+       +S +YA +
Sbjct: 522 NEMRDAGIEPDEVS---FISILYACS 544



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 142/321 (44%), Gaps = 28/321 (8%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C N   L   + +H+   I     + +  S+ L+D Y+  G L  + +VF  +  
Sbjct: 256 SVLVGCANSGTLSLGKAVHS-LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + + +++   ++ G  +  + + +QM  + +         ++ +C+      +G+ +
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSRWNSLISLAVQNG 212
           H  +     +S   V +AL++ Y KC G  E    +      KD+ S WN++I       
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKC-GSMEAANSVFSTMVVKDIIS-WNTMIG------ 426

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
                 EL         + DS T+  +L +   L +LE G+ +H   + + +  D  V  
Sbjct: 427 ------EL---------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN 471

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+ +Y K   L  A++LFD +  KD V W +MI+ Y   G+  E++     M  +G   
Sbjct: 472 ALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEP 531

Query: 333 DLFTAIAAVSSISTMKNIEWG 353
           D  + I+ + + S    +E G
Sbjct: 532 DEVSFISILYACSHSGLLEQG 552



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 43/264 (16%)

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIF-----DSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           D+QV+ +N+ I  +C+  DL  A ++        ++TKT  S   +  G  +     +  
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKSFT---DGK 119

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF--- 477
           ++ S +K   V VD    + ++      G L+  + +         +++   N  ++   
Sbjct: 120 KVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRV--------FDTMEKKNVYLWNFM 171

Query: 478 -ISYAKCG------CI--------------EMAGELFDEEKIDSKDIITWNSMISAYAKH 516
              YAK G      C+              E A ELFD  K+  +D+I+WNSMIS Y  +
Sbjct: 172 VSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFD--KLCDRDVISWNSMISGYVSN 229

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +   +Y QM    +  DL T + +L  C N+G +  G+ +     +S  +E     
Sbjct: 230 GLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINF 288

Query: 577 YASMVNLLGRAGHMDEARELVKDM 600
             +++++  + G +D A  + + M
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKM 312


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 289/512 (56%), Gaps = 33/512 (6%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK- 293
           T+  ++ +   L    LG+  HC  +   F  +  V + L+ MY+K++ + DAK  FD+ 
Sbjct: 142 TMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEV 201

Query: 294 ------------------------------MSDKDRVVWNIMISAYYQSGFPKESLELLM 323
                                         M+D+D + W  M++ + Q+G   E+LE+  
Sbjct: 202 DSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFR 261

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M   G   D +T  + +++   +  +E GKQ+HA ++R   D  V V ++L+DMY +C 
Sbjct: 262 RMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCR 321

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  A  +F  +  K ++SW+++I GY  +  S EA+R+FSEM+ +G++ D  T+ +++ 
Sbjct: 322 SIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVIS 381

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C N+ +LE     H  ++  GL    +V+ A+   Y KCG IE A  LFDE  +   D 
Sbjct: 382 SCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE--MSFHDQ 439

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W +++S YA+ G   +   L+ +M    V+PD +TF+G+L+AC  AG VE+GR  F  
Sbjct: 440 VSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHS 499

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M++ +G  P  +HY  M++L  R+G + EA E +K MP  PDA  WG LLSAC++  + E
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           + +  AE L+ ++P+N  +YVLL +++AA G+WN VA++R  +RDR +KK PGCSWI+  
Sbjct: 560 IGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEIME 715
             VH F A DQSHP +  IY  L  L  +++E
Sbjct: 620 NKVHIFSADDQSHPCSKGIYEKLEWLNSKMLE 651



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 144/543 (26%), Positives = 262/543 (48%), Gaps = 48/543 (8%)

Query: 23  ANQTRPHMT-ATHSFSLLNLCENP-----QHL--------QQIHARYIILHGLHQNLILS 68
           A +T PH+  A H   L  L   P      HL        +   AR +     H NL   
Sbjct: 16  AARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTY 75

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM--ALQS 126
           + L+ + A+  LLS  + +F S+T  + + Y  ++   S  G + + + VY  +  A  S
Sbjct: 76  NALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSS 135

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK------CD 180
           + P+  T   ++ + S L D   G++ H Q+++LGF +   VG  LV+ Y K        
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 181 GGFE--NEKGMI------------------QRKFKDLKSR----WNSLISLAVQNGKSEK 216
             F+  + K ++                  +R F+ +  R    W ++++   QNG   +
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           + E+F+ MR +G   D  T  ++L +   L +LE G+ +H   + + +  ++ V +AL+ 
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MYSK  S++ A+ +F +M+ K+ + W  +I  Y Q+G  +E++ +   M R G   D +T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + +SS + + ++E G Q H   L +G  + ++V N+L+ +Y +C  +  A ++FD + 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK- 455
               VSW++++ GY    ++ E + LF +M  +GV+ D VT I +L AC   G +E  + 
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           Y H      G+  +    T +   Y++ G ++ A E   +  +   D I W +++SA   
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPM-HPDAIGWGTLLSACRL 554

Query: 516 HGD 518
            GD
Sbjct: 555 RGD 557



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM--KL 428
            +N+L+        L+    +F S+  + +VS++++I G+       +A+R++  +    
Sbjct: 74  TYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQAD 133

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
             V    +T+  ++ A   +G     K  H   ++LG  + + V + +   YAK   +  
Sbjct: 134 SSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGD 193

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A   FDE  +DSK+++ +N+MI+   +     +  +L+  M   D     IT+  ++T  
Sbjct: 194 AKRAFDE--VDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDS----ITWTTMVTGF 247

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
              GL  E   IF+ M+   G    Q  + S++   G    +++ +++
Sbjct: 248 TQNGLESEALEIFRRMRFQ-GIAIDQYTFGSILTACGALSALEQGKQI 294


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 351/638 (55%), Gaps = 10/638 (1%)

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           L ++VF+++     + + T++    +   Y + +  +  M    + P+  ++  V  + S
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 221

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD-GGFENEKGMIQRKFKDLKSRW 201
            L DF +   +H  +VKLG +  +D+       ++  + G  E  K +     +     W
Sbjct: 222 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 281

Query: 202 NSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           N++IS  VQN  S +  +LF + +  E A  D  TL++ + +   L+  EL   +H   +
Sbjct: 282 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 341

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +     + V  AL++MYS+  S++ +  +FD M +KD V WN MISA+ Q+G   E+L 
Sbjct: 342 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 401

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M +     D  T  A +S+ S ++N + GKQ H  +LRNG  ++  + + LIDMY 
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYA 460

Query: 381 ECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           +   +  A+ +F+      +   +W+SM+ GY  +    +A  +  +M  + V  + VT+
Sbjct: 461 KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL 520

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +ILPAC   G ++  K LHG+S++  L+    V TA+   Y+K G I  A  +F   K 
Sbjct: 521 ASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFS--KA 578

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + K I+T+++MI  Y +HG       ++ +M++S ++PD +T + +L+AC  AGLV+EG 
Sbjct: 579 NEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGL 638

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLLSACK 617
            IF+ M+  Y  +PS EH+  + ++LGRAG +D+A E V  +  K +   +WG LL+AC+
Sbjct: 639 QIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACR 698

Query: 618 MHSETELAELTAEKLISMEPENA--GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           +H + EL +L A+KL+ ME  N   G +VLLSNIYA    W  V  +R  +R+RGLKK  
Sbjct: 699 IHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKET 758

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           G SWIEI   ++ F + D+ HPQ+D IY++L  L +E+
Sbjct: 759 GSSWIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEM 796



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 149/497 (29%), Positives = 268/497 (53%), Gaps = 18/497 (3%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF-- 136
           G L L++Q+F+++  P+++L+ TI+  L      ++ LL Y  M   S     D+Y +  
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK--------G 188
           V+++C+   + + G+ +HA  ++   +    V ++L+  Y  C     + K         
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 161

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           ++++ F  ++ R    WN+LI+  V+  +  ++ + F +M   G +    + +N+  +  
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 221

Query: 245 ELKSLELGRIVH--CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
            L   +   +VH   V + S++  DL V ++ + MY++L  LE AK +FD   +++  VW
Sbjct: 222 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 281

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           N MISA+ Q+ F  E ++L    V S   A D  T ++A+S+ S ++  E  +Q+HA V+
Sbjct: 282 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 341

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           +N +  QV V N+LI MY  C  ++ + KIFD++  K VVSW++MI  +V +  + EAL 
Sbjct: 342 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 401

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF EMK + + VD VT+  +L A  ++   +  K  HGY ++ G+     +++ +   YA
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMDSYLIDMYA 460

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           K G IE A  +F++     +D  TWNSM+S Y ++G   Q F +  QM    V P+++T 
Sbjct: 461 KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL 520

Query: 542 LGLLTACVNAGLVEEGR 558
             +L AC  +G ++ G+
Sbjct: 521 ASILPACNPSGYIDWGK 537



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 204/392 (52%), Gaps = 5/392 (1%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG-EYEKTLLVYKQM 122
           +L + S+ I  YA LG L  +++VF++    N+ ++ T++    +     E   L ++ +
Sbjct: 246 DLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAV 305

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             +     E T    I + S L  F   E++HA V+K    +   V +AL+  Y +C+  
Sbjct: 306 ESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSI 365

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
             + K       KD+ S WN++IS  VQNG ++++  LF  M+ +    DS T+  LL +
Sbjct: 366 DTSFKIFDNMPEKDVVS-WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSA 424

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM--SDKDRV 300
             +L++ ++G+  H   ++ +  +   +++ L+ MY+K   +E A+ +F+K    ++D+ 
Sbjct: 425 ASDLRNPDIGKQTHGY-LLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQA 483

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN M+S Y Q+G   ++  +L  M+      ++ T  + + + +    I+WGKQ+H   
Sbjct: 484 TWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFS 543

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           +RN  D  V V  +LIDMY +   +  A  +F     K++V++S+MI GY  H     AL
Sbjct: 544 IRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESAL 603

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            +F  M+  G++ D VT++ +L AC   G ++
Sbjct: 604 FMFHRMQKSGIQPDAVTLVAVLSACSYAGLVD 635


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 196/645 (30%), Positives = 348/645 (53%), Gaps = 9/645 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILS-SNLIDSYANLGLLSLSQQVFNSITSPNS 96
           LL  C   + L+ +H R ++L       I + + L+  YA LG L+ ++ V +    P++
Sbjct: 27  LLPACGTLRSLRALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARGVLDGTPRPDA 86

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQ--SMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
             Y  +L  L   G +   + +++ M  +  +   A+      +++C    DF  G ++H
Sbjct: 87  YAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSLALKACVRSADFRYGRRLH 146

Query: 155 AQVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
             VVK G  D F  V ++LV+ Y K  G  EN + +  R  +     W S++S ++QNG 
Sbjct: 147 CDVVKAGGADGF--VMNSLVDMYAKA-GDLENARKVFDRVPERNVVSWTSMLSGSIQNGI 203

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           +E+   LF  MR +       T++++L +   L  L  GR +H   +      +  ++ +
Sbjct: 204 AEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISAS 263

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL MY+K   +EDA+ +FD++   D V+W  MI  Y Q+  P ++L+L +         +
Sbjct: 264 LLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPN 323

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T    +S+ + ++++  G+ +HA  ++ G+     V N+L+DMY +C+ L  A  IF 
Sbjct: 324 SVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFG 383

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K VV+W+SM+ GY  +  + E+L LF+ M+++G+  D ++++N L ACV +  L  
Sbjct: 384 RILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHI 443

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K  H Y++K    S   VNTA+   Y+KC  +  A  +F++  +  ++ +TW++MI  Y
Sbjct: 444 GKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFND--MTDRNSVTWSAMIGGY 501

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
              GD +    L+ +M + ++ P+ + F  +L+AC + G+V  G+  F  M   +   PS
Sbjct: 502 GMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPS 561

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HYA MV+++ RAG+++EA E +++MP K    VWG  L  CK+HS  E  E   +K+ 
Sbjct: 562 MKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMA 621

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           ++ PE    YVL+SN+Y + G+W+    +R +++++GL K PGCS
Sbjct: 622 ALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCS 666


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 209/653 (32%), Positives = 353/653 (54%), Gaps = 40/653 (6%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           I KN ++    +  L  + +M   ++     T+P ++++C+ L   +   ++HA + +LG
Sbjct: 25  IAKNATQ--NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLG 82

Query: 162 FDSFDDVGDALVEFYIKCDGGF-------ENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             +      ALV+ Y KC   +       E  +G +     D+ S W +LIS    NG  
Sbjct: 83  LAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV-----DVVS-WTALISAYSSNGCV 136

Query: 215 EKSFELFKLMRM----EGAE------FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           +++F+ F  MR     +G+E         G L++          L  G  VH + V   F
Sbjct: 137 DEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGF 196

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFD--KMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                +  +++ MYS    +  A  +F+   +  +D V WN +IS +  +G  + +L   
Sbjct: 197 GVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTF 256

Query: 323 MCMVRSGFRA---DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS----VHNSL 375
             MV  G  A   +  T IA + S + +  +E    +H  +    S   V+    V  +L
Sbjct: 257 EDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTAL 316

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG----- 430
           +DM+  C +L  AR+IFD V+ K VV WS+MI GY       EALRLF +M +EG     
Sbjct: 317 LDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGV 376

Query: 431 -VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            V+ + VT+++++ AC  +GA      +H Y++  GL+  + + +A+    AKCG IE  
Sbjct: 377 EVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHG 436

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            ++F E    ++ +++W+SMI A   HG+  +  +L+++M+     P+ IT++ +L+AC 
Sbjct: 437 RQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACS 496

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGLVE+G+  F  M++ YG  P+ +HYA +V+LLGRAGH+DEA  ++ +MP K D  +W
Sbjct: 497 HAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALW 556

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LL+AC +H   +L E+  +K++S++  + G++VLL+N+Y  AG+W+ V +MR  LR  
Sbjct: 557 GSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRS 616

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSE 722
           GL+K PG S+IEIG  V+ F A D+SHP+++ IY  L  L+  + +  +  +E
Sbjct: 617 GLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTE 669



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 246/533 (46%), Gaps = 43/533 (8%)

Query: 24  NQTRPHMTATHSFS---LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYAN 77
            + + H   +++F+   LL  C   + L    Q+HA Y+   GL  +   ++ L+D+Y  
Sbjct: 41  TRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHA-YLTRLGLAADRFSAAALVDAYGK 99

Query: 78  LGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
            G    + QVF+ +   S + + +  ++   S  G  ++    + +M     +   +   
Sbjct: 100 CGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCG 159

Query: 136 FVIRSCSCLLDFIS----------GEKIHAQVVKLGFDSFDDVGDALVEFYIKCD--GGF 183
             + S   L+   +          G  +H  VVK GF     +G+++V  Y  C   GG 
Sbjct: 160 VDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGA 219

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA---EFDSGTLINLL 240
                 I  + +D+ S WNSLIS    NG++E++   F+ M  EG    E +  T+I LL
Sbjct: 220 WRVFNGIPIEQRDVVS-WNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALL 278

Query: 241 RSTVELKSLELGRIVHCVAVVSD------FCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           +S  EL  +E    VH    +S         KD+ V TALL M+++  +L  A+ +FD +
Sbjct: 279 KSCAELGCVETSSWVH--EYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGV 336

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG------FRADLFTAIAAVSSISTMK 348
             K+ V W+ MI+ Y Q   P+E+L L   M+  G       + +  T ++ +++ S + 
Sbjct: 337 EGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG 396

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSSM 406
                  +H   +  G D    + ++LIDM  +C D+   R++F  +   T+TVVSWSSM
Sbjct: 397 ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSM 456

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHGYSMKLG 465
           I     H +   AL LFSEM+  G E + +T I++L AC + G +E  K   +      G
Sbjct: 457 IGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYG 516

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           ++        +     + G ++ A  +     I + D+  W S+++A   HG+
Sbjct: 517 MSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKA-DLALWGSLLAACHLHGN 568


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 352/638 (55%), Gaps = 10/638 (1%)

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           L ++VF+++     + + T++    +   Y + +  +  M    + P+  ++  V  + S
Sbjct: 138 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 197

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD-GGFENEKGMIQRKFKDLKSRW 201
            L DF +   +H  +VKLG +  +D+       ++  + G  E  K +     +     W
Sbjct: 198 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 257

Query: 202 NSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           N++IS  VQN  S +  +LF + +  E A  D  TL++ + +   L+  EL   +H   +
Sbjct: 258 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 317

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +     + V  AL++MYS+  S++ +  +FD M +KD V WN MISA+ Q+G   E+L 
Sbjct: 318 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 377

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M +     D  T  A +S+ S ++N + GKQ H  +LRNG  ++  + + LIDMY 
Sbjct: 378 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYA 436

Query: 381 ECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           +   +  A+ +F+   +  +   +W+SM+ GY  +    +A  +  +M  + V  + VT+
Sbjct: 437 KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL 496

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +ILPAC   G ++  K LHG+S++  L+    V TA+   Y+K G I  A  +F   K 
Sbjct: 497 ASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVF--SKA 554

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + K I+T+++MI  Y +HG       ++ +M++S ++PD +T + +L+AC  AGLV+EG 
Sbjct: 555 NEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGL 614

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLLSACK 617
            IF+ M+  Y  +PS EH+  + ++LGRAG +D+A E V  +  K +   +WG LL+AC+
Sbjct: 615 QIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACR 674

Query: 618 MHSETELAELTAEKLISMEPENA--GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           +H + EL +L A+KL+ ME  N   G +VLLSNIYA    W  V  +R  +R+RGLKK  
Sbjct: 675 IHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKET 734

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           G SWIEI   ++ F + D+ HPQ+D IY++L  L +E+
Sbjct: 735 GSSWIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEM 772



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 274/512 (53%), Gaps = 21/512 (4%)

Query: 67  LSSNLIDSYANL---GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +S NL+     L   G L L++Q+F+++  P+++L+ TI+  L      ++ LL Y  M 
Sbjct: 3   ISINLVHELCRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMK 62

Query: 124 LQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
             S     D+Y +  V+++C+   + + G+ +HA  ++   +    V ++L+  Y  C  
Sbjct: 63  SSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSS 122

Query: 182 GFENEK--------GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
              + K         ++++ F  ++ R    WN+LI+  V+  +  ++ + F +M   G 
Sbjct: 123 TTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGI 182

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           +    + +N+  +   L   +   +VH   V + S++  DL V ++ + MY++L  LE A
Sbjct: 183 KPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFA 242

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSIST 346
           K +FD   +++  VWN MISA+ Q+ F  E ++L    V S   A D  T ++A+S+ S 
Sbjct: 243 KKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASH 302

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           ++  E  +Q+HA V++N +  QV V N+LI MY  C  ++ + KIFD++  K VVSW++M
Sbjct: 303 LQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTM 362

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I  +V +  + EAL LF EMK + + VD VT+  +L A  ++   +  K  HGY ++ G+
Sbjct: 363 ISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGI 422

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                +++ +   YAK G IE A  +F++     +D  TWNSM+S Y ++G   Q F + 
Sbjct: 423 Q-FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLIL 481

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
            QM    V P+++T   +L AC  +G ++ G+
Sbjct: 482 RQMLDQKVMPNVVTLASILPACNPSGYIDWGK 513



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 204/392 (52%), Gaps = 5/392 (1%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG-EYEKTLLVYKQM 122
           +L + S+ I  YA LG L  +++VF++    N+ ++ T++    +     E   L ++ +
Sbjct: 222 DLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAV 281

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             +     E T    I + S L  F   E++HA V+K    +   V +AL+  Y +C+  
Sbjct: 282 ESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSI 341

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
             + K       KD+ S WN++IS  VQNG ++++  LF  M+ +    DS T+  LL +
Sbjct: 342 DTSFKIFDNMPEKDVVS-WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSA 400

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM--SDKDRV 300
             +L++ ++G+  H   ++ +  +   +++ L+ MY+K   +E A+ +F+K    ++D+ 
Sbjct: 401 ASDLRNPDIGKQTHGY-LLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQA 459

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN M+S Y Q+G   ++  +L  M+      ++ T  + + + +    I+WGKQ+H   
Sbjct: 460 TWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFS 519

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           +RN  D  V V  +LIDMY +   +  A  +F     K++V++S+MI GY  H     AL
Sbjct: 520 IRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESAL 579

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            +F  M+  G++ D VT++ +L AC   G ++
Sbjct: 580 FMFHRMQKSGIQPDAVTLVAVLSACSYAGLVD 611


>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 206/626 (32%), Positives = 332/626 (53%), Gaps = 55/626 (8%)

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE-KGMIQRKFKDLKS 199
           C+ L     G++IHA ++ LG      +   L+ FY   D   + +        F  L  
Sbjct: 102 CTNLKSLSQGKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPL-- 159

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN +ISL V+N   E +  +++ M  +G   D  T  ++L++  EL   + G  VH   
Sbjct: 160 HWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAI 219

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
             S     L V+ AL+ MY +   LE A+ LFD M  +D V WN MIS Y   G   E+ 
Sbjct: 220 QESSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAF 279

Query: 320 ELLMCMVRSGFRAD----------------------LFTAIAAV------------SSIS 345
            L  CM  +G   +                      LF+ + AV            ++ S
Sbjct: 280 RLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNACS 339

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  ++ GK++H + +R   D   +V N+LI MY  C DLN A  +F  +  K +++W++
Sbjct: 340 HIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNA 399

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-- 463
           M+ G+   D+S E   L  EM  EGVE ++VTI +ILP C  I  L+H K  H Y +K  
Sbjct: 400 MLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKRE 459

Query: 464 -------LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
                  L  NSL  +       Y++ G +  A ++FD   +  KD +T+ SMI  Y   
Sbjct: 460 EQFKGYLLLWNSLVEM-------YSRSGKVLEARKVFDS--LSRKDEVTYTSMIMGYGVS 510

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           GD     KL+ +M++ +++PD +T + +L AC ++GLV +G+++F++M E YG +P  EH
Sbjct: 511 GDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEH 570

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           Y+ MV+L GRAG +D+A+E++  M  KP + +W  L+ ACK+H  T + E  A KL+ M+
Sbjct: 571 YSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIHGNTVIGEWAAGKLLEMK 630

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
           P+++G Y+L++N+YAAA + +  A+ RT++RD G K+TPGC+W+++G+ +  F A D S+
Sbjct: 631 PDHSGYYLLIANMYAAANRLDKEAEARTYMRDSGAKRTPGCAWVDVGRELCPFLAGDTSN 690

Query: 697 PQADAIYTILGILELEIMEGRRESSE 722
           P++  I  ++  L + + +     SE
Sbjct: 691 PRSCEISPMMKRLNILMKDAGYAPSE 716



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 248/521 (47%), Gaps = 43/521 (8%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C N + L   +QIHA +II  G+HQN IL S LI+ YA++ LL+ +Q V     S 
Sbjct: 98  LLLGCTNLKSLSQGKQIHA-HIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSF 156

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + L +  ++    K   +E  + VY++M  + + P + TYP V+++C  LLD+ SG  +H
Sbjct: 157 DPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVH 216

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             + +        V +ALV  Y +  G  E  + +           WN++IS     G  
Sbjct: 217 KAIQESSIKWSLFVHNALVFMYGRF-GKLEVARELFDIMPARDDVSWNTMISCYASRGLW 275

Query: 215 EKSFELFKLMRMEGAE----------------------------------FDSGTLINLL 240
           +++F LF  MR  G E                                   DS  ++  L
Sbjct: 276 DEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGL 335

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +   + +++LG+ +H  AV + F    +V   L++MYS+   L  A +LF K+ +K  +
Sbjct: 336 NACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLI 395

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN M+S +      +E   LL  M+R G   +  T  + +   + + N++ GK+ H  +
Sbjct: 396 TWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYM 455

Query: 361 LRNGSDYQ--VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
           ++    ++  + + NSL++MY     +  ARK+FDS+  K  V+++SMI GY        
Sbjct: 456 VKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGET 515

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIF 477
           AL+LF+EM+   ++ D VT++ +L AC + G +   + L    +++ G++      + + 
Sbjct: 516 ALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMV 575

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             + + G ++ A E+           I W ++I A   HG+
Sbjct: 576 DLFGRAGLLDKAKEVITGMSCKPTSAI-WATLIGACKIHGN 615


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 210/667 (31%), Positives = 355/667 (53%), Gaps = 7/667 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H+ Y+I  G  +++ + ++L+  YA  G +  ++ VF+ +     + +  I+   +K 
Sbjct: 163 QVHS-YVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKS 221

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G  E +L ++  M   ++ P +     ++ +CS L     G++IHA V++          
Sbjct: 222 GRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTY 281

Query: 170 DALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           + L++FY KC G  +  K +  R   K++ S W ++I+  +QN    ++ EL   M   G
Sbjct: 282 NVLIDFYTKC-GRVKAGKALFDRLDVKNIIS-WTTMIAGYMQNSYDWEAVELVGEMFRMG 339

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + D     ++L S   + +L+ GR +H   +      D  V  AL+ MYSK  +L+DAK
Sbjct: 340 WKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAK 399

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD ++    V +N MI  Y + G+   +LE+   M          T ++ +   + + 
Sbjct: 400 RVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALL 459

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            ++  KQ+H  +++ G        ++LID+Y +C  +  AR +F+    K +V W+S+  
Sbjct: 460 CLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFS 519

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY    +S EA +L+S+++L     +  T   +  A   + +L H +  H   MK+GL S
Sbjct: 520 GYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLES 579

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              +  A+   YAKCG +E A ++F       KD   WNSMIS YA+HG   +  +++  
Sbjct: 580 DPFITNALVDMYAKCGSVEEAEKIFSSSVW--KDTACWNSMISMYAQHGKVEEALRMFET 637

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M  +++ P+ +TF+ +L+AC + G VE+G   +  M   YG EP  EHYAS+V LLGRAG
Sbjct: 638 MVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAG 696

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            + EARE ++ M  +P A VW  LLSAC++    ELA+  AE  IS++P ++G+YV+LSN
Sbjct: 697 RLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSN 756

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           I+A+ G W  V ++R  +   G+ K PG SWIE+   VH F + D+ H + D IY  L  
Sbjct: 757 IFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSRDKVHDETDLIYLALDE 816

Query: 709 LELEIME 715
           L  ++ +
Sbjct: 817 LTTQMKD 823



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 164/609 (26%), Positives = 309/609 (50%), Gaps = 13/609 (2%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           + +++H + ++L GL  ++ LS+ L+ SY  +G +  +  +F+ + + N + + +++   
Sbjct: 58  YYRKVHCQ-VVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMY 116

Query: 107 SKFGEYEKTLLVYKQMALQSMYP-AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           ++ G  EK LL + +     +    E     +IR+C        G ++H+ V+K GF   
Sbjct: 117 TQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGED 176

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             VG +LV  Y K  G  +  + +           W ++I+   ++G+SE S +LF LM 
Sbjct: 177 VYVGTSLVVLYAK-HGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMM 235

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
                 D   L ++L +   L  L+ G+ +H   + S+   D+S    L+  Y+K   ++
Sbjct: 236 ESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVK 295

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
             K LFD++  K+ + W  MI+ Y Q+ +  E++EL+  M R G++ D +   + ++S  
Sbjct: 296 AGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCG 355

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++  ++ G+Q+H+ V++   ++   V N+LIDMY +C  L+ A+++FD V   +VV +++
Sbjct: 356 SVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNA 415

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI+GY        AL +F EM+L+ V   F+T +++L     +  L+  K +HG  +K G
Sbjct: 416 MIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYG 475

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            +     ++A+   Y+KC CI  A  +F  E   +KDI+ WNS+ S Y       + FKL
Sbjct: 476 FSLDKFTSSALIDVYSKCSCIRDARYVF--EGTTNKDIVVWNSLFSGYNLQLKSEEAFKL 533

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           Y+ ++ S  RP+  TF  L TA      +  G+    ++ +  G E       ++V++  
Sbjct: 534 YSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMK-MGLESDPFITNALVDMYA 592

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS--MEPENAGNY 643
           + G ++EA ++     +K D   W  ++S    H + E A    E ++S  + P    NY
Sbjct: 593 KCGSVEEAEKIFSSSVWK-DTACWNSMISMYAQHGKVEEALRMFETMVSNNINP----NY 647

Query: 644 VLLSNIYAA 652
           V   ++ +A
Sbjct: 648 VTFVSVLSA 656



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 191/367 (52%), Gaps = 14/367 (3%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L NLL + V  KS+   R VHC  V+     D+ ++  LL  Y K+ S+ DA  LFDKM 
Sbjct: 43  LANLLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMP 102

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMKNIEWGK 354
           +++ V W+ ++S Y Q G+ +++L   +   R+   + + +   + + +       E G 
Sbjct: 103 NRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGS 162

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H+ V+++G    V V  SL+ +Y +  +++ AR +FD +  KT V+W+++I GY    
Sbjct: 163 QVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSG 222

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           +S  +L+LF+ M    V  D   + +IL AC  +G L+  K +H Y ++       S   
Sbjct: 223 RSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYN 282

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG-DWSQCFKLYTQMKQSD 533
            +   Y KCG ++    LFD  ++D K+II+W +MI+ Y ++  DW +  +L  +M +  
Sbjct: 283 VLIDFYTKCGRVKAGKALFD--RLDVKNIISWTTMIAGYMQNSYDW-EAVELVGEMFRMG 339

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH----YASMVNLLGRAGH 589
            +PD      +LT+C +   ++ GR I      SY  +   EH      +++++  +   
Sbjct: 340 WKPDEYACSSVLTSCGSVDALQHGRQI-----HSYVIKVCLEHDNFVTNALIDMYSKCNA 394

Query: 590 MDEAREL 596
           +D+A+ +
Sbjct: 395 LDDAKRV 401


>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Brachypodium distachyon]
          Length = 697

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 204/666 (30%), Positives = 360/666 (54%), Gaps = 15/666 (2%)

Query: 44  NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
            P    ++HA  +    LH +  L+S+++ SY       L++ +F+ I  P   L   +L
Sbjct: 19  TPVAAARLHAHLLRSGHLHSSHHLTSHVLASYPT----GLARHLFDEIPVPTPRLANALL 74

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
           +   +  ++   LL+   + ++   P   T   ++++C+ L     G  +HA  ++    
Sbjct: 75  RAHVRARQWCDALLLIPCLRVR---PDAFTLSLLLKACAMLPALAHGRALHALAIR-SCT 130

Query: 164 SFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           ++ D  V  ALV  Y KC G   +          D+  R  S+++   QN  + ++ E F
Sbjct: 131 AYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLR-TSMVTGYEQNRMAAEALEFF 189

Query: 222 -KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
            + +  +G      TL++++ +  +LK +  G+  H   + ++F  DL +  A+L  Y +
Sbjct: 190 SRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMR 249

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
           + +++ A+ LF+ M++KD V W+ M++ Y QSG   E+L     MV +G + +  T ++ 
Sbjct: 250 IGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSV 309

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V + S   +IE G+++H   ++ G + +++V  +L+DMY +C     A ++F  +  K  
Sbjct: 310 VQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLFCRMSKKDA 369

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           V+W+ +I G+  +    E++R+F  M   G   D VT++ +L AC   G +     LHGY
Sbjct: 370 VAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHGY 429

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            +  G      V  A+   Y+KCG +  A  +F  E    KD++ W+SMIS Y  HG   
Sbjct: 430 LVITGFCDKIFVAAALVDLYSKCGNLGCAVRVF--ESAMEKDVVLWSSMISGYGVHGLGQ 487

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           Q  +L+  M  S V+P+ +TF+ +L+AC ++GLV+EG+ IF+ M + YG  P+  H+++M
Sbjct: 488 QAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQVYGVVPNAVHHSAM 547

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGRAG + EA +L+     + DA  W  LL+AC+ H +TE++E+ A KL+ ++P++A
Sbjct: 548 VDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAACRAHHDTEMSEVVAAKLLKLDPDHA 606

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G Y LL+NIY     W+   + R  +RDRGL K PGCS +E+  ++H F A ++ H   +
Sbjct: 607 GYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVELNNVMHTFTAGERPHKDWE 666

Query: 701 AIYTIL 706
            I  +L
Sbjct: 667 KISRLL 672


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 208/650 (32%), Positives = 358/650 (55%), Gaps = 14/650 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLL 117
           G  + + + + LI  Y   G L  ++ +F+ I     +++ + +I+      G+  + L 
Sbjct: 175 GFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALS 234

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLD--FIS-GEKIHAQVVKLGFDSFDDVGDALVE 174
           ++++M  Q +  A +TY FV  +   + D  F+  G  IH   +K    +   V +AL+ 
Sbjct: 235 LFRRM--QEVGVASNTYTFVA-ALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIA 291

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y KC    + E+       +D  S WN+L+S  VQN     +   F+ M+    + D  
Sbjct: 292 MYAKCGRMEDAERVFASMLCRDYVS-WNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQV 350

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           +++NL+ ++    +L  G+ VH  A+ +    ++ +   L+ MY+K   ++     F+ M
Sbjct: 351 SVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECM 410

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            +KD + W  +I+ Y Q+    E++ L   +   G   D     + + + S +K+  + +
Sbjct: 411 HEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIR 470

Query: 355 QMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           ++H  V  R+ +D  + + N+++++Y E    + AR+ F+S+++K +VSW+SMI   V +
Sbjct: 471 EIHGYVFKRDLAD--IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHN 528

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
              +EAL LF  +K   ++ D + II+ L A  N+ +L+  K +HG+ ++ G      + 
Sbjct: 529 GLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA 588

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           +++   YA CG +E + ++F    +  +D+I W SMI+A   HG  ++   L+ +M   +
Sbjct: 589 SSLVDMYACCGTVENSRKMF--HSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDEN 646

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           V PD ITFL LL AC ++GL+ EG+  F+ MK  Y  EP  EHYA MV+LL R+  ++EA
Sbjct: 647 VIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEA 706

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
            + V+ MP KP + VW  LL AC +HS  EL EL A++L+  + +N+G Y L+SNI+AA 
Sbjct: 707 YQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAAD 766

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           G+WN V ++R  ++  GLKK PGCSWIE+   +H F A D+SHPQ D IY
Sbjct: 767 GRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIY 816



 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 172/599 (28%), Positives = 311/599 (51%), Gaps = 15/599 (2%)

Query: 26  TRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLS 82
           T   +   HS  LL+LC   + L   QQ+HAR   L   H +  L++ L+  Y   G L 
Sbjct: 41  TPSRLEHAHSL-LLDLCVAVKALPQGQQLHAR---LLKSHLSAFLATKLLHMYEKCGSLK 96

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            + +VF+ +T      +  ++      G+Y + + +YK+M +  +     T+P V+++C 
Sbjct: 97  DAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACG 156

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD--GGFENEKGMIQRKFKDLKSR 200
            L +   G +IH   VK GF  F  V +AL+  Y KC   GG       I  + +D  S 
Sbjct: 157 ALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVS- 215

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+IS  V  GK  ++  LF+ M+  G   ++ T +  L+   +   ++LG  +H  A+
Sbjct: 216 WNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAAL 275

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S+   D+ V  AL++MY+K   +EDA+ +F  M  +D V WN ++S   Q+   +++L 
Sbjct: 276 KSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALN 335

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M  S  + D  + +  +++     N+  GK++HA  +RNG D  + + N+LIDMY 
Sbjct: 336 YFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYA 395

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +      F+ +  K ++SW+++I GY  ++  LEA+ LF +++++G++VD + I +
Sbjct: 396 KCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGS 455

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC  + +   ++ +HGY  K  L  +   N AI   Y + G  + A   F  E I S
Sbjct: 456 VLRACSGLKSRNFIREIHGYVFKRDLADIMLQN-AIVNVYGEVGHRDYARRAF--ESIRS 512

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KDI++W SMI+    +G   +  +L+  +KQ++++PD I  +  L+A  N   +++G+ I
Sbjct: 513 KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEI 572

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
              +    G+       +S+V++    G ++ +R++   +  + D  +W  +++A  MH
Sbjct: 573 HGFLIRK-GFFLEGPIASSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629



 Score = 39.7 bits (91), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 63/114 (55%), Gaps = 2/114 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  ++I  G      ++S+L+D YA  G +  S+++F+S+   + +L+ +++     
Sbjct: 570 KEIHG-FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGM 628

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
            G   + + ++K+M  +++ P   T+  ++ +CS     + G++   +++K G+
Sbjct: 629 HGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFF-EIMKYGY 681


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 215/662 (32%), Positives = 367/662 (55%), Gaps = 11/662 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  +L + + +I  Y   G L  + ++F+ +   N + + ++++  S+ G + +    +
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299

Query: 120 KQM--ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           + +  +   + P   T   ++  CS   +   G  IH   VKLG      V +AL++ Y 
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359

Query: 178 KCDGGFENEKGMIQRKFKDLKS--RWNSLISLAVQNGKSEKSFELFKLMRMEGA--EFDS 233
           KC  G  +E  ++ RK ++ KS   WNS+I    + G   ++F+L + M ME    E + 
Sbjct: 360 KC--GCLSEAAILFRKIEN-KSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNE 416

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T++NLL + +E   L   R +H  ++   F     +N A ++ Y+K  SL  A+ +F  
Sbjct: 417 VTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFG 476

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M+ K    WN +I  + Q+G P ++L+    M R G   D F+ ++ + +   +  +++G
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           K++H  VLRNG +    V  SL+ +Y  C      R  F+++  K  V W++M+ GY  +
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQN 596

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
           +   EAL LF +M  +G+E D + I +IL AC  + AL   K +H +++K  L   + V 
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVA 656

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            ++   YAK G +  +  +F+  +++ K++ +WN MI+ +  HG  ++  +L+  MK+SD
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFN--RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSD 714

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            +PD  TFLG+L AC +AGLV EG     +M+  Y  EP  EHYA ++++LGRAG ++EA
Sbjct: 715 KQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEA 774

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
              + +MP +PDA++W  LLS+   + + E+ E  AEKL+++E   A +Y+LLSN+YA A
Sbjct: 775 LNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATA 834

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           GKW+ V  +R  ++D  L+K  GCSWIE+   V+ F A + S+P +D I  +   LE +I
Sbjct: 835 GKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQI 894

Query: 714 ME 715
           +E
Sbjct: 895 VE 896



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 201/366 (54%), Gaps = 7/366 (1%)

Query: 200 RWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           +WN+L+S  V+N   +++   F +L+ +   + D+ T   L+++      + LG+ VH +
Sbjct: 176 QWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGM 235

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
           AV      DL V  A++++Y K   L++A  LFDKM +++ + WN +I  + ++GF  E+
Sbjct: 236 AVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEA 295

Query: 319 LELLMCMVRS--GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
                 ++ S  G   D+ T +  +   S   N++ G  +H   ++ G  +++ V N+LI
Sbjct: 296 YRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALI 355

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVD 434
           DMY +C  L+ A  +F  ++ K+VVSW+SMI  Y       E   L  +M +E   +EV+
Sbjct: 356 DMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVN 415

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VTI+N+LPAC+    L  ++ LHGYS++        +N A   +YAKCG +  A  +F 
Sbjct: 416 EVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF- 474

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
              +++K + +WN++I  +A++GD  +    Y +M +  + PD  + + LL AC   GL+
Sbjct: 475 -FGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLL 533

Query: 555 EEGRII 560
           + G+ I
Sbjct: 534 QYGKEI 539



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 10/201 (4%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q+ ++IH  +++ +GL  N  ++ +L+  Y +       +  F ++   NS+ +  +L  
Sbjct: 534 QYGKEIHG-FVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSG 592

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S+     + L +++QM    + P E     ++ +CS L     G+++H   +K      
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMED 652

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
           + V  +L++ Y K   GF    G  QR F  L  +    WN +I+    +G+  K+ ELF
Sbjct: 653 NFVACSLMDMYAK--SGF---LGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELF 707

Query: 222 KLMRMEGAEFDSGTLINLLRS 242
           + M+    + D  T + +L++
Sbjct: 708 EDMKRSDKQPDRFTFLGVLQA 728


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 326/574 (56%), Gaps = 18/574 (3%)

Query: 151 EKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSL 204
           ++IHA+++ LG  F  F      L+   I     F  +    ++ F DL       WN++
Sbjct: 38  KQIHARLLVLGLQFSGF------LITKLIHASSSF-GDITFARQVFDDLPRPQIFPWNAI 90

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I    +N   + +  ++  M++     DS T  +LL++   L  L++GR VH       F
Sbjct: 91  IRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF 150

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELL 322
             D+ V   L+++Y+K   L  A+ +F+ +   +R +  W  ++SAY Q+G P E+LE+ 
Sbjct: 151 DADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIF 210

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M +   + D    ++ +++ + +++++ G+ +HA+V++ G + +  +  SL  MY +C
Sbjct: 211 SHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKC 270

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +  A+ +FD +K+  ++ W++MI GY  +  + EA+ +F EM  + V  D ++I + +
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  +G+LE  + ++ Y  +        +++A+   +AKCG +E A  +FD  +   +D
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD--RTLDRD 388

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           ++ W++MI  Y  HG   +   LY  M++  V P+ +TFLGLL AC ++G+V EG   F 
Sbjct: 389 VVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFN 448

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M + +   P Q+HYA +++LLGRAGH+D+A E++K MP +P   VWG LLSACK H   
Sbjct: 449 LMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHV 507

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           EL E  A++L S++P N G+YV LSN+YAAA  W+ VA++R  ++++GL K  GCSW+E+
Sbjct: 508 ELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
              +  F   D+SHP+ + I   +  +E  + EG
Sbjct: 568 RGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEG 601



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/486 (27%), Positives = 248/486 (51%), Gaps = 13/486 (2%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SL++   +   L+QIHAR ++L GL  +  L + LI + ++ G ++ ++QVF+ +  P  
Sbjct: 26  SLIDSATHKAQLKQIHARLLVL-GLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQI 84

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
             +  I++  S+   ++  LL+Y  M L  + P   T+P ++++CS L     G  +HAQ
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK------SRWNSLISLAVQ 210
           V +LGFD+   V + L+  Y KC        G  +  F+ L         W +++S   Q
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKC-----RRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           NG+  ++ E+F  MR    + D   L+++L +   L+ L+ GR +H   V      +  +
Sbjct: 200 NGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L +MY+K   +  AK+LFDKM   + ++WN MIS Y ++G+ +E++++   M+    
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV 319

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           R D  +  +A+S+ + + ++E  + M+  V R+     V + ++LIDM+ +C  +  AR 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD    + VV WS+MI GY  H ++ EA+ L+  M+  GV  + VT + +L AC + G 
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +    +         +N        +     + G ++ A E+     +    +  W +++
Sbjct: 440 VREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV-QPGVTVWGALL 498

Query: 511 SAYAKH 516
           SA  KH
Sbjct: 499 SACKKH 504


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 306/527 (58%), Gaps = 17/527 (3%)

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           + L + WN          KS  + E +  M+  G + ++ T   L  +   L ++E GR+
Sbjct: 99  RGLSTAWN----------KSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRM 148

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
            HC  +     +D  V+ +L++MY++   + DA+ +FD++S KD V WN MIS Y +   
Sbjct: 149 GHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRH 208

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E++ L   M+ +GF+ +  + ++ + +   + +++ G  +   V+ N       + ++
Sbjct: 209 AGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA 268

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI MY +C DL  AR+IFDS+K K  V+W++MI GY  +  S EA++LF +M++     D
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPD 328

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            +T+I IL AC +IGAL+  K +  Y+ + G      V TA+   YAKCG ++ A  +F 
Sbjct: 329 QITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVF- 387

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM--KQSDVRPDLITFLGLLTACVNAG 552
              + +K+ ++WN+MISA A HG   +   L+  M  +   V P+ ITF+G+L+ACV+AG
Sbjct: 388 -YGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LV+EGR +F  M  S+G  P  EHY+ MV+L  RAGH++EA + V  MP KPD  + G L
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L AC+     +++E   + L+ +EP N+GNYV+ S +YA   +W+  A+MR  ++ +G+ 
Sbjct: 507 LGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVS 566

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
           KTPGCSWI+I   +HEF A D  H +   I+ IL +L   I + RRE
Sbjct: 567 KTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLL---IDDLRRE 610



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 230/454 (50%), Gaps = 12/454 (2%)

Query: 19  LRFPANQTRPHMTA-THSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           L+ P ++  P+  A +  F SLL  C + + L+QIHA+ ++ + +H+     ++ +   A
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQ-LLTNSIHK----PNSFLYKIA 71

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSK-FGEYEKTLLVYKQMALQSMYPAEDTYP 135
           +L   + +   F++I  P    +  +++ LS  + +    L  Y +M    + P   TYP
Sbjct: 72  DLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYP 131

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           F+  +CS LL   +G   H  V++ G D    V  +L+  Y +C    +  K   +   K
Sbjct: 132 FLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQK 191

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           DL S WNS+IS   +   + ++  LF+ M   G + +  +L+++L +  EL  L+LG  V
Sbjct: 192 DLVS-WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWV 250

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
               V +    +  + +AL+ MY K   L  A+ +FD M  KD+V WN MI+ Y Q+G  
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+++L   M  S    D  T I  +S+ +++  ++ GKQ+       G    V V  +L
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTAL 370

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEV 433
           +DMY +C  L+ A ++F  +  K  VSW++MI     H Q+ EAL LF  M  EG  V  
Sbjct: 371 VDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSP 430

Query: 434 DFVTIINILPACVNIGALEHVKYL-HGYSMKLGL 466
           + +T + +L ACV+ G ++  + L H  S   GL
Sbjct: 431 NDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGL 464



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 123/261 (47%), Gaps = 11/261 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +++ + +  N  + S LI  Y   G L  ++++F+S+   + + +  ++   ++ G  E+
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + +++ M + S  P + T   ++ +C+ +     G+++     + GF     VG ALV+
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD 372

Query: 175 FYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            Y KC   D  F    GM  +     +  WN++IS    +G+++++  LFK M  EG   
Sbjct: 373 MYAKCGSLDNAFRVFYGMPNKN----EVSWNAMISALAFHGQAQEALALFKSMMNEGGTV 428

Query: 232 DSG--TLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                T + +L + V    ++ G R+ H ++        +   + ++ ++S+   LE+A 
Sbjct: 429 SPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAW 488

Query: 289 MLFDKMSDK-DRVVWNIMISA 308
                M +K D V+   ++ A
Sbjct: 489 DFVMTMPEKPDEVILGALLGA 509


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/582 (34%), Positives = 322/582 (55%), Gaps = 23/582 (3%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           ++ HAQ++  GF     +   LV  Y  C      E    +  F+ ++++    WNSLI+
Sbjct: 48  QQSHAQILANGFAQNAFLATRLVSAYATC-----GELATSRFVFESVEAKSVYLWNSLIN 102

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             V+N    ++  LF+ M   G   D  TL  + +   EL+ L  G+++H   +   F  
Sbjct: 103 GYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVS 162

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS---AYYQSGFPKES--LEL 321
           D+ V  +L+SMY +     DA  +FD+   ++   +N++IS   A     F         
Sbjct: 163 DVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNF 222

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEW--GKQMHANVLRNGSDYQ----VSVHNSL 375
            + M   GF+AD FT +A++  +      +W  G+++H  V++NG D +    V + +SL
Sbjct: 223 FLRMQCEGFKADAFT-VASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSL 281

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL-EGVEVD 434
           IDMY   + +   R++FD +K + V  W++MI GYV +    +AL L   M++ +G+  +
Sbjct: 282 IDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPN 341

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            V++I+ LPAC  +  L   K +HG+S+K+ LN   S+  A+   Y+KCG ++ A   F+
Sbjct: 342 KVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFE 401

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
                 KD ITW+SMISAY  HG   +    Y +M Q   +PD+IT +G+L+AC  +GLV
Sbjct: 402 TSSY-FKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLV 460

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           +EG  I+K +   Y  +P+ E  A +V++LGR+G +D+A E +K+MP  P   VWG LL+
Sbjct: 461 DEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLT 520

Query: 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
           A  +H  +   +L    L+ +EPEN  NY+ LSN YA+  +W+ V ++RT +++RGLKK 
Sbjct: 521 ASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLKKV 580

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           PGCSWI I    H F  AD++HP +  IY +LG L   + +G
Sbjct: 581 PGCSWITISGKTHSFSVADKAHPSSSLIYEMLGDLVSIMTDG 622



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 144/530 (27%), Positives = 264/530 (49%), Gaps = 35/530 (6%)

Query: 17  KFLRFPANQTRPHMTATHSFS--------LLNLC---ENPQHLQQIHARYIILHGLHQNL 65
           +   F    +R + +AT S +        LL LC    + +  QQ HA+ I+ +G  QN 
Sbjct: 5   RTFSFTLTTSRYYTSATVSLAHTPQSLLHLLQLCIDLRSQKLAQQSHAQ-ILANGFAQNA 63

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            L++ L+ +YA  G L+ S+ VF S+ + +  L+ +++    K  ++ + L ++++M   
Sbjct: 64  FLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRN 123

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            M P + T   V +    L D +SG+ IH + +++GF S   VG++L+  Y +C      
Sbjct: 124 GMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRC-----G 178

Query: 186 EKGMIQRKFKDLKSR----WNSLIS--LAVQNGKSEKSFEL---FKLMRMEGAEFDSGTL 236
           E G   + F +   R    +N +IS   A++N       +L   F  M+ EG + D+ T+
Sbjct: 179 EFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTV 238

Query: 237 INLLRSTV-ELKSLELGRIVHCVAVVSDF----CKDLSVNTALLSMYSKLASLEDAKMLF 291
            +LL     +    + GR +HC  V +        D+ + ++L+ MYS+   +   + +F
Sbjct: 239 ASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVF 298

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAAVSSISTMKNI 350
           D+M +++  VW  MI+ Y Q+G P ++L LL  M ++ G R +  + I+A+ +   +  +
Sbjct: 299 DQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGL 358

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKG 409
             GKQ+H   ++   +  VS+ N+LIDMY +C  L+ AR+ F+ S   K  ++WSSMI  
Sbjct: 359 IGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISA 418

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNS 468
           Y  H +  EA+  + +M  +G + D +T++ +L AC   G + E +        K  +  
Sbjct: 419 YGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEGISIYKSLMTKYEIKP 478

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              +   +     + G ++ A E   E  +D    + W S+++A   HG+
Sbjct: 479 TVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSV-WGSLLTASVIHGN 527


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 209/653 (32%), Positives = 352/653 (53%), Gaps = 40/653 (6%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           I KN ++    +  L  + +M   ++     T+P ++++C+ L   +   ++HA + +LG
Sbjct: 25  IAKNATQ--NPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLG 82

Query: 162 FDSFDDVGDALVEFYIKCDGGF-------ENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             +      ALV+ Y KC   +       E  +G +     D+ S W +LIS    NG  
Sbjct: 83  LAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV-----DVVS-WTALISAYSSNGCV 136

Query: 215 EKSFELFKLMRM----EGAE------FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           +++F  F  MR     +G+E         G L++          L  G  VH + V   F
Sbjct: 137 DEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGF 196

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFD--KMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                +  +++ MYS    +  A  +F+   +  +D V WN +IS +  +G  + +L   
Sbjct: 197 GVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTF 256

Query: 323 MCMVRSGFRA---DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS----VHNSL 375
             MV  G  A   +  T IA + S + +  +E    +H  +    S   V+    V  +L
Sbjct: 257 EDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTAL 316

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG----- 430
           +DM+  C +L  AR+IFD V+ K VV WS+MI GY       EALRLF +M +EG     
Sbjct: 317 LDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGV 376

Query: 431 -VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            V+ + VT+++++ AC  +GA      +H Y++  GL+  + + +A+    AKCG IE  
Sbjct: 377 EVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHG 436

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            ++F E    ++ +++W+SMI A   HG+  +  +L+++M+     P+ IT++ +L+AC 
Sbjct: 437 RQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACS 496

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGLVE+G+  F  M++ YG  P+ +HYA +V+LLGRAGH+DEA  ++ +MP K D  +W
Sbjct: 497 HAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALW 556

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LL+AC +H   +L E+  +K++S++  + G++VLL+N+Y  AG+W+ V +MR  LR  
Sbjct: 557 GSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRS 616

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSE 722
           GL+K PG S+IEIG  V+ F A D+SHP+++ IY  L  L+  + +  +  +E
Sbjct: 617 GLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKYVTE 669



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 246/533 (46%), Gaps = 43/533 (8%)

Query: 24  NQTRPHMTATHSFS---LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYAN 77
            + + H   +++F+   LL  C   + L    Q+HA Y+   GL  +   ++ L+D+Y  
Sbjct: 41  TRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHA-YLTRLGLAADRFSAAALVDAYGK 99

Query: 78  LGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
            G    + QVF+ +   S + + +  ++   S  G  ++    + +M     +   +   
Sbjct: 100 CGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCG 159

Query: 136 FVIRSCSCLLDFIS----------GEKIHAQVVKLGFDSFDDVGDALVEFYIKCD--GGF 183
             + S   L+   +          G  +H  VVK GF     +G+++V  Y  C   GG 
Sbjct: 160 VDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGA 219

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA---EFDSGTLINLL 240
                 I  + +D+ S WNSLIS    NG++E++   F+ M  EG    E +  T+I LL
Sbjct: 220 WRVFNGIPIEQRDVVS-WNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALL 278

Query: 241 RSTVELKSLELGRIVHCVAVVSD------FCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           +S  EL  +E    VH    +S         KD+ V TALL M+++  +L  A+ +FD +
Sbjct: 279 KSCAELGCVETSSWVH--EYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGV 336

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG------FRADLFTAIAAVSSISTMK 348
             K+ V W+ MI+ Y Q   P+E+L L   M+  G       + +  T ++ +++ S + 
Sbjct: 337 EGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG 396

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSSM 406
                  +H   +  G D    + ++LIDM  +C D+   R++F  +   T+TVVSWSSM
Sbjct: 397 ASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSM 456

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHGYSMKLG 465
           I     H +   AL LFSEM+  G E + +T I++L AC + G +E  K   +      G
Sbjct: 457 IGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYG 516

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           ++        +     + G ++ A  +     I + D+  W S+++A   HG+
Sbjct: 517 MSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKA-DLALWGSLLAACHLHGN 568


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/650 (30%), Positives = 347/650 (53%), Gaps = 6/650 (0%)

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           S +L+ S A  G +  + +   ++  P++ L+  +++  +  G     L  Y+ M     
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            P   T+P V++ C+ L     G   H  V+KLG +      ++LV FY K     + E+
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAER 163

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR--MEGAEFDSGTLINLLRSTVE 245
                  +D+ + WN+++   V NG    +   F+ M   +E      G +  L    +E
Sbjct: 164 VFDGMPVRDIVT-WNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLE 222

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           + S++ G+ +H   +     +D+ V T+LL MY K   +  A+ +F  M  +  V WN M
Sbjct: 223 VSSMQ-GKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCM 281

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I  Y  +  P E+ +  M M   G + ++ TAI  +++ +  ++  +G+ +H  V+R   
Sbjct: 282 IGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQF 341

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              V +  +L++MY +   +  + KIF  +  KT+VSW++MI  Y+  +   EA+ LF E
Sbjct: 342 LPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLE 401

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           +  + +  D+ T+  ++PA V +G+L H + +H Y + LG    + +  A+   YA+ G 
Sbjct: 402 LLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGD 461

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  + E+FD  K+ SKD+I+WN+MI  YA HG      +++ +MK + ++P+  TF+ +L
Sbjct: 462 VVASREIFD--KMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVL 519

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           TAC  +GLV+EG + F  M + YG  P  EHY  M +LLGR G + E  + ++ MP  P 
Sbjct: 520 TACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPT 579

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           +RVWG LL+A +  ++ ++AE  AE++  +E +N G Y++LS++YA AG+W  V ++R  
Sbjct: 580 SRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLL 639

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++++GL++T   S +E+      F   D SH Q+  I+ +  IL  +I E
Sbjct: 640 MKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEE 689



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 202/396 (51%), Gaps = 12/396 (3%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  GL  ++   ++L+  YA LGL+  +++VF+ +   + + + T++      G     
Sbjct: 133 VIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLA 192

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--GEKIHAQVVKLGFDSFDDVGDALV 173
           L  +++M   ++    D+   +    +C L+  S  G++IH  V++ G +    VG +L+
Sbjct: 193 LACFQEMH-DALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLL 251

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           + Y KC      E    +  F  +  R    WN +I     N + +++F+ F  MR EG 
Sbjct: 252 DMYCKC-----GEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGL 306

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + +  T INLL +  + +S   GR VH   V   F   + + TALL MY K+  +E ++ 
Sbjct: 307 QVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEK 366

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F K+++K  V WN MI+AY       E++ L + ++      D FT    V +   + +
Sbjct: 367 IFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGS 426

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +   +Q+H+ ++  G      + N+++ MY    D+  +R+IFD + +K V+SW++MI G
Sbjct: 427 LRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMG 486

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           Y  H Q   AL +F EMK  G++ +  T +++L AC
Sbjct: 487 YAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC 522



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 165/364 (45%), Gaps = 10/364 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y+I HGL Q++ + ++L+D Y   G ++ ++ VF ++     + +  ++   + 
Sbjct: 229 KEIHG-YVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYAL 287

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               ++    + QM  + +     T   ++ +C+     + G  +H  VV+  F     +
Sbjct: 288 NERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVL 347

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL+E Y K  G  E+ + +  +        WN++I+  +      ++  LF  +  + 
Sbjct: 348 ETALLEMYGKV-GKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQP 406

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+  ++ + V L SL   R +H   +   + ++  +  A+L MY++   +  ++
Sbjct: 407 LYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASR 466

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSIST 346
            +FDKM  KD + WN MI  Y   G  K +LE+   M  +G + +   F ++    S+S 
Sbjct: 467 EIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 347 MKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSW 403
           + +  W   MH N++    G   Q+  +  + D+     DL    +  +S+    T   W
Sbjct: 527 LVDEGW---MHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVW 583

Query: 404 SSMI 407
            S++
Sbjct: 584 GSLL 587



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/211 (18%), Positives = 100/211 (47%), Gaps = 5/211 (2%)

Query: 35  SFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
           + +LL  C   E+  + + +H  Y++      +++L + L++ Y  +G +  S+++F  I
Sbjct: 313 AINLLAACAQTESSLYGRSVHG-YVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKI 371

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
            +   + +  ++        Y + + ++ ++  Q +YP   T   V+ +   L       
Sbjct: 372 ANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCR 431

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           +IH+ ++ LG+     + +A++  Y +      + +   +   KD+ S WN++I     +
Sbjct: 432 QIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVIS-WNTMIMGYAIH 490

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           G+ + + E+F  M+  G + +  T +++L +
Sbjct: 491 GQGKTALEMFDEMKYNGLQPNESTFVSVLTA 521



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           T   +F LL    + +H +QIH+ YII  G  +N ++ + ++  YA  G +  S+++F+ 
Sbjct: 416 TVVPAFVLLG---SLRHCRQIHS-YIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDK 471

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           + S + + + T++   +  G+ +  L ++ +M    + P E T+  V+ +CS
Sbjct: 472 MVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS 523


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 200/661 (30%), Positives = 353/661 (53%), Gaps = 10/661 (1%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L +N ILS++LI  Y        ++ VF+ +   N + +  ++   ++       + ++ 
Sbjct: 76  LARNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFS 135

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
            M      P E      +R+C+ L D   G ++HAQ +K        V +ALV  Y K  
Sbjct: 136 SMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSK-S 194

Query: 181 GGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFDSGT 235
           G   +   + +R + KDL S W S+I+   Q G+   +  +F+ M  EG     EF  G+
Sbjct: 195 GSVGDGFALFERIRDKDLFS-WGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGS 253

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           +      +V + SLE G  +H + V     ++     +L  MY++   L+ A  +F ++ 
Sbjct: 254 VFRA--CSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIE 311

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
             D V WN +I+A+   G   E++ L   M  S  + D  T +A + +      +  G+ 
Sbjct: 312 SPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRS 371

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H+ +++ G    V V NSLI MY  C D   A  +F     + VV+W+S++   V H  
Sbjct: 372 IHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRH 431

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +  +LF  +      +D +++ N+L A   +G  E  K +H Y+ K+GL S + ++ A
Sbjct: 432 MEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNA 491

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +  +YAKCG ++ A +LF E     +D+ +W+S+I  YA+ G   +   L+ +M+   V+
Sbjct: 492 LIDTYAKCGSLDDANKLF-EIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVK 550

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+ +TF+G+L AC   GLV+EG   +  M+  YG  P++EH + +++LL RAG + EA +
Sbjct: 551 PNHVTFVGVLIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAK 610

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            V  MPF+PD  +W  LL+A + H++ E+ +  AE +++++P ++  YVLL NIYA++G 
Sbjct: 611 FVDQMPFEPDIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGN 670

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           WN  A+++  +R  G++K+PG SWI++   +  F   D+SHP++D +YT+L ++  E+++
Sbjct: 671 WNEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEMYTMLDLIGFEMVK 730

Query: 716 G 716
            
Sbjct: 731 A 731



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 5/372 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           ++ +QIH    + + L +N     +L D YA    L  + +VF  I SP+ + + +++  
Sbjct: 266 EYGEQIHG-LCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINA 324

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S  G   + ++++ +M   S+ P   T   ++ +C        G  IH+ +VKLG    
Sbjct: 325 FSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGD 384

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V ++L+  Y +C   F +   +           WNS+++  VQ+   E  F+LF+L+ 
Sbjct: 385 VMVCNSLISMYTRCL-DFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLH 443

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
                 D  +L N+L ++ EL   E+ + VH  A       D  ++ AL+  Y+K  SL+
Sbjct: 444 SSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLD 503

Query: 286 DAKMLFDKM-SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           DA  LF+ M + +D   W+ +I  Y Q G+ KE+L+L   M   G + +  T +  + + 
Sbjct: 504 DANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIAC 563

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNS-LIDMYCECEDLNCARKIFDSVKTKT-VVS 402
           S +  ++ G   ++ +           H S +ID+      L+ A K  D +  +  ++ 
Sbjct: 564 SRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIM 623

Query: 403 WSSMIKGYVTHD 414
           W++++    TH+
Sbjct: 624 WNTLLAASRTHN 635


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 227/721 (31%), Positives = 374/721 (51%), Gaps = 55/721 (7%)

Query: 28  PHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL---LSLS 84
           P  T     S L  C+    L+Q+H        L + +   + LI +   +G    L+ +
Sbjct: 18  PTTTQKPKNSSLQTCKTLIELKQLHCNM-----LKKGVFNINKLIAACVQMGTHESLNYA 72

Query: 85  QQVFNSITSPNSLLY--GTILKNLSKFGEYEKTLLVYKQMAL-QSMYPAEDTYPFVIRSC 141
              F         LY   T+++  +  G  ++ + +Y  M +   + P   T+PF++ +C
Sbjct: 73  LNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSAC 132

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLK 198
           S ++ F  G ++H  VVK+G      V ++L+ FY  C   D G +    M++R      
Sbjct: 133 SKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNV---- 188

Query: 199 SRWNSLIS-LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
             W SLI+  +V N   E     F+++ + G E +  T++  + +  +LK LELG+ V  
Sbjct: 189 VSWTSLINGYSVVNMAKEAVCLFFEMVEV-GVEPNPVTMVCAISACAKLKDLELGKKVCN 247

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           +        +  V  ALL MY K   +   + +FD+ SDK+ V++N ++S Y Q G   E
Sbjct: 248 LMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGE 307

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
            L +L  M++ G R D  T ++ +++ + + ++  GK  HA V RNG +   ++ N++ID
Sbjct: 308 VLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIID 367

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE-ALRLFSEM---------- 426
           MY +C     A K+FDS+  KTVV+W+S+I G V  D  LE ALR+F EM          
Sbjct: 368 MYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLV-RDGELELALRIFGEMPESNLVSWNT 426

Query: 427 ---------------------KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
                                + +G++ D VT++ I  AC  +GAL+  K+++ Y  K  
Sbjct: 427 MIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKND 486

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           ++    + TA+   +++CG    A  +F  E ++ +D+  W + I   A  G+     +L
Sbjct: 487 IHIDMQLGTALVDMFSRCGDPLNAMRVF--ENMEKRDVSAWTAAIRVKAVEGNAKGAIEL 544

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M + DV+ D   F+ LLTA  + G V++GR +F  M++ +G  P   HY  MV+LLG
Sbjct: 545 FDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLG 604

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG ++EA +L+K MP KP+  +WG  L+AC+ H   E A    EK+  + PE  G +VL
Sbjct: 605 RAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVL 664

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNIYA+AGKWN VA++R  ++++G +K  G S IE+  L+ EF + D+SH +   I  +
Sbjct: 665 LSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLM 724

Query: 706 L 706
           L
Sbjct: 725 L 725


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 193/537 (35%), Positives = 296/537 (55%), Gaps = 34/537 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I       K   +F  F  M     E DS + +  L++  + +++  G  V+CV  
Sbjct: 225 WNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVW 284

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  +L V   L+  Y++   L++A+ +FD+ SDKD V W  MI  Y      +E++E
Sbjct: 285 KMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAME 344

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M+ S    +  T IA VS+ S M N+E GK++H  V        +S+HN+L+DMY 
Sbjct: 345 VFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYV 404

Query: 381 ECE-------------------------------DLNCARKIFDSVKTKTVVSWSSMIKG 409
           +C+                               DL  AR+ FD    K  V WS+MI G
Sbjct: 405 KCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAG 464

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y  +++  E+L+LF EM   GV     T++++L AC  +  L    ++H Y +   +  L
Sbjct: 465 YSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPL 524

Query: 470 S-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
           S ++  AI   YAKCG I+ A E+F    +  +++I+WN+MI+ YA +G   Q   ++ Q
Sbjct: 525 SVTLENAIVDMYAKCGSIDAATEVFS--TMPERNLISWNTMIAGYAANGRAKQAINVFDQ 582

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M+     P+ ITF+ LLTAC + GL+ EGR  F  M+  YG +P + HYA MV+LLGR G
Sbjct: 583 MRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTG 642

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            ++EA +L+ +MP +P    WG LL+AC+MH   ELA L+A  L+ ++PE++G YVLL+N
Sbjct: 643 LLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLAN 702

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
             A   KW+ V ++R+ ++D+G+KK PG S IEI     EF  AD+SHPQ++ IY +
Sbjct: 703 TCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIYKL 759



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/547 (23%), Positives = 251/547 (45%), Gaps = 49/547 (8%)

Query: 15  HVKFLRFPANQTRPH-----MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSS 69
           H+K   F  N+ + +     +    +  ++  C   + L+QI AR + L G+  +    S
Sbjct: 135 HIKPFSFTTNKPKWNSPTNVIITNPTLLIMESCSTMRQLKQIQAR-MTLTGIITHAFPVS 193

Query: 70  NLID--SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            +I   + A+ G L  +  +FN +  PN+ ++ T+++    +    K +  +        
Sbjct: 194 RVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRG---YQNARKPIFAFSFFVYMFQ 250

Query: 128 YPAE---DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
              E    ++ F +++C        GE ++  V K+GFD    V + L+ FY +  G  +
Sbjct: 251 LRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAE-RGLLK 309

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           N + +           W ++I     +  SE++ E+F+LM +   E +  TLI ++ +  
Sbjct: 310 NARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACS 369

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD------ 298
           ++ +LE+G+ VH      +    LS++ ALL MY K   L DA+ LFD+M+ KD      
Sbjct: 370 DMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTS 429

Query: 299 -------------------------RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
                                     V W+ MI+ Y Q+  PKESL+L   M+  G    
Sbjct: 430 MVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPI 489

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHAN-VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
             T ++ +S+   +  +  G  +H   V+       V++ N+++DMY +C  ++ A ++F
Sbjct: 490 EHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVF 549

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL- 451
            ++  + ++SW++MI GY  + ++ +A+ +F +M+  G E + +T +++L AC + G + 
Sbjct: 550 STMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLIS 609

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E  +Y      K G+         +     + G +E A +L     +   +   W ++++
Sbjct: 610 EGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCE-AAWGALLN 668

Query: 512 AYAKHGD 518
           A   HG+
Sbjct: 669 ACRMHGN 675



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 182/399 (45%), Gaps = 36/399 (9%)

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             L  A  +F+++   +  +WN MI  Y  +  P  +    + M +     D  + + A+
Sbjct: 205 GDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFAL 264

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            +    + +  G+ ++  V + G D ++ V N LI  Y E   L  AR++FD    K VV
Sbjct: 265 KACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVV 324

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           +W++MI GY  HD S EA+ +F  M L  VE + VT+I ++ AC ++G LE  K +H   
Sbjct: 325 TWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKV 384

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD--- 518
            +  +    S++ A+   Y KC C+  A ELFD  ++ +KD+ +W SM++ YAK GD   
Sbjct: 385 EEKNMRCSLSLHNALLDMYVKCDCLVDARELFD--RMATKDVYSWTSMVNGYAKCGDLES 442

Query: 519 ---------------WS-------------QCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
                          WS             +  KL+ +M +  V P   T + +L+AC  
Sbjct: 443 ARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQ 502

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
              +  G  I +          S     ++V++  + G +D A E+   MP + +   W 
Sbjct: 503 LTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPER-NLISWN 561

Query: 611 PLLSACKMHSETELAELTAEKLISM--EPENAGNYVLLS 647
            +++    +   + A    +++ +M  EP N     LL+
Sbjct: 562 TMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLT 600


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 292/511 (57%), Gaps = 5/511 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++IS   QN K  ++   F  MR+ G         + +R+   L S+E+G+ +HC+A+
Sbjct: 9   WTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLAL 68

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 +L V + L  MYSK  ++ DA  +F++M  KD V W  MI  Y + G  +E+L 
Sbjct: 69  KFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALL 128

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M+      D     + + +   +K  ++G+ +H++V++ G +  + V N+L DMY 
Sbjct: 129 AFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYS 188

Query: 381 ECEDLNCARKIF--DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           +  D+  A  +F  DS + + VVS++ +I GYV  +Q  + L +F E++ +G+E +  T 
Sbjct: 189 KAGDMESASNVFGIDS-ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTF 247

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +++ AC N  ALE    LH   MK+  +    V++ +   Y KCG +E A + FDE  I
Sbjct: 248 SSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE--I 305

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
                I WNS++S + +HG      K++ +M    V+P+ ITF+ LLT C +AGLVEEG 
Sbjct: 306 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGL 365

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  M ++YG  P +EHY+ +++LLGRAG + EA+E +  MPF+P+A  W   L AC++
Sbjct: 366 DYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 425

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H + E+ +L AEKL+ +EP+N+G  VLLSNIYA   +W  V  +R  +RD  +KK PG S
Sbjct: 426 HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 485

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           W+++G   H F A D SHP+  AIY  L  L
Sbjct: 486 WVDVGYKTHVFGAEDWSHPRKSAIYEKLDTL 516



 Score =  145 bits (366), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 197/426 (46%), Gaps = 4/426 (0%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + +  ++  LS+  ++ + +  +  M +    P +  +   IR+C+ L     G+++H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
              +K G  S   VG  L + Y KC   F+  K   +   KD  S W ++I    + G+ 
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDGYSKIGEF 123

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E++   FK M  E    D   L + L +   LK+ + GR VH   V   F  D+ V  AL
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 183

Query: 275 LSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
             MYSK   +E A  +F   S+ ++ V +  +I  Y ++   ++ L + + + R G   +
Sbjct: 184 TDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 243

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            FT  + + + +    +E G Q+HA V++   D    V + L+DMY +C  L  A + FD
Sbjct: 244 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFD 303

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +   T ++W+S++  +  H    +A+++F  M   GV+ + +T I++L  C + G +E 
Sbjct: 304 EIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEE 363

Query: 454 -VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            + Y +      G+       + +     + G ++ A E  +    +  +   W S + A
Sbjct: 364 GLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEP-NAFGWCSFLGA 422

Query: 513 YAKHGD 518
              HGD
Sbjct: 423 CRIHGD 428



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 181/366 (49%), Gaps = 12/366 (3%)

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  ++ V W  MIS   Q+    E++     M   G     F   +A+ + +++ +IE G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           KQMH   L+ G   ++ V ++L DMY +C  +  A K+F+ +  K  VSW++MI GY   
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
            +  EAL  F +M  E V +D   + + L AC  + A +  + +H   +KLG  S   V 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDS--KDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
            A+   Y+K G +E A  +F    IDS  ++++++  +I  Y +     +   ++ ++++
Sbjct: 181 NALTDMYSKAGDMESASNVFG---IDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRR 237

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHM 590
             + P+  TF  L+ AC N   +E+G  +  + MK ++  +P     + +V++ G+ G +
Sbjct: 238 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLL 295

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI--SMEPENAGNYVLLSN 648
           ++A +   ++   P    W  L+S    H   + A    E+++   ++P NA  ++ L  
Sbjct: 296 EQAIQAFDEIG-DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP-NAITFISLLT 353

Query: 649 IYAAAG 654
             + AG
Sbjct: 354 GCSHAG 359



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 157/317 (49%), Gaps = 15/317 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G+   L + SNL D Y+  G +  + +VF  +   + + +  ++   SK GE+E+ LL +
Sbjct: 71  GIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAF 130

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           K+M  + +   +      + +C  L     G  +H+ VVKLGF+S   VG+AL + Y K 
Sbjct: 131 KKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKA 190

Query: 180 DGGFENEKGM--IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
            G  E+   +  I  + +++ S +  LI   V+  + EK   +F  +R +G E +  T  
Sbjct: 191 -GDMESASNVFGIDSECRNVVS-YTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFS 248

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +L+++     +LE G  +H   +  +F +D  V++ L+ MY K   LE A   FD++ D 
Sbjct: 249 SLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDP 308

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
             + WN ++S + Q G  K+++++   MV  G + +  T I+ ++  S           H
Sbjct: 309 TEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCS-----------H 357

Query: 358 ANVLRNGSDYQVSVHNS 374
           A ++  G DY  S+  +
Sbjct: 358 AGLVEEGLDYFYSMDKT 374


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 207/657 (31%), Positives = 348/657 (52%), Gaps = 12/657 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLI-DSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           HL +  AR +     H+N I S NLI  +Y++ G L  +Q +F S    N+  +  +++ 
Sbjct: 58  HLHR--ARAMFDQMPHKN-IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRA 114

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            +  G     L +++ M  + + P   T   V+    C +       +H   +K G D+ 
Sbjct: 115 HAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTH 169

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V + L++ Y K        +  ++   KD  + +N+++    + G   ++ +LF  MR
Sbjct: 170 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVT-YNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G      T  ++L     +  L LG  VH + + S    ++ VN +LL  YSK   L+
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLD 288

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           D + LFD+M ++D V +N++I+AY  +      L L   M + GF   +      +S   
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++ ++  GKQ+HA ++  G   +  + N+LIDMY +C  L+ A+  F +   K+ +SW++
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 408

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I GYV + Q  EAL+LFS+M+  G+  D  T  +I+ A  ++  +   + LH Y ++ G
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             S     + +   YAKCGC++ A   FDE  +  ++ I+WN++ISAYA +G+     K+
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDE--MPERNSISWNAVISAYAHYGEAKNAIKM 526

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M      PD +TFL +L AC + GL +E    F  MK  Y   P +EHYA +++ LG
Sbjct: 527 FEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLG 586

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           R G   + ++++ +MPFK D  +W  +L +C++H   ELA + A+KL  MEP +A  YV+
Sbjct: 587 RVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 646

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           LSNIYA AG+W   A ++  +RDRG++K  G SW+EI + ++ F + D + P  D I
Sbjct: 647 LSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 703


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 212/696 (30%), Positives = 367/696 (52%), Gaps = 48/696 (6%)

Query: 48  LQQIHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
           ++ IH    R+ +L G      +S+ L+ +YA  G L+ +  +F+++ S +++ + +++ 
Sbjct: 76  VRSIHGAALRHDLLDG--PTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIA 133

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFD 163
            L  F  +   L   + M L+       T   V+ +CS L  D   G + HA  +K GF 
Sbjct: 134 ALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFL 193

Query: 164 SFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---------WNSLISLAVQNG 212
             D+    +AL+  Y +   G  ++    Q  F  + +          WN+++SL VQ+G
Sbjct: 194 DGDERFAFNALLSMYARL--GLVDDA---QTLFGSVGATDVPGGGVVTWNTMVSLLVQSG 248

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAVVSDFCKDLSVN 271
           +  ++ E+   M   G   D  T  + L +  +L+ L LGR +H  V   +D   +  V 
Sbjct: 249 RCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVA 308

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSG 329
           +AL+ MY+    +  A+++FD +   +R +  WN MI  Y Q+G  +++LEL   M    
Sbjct: 309 SALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEA 368

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQ-MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
                 T IA V           GK+ +H  V++ G      V N+L+D+Y    D++ A
Sbjct: 369 GVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAA 428

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF------------- 435
           R IF +++ + VVSW+++I G V      +A +L  EM+ +G   D              
Sbjct: 429 RWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEP 488

Query: 436 -----VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
                +T++ +LP C  + A    K +HGY+++  L+S  +V +A+   YAKCGC+ ++ 
Sbjct: 489 VVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSR 548

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACV 549
            +FD  ++  +++ITWN +I AY  HG   +   L+ +M  SD  +P+ +TF+  L AC 
Sbjct: 549 AVFD--RLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACS 606

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARV 608
           ++G+V+ G  +F+ MK ++G EP+ + +A  V++LGRAG +DEA  ++  M P +     
Sbjct: 607 HSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSA 666

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           W   L AC++H    L E+ AE+L  +EP+ A +YVLL NIY+AAG W   +++R+ +R 
Sbjct: 667 WSSFLGACRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQ 726

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           RG+ K PGCSWIE+  ++H F A + +HP++  ++ 
Sbjct: 727 RGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHA 762



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 139/591 (23%), Positives = 248/591 (41%), Gaps = 57/591 (9%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNS-----LLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           L+  YA LGL+  +Q +F S+ + +      + + T++  L + G   + + V   M  +
Sbjct: 204 LLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVAR 263

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK---LGFDSFDDVGDALVEFYIKCD-- 180
            + P   T+   + +CS L     G ++HA V+K   L  +SF  V  ALV+ Y   +  
Sbjct: 264 GVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSF--VASALVDMYASHERV 321

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NL 239
           G       M+    + L   WN++I    Q G  E + ELF  M  E     S T I  +
Sbjct: 322 GAARLVFDMVPAGERQL-GLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGV 380

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S    ++      VH   V      +  V  AL+ +Y++L  ++ A+ +F  +  +D 
Sbjct: 381 LPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDV 440

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT--AIAAVSSISTMKN-------- 349
           V WN +I+     G  +++ +L+  M + G   D  T   IA       + N        
Sbjct: 441 VSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLL 500

Query: 350 --------IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
                      GK++H   +R+  D  V+V ++L+DMY +C  L  +R +FD +  + V+
Sbjct: 501 PGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVI 560

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEH-VKYLHG 459
           +W+ +I  Y  H    EA+ LF  M   +  + + VT I  L AC + G ++  ++    
Sbjct: 561 TWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRS 620

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
                G+     ++        + G ++ A  +    +   + +  W+S + A   H + 
Sbjct: 621 MKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNV 680

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNA-GLVEEGRIIFKEMKESYGYEPSQEHYA 578
           +         +  ++ PD  +   LL    +A GL E+   +   M++      S+E   
Sbjct: 681 A--LGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQR---GVSKEPGC 735

Query: 579 SMVNLLG-----RAG------------HMDEARELVKDMPFKPDARVWGPL 612
           S + L G      AG            HMD   E ++D  + PD  +  P+
Sbjct: 736 SWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRDQGYTPDTTLIKPV 786



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 192/408 (47%), Gaps = 34/408 (8%)

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC--KDLSVNTALLSMYSKLASLEDAK 288
            D   L    +S   L+SL   R +H  A+  D       +V+ ALL+ Y++   L  A 
Sbjct: 55  LDRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAAL 114

Query: 289 MLFDKMSDKDRVVWNIMISA--YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            LFD M  +D V +N +I+A   ++   P  +L+ L  M+  G     FT ++ + + S 
Sbjct: 115 ALFDAMPSRDAVTFNSLIAALCLFRRWLP--ALDALRDMLLEGHPLTSFTLVSVLLACSH 172

Query: 347 M-KNIEWGKQMHANVLRNG---SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT--- 399
           + +++  G++ HA  L+NG    D + +  N+L+ MY     ++ A+ +F SV       
Sbjct: 173 LAEDLRLGREAHAFALKNGFLDGDERFAF-NALLSMYARLGLVDDAQTLFGSVGATDVPG 231

Query: 400 --VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
             VV+W++M+   V   +  EA+ +  +M   GV  D VT  + LPAC  +  L   + +
Sbjct: 232 GGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREM 291

Query: 458 HGYSMK---LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           H Y +K   L  NS   V +A+   YA    +  A  +FD      + +  WN+MI  YA
Sbjct: 292 HAYVLKDADLAANSF--VASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYA 349

Query: 515 KHGDWSQCFKLYTQMK-QSDVRPDLITFLGLLTACVNAGLVE-----EGRIIFKEMKESY 568
           + G      +L+ +M+ ++ V P   T  G+L +C  +          G ++ + M ++ 
Sbjct: 350 QAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADN- 408

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
              P  ++  ++++L  R G MD AR +   +  + D   W  L++ C
Sbjct: 409 ---PFVQN--ALMDLYARLGDMDAARWIFATIEPR-DVVSWNTLITGC 450



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 45  PQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
           P   ++IH  Y + H L  ++ + S L+D YA  G L+LS+ VF+ +   N + +  ++ 
Sbjct: 509 PARGKEIHG-YAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIM 567

Query: 105 NLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
                G  ++ + ++ +M A     P E T+   + +CS           H+ +V  G +
Sbjct: 568 AYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACS-----------HSGMVDRGLE 616

Query: 164 SF 165
            F
Sbjct: 617 MF 618


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 221/661 (33%), Positives = 364/661 (55%), Gaps = 12/661 (1%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-SITSPNSLLYGTILKNLSK 108
           ++H   + L G +    + + L+  YA    LS ++++F+ S    +++L+ +IL + S 
Sbjct: 183 ELHCMLVKL-GFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYST 241

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            G+  +TL ++++M +    PA ++Y  V  + +C        G++IHA V+K       
Sbjct: 242 SGKSLETLQLFREMQMTG--PASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEV 299

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMR 225
            V +AL+  Y +C  G   E G I R   +     WNSLI   VQN   +++ + F  M 
Sbjct: 300 YVCNALIAMYARC--GKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMI 357

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G + D  +L +++ ++  L +L  G  +H   +   +  +L V   L+ MYSK     
Sbjct: 358 AAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTC 417

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
                F  M +KD + W  +I+ Y  +    E+L+L   + +     D     + + + S
Sbjct: 418 YMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACS 477

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +K++   K++H ++LR G    V + N L+D+Y +C ++  A ++F+S+K K VVSW+S
Sbjct: 478 VLKSMLIVKEIHCHILRKGLIDTV-IQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTS 536

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI     +    EA+ LF  M   G+  D V ++ IL A  ++ AL+  + +HGY ++ G
Sbjct: 537 MISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKG 596

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
                S+  A+   YA CG ++ A  +FD  +I+ K ++ + SMI+AY  HG      +L
Sbjct: 597 FCLEGSIAVAVVDMYACCGDLQSAKAVFD--RIERKGLLQYTSMINAYGMHGCGKASVEL 654

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M+  +V PD I+FL LL AC +AGL++EGR   K M+  Y  EP  EHY  +V++LG
Sbjct: 655 FNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLG 714

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RA  + EA E VK M  +P   VW  LL+AC+ HSE E+ E+ A++L+ +EP+N GN VL
Sbjct: 715 RANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVL 774

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           +SN++A  G+WN V K+R  ++  G++K PGCSWIE+   VH+F A D+SHP+   IY  
Sbjct: 775 VSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPETKEIYEK 834

Query: 706 L 706
           L
Sbjct: 835 L 835



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 272/496 (54%), Gaps = 11/496 (2%)

Query: 72  IDSYANLGLL-----SLSQQ-VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
           I++YA L  L     +LSQ+ VF+ +    +  +  ++      GE    L +Y+ M ++
Sbjct: 97  IEAYAYLLELCGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVE 156

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            +     ++P ++++C  L D  SG ++H  +VKLGF+S   + +ALV  Y K D     
Sbjct: 157 GVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAA 216

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
           ++     + K     WNS++S    +GKS ++ +LF+ M+M G   +S T+++ L +   
Sbjct: 217 KRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEG 276

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
               +LG+ +H   + S    ++ V  AL++MY++   + +A  +   M++ D V WN +
Sbjct: 277 FSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSL 336

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I  Y Q+   KE+L+    M+ +G + D  +  + +++   + N+  G ++HA V+++G 
Sbjct: 337 IKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGW 396

Query: 366 DYQVSVHNSLIDMYCECEDLNC-ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           D  + V N+LIDMY +C +L C   + F  +  K ++SW+++I GY  +D  +EAL+LF 
Sbjct: 397 DSNLLVGNTLIDMYSKC-NLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFR 455

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           ++  + +E+D + + +IL AC  + ++  VK +H + ++ GL      N  + + Y KC 
Sbjct: 456 DVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVDV-YGKCR 514

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  +F  E I  KD+++W SMIS+ A +G+ ++  +L+ +M ++ +  D +  L +
Sbjct: 515 NMGYASRVF--ESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCI 572

Query: 545 LTACVNAGLVEEGRII 560
           L+A  +   +++GR I
Sbjct: 573 LSAAASLSALKKGREI 588



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 127/252 (50%), Gaps = 6/252 (2%)

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           NG++  +  +  L+++  +   L+   K+FD ++ +T  +W+++I  YV++ +   AL +
Sbjct: 91  NGNNSPIEAYAYLLELCGKSRALS-QEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFI 149

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           +  M++EGV +D  +   +L AC  +  +     LH   +KLG NS   +  A+   YAK
Sbjct: 150 YRNMRVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAK 209

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              +  A  LFD  + +  D + WNS++S+Y+  G   +  +L+ +M+ +    +  T +
Sbjct: 210 TDHLSAAKRLFDASQ-EKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIV 268

Query: 543 GLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             LTAC      + G+ I    +K ++ +E    +  +++ +  R G M EA  +++ M 
Sbjct: 269 SALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCN--ALIAMYARCGKMLEAGRILRLMN 326

Query: 602 FKPDARVWGPLL 613
              D   W  L+
Sbjct: 327 -NADVVTWNSLI 337


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 227/764 (29%), Positives = 380/764 (49%), Gaps = 82/764 (10%)

Query: 17   KFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
            + LR     T  H  A   F +  L  +P   + +H  Y +  GL  ++ ++  L++ YA
Sbjct: 749  RLLRRSVVSTTRHTLAP-VFKMCLLSASPSASESLHG-YAVKIGLQWDVFVAGALVNIYA 806

Query: 77   NLGLLSLSQQVFNSITSPNSLLYGTI-------------------------------LKN 105
              GL+  ++ +F+ +   + +L+  +                               L+ 
Sbjct: 807  KFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRT 866

Query: 106  LSKFGEYEKTLLVYKQMALQS--MYPAEDTYPFVI----------------RSCSCLLDF 147
            LS+  + +K +L  KQ    +  ++  +D    VI                 +  C +D 
Sbjct: 867  LSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDM 926

Query: 148  IS-------------------------GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
            I+                         G++IH  V++ G D    VG+ L+  Y+K    
Sbjct: 927  INSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSV 986

Query: 183  FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
                    Q    DL S WN++IS    +G  E S  +F  +  +    D  T+ ++LR+
Sbjct: 987  SRARSVFGQMNEVDLIS-WNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRA 1045

Query: 243  TVELKS-LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
               L+    L   +H  A+ +    D  V+TAL+ +YSK   +E+A+ LF      D   
Sbjct: 1046 CSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLAS 1105

Query: 302  WNIMISAYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN ++  Y  SG FPK +L L + M  SG R+D  T + A  +   +  ++ GKQ+HA V
Sbjct: 1106 WNAIMHGYIVSGDFPK-ALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVV 1164

Query: 361  LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
            ++ G +  + V + ++DMY +C ++  AR++F  + +   V+W++MI G V + Q   AL
Sbjct: 1165 VKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHAL 1224

Query: 421  RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
              + +M+L  V+ D  T   ++ AC  + ALE  + +H   +KL       V T++   Y
Sbjct: 1225 FTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMY 1284

Query: 481  AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            AKCG IE A  LF  ++ +++ I +WN+MI   A+HG+  +  + +  MK   V PD +T
Sbjct: 1285 AKCGNIEDARGLF--KRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVT 1342

Query: 541  FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            F+G+L+AC ++GLV E    F  M+++YG EP  EHY+ +V+ L RAG ++EA +++  M
Sbjct: 1343 FIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSM 1402

Query: 601  PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660
            PF+  A ++  LL+AC++  + E  +  AEKL+++EP ++  YVLLSN+YAAA +W  VA
Sbjct: 1403 PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVA 1462

Query: 661  KMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
              R  +R   +KK PG SW+++   VH F A D+SH + D IY 
Sbjct: 1463 SARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYN 1506



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 163/641 (25%), Positives = 280/641 (43%), Gaps = 70/641 (10%)

Query: 23   ANQTRPHMTATHS----FSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSY 75
            AN   P     HS    FS+L        L   ++ HAR I+  G H +  +++NLI  Y
Sbjct: 643  ANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHAR-ILTSGHHPDRFVTNNLITMY 701

Query: 76   ANLGLLSLSQQVFNSITSPNSLL--YGTILKNLSKFGEYEKT-LLVYKQMALQSMYPAED 132
            A  G LS ++++F++    N  L  +  IL  L+   +       +++ +    +     
Sbjct: 702  AKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRH 761

Query: 133  TYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMI 190
            T   V + C       + E +H   VK+G  +D F  V  ALV  Y K   G   E  ++
Sbjct: 762  TLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVF--VAGALVNIYAKF--GLIREARVL 817

Query: 191  QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
               F  +  R    WN ++   V      ++  LF      G   D  TL  L       
Sbjct: 818  ---FDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL------- 867

Query: 247  KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
                  R+V C   + +  K        L MY    S              D +VWN  +
Sbjct: 868  -----SRVVKCKKNILEL-KQFKAYATKLFMYDDDGS--------------DVIVWNKAL 907

Query: 307  SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
            S + Q G   E+++  + M+ S    D  T +  ++ ++ +  +E GKQ+H  V+R+G D
Sbjct: 908  SRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLD 967

Query: 367  YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
              VSV N LI+MY +   ++ AR +F  +    ++SW++MI G         ++ +F  +
Sbjct: 968  QVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHL 1027

Query: 427  KLEGVEVDFVTIINILPACVNI-GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
              + +  D  T+ ++L AC ++ G       +H  +MK G+   S V+TA+   Y+K G 
Sbjct: 1028 LRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087

Query: 486  IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
            +E A  LF  +  D  D+ +WN+++  Y   GD+ +  +LY  M++S  R D IT     
Sbjct: 1088 MEEAEFLFVNQ--DGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITL---- 1141

Query: 546  TACVNAGLVEEGRIIFKEMKESY------GYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
               VNA     G +  K+ K+ +      G+       + ++++  + G M+ AR +  +
Sbjct: 1142 ---VNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSE 1198

Query: 600  MPFKPDARVWGPLLSACKMHSETELAELTAE--KLISMEPE 638
            +P  PD   W  ++S C  + + E A  T    +L  ++P+
Sbjct: 1199 IP-SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPD 1238


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 305/527 (57%), Gaps = 17/527 (3%)

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           + L + WN          KS  + E +  M+  G + ++ T   L  +   L ++E GR+
Sbjct: 99  RGLSTAWN----------KSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRM 148

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
            HC  +     +D  V+ +L++MY++   + DA+ +FD++S KD V WN MIS Y +   
Sbjct: 149 GHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRH 208

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E++ L   M+ +GF+ +  + ++ + +   + +++ G  +   V+ N       + ++
Sbjct: 209 AGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSA 268

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI MY +C DL  AR+IFDS+K K  V+W++MI GY  +  S EA++LF +M++     D
Sbjct: 269 LIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPD 328

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            +T+I IL AC +IGAL+  K +  Y+ + G      V TA+   YAKCG ++ A  +F 
Sbjct: 329 QITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVF- 387

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM--KQSDVRPDLITFLGLLTACVNAG 552
              +  K+ ++WN+MISA A HG   +   L+  M  +   V P+ ITF+G+L+ACV+AG
Sbjct: 388 -YGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LV+EGR +F  M  S+G  P  EHY+ MV+L  RAGH++EA + V  MP KPD  + G L
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           L AC+     +++E   + L+ +EP N+GNYV+ S +YA   +W+  A+MR  ++ +G+ 
Sbjct: 507 LGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVS 566

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
           KTPGCSWI+I   +HEF A D  H +   I+ IL +L   I + RRE
Sbjct: 567 KTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLL---IDDLRRE 610



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 230/454 (50%), Gaps = 12/454 (2%)

Query: 19  LRFPANQTRPHMTA-THSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           L+ P ++  P+  A +  F SLL  C + + L+QIHA+ ++ + +H+     ++ +   A
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQ-LLTNSIHK----PNSFLYKIA 71

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSK-FGEYEKTLLVYKQMALQSMYPAEDTYP 135
           +L   + +   F++I  P    +  +++ LS  + +    L  Y +M    + P   TYP
Sbjct: 72  DLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYP 131

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           F+  +CS LL   +G   H  V++ G D    V  +L+  Y +C    +  K   +   K
Sbjct: 132 FLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQK 191

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           DL S WNS+IS   +   + ++  LF+ M   G + +  +L+++L +  EL  L+LG  V
Sbjct: 192 DLVS-WNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWV 250

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
               V +    +  + +AL+ MY K   L  A+ +FD M  KD+V WN MI+ Y Q+G  
Sbjct: 251 EEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMS 310

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+++L   M  S    D  T I  +S+ +++  ++ GKQ+       G    V V  +L
Sbjct: 311 EEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTAL 370

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEV 433
           +DMY +C  L+ A ++F  +  K  VSW++MI     H Q+ EAL LF  M  EG  V  
Sbjct: 371 VDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSP 430

Query: 434 DFVTIINILPACVNIGALEHVKYL-HGYSMKLGL 466
           + +T + +L ACV+ G ++  + L H  S   GL
Sbjct: 431 NDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGL 464



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +++ + +  N  + S LI  Y   G L  ++++F+S+   + + +  ++   ++ G  E+
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + +++ M + S  P + T   ++ +C+ +     G+++     + GF     VG ALV+
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD 372

Query: 175 FYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            Y KC   D  F    GM ++     +  WN++IS    +G+++++  LFK M  EG   
Sbjct: 373 MYAKCGSLDNAFRVFYGMPKKN----EVSWNAMISALAFHGQAQEALALFKSMMNEGGTV 428

Query: 232 DSG--TLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                T + +L + V    ++ G R+ H ++        +   + ++ ++S+   LE+A 
Sbjct: 429 SPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAW 488

Query: 289 MLFDKMSDK-DRVVWNIMISA 308
                M +K D V+   ++ A
Sbjct: 489 DFVMTMPEKPDEVILGALLGA 509


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 216/672 (32%), Positives = 363/672 (54%), Gaps = 19/672 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +HAR I++ G   +  ++++LI+ YA     S +  VF+SI + + + +  ++   S+
Sbjct: 30  RALHAR-ILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQ 88

Query: 109 FGEYEKTLLV---YKQ--MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
              +  +L V   ++Q  MA +++ P   T   V  + S L D  +G + HA  VK    
Sbjct: 89  QQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACS 148

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
                  +L+  Y K    FE      +  F ++  R    W ++IS       ++++FE
Sbjct: 149 HDVFAASSLLNMYCKTGLVFE-----ARDLFDEMPERNAVSWATMISGYASQELADEAFE 203

Query: 220 LFKLMRME--GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
           LFKLMR E  G   +     ++L +      +  GR VH +A+ +     +SV  AL++M
Sbjct: 204 LFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTM 263

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K  SLEDA   F+   +K+ + W+ M++ + Q G   ++L+L   M +SG     FT 
Sbjct: 264 YVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTL 323

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           +  +++ S    I  G+QMH   L+ G + Q+ V ++L+DMY +C  +  ARK F+ ++ 
Sbjct: 324 VGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQ 383

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
             VV W+S+I GYV +     AL L+ +M+L GV  + +T+ ++L AC N+ AL+  K +
Sbjct: 384 PDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQM 443

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H   +K   +    + +A+   YAKCG ++    +F   ++ ++D+I+WN+MIS  +++G
Sbjct: 444 HAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIF--WRMPARDVISWNAMISGLSQNG 501

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
             ++  +L+ +M     +PD +TF+ LL+AC + GLV+ G + FK M + +   P+ EHY
Sbjct: 502 RGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHY 561

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
           A MV++L RAG + EA+E ++         +W  LL+A K H + +L     EKL+ +  
Sbjct: 562 ACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGS 621

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
             +  YVLLS+IY A GKW  V ++R  ++ RG+ K PGCSWIE+  L H F   D  HP
Sbjct: 622 LESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHP 681

Query: 698 QADAIYTILGIL 709
           Q D I   L +L
Sbjct: 682 QIDEIRLGLKLL 693



 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 229/473 (48%), Gaps = 12/473 (2%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G  +HA+++  G  S   + ++L+  Y KC    +          KD+ S WN LI+   
Sbjct: 29  GRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVS-WNCLINAFS 87

Query: 210 QNGKSEKSFELFKLMRM-----EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           Q      S  +  L R      +    ++ TL  +  +   L     GR  H +AV +  
Sbjct: 88  QQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTAC 147

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL--L 322
             D+   ++LL+MY K   + +A+ LFD+M +++ V W  MIS Y       E+ EL  L
Sbjct: 148 SHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKL 207

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
           M     G   + F   + +S+++    +  G+Q+H+  ++NG    VSV N+L+ MY +C
Sbjct: 208 MRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKC 267

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             L  A K F+    K  ++WS+M+ G+     S +AL+LF +M   G      T++ ++
Sbjct: 268 GSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVI 327

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC +  A+   + +HGYS+KLG      V +A+   YAKCG I  A + F  E I   D
Sbjct: 328 NACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGF--ECIQQPD 385

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           ++ W S+I+ Y ++GD+     LY +M+   V P+ +T   +L AC N   +++G+ +  
Sbjct: 386 VVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHA 445

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            + + Y +       +++  +  + G +D+   +   MP + D   W  ++S 
Sbjct: 446 GIIK-YNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPAR-DVISWNAMISG 496



 Score =  166 bits (420), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 201/399 (50%), Gaps = 14/399 (3%)

Query: 237 INLLRSTVEL---KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
           + +LR+ V     K L  GR +H   +V+       +  +L+++Y+K +    A ++FD 
Sbjct: 11  LQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDS 70

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELL-----MCMVRSGFRADLFTAIAAVSSISTMK 348
           +++KD V WN +I+A+ Q      SL ++     + M       +  T     ++ ST+ 
Sbjct: 71  INNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLS 130

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           +   G+Q HA  ++    + V   +SL++MYC+   +  AR +FD +  +  VSW++MI 
Sbjct: 131 DSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMIS 190

Query: 409 GYVTHDQSLEALRLFSEMKLE--GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           GY + + + EA  LF  M+ E  G   +     ++L A      +   + +H  +MK GL
Sbjct: 191 GYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGL 250

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
             + SV  A+   Y KCG +E A + F  E   +K+ ITW++M++ +A+ GD  +  KL+
Sbjct: 251 VCIVSVANALVTMYVKCGSLEDALKTF--ELSGNKNSITWSAMVTGFAQFGDSDKALKLF 308

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M QS   P   T +G++ AC +A  + EGR +        GYE      +++V++  +
Sbjct: 309 YDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHG-YSLKLGYELQLYVLSALVDMYAK 367

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            G + +AR+  + +  +PD  +W  +++    + + E A
Sbjct: 368 CGSIVDARKGFECIQ-QPDVVLWTSIITGYVQNGDYEGA 405


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/518 (33%), Positives = 304/518 (58%), Gaps = 5/518 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I    +N   + +  ++  M++     DS T  +LL++   L  L++GR VH    
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVF 146

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKES 318
              F  D+ V   L+++Y+K   L  A+ +F+ +   +R +  W  ++SAY Q+G P E+
Sbjct: 147 RLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEA 206

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           LE+   M +   + D    ++ +++ + ++++E G+ +HA+V++ G + +  +  SL  M
Sbjct: 207 LEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM 266

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  +  A+ +FD +K+  ++ W++MI GY  +  + +A+ LF EM  + V  D ++I
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISI 326

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            + + AC  +G+LE  +++  Y  +        +++A+   +AKCG +E A  +FD  + 
Sbjct: 327 TSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFD--RT 384

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             +D++ W++MI  Y  HG   +   LY  M++  V P+ +TFLGLL AC ++G+V EG 
Sbjct: 385 LDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGW 444

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  M + +   P Q+HYA +++LLGRAGH+D+A E++K MP +P   VWG LLSACK 
Sbjct: 445 WFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H   EL +  A++L S++P N G+YV LSN+YAAA  W+ VA++R  ++++GL K  GCS
Sbjct: 504 HRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           W+E+   +  F   D+SHP+ + I   +  +E  + EG
Sbjct: 564 WVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEG 601



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/486 (28%), Positives = 249/486 (51%), Gaps = 13/486 (2%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SL++   +   L+QIHAR ++L GL  +  L + LI + ++ G ++ ++QVF+ +  P  
Sbjct: 26  SLIDSSTHKAQLRQIHARLLVL-GLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQV 84

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
             +  I++  S+   ++  LL+Y +M L  + P   T+P ++++C  L     G  +HAQ
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQ 144

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK------SRWNSLISLAVQ 210
           V +LGF++   V + L+  Y KC        G  +  F+ L         W +++S   Q
Sbjct: 145 VFRLGFEADVFVQNGLIALYAKC-----RRLGCARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           NG+  ++ E+F  MR    + D   L+++L +   L+ LE GR +H   +      +  +
Sbjct: 200 NGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDL 259

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L +MY+K   +  AK+LFDKM   + ++WN MIS Y ++GF K++++L   M+    
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDV 319

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
           R D  +  +A+S+ + + ++E  + M   V R+     V + ++LIDM+ +C  + CAR 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARS 379

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD    + VV WS+MI GY  H Q+ EA+ L+  M+ +GV  + VT + +L AC + G 
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGM 439

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +    +         +N        I     + G ++ A E+     +    +  W +++
Sbjct: 440 VREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPV-QPGVTVWGALL 498

Query: 511 SAYAKH 516
           SA  KH
Sbjct: 499 SACKKH 504



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 146/288 (50%), Gaps = 6/288 (2%)

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
           SG  +D F A    S I +  +    +Q+HA +L  G  +   +   LI       D+  
Sbjct: 16  SGIHSDSFYA----SLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITF 71

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           AR++FD +    V  W+++I+GY  ++   +AL ++S+M+L  V  D  T  ++L AC  
Sbjct: 72  ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGG 131

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  L+  +++H    +LG  +   V   +   YAKC  +  A  +F+   +  + I++W 
Sbjct: 132 LSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWT 191

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +++SAYA++G+  +  ++++QM++ DV+PD +  + +L A      +E+GR I   + + 
Sbjct: 192 AIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK- 250

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G E   +   S+  +  + G +  A+ L   M   P+  +W  ++S 
Sbjct: 251 MGLETEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG 297


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/631 (31%), Positives = 333/631 (52%), Gaps = 28/631 (4%)

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG-TILKNLSKFGEYEKTLL 117
           HGLH   ++       Y   G  S +  +   +  P  + +  ++L++ +  G + + L 
Sbjct: 46  HGLHPLFMV-------YCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALA 98

Query: 118 VYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           VY  M A   +     T+PF  ++C+ L     G  +H + +  GF     V +AL+  Y
Sbjct: 99  VYSAMRAFDHL-----TFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMY 153

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           + C      + G  +  F  +++R    WN++I+  V+NG +E++ E+F  M  +G   D
Sbjct: 154 MSC-----GDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGID 208

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T++++L +  + K L  GR VH +         ++V  AL+ MY K  SLEDA+ +FD
Sbjct: 209 RATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFD 268

Query: 293 KMS-DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-ADLFTAIAAVSSISTMKNI 350
               DKD V W  MI AY  +    E++ L   M+ SG    +  T +  +S+ ++M + 
Sbjct: 269 HCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSG 328

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           +  K  HA  +R G    ++V  +LID Y  C  +   R   +    +   +W++ + GY
Sbjct: 329 KHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAE-TWNAALSGY 387

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
               +  +A+ LF  M  E V  D  T+ +ILPA      L+  K +H + + LG    +
Sbjct: 388 TVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRST 447

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            + T +   Y+K G ++ A  LF  + +  KD++ W ++I+ Y+ HG       LY +M 
Sbjct: 448 EIATGLIDVYSKAGDLDAAWALF--QWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMV 505

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           +S  +P+ +T   LL AC +AG+++EG  +FK+M+  +G  P+ EHY+ +V++LGRAG +
Sbjct: 506 ESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRI 565

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           +EA  L++DMPF+P   VWG LL AC +H   E  E+ A++L  ++PEN G+YVLL NIY
Sbjct: 566 EEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIY 625

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           AAA +W  V  +R  + +RGL K PG S +E
Sbjct: 626 AAADRWRDVQDVRRMMVERGLLKEPGSSLVE 656


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 219/676 (32%), Positives = 363/676 (53%), Gaps = 23/676 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI-------TSPNSLLYGT 101
           + +HAR I+  G   ++ +++  ++ YA    LS +  +F+SI        S NSL+   
Sbjct: 31  RTLHAR-ILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAF 89

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
              + S    +  +L   + M   ++ P   T   V  + S L D ++G++ H+  VK G
Sbjct: 90  SQNHSSSSSSFAISLF-RRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTG 148

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
                 VG +L+  Y K    F+  K +  R  +     W ++IS    +  ++K+ E+F
Sbjct: 149 CSGDVYVGSSLLNMYCKTGFVFDARK-LFDRMPERNTVSWATMISGYASSDIADKAVEVF 207

Query: 222 KLMRME---GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
           +LMR E     EF   ++++ L S V + +   GR VH +A+ +     +SV  AL++MY
Sbjct: 208 ELMRREEEIQNEFALTSVLSALTSDVFVYT---GRQVHSLAIKNGLLAIVSVANALVTMY 264

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           +K  SL+DA   F+   DK+ + W+ M++ Y Q G   ++L+L   M  SG     FT +
Sbjct: 265 AKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLV 324

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             +++ S +  +  GKQMH+   + G   Q+ V ++++DMY +C  L  ARK F+ V+  
Sbjct: 325 GVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQP 384

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VV W+S+I GYV +      L L+ +M++E V  + +T+ ++L AC ++ AL+  K +H
Sbjct: 385 DVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMH 444

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              +K G      + +A+   Y KCG ++    +F   ++ S+D+I+WN+MIS  +++G 
Sbjct: 445 ARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIF--WRMPSRDVISWNAMISGLSQNGH 502

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
            ++  +L+ +M    ++PD +TF+ LL+AC + GLV+ G   FK M + +   P  EHYA
Sbjct: 503 GNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYA 562

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
            MV++L RAG ++EA+E ++         +W  LL ACK H   EL     EKL+ +   
Sbjct: 563 CMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSP 622

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
            +  YVLLS+IY A G    V ++R  ++ RG+ K PGCSWIE+  LVH F   D  HPQ
Sbjct: 623 ESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQ 682

Query: 699 ADAIYTILGILELEIM 714
            D I      LELE++
Sbjct: 683 VDEIR-----LELELL 693



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/544 (27%), Positives = 264/544 (48%), Gaps = 61/544 (11%)

Query: 122 MALQSMYPAEDTYPFV-IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC- 179
           M+L  ++P +       +  C+   + + G  +HA+++K G  S   V +  +  Y K  
Sbjct: 1   MSLPKIFPPQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTN 60

Query: 180 ---------DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK---SFELF-KLMRM 226
                    D   +N+K  +          WNSLI+   QN  S     +  LF ++MR 
Sbjct: 61  HLSHALTLFDSINDNDKDDVS---------WNSLINAFSQNHSSSSSSFAISLFRRMMRA 111

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
                ++ TL  +  +   L  +  G+  H VAV +    D+ V ++LL+MY K   + D
Sbjct: 112 NNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFD 171

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ LFD+M +++ V W  MIS Y  S    +++E+   M R     + F   + +S++++
Sbjct: 172 ARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTS 231

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
              +  G+Q+H+  ++NG    VSV N+L+ MY +C  L+ A + F+    K  ++WS+M
Sbjct: 232 DVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAM 291

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           + GY     S +AL+LF++M   GV     T++ ++ AC ++ A+   K +H ++ KLG 
Sbjct: 292 VTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGF 351

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V +A+   YAKCG +  A + F  E +   D++ W S+I+ Y ++GD+     LY
Sbjct: 352 GLQLYVLSAVVDMYAKCGSLADARKGF--ECVQQPDVVLWTSIITGYVQNGDYEGGLNLY 409

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE--------------- 571
            +M+   V P+ +T   +L AC +   +++G+ +   + + YG++               
Sbjct: 410 GKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIK-YGFKLEVPIGSALSAMYTK 468

Query: 572 --------------PSQE--HYASMVNLLGRAGHMDEARELVKDM---PFKPDARVWGPL 612
                         PS++   + +M++ L + GH ++A EL + M     KPD   +  L
Sbjct: 469 CGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNL 528

Query: 613 LSAC 616
           LSAC
Sbjct: 529 LSAC 532



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 197/383 (51%), Gaps = 10/383 (2%)

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNI 304
           K++  GR +H   + +     + V    L++Y+K   L  A  LFD +  +DKD V WN 
Sbjct: 25  KNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNS 84

Query: 305 MISAYYQSGFPKE---SLELLMCMVRS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
           +I+A+ Q+        ++ L   M+R+     +  T     S+ S + ++  GKQ H+  
Sbjct: 85  LINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVA 144

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           ++ G    V V +SL++MYC+   +  ARK+FD +  +  VSW++MI GY + D + +A+
Sbjct: 145 VKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAV 204

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
            +F  M+ E    +   + ++L A  +   +   + +H  ++K GL ++ SV  A+   Y
Sbjct: 205 EVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMY 264

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           AKCG ++ A   F  E    K+ ITW++M++ YA+ GD  +  KL+ +M  S V P   T
Sbjct: 265 AKCGSLDDAVRTF--EFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFT 322

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            +G++ AC +   V EG+ +        G+       +++V++  + G + +AR+  + +
Sbjct: 323 LVGVINACSDLCAVVEGKQM-HSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECV 381

Query: 601 PFKPDARVWGPLLSACKMHSETE 623
             +PD  +W  +++    + + E
Sbjct: 382 Q-QPDVVLWTSIITGYVQNGDYE 403



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 131/286 (45%), Gaps = 14/286 (4%)

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV--KTKTVVSWSS 405
           KNI  G+ +HA +L+ GS   + V N+ +++Y +   L+ A  +FDS+    K  VSW+S
Sbjct: 25  KNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNS 84

Query: 406 MIKGYVTHDQSLE---ALRLFSE-MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           +I  +  +  S     A+ LF   M+   V  +  T+  +  A  N+  +   K  H  +
Sbjct: 85  LINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVA 144

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K G +    V +++   Y K G +  A +LFD  ++  ++ ++W +MIS YA      +
Sbjct: 145 VKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFD--RMPERNTVSWATMISGYASSDIADK 202

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             +++  M++ +   +      +L+A  +   V  GR +   +    G         ++V
Sbjct: 203 AVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQV-HSLAIKNGLLAIVSVANALV 261

Query: 582 NLLGRAGHMDEARELVKDMPFKPDAR--VWGPLLSACKMHSETELA 625
            +  + G +D+A   V+   F  D     W  +++      +++ A
Sbjct: 262 TMYAKCGSLDDA---VRTFEFSGDKNSITWSAMVTGYAQGGDSDKA 304


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 207/657 (31%), Positives = 348/657 (52%), Gaps = 12/657 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLI-DSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           HL +  AR +     H+N I S NLI  +Y++ G L  +Q +F S    N+  +  +++ 
Sbjct: 58  HLHR--ARAMFDQMPHKN-IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRA 114

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            +  G     L +++ M  + + P   T   V+    C +       +H   +K G D+ 
Sbjct: 115 HAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTH 169

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V + L++ Y K        +  ++   KD  + +N+++    + G   ++ +LF  MR
Sbjct: 170 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVT-YNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G      T  ++L     +  L LG  VH + + S    ++ VN +LL  YSK   L+
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLD 288

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           D + LFD+M ++D V +N++I+AY  +      L L   M + GF   +      +S   
Sbjct: 289 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 348

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++ ++  GKQ+HA ++  G   +  + N+LIDMY +C  L+ A+  F +   K+ +SW++
Sbjct: 349 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 408

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I GYV + Q  EAL+LFS+M+  G+  D  T  +I+ A  ++  +   + LH Y ++ G
Sbjct: 409 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 468

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             S     + +   YAKCGC++ A   FDE  +  ++ I+WN++ISAYA +G+     K+
Sbjct: 469 YKSSVFSGSVLVDMYAKCGCLDEALRTFDE--MPERNSISWNAVISAYAHYGEAKNAIKM 526

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M      PD +TFL +L AC + GL +E    F  MK  Y   P +EHYA +++ LG
Sbjct: 527 FEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLG 586

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           R G   + ++++ +MPFK D  +W  +L +C++H   ELA + A+KL  MEP +A  YV+
Sbjct: 587 RVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 646

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           LSNIYA AG+W   A ++  +RDRG++K  G SW+EI + ++ F + D + P  D I
Sbjct: 647 LSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 703


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/631 (31%), Positives = 332/631 (52%), Gaps = 28/631 (4%)

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG-TILKNLSKFGEYEKTLL 117
           HGLH   ++       Y   G  S +  +   +  P  + +  ++L++ +  G + + L 
Sbjct: 46  HGLHPLFMV-------YCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALA 98

Query: 118 VYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           VY  M A   +     T+PF  ++C+ L     G  +H + +  GF     V +AL+  Y
Sbjct: 99  VYSAMRAFDHL-----TFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMY 153

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           + C      + G  +  F  +++R    WN++I+  V+NG +E++ E+F  M  +G   D
Sbjct: 154 MSC-----GDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGID 208

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T++++L +  + K L  GR VH +         ++V  AL+ MY K  SLEDA+ +FD
Sbjct: 209 RATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFD 268

Query: 293 KMS-DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-ADLFTAIAAVSSISTMKNI 350
               DKD V W  MI AY  +    E++ L   M+ SG    +  T +  +S+ ++M + 
Sbjct: 269 HCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSG 328

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           +  K  HA  +R G    ++V  +LID Y  C  +   R   +    +   +W++ + GY
Sbjct: 329 KHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAE-TWNAALSGY 387

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
               +  +A+ LF  M  E V  D  T+ +ILPA      L+  K +H + + LG    +
Sbjct: 388 TVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRST 447

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            + T +   Y+K G ++ A  LF  + +  KD++ W ++I+ Y  HG       LY +M 
Sbjct: 448 EIATGLIDVYSKAGDLDAAWALF--QWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMV 505

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           +S  +P+ +T   LL AC +AG+++EG  +FK+M+  +G  P+ EHY+ +V++LGRAG +
Sbjct: 506 ESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRI 565

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           +EA  L++DMPF+P   VWG LL AC +H   E  E+ A++L  ++PEN G+YVLL NIY
Sbjct: 566 EEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIY 625

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           AAA +W  V  +R  + +RGL K PG S +E
Sbjct: 626 AAADRWRDVQDVRRMMVERGLLKEPGSSLVE 656


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 215/662 (32%), Positives = 366/662 (55%), Gaps = 11/662 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  +L + + +I  Y   G L  + ++F+ +   N + + ++++  S+ G + +    +
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299

Query: 120 KQM--ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           + +  +   + P   T   ++  CS   +   G  IH   VKLG      V +AL++ Y 
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359

Query: 178 KCDGGFENEKGMIQRKFKDLKS--RWNSLISLAVQNGKSEKSFELFKLMRMEGA--EFDS 233
           KC  G  +E  ++ RK ++ KS   WNS+I    + G   ++F+L + M ME    E + 
Sbjct: 360 KC--GCLSEAAILFRKIEN-KSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNE 416

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T++NLL + +E   L   R +H  ++   F     +N A ++ Y+K  SL  A+ +F  
Sbjct: 417 VTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFG 476

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M+ K    WN +I  + Q+G P ++L+    M R G   D F+ ++ + +   +  +++G
Sbjct: 477 MNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG 536

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           K++H  VLRNG +    V  SL+ +Y  C      R  F+ +  K  V W++M+ GY  +
Sbjct: 537 KEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQN 596

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
           +   EAL LF +M  +G+E D + I +IL AC  + AL   K +H +++K  L   + V 
Sbjct: 597 ELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVA 656

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            ++   YAK G +  +  +F+  +++ K++ +WN MI+ +  HG  ++  +L+  MK+SD
Sbjct: 657 CSLMDMYAKSGFLGHSQRIFN--RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSD 714

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            +PD  TFLG+L AC +AGLV EG     +M+  Y  EP  EHYA ++++LGRAG ++EA
Sbjct: 715 KQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEA 774

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
              + +MP +PDA++W  LLS+   + + E+ E  AEKL+++E   A +Y+LLSN+YA A
Sbjct: 775 LNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATA 834

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           GKW+ V  +R  ++D  L+K  GCSWIE+   V+ F A + S+P +D I  +   LE +I
Sbjct: 835 GKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQI 894

Query: 714 ME 715
           +E
Sbjct: 895 VE 896



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 201/366 (54%), Gaps = 7/366 (1%)

Query: 200 RWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           +WN+L+S  V+N   +++   F +L+ +   + D+ T   L+++      + LG+ VH +
Sbjct: 176 QWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGM 235

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
           AV      DL V  A++++Y K   L++A  LFDKM +++ + WN +I  + ++GF  E+
Sbjct: 236 AVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEA 295

Query: 319 LELLMCMVRS--GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
                 ++ S  G   D+ T +  +   S   N++ G  +H   ++ G  +++ V N+LI
Sbjct: 296 YRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALI 355

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVD 434
           DMY +C  L+ A  +F  ++ K+VVSW+SMI  Y       E   L  +M +E   +EV+
Sbjct: 356 DMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVN 415

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VTI+N+LPAC+    L  ++ LHGYS++        +N A   +YAKCG +  A  +F 
Sbjct: 416 EVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF- 474

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
              +++K + +WN++I  +A++GD  +    Y +M +  + PD  + + LL AC   GL+
Sbjct: 475 -FGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLL 533

Query: 555 EEGRII 560
           + G+ I
Sbjct: 534 QYGKEI 539



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 10/201 (4%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q+ ++IH  +++ +GL  N  ++ +L+  Y +       +  F  +   NS+ +  +L  
Sbjct: 534 QYGKEIHG-FVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSG 592

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S+     + L +++QM    + P E     ++ +CS L     G+++H   +K      
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMED 652

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
           + V  +L++ Y K   GF    G  QR F  L  +    WN +I+    +G+  K+ ELF
Sbjct: 653 NFVACSLMDMYAK--SGF---LGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELF 707

Query: 222 KLMRMEGAEFDSGTLINLLRS 242
           + M+    + D  T + +L++
Sbjct: 708 EDMKRSDKQPDRFTFLGVLQA 728


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 207/700 (29%), Positives = 372/700 (53%), Gaps = 20/700 (2%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           ++ H    L  C++ + ++QIH R  I      N+ L + ++ +Y   G ++ ++  F++
Sbjct: 26  SSGHYRDALRQCQDLESVRQIHDR--ISGAASANVFLGNEIVRAYGKCGSVASARAAFDA 83

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           I   N   +G++L   ++ G Y   L +YK+M LQ   P    Y  V+ +C+ +     G
Sbjct: 84  IARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIKALEEG 140

Query: 151 EKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           + IH+++        D +  ++L+  Y KC G  E+ K + +R      S WN++I+   
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKC-GSLEDAKRLFERMSGRSVSSWNAMIAAYA 199

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           Q+G  E++  L++ M +E +     T  ++L +   L  L+ GR +H +        DLS
Sbjct: 200 QSGHFEEAIRLYEDMDVEPS---VRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLS 256

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           +  ALL+MY++   L+DA  +F ++  +D V W+ MI+A+ ++    E++E    M   G
Sbjct: 257 LQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEG 316

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN--SLIDMYCECEDLNC 387
            R + +T  + + + +++ ++  G+ +H  +L NG  Y++++ N  +L+D+Y     L+ 
Sbjct: 317 VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNG--YKITLVNGTALVDLYTSYGSLDE 374

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN--ILPAC 445
           AR +FD ++ +    W+ +I GY         L L+ EMK    +V    II   ++ AC
Sbjct: 375 ARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK-NTTKVPATKIIYSCVISAC 433

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            ++GA    +  H      G+ S   + T++   Y++ G +E A ++FD  K+ S+D + 
Sbjct: 434 ASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFD--KMSSRDTLA 491

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W ++I+ YAKHG+      LY +M+     P  +TF+ +L AC +AGL E+G+ +F  ++
Sbjct: 492 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQ 551

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             Y   P+  HY+ +++LL RAG + +A EL+  MP +P+   W  LL A ++H + + A
Sbjct: 552 SDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRA 611

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
              A ++  ++P +  +YVLLSN++A  G   G+A +R  +  RG+KK  G SWIE+   
Sbjct: 612 THAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQ 671

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME-GRRESSEEL 724
           +HEF   D SHP+   I+  L  L  +I E G    SEE+
Sbjct: 672 IHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEV 711


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 312/564 (55%), Gaps = 42/564 (7%)

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTV 244
           ++R F  + +R    WNSLIS     G   +S + + LM   G    +   L  +L    
Sbjct: 94  MERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILAS 153

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK------------------------ 280
           +   + LG  VH   V   F   + V + L+ MYSK                        
Sbjct: 154 KQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNT 213

Query: 281 -------LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
                   + +ED++ LF  M +KD + W  MI+ + Q+G  +E+++L   M       D
Sbjct: 214 LIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMD 273

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCARKI 391
            +T  + +++   +  ++ GKQ+HA ++R  +DYQ  + V ++L+DMYC+C+ +  A  +
Sbjct: 274 QYTFGSVLTACGGVMALQEGKQVHAYIIR--TDYQDNIFVGSALVDMYCKCKSIKSAETV 331

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K VVSW++M+ GY  +  S EA+++F +M+  G+E D  T+ +++ +C N+ +L
Sbjct: 332 FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASL 391

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E     H  ++  GL S  +V+ A+   Y KCG IE +  LF E  +   D ++W +++S
Sbjct: 392 EEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE--MSYVDEVSWTALVS 449

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+ G  ++  +L+  M     +PD +TF+G+L+AC  AGLV++G  IF+ M + +   
Sbjct: 450 GYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRII 509

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P ++HY  M++L  RAG ++EAR+ +  MPF PDA  W  LLS+C+ H   E+ +  AE 
Sbjct: 510 PIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAES 569

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L+ +EP N  +Y+LLS+IYAA GKW  VA +R  +RD+GL+K PGCSWI+    VH F A
Sbjct: 570 LLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSA 629

Query: 692 ADQSHPQADAIYTILGILELEIME 715
            DQS+P +D IY+ L  L  ++++
Sbjct: 630 DDQSNPFSDQIYSELEKLNYKMVQ 653



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/557 (24%), Positives = 259/557 (46%), Gaps = 73/557 (13%)

Query: 32  ATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
           + H   LL  C + +   +IH  +II    +  + L +NL+ +YA    ++ +++VF+ +
Sbjct: 15  SNHYCELLKHCRDTK---KIHC-HIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQM 70

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ------SMYPAEDTYPFVIRSC---- 141
              N   + T+L + SK     +   V+  M  +      S+  A     F+++S     
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYN 130

Query: 142 ---------------SCLLDFIS-------GEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
                          S +L   S       G ++H  VVK GF S+  VG  LV+ Y K 
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190

Query: 180 DGGF--------ENEKGMI------------------QRKFKDLKSR----WNSLISLAV 209
              F          EK ++                  ++ F D++ +    W ++I+   
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           QNG   ++ +LF+ MR+E  E D  T  ++L +   + +L+ G+ VH   + +D+  ++ 
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIF 310

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V +AL+ MY K  S++ A+ +F KM+ K+ V W  M+  Y Q+G+ +E++++   M  +G
Sbjct: 311 VGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG 370

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D FT  + +SS + + ++E G Q H   L +G    ++V N+L+ +Y +C  +  + 
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F  +     VSW++++ GY    ++ E LRLF  M   G + D VT I +L AC   G
Sbjct: 431 RLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAG 490

Query: 450 ALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            ++    +    +K   +  +    T +   +++ G +E A +  ++    S D I W S
Sbjct: 491 LVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPF-SPDAIGWAS 549

Query: 509 MISAYAKH-----GDWS 520
           ++S+   H     G W+
Sbjct: 550 LLSSCRFHRNMEIGKWA 566



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 117/280 (41%), Gaps = 71/280 (25%)

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +K+    K++H ++++   + ++ + N+L+  Y + + +  AR++FD +  + + SW+++
Sbjct: 22  LKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTL 81

Query: 407 IKGYV----------------THD------------------QSLEALRLF---SEMKLE 429
           +  Y                 T D                  QS++A  L        L 
Sbjct: 82  LSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLN 141

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            + +  + I+     CV++G       +HG+ +K G  S   V + +   Y+K G +  A
Sbjct: 142 RIALSTMLILASKQGCVHLGL-----QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCA 196

Query: 490 GELFDE--EK---------------------------IDSKDIITWNSMISAYAKHGDWS 520
            + FDE  EK                           +  KD I+W +MI+ + ++G   
Sbjct: 197 RQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDR 256

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +   L+ +M+  ++  D  TF  +LTAC     ++EG+ +
Sbjct: 257 EAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQV 296


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/465 (37%), Positives = 280/465 (60%), Gaps = 4/465 (0%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           LL+    L  +E GRIVH   V S F  + L +   +++MY+K   L+DA+ +FD+M  K
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +I+ + Q+  P+++L L   M+R GF+ + FT  + + +  +   ++ G Q+H
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  L+ G    V V ++L+DMY  C  ++ A+  FD + TK+ VSW+++I G+    +  
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
            AL L  +M+ +  +    T  ++L AC +IGALE  K++H + +K GL  ++ +   + 
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLL 332

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G I+ A  +FD  ++   D+++WN+M++  A+HG   +    + QM +  + P+
Sbjct: 333 DMYAKAGSIDDAKRVFD--RLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPN 390

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            I+FL +LTAC ++GL++EG   F+ MK+ Y  EP   HY + V+LLGR G +D A   +
Sbjct: 391 EISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFI 449

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++MP +P A VWG LL AC+MH   EL    AE+   ++P ++G  +LLSNIYA+AG+W 
Sbjct: 450 REMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWR 509

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            VAK+R  +++ G+KK P CSW+EI   VH F A D++HP+   I
Sbjct: 510 DVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEI 554



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 192/393 (48%), Gaps = 5/393 (1%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFE 184
           S+ P  + Y  +++ C+ L     G  +HA +V   F D+   + + +V  Y KC G  +
Sbjct: 82  SLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC-GCLD 140

Query: 185 NEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           + + M  +   KD+ + W +LI+   QN +   +  LF  M   G + +  TL +LL+++
Sbjct: 141 DARRMFDEMPTKDMVT-WTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKAS 199

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
                L+ G  +H   +   +   + V +AL+ MY++   ++ A++ FD M  K  V WN
Sbjct: 200 GSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWN 259

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            +IS + + G  + +L LL  M R  F+   FT  + +S+ +++  +E GK +HA+++++
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKS 319

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G      + N+L+DMY +   ++ A+++FD +    VVSW++M+ G   H    E L  F
Sbjct: 320 GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRF 379

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M   G+E + ++ + +L AC + G L+   Y      K  +               + 
Sbjct: 380 EQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRV 439

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           G ++ A     E  I+    + W +++ A   H
Sbjct: 440 GLLDRAERFIREMPIEPTAAV-WGALLGACRMH 471



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 12/315 (3%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C     ++Q   +HA  +  H L  +L+L + +++ YA  G L  ++++F+ + + 
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   S+       LL++ QM      P   T   ++++         G ++H
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           A  +K G+ S   VG ALV+ Y +C           Q  F  + ++    WN+LIS   +
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARC-----GHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G+ E +  L   M+ +  +    T  ++L +   + +LE G+ VH   + S       +
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFI 327

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
              LL MY+K  S++DAK +FD++   D V WN M++   Q G  KE+L+    M+R G 
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI 387

Query: 331 RADLFTAIAAVSSIS 345
             +  + +  +++ S
Sbjct: 388 EPNEISFLCVLTACS 402



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           +++  + PD   +  LL  C   G VE+GRI+   + +S+  +        +VN+  + G
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM--EPENAGNYVLL 646
            +D+AR +  +MP K D   W  L++    ++    A L   +++ +  +P    N+  L
Sbjct: 138 CLDDARRMFDEMPTK-DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQP----NHFTL 192

Query: 647 SNIYAAAGKWNGV 659
           S++  A+G  +G+
Sbjct: 193 SSLLKASGSEHGL 205


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 210/656 (32%), Positives = 354/656 (53%), Gaps = 24/656 (3%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           F LL+ C N   L+Q H   +  +GL  ++ +++ L+  Y + G    ++ VF+ I  P+
Sbjct: 60  FLLLSKCTNIDSLRQAHG-VLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPD 118

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             L+  IL+      E  + +  Y  +        +  +   +++C+ + D  +G+KIH 
Sbjct: 119 FYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHC 178

Query: 156 QVVKLGFDSFDDVG-DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           Q+VK+   SFD+V    L++ Y KC      E     + F+D+  R    W S+I+  V+
Sbjct: 179 QIVKV--PSFDNVVLTGLLDMYAKC-----GEIKSSYKVFEDITLRNVVCWTSMIAGYVK 231

Query: 211 NGKSEKSFELFKLMR---MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
           N   E+   LF  MR   + G E+  GTL+    +  +L++L  G+  H   + S     
Sbjct: 232 NDLYEEGLVLFNRMRENSVLGNEYTYGTLV---MACTKLRALHQGKWFHGCLIKSGIELS 288

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
             + T+LL MY K   + +A+ +F++ S  D V+W  MI  Y  +G   E+L L   M  
Sbjct: 289 SCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSG 348

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G + +  T  + +S    + N+E G+ +H   ++ G  +  +V N+L+ MY +C     
Sbjct: 349 VGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTNVANALVHMYAKCYQNRD 407

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A+ +F+    K +V+W+S+I G+  +    EAL LF  M  E V  + VT+ ++  AC +
Sbjct: 408 AKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACAS 467

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVN--TAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
           +G+L     LH YS+KLG  + SSV+  TA+   YAKCG  E A  +FD   I+ K+ IT
Sbjct: 468 LGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFD--TIEEKNTIT 525

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W++MI  Y K GD     +L+ +M +   +P+  TF  +L+AC + G+V EG+  F  M 
Sbjct: 526 WSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMY 585

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           + Y + PS +HY  MV++L RAG +++A ++++ MP +PD R +G  L  C MHS  +L 
Sbjct: 586 KDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLG 645

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           E+  +K++ + P++A  YVL+SN+YA+ G+W+   ++R  ++ RGL K  G S +E
Sbjct: 646 EIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAGHSIME 701


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/517 (37%), Positives = 298/517 (57%), Gaps = 12/517 (2%)

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           D+K   N LI    + G  +++  L              T  +L+ S  +  SL  G  V
Sbjct: 45  DIKGNNNQLIQSLCKGGNLKQAIHLLCC----EPNPTQRTFEHLICSCAQQNSLSDGLDV 100

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   V S F +D  + T L++MY +L S++ A+ +FD+  ++   VWN +  A    G  
Sbjct: 101 HRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCG 160

Query: 316 KESLELLMCMVRSGFRADLFTAI----AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           KE L+L + M   G  +D FT      A V S  ++  ++ GK++HA++LR+G +  + V
Sbjct: 161 KELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHV 220

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +L+D+Y +   ++ A  +F ++ TK  VSWS+MI  +  ++  ++AL LF  M LE  
Sbjct: 221 MTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAH 280

Query: 432 E--VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           +   + VT++N+L AC  + ALE  K +HGY ++ GL+S+  V  A+   Y +CG I M 
Sbjct: 281 DSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMG 340

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             +FD  K  ++D+++WNS+IS Y  HG   +  +++  M      P  I+F+ +L AC 
Sbjct: 341 QRVFDNMK--NRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACS 398

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGLVEEG+I+F+ M   Y   P  EHYA MV+LLGRA  +DEA +L++DM F+P   VW
Sbjct: 399 HAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVW 458

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LL +C++H   ELAE  +  L  +EP NAGNYVLL++IYA A  W+    +   L  R
Sbjct: 459 GSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEAR 518

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           GL+K PGCSWIE+ + V+ F + D+ +PQ + I+ +L
Sbjct: 519 GLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALL 555



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 196/417 (47%), Gaps = 31/417 (7%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSL--SQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           I+ H   Q+ +  ++ + S   +  +SL  S  + N I   N+ L    +++L K G  +
Sbjct: 9   IVRHAPSQSHLCYNSHVSSRVPVSFVSLNPSANLMNDIKGNNNQL----IQSLCKGGNLK 64

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
           + +     +      P + T+  +I SC+       G  +H ++V  GFD    +   L+
Sbjct: 65  QAI----HLLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLI 120

Query: 174 EFYIKCDGGFENEKGMIQRK---FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
             Y         E G I R    F + + R    WN+L       G  ++  +L+  M  
Sbjct: 121 NMYY--------ELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNW 172

Query: 227 EGAEFDSGTLINLLRSTV----ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            G   D  T   +L++ V     +  L+ G+ +H   +   +  ++ V T LL +Y+K  
Sbjct: 173 IGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFG 232

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA--DLFTAIAA 340
           S+  A  +F  M  K+ V W+ MI+ + ++  P ++LEL   M+     +  +  T +  
Sbjct: 233 SVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNV 292

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + + +  +E GK +H  +LR G D  + V N+LI MY  C ++   +++FD++K + V
Sbjct: 293 LQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDV 352

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           VSW+S+I  Y  H    +A+++F  M  +G    +++ I +L AC + G +E  K L
Sbjct: 353 VSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKIL 409



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 172/349 (49%), Gaps = 12/349 (3%)

Query: 54  RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           R ++  G  Q+  L++ LI+ Y  LG +  +++VF+        ++  + + L+  G  +
Sbjct: 102 RRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGK 161

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSC----LLDFISGEKIHAQVVKLGFDSFDDVG 169
           + L +Y QM    +     TY FV+++C      +     G++IHA +++ G+++   V 
Sbjct: 162 ELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVM 221

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
             L++ Y K                K+  S W+++I+   +N    K+ ELF+LM +E  
Sbjct: 222 TTLLDVYAKFGSVSYANSVFCAMPTKNFVS-WSAMIACFAKNEMPMKALELFQLMMLEAH 280

Query: 230 EF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           +   +S T++N+L++   L +LE G+++H   +       L V  AL++MY +   +   
Sbjct: 281 DSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMG 340

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD M ++D V WN +IS Y   GF K+++++   M+  G      + I  + + S  
Sbjct: 341 QRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHA 400

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             +E GK +  ++L   S Y+  +H  +    C  + L  A ++ +++K
Sbjct: 401 GLVEEGKILFESML---SKYR--IHPGMEHYACMVDLLGRANRLDEAIK 444


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/677 (29%), Positives = 344/677 (50%), Gaps = 33/677 (4%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNL----ILSSNLIDSYANLGLLSLSQQVFNSIT 92
           S+L+ C   +   Q   R +   G  Q       + + LI  Y   G   L+++VF  + 
Sbjct: 148 SVLSSCTKAELFAQ--GRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMP 205

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             +++ + T++   ++    E  L ++++M    + P   T   ++ +C+ L D   G +
Sbjct: 206 HRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQ 265

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H+ + K G  S   +  +L++ Y+KC G  E    +     +     WN ++    Q  
Sbjct: 266 LHSYLFKAGMSSDYIMEGSLLDLYVKC-GDVETALVIFNLGNRTNVVLWNLILVAFGQIN 324

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              KSFELF  M+  G   +  T   +LR+      ++LG  +H ++V + F  D+ V+ 
Sbjct: 325 DLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSG 384

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+ MYSK   LE A+ + + + +KD V W  MI+ Y Q  + K++L     M + G   
Sbjct: 385 VLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWP 444

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D     +A+S  + +K +  G Q+HA V  +G    VS+ N+L+++Y  C  +  A   F
Sbjct: 445 DNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + ++ K  ++W+ ++ G+       EAL++F  M   GV+ +  T ++ L A  N+  ++
Sbjct: 505 EEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIK 564

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +H   +K G +  + V  A+   Y KCG  E A   F E  +  ++ ++WN++I++
Sbjct: 565 QGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE--MSERNEVSWNTIITS 622

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
            ++HG   +    + QMK+                        EG   FK M + YG  P
Sbjct: 623 CSQHGRGLEALDFFDQMKK------------------------EGLSYFKSMSDKYGIRP 658

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             +HYA ++++ GRAG +D A++ V++MP   DA VW  LLSACK+H   E+ EL A+ L
Sbjct: 659 RPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVHKNIEVGELAAKHL 718

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + +EP ++ +YVLLSN YA  GKW    ++R  +RDRG++K PG SWIE+  +VH F+  
Sbjct: 719 LELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVG 778

Query: 693 DQSHPQADAIYTILGIL 709
           D+ HP A+ IY  L ++
Sbjct: 779 DRLHPLAEQIYNFLAVI 795



 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/580 (28%), Positives = 302/580 (52%), Gaps = 14/580 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q + +IHA+  I  GL ++ I+ + LID Y+  GL+  +++VF  +++ +++ +  +L  
Sbjct: 59  QVVPEIHAK-AITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++ G  E+ L +Y+QM    + P       V+ SC+    F  G  +HAQ  K GF S 
Sbjct: 118 YAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSE 177

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             VG+AL+  Y++C G F     + +R F D+  R    +N+LIS   Q    E + E+F
Sbjct: 178 TFVGNALITLYLRC-GSFR----LAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIF 232

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M+  G   D  T+ +LL +   L  L+ G  +H     +    D  +  +LL +Y K 
Sbjct: 233 EEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKC 292

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             +E A ++F+  +  + V+WN+++ A+ Q     +S EL   M  +G R + FT    +
Sbjct: 293 GDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCIL 352

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + +    I+ G+Q+H+  ++ G +  + V   LIDMY +   L  AR++ + +K K VV
Sbjct: 353 RTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVV 412

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW+SMI GYV H+   +AL  F EM+  G+  D + + + +  C  I A+     +H   
Sbjct: 413 SWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARV 472

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
              G +   S+  A+   YA+CG I  A   F+E  I+ KD ITWN ++S +A+ G   +
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEE--IEHKDEITWNGLVSGFAQSGLHEE 530

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             K++ +M QS V+ ++ TF+  L+A  N   +++G+ I   + ++ G+    E   +++
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALI 589

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +L G+ G  ++A+    +M  + +   W  ++++C  H  
Sbjct: 590 SLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGR 628



 Score =  166 bits (421), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 200/402 (49%), Gaps = 9/402 (2%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H  A+     KD  V   L+ +YSK   +  A+ +F+++S +D V W  M+S Y Q+G 
Sbjct: 64  IHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGL 123

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            +E+L L   M R+G     +   + +SS +  +    G+ +HA   + G   +  V N+
Sbjct: 124 GEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNA 183

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI +Y  C     A ++F  +  +  V+++++I G+        AL +F EM+  G+  D
Sbjct: 184 LITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPD 243

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VTI ++L AC ++G L+    LH Y  K G++S   +  ++   Y KCG +E A  +F+
Sbjct: 244 CVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFN 303

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
               +  +++ WN ++ A+ +  D ++ F+L+ QM+ + +RP+  T+  +L  C   G +
Sbjct: 304 LG--NRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEI 361

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           + G  I   +    G+E        ++++  + G +++AR ++ +M  + D   W  +++
Sbjct: 362 DLGEQI-HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIA 419

Query: 615 ACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
               H   +  LA     +   + P+N G   L S I   AG
Sbjct: 420 GYVQHEYCKDALAAFKEMQKCGIWPDNIG---LASAISGCAG 458


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 223/684 (32%), Positives = 354/684 (51%), Gaps = 20/684 (2%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLS 107
            ++ H R I   G  +++++ + +I  YA  G  S +  VF  I     ++ + T+L    
Sbjct: 355  RKFHGR-IWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASE 413

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC--LLDFISGEKIHAQVVKLGFDSF 165
                + K +  +  M L  + P + ++  ++ +CS    LDF  G KIH+ ++    D  
Sbjct: 414  DRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDF--GRKIHSLILTRRRDYV 471

Query: 166  DD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFEL 220
            +  V   LV  Y KC    E E   +  K   L SR    WN ++    QN +S+++F  
Sbjct: 472  ESSVATMLVSMYGKCGSIAEAE---LVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 221  FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
               M   G   D+ +  ++L S    +  ++ R+     ++    +   + TAL+SM+ +
Sbjct: 529  LMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMC----ILESGYRSACLETALISMHGR 584

Query: 281  LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
               LE A+ +FD+M   D V W  M+SA  ++   KE   L   M   G   D FT    
Sbjct: 585  CRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATT 644

Query: 341  VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
            + +      +  GK +HA V   G +  ++V N+L++MY  C D   A   F+++K + +
Sbjct: 645  LDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 401  VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            VSW+ M   Y     + EA+ LF  M+LEGV+ D +T    L        +   K  HG 
Sbjct: 705  VSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGL 764

Query: 461  SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            + + GL+S  SV T +   YAKCG ++ A  LF         ++  N++I A A+HG   
Sbjct: 765  AAESGLDSDVSVATGLVKLYAKCGKLDEAISLF--RGACQWTVVLLNAIIGALAQHGFSE 822

Query: 521  QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
            +  K++ +M+Q  VRPD+ T + +++AC +AG+VEEG   F  MKE +G  P+ EHYA  
Sbjct: 823  EAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACF 882

Query: 581  VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
            V+LLGRAG ++ A ++++ MPF+ +  VW  LL  CK+  + EL E  A++++ ++P N+
Sbjct: 883  VDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNS 942

Query: 641  GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
              +V+LSNIY A GKW      R  L D+ +K  PG SW+EIGK VHEF A D+SHPQ D
Sbjct: 943  AAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTD 1002

Query: 701  AIYTILGILELEIMEGRRESSEEL 724
             IY +L  LEL +     E+ + L
Sbjct: 1003 EIYVVLDKLELLMRRAGYEADKGL 1026



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 152/586 (25%), Positives = 288/586 (49%), Gaps = 34/586 (5%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQN----LILSSNLIDSYANLGLLSLSQQVFN 89
           ++LN C N + L   + IHA    L GL +      ++ + +I+ YA  G    +  VF 
Sbjct: 132 AMLNACANSRDLAIGRSIHAMIWEL-GLERESTTATLVGNAMINMYAKCGSPEDAIAVFL 190

Query: 90  SITSPNSLLYGTILKNLSKFGE-YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           +I   + + +  +    ++    Y   L ++++M LQ + P   T+   + +C+ L D  
Sbjct: 191 TIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD-- 248

Query: 149 SGEKIHAQV--VKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNS 203
            G  +H+ +    LGFD     G+AL+  Y KC   +G +   K M  R+  DL S WN+
Sbjct: 249 -GTWLHSLLHEAGLGFDPL--AGNALINMYGKCGDWEGAYGVFKAMASRQELDLVS-WNA 304

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG--RIVHCVAVV 261
           +IS +V+ G+   +  +F+ +R+EG   +S TLI +L + +    ++ G  R  H     
Sbjct: 305 MISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNA-LAASGVDFGAARKFHGRIWE 363

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLE 320
           S + +D+ V  A++SMY+K      A  +F ++  K D + WN M+ A        + + 
Sbjct: 364 SGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVN 423

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY-QVSVHNSLIDMY 379
               M+ +G   +  + IA +++ S  + +++G+++H+ +L    DY + SV   L+ MY
Sbjct: 424 TFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMY 483

Query: 380 CECEDLNCARKIFDS--VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            +C  +  A  +F    + ++++V+W+ M+  Y  +D+S EA     EM   GV  D ++
Sbjct: 484 GKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALS 543

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
             ++L +C      +  + L    ++ G  S + + TA+   + +C  +E A  +FDE  
Sbjct: 544 FTSVLSSCY---CSQEAQVLRMCILESGYRS-ACLETALISMHGRCRELEQARSVFDE-- 597

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +D  D+++W +M+SA A++ D+ +   L+ +M+   V PD  T    L  C+++  +  G
Sbjct: 598 MDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLG 657

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +II   + E  G E       +++N+    G   EA    + M  +
Sbjct: 658 KIIHACVTE-IGLEADIAVENALLNMYSNCGDWREALSFFETMKAR 702



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 274/570 (48%), Gaps = 26/570 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL Q+L L + LI+ Y   G L  +  +F+ +   N + +  ++   ++ G + +   ++
Sbjct: 55  GLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALF 114

Query: 120 KQMALQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFD----SFDDVGDALV 173
           + M L+S   A ++Y  V  + +C+   D   G  IHA + +LG +    +   VG+A++
Sbjct: 115 RTMLLES-SAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMI 173

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK-SEKSFELFKLMRMEGAEFD 232
             Y KC    +     +    KD+ S W ++     Q  +    +  +F+ M ++    +
Sbjct: 174 NMYAKCGSPEDAIAVFLTIPEKDVVS-WTAMAGAYAQERRFYPDALRIFREMLLQPLAPN 232

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T I  L +   L+    G  +H +   +    D     AL++MY K    E A  +F 
Sbjct: 233 VITFITALGACTSLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFK 289

Query: 293 KMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            M+ +   D V WN MISA  ++G   +++ +   +   G R +  T I  +++++    
Sbjct: 290 AMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA-SG 348

Query: 350 IEWG--KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSM 406
           +++G  ++ H  +  +G    V V N++I MY +C   + A  +F  ++ K  V+SW++M
Sbjct: 349 VDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTM 408

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           +          + +  F  M L G++ + V+ I IL AC N  AL+  + +H   +    
Sbjct: 409 LGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRR 468

Query: 467 NSL-SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           + + SSV T +   Y KCG I  A  +F E  + S+ ++TWN M+ AYA++    + F  
Sbjct: 469 DYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
             +M Q  V PD ++F  +L++C  +   +E +++   + ES GY  +    A ++++ G
Sbjct: 529 LMEMLQGGVLPDALSFTSVLSSCYCS---QEAQVLRMCILES-GYRSACLETA-LISMHG 583

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           R   +++AR +  +M    D   W  ++SA
Sbjct: 584 RCRELEQARSVFDEMD-HGDVVSWTAMVSA 612



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 239/497 (48%), Gaps = 24/497 (4%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +++SC    D   G++ H  +   G +    +G+ L+  Y++C G  E    +  + 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRC-GSLEEAHAIFSKM 86

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELG 252
            +     W +LIS   Q+G   ++F LF+ M +E  A  +S TL+ +L +    + L +G
Sbjct: 87  EERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 253 RIVHC----VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           R +H     + +  +      V  A+++MY+K  S EDA  +F  + +KD V W  M  A
Sbjct: 147 RSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGA 206

Query: 309 YYQS-GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           Y Q   F  ++L +   M+      ++ T I A+ + +++++  W   +H+ +   G  +
Sbjct: 207 YAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGTW---LHSLLHEAGLGF 263

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKT---VVSWSSMIKGYVTHDQSLEALRLFS 424
                N+LI+MY +C D   A  +F ++ ++    +VSW++MI   V   +  +A+ +F 
Sbjct: 264 DPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFR 323

Query: 425 EMKLEGVEVDFVTIINILPAC----VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
            ++LEG+  + VT+I IL A     V+ GA    +  HG   + G      V  AI   Y
Sbjct: 324 RLRLEGMRPNSVTLITILNALAASGVDFGA---ARKFHGRIWESGYLRDVVVGNAIISMY 380

Query: 481 AKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           AKCG    A  +F   +I  K D+I+WN+M+ A      + +    +  M  + + P+ +
Sbjct: 381 AKCGFFSAAWTVF--RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKV 438

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           +F+ +L AC N+  ++ GR I   +               +V++ G+ G + EA  + K+
Sbjct: 439 SFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKE 498

Query: 600 MPFKPDARV-WGPLLSA 615
           MP    + V W  +L A
Sbjct: 499 MPLPSRSLVTWNVMLGA 515



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 161/348 (46%), Gaps = 21/348 (6%)

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           VR    ADL    A + S     ++  GK+ H  +   G +  + + N LI+MY  C  L
Sbjct: 17  VRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSL 76

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV-DFVTIINILPA 444
             A  IF  ++ + VVSW+++I           A  LF  M LE     +  T++ +L A
Sbjct: 77  EEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSS----VNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           C N   L   + +H    +LGL   S+    V  A+   YAKCG  E A  +F    I  
Sbjct: 137 CANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVF--LTIPE 194

Query: 501 KDIITWNSMISAYAKHGD-WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           KD+++W +M  AYA+    +    +++ +M    + P++ITF+  L AC +   + +G  
Sbjct: 195 KDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTW 251

Query: 560 IFKEMKES-YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP--DARVWGPLLSA- 615
           +   + E+  G++P   +  +++N+ G+ G  + A  + K M  +   D   W  ++SA 
Sbjct: 252 LHSLLHEAGLGFDPLAGN--ALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISAS 309

Query: 616 --CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
                H +  +A     +L  M P N+   + + N  AA+G   G A+
Sbjct: 310 VEAGRHGDA-MAIFRRLRLEGMRP-NSVTLITILNALAASGVDFGAAR 355


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 211/651 (32%), Positives = 356/651 (54%), Gaps = 13/651 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           +A+ GL+  + Q+F+ +   ++ ++  ++K  +  G Y + L +Y +M    +     TY
Sbjct: 70  FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTY 129

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           PFVI+S + +     G+KIHA V+KL F S   V ++L+  Y+K    ++ EK   +   
Sbjct: 130 PFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPE 189

Query: 195 KDLKSRWNSLIS--LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           +D+ S WNS+IS  LA+++G   +S  LFK M   G + D  + ++ L +   + S  +G
Sbjct: 190 RDIVS-WNSMISGYLALEDGF--RSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMG 246

Query: 253 RIVHCVAVVSDF-CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           + +HC AV S     D+ V T++L MYSK   +  A+ +F  +  ++ V WN++I  Y +
Sbjct: 247 KELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYAR 306

Query: 312 SGFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           +    ++      M  ++G + D+ T I  + + + ++    G+ +H   +R G    + 
Sbjct: 307 NSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAILE----GRTIHGYAMRRGFLPHIV 362

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           +  +LIDMY E   L  A  IFD +  K ++SW+S+I  YV + ++  AL LF ++    
Sbjct: 363 LDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSS 422

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           +  D  TI +ILPA     +L   + +H Y +K    S + +  ++   YA CG +E A 
Sbjct: 423 LLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDAR 482

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           + F+   +  KD+++WNS+I AYA HG       L+++M  S V P+  TF  LL AC  
Sbjct: 483 KCFNHVLL--KDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSI 540

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           +G+V+EG   F+ MK  YG +P  EHY  M++L+GR G+   A+  +++MPF P AR+WG
Sbjct: 541 SGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWG 600

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LL+A + H++  +AE  AE++  ME +N G YVLL N+YA A +W  V +++  +  +G
Sbjct: 601 SLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKG 660

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESS 721
           + +T   S +E     H     D+SH + + IY +L I+   I E   E S
Sbjct: 661 ISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEVLDIVSRMIGEEEEEDS 711



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 185/349 (53%), Gaps = 16/349 (4%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T  L  ++    +EDA  LFD+M+  D  VWN+MI  +   G   E+L+L   MV SG +
Sbjct: 64  TRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVK 123

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC---A 388
           AD FT    + S++ + ++E GK++HA V++      V V NSLI +Y +   L C   A
Sbjct: 124 ADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMK---LGCSWDA 180

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
            K+F+ +  + +VSW+SMI GY+  +    +L LF EM   G + D  + ++ L AC ++
Sbjct: 181 EKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHV 240

Query: 449 GALEHVKYLHGYSMKLGLNSLSS-VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            +    K LH ++++  + +    V T+I   Y+K G +  A  +F  + I  ++I+ WN
Sbjct: 241 YSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIF--KCIIQRNIVAWN 298

Query: 508 SMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            +I  YA++   +  F  + +M +Q+ ++PD+IT + LL AC     + EGR I      
Sbjct: 299 VLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA----ILEGRTIHGYAMR 354

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
             G+ P      +++++ G  G +  A E++ D   + +   W  +++A
Sbjct: 355 R-GFLPHIVLDTALIDMYGEWGQLKSA-EVIFDRIAEKNLISWNSIIAA 401



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 204/403 (50%), Gaps = 16/403 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IHA  I L  +  ++ + ++LI  Y  LG    +++VF  +   + + + +++     
Sbjct: 146 KKIHAMVIKLRFV-SDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLA 204

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD- 167
             +  ++L+++K+M      P   +    + +CS +     G+++H   V+   ++ D  
Sbjct: 205 LEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVM 264

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF-K 222
           V  ++++ Y K       E    +R FK +  R    WN LI    +N +   +F  F K
Sbjct: 265 VMTSILDMYSK-----YGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQK 319

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
           +    G + D  TLINLL +   L+    GR +H  A+   F   + ++TAL+ MY +  
Sbjct: 320 MSEQNGLQPDVITLINLLPACAILE----GRTIHGYAMRRGFLPHIVLDTALIDMYGEWG 375

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L+ A+++FD++++K+ + WN +I+AY Q+G    +LEL   +  S    D  T  + + 
Sbjct: 376 QLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILP 435

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +   ++  G+Q+HA ++++       + NSL+ MY  C DL  ARK F+ V  K VVS
Sbjct: 436 AYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVS 495

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           W+S+I  Y  H     ++ LFSEM    V+ +  T  ++L AC
Sbjct: 496 WNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAAC 538


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 307/549 (55%), Gaps = 36/549 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN  I   + +    ++  L+K +++ +G + D+ T   L ++   L  + +G  +    
Sbjct: 74  WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +   F  D+ V+ A++ +      L+ A+ +FDK   +D V WN MI+ Y + G+  E+L
Sbjct: 134 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 193

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
                M   G + D  T I  VSS + +++++ G++ H  +  NG    V + N+L+DMY
Sbjct: 194 NFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMY 253

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSM-------------------------------IK 408
            +C +L  ARK+FDS+  KT+VSW++M                               I 
Sbjct: 254 MKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIG 313

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GYV  ++  EAL LF+EM+   +  D VT+++ L AC  +GAL+   ++H Y  K  L+ 
Sbjct: 314 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 373

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             ++ TA+   YAKCG I  A ++F E  +  ++ +TW ++IS  A HG+       +++
Sbjct: 374 NVALGTALIDMYAKCGKITKAIQVFQE--LPGRNSLTWTAIISGLALHGNAHGAIAYFSE 431

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M  + V PD +TFLGLL+AC + GLVEEGR  F +M   +   P  +HY+ MV+LLGRAG
Sbjct: 432 MIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAG 491

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            ++EA EL+K MP + DA VWG L  AC++H    + E  A KL+ M+P ++G YVLL+N
Sbjct: 492 LLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLAN 551

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +Y  A  W    K R  +R RG++KTPGCS IE+  +V+EF   D+SHPQ++ IY  L  
Sbjct: 552 MYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQ 611

Query: 709 L--ELEIME 715
           L  +LE++E
Sbjct: 612 LTRQLELVE 620



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 242/519 (46%), Gaps = 40/519 (7%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSITS 93
            SLL  C++   L+QI ++ ++L GL ++   SS LI   + +    L     +  +  +
Sbjct: 10  LSLLEKCKSISQLKQIQSQ-MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRN 68

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQ-MALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           PN+  +   ++         + +++YK+ +      P   TYP + ++C+ L     G +
Sbjct: 69  PNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSE 128

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSRWNSLISLAVQN 211
           I   V+ LGFDS   V +A++   + C G  +  + M  +   +DL S WNS+I+  V+ 
Sbjct: 129 ILGHVLHLGFDSDIFVSNAVIHLLVSC-GDLDGARKMFDKSCVRDLVS-WNSMINGYVRR 186

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G + ++   ++ M++EG + D  T+I ++ S  +L+ L+LGR  HC    +     + + 
Sbjct: 187 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 246

Query: 272 TALLSMYSKLASLEDAKMLFDKMS-------------------------------DKDRV 300
            AL+ MY K  +LE A+ LFD M+                               DKD V
Sbjct: 247 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVV 306

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN MI  Y  +   KE+L L   M       D  T ++ +S+ S +  ++ G  +H  +
Sbjct: 307 PWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYI 366

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
            ++     V++  +LIDMY +C  +  A ++F  +  +  ++W+++I G   H  +  A+
Sbjct: 367 EKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAI 426

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFIS 479
             FSEM    V  D VT + +L AC + G +E   KY    S K  L+      + +   
Sbjct: 427 AYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDL 486

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             + G +E A EL     I++ D + W ++  A   HG+
Sbjct: 487 LGRAGLLEEAEELIKSMPIEA-DAVVWGALFFACRIHGN 524



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE-MKLEGVEVDFVTII 439
           E  DL+    I  + +     SW+  I+G++  +   EA+ L+   ++ +G + D  T  
Sbjct: 52  EWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYP 111

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            +  AC  +  +     + G+ + LG +S   V+ A+      CG ++ A ++FD+  + 
Sbjct: 112 LLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCV- 170

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D+++WNSMI+ Y + G   +    Y +MK   ++PD +T +G++++C     ++ GR 
Sbjct: 171 -RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 229

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
               ++E+ G + +     +++++  + G+++ AR+L   M  K
Sbjct: 230 SHCYIEEN-GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNK 272


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/511 (36%), Positives = 295/511 (57%), Gaps = 9/511 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LI+     G +  +  LF  MR  G   D  T   ++  T     + L R +H +A 
Sbjct: 108 FNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVI--TACCNHVGLIRQLHSLAF 165

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKES 318
            S F   +SV  +LL+ YSK   LE+A+M+F+ M +  +D V WN MI AY Q     ++
Sbjct: 166 SSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKA 225

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           L L   MV  GF  D+FT  + +++ S ++++  G Q HA  ++ G +    V + LIDM
Sbjct: 226 LALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDM 285

Query: 379 YCEC-EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ-SLEALRLFSEMKLEGVEVDFV 436
           Y +C   ++ +RK+F+ +    +V W++MI GY  + + S+EAL  F +M+  G   D  
Sbjct: 286 YAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDC 345

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDE 495
           + +  + AC N+ +    K  H  +MK  + S   SVN A+   Y+KCG ++ A +LF  
Sbjct: 346 SFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLF-- 403

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           +++   + +T NS+I+ YA+HG  ++   L+ QM  + + P  IT + +L+AC + G VE
Sbjct: 404 QRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVE 463

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG+  F  MK+ +G EP  EHY+ M++LLGRAG + EA  L+  MPF P +  W  LL A
Sbjct: 464 EGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGA 523

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C+ +   ELAE  A + + +EP NA  Y++L+++Y+AA KW   A++R  +RDRG++K P
Sbjct: 524 CRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKP 583

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           GCSWIE+ K VH F A D SHP+   I+  L
Sbjct: 584 GCSWIELNKRVHVFVAEDNSHPRIKEIHMYL 614



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 171/337 (50%), Gaps = 14/337 (4%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL++ Y+K + +  A  LFD++   D V +N +I+AY   G    +L L   M   G  
Sbjct: 78  NALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLV 137

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT    +++     ++   +Q+H+    +G D  VSV NSL+  Y +   L  A  +
Sbjct: 138 MDGFTFSGVITACCN--HVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMV 195

Query: 392 FDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           F+ +  + +  VSW+SMI  Y  H + L+AL L+ +M   G E+D  T+ ++L     + 
Sbjct: 196 FNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVE 255

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC-IEMAGELFDEEKIDSKDIITWNS 508
            L      H  ++K G N    V + +   YAKCG  +  + ++F+E  I   D++ WN+
Sbjct: 256 DLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE--ICGSDLVVWNT 313

Query: 509 MISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKE 566
           MIS Y+++ + S +  + + QM+++   PD  +F+  ++AC N     +G+      MK 
Sbjct: 314 MISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKS 373

Query: 567 SYGYEPSQEHYA--SMVNLLGRAGHMDEARELVKDMP 601
                PS +     ++V +  + G++ +AR+L + MP
Sbjct: 374 EI---PSNQISVNNALVTMYSKCGNLQDARKLFQRMP 407



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 189/389 (48%), Gaps = 23/389 (5%)

Query: 33  THSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI- 91
           T S  +   C +   ++Q+H+      G    + + ++L+  Y+  G+L  ++ VFN + 
Sbjct: 142 TFSGVITACCNHVGLIRQLHS-LAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMG 200

Query: 92  ------TSPNSLL--YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
                  S NS++  YG   + L       K L +Y+ M  +       T   V+ + SC
Sbjct: 201 EEVRDEVSWNSMIVAYGQHKRGL-------KALALYRDMVHRGFEIDMFTLASVLTTFSC 253

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNS 203
           + D   G + HA+ +K GF+    VG  L++ Y KC  G    + + +         WN+
Sbjct: 254 VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNT 313

Query: 204 LISLAVQNGK-SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +IS   QN + S ++ E F+ M+  G   D  + +  + +   L S   G+  H +A+ S
Sbjct: 314 MISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKS 373

Query: 263 DFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           +   + +SVN AL++MYSK  +L+DA+ LF +M   + V  N +I+ Y Q G   ESL L
Sbjct: 374 EIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNL 433

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMY 379
              M+ +       T ++ +S+ +    +E GK+ + N++++  G + +   ++ +ID+ 
Sbjct: 434 FEQMLAASIAPTSITLVSILSACAHTGRVEEGKK-YFNMMKDIFGIEPEAEHYSCMIDLL 492

Query: 380 CECEDLNCARKIFDSVK-TKTVVSWSSMI 407
                L+ A ++ D++  +    +W++++
Sbjct: 493 GRAGKLSEAERLIDTMPFSPGSAAWAALL 521



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 9/258 (3%)

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N+LI  Y +   ++ A  +FD +    +VS++++I  Y     +L AL LF EM+  G+ 
Sbjct: 78  NALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLV 137

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           +D  T   ++ AC N   L  ++ LH  +   G +S  SV  ++   Y+K G +E A  +
Sbjct: 138 MDGFTFSGVITACCNHVGL--IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMV 195

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT--ACVN 550
           F+    + +D ++WNSMI AY +H    +   LY  M       D+ T   +LT  +CV 
Sbjct: 196 FNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVE 255

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH-MDEARELVKDMPFKPDARVW 609
                 G + F       G+  ++   + ++++  + G  M E+R++ +++    D  VW
Sbjct: 256 D---LSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI-CGSDLVVW 311

Query: 610 GPLLSACKMHSETELAEL 627
             ++S    + E  +  L
Sbjct: 312 NTMISGYSQNKELSVEAL 329


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 310/553 (56%), Gaps = 42/553 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCV 258
           +N++++   ++G+      L  L  M   +F  ++ +  + L +    K L  G  VH +
Sbjct: 117 YNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGL 176

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
              S    D+ + TAL+ MY+K     DA+ +FD M +++ V WN +I+ Y Q+G   E+
Sbjct: 177 VARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEA 236

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN-VLRNGSDYQVSVHNSLID 377
           L L + M+ +GF  D  T  + +S+ + +     G+Q+HA+ V R+     + ++N+L+D
Sbjct: 237 LVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVD 296

Query: 378 MYCECEDLNCARKIFDSVKTKTVVS-------------------------------WSSM 406
           MY +C     AR IFDS+ +++VVS                               W+ +
Sbjct: 297 MYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVL 356

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGY 460
           I  Y  + +  EA+RLF ++K + +     T  N+L AC NI  L+     HV  L  G+
Sbjct: 357 IAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGF 416

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
               G  S   V  ++   Y K G I+   ++F  E++ ++D ++WN+MI  YA++G   
Sbjct: 417 RFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVF--ERMAARDNVSWNAMIVGYAQNGRAK 474

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
               L+ +M  S+  PD +T +G+L+AC ++GLV+EGR  F  M E +G  PS++HY  M
Sbjct: 475 DALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCM 534

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGRAGH+ EA EL+KDMP +PD+ +W  LL AC++H   EL E TA +L  ++PEN+
Sbjct: 535 VDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENS 594

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           G YVLLSN+YA  GKW  V ++R  ++DRG+ K PGCSWIEIG  ++ F A D  HP  +
Sbjct: 595 GPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRN 654

Query: 701 AIYTILGILELEI 713
            I++ L I+++E+
Sbjct: 655 EIHSTLRIIQMEM 667



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 141/584 (24%), Positives = 251/584 (42%), Gaps = 86/584 (14%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFN 89
            A  +F L  L      L ++     +  G+      S N L+ +YA LG    ++ +F 
Sbjct: 48  VAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFE 107

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDF 147
           +I  P+   Y  ++  L++ G       +    A+ +     + Y F   + +C+   D 
Sbjct: 108 AIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDL 167

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
            +GE++H  V +        +G ALV+ Y KC+   +      +R F  +  R    WNS
Sbjct: 168 RTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVD-----ARRVFDAMPERNVVSWNS 222

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           LI+   QNG   ++  LF  M   G   D  TL +++ +   L +   GR VH   V  D
Sbjct: 223 LITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRD 282

Query: 264 FCK-DLSVNTALLSMYSKL-------------------------------ASLEDAKMLF 291
             + D+ +N AL+ MY+K                                A++EDA+++F
Sbjct: 283 RLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVF 342

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
            +M +K+ + WN++I+AY Q+G  +E++ L + + R       +T    +++   +  ++
Sbjct: 343 SQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQ 402

Query: 352 WGKQMHANVLRN------GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            G+Q H +VL+       G +  V V NSL+DMY +   ++   K+F+ +  +  VSW++
Sbjct: 403 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 462

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKL 464
           MI GY  + ++ +AL LF  M       D VT+I +L AC + G + E  ++ H  +   
Sbjct: 463 MIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDH 522

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA------------ 512
           G+       T +     + G ++ A EL  +   +  D + W S++ A            
Sbjct: 523 GITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTE-PDSVLWASLLGACRLHKNVELGER 581

Query: 513 ----------------------YAKHGDWSQCFKLYTQMKQSDV 534
                                 YA+ G W+  F++   MK   V
Sbjct: 582 TAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGV 625



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 190/379 (50%), Gaps = 38/379 (10%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA--YYQSGFPKESLELLMCMVRSG 329
            ALLS Y++L   ++A+ LF+ + D D+  +N +++A   +  G   ++L  L  M    
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADD 146

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           F  + ++  +A+S+ +  K++  G+Q+H  V R+     V +  +L+DMY +CE    AR
Sbjct: 147 FVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDAR 206

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++FD++  + VVSW+S+I  Y  +    EAL LF EM   G   D VT+ +++ AC  + 
Sbjct: 207 RVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLA 266

Query: 450 ALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE------------- 495
           A    + +H + +K   L     +N A+   YAKCG    A  +FD              
Sbjct: 267 AEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSIL 326

Query: 496 ----------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
                            ++  K++I WN +I+AYA++G+  +  +L+ Q+K+  + P   
Sbjct: 327 AGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHY 386

Query: 540 TFLGLLTACVNAGLVEEGRIIFKE-MKESYGYE--PSQEHYA--SMVNLLGRAGHMDEAR 594
           T+  +L AC N  +++ G+      +KE + ++  P  + +   S+V++  + G +D+  
Sbjct: 387 TYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 446

Query: 595 ELVKDMPFKPDARVWGPLL 613
           ++ + M  + D   W  ++
Sbjct: 447 KVFERMAAR-DNVSWNAMI 464


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 297/552 (53%), Gaps = 72/552 (13%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D+  L + ++S   L++L+ G+ +H  A  S F  D  V ++L  MY K   + DA+ LF
Sbjct: 103 DAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLF 162

Query: 292 DKMSDKDRVVWNIMISAYYQ-----------------------------------SGFPK 316
           D+M D+D VVW+ MI+ Y +                                   +GF  
Sbjct: 163 DRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYD 222

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E++ +   M+  GF  D  T    + ++  ++++  G Q+H  V++ G      V ++++
Sbjct: 223 EAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAML 282

Query: 377 DMYCECEDLNCARKIFDSVKTK-----------------------------------TVV 401
           DMY +C  +    ++FD V+                                      VV
Sbjct: 283 DMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVV 342

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           +W+S+I     + + LEAL LF +M+  GVE + VTI +++PAC NI AL H K +H +S
Sbjct: 343 TWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFS 402

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           ++ G+     V +A+   YAKCG I++A   FD  K+ + ++++WN+++  YA HG   +
Sbjct: 403 LRRGIFDDVYVGSALIDMYAKCGRIQLARRCFD--KMSALNLVSWNAVMKGYAMHGKAKE 460

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             +++  M QS  +PDL+TF  +L+AC   GL EEG   +  M E +G EP  EHYA +V
Sbjct: 461 TMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLV 520

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
            LL R G ++EA  ++K+MPF+PDA VWG LLS+C++H+   L E+ AEKL  +EP N G
Sbjct: 521 TLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPG 580

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
           NY+LLSNIYA+ G W+   ++R  ++ +GL+K PG SWIE+G  VH   A DQSHPQ   
Sbjct: 581 NYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKD 640

Query: 702 IYTILGILELEI 713
           I   L  L +++
Sbjct: 641 ILEKLDKLNMQM 652



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/545 (22%), Positives = 230/545 (42%), Gaps = 75/545 (13%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYAN---LGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +Q HA  + L+ L  +  L+++L+  YAN   L    LS  + + +  P    + +++  
Sbjct: 20  RQAHALILRLN-LFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHA 78

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++   +   L  +  +    + P     P  I+SC+ L     G+++HA     GF + 
Sbjct: 79  FARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTD 138

Query: 166 DDVGDALVEFYIKCDGGFENEK-----------------------GMIQRK---FKDLKS 199
             V  +L   Y+KCD   +  K                       G+++     F +++S
Sbjct: 139 SIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRS 198

Query: 200 --------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
                    WN +++    NG  +++  +F++M ++G   D  T+  +L +   L+ + +
Sbjct: 199 GGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVV 258

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--------------- 296
           G  VH   +      D  V +A+L MY K   +++   +FD++ +               
Sbjct: 259 GAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSR 318

Query: 297 --------------KDR------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
                         KD+      V W  +I++  Q+G   E+LEL   M   G   +  T
Sbjct: 319 NGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVT 378

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + + +   +  +  GK++H   LR G    V V ++LIDMY +C  +  AR+ FD + 
Sbjct: 379 IPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMS 438

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-K 455
              +VSW++++KGY  H ++ E + +F  M   G + D VT   +L AC   G  E   +
Sbjct: 439 ALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWR 498

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
             +  S + G+         +    ++ G +E A  +  E   +  D   W +++S+   
Sbjct: 499 CYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFE-PDACVWGALLSSCRV 557

Query: 516 HGDWS 520
           H + S
Sbjct: 558 HNNLS 562



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCAR-- 389
           +F A++   S ST  ++   +Q HA +LR    SD Q++   SL+  Y     L+  +  
Sbjct: 1   MFHALSQCLSSST-ASLSQARQAHALILRLNLFSDTQLTT--SLLSFYANALSLSTPQLS 57

Query: 390 -KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             +   +   T+ S+SS+I  +         L  FS +    +  D   + + + +C ++
Sbjct: 58  LTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASL 117

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            AL+  + LH ++   G  + S V +++   Y KC  I  A +LFD  ++  +D++ W++
Sbjct: 118 RALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFD--RMPDRDVVVWSA 175

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           MI+ Y++ G   +  +L+ +M+   V P+L+++ G+L    N G  +E   +F+ M
Sbjct: 176 MIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 210/639 (32%), Positives = 337/639 (52%), Gaps = 66/639 (10%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           TY  ++ SC  L     G+++HA  +K GF   + V   L++ Y +     +     ++ 
Sbjct: 64  TYASLLESCRTL---NLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKM 120

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             ++L S W +++S+ V +G  E++  LF+ ++++    +      +L+    L+ LELG
Sbjct: 121 PQRNLYS-WTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELG 179

Query: 253 RIVHCVAVVSDFCKDL----------------SVNTALLSMYSKLASLEDAKMLFDKMS- 295
           R +H   VV   C D+                S NT ++  Y +  ++E AK LFD+M  
Sbjct: 180 RQLH--GVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVG-YCENGNVEKAKELFDQMEL 236

Query: 296 -DKDRVVWNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
             KD + WN MIS Y  +    E+L +    ++  G  AD FT  + +++ + M ++  G
Sbjct: 237 VGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRG 296

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           K++HA  +  G  +   V  +L++MY +CEDL  A+  FD V  +   +W+ +I GY   
Sbjct: 297 KEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACC 356

Query: 414 DQSLE------------------------------------ALRLFSEMKLEGVEVDFVT 437
           +Q LE                                    ALRLF+EM+   +  D  T
Sbjct: 357 NQ-LENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYT 415

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           +  ILPAC  +  +   K +H +S++ G      +  A+   YAKCG I+ A ++++  +
Sbjct: 416 VGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYN--R 473

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           I + ++++ N+M++AYA HG   +   L+  M  +  RPD +TFL +L++CV+AG VE G
Sbjct: 474 ISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETG 533

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
              F  M   Y   PS +HY  +V+LL RAG +DEA ELVK +P KPD+ +WG LL  C 
Sbjct: 534 HEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCV 592

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +    EL E+ AE LI +EP N GNYVLL+N+YA AG+W+ + + R  ++DRG+ K+PGC
Sbjct: 593 IWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGC 652

Query: 678 SWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           SWIE  + +H F + D+SH + + IYT L  L   +  G
Sbjct: 653 SWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMRTG 691



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 154/622 (24%), Positives = 271/622 (43%), Gaps = 104/622 (16%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           SLL  C      +Q+HA + +  G H +  + + L+  Y   G L  +  VF  +   N 
Sbjct: 67  SLLESCRTLNLGKQVHA-HTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNL 125

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
             +  IL      G +E+ L +++++ L  +      +P V++ C  L     G ++H  
Sbjct: 126 YSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGV 185

Query: 157 VVKLGFDSFDDVGDAL---VEFYIK------------C-DGGFENEKGMIQRK---FKDL 197
           V+K       D+G AL     F +K            C +G  E  K +  +     KD 
Sbjct: 186 VIK----RCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDT 241

Query: 198 KSRWNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
            S WNS+IS    N   +++  +F+ L+  EG E DS TL ++L +  ++ SL  G+ VH
Sbjct: 242 IS-WNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVH 300

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY------- 309
             AVV     +  V  AL+ MYSK   L+ A++ FD ++++D   WN++IS Y       
Sbjct: 301 AQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLE 360

Query: 310 ----------------------------YQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
                                        ++G  + +L L   M  S  R D++T    +
Sbjct: 361 NIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIIL 420

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            + + +  I  GKQ+HA+ +R G +  V +  +L+DMY +C  +  A ++++ +    +V
Sbjct: 421 PACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLV 480

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           S ++M+  Y  H    E + LF  M   G   D VT +++L +CV+ GA+E      G+ 
Sbjct: 481 SQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVE-----TGHE 535

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
                + ++  N    + +  C                         ++   ++ G   +
Sbjct: 536 F---FDLMTYYNVTPSLKHYTC-------------------------IVDLLSRAGRLDE 567

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASM 580
            ++L  ++ +   +PD + +  LL  CV  G VE G I  + + E    EP+   +Y  +
Sbjct: 568 AYELVKKIPR---KPDSVMWGALLGGCVIWGNVELGEIAAESLIE---LEPNNTGNYVLL 621

Query: 581 VNLLGRAGH---MDEARELVKD 599
            NL   AG    +D  R+++KD
Sbjct: 622 ANLYAYAGRWHDLDRTRQMIKD 643


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 196/650 (30%), Positives = 345/650 (53%), Gaps = 6/650 (0%)

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           S +L+ S A  G +  + +   ++  P++ L+  +++  +  G     L  Y+ M     
Sbjct: 44  SKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA 103

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            P   T+P V++ C+ L     G   H  V+KLG +      ++LV FY K     + E+
Sbjct: 104 RPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAER 163

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR--MEGAEFDSGTLINLLRSTVE 245
                  +D+ + WN ++   V NG    +   F+ M   +E      G +  L    +E
Sbjct: 164 VFDGMPVRDIVT-WNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLE 222

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
             S++ G+ +H   +     +D+ V T+LL MY K   +  A+ +F  M  +  V WN M
Sbjct: 223 FSSMQ-GKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCM 281

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I  Y  +  P E+ +  M M   G + ++ TAI  +++ +  ++  +G+ +H  V+R   
Sbjct: 282 IGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQF 341

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              V +  +L++MY +   +  + KIF  +  KT+VSW++MI  Y+  +   EA+ LF E
Sbjct: 342 LPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLE 401

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           +  + +  D+ T+  ++PA V +G+L H + +H Y + LG    + +  A+   YA+ G 
Sbjct: 402 LLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGD 461

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  + E+FD  K+ SKD+I+WN+MI  YA HG      +++ +MK + ++P+  TF+ +L
Sbjct: 462 VVASREIFD--KMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVL 519

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           TAC  +GLV+EG + F  M + YG  P  EHY  M +LLGR G + E  + ++ MP  P 
Sbjct: 520 TACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPT 579

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           +RVWG LL+A +  ++ ++AE  AE++  +E +N G Y++LS++YA AG+W  V ++R  
Sbjct: 580 SRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLL 639

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++++GL++T   S +E+      F   D SH Q+  I+ +  IL  +I E
Sbjct: 640 MKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKE 689



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 202/396 (51%), Gaps = 12/396 (3%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  GL  ++   ++L+  YA LGL+  +++VF+ +   + + +  ++      G     
Sbjct: 133 VIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLA 192

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--GEKIHAQVVKLGFDSFDDVGDALV 173
           L  +++M   ++    D+   +    +C L+F S  G++IH  V++ G +    VG +L+
Sbjct: 193 LACFQEMH-DALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLL 251

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           + Y KC      E    +  F  +  R    WN +I     N + +++F+ F  MR EG 
Sbjct: 252 DMYCKC-----GEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGL 306

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + +  T INLL +  + +S   GR VH   V   F   + + TALL MY K+  +E ++ 
Sbjct: 307 QVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEK 366

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F K+++K  V WN MI+AY       E++ L + ++      D FT    V +   + +
Sbjct: 367 IFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGS 426

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +   +Q+H+ ++  G      + N+++ MY    D+  +R+IFD + +K V+SW++MI G
Sbjct: 427 LRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMG 486

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           Y  H Q   AL +F EMK  G++ +  T +++L AC
Sbjct: 487 YAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC 522



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 165/364 (45%), Gaps = 10/364 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y+I HGL Q++ + ++L+D Y   G ++ ++ VF ++     + +  ++   + 
Sbjct: 229 KEIHG-YVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYAL 287

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               ++    + QM  + +     T   ++ +C+     + G  +H  VV+  F     +
Sbjct: 288 NERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVL 347

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL+E Y K  G  E+ + +  +        WN++I+  +      ++  LF  +  + 
Sbjct: 348 ETALLEMYGKV-GKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQP 406

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+  ++ + V L SL   R +H   +   + ++  +  A+L MY++   +  ++
Sbjct: 407 LYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASR 466

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSIST 346
            +FDKM  KD + WN MI  Y   G  K +LE+   M  +G + +   F ++    S+S 
Sbjct: 467 EIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 347 MKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSW 403
           + +  W   MH N++    G   Q+  +  + D+     DL    +  +S+    T   W
Sbjct: 527 LVDEGW---MHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVW 583

Query: 404 SSMI 407
            S++
Sbjct: 584 GSLL 587



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/211 (18%), Positives = 100/211 (47%), Gaps = 5/211 (2%)

Query: 35  SFSLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
           + +LL  C   E+  + + +H  Y++      +++L + L++ Y  +G +  S+++F  I
Sbjct: 313 AINLLAACAQTESSLYGRSVHG-YVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKI 371

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
            +   + +  ++        Y + + ++ ++  Q +YP   T   V+ +   L       
Sbjct: 372 ANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCR 431

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           +IH+ ++ LG+     + +A++  Y +      + +   +   KD+ S WN++I     +
Sbjct: 432 QIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVIS-WNTMIMGYAIH 490

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           G+ + + E+F  M+  G + +  T +++L +
Sbjct: 491 GQGKTALEMFDEMKYNGLQPNESTFVSVLTA 521



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           T   +F LL    + +H +QIH+ YII  G  +N ++ + ++  YA  G +  S+++F+ 
Sbjct: 416 TVVPAFVLLG---SLRHCRQIHS-YIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDK 471

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           + S + + + T++   +  G+ +  L ++ +M    + P E T+  V+ +CS
Sbjct: 472 MVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS 523


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 200/610 (32%), Positives = 334/610 (54%), Gaps = 48/610 (7%)

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           F++++C  +      ++I  Q+++ GF      GD L +F + C           +R F 
Sbjct: 37  FLLKNCKSMQHL---KQIQTQILRTGFHQ---SGDTLNKFMVCCTDPSIGNLHYAERIFN 90

Query: 196 --DLKSR--WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
             D+     +N +I    +NG   K+  LF+ +R EG   D+ T   + ++   L  +  
Sbjct: 91  YIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVRE 150

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  V+   V S    D  V  +L+ MY+++  +++ + +F++M  +D V WN++IS Y +
Sbjct: 151 GEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVK 210

Query: 312 SGFPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
               ++++++   M + S  R +  T ++ +S+   +K +E GK++H  V R    + + 
Sbjct: 211 CRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYV-REQLGFTIK 269

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA----------- 419
           + N+L+DMYC+C  L+ AR+IF+ +  KTV+ W+SM+ GYV   Q  EA           
Sbjct: 270 IGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRD 329

Query: 420 --------------------LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
                               + LF EM+++ V  D  T++ +L  C  +G LE  K++HG
Sbjct: 330 VVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHG 389

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           Y  +  +   + V TA+   YAKCG IE + E+F+   +  KD  +W S+I   A +G  
Sbjct: 390 YIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFN--GLKEKDTASWTSIICGLAMNGKT 447

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           S+  +L+ +M Q+ V+PD ITF+G+L+AC + GLVEEGR  F+ M   Y  EP  EHY  
Sbjct: 448 SKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGC 507

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARV---WGPLLSACKMHSETELAELTAEKLISME 636
           +++LLGRAG +DEA EL++  P   +  +   +G LLSAC+ H   E+ E  A++L+ +E
Sbjct: 508 LIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIE 567

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
             ++  + LL+NIYA+A +W  V K+R  ++D G+KK PGCS +E+  +VHEF   D SH
Sbjct: 568 SGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASH 627

Query: 697 PQADAIYTIL 706
           P+   IY++L
Sbjct: 628 PEMREIYSML 637



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 269/546 (49%), Gaps = 55/546 (10%)

Query: 18  FLRFPAN-QTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSY- 75
           FL  P +  T  H T      LL  C++ QHL+QI  + I+  G HQ    S + ++ + 
Sbjct: 17  FLSKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQ-ILRTGFHQ----SGDTLNKFM 71

Query: 76  -----ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
                 ++G L  ++++FN I  P   +Y  ++K  +K G + K +L+++Q+  + + P 
Sbjct: 72  VCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPD 131

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
             TYPFV ++  CL +   GEK++  VVK G +    V ++L++ Y +  G  +N    +
Sbjct: 132 NFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEV-GRVQN----L 186

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVE 245
           ++ F+++  R    WN LIS  V+  + E + ++F+ M+ + +   +  T+++ L + + 
Sbjct: 187 RQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIA 246

Query: 246 LKSLELGRIVHCV-------------AVVSDFCK------------DLSVN-----TALL 275
           LK LELG+ +H               A+V  +CK            D+ +      T+++
Sbjct: 247 LKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMV 306

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           S Y     L++A+ LF++   +D V+W  MI+ Y Q     +++ L   M       D F
Sbjct: 307 SGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRF 366

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T +A ++  + +  +E GK +H  +  N       V  +LI+MY +C  +  + +IF+ +
Sbjct: 367 TLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGL 426

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-V 454
           K K   SW+S+I G   + ++ +AL LF+EM   GV+ D +T I +L AC + G +E   
Sbjct: 427 KEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGR 486

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT--WNSMISA 512
           K+    +    +         +     + G ++ A EL ++    + ++I   + +++SA
Sbjct: 487 KHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSA 546

Query: 513 YAKHGD 518
              HG+
Sbjct: 547 CRTHGN 552


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 200/652 (30%), Positives = 349/652 (53%), Gaps = 5/652 (0%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
           E+P    ++HA  +    L  ++   + L+  YA  G  + +++VF+ + + + + + ++
Sbjct: 132 EHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSL 191

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +  L   G  E        M    +     +   ++ +C    D   G  +H  V+K G 
Sbjct: 192 VSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGL 251

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           +S  ++G+ALV+ Y K  G  E+   +     +  +  WNS I      G  E   E+F+
Sbjct: 252 NSVVNLGNALVDMYGKF-GDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFR 310

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
           LM        S TL +LL + V+L    LG+ +H  ++      D+ +   L+ MY+K  
Sbjct: 311 LMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFG 370

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
             E A  +F+ +  ++ V WN MI+   Q+G   E+  L++ M ++G   + FT +  + 
Sbjct: 371 CSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLP 430

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S + +++ GKQ+HA  +R      + V N+LID+Y +C  LN AR IFD  + K  VS
Sbjct: 431 ACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE-KDGVS 489

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           ++++I GY       E+L LF +M+L G+E D V+ +  L AC N+ A +  K +HG  +
Sbjct: 490 YNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLV 549

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K  L+S   +  ++   Y K G ++ A ++F+  +I  KD+ +WN+MI  Y  HG     
Sbjct: 550 KRLLDSHPFLANSLLDVYTKGGMLDTASKIFN--RITQKDVASWNTMILGYGMHGQIDVA 607

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           F+L+  MK   +  D ++++ +L+ C + GLV+ G+  F +M  +   +P Q HYA MV+
Sbjct: 608 FELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMI-AQNIKPQQMHYACMVD 666

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG + E+ E++++MPF+ ++ VWG LL +C++H + ELA L AE L  ++PEN+G 
Sbjct: 667 LLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGY 726

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           Y LL N+Y+ +G WN    ++  ++ R ++K P  SW++ G  +  F   D+
Sbjct: 727 YTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAFLVGDE 778



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 147/600 (24%), Positives = 290/600 (48%), Gaps = 32/600 (5%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF--NSITSPNSLLY 99
           C     L++ HA  ++   L  +  L+  L+ SYA L  +  +  +   +     ++ L+
Sbjct: 24  CGGSLLLRRAHAASLVSGALTASFPLAGALLLSYAALPDIPSAHLILRHHPFRLRSAFLW 83

Query: 100 GTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF---ISGEKIHAQ 156
            ++ + L+      + L VY +M    + P + T+PF + + + +        G ++HA 
Sbjct: 84  NSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHAA 143

Query: 157 VVKLGF---DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
            ++ G    D F   G+ LV FY  C    +  +   +   +D+ S WNSL+S  + NG 
Sbjct: 144 ALRRGLLLADVF--AGNTLVTFYAVCGRAADARRVFDEMPARDVVS-WNSLVSALLTNGM 200

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            E +      M   G   +  +L+++L +    +    G  VH + +       +++  A
Sbjct: 201 LEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNA 260

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MY K   LE +  +F+ M +K+ V WN  I  +  +GF ++ LE+   M        
Sbjct: 261 LVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPG 320

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T  + + ++  +     GK++H   +R   +  + + N+L+DMY +      A  IF+
Sbjct: 321 SVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFE 380

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           +++ + VVSW++MI     +    EA RL  EM+  G   +  T++N+LPAC  + +++ 
Sbjct: 381 NIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKM 440

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H +S++  L S   V+ A+   YAKCG + +A  +FD  +   KD +++N++I  Y
Sbjct: 441 GKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE---KDGVSYNTLIVGY 497

Query: 514 AKHGDWSQC----FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR----IIFKEMK 565
           ++    SQC      L+ QM+ + +  D ++F+G L+AC N    ++G+    ++ K + 
Sbjct: 498 SQ----SQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLL 553

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +S+ +  +     S++++  + G +D A ++   +  K D   W  ++    MH + ++A
Sbjct: 554 DSHPFLAN-----SLLDVYTKGGMLDTASKIFNRITQK-DVASWNTMILGYGMHGQIDVA 607


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 313/560 (55%), Gaps = 11/560 (1%)

Query: 151 EKIHAQVVKLG--FDSFDDVGDALVEF-YIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
           ++IHAQ+++ G  FD F      +V F  ++  G  +  + +  +         NS+I  
Sbjct: 5   KQIHAQMLRTGLFFDPF--TASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
                  +++   ++ M ++G   D  T  +L +S    ++   G+ +HC +    F  D
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASD 119

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
                 L++MYS    L  A+ +FDKM DK  V W  MI  + Q   P E++ L   M++
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMK 179

Query: 328 S-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           S   + +  T +  +++ +  +++   K++H  +  +G    V ++  L+D+YC+C  + 
Sbjct: 180 SENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQ 239

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            AR +FD  + K + SW+ MI G+V      EAL LF EM+ +G++ D VT+ ++L AC 
Sbjct: 240 LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACT 299

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++GALE  K+LH Y  K  ++   ++ TA+   YAKCG IE A ++F E  +  KD++TW
Sbjct: 300 HLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHE--MPEKDVMTW 357

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            ++I   A  G      + + +M    V+PD ITF+G+L AC +AG V+EG   F  M +
Sbjct: 358 TALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSD 417

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
           +YG +P+ EHY  +V++LGRAG + EA EL+K MP  PD  V G LL AC++H   E AE
Sbjct: 418 TYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAE 477

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
             A++L+ ++P ++G YVLLSNIY ++ KW    + R  + +RG++K PGCS IE+  +V
Sbjct: 478 RAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVV 537

Query: 687 HEFWAADQSHPQADAIYTIL 706
           HEF   D SH Q+  I  +L
Sbjct: 538 HEFVKGDSSHRQSSEINEML 557



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 239/491 (48%), Gaps = 10/491 (2%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSITSPNSLLYGTILK 104
            L+QIHA+ ++  GL  +   +S ++   S    G L  ++ VF+ I +P S    +I++
Sbjct: 3   QLKQIHAQ-MLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIR 61

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
             +    +++ LL Y++M +Q + P   T+P + +SC    +   G++IH    KLGF S
Sbjct: 62  GCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCR---NSSEGKQIHCHSTKLGFAS 118

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KL 223
                + L+  Y  C G   + + +  +        W ++I +  Q  +  ++  LF ++
Sbjct: 119 DTYAQNTLMNMYSNC-GCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M+ E  + +  TL+N+L +    + L + + +H       F + + +NT L+ +Y K   
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           ++ A+ LFDK  +K+   WNIMI+ + +    +E+L L   M   G + D  T  + + +
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +  +E GK +HA + +   D  V++  +L+DMY +C  +  A ++F  +  K V++W
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTW 357

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSM 462
           +++I G     Q+  AL+ F EM ++GV+ D +T + +L AC + G + E + + +  S 
Sbjct: 358 TALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSD 417

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
             G+         +     + G I  A EL     + + D      ++ A   HG+    
Sbjct: 418 TYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPM-APDQFVLGGLLGACRIHGNLEAA 476

Query: 523 FKLYTQMKQSD 533
            +   Q+ + D
Sbjct: 477 ERAAKQLLEID 487



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 5/207 (2%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           ++L  C   + L   ++IH  YI  HG  ++++L++ L+D Y   G + L++ +F+    
Sbjct: 192 NVLTACARARDLAMVKRIH-EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQE 250

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N   +  ++    +   YE+ LL++++M  + +   + T   ++ +C+ L     G+ +
Sbjct: 251 KNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWL 310

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA + K   D    +G ALV+ Y KC G  E    +     +     W +LI      G+
Sbjct: 311 HAYIKKQRIDVDVALGTALVDMYAKC-GSIETAIQVFHEMPEKDVMTWTALILGLAMCGQ 369

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLL 240
           +E + + F  M ++G + D+ T + +L
Sbjct: 370 AENALQYFDEMHIKGVKPDAITFVGVL 396


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 213/711 (29%), Positives = 377/711 (53%), Gaps = 12/711 (1%)

Query: 10  SLQSGHVKFLRFPANQTRPHMTA-THSF-SLLNLCE--NPQHLQQIHARYIILHGLHQNL 65
           S Q  H + L   A+  + H+ +  ++F SLL  C   N   L     + I++ GL  + 
Sbjct: 37  STQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDA 96

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            ++S+LI+ YA  G   ++++VF+ +   N + + TI+   S+ G   +   ++ +M  Q
Sbjct: 97  YIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQ 156

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
            + P+  T   ++   S L      + +H   +  GF S  ++ ++++  Y KC G  E 
Sbjct: 157 GIQPSSVTVLSLLFGVSELAHV---QCLHGCAILYGFMSDINLSNSMLNVYGKC-GNIEY 212

Query: 186 EKGMIQ-RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            + +      +DL S WNSLIS   Q G   +   L K MR++G E    T  ++L    
Sbjct: 213 SRKLFDYMDHRDLVS-WNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAA 271

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
               L+LGR +H   + + F  D  V T+L+ +Y K   ++ A  +F++ SDKD V+W  
Sbjct: 272 SRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTA 331

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MIS   Q+G   ++L +   M++ G +    T  + +++ + + +   G  +   +LR  
Sbjct: 332 MISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQE 391

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               V+  NSL+ MY +C  L+ +  +FD +  + +VSW++M+ GY  +    EAL LF+
Sbjct: 392 LPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFN 451

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EM+ +    D +TI+++L  C + G L   K++H + ++ GL     V+T++   Y KCG
Sbjct: 452 EMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCG 511

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            ++ A   F++  + S D+++W+++I  Y  HG      + Y++  +S ++P+ + FL +
Sbjct: 512 DLDTAQRCFNQ--MPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSV 569

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L++C + GLVE+G  I++ M + +G  P  EH+A +V+LL RAG ++EA  + K     P
Sbjct: 570 LSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDP 629

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
              V G +L AC+ +   EL +  A  ++ + P +AGN+V L++ YA+  KW  V +  T
Sbjct: 630 VLDVLGIILDACRANGNNELGDTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAWT 689

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++R  GLKK PG S+I+I   +  F+    SHPQ   I   L IL  E+++
Sbjct: 690 YMRSLGLKKIPGWSFIDIHGTITTFFTDHNSHPQFQEIVCTLKILRKEMIK 740



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 157/313 (50%), Gaps = 7/313 (2%)

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N  I+ +   G   + L     M+++   +D +T  + + + S +     G  +H  +L 
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           +G      + +SLI+ Y +    + ARK+FD +  + VV W+++I  Y    +  EA  L
Sbjct: 90  SGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSL 149

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F EM+ +G++   VT++++L     +  L HV+ LHG ++  G  S  +++ ++   Y K
Sbjct: 150 FDEMRRQGIQPSSVTVLSLL---FGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGK 206

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG IE + +LFD   +D +D+++WNS+ISAYA+ G+  +   L   M+         TF 
Sbjct: 207 CGNIEYSRKLFD--YMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFG 264

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L+   + G ++ GR +  ++  + G+        S++ +  + G +D A  + +    
Sbjct: 265 SVLSVAASRGELKLGRCLHGQILRA-GFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSD 323

Query: 603 KPDARVWGPLLSA 615
           K D  +W  ++S 
Sbjct: 324 K-DVVLWTAMISG 335



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 11/219 (5%)

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
           T  S ++ I  + T     + L  ++ M    V  D  T  ++L AC  +        LH
Sbjct: 25  TTNSVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLH 84

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              +  GL+  + + +++   YAK G  ++A ++FD   +  ++++ W ++I  Y++ G 
Sbjct: 85  QRILVSGLSLDAYIASSLINFYAKFGFADVARKVFD--YMPERNVVPWTTIIGCYSRTGR 142

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE--EGRIIFKEMKESYGYEPSQEH 576
             + F L+ +M++  ++P  +T L LL        V+   G  I       YG+      
Sbjct: 143 VPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAIL------YGFMSDINL 196

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
             SM+N+ G+ G+++ +R+L   M  + D   W  L+SA
Sbjct: 197 SNSMLNVYGKCGNIEYSRKLFDYMDHR-DLVSWNSLISA 234


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 202/620 (32%), Positives = 343/620 (55%), Gaps = 18/620 (2%)

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I S N +L G +       G+Y   L  +  M    +   + T+  V+ +   L    
Sbjct: 285 SEIISRNKILSGYL-----HAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLA 339

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSL 204
            G+++H   +KLG D    V ++L+  Y K       + G+ +  F ++  R    WNS+
Sbjct: 340 LGQQVHCMALKLGLDLMLTVSNSLINMYCKL-----RKIGLARTVFNNMSERDLISWNSV 394

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL-KSLELGRIVHCVAVVSD 263
           I+   Q+    ++  LF  +   G + D  T+ ++L++   L + L L + +H  A+ ++
Sbjct: 395 IAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTN 454

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              D  V+TAL+  YS+   +++A++LF + ++ D V WN M+S Y QS    ++LEL  
Sbjct: 455 NVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFA 513

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M + G R+D FT    + +   +  I  GKQ+HA  +++G D  + V + ++DMY +C 
Sbjct: 514 LMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCG 573

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           D++ A+  FDS+     V+W+++I G + + +   AL +FS+M+L GV  D  TI  +  
Sbjct: 574 DMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAK 633

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           A   + ALE  + +H  ++KL   S   V T++   YAKCG I+ A  LF  ++I+  +I
Sbjct: 634 ASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLF--KRIEMMNI 691

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
             WN+M+   A+HG+  +  +L+ QM+   ++PD +TF+G+L+AC ++GLV E     + 
Sbjct: 692 TAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRS 751

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M   YG +P  EHY+ + + LGRAG + EA  L+  M  +  A ++  LL+AC++  +TE
Sbjct: 752 MHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTE 811

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
             +  A KL+ +EP ++  YVLLSN+YAAA KW+ +   RT ++   +KK PG SWIE+ 
Sbjct: 812 TGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVK 871

Query: 684 KLVHEFWAADQSHPQADAIY 703
             +H F   D+S+PQ + IY
Sbjct: 872 NKIHLFVVDDRSNPQTELIY 891



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/580 (23%), Positives = 262/580 (45%), Gaps = 45/580 (7%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HAR + L   +    L +NLI  Y+  G L+ +++VF+ +   + + + +IL   ++  E
Sbjct: 69  HARILALEE-NPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSE 127

Query: 112 -----YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
                 ++  L+++ +    +Y +  T   +++ C       + E  H    K+G D  D
Sbjct: 128 GVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDD 187

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V  ALV  Y+K     E      +  ++D+   WN ++   ++ G  E++ +L      
Sbjct: 188 FVAGALVNIYLKFGKVKEGRVLFEEMPYRDV-VLWNLMLKAYLEMGFKEEAIDLSSAFHT 246

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G   +  TL   L S +     E G++                            S E+
Sbjct: 247 SGLHPNEITL--RLLSRISGDDSEAGQV---------------------------KSFEN 277

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
                D  +  + +  N ++S Y  +G     L+  M MV S    D  T I  +++   
Sbjct: 278 GN---DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVR 334

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           + ++  G+Q+H   L+ G D  ++V NSLI+MYC+   +  AR +F+++  + ++SW+S+
Sbjct: 335 LDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSV 394

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLG 465
           I G    D  +EA+ LF ++   G++ D  T+ ++L A  ++   L   K +H +++K  
Sbjct: 395 IAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTN 454

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             + S V+TA+  +Y++  C++ A  LF        D++ WN+M+S Y +  D  +  +L
Sbjct: 455 NVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF---DLVAWNAMMSGYTQSHDGHKTLEL 511

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M +   R D  T   +L  C     + +G+ +     +S GY+      + ++++  
Sbjct: 512 FALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYV 570

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           + G M  A+     +P  PD   W  L+S C  + E E A
Sbjct: 571 KCGDMSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERA 609



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 189/407 (46%), Gaps = 40/407 (9%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
           D + G+  HA+++ L  +    + + L+  Y KC       +   +   +DL S WNS++
Sbjct: 61  DLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVS-WNSIL 119

Query: 206 SLAVQNGKS-----EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +   Q+ +      +++F LF+++R +       TL  +L+  +    +      H  A 
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYAC 179

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D  V  AL+++Y K   +++ ++LF++M  +D V+WN+M+ AY + GF +E+++
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L      SG   +  T +  +S IS                  G D +     S      
Sbjct: 240 LSSAFHTSGLHPNEIT-LRLLSRIS------------------GDDSEAGQVKSF----- 275

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
             E+ N      D+     ++S + ++ GY+   Q    L+ F +M    +E D VT I 
Sbjct: 276 --ENGN------DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFIL 327

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L   V + +L   + +H  ++KLGL+ + +V+ ++   Y K   I +A  +F+   +  
Sbjct: 328 VLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFN--NMSE 385

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
           +D+I+WNS+I+  A+     +   L+ Q+ +  ++PD  T   +L A
Sbjct: 386 RDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKA 432



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 104/194 (53%), Gaps = 2/194 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA Y I  G   +L +SS ++D Y   G +S +Q  F+SI  P+ + + T++    +
Sbjct: 544 KQVHA-YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIE 602

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE E+ L V+ QM L  + P E T   + ++ SCL     G +IHA  +KL   S   V
Sbjct: 603 NGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFV 662

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G +LV+ Y KC G  ++   + +R      + WN+++    Q+G+ +++ +LFK M   G
Sbjct: 663 GTSLVDMYAKC-GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLG 721

Query: 229 AEFDSGTLINLLRS 242
            + D  T I +L +
Sbjct: 722 IKPDKVTFIGVLSA 735



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA  + L+      +  ++L+D YA  G +  +  +F  I   N   +  +L  L++
Sbjct: 645 RQIHANALKLNCTSDPFV-GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQ 703

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            GE ++ L ++KQM    + P + T+  V+ +CS
Sbjct: 704 HGEGKEALQLFKQMESLGIKPDKVTFIGVLSACS 737


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 207/657 (31%), Positives = 347/657 (52%), Gaps = 82/657 (12%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           L+  YA  G L   ++VF+++   N  L+  ++   +K G++++++ ++K M  +     
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG---- 57

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
                            I G++          +S  ++ D L      CD          
Sbjct: 58  -----------------IEGKR---------SESASELFDKL------CD---------- 75

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
               +D+ S WNS+IS  V NG +E+   ++K M   G + D  T+I++L    +  +L 
Sbjct: 76  ----RDVIS-WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLS 130

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LG+ VH +A+ S F + ++ +  LL MYSK   L+ A  +F+KM +++ V W  MI+ Y 
Sbjct: 131 LGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 190

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           + G+   ++ LL  M + G + D+    + + + +   +++ GK +H  +  N     + 
Sbjct: 191 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLF 250

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V N+L+DMY +C  +  A  +F ++  K ++SW++M+                 E+K   
Sbjct: 251 VCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------GELK--- 291

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
              D  T+  ILPAC ++ ALE  K +HGY ++ G +S   V  A+   Y KCG + +A 
Sbjct: 292 --PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLAR 349

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            LFD   I SKD+++W  MI+ Y  HG  ++    + +M+ + + PD ++F+ +L AC +
Sbjct: 350 LLFD--MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 407

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           +GL+E+G   F  MK  +  EP  EHYA MV+LL R G++ +A + ++ +P  PDA +WG
Sbjct: 408 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWG 467

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LL  C+++ + ELAE  AE++  +EPEN G YVLL+NIYA A KW  V +MR  +  +G
Sbjct: 468 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKG 527

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQ-SHPQADAIYTILGILELEIMEGRRESSEELKF 726
           L+K PGCSWIEI   V+ F + +  SHP +  I ++L  +       RR+  EE  F
Sbjct: 528 LRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKM-------RRKMKEEGYF 577



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 163/366 (44%), Gaps = 29/366 (7%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL 116
           I     + +  S+ L+D Y+  G L  + +VF  +   N + + +++   ++ G  +  +
Sbjct: 140 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAI 199

Query: 117 LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           ++ +QM  + +         ++ +C+      +G+ +H  +      S   V +AL++ Y
Sbjct: 200 ILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMY 259

Query: 177 IKCDGGFENEKGMIQRK-FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
            KC G  E    +      KD+ S WN+++             EL         + DS T
Sbjct: 260 AKC-GSMEGANSVFSTMVVKDIIS-WNTMVG------------EL---------KPDSRT 296

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           +  +L +   L +LE G+ +H   + + +  D  V  AL+ +Y K   L  A++LFD + 
Sbjct: 297 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 356

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            KD V W +MI+ Y   G+  E++     M  +G   D  + I+ + + S    +E G +
Sbjct: 357 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 416

Query: 356 MHANVLRNGSDYQVSVHN--SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKG-YV 411
               +++N  + +  + +   ++D+     +L+ A K  +++      + W +++ G  +
Sbjct: 417 FFY-IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRI 475

Query: 412 THDQSL 417
            HD  L
Sbjct: 476 YHDIEL 481



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 36/224 (16%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C     L   + +H  YI  + +  NL + + L+D YA  G +  +  VF+++  
Sbjct: 219 SILHACARSGSLDNGKDVH-DYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVV 277

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++  L                      P   T   ++ +C+ L     G++I
Sbjct: 278 KDIISWNTMVGELK---------------------PDSRTMACILPACASLSALERGKEI 316

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-----KDLKSRWNSLISLA 208
           H  +++ G+ S   V +ALV+ Y+KC        G+ +  F     KDL S W  +I+  
Sbjct: 317 HGYILRNGYSSDRHVANALVDLYVKC-----GVLGLARLLFDMIPSKDLVS-WTVMIAGY 370

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +G   ++   F  MR  G E D  + I++L +      LE G
Sbjct: 371 GMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 414


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 212/712 (29%), Positives = 363/712 (50%), Gaps = 91/712 (12%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLID---SYANL-GLLSLSQQVFNSITSPNSLLYGT 101
           +HL   H + ++ H     L  SS L D   S  NL G  +   ++  S  +  + L  T
Sbjct: 3   RHLHHHHGQELVAH-----LRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNT 57

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   ++ G       V+ ++      P  +T+ +                         
Sbjct: 58  LVSTYARLGRLRDARRVFDEI------PLRNTFSY------------------------- 86

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
                   +AL+  Y +  G  +  + + +      +  +N++++   ++G+   +  L 
Sbjct: 87  --------NALLSAYARL-GRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALR 137

Query: 222 KLMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
            L  M   +F  ++ +  + L +    K    G  VH +   S    D+ + +AL+ MY+
Sbjct: 138 FLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYA 197

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K    EDA+ +FD M +++ V WN +I+ Y Q+G   E+L L + M+ +GF  D  T  +
Sbjct: 198 KCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSS 257

Query: 340 AVSSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
            +S+ + +     G+Q+HA++++ +     + ++N+L+DMY +C     AR IFDS+ ++
Sbjct: 258 VMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR 317

Query: 399 TVVS-------------------------------WSSMIKGYVTHDQSLEALRLFSEMK 427
           ++VS                               W+ +I  Y  + +  EA+RLF ++K
Sbjct: 318 SIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK 377

Query: 428 LEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGYSMKLGLNSLSSVNTAIFISYA 481
            + +     T  N+L AC NI  L+     HV  L  G+    G  S   V  ++   Y 
Sbjct: 378 RDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYL 437

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           K G I+   ++F  E++ ++D ++WN+MI  YA++G       L+ +M  S+  PD +T 
Sbjct: 438 KTGSIDDGAKVF--ERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTM 495

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L+AC ++GLV+EGR  F  M E +G  PS++HY  MV+LLGRAGH+ EA EL+ DMP
Sbjct: 496 IGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMP 555

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +PD+ +W  LL AC++H   EL E TA +L  ++P+N+G YVLLSN+YA  GKW  V +
Sbjct: 556 MEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFR 615

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +R  ++DRG+ K PGCSWIEIG+ ++ F A D+ HP  + I+  L I+++E+
Sbjct: 616 VRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEM 667



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 143/576 (24%), Positives = 260/576 (45%), Gaps = 67/576 (11%)

Query: 6   PPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIH-ARYIILHGLHQN 64
           P     ++ H + L+ P         A  +F L  L      L ++  AR +      +N
Sbjct: 31  PNLSGARAAHARILKSP--------VAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRN 82

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
               + L+ +YA LG    ++ +F +I  P+   Y  ++  L++ G       +    A+
Sbjct: 83  TFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAM 142

Query: 125 QSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
            +     + Y F   + +C+   D  +GE++H  V +        +  ALV+ Y KC+  
Sbjct: 143 HADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERP 202

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            +      +R F  +  R    WNSLI+   QNG   ++  LF  M   G   D  TL +
Sbjct: 203 ED-----ARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSS 257

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCK-DLSVNTALLSMYSKL---------------- 281
           ++ +   L +   GR VH   V  D  + D+ +N AL+ MY+K                 
Sbjct: 258 VMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR 317

Query: 282 ---------------ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
                          A++EDA+++F +M +K+ + WN++I+AY Q+G  +E++ L + + 
Sbjct: 318 SIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK 377

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN------GSDYQVSVHNSLIDMYC 380
           R       +T    +++   + +++ G+Q H +VL+       G +  V V NSL+DMY 
Sbjct: 378 RDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYL 437

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   ++   K+F+ +  +  VSW++MI GY  + ++ +AL LF  M       D VT+I 
Sbjct: 438 KTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIG 497

Query: 441 ILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC + G + E  +Y H  +   G+       T +     + G ++ A EL ++  ++
Sbjct: 498 VLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPME 557

Query: 500 SKDIITWNSMISAYAKH-----GDWS--QCFKLYTQ 528
             D + W S++ A   H     G+W+  + F+L  Q
Sbjct: 558 -PDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQ 592


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 280/486 (57%), Gaps = 15/486 (3%)

Query: 236 LINLLRSTVELKSLELGRIVH------CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           ++++L++      + LGR VH      CV   + FC     NT LL MY+K   L+ A +
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFC-----NT-LLDMYAKCGVLDGAIL 54

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +FD MS +  V W  +I+AY + G   E++ L   M R G   D+FT    + + +   +
Sbjct: 55  VFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGS 114

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E GK +H  +  N     + V N+L+DMY +C  +  A  +F  +  K ++SW++MI G
Sbjct: 115 LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGG 174

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y  +    EAL LF +M LE ++ D  T+  ILPAC ++ +L+  K +HG+ ++ G  S 
Sbjct: 175 YSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSD 233

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V  A+   Y KCG   +A  LFD   I +KD+ITW  MI+ Y  HG  +     + +M
Sbjct: 234 QQVANALVDMYVKCGVPVLARLLFD--MIPTKDLITWTVMIAGYGMHGFGNNAITTFNEM 291

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +Q+ + PD ++F+ +L AC ++GL++EG   F  M++    +P  EHYA +V+LL R+G 
Sbjct: 292 RQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGK 351

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           +  A + +K MP +PDA +WG LLS C++H + +LAE  AE +  +EPEN G YVLL+N 
Sbjct: 352 LAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANT 411

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA A KW  V K+R  +  RGLKK PGCSWIE+   VH F A + SHPQA  I  +L  L
Sbjct: 412 YAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRL 471

Query: 710 ELEIME 715
             ++ E
Sbjct: 472 RSKMKE 477



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 190/388 (48%), Gaps = 14/388 (3%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRK 193
           ++++C+   D   G  +H   VK          + L++ Y KC   DG       M  R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
                  W SLI+   + G S+++  LF  M  EG   D  T+  +L +     SLE G+
Sbjct: 64  V----VTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            VH     +D   ++ V  AL+ MY+K  S+EDA  +F +M  KD + WN MI  Y ++ 
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDYQVSV 371
            P E+L L   MV    + D  T    + + +++ +++ GK++H ++LRNG  SD QV+ 
Sbjct: 180 LPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA- 237

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N+L+DMY +C     AR +FD + TK +++W+ MI GY  H     A+  F+EM+  G+
Sbjct: 238 -NALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGI 296

Query: 432 EVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           E D V+ I+IL AC + G L E  ++ +    +  +         I    A+ G + MA 
Sbjct: 297 EPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAY 356

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGD 518
           +      I+  D   W +++S    H D
Sbjct: 357 KFIKSMPIEP-DATIWGALLSGCRIHHD 383



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 170/361 (47%), Gaps = 7/361 (1%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           +H      + L+D YA  G+L  +  VF+ ++    + + +++   ++ G  ++ + ++ 
Sbjct: 29  VHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFH 88

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           +M  + + P   T   V+ +C+C     +G+ +H  + +    S   V +AL++ Y KC 
Sbjct: 89  EMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCG 148

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
              +     ++   KD+ S WN++I    +N    ++  LF  M +E  + D  TL  +L
Sbjct: 149 SMEDANSVFLEMPVKDIIS-WNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACIL 206

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +   L SL+ G+ VH   + + F  D  V  AL+ MY K      A++LFD +  KD +
Sbjct: 207 PACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLI 266

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            W +MI+ Y   GF   ++     M ++G   D  + I+ + + S    ++ G +   NV
Sbjct: 267 TWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFF-NV 325

Query: 361 LRNGSDYQVSVHN--SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKG-YVTHDQS 416
           +++  + +  + +   ++D+      L  A K   S+  +   + W +++ G  + HD  
Sbjct: 326 MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVK 385

Query: 417 L 417
           L
Sbjct: 386 L 386



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 2/186 (1%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           YI  + +  N+ + + L+D YA  G +  +  VF  +   + + + T++   SK     +
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L ++  M L+ M P   T   ++ +C+ L     G+++H  +++ GF S   V +ALV+
Sbjct: 184 ALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y+KC               KDL + W  +I+    +G    +   F  MR  G E D  
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLIT-WTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEV 301

Query: 235 TLINLL 240
           + I++L
Sbjct: 302 SFISIL 307


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  348 bits (893), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 207/660 (31%), Positives = 346/660 (52%), Gaps = 27/660 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG-------TILKNLS 107
           Y I  G  ++L  S   ID+ +++G + L ++ F S ++ + +L G       + LKNL 
Sbjct: 8   YSITSGSIRHLDFSKIWIDTTSSIGDVFLLKEYF-SPSNKHFVLEGVEEIISFSFLKNL- 65

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
            FG   K                  T   +I++ +   +   G+++HA +++ G      
Sbjct: 66  -FGSGHK-------------LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTF 111

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           + +  +  Y KC G  +    +  +  +     W S+I+    N + +++   F  MR+E
Sbjct: 112 LSNHFLNLYSKC-GELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIE 170

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G       L ++L++   L +++ G  VHC+ V   F  +L V + L  MYSK   L DA
Sbjct: 171 GEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDA 230

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
              F++M  KD V+W  MI  + ++G  K++L   M MV      D     + +S+ S +
Sbjct: 231 CKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSAL 290

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSM 406
           K   +GK +HA +L+ G +Y+  + N+L DMY +  D+  A  +F       ++VS +++
Sbjct: 291 KASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAI 350

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I GYV  DQ  +AL  F +++  G+E +  T  +++ AC N   LEH   LHG  +K   
Sbjct: 351 IDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNF 410

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V++ +   Y KCG  + + +LFDE  I++ D I WN+++  +++HG      + +
Sbjct: 411 KRDPFVSSTLVDMYGKCGLFDHSIQLFDE--IENPDEIAWNTLVGVFSQHGLGRNAIETF 468

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M    ++P+ +TF+ LL  C +AG+VE+G   F  M++ YG  P +EHY+ +++LLGR
Sbjct: 469 NGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGR 528

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG + EA + + +MPF+P+   W   L ACK+H + E A+  A+KL+ +EPEN+G +VLL
Sbjct: 529 AGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLL 588

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SNIYA   +W  V  +R  ++D  + K PG SW++I    H F   D SHPQ   IY  L
Sbjct: 589 SNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKL 648


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 307/524 (58%), Gaps = 17/524 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N++IS  + NG  E+ FE ++ MR EG   D  T    +++ +++  LE+ +I H +  
Sbjct: 107 FNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDV--LEIKKI-HGLLF 163

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D+ + +AL++ Y K   +E A++ F+++  +D V+WN M++ Y Q G  +  LE
Sbjct: 164 KFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLE 223

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M         FT    +S  + M ++  G+ +H   ++ G D  V+V NSLIDMY 
Sbjct: 224 TFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYG 283

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE---ALRLFSEMKLEGVEVDFVT 437
           +C+ +  A +IF+ ++ K + SW+S++     H+Q  +    LRL   M   G++ D VT
Sbjct: 284 KCKCIEDALEIFEMMREKDIFSWNSIVS---VHEQCGDHDGTLRLLDRMLGAGIQPDLVT 340

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSS------VNTAIFISYAKCGCIEMAGE 491
           +  +LPAC ++ AL H + +HGY +  GL           +  A+   YAKCG +  A  
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHL 400

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F  E++ +KD+ +WN MI  Y  HG  ++  +++++M +  ++PD +TF+G+L+AC +A
Sbjct: 401 VF--ERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHA 458

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G V +GR    +MK  Y   P+ EHY  ++++LGRAG +DEA EL   MP + +  VW  
Sbjct: 459 GFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRA 518

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LL+AC++H    LAE+ A+++  +EPE+ G+YVL+SN+Y A G++  V ++R  +R + +
Sbjct: 519 LLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNV 578

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +KTPGCSWIE+   VH F +AD++HP+A +IY  L  L   + E
Sbjct: 579 RKTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXE 622



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 208/433 (48%), Gaps = 20/433 (4%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N   +  I+      G  E+    Y++M  + + P + T+P  I++C   LD +  +KIH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKAC---LDVLEIKKIH 159

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
             + K G +    +G ALV  Y+K  G  E+     Q  F++L  R    WN++++   Q
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKF-GLMEHA----QVAFEELPIRDVVLWNAMVNGYAQ 214

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G+ E   E F+ M  E       T+   L     +  L  GRI+H  A+   +   ++V
Sbjct: 215 IGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAV 274

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           + +L+ MY K   +EDA  +F+ M +KD   WN ++S + Q G    +L LL  M+ +G 
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGI 334

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVL-----RNGSDY-QVSVHNSLIDMYCECED 384
           + DL T    + + S +  +  G+++H  ++     ++G D   V + N++IDMY +C  
Sbjct: 335 QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGS 394

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  A  +F+ +  K V SW+ MI GY  H    EAL +FS M    ++ D VT + +L A
Sbjct: 395 MRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSA 454

Query: 445 CVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           C + G +   + +L     K  +       T +     + G ++ A EL     I++  +
Sbjct: 455 CSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPV 514

Query: 504 ITWNSMISAYAKH 516
           + W ++++A   H
Sbjct: 515 V-WRALLAACRLH 526



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 190/392 (48%), Gaps = 16/392 (4%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           +  C +   +++IH   +   GL  ++ + S L++ Y   GL+  +Q  F  +   + +L
Sbjct: 146 IKACLDVLEIKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVL 204

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           +  ++   ++ G++E  L  +++M  +S+ P+  T    +   + + D  +G  IH   +
Sbjct: 205 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAM 264

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
           K+G+DS   V ++L++ Y KC    +  +     + KD+ S WNS++S+  Q G  + + 
Sbjct: 265 KMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS-WNSIVSVHEQCGDHDGTL 323

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK------DLSVNT 272
            L   M   G + D  T+  +L +   L +L  GR +H   +VS   K      D+ +  
Sbjct: 324 RLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKN 383

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           A++ MY+K  S+ DA ++F++MS+KD   WNIMI  Y   G+  E+LE+   M     + 
Sbjct: 384 AVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKP 443

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCA 388
           D  T +  +S+ S    +  G+     +++  S Y V+     +  +IDM      L+ A
Sbjct: 444 DEVTFVGVLSACSHAGFVSQGRNF---LVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500

Query: 389 RKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEA 419
            ++  ++  +   V W +++     H  ++ A
Sbjct: 501 YELALTMPIEANPVVWRALLAACRLHKHAVLA 532



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 10/233 (4%)

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D      V +++++I G++T+    E    + +M+ EGV  D  T    + AC+++  LE
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDV--LE 154

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            +K +HG   K GL     + +A+   Y K G +E A   F+E  I  +D++ WN+M++ 
Sbjct: 155 -IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI--RDVVLWNAMVNG 211

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA+ G +    + + +M    V P   T  G L+     G +  GRII        GY+ 
Sbjct: 212 YAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHG-FAMKMGYDS 270

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA---CKMHSET 622
                 S++++ G+   +++A E+ + M  K D   W  ++S    C  H  T
Sbjct: 271 GVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIVSVHEQCGDHDGT 322



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE-GRII 560
           ++  +N++IS +  +G   + F+ Y +M+   V PD  TF   + AC++   +++   ++
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLL 162

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           FK     +G E      +++VN   + G M+ A+   +++P + D  +W  +++      
Sbjct: 163 FK-----FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIG 216

Query: 621 ETELAELTAEKL 632
           + E+   T  ++
Sbjct: 217 QFEMVLETFRRM 228


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 190/627 (30%), Positives = 340/627 (54%), Gaps = 7/627 (1%)

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
           +SP++ L+  +++  +  G  E  L  Y+ M      P   T+P V++ C+ L     G 
Sbjct: 68  SSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGR 127

Query: 152 KIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
             H+  ++LG   S    G++L+ FY K     + E+       +D+ + WNS++   V 
Sbjct: 128 AAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVT-WNSMVDGYVS 186

Query: 211 NGKSEKSFELFKLMRMEG--AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           NG    + + F+ M  EG   + D   +I  L +     +L  GR VH   +     +D+
Sbjct: 187 NGLGALALDCFREMH-EGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDV 245

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V T+LL MY K  ++  A+ +F  M  +  V WN MI  Y  +G P+E+ +  + M   
Sbjct: 246 KVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAE 305

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G + ++ TAI  +++ +  ++  +G+ +H  V R+     V +  +L++MY +   +  +
Sbjct: 306 GHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSS 365

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             IF  +  KT+VSW++MI  Y+  +   EA+ LF E+  + +  D+ T+  ++PA V +
Sbjct: 366 ETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLL 425

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           G L   + +H Y ++L     + V  A+   YA+CG +  + ++FD  K+  KD+I+WN+
Sbjct: 426 GLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFD--KMAGKDVISWNT 483

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +I  YA HG      +++++MK + ++P+  TF+ +LTAC  +G+ +EG I F  M+  Y
Sbjct: 484 IIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDY 543

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G  P  EHY  M +LLGRAG + E  + ++ +P  P  R+WG LL+A +  ++ ++AE  
Sbjct: 544 GIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYA 603

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AE++  +E +N G YV+LS++YA AG+W  V ++R+ + ++GL++T   S +E+      
Sbjct: 604 AERIFELEHDNTGCYVILSSMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCS 663

Query: 689 FWAADQSHPQADAIYTILGILELEIME 715
           F   D +HPQ+  I+ +  +L  +I E
Sbjct: 664 FVNGDMTHPQSKTIHEVSDVLSRKIGE 690



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 208/400 (52%), Gaps = 12/400 (3%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           H+  I L  +   +   ++L+  YA LG+++ +++VF+ +   + + + +++      G 
Sbjct: 130 HSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGL 189

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD--FISGEKIHAQVVKLGFDSFDDVG 169
               L  +++M  + +    D    +    +C LD   + G ++HA V++ G +    VG
Sbjct: 190 GALALDCFREMH-EGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVG 248

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
            +L++ Y KC G   + +GM    F  + SR    WN +I     NG  E++F+ F  M+
Sbjct: 249 TSLLDMYCKC-GAIASAEGM----FATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMK 303

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            EG + +  T INLL +  + +S   GR VH     S F   + + TALL MYSK+  ++
Sbjct: 304 AEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVK 363

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            ++ +F +M++K  V WN MI+AY       E++ L + ++      D FT  A V +  
Sbjct: 364 SSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFV 423

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  +   +QMH+ ++R        V N+++ MY  C D+  +RKIFD +  K V+SW++
Sbjct: 424 LLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNT 483

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           +I GY  H Q   AL +FSEMK  G++ +  T +++L AC
Sbjct: 484 IIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTAC 523



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 14/366 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA Y+I HGL Q++ + ++L+D Y   G ++ ++ +F ++ S   + +  ++   + 
Sbjct: 230 REVHA-YVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYAL 288

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E+    + QM  +       T   ++ +C+     + G  +H  V +  F     +
Sbjct: 289 NGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVL 348

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             AL+E Y K      +E    Q   K L S WN++I+  +      ++  LF  +  + 
Sbjct: 349 ETALLEMYSKVGKVKSSETIFGQMTNKTLVS-WNNMIAAYMYKEMYNEAITLFLELLNQP 407

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              D  T+  ++ + V L  L   R +H   V  D+ ++  V  A++ MY++   +  ++
Sbjct: 408 LYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSR 467

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSIST 346
            +FDKM+ KD + WN +I  Y   G  K +LE+   M  +G + +   F ++    S+S 
Sbjct: 468 KIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSG 527

Query: 347 MKNIEWGKQMHANVLRNGSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVV 401
           M +  W   +  N+++   DY    Q+  +  + D+     DL    K  +S+  T T  
Sbjct: 528 MADEGW---IQFNLMQR--DYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFR 582

Query: 402 SWSSMI 407
            W S++
Sbjct: 583 IWGSLL 588


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  348 bits (892), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 214/649 (32%), Positives = 337/649 (51%), Gaps = 74/649 (11%)

Query: 132 DTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG- 188
           D+ PF  ++ +C           +HA+++K  F S   + + LV+ Y KC G  E+ +  
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKC-GFLEDARKV 76

Query: 189 ---MIQRK-----------------------FKDLKSR----WNSLISLAVQNGKSEKSF 218
              M QR                        FK +  R    WN+++S   Q  + E++ 
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
                M  E    +  +  + L +   L  L +G  +H +   S +  D+ + +AL+ MY
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMY 196

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           SK   +  A+  FD M  ++ V WN +I+ Y Q+G   ++LE+ + M+  G   D  T  
Sbjct: 197 SKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLA 256

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFD---- 393
           +  S+ +++  I  G Q+HA V+++      + + N+L+DMY +C  +N AR +FD    
Sbjct: 257 SVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 394 -----------------SVKT----------KTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
                            SVK           + VVSW+++I GY  + ++ EA+RLF  +
Sbjct: 317 RDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 427 KLEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGYSMKLGLNSLSSVNTAIFISY 480
           K E +     T  N+L AC N+  L+     H   L HG+  K G +S   V  ++   Y
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMY 436

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            KCG +E    +F  E++  +D ++WN+MI  YA++G  ++  +++ +M  S  RPD +T
Sbjct: 437 MKCGLVEDGRLVF--ERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVT 494

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
            +G+L+AC +AGLVEEGR  F+ M   +G  P ++HY  MV+LLGRAG +DEA  L++ M
Sbjct: 495 MIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTM 554

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660
           P +PDA VWG LL+ACK+H    L +  AE+L+ ++P N+G YVLLSN+YA  G+W  V 
Sbjct: 555 PMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVV 614

Query: 661 KMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           ++R  +R  G+ K PGCSWI I   +H F   D+ HP    IY IL IL
Sbjct: 615 RVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKIL 663



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 144/558 (25%), Positives = 257/558 (46%), Gaps = 84/558 (15%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL+ C   + +   + +HAR II       + + + L+D Y   G L  +++VF+ +   
Sbjct: 25  LLDTCVKSKSVFEARLVHAR-IIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQR 83

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQM---------ALQSMYPAEDTYPFVIR------ 139
           N+  +  +L  L+KFG  ++ L ++K M         A+ S +   D +   +R      
Sbjct: 84  NTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMH 143

Query: 140 ----------------SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
                           +C+ L+D   G +IH  + K  +     +G ALV+ Y KC    
Sbjct: 144 SEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKC---- 199

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
                  QR F D+  R    WNSLI+   QNG + K+ E+F  M   G E D  TL ++
Sbjct: 200 -RVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASV 258

Query: 240 LRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSKLASLEDAKMLFDKMS--- 295
             +   L ++  G  +H   +  D +  DL +  AL+ MY+K   + +A+++FD+M    
Sbjct: 259 ASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRD 318

Query: 296 ----------------------------DKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
                                       +++ V WN +I+ Y Q+G  +E++ L + + R
Sbjct: 319 VVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKR 378

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN------GSDYQVSVHNSLIDMYCE 381
                  +T    +++ + + +++ G+Q H ++L++      G D  + V NSLIDMY +
Sbjct: 379 ESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMK 438

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C  +   R +F+ +  +  VSW++MI GY  +    EAL +F EM + G   D VT+I +
Sbjct: 439 CGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGV 498

Query: 442 LPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           L AC + G +E  + Y    +++ GL  +    T +     + GC++ A  L     ++ 
Sbjct: 499 LSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEP 558

Query: 501 KDIITWNSMISAYAKHGD 518
            D + W S+++A   HG+
Sbjct: 559 -DAVVWGSLLAACKVHGN 575


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  348 bits (892), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 217/724 (29%), Positives = 380/724 (52%), Gaps = 46/724 (6%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           F+LL L      +    A +  +  L ++  L + +I +Y  LGL+  + +VF  +++P+
Sbjct: 108 FNLLRLSVKYTDIDLARALHASILKLGEDTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPD 167

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
            + Y  ++ + SK     + + ++ +M +  + P E ++  ++ +C   L+   G ++HA
Sbjct: 168 VVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHA 227

Query: 156 QVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
             +KLG+     V +AL+  Y KC   D        M QR   D+ S WN++IS  V+  
Sbjct: 228 LAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQR---DIAS-WNTMISSLVKGL 283

Query: 213 KSEKSFELFKLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
             EK+ ELF+++   +G + D  TL  LL +     +   GR +H  A+      +LSV+
Sbjct: 284 SYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVS 343

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ-------------------- 311
            A++  Y++  SL     LF++M  +D + W  MI+AY +                    
Sbjct: 344 NAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSV 403

Query: 312 ------SGFPK-----ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
                 +GF K     ++L L + MV+ G     FT    +++   +  +E  +Q+H  +
Sbjct: 404 SYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFI 463

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK--TVVSWSSMIKGYVTHDQSLE 418
           ++ G      +  +LIDM  +C  ++ A ++F S+ T     +  +SMI GY  +    E
Sbjct: 464 IKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEE 523

Query: 419 ALRLFSEMKLEGVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           A+ LF   + EG  V D V   +IL  C  +G  E  K +H  ++K G ++   V  +I 
Sbjct: 524 AICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSII 583

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y+KC  I+ A + F+   +   D+++WN +I+    H    +   +++ M+++ ++PD
Sbjct: 584 SMYSKCYNIDDAIKAFN--TMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPD 641

Query: 538 LITFLGLLTA--CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
            ITF+ +++A    ++ L++E R +F  MK  +  EP+ EHYAS+V +LG  G ++EA E
Sbjct: 642 AITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEE 701

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           L+  MPF P+  VW  LL  C++H+ T + +  A+ +I MEP +   YVL+SN+YAA+G+
Sbjct: 702 LINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGR 761

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           W+    +R  +RDRGL+K P  SW+ I K +H F+A D+SHPQ++ IY+ L IL L+ ++
Sbjct: 762 WHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYARDKSHPQSNDIYSGLDILILKCLK 821

Query: 716 GRRE 719
              E
Sbjct: 822 AGYE 825


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 305/579 (52%), Gaps = 49/579 (8%)

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
           +  ++ Y  ++ +C         +KIH   +K   ++   V   L   Y+ C     N+ 
Sbjct: 5   FEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSC-----NQV 59

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
            + +R F ++ +     WN +I     NG  + + +L+  M   G   +  T   +L++ 
Sbjct: 60  VLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC 119

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L ++E G  +H  A +     D+ V TAL+  Y+K   L +A+ LF  MS +D V WN
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+     G   ++++L+M M   G   +  T +  + +                    
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT-------------------- 219

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                           C+C  L  ARKIFD +  +  VSWS+MI GYV  D   EAL +F
Sbjct: 220 ----------------CQC--LLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF 261

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             M+L G++ D  T++ +LPAC ++ AL+H    HGY +  G  + + +  A+   Y+KC
Sbjct: 262 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 321

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I  A E+F+  ++D  DI++WN+MI  Y  HG   +   L+  +    ++PD ITF+ 
Sbjct: 322 GKISFAREVFN--RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFIC 379

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           LL++C ++GLV EGR+ F  M   +   P  EH   MV++LGRAG +DEA   +++MPF+
Sbjct: 380 LLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFE 439

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PD R+W  LLSAC++H   EL E  ++K+ S+ PE+ GN+VLLSNIY+AAG+W+  A +R
Sbjct: 440 PDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIR 499

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
              +D GLKK PGCSWIEI  +VH F   DQSH Q   I
Sbjct: 500 ITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 538



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 195/398 (48%), Gaps = 48/398 (12%)

Query: 61  LHQNLILSSNLIDS---------YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           +HQ+ + +++  DS         Y +   + L++++F+ I +P+ +L+  I++  +  G 
Sbjct: 30  IHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGP 89

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           ++  + +Y  M    + P + TYPFV+++CS LL    G +IH+     G +S   V  A
Sbjct: 90  FDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTA 149

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           LV+FY KC    E ++       +D+ + WN++I+     G  + + +L   M+ EG   
Sbjct: 150 LVDFYAKCGILVEAQRLFSSMSHRDVVA-WNAMIAGCSLYGLCDDAVQLIMQMQEEGICP 208

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           +S T++ +L +                      C+ L        +Y        A+ +F
Sbjct: 209 NSSTIVGVLPT----------------------CQCL--------LY--------ARKIF 230

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D M  ++ V W+ MI  Y  S   KE+L++   M  SG   DL T +  + + S +  ++
Sbjct: 231 DVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 290

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            G   H  ++  G      + N+LIDMY +C  ++ AR++F+ +    +VSW++MI GY 
Sbjct: 291 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 350

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            H   +EAL LF ++   G++ D +T I +L +C + G
Sbjct: 351 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 388



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 42/294 (14%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HA+   + GL  ++ + + L+D YA  G+L  +Q++F+S++  + + +  ++   S +G 
Sbjct: 134 HAK---MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
            +  + +  QM  + + P   T   V+ +C CLL      KI        FD        
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLL---YARKI--------FDVM------ 233

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
                     G  NE              W+++I   V +   +++ ++F++M++ G + 
Sbjct: 234 ----------GVRNE------------VSWSAMIGGYVASDCMKEALDIFRMMQLSGIDP 271

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D  T++ +L +   L +L+ G   H   +V  F  D  +  AL+ MYSK   +  A+ +F
Sbjct: 272 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 331

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           ++M   D V WN MI  Y   G   E+L L   ++  G + D  T I  +SS S
Sbjct: 332 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 385


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/667 (29%), Positives = 356/667 (53%), Gaps = 4/667 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   +I  G H    + + L+  Y+    L  ++++F+++ S + + Y +++  L +
Sbjct: 281 EQLHC-LVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ L ++ +M    + P   T   ++ +C+ +     G ++H+  +K G  +   +
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L++ Y KC       K  +  + +++   WN ++    Q      SFE+F+ M+MEG
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLTTETENI-VLWNVMLVAYGQLDNLSDSFEIFRQMQMEG 458

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  T  ++LR+   L +L LG  +H   + + F  ++ V + L+ MY+K   L  A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +  ++ + D V W  MI+ Y Q     E+L+L   M   G + D     +A+S+ + ++
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  G+Q+HA     G    +S++N+LI +Y  C  +  A   F+ +  K  +SW+S++ 
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G        EAL++F  M     EV+  T  + + A  ++  ++  + +H   +K G +S
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V+ ++   YAK G I  A   F++  +  +++I+WN+MI+ Y++HG   +  +L+ +
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFND--MSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK   + P+ +TF+G+L+AC + GLV+EG   F+ M + +   P  EHY  +V+LLGRAG
Sbjct: 757 MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +D A E +K+MP   DA +W  LLSAC +H   E+ E  A  L+ +EPE++  YVL+SN
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           IYA + +W      R  ++DRG+KK PG SWIE+   VH F+A D+ HP  + IY  +G 
Sbjct: 877 IYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGH 936

Query: 709 LELEIME 715
           L     E
Sbjct: 937 LNRRTSE 943



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/596 (24%), Positives = 293/596 (49%), Gaps = 19/596 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-----SITSPNSLLYGTILK 104
           ++H R I   G     +L  +L+D+Y   G    + +VF+     S+ S N +++   + 
Sbjct: 79  RLHCR-ISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIH-VFVA 136

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC-SCLLDFISGEKIHAQVVKLGFD 163
             S F    +   ++++M  + + P   T+  V+++C    + F   +++H++    GFD
Sbjct: 137 QKSNF----QVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFD 192

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           S   V + L++ Y K +G  E+ K +      KD+ + W ++IS   QNG  E++  LF 
Sbjct: 193 SSPLVANLLIDLYSK-NGYIESAKKVFNCICMKDIVT-WVAMISGLSQNGLEEEAILLFC 250

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M           L ++L ++ +++  ELG  +HC+ +   F  +  V   L+++YS+  
Sbjct: 251 DMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSR 310

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L  A+ +F  M+ +D V +N +IS   Q GF   +LEL   M R   + D  T  + +S
Sbjct: 311 KLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS 370

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +++  +  G Q+H++ ++ G    + +  SL+D+Y +C D+  A K F + +T+ +V 
Sbjct: 371 ACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVL 430

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+ M+  Y   D   ++  +F +M++EG+  +  T  +IL  C ++GAL   + +H + +
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K G      V + +   YAK G + +A  +    ++   D+++W +MI+ Y +H  +S+ 
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRIL--RRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +L+ +M+   ++ D I F   ++AC     + +G+ I  +   + G+        ++++
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ-SYAAGFGADLSINNALIS 607

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
           L  R G + EA    + +  K +   W  L+S        E A     +++  E E
Sbjct: 608 LYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 244/492 (49%), Gaps = 14/492 (2%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
            Y +++  C          ++H ++ K GFD    + D+LV+ Y +      ++ G + +
Sbjct: 60  NYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFR----HGDQHGAV-K 114

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK- 247
            F +  +R    WN +I + V    + + F LF+ M  EG   +  T   +L++ V    
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +    + VH       F     V   L+ +YSK   +E AK +F+ +  KD V W  MIS
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q+G  +E++ L   M  S      +   + +S+ + ++  E G+Q+H  V++ G   
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHS 294

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           +  V N L+ +Y     L  A +IF ++ ++  VS++S+I G V    S  AL LF++M+
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            + ++ D +T+ ++L AC ++GAL     LH +++K G+++   +  ++   Y+KC  +E
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A + F     ++++I+ WN M+ AY +  + S  F+++ QM+   + P+  T+  +L  
Sbjct: 415 TAHKFF--LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C + G +  G  I   + ++ G++ +    + ++++  + G +  A  +++ +P + D  
Sbjct: 473 CTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVV 530

Query: 608 VWGPLLSACKMH 619
            W  +++    H
Sbjct: 531 SWTAMIAGYVQH 542



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 6/354 (1%)

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +L ++ GKS K  +L   M   G   +    + LL   +   SL     +HC    S F 
Sbjct: 32  TLHMEQGKS-KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFD 90

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  +  +L+  Y +      A  +FD+ S++    WN MI  +       +   L   M
Sbjct: 91  GEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM 150

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWG--KQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           +  G   + +T  A V       +I +   KQ+H+     G D    V N LID+Y +  
Sbjct: 151 LAEGITPNGYT-FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNG 209

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  A+K+F+ +  K +V+W +MI G   +    EA+ LF +M    +      + ++L 
Sbjct: 210 YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           A   I   E  + LH   +K G +S + V   +   Y++   +  A  +F    ++S+D 
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS--TMNSRDG 327

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +++NS+IS   + G   +  +L+T+M++  ++PD IT   LL+AC + G + +G
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 213/679 (31%), Positives = 363/679 (53%), Gaps = 18/679 (2%)

Query: 37  SLLNLCEN--PQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+L  C +   +H + IHA  ++  G        ++++D Y   G L  +  VF+S+ S 
Sbjct: 55  SILKACSSLPVRHGKSIHAS-LLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSR 113

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +S+ +  ++      G  +K L  ++Q  + +  P   T    I +C  L     G K+H
Sbjct: 114 DSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMH 173

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
             +++ GF     V ++L+  Y       +N+    +  F ++  R    W+ +I   VQ
Sbjct: 174 GYIIRSGFLDIPSVQNSLLSMYA------DNDMERAEELFDEMCERDVISWSVMIGGYVQ 227

Query: 211 NGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            G+++ + +LF  M    + E D  T++++L++      + +GR VH V +      DL 
Sbjct: 228 TGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLF 287

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V  +++ MYSK    E A   F++M  ++ V WN +IS   ++    E+L L   M ++G
Sbjct: 288 VGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAG 347

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           FRAD  T +  + S     +    K +H+ V+R G +    V NSLID Y +C+ +  A 
Sbjct: 348 FRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAW 407

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           K+FD +KTK  VSWS+MI G+    +  EA+ LF EM     + + VTI+++L A     
Sbjct: 408 KLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSA 467

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L+  K+ HG +++ GL +  +V TAI   YAKCG I ++ + FD+  I  K+I++W +M
Sbjct: 468 DLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQ--IPEKNIVSWGAM 525

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+A   +G       L ++MK   ++P+++T L +L+AC + GLVEEG   F+ M + +G
Sbjct: 526 IAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHG 585

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAEL 627
            EP  EHY+ MV++L RAG ++ A  L++ MP   +  A +WG LLSAC+    + L   
Sbjct: 586 VEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAG 645

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A +++ +EP+++  Y L S++YAA+G W   A+MR  ++ RG++   G S + +     
Sbjct: 646 AAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAW 705

Query: 688 EFWAADQSHPQADAIYTIL 706
            F A D+SHP+A  I+ ++
Sbjct: 706 RFVAGDESHPRAGEIWGVV 724



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 4/329 (1%)

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           +  M+  GA+    TL++ +        +  G+ +H   +   F    S   ++L  Y K
Sbjct: 37  YHQMKKAGAQLTDPTLVHSILKACSSLPVRHGKSIHASLLKQGFDSLTSTGNSVLDFYMK 96

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             +L+ A  +FD M  +D V WNIMI  +   G   + L          F  ++ T + A
Sbjct: 97  TGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLA 156

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + +  ++  +E G +MH  ++R+G     SV NSL+ MY +  D+  A ++FD +  + V
Sbjct: 157 IHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDV 215

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHG 459
           +SWS MI GYV   ++  AL+LF EM     +E+D +T++++L AC N G +   + +HG
Sbjct: 216 ISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHG 275

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             +  GL+    V  +I   Y+KC   E A + F+E  +  ++ ++WNS+IS   +    
Sbjct: 276 VVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNE--MPCRNTVSWNSIISGLVRTEKH 333

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           S+   L+  M ++  R D +T + LL +C
Sbjct: 334 SEALSLFYSMGKAGFRADEVTLVNLLQSC 362



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 4/143 (2%)

Query: 416 SLEALRLFSEMKLEGVEVDFVTIIN-ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           S EA   + +MK  G ++   T+++ IL AC ++  + H K +H   +K G +SL+S   
Sbjct: 30  SWEACSRYHQMKKAGAQLTDPTLVHSILKACSSL-PVRHGKSIHASLLKQGFDSLTSTGN 88

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           ++   Y K G ++ A  +FD  +  S+D ++WN MI  +   G   +    + Q +    
Sbjct: 89  SVLDFYMKTGALDSALFVFDSMR--SRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAF 146

Query: 535 RPDLITFLGLLTACVNAGLVEEG 557
            P++ T +  + AC + G +EEG
Sbjct: 147 EPNVSTLVLAIHACRSLGAMEEG 169


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 213/649 (32%), Positives = 353/649 (54%), Gaps = 41/649 (6%)

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           I SY   G  + + +VF  +   +S+ Y  ++    + GE+E    ++ +M      P  
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM------PER 124

Query: 132 D--TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
           D  ++  +I+      +     ++   + +    S++ +     +     +G  ++ + +
Sbjct: 125 DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQ-----NGCVDDARSV 179

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN---LLRSTVEL 246
             R  +     WN+L+S  VQN K E++  LFK         ++  L++   LL   V+ 
Sbjct: 180 FDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK-------SRENWALVSWNCLLGGFVKK 232

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           K +   R       V D    +S NT +++ Y++   +++A+ LFD+   +D   W  M+
Sbjct: 233 KKIVEARQFFDSMNVRDV---VSWNT-IITGYAQSGKIDEARQLFDESPVQDVFTWTAMV 288

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL--RNG 364
           S Y Q+   +E+ EL   M       +  +  A ++     + +E  K++  +V+  RN 
Sbjct: 289 SGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELF-DVMPCRN- 342

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               VS  N++I  Y +C  ++ A+ +FD +  +  VSW++MI GY     S EALRLF 
Sbjct: 343 ----VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           +M+ EG  ++  +  + L  C ++ ALE  K LHG  +K G  +   V  A+ + Y KCG
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            IE A +LF E  +  KDI++WN+MI+ Y++HG      + +  MK+  ++PD  T + +
Sbjct: 459 SIEEANDLFKE--MAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAV 516

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC + GLV++GR  F  M + YG  P+ +HYA MV+LLGRAG +++A  L+K+MPF+P
Sbjct: 517 LSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP 576

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           DA +WG LL A ++H  TELAE  A+K+ +MEPEN+G YVLLSN+YA++G+W  V K+R 
Sbjct: 577 DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRV 636

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            +RD+G+KK PG SWIEI    H F   D+ HP+ D I+  L  L+L +
Sbjct: 637 RMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRM 685



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 222/456 (48%), Gaps = 29/456 (6%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++  YA  G +  ++ VF+ +   N + +  +L    +  + E+  +++K        
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK-------- 212

Query: 129 PAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFDSFD--DV--GDALVEFYIKCDGGF 183
            + + +  V  S +CLL  F+  +KI     +  FDS +  DV   + ++  Y +     
Sbjct: 213 -SRENWALV--SWNCLLGGFVKKKKIVE--ARQFFDSMNVRDVVSWNTIITGYAQSGKID 267

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           E  +   +   +D+ + W +++S  +QN   E++ ELF  M     E +  +   +L   
Sbjct: 268 EARQLFDESPVQDVFT-WTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGY 322

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
           V+ + +E+ + +  V      C+++S    +++ Y++   + +AK LFDKM  +D V W 
Sbjct: 323 VQGERMEMAKELFDVMP----CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWA 378

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI+ Y QSG   E+L L + M R G R +  +  +A+S+ + +  +E GKQ+H  +++ 
Sbjct: 379 AMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG 438

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +    V N+L+ MYC+C  +  A  +F  +  K +VSW++MI GY  H     ALR F
Sbjct: 439 GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFF 498

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAK 482
             MK EG++ D  T++ +L AC + G ++  + Y +  +   G+   S     +     +
Sbjct: 499 ESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGR 558

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            G +E A  L      +  D   W +++ A   HG+
Sbjct: 559 AGLLEDAHNLMKNMPFEP-DAAIWGTLLGASRVHGN 593



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 156/346 (45%), Gaps = 30/346 (8%)

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST-MKNIE 351
           K  D D   WN+ IS+Y ++G   E+L +   M R       +++++    IS  ++N E
Sbjct: 58  KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPR-------WSSVSYNGMISGYLRNGE 110

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +  ++   +     +  +   N +I  Y    +L  AR++F+ +  + V SW++M+ GY 
Sbjct: 111 F--ELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYA 168

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    +A  +F  M     E + V+   +L A V    +E    L        L S + 
Sbjct: 169 QNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN- 223

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
               +   + K   I  A + FD   ++ +D+++WN++I+ YA+ G   +  +L+ +   
Sbjct: 224 ---CLLGGFVKKKKIVEARQFFDS--MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPV 278

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            DV     T+  +++  +   +VEE R +F +M E      ++  + +M+    +   M+
Sbjct: 279 QDV----FTWTAMVSGYIQNRMVEEARELFDKMPER-----NEVSWNAMLAGYVQGERME 329

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
            A+EL   MP + +   W  +++      +   A+   +K+   +P
Sbjct: 330 MAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 121/250 (48%), Gaps = 7/250 (2%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +N+   + +I  YA  G +S ++ +F+ +   + + +  ++   S+ G   + L ++ QM
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             +       ++   + +C+ ++    G+++H ++VK G+++   VG+AL+  Y KC G 
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC-GS 459

Query: 183 FENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            E    + +    KD+ S WN++I+   ++G  E +   F+ M+ EG + D  T++ +L 
Sbjct: 460 IEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518

Query: 242 STVELKSLELGRIVHCVAVVSDF--CKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKD 298
           +      ++ GR  +   +  D+    +      ++ +  +   LEDA  L   M  + D
Sbjct: 519 ACSHTGLVDKGR-QYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPD 577

Query: 299 RVVWNIMISA 308
             +W  ++ A
Sbjct: 578 AAIWGTLLGA 587


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 223/719 (31%), Positives = 378/719 (52%), Gaps = 32/719 (4%)

Query: 1   MLGLLPPACSLQSGHVKFLRFPANQTRPHMTA-----THSFSLLNLCENPQHLQQIHARY 55
           +L  LP   + QS     LRF  N  R  +       T   +L   C  P+  +QIH  +
Sbjct: 45  LLNYLPRDGAFQS-----LRFFKNNFRWGLDGNADEFTLVLALKACCGFPKLGRQIHG-F 98

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  G   ++ +S++L++ Y   G L  +  VF ++  P+ + + TIL   S F + E  
Sbjct: 99  VISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTIL---SGFEKSENA 155

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           L    +M L  +     TY   +  C    +F+ G ++H   +K GF     VG+ALV  
Sbjct: 156 LSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTM 215

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE-KSFELFKLMRMEGAEFDSG 234
           Y + +   +  K   +   +D +  W+++I+   Q G +  ++  +F  M  EG +FD+ 
Sbjct: 216 YSRWEHLVDARKVFDEMPSRD-RVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNV 274

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            +   L      ++LELG+ +HC+AV +      SV   L+S YSK   +EDAK +F+ +
Sbjct: 275 PITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFELI 334

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           +D++ + W  MIS Y +      ++ L   M   G   +  T I  + +I+    +E G 
Sbjct: 335 NDRNVISWTTMISLYEEG-----AVSLFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGL 389

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
            +H   ++     +++V NSLI MY + E +  A ++F  +  + ++SW+++I GY  + 
Sbjct: 390 MVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNALISGYAQNA 449

Query: 415 QSLEALR--LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
              EAL   L++ M+ +  E  F +++N + A  +I +L+H +  H + +K+GLN    +
Sbjct: 450 LCQEALEAFLYAIMEYKPNEYTFGSVLNAISAGEDI-SLKHGQRCHSHLIKVGLNVDPII 508

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
           + A+   YAK G I+ +  +F+E    S+    W ++IS YA+HGD+    KL+ +M++ 
Sbjct: 509 SGALLDMYAKRGSIQESQRVFNETSKQSQ--FAWTALISGYAQHGDYESVIKLFEEMEKE 566

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            ++PD + FL +LTAC    +V+ GR  F  M + +  EP  EHY+ MV++LGRAG ++E
Sbjct: 567 RIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHYSCMVDMLGRAGRLEE 626

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A E++  +P  P       LL AC+ H   E+AE  A  L+  EP  +G YVL+SN+YA 
Sbjct: 627 AEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEPLESGPYVLMSNLYAQ 686

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL------VHEFWAADQSHPQADAIYTI 705
            G W  VAK+R  +R+RG+ K  G SW+++G        +H F + D SHPQ++ I+ +
Sbjct: 687 KGDWEKVAKVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHPQSEEIFRM 745



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE--VDFVTIINILPACVNI 448
           +FD        S++ ++  Y+  D + ++LR F      G++   D  T++  L AC   
Sbjct: 29  LFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADEFTLVLALKACCGF 88

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             L   + +HG+ +  G  S  +V+ ++   Y K G +E A  +F  + +   DI++WN+
Sbjct: 89  PKLG--RQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVF--QNLHDPDIVSWNT 144

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           ++S + K            +M  + V+ D +T+   L+ C++      G  +   +    
Sbjct: 145 ILSGFEKS---ENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQL-HTLALKC 200

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           G++       ++V +  R  H+ +AR++  +MP + D   W  +++ 
Sbjct: 201 GFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSR-DRVSWSAMITG 246


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 215/681 (31%), Positives = 359/681 (52%), Gaps = 35/681 (5%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGL-HQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           +LL  CE    L+    +H  Y + +G+   N  +++ LI  Y    +  L   +F+ + 
Sbjct: 166 ALLLACEGASELRLGRGVHG-YCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMV 223

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + +  ++      G+Y K L ++ QM +  +     T    +++C+ L     G++
Sbjct: 224 VRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQ 283

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH   +K  F     + +AL+  Y   +G  E+   + +         WNS+IS     G
Sbjct: 284 IHQLAIKFEFVEDLYILNALLNMYSN-NGSLESSHQLFESVPNRDAPLWNSMISAYAAFG 342

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS-LELGRIVHCVAVVSDFCKDLSVN 271
             E++ +LF  M+ EG + D  T++ +L    EL S L  G+ +H   + S    D S+ 
Sbjct: 343 CHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLG 402

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            ALLSMY++L  +E  + +FD+M   D + WN MI A  ++    ++ EL   M  S  +
Sbjct: 403 NALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIK 462

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            + +T I+ +++   +  +++G+ +H  V+++  +    +  +L DMY  C D   AR +
Sbjct: 463 PNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDL 522

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+    + ++SW++MI                        E + VTIIN+L +  ++  L
Sbjct: 523 FEGCPDRDLISWNAMIXK---------------------AEPNSVTIINVLSSFTHLATL 561

Query: 452 EHVKYLHGYSMKLGLN---SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
              + LH Y  + G +    LS  N A    YA+CG ++ A  +F  + +  ++II+WN+
Sbjct: 562 PQGQSLHAYVTRRGFSLGLDLSLAN-AFITMYARCGSLQSAENIF--KTLPKRNIISWNA 618

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI+ Y  +G  S     ++QM +   RP+ +TF+ +L+AC ++G +E G  +F  M + +
Sbjct: 619 MIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDF 678

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
              P   HY+ +V+LL R G +DEARE +  MP +PDA VW  LLS+C+ +S+ + A+  
Sbjct: 679 NVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTI 738

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
            EKL  +EP NAGNYVLLSN+YA AG W  V ++RT+L+++GL+K PG SWI +   VH 
Sbjct: 739 FEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHC 798

Query: 689 FWAADQSHPQADAIYTILGIL 709
           F A D+SHPQ+D IY  L IL
Sbjct: 799 FSAGDRSHPQSDKIYAKLSIL 819



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 154/594 (25%), Positives = 295/594 (49%), Gaps = 42/594 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + IH R I    L  ++ + + ++D Y   G +  ++ VF++++  + +L+  ++     
Sbjct: 80  KSIH-RSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-FDSFDD 167
           +G YE+ +L+ ++M  +++ P   T   ++ +C    +   G  +H   ++ G FDS   
Sbjct: 139 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 198

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           V  AL+ FY++ D        ++   F  +  R    WN++IS     G   K+ ELF  
Sbjct: 199 VATALIGFYLRFD------MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQ 252

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M ++  +FD  T++  +++  EL SL+LG+ +H +A+  +F +DL +  ALL+MYS   S
Sbjct: 253 MLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGS 312

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LE +  LF+ + ++D  +WN MISAY   G  +E+++L + M   G + D  T +  +S 
Sbjct: 313 LESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSM 372

Query: 344 ISTMKN-IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
              + + +  GK +HA+V+++G     S+ N+L+ MY E   +   +KIFD +K   ++S
Sbjct: 373 CEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIIS 432

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W++MI     +    +A  LF  M+   ++ +  TII+IL AC ++  L+  + +HGY M
Sbjct: 433 WNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVM 492

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K  +     + TA+   Y  CG    A +LF  E    +D+I+WN+MI            
Sbjct: 493 KHSIEINQPLRTALADMYMNCGDEATARDLF--EGCPDRDLISWNAMI------------ 538

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE---SYGYEPSQEHYAS 579
                        P+ +T + +L++  +   + +G+ +   +     S G + S  +  +
Sbjct: 539 ---------XKAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLAN--A 587

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            + +  R G +  A  + K +P K +   W  +++   M+     A L   +++
Sbjct: 588 FITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNGRGSDAMLAFSQML 640



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 274/548 (50%), Gaps = 20/548 (3%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +++K+ +     +  L  Y QM    + P   T P V+++C+       G+ IH  + 
Sbjct: 28  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 87

Query: 159 KLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
             G D  DD  VG A+V+FY KC  GF  +   +   F  +  R    WN+++   V  G
Sbjct: 88  --GTDLMDDVRVGTAVVDFYCKC--GFVEDARCV---FDAMSDRDVVLWNAMVYGYVGWG 140

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVN 271
             E++  L + M  E    +S T++ LL +      L LGR VH   + +  F  +  V 
Sbjct: 141 CYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVA 200

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           TAL+  Y +   +    +LFD M  ++ V WN MIS YY  G   ++LEL + M+    +
Sbjct: 201 TALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 259

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T + AV + + + +++ GKQ+H   ++      + + N+L++MY     L  + ++
Sbjct: 260 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 319

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA- 450
           F+SV  +    W+SMI  Y       EA+ LF  M+ EGV+ D  T++ +L  C  + + 
Sbjct: 320 FESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASG 379

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   K LH + +K G+   +S+  A+   Y +  C+E   ++FD  ++   DII+WN+MI
Sbjct: 380 LLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFD--RMKGVDIISWNTMI 437

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
            A A++   +Q  +L+ +M++S+++P+  T + +L AC +   ++ GR I   + + +  
Sbjct: 438 LALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK-HSI 496

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           E +Q    ++ ++    G    AR+L +  P + D   W  ++   + +S T +  L++ 
Sbjct: 497 EINQPLRTALADMYMNCGDEATARDLFEGCPDR-DLISWNAMIXKAEPNSVTIINVLSSF 555

Query: 631 KLISMEPE 638
             ++  P+
Sbjct: 556 THLATLPQ 563



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 179/357 (50%), Gaps = 5/357 (1%)

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + KD K  WNS+I         +     +  M   G   ++ TL  +L++     ++E G
Sbjct: 21  QIKDPK-HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 79

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H     +D   D+ V TA++  Y K   +EDA+ +FD MSD+D V+WN M+  Y   
Sbjct: 80  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 139

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSV 371
           G  +E++ L+  M R   R +  T +A + +      +  G+ +H   LRNG  D    V
Sbjct: 140 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHV 199

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +LI  Y    D+     +FD +  + +VSW++MI GY       +AL LF +M ++ V
Sbjct: 200 ATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 258

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           + D VT++  + AC  +G+L+  K +H  ++K        +  A+   Y+  G +E + +
Sbjct: 259 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQ 318

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           LF  E + ++D   WNSMISAYA  G   +   L+ +M+   V+ D  T + +L+ C
Sbjct: 319 LF--ESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 373



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 395 VKTKTVVSWSSMIK--GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           ++ K    W+S+IK    + +DQ++  L  +++M+  GV  +  T+  +L AC    A+E
Sbjct: 20  IQIKDPKHWNSVIKHQANLKNDQAI--LSAYTQMESLGVLPNNTTLPLVLKACAAQNAVE 77

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K +H       L     V TA+   Y KCG +E A  +FD   +  +D++ WN+M+  
Sbjct: 78  RGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFD--AMSDRDVVLWNAMVYG 135

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           Y   G + +   L  +M + ++RP+  T + LL AC  A  +  GR
Sbjct: 136 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGR 181


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 216/690 (31%), Positives = 358/690 (51%), Gaps = 21/690 (3%)

Query: 36  FSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            ++L  C     L Q   IHA +I+  GL    +L++ L+  Y + G ++ +  +F  + 
Sbjct: 132 LAVLKACARLGDLSQGRSIHA-WIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME 190

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
                    I  N ++ G+ +  L ++++M L+ + PA  T    +  C+          
Sbjct: 191 RDLVSWNAAIAAN-AQSGDLDMALELFQRMQLEGVRPARITLVITLSVCA---KIRQARA 246

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH+ V + G +    V  AL   Y +  G  +  K +  R  +     WN+++    Q+G
Sbjct: 247 IHSIVRESGLEQTLVVSTALASAYARL-GHLDQAKEVFDRAAERDVVSWNAMLGAYAQHG 305

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              ++  LF  M  EG      TL+N   ++    SL  GR++H  A+     +D+ +  
Sbjct: 306 HMSEAALLFARMLHEGIPPSKVTLVN---ASTGCSSLRFGRMIHACALEKGLDRDIVLGN 362

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF-- 330
           ALL MY++  S E+A+ LF+ +   + V WN MI+   Q G  K +LEL   M   G   
Sbjct: 363 ALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAP 421

Query: 331 -RADLFTAIAAVSS-ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
            RA     + AV+S     + +  G+++H+ ++  G   + ++  +++ MY  C  ++ A
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEA 481

Query: 389 RKIFDSVKTKT---VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
              F     +    VVSW+++I     H     AL  F  M L GV  + +T + +L AC
Sbjct: 482 AASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDAC 541

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
               AL     +H +    G+ S   V TA+   Y +CG +E A E+F++  ++ +D++ 
Sbjct: 542 AGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVE-RDVVI 600

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           +N+MI+AY+++G   +  KL+ +M+Q   RPD  +F+ +L+AC + GL +EG  IF+ M+
Sbjct: 601 FNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMR 660

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +SYG  PS++HYA  V++LGRAG + +A EL++ M  KP   VW  LL AC+ + + +  
Sbjct: 661 QSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG 720

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
            L    +  ++P +   YV+LSNI A AGKW+  A++RT +  RGL+K  G SWIEI   
Sbjct: 721 RLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSR 780

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME 715
           VHEF A D+SHP+++ IY  L  L  EI E
Sbjct: 781 VHEFVAGDRSHPRSEEIYRELERLHAEIRE 810



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 169/601 (28%), Positives = 301/601 (50%), Gaps = 25/601 (4%)

Query: 23  ANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLG 79
           +  TRP     H   LL    + + L Q   IHAR + L GL + L   ++L+  Y    
Sbjct: 24  SGATRP----AHLVRLLRAAGDDRLLSQGRRIHARIVSL-GLEEEL--GNHLLRLYLKCE 76

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            L   ++VF+ +   +   + TI+   ++ G+ ++ + ++ +M  + +     T+  V++
Sbjct: 77  SLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLK 136

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C+ L D   G  IHA +V+ G +    + + L+  Y  C G   +   + +R  +DL S
Sbjct: 137 ACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSC-GCVASAMLLFERMERDLVS 195

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN+ I+   Q+G  + + ELF+ M++EG      TL+  L    +++     R +H + 
Sbjct: 196 -WNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ---ARAIHSIV 251

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
             S   + L V+TAL S Y++L  L+ AK +FD+ +++D V WN M+ AY Q G   E+ 
Sbjct: 252 RESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAA 311

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   M+  G      T + A +  S+++   +G+ +HA  L  G D  + + N+L+DMY
Sbjct: 312 LLFARMLHEGIPPSKVTLVNASTGCSSLR---FGRMIHACALEKGLDRDIVLGNALLDMY 368

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
             C     AR +F+ +     VSW++MI G     Q   AL LF  M+LEG+     T +
Sbjct: 369 TRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYL 427

Query: 440 NILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           N+L A  +      A+   + LH   +  G  S  ++ TA+   YA CG I+ A   F  
Sbjct: 428 NLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQR 487

Query: 496 EKI-DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             + D  D+++WN++IS+ ++HG   +    + +M    V P+ IT + +L AC  A  +
Sbjct: 488 GAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAAL 547

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            EG I+   ++ S G E +     ++ ++ GR G ++ ARE+ + +  + D  ++  +++
Sbjct: 548 TEGVIVHDHLRHS-GMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIA 606

Query: 615 A 615
           A
Sbjct: 607 A 607



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 235/482 (48%), Gaps = 20/482 (4%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G +IHA++V LG +  +++G+ L+  Y+KC+   + E+   + + +D ++ W ++I+   
Sbjct: 48  GRRIHARIVSLGLE--EELGNHLLRLYLKCESLGDVEEVFSRLEVRD-EASWTTIITAYT 104

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++G+++++  +F  M+ EG   D+ T + +L++   L  L  GR +H   V S       
Sbjct: 105 EHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSV 164

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           +   LL +Y     +  A +LF++M ++D V WN  I+A  QSG    +LEL   M   G
Sbjct: 165 LANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEG 223

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            R      I  V ++S    I   + +H+ V  +G +  + V  +L   Y     L+ A+
Sbjct: 224 VRP---ARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAK 280

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++FD    + VVSW++M+  Y  H    EA  LF+ M  EG+    VT++N    C    
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC---S 337

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L   + +H  +++ GL+    +  A+   Y +CG  E A  LF  E I   + ++WN+M
Sbjct: 338 SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF--EGIPG-NAVSWNTM 394

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGLVEEGRIIFKEMK 565
           I+  ++ G   +  +L+ +M+   + P   T+L LL A  +    A  + EGR +   + 
Sbjct: 395 IAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIV 454

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD--MPFKPDARVWGPLLSACKMHSETE 623
            S GY        ++V +    G +DEA    +   M  + D   W  ++S+   H   +
Sbjct: 455 -SCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGK 513

Query: 624 LA 625
            A
Sbjct: 514 RA 515



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 160/335 (47%), Gaps = 36/335 (10%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+++HA ++  G + ++   N L+ +Y +CE L    ++F  ++ +   SW+++I  Y  
Sbjct: 48  GRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           H Q+  A+ +F  M+ EGV  D VT + +L AC  +G L   + +H + ++ GL   S +
Sbjct: 106 HGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVL 165

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
              +   Y  CGC+  A  LF+  +   +D+++WN+ I+A A+ GD     +L+ +M+  
Sbjct: 166 ANLLLHIYGSCGCVASAMLLFERME---RDLVSWNAAIAANAQSGDLDMALELFQRMQLE 222

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            VRP  IT +  L+ C     + + R I   ++ES G E +     ++ +   R GH+D+
Sbjct: 223 GVRPARITLVITLSVCAK---IRQARAIHSIVRES-GLEQTLVVSTALASAYARLGHLDQ 278

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A+E V D   + D   W  +L A   H     A L   +++                   
Sbjct: 279 AKE-VFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLH------------------ 319

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
                G+   +  L    +  + GCS +  G+++H
Sbjct: 320 ----EGIPPSKVTL----VNASTGCSSLRFGRMIH 346


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 218/689 (31%), Positives = 363/689 (52%), Gaps = 26/689 (3%)

Query: 5   LPPAC-SLQSGHVKFLRFPANQTRPHMTATHS-FSLLNLCENPQHLQQIHARYIILHGLH 62
            PP C S  +     L    + +  H  A+   F LL+ C N   L+Q H   +  +GL 
Sbjct: 15  FPPRCVSFTTIKELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQSHG-VLTGNGLM 73

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            ++ +++ L+  Y   G    ++ VF+ I  P+  L+  +L+      E  + + +Y  +
Sbjct: 74  GDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLL 133

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG-DALVEFYIKCDG 181
                   +  +   +++C+ L D  +G+KIH Q+VK+   SFD+V    L++ Y KC  
Sbjct: 134 MKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKV--PSFDNVVLTGLLDMYAKC-- 189

Query: 182 GFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR---MEGAEFDSG 234
               E     + F D+  R    W S+I+  V+N   E+   LF  MR   + G E+  G
Sbjct: 190 ---GEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYG 246

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           TLI    +  +L +L  G+  H   V S       + T+LL MY K   + +A+ +F++ 
Sbjct: 247 TLI---MACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH 303

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           S  D V+W  MI  Y  +G   E+L L   M     + +  T  + +S    ++N+E G+
Sbjct: 304 SHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGR 363

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
            +H   ++ G  +  +V N+L+ MY +C     A+ +F+    K +V+W+S+I G+  + 
Sbjct: 364 SVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNG 422

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN- 473
              EAL LF  M  E V  + VT+ ++  AC ++G+L     LH YS+KLG  + SSV+ 
Sbjct: 423 SIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHV 482

Query: 474 -TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            TA+   YAKCG  + A  +FD   I+ K+ ITW++MI  Y K GD     +L+ +M + 
Sbjct: 483 GTALLDFYAKCGDPQSARLIFD--TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKK 540

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
             +P+  TF  +L+AC + G+V EG+  F  M + Y + PS +HY  MV++L RAG +++
Sbjct: 541 QQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQ 600

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A ++++ MP +PD R +G  L  C MHS  +L E+  +K++ + P++A  YVL+SN+YA+
Sbjct: 601 ALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYAS 660

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            G+WN   ++R  ++ RGL K  G S +E
Sbjct: 661 DGRWNQAKEVRNLMKQRGLSKIAGHSTME 689


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 200/667 (29%), Positives = 358/667 (53%), Gaps = 16/667 (2%)

Query: 44  NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
            P     +HA  +    LH +  L+++++  Y       L++ +F+   SP   L   +L
Sbjct: 17  TPLAAAHLHANLLRSGLLHSSHHLTAHVLAWYPP----GLARDLFDEFPSPTPRLANALL 72

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
           +   +  ++   +L+  ++ ++       T+  ++R+C+ L     G  +HA  ++    
Sbjct: 73  RAHIRARQWRAAILLGPRLRVRL---DGFTFSLLLRACAALPSLAHGRAVHAVAIRSCTA 129

Query: 164 SFDD-VGDALVEFYIKCDG--GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           S D  V  A+V+ Y +C    G  N  G++++    L++   S+++   QNG +E++ E 
Sbjct: 130 SEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRT---SVVTGYEQNGMAEEALEF 186

Query: 221 F-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           F + +  +G      TL++ + +  +L  +  G+  H   V +    DL++   +LS Y 
Sbjct: 187 FARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYV 246

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K+   + +  LF+ M+D+D + W+ MI  Y Q G   E L +   MV++  + +  T ++
Sbjct: 247 KIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVS 306

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            + + + + + E GK++H   +  G + +V V  +L+DMY +C     A  +F  +  K 
Sbjct: 307 VLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRMPKKD 366

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           VV+W+++I G   ++   E+L +F  M L+    D +T++ +L AC   G       LHG
Sbjct: 367 VVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFGGTRLAICLHG 426

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           Y ++ G N+ + V  A+   Y+KCG I+ A  +F  E    KDI+ W SMI+ Y  HG  
Sbjct: 427 YLVRNGFNNNAFVAAALLDLYSKCGDIDSAVRVF--EGTTEKDIVVWGSMIAGYGAHGLG 484

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +   LY +M  S ++P+ +TF+ +L+AC ++GLV+EG  IF  M + +G  P+ EH ++
Sbjct: 485 QEAVALYQRMIASSIQPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSA 544

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           MV+LLGRAG + EA   ++ M  +  A  W  LL+AC+ H+ T+++++ A+ L+ ++P++
Sbjct: 545 MVDLLGRAGELQEAIRFIRGMDGRAVAHTWCALLAACREHNNTKMSKVAAKSLLKLDPDH 604

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
            G Y LL+NIYA   KW  V   R  +R R L+K PG S +E+G LVH F A +++H   
Sbjct: 605 VGYYNLLTNIYAYDEKWESVKDTRDMVRGRDLRKVPGYSSVEVGNLVHTFIAGERTHQDW 664

Query: 700 DAIYTIL 706
           D I T+L
Sbjct: 665 DNICTLL 671


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 206/664 (31%), Positives = 349/664 (52%), Gaps = 5/664 (0%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH   ++  G  Q++ + ++LID Y     +  ++ +F+ +    S  + TI+   SK 
Sbjct: 162 QIHG-LVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQ 220

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G  + +L ++ QM    + P +     V+ +C  L     G++IH  V++ G      + 
Sbjct: 221 GRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMV 280

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           +  ++FY KC    +  + +  R        W ++I+  +QN     + +LF  M   G 
Sbjct: 281 NGFIDFYFKCHK-VQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGW 339

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             D+    ++L S   L +LE GR VH  A+  +   D  V   L+ MY+K  SL DA+ 
Sbjct: 340 NPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARK 399

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F+ M+  D V +N MI  Y +     E+L+L   M  S     L   ++ +   +++ +
Sbjct: 400 VFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYH 459

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E   Q+H  +++ G        ++LID+Y +C  +  AR +F+ ++ K +V W++M  G
Sbjct: 460 LELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSG 519

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y    ++ E+L+L+  +++  ++ +  T   ++ A  NI +L H +  H   +K+G +  
Sbjct: 520 YTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDD 579

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             V   +   YAK G IE A + F     + KD   WNSMI+ YA+HG+  +  +++  M
Sbjct: 580 PFVANTLVDMYAKSGSIEEAHKAFIS--TNWKDTACWNSMIATYAQHGEAEKALQVFEDM 637

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
               ++P+ +TF+G+L+AC + GL++ G   F  M + +G EP  EHY  MV+LLGRAG 
Sbjct: 638 IMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ-FGIEPGIEHYVCMVSLLGRAGK 696

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + EA+E ++ MP K  A VW  LLSAC++    EL    AE  IS  P ++G+YVLLSNI
Sbjct: 697 LYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNI 756

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +A+ G W  V ++R  +   G+ K PGCSWIE+   +H+F A D +H  +  I  +L  L
Sbjct: 757 FASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNL 816

Query: 710 ELEI 713
            L+I
Sbjct: 817 LLQI 820



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/622 (26%), Positives = 319/622 (51%), Gaps = 18/622 (2%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           L NL ++P H+   ++IH++ I++ G H+ ++ L + L+ +Y+ L L++ + ++F++++ 
Sbjct: 45  LANLLQSP-HIPCCKKIHSK-IVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSH 102

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQ-MALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            N + + +++   +      + L+++ Q M   +  P E     V+R+C+         +
Sbjct: 103 KNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQ 162

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH  VVK G+     V  +L++FY K     ++ + +           W ++I+   + G
Sbjct: 163 IHGLVVKGGYVQDVYVCTSLIDFYTK-HACIDDARLLFDGLQVKTSFTWTTIIAGYSKQG 221

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           +S+ S +LF  M+      D   L ++L + + LK LE G+ +HC  + S    D+S+  
Sbjct: 222 RSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVN 281

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
             +  Y K   ++  + LFD+M DK+ V W  +I+   Q+ F +++L+L + M R G+  
Sbjct: 282 GFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNP 341

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D F   + ++S  ++  +E G+Q+HA  ++   D    V N LIDMY +C+ L  ARK+F
Sbjct: 342 DAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVF 401

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + +    +VS+++MI+GY   D+  EAL LF EM+L       +  +++L    ++  LE
Sbjct: 402 NLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLE 461

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
               +HG  +K G++      +A+   Y+KC  +  A  +F+E  I  KDI+ W +M S 
Sbjct: 462 LSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEE--IQDKDIVVWTAMFSG 519

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y +  +  +  KLY  ++ S ++P+  TF  ++TA  N   +  G+    ++ +  G++ 
Sbjct: 520 YTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIK-MGFDD 578

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
                 ++V++  ++G ++EA +      +K D   W  +++    H E E A    E +
Sbjct: 579 DPFVANTLVDMYAKSGSIEEAHKAFISTNWK-DTACWNSMIATYAQHGEAEKALQVFEDM 637

Query: 633 I--SMEPENAGNYVLLSNIYAA 652
           I   ++P    NYV    + +A
Sbjct: 638 IMEGLKP----NYVTFVGVLSA 655



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 238/474 (50%), Gaps = 11/474 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIH  Y++  G+  ++ + +  ID Y     + L +++F+ +   N + + T++    +
Sbjct: 262 KQIHC-YVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQ 320

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
              +   L ++ +MA     P       V+ SC  L+    G ++HA  +K+  D+ D V
Sbjct: 321 NSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFV 380

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            + L++ Y KCD   +  K        DL S +N++I    +  K  ++ +LF+ MR+  
Sbjct: 381 KNGLIDMYAKCDSLTDARKVFNLMAAIDLVS-YNAMIEGYSRQDKLCEALDLFREMRLSL 439

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           +       ++LL  +  L  LEL   +H + +      D    +AL+ +YSK + + DA+
Sbjct: 440 SSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDAR 499

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           ++F+++ DKD VVW  M S Y Q    +ESL+L  C+  S  + + FT  A +++ S + 
Sbjct: 500 LVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIA 559

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           ++  G+Q H  V++ G D    V N+L+DMY +   +  A K F S   K    W+SMI 
Sbjct: 560 SLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIA 619

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL----EHVKYLHGYSMKL 464
            Y  H ++ +AL++F +M +EG++ ++VT + +L AC + G L    +H   +  + ++ 
Sbjct: 620 TYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEP 679

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           G+     + + +     + G +  A E  ++  I    ++ W S++SA    G+
Sbjct: 680 GIEHYVCMVSLL----GRAGKLYEAKEFIEKMPIKQAAVV-WRSLLSACRVSGN 728


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 308/547 (56%), Gaps = 34/547 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WNSLIS  V  G   ++ + +  M  +G    +  T   +L        ++LGR +H   
Sbjct: 105 WNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQI 164

Query: 260 VVSDFCKDLSVNTALLSMYSKLA-------------------------------SLEDAK 288
           V   F   + V ++L+ MY+K+                                 ++D+K
Sbjct: 165 VKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSK 224

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LF  M ++D + W  MI+   Q+G   E+++L   M + G   D +T  + +++   ++
Sbjct: 225 RLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLR 284

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            ++ GK++H  ++R+G ++ V V ++L+DMYC+C  +  A  +F  +  K VVSW++M+ 
Sbjct: 285 ALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLV 344

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY  +  S EA+R+F +M+  G+E D  T+ +++ +C N+ +LE     H  ++  GL S
Sbjct: 345 GYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLIS 404

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             +V+ A+   Y KCG IE + +LFDE  +  +D ++W +++S YA+ G  ++   L+ +
Sbjct: 405 FITVSNALITLYGKCGSIEDSNQLFDE--MSFRDEVSWTALVSGYAQFGKANETIDLFER 462

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M    ++PD +TF+ +L+AC  AGLVE G+  F+ M + +G  P  +HY  M++L GRAG
Sbjct: 463 MLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAG 522

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            ++EA+  +  MPF PD+  W  LLS+C+++   E+ +  AE L+ ++P+N   Y+LLS+
Sbjct: 523 RLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSS 582

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           IYAA GKW+ VA++R  +R++G +K PG SWI+    V+ F A DQS P +D IY  L  
Sbjct: 583 IYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEK 642

Query: 709 LELEIME 715
           L  +++E
Sbjct: 643 LNHKMIE 649



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/541 (26%), Positives = 261/541 (48%), Gaps = 65/541 (12%)

Query: 42  CENPQHLQQIHARYIILHGL-HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG 100
           CE     Q      +I+  L +    L +NLI++Y+ LG ++ ++ VF+ +  PNS  + 
Sbjct: 16  CETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWN 75

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQ----------------SMYPAEDTYPFVIR----- 139
           T+L   SK G+      ++  M  +                S+  A  TY  +++     
Sbjct: 76  TMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLN 135

Query: 140 ----SCSCLLDFIS-------GEKIHAQVVKLGFDSFDDVGDALVEFYIK------CDGG 182
               + S +L  +S       G +IH Q+VK GF ++  VG +LV+ Y K          
Sbjct: 136 LNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQV 195

Query: 183 FEN-----------------EKGMI---QRKFKDLKSR----WNSLISLAVQNGKSEKSF 218
           F+                    GM+   +R F  +K R    W ++I+  +QNG   ++ 
Sbjct: 196 FDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAM 255

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
           +LF+ MR EG   D  T  ++L +   L++L+ G+ +H + + S +  ++ V +AL+ MY
Sbjct: 256 DLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMY 315

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
            K  S+  A+ +F +M++K+ V W  M+  Y Q+GF +E++ +   M R+G   D FT  
Sbjct: 316 CKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLG 375

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           + +SS + + ++E G Q H   L +G    ++V N+LI +Y +C  +  + ++FD +  +
Sbjct: 376 SVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFR 435

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYL 457
             VSW++++ GY    ++ E + LF  M ++G++ D VT I +L AC   G +E   +Y 
Sbjct: 436 DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYF 495

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
                  G+   S   T +   + + G +E A    ++    S D I W +++S+   +G
Sbjct: 496 ESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPF-SPDSIGWATLLSSCRLYG 554

Query: 518 D 518
           +
Sbjct: 555 N 555



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 222/492 (45%), Gaps = 69/492 (14%)

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           E ++    + +HC+ + S    +  +   L++ YSKL ++  A+ +FDKM   +   WN 
Sbjct: 17  ETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNT 76

Query: 305 MISAYYQSG-----------FPK--------------------ESLELLMCMVRSG-FRA 332
           M+SAY +SG            P                     E+++    M++ G    
Sbjct: 77  MLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL 136

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           +  T    +  +S+   ++ G+Q+H  +++ G    V V +SL+DMY +   ++ A ++F
Sbjct: 137 NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVF 196

Query: 393 DSVKTKTVV-------------------------------SWSSMIKGYVTHDQSLEALR 421
           D V+ + VV                               SW++MI G + +    EA+ 
Sbjct: 197 DEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMD 256

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF +M+ EG+ +D  T  ++L AC  + AL+  K +H   ++ G N    V +A+   Y 
Sbjct: 257 LFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYC 316

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KC  +  A  +F  +++ +K++++W +M+  Y ++G   +  +++  M+++ + PD  T 
Sbjct: 317 KCRSVRYAEAVF--KRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTL 374

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             ++++C N   +EEG     +   S G         +++ L G+ G ++++ +L  +M 
Sbjct: 375 GSVISSCANLASLEEGAQFHCQALVS-GLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 602 FKPDARVWGPLLSA-CKMHSETELAELTAEKLI-SMEPENAGNYVLLSNIYAAAGKWNGV 659
           F+ D   W  L+S   +     E  +L    L+  ++P+      +LS    A     G 
Sbjct: 434 FR-DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492

Query: 660 AKMRTFLRDRGL 671
               + L+D G+
Sbjct: 493 QYFESMLKDHGI 504



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 21/284 (7%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C   + L++   IH   II  G + N+ + S L+D Y     +  ++ VF  + +
Sbjct: 275 SVLTACGGLRALKEGKEIHT-LIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMAN 333

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  +L    + G  E+ + V+  M    + P + T   VI SC+ L     G + 
Sbjct: 334 KNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQF 393

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNG 212
           H Q +  G  SF  V +AL+  Y KC G  E+   +  +  F+D  S W +L+S   Q G
Sbjct: 394 HCQALVSGLISFITVSNALITLYGKC-GSIEDSNQLFDEMSFRDEVS-WTALVSGYAQFG 451

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV-------HCVAVVSDFC 265
           K+ ++ +LF+ M ++G + D+ T I +L +      +E G+         H +   SD  
Sbjct: 452 KANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDH- 510

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
                 T ++ ++ +   LE+AK   +KM    D + W  ++S+
Sbjct: 511 -----YTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSS 549


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/580 (34%), Positives = 332/580 (57%), Gaps = 14/580 (2%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           + Y  +I  C+      + + +H  ++K G   F   G  L++ YIKC    E  K    
Sbjct: 2   NCYTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARK---- 56

Query: 192 RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
             F ++ +R    WNS+IS  V  GK++++ EL+  M  EG   D+ T   + ++  E+ 
Sbjct: 57  -LFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMG 115

Query: 248 SLELGRIVHCVAVVSDF-CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
               G+  H +AVV  F   D  V T ++ MY+K   ++DA+ +FD++ DKD V++  +I
Sbjct: 116 VSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALI 175

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
             Y Q G   E+LE+   MV S  + + +T  + + S   + ++  GK +H  V++ G +
Sbjct: 176 VGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLE 235

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V+   SL+ MY +C  +  + K+F+S+   + V+W+S I G V + +   AL +F EM
Sbjct: 236 SVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREM 295

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
               +  +  T+ +IL AC ++  LE  + +H  ++KLG++    V+ A+   Y KCG +
Sbjct: 296 MRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNV 355

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           E A  +FD   +   DI++ N+MI AYA++G   +  +L+ ++K+  + P+++TF+ +L 
Sbjct: 356 EKARSVFDS--LTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILL 413

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC NAGLVEEG  IF  ++ ++  E +++HY  M++LLGRA   +EA  L+++    PD 
Sbjct: 414 ACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGK-NPDV 472

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
             W  LL+ACK+H E E+AE   +K++   P + G ++LL+NIYA+AGKW+ V +M++  
Sbjct: 473 IQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAG 532

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           RD  LKKTP  SW++I + VH F A D SHP+A  I  +L
Sbjct: 533 RDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEML 572



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 246/510 (48%), Gaps = 34/510 (6%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNL--------IDSYANLGLLSLSQQVF 88
           SL+  C N + L         L  LH +++ S +L        ID Y    +++ ++++F
Sbjct: 6   SLIAQCTNKKSLTT-------LKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLF 58

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + + + + + + +++ +    G+ ++ + +Y  M  + + P   T+  + ++ S +    
Sbjct: 59  DEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSR 118

Query: 149 SGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            G+K H   V LGF+  D  V   +V+ Y K  G  ++ + +  R        + +LI  
Sbjct: 119 EGQKAHGLAVVLGFEVSDGFVATGIVDMYAKF-GKMKDARFVFDRVLDKDVVLFTALIVG 177

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             Q+G   ++ E+F+ M     + +  TL ++L S   L  L  G+++H + V       
Sbjct: 178 YNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESV 237

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           ++  T+LL+MYSK   +ED+  +F+ ++    V W   I    Q+G  + +L +   M+R
Sbjct: 238 VASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMR 297

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                + FT  + + + S++  +E G+Q+HA  ++ G D    V  +LI +Y +C ++  
Sbjct: 298 CSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEK 357

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           AR +FDS+    +VS ++MI  Y  +    EAL LF  +K  G+E + VT I+IL AC N
Sbjct: 358 ARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNN 417

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC-IEMAG--ELFDE-----EKID 499
            G +E             + SL   N +I ++     C I++ G  + F+E     E+  
Sbjct: 418 AGLVEE---------GCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGK 468

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           + D+I W ++++A   HG+     K   +M
Sbjct: 469 NPDVIQWRTLLNACKIHGEVEMAEKFMKKM 498


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 367/670 (54%), Gaps = 24/670 (3%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           I+  G   +L  ++ L+++Y   G    +  +F+ +   N++ Y T+ +  +     +  
Sbjct: 75  ILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQDP 130

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK------IHAQVVKLGFDSFDDVG 169
           + +Y ++  +      +  P V  S   L  F+S +K      +H+ +VKLG+DS   VG
Sbjct: 131 VGLYSRLHRE----GHELNPHVFTSF--LKLFVSLDKAEICWWLHSPIVKLGYDSNAFVG 184

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            AL+  Y  C G  ++ + + +         W  ++S  V+NG  E S +L   M M+G 
Sbjct: 185 AALINAYSVC-GSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGF 243

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             ++ T    L++++ L +    + VH   + + +  D  V   LL +Y++L  + DA  
Sbjct: 244 MPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFK 303

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSISTMK 348
           +F++M   D V W+ MI+ + Q+GF  +++++ + M R GF   + FT  + ++  +  K
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRM-REGFVVPNEFTLSSILNGCAIGK 362

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
               G+Q+H  V++ G D  V V N+LID+Y +CE ++ A K+F  + +K VVSW+++I 
Sbjct: 363 CSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIV 422

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY    +  +AL +F E     V V  VT  + L AC ++ ++E    +HG ++K     
Sbjct: 423 GYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAK 482

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             +V+ ++   YAKCG I++A  +F+E  +++ D+ +WN++IS Y+ HG   Q  +++  
Sbjct: 483 RVAVSNSLIDMYAKCGDIKVAQTVFNE--METIDVASWNALISGYSTHGLGRQALRIFDI 540

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK SD +P+ +TFLG+L+ C NAGL+++G+  F+ M   +G EP  EHY  MV L GR+G
Sbjct: 541 MKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSG 600

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +D+A  L++ +P++P   +W  +LSA       E A  +AE+++ + P++   YVLLSN
Sbjct: 601 QLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSN 660

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YA A +W  VA +R  ++++G+KK PG SWIE    VH F      HP    +  I G+
Sbjct: 661 MYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPD---MKLINGM 717

Query: 709 LELEIMEGRR 718
           LE   M+  R
Sbjct: 718 LEWLNMKATR 727



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 235/500 (47%), Gaps = 19/500 (3%)

Query: 126 SMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDG 181
           S+ P  D++ +  ++R C    D +S + IH  ++K G   D F    + L+  Y+K   
Sbjct: 42  SVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLF--ATNILLNAYVK--A 97

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           GF+ +   +   F ++  R N       Q    +    L+  +  EG E +     + L+
Sbjct: 98  GFDKDALNL---FDEMPERNNVSYVTLTQGYACQDPVGLYSRLHREGHELNPHVFTSFLK 154

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
             V L   E+   +H   V   +  +  V  AL++ YS   S++ A+ +F+ +  KD VV
Sbjct: 155 LFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVV 214

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W  ++S Y ++G  ++SL+LL  M   GF  + +T   A+ +   +    + K +H  +L
Sbjct: 215 WAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQIL 274

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           +   +    V   L+ +Y +  D++ A K+F+ +    VV WS MI  +  +    +A+ 
Sbjct: 275 KTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVD 334

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYLHGYSMKLGLNSLSSVNTAIFISY 480
           +F  M+   V  +  T+ +IL  C  IG    + + LHG  +K+G +    V+ A+   Y
Sbjct: 335 IFIRMREGFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVY 393

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           AKC  ++ A +LF E  + SK++++WN++I  Y   G+  +   ++ +  ++ V    +T
Sbjct: 394 AKCEKMDTAVKLFAE--LSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVT 451

Query: 541 FLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           F   L AC +   +E G  +    +K +     +  +  S++++  + G +  A+ +  +
Sbjct: 452 FSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSN--SLIDMYAKCGDIKVAQTVFNE 509

Query: 600 MPFKPDARVWGPLLSACKMH 619
           M    D   W  L+S    H
Sbjct: 510 ME-TIDVASWNALISGYSTH 528


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/516 (36%), Positives = 298/516 (57%), Gaps = 32/516 (6%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-----------------CK 266
           M + GA  D+     +L++   L+ L+ G  +H  AV   +                 C 
Sbjct: 83  MTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCG 142

Query: 267 DLS----VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            +      N AL++MY+KL  ++D+K LF+   D+D V WN MIS++ QS    E+L   
Sbjct: 143 GIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 202

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCE 381
             MV  G   D  T  + + + S ++ ++ GK++HA VLRN    + S V ++L+DMYC 
Sbjct: 203 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCN 262

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIIN 440
           C  +   R++FD +  + +  W++MI GY  +    +AL LF EM K+ G+  +  T+ +
Sbjct: 263 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322

Query: 441 ILPACVN-IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++PACV+ + A+   K +H Y+++  L S  +V +A+   YAKCGC+ ++  +F+E  + 
Sbjct: 323 VMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE--MP 380

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQM-----KQSDVRPDLITFLGLLTACVNAGLV 554
           +K++ITWN +I A   HG   +  +L+  M     +  + +P+ +TF+ +  AC ++GL+
Sbjct: 381 NKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLI 440

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLL 613
            EG  +F  MK  +G EP+ +HYA +V+LLGRAG ++EA ELV  MP + D    W  LL
Sbjct: 441 SEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLL 500

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            AC++H   EL E+ A+ L+ +EP  A +YVLLSNIY++AG WN   ++R  +R  G+KK
Sbjct: 501 GACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKK 560

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            PGCSWIE    VH+F A D SHPQ++ ++  L  L
Sbjct: 561 EPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETL 596



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 139/528 (26%), Positives = 243/528 (46%), Gaps = 68/528 (12%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           L++ ++  ++ + +  Y +M +    P    +P V+++ S L D  +GE+IHA  VK G+
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 163 DSFD-DVGDALVEFYIKCDG----GFENEKGMI-----------QRKFKDLKSR----WN 202
            S    V + LV  Y KC G     F N   M            +  F+    R    WN
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWN 183

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAVV 261
           ++IS   Q+ +  ++   F+LM +EG E D  T+ ++L +   L+ L++G+ +H  V   
Sbjct: 184 TMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN 243

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           +D  ++  V +AL+ MY     +E  + +FD +  +   +WN MIS Y ++G  +++L L
Sbjct: 244 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 303

Query: 322 LMCMVRSGFRADLFTAIAAV--SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            + M++        T +A+V  + + ++  I  GK++HA  +RN     ++V ++L+DMY
Sbjct: 304 FIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMY 363

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-----VEVD 434
            +C  LN +R++F+ +  K V++W+ +I     H +  EAL LF  M  E       + +
Sbjct: 364 AKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPN 423

Query: 435 FVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
            VT I +  AC + G + E +   +      G+   S     +     + G +E A EL 
Sbjct: 424 EVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELV 483

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
                        N+M + + K G WS                       LL AC     
Sbjct: 484 -------------NTMPAEFDKVGAWSS----------------------LLGACRIHQN 508

Query: 554 VEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM 600
           VE G +  K +      EP+   HY  + N+   AG  ++A E+ K+M
Sbjct: 509 VELGEVAAKNLLH---LEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 553



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 189/381 (49%), Gaps = 35/381 (9%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G+      ++ L+  YA LG +  S+ +F S    + + + T++ + S+   + + L  +
Sbjct: 143 GIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 202

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK---LGFDSFDDVGDALVEFY 176
           + M L+ +     T   V+ +CS L     G++IHA V++   L  +SF  VG ALV+ Y
Sbjct: 203 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSF--VGSALVDMY 260

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF-KLMRMEGAEF 231
             C    + E G  +R F  +  R    WN++IS   +NG  EK+  LF +++++ G   
Sbjct: 261 CNCR---QVESG--RRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLP 315

Query: 232 DSGTLINLLRSTVE-LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
           ++ T+ +++ + V  L ++  G+ +H  A+ +    D++V +AL+ MY+K   L  ++ +
Sbjct: 316 NTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRV 375

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-----------DLFTAIA 339
           F++M +K+ + WN++I A    G  +E+LEL   MV    R             +F A +
Sbjct: 376 FNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 435

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK- 398
               IS   N+ + +  H + +   SD+   V    +D+      L  A ++ +++  + 
Sbjct: 436 HSGLISEGLNLFY-RMKHDHGVEPTSDHYACV----VDLLGRAGQLEEAYELVNTMPAEF 490

Query: 399 -TVVSWSSMIKGYVTHDQSLE 418
             V +WSS++     H Q++E
Sbjct: 491 DKVGAWSSLLGACRIH-QNVE 510



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 14/203 (6%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C + + L   ++IHA  +  + L +N  + S L+D Y N   +   ++VF+ I  
Sbjct: 219 SVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILG 278

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFIS-GE 151
               L+  ++   ++ G  EK L+++ +M  +  + P   T   V+ +C   L  I+ G+
Sbjct: 279 RRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGK 338

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISL 207
           +IHA  ++    S   VG ALV+ Y KC  G  N   + +R F ++ ++    WN LI  
Sbjct: 339 EIHAYAIRNMLASDITVGSALVDMYAKC--GCLN---LSRRVFNEMPNKNVITWNVLIMA 393

Query: 208 AVQNGKSEKSFELFKLMRMEGAE 230
              +GK E++ ELFK M  E   
Sbjct: 394 CGMHGKGEEALELFKNMVAEAGR 416



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
           +++  SW   ++     +   EA+  + EM + G   D      +L A   +  L+  + 
Sbjct: 54  SRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 457 LHGYSMKLGLNSLSS---------------------VNTAIFISYAKCGCIEMAGELFDE 495
           +H  ++K G  S S                       N A+   YAK G ++ +  LF  
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF-- 171

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           E    +D+++WN+MIS++++   +S+    +  M    V  D +T   +L AC +   ++
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 556 EGRII 560
            G+ I
Sbjct: 232 VGKEI 236



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 41/212 (19%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IHA Y I + L  ++ + S L+D YA  G L+LS++VFN + + N + +  ++     
Sbjct: 338 KEIHA-YAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGM 396

Query: 109 FGEYEKTLLVYKQMALQS-----MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
            G+ E+ L ++K M  ++       P E T+  V  +CS           H+ ++  G +
Sbjct: 397 HGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS-----------HSGLISEGLN 445

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
            F         + +K D G E                +  ++ L  + G+ E+++EL   
Sbjct: 446 LF---------YRMKHDHGVE-----------PTSDHYACVVDLLGRAGQLEEAYELVNT 485

Query: 224 MRMEGAEFDS-GTLINLLRSTVELKSLELGRI 254
           M    AEFD  G   +LL +    +++ELG +
Sbjct: 486 MP---AEFDKVGAWSSLLGACRIHQNVELGEV 514


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 209/639 (32%), Positives = 351/639 (54%), Gaps = 12/639 (1%)

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           L ++VF+++   N + + T++    K     +   +++ M    + P   ++  V  +  
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVW 229

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
            + D+ +   ++  VVKLG D  DD  V  + +  Y +  G  +  + +     +     
Sbjct: 230 RMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAEL-GCVDFAREIFDCCLERNTEV 288

Query: 201 WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++I   VQN    ++ +LF ++M  E    D  T ++ L +  +L+ LELGR +H   
Sbjct: 289 WNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYI 348

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + S     + +  A++ MYS+  S+  +  +F  M ++D V WN M+SA+ Q+G   E L
Sbjct: 349 LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGL 408

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L+  M + GF  D  T  A +S  S +++ E GKQ HA ++R+G  ++  + + LIDMY
Sbjct: 409 MLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMY 467

Query: 380 CECEDLNCARKIF--DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            +   +  A+++F  +S   +   +W++MI GY  +  S E   +F +M  + V  + VT
Sbjct: 468 AKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVT 527

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + +ILPAC  +G +   K +HG++++  LN    V TA+   Y+K G I  A  +F E  
Sbjct: 528 LASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETL 587

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
              K+ +T+ +MIS+Y +HG   +   L+  M  S ++PD +TF+ +L+AC  AGLV+EG
Sbjct: 588 --EKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEG 645

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLLSAC 616
             IF+ M+  Y  +PS EHY  + ++LGR G + EA E VK +  + +   +WG LL AC
Sbjct: 646 LRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGAC 705

Query: 617 KMHSETELAELTAEKLISMEPENA--GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
           ++H E EL ++ A KL+ ME  ++  G +VLLSNIYAA G W+ V ++R  +R +GL K 
Sbjct: 706 RIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKE 765

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            GCSW+E+   V+ F + D  HPQ   IY +L  L +E+
Sbjct: 766 AGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEM 804



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 225/471 (47%), Gaps = 26/471 (5%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++I   + N     +   +  MR   + +FDS T  + L++  + +SL+LG+ +HC  
Sbjct: 71  WNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHV 130

Query: 260 VVSDFCKDLSVNTALLSMYSK-------LASLED------AKMLFDKMSDKDRVVWNIMI 306
           + S F     V  +LL+MYS        L +  D       + +FD M  ++ V WN MI
Sbjct: 131 LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMI 190

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S Y ++    E+ ++   M+R G R    + +    ++  M + +    ++  V++ GSD
Sbjct: 191 SWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSD 250

Query: 367 Y--QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           +     V +S I MY E   ++ AR+IFD    +    W++MI GYV ++  +EA+ LF 
Sbjct: 251 FVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFV 310

Query: 425 E-MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           + M+ E   +D VT ++ L A   +  LE  + LH Y +K        +  AI + Y++C
Sbjct: 311 QVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRC 370

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I  + ++F    +  +D++TWN+M+SA+ ++G   +   L   M++     D +T   
Sbjct: 371 GSIGTSFKVFS--NMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTA 428

Query: 544 LLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELV-KDMP 601
           LL+   N    E G+     + +    +E    +   ++++  ++G +  A++L  K+  
Sbjct: 429 LLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY---LIDMYAKSGLITTAQQLFEKNSD 485

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           +  D   W  +++    +  +E       K+I  E     N V L++I  A
Sbjct: 486 YDRDEATWNAMIAGYTQNGLSEEGFAVFRKMI--EQNVRPNAVTLASILPA 534



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 191/395 (48%), Gaps = 11/395 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +  + S+ I  YA LG +  ++++F+     N+ ++ T++    +     + + ++ Q+ 
Sbjct: 254 DFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVM 313

Query: 124 LQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG- 181
               +  +D T+   + + S L     G ++HA ++K        + +A++  Y +C   
Sbjct: 314 ESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSI 373

Query: 182 --GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
              F+    M++R   D+ + WN+++S  VQNG  ++   L   M+ +G   DS TL  L
Sbjct: 374 GTSFKVFSNMLER---DVVT-WNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTAL 429

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L     L+S E+G+  H   ++    +   +++ L+ MY+K   +  A+ LF+K SD DR
Sbjct: 430 LSLASNLRSQEIGKQAHAY-LIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDR 488

Query: 300 --VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
               WN MI+ Y Q+G  +E   +   M+    R +  T  + + + + M  I  GKQ+H
Sbjct: 489 DEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIH 548

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              +R   +  V V  +L+DMY +   +  A  +F     K  V++++MI  Y  H    
Sbjct: 549 GFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGE 608

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            AL LF  M   G++ D VT + IL AC   G ++
Sbjct: 609 RALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVD 643



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 149/287 (51%), Gaps = 21/287 (7%)

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAIAAVSSISTMK 348
           LFD +     V+WN +I  +  +  P ++L     M  S   + D +T  + + + +  +
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC-------------EDLNCARKIFDSV 395
           +++ GK +H +VLR+       V+NSL++MY  C              + +  R++FD++
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + + VV+W++MI  YV  ++ +EA ++F  M   G+    V+ +N+ PA   +   ++  
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNAN 238

Query: 456 YLHGYSMKLG---LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            L+G  +KLG   ++    V++AIF+ YA+ GC++ A E+FD      ++   WN+MI  
Sbjct: 239 VLYGLVVKLGSDFVDDFFVVSSAIFM-YAELGCVDFAREIFD--CCLERNTEVWNTMIGG 295

Query: 513 YAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGR 558
           Y ++    +   L+ Q+ +S+    D +TFL  LTA      +E GR
Sbjct: 296 YVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGR 342



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 162/316 (51%), Gaps = 5/316 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA YI+       +++ + +I  Y+  G +  S +VF+++   + + + T++    +
Sbjct: 342 RQLHA-YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ L++   M  Q       T   ++   S L     G++ HA +++ G   F+ +
Sbjct: 401 NGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGM 459

Query: 169 GDALVEFYIKCDGGFENEKGMIQRK--FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
              L++ Y K  G     + + ++   +   ++ WN++I+   QNG SE+ F +F+ M  
Sbjct: 460 DSYLIDMYAK-SGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           +    ++ TL ++L +   + ++ LG+ +H  A+     +++ V TALL MYSK  ++  
Sbjct: 519 QNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITY 578

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +F +  +K+ V +  MIS+Y Q G  + +L L   M+ SG + D  T +A +S+ S 
Sbjct: 579 AENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSY 638

Query: 347 MKNIEWGKQMHANVLR 362
              ++ G ++  ++ R
Sbjct: 639 AGLVDEGLRIFQSMER 654



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 16/242 (6%)

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACV 446
           A  +FDS+   T V W+++I G++ ++  ++AL  ++ M+     + D  T  + L AC 
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC-IEMAGELFDEEKID------ 499
              +L+  K LH + ++    S   V  ++   Y+ C   +   G  +D    D      
Sbjct: 116 QARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVF 175

Query: 500 ----SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
                ++++ WN+MIS Y K     + FK++  M +  +RP  ++F+ +  A       +
Sbjct: 176 DTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYD 235

Query: 556 EGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
              +++  +    G +   + +  +S + +    G +D ARE+  D   + +  VW  ++
Sbjct: 236 NANVLYG-LVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIF-DCCLERNTEVWNTMI 293

Query: 614 SA 615
             
Sbjct: 294 GG 295



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 12  QSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHL----QQIHARYIILHGLHQNLIL 67
           + G   F +      RP+  A    S+L  C NP       +QIH  + I   L++N+ +
Sbjct: 507 EEGFAVFRKMIEQNVRPN--AVTLASILPAC-NPMGTIGLGKQIHG-FAIRCFLNRNVFV 562

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            + L+D Y+  G ++ ++ VF      NS+ Y T++ +  + G  E+ L ++  M    +
Sbjct: 563 GTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGI 622

Query: 128 YPAEDTYPFVIRSCS 142
            P   T+  ++ +CS
Sbjct: 623 KPDSVTFVAILSACS 637


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 208/639 (32%), Positives = 349/639 (54%), Gaps = 12/639 (1%)

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           L ++VF+++   N + + T++    K     +   +++ M    + P   ++  V  +  
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVW 229

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
            + D+ +   ++  VVKLG D  DD  V  + +  Y +  G  +  + +     +     
Sbjct: 230 RMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAEL-GCVDFAREIFDCCLERNTEV 288

Query: 201 WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++I   VQN    ++ +LF ++M  E    D  T ++ L +  +L+ L+LGR +H   
Sbjct: 289 WNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYI 348

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + S     + +  A++ MYS+  S+  +  +F  M ++D V WN M+SA+ Q+G   E L
Sbjct: 349 LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGL 408

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L+  M + GF  D  T  A +S  S +++ E GKQ HA ++R+G  ++  +   LIDMY
Sbjct: 409 MLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLIDMY 467

Query: 380 CECEDLNCARKIF--DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            +   +  A+++F  +S   +   +W++MI GY  +  S E   +F +M  + V  + VT
Sbjct: 468 AKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVT 527

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           + +ILPAC  +G +   K +HG++++  LN    V TA+   Y+K G I  A  +F E  
Sbjct: 528 LASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETL 587

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
              K+ +T+ +MI +Y +HG   +   L+  M  S ++PD +TF+ +L+AC  AGLV+EG
Sbjct: 588 --EKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEG 645

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLLSAC 616
             IF+ M+  Y  +PS EHY  + ++LGR G + EA E VK +  + +  R+WG LL AC
Sbjct: 646 LRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGAC 705

Query: 617 KMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
           ++H E EL ++ A KL+ ME  +   G +VLLSNIYAA G W+ V ++R  +R +GL K 
Sbjct: 706 RIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKE 765

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            GCSW+E+   V+ F + D  HPQ   IY +L  L +E+
Sbjct: 766 AGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEM 804



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 226/471 (47%), Gaps = 26/471 (5%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++I   + N     +   +  MR   + +FDS T  + L++  + +SL+LG+ +HC  
Sbjct: 71  WNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHV 130

Query: 260 VVSDFCKDLSVNTALLSMYSK-------LASLED------AKMLFDKMSDKDRVVWNIMI 306
           + S F     V  +LL+MYS        L +  D       + +FD M  ++ V WN MI
Sbjct: 131 LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMI 190

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S Y ++    E+ ++   M+R G R    + +    ++  M + +    ++  V++ GSD
Sbjct: 191 SWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSD 250

Query: 367 Y--QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           Y     V +S I MY E   ++ AR+IFD    +    W++MI GYV ++  +EA+ LF 
Sbjct: 251 YVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFV 310

Query: 425 E-MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           + M+ E   +D VT ++ L A   +  L+  + LH Y +K        +  AI + Y++C
Sbjct: 311 QVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRC 370

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I  + ++F    +  +D++TWN+M+SA+ ++G   +   L  +M++     D +T   
Sbjct: 371 GSIGTSFKVFS--NMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTA 428

Query: 544 LLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELV-KDMP 601
           LL+   N    E G+     + +    +E    +   ++++  ++G +  A++L  K+  
Sbjct: 429 LLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY---LIDMYAKSGLITTAQQLFEKNSX 485

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           +  D   W  +++    +  +E       K+I  E     N V L++I  A
Sbjct: 486 YDRDEATWNAMIAGYTQNGLSEEGFAVFRKMI--EQNVRPNAVTLASILPA 534



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 211/463 (45%), Gaps = 12/463 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +  + S+ I  YA LG +  ++++F+     N+ ++ T++    +     + + ++ Q+ 
Sbjct: 254 DFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVM 313

Query: 124 LQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG- 181
               +  +D T+   + + S L     G ++HA ++K        + +A++  Y +C   
Sbjct: 314 ESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSI 373

Query: 182 --GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
              F+    M++R   D+ + WN+++S  VQNG  ++   L   M+ +G   DS TL  L
Sbjct: 374 GTSFKVFSNMLER---DVVT-WNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTAL 429

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS--DK 297
           L     L+S E+G+  H   ++    +   ++  L+ MY+K   +  A+ LF+K S  D+
Sbjct: 430 LSLASNLRSQEIGKQAHAY-LIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDR 488

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D   WN MI+ Y Q+G  +E   +   M+    R +  T  + + + + M  I  GKQ+H
Sbjct: 489 DEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIH 548

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              +R   +  V V  +L+DMY +   +  A  +F     K  V++++MI  Y  H    
Sbjct: 549 GFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGE 608

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAI 476
            AL LF  M   G++ D VT + IL AC   G + E ++       +  +   S     +
Sbjct: 609 RALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCV 668

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
                + G +  A E       +      W S++ A   HG++
Sbjct: 669 ADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEF 711



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 149/287 (51%), Gaps = 21/287 (7%)

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTAIAAVSSISTMK 348
           LFD +     V+WN +I  +  +  P ++L     M  S   + D +T  + + + +  +
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC-------------EDLNCARKIFDSV 395
           +++ GK +H +VLR+       V+NSL++MY  C              + +  R++FD++
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + + VV+W++MI  YV  ++ +EA ++F  M   G+    V+ +N+ PA   +   ++  
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNAN 238

Query: 456 YLHGYSMKLG---LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
            L+G  +KLG   ++    V++AIF+ YA+ GC++ A E+FD      ++   WN+MI  
Sbjct: 239 VLYGLVVKLGSDYVDDFFVVSSAIFM-YAELGCVDFAREIFD--CCLERNTEVWNTMIGG 295

Query: 513 YAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGR 558
           Y ++    +   L+ Q+ +S+    D +TFL  LTA      ++ GR
Sbjct: 296 YVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGR 342



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 172/339 (50%), Gaps = 11/339 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA YI+       +++ + +I  Y+  G +  S +VF+++   + + + T++    +
Sbjct: 342 RQLHA-YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ L++  +M  Q       T   ++   S L     G++ HA +++ G   F+ +
Sbjct: 401 NGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGM 459

Query: 169 GDALVEFYIKCDGGFENEKGMIQRK--FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
              L++ Y K  G     + + ++   +   ++ WN++I+   QNG SE+ F +F+ M  
Sbjct: 460 DGYLIDMYAK-SGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           +    ++ TL ++L +   + ++ LG+ +H  A+     +++ V TALL MYSK  ++  
Sbjct: 519 QNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITY 578

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +F +  +K+ V +  MI +Y Q G  + +L L   M+ SG + D  T +A +S+ S 
Sbjct: 579 AENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSY 638

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              ++ G ++  ++ R   +Y++   +   + YC   D+
Sbjct: 639 AGLVDEGLRIFQSMER---EYKIQPSS---EHYCCVADM 671



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 107/241 (44%), Gaps = 14/241 (5%)

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACV 446
           A  +FDS+   T V W+++I G++ ++  ++AL  ++ M+     + D  T  + L AC 
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC-IEMAGELFDEEKID------ 499
              +L+  K LH + ++    S   V  ++   Y+ C   +   G  +D    D      
Sbjct: 116 QARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVF 175

Query: 500 ----SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
                ++++ WN+MIS Y K     + FK++  M +  +RP  ++F+ +  A       +
Sbjct: 176 DTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYD 235

Query: 556 EGRIIFK-EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
              +++   +K    Y       +S + +    G +D ARE+  D   + +  VW  ++ 
Sbjct: 236 NANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIF-DCCLERNTEVWNTMIG 294

Query: 615 A 615
            
Sbjct: 295 G 295



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 12  QSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHL----QQIHARYIILHGLHQNLIL 67
           + G   F +      RP+  A    S+L  C NP       +QIH  + I   L+QN+ +
Sbjct: 507 EEGFAVFRKMIEQNVRPN--AVTLASILPAC-NPMGTIGLGKQIHG-FAIRCFLNQNVFV 562

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            + L+D Y+  G ++ ++ VF      NS+ Y T++ +  + G  E+ L ++  M    +
Sbjct: 563 GTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGI 622

Query: 128 YPAEDTYPFVIRSCS 142
            P   T+  ++ +CS
Sbjct: 623 KPDSVTFVAILSACS 637


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/465 (36%), Positives = 278/465 (59%), Gaps = 4/465 (0%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           LL+    L  +E GRIVH   V S F  + L +   +++MY+K   L+DA+ +FD+M  K
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +I+ + Q+  P+++L L   M+R G + + FT  + + +  +   ++ G Q+H
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  L+ G    V V ++L+DMY  C  ++ A+  FD + TK+ VSW+++I G+    +  
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
            AL L  +M+ +  +    T  ++  AC +IGALE  K++H + +K GL  ++ +   + 
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLL 332

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G I+ A  +FD  ++   D+++WN+M++  A+HG   +    + QM +  + P+
Sbjct: 333 DMYAKAGSIDDAKRVFD--RLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPN 390

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            I+FL +LTAC ++GL++EG   F+ MK+ Y  EP   HY + V+LLGR G +D A   +
Sbjct: 391 EISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFI 449

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++MP +P A VWG LL AC+MH   EL    AE+   ++P ++G  +LLSNIYA+AG+W 
Sbjct: 450 REMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWR 509

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            VAK+R  +++ G+KK P CSW+EI   VH F A D++HPQ   I
Sbjct: 510 DVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEI 554



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 191/393 (48%), Gaps = 5/393 (1%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFE 184
           S+ P  + Y  +++ C+ L     G  +HA +V   F D+   + + +V  Y KC G  +
Sbjct: 82  SLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKC-GCLD 140

Query: 185 NEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           + + M  +   KD+ + W +LI+   QN +   +  LF  M   G + +  TL +LL+++
Sbjct: 141 DARRMFDEMPTKDMVT-WTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKAS 199

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
                L+ G  +H   +   +   + V +AL+ MY++   ++ A++ FD M  K  V WN
Sbjct: 200 GSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWN 259

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            +IS + + G  + +L LL  M R  F+   FT  +  S+ +++  +E GK +HA+++++
Sbjct: 260 ALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKS 319

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G      + N+L+DMY +   ++ A+++FD +    VVSW++M+ G   H    E L  F
Sbjct: 320 GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRF 379

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M   G+E + ++ + +L AC + G L+   Y      K  +               + 
Sbjct: 380 EQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRV 439

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           G ++ A     E  I+    + W +++ A   H
Sbjct: 440 GLLDRAERFIREMPIEPTAAV-WGALLGACRMH 471



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 149/315 (47%), Gaps = 12/315 (3%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C     ++Q   +HA  +  H L  +L+L + +++ YA  G L  ++++F+ + + 
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   S+       LL++ QM    + P   T   ++++         G ++H
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           A  +K G+ S   VG ALV+ Y +C           Q  F  + ++    WN+LIS   +
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARC-----GHMDAAQLAFDGMPTKSEVSWNALISGHAR 267

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G+ E +  L   M+ +  +    T  ++  +   + +LE G+ VH   + S       +
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFI 327

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
              LL MY+K  S++DAK +FD++   D V WN M++   Q G  KE+L+    M+R G 
Sbjct: 328 GNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI 387

Query: 331 RADLFTAIAAVSSIS 345
             +  + +  +++ S
Sbjct: 388 EPNEISFLCVLTACS 402



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           +++  + PD   +  LL  C   G VE+GRI+   + +S+  +        +VN+  + G
Sbjct: 78  IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL--ISMEPENAGNYVLL 646
            +D+AR +  +MP K D   W  L++    ++    A L   ++  + ++P    N+  L
Sbjct: 138 CLDDARRMFDEMPTK-DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQP----NHFTL 192

Query: 647 SNIYAAAGKWNGV 659
           S++  A+G  +G+
Sbjct: 193 SSLLKASGSEHGL 205


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/685 (29%), Positives = 371/685 (54%), Gaps = 13/685 (1%)

Query: 34  HSF-SLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           H+F SL+  C +     H    H R +I+ G   +  ++++LI+ Y+  G    +++VF+
Sbjct: 49  HTFPSLVKACTSLDLFSHGLSFHQR-VIVDGYSSDSYIATSLINFYSKFGHNQSARKVFD 107

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           ++   N + + T++   ++ GE++    +Y  M  Q + P+  T   ++   S +L+ + 
Sbjct: 108 TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL---SGVLELVH 164

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLA 208
            + +HA V++ GF S   + ++++  Y KC G  E+ + + +    +D+ S WNSL+S  
Sbjct: 165 LQCLHACVIQYGFGSDVALANSMLNVYCKC-GRVEDAQALFELMDARDVIS-WNSLVSGY 222

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            Q G   +  +L   M+ +G E D  T  +L+ +      L +G++VH   + +   +D 
Sbjct: 223 AQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDS 282

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + T+L+ MY K  ++  A  +F+ M  KD + W  MIS   Q+     ++ +   M++S
Sbjct: 283 HIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKS 342

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
                  T  + +++ + + +   G  +H  +LR      +   NSL+ MY +C  L  +
Sbjct: 343 RVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQS 402

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             +FD +  + +VSW++++ G+  +    +AL LF+EM+      D +T++++L AC +I
Sbjct: 403 CSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASI 462

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           GAL   K++H +  K  L     ++TA+   Y+KCG +  A + FD  ++  +D+++W+S
Sbjct: 463 GALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFD--RMPQQDLVSWSS 520

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +I+ Y  HG      ++Y+    + ++P+ + +L +L+AC + GLV++G   F  M + +
Sbjct: 521 IIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDF 580

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G EP  EH A +V+LL RAG ++EA    K M  KP   V G LL AC+     EL ++ 
Sbjct: 581 GIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIV 640

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A +++ ++P NAGNYV L++ YA+  +W+GV ++ T ++   LKK PG S+IE+   +  
Sbjct: 641 AREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITT 700

Query: 689 FWAADQSHPQADAIYTILGILELEI 713
           F+    SHPQ + I  +L IL  E+
Sbjct: 701 FFTDHSSHPQFEEIMLVLKILGSEM 725



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 278/540 (51%), Gaps = 16/540 (2%)

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           S  +P +  Y  I+  LS  G +   LL Y  M      P   T+P ++++C+ L  F  
Sbjct: 7   SFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSH 66

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLI 205
           G   H +V+  G+ S   +  +L+ FY K    F + +   ++ F  +  R    W ++I
Sbjct: 67  GLSFHQRVIVDGYSSDSYIATSLINFYSK----FGHNQSA-RKVFDTMDDRNVVPWTTMI 121

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
               + G+ + +F ++ +MR +G +  S T++ LL   +EL  L+    +H   +   F 
Sbjct: 122 GCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ---CLHACVIQYGFG 178

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            D+++  ++L++Y K   +EDA+ LF+ M  +D + WN ++S Y Q G  +E L+LL+ M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G   D  T  + VS+ +    +  GK +H ++LR G +    +  SLI MY +C ++
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNV 298

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           N A +IF+ +  K V+SW++MI G V +D +  A+ +F  M    V     TI ++L AC
Sbjct: 299 NSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             +G+      +HGY ++  +        ++   YAKCG +E +  +FD  ++  +DI++
Sbjct: 359 AELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFD--RMSRRDIVS 416

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN+++S +A++G   +   L+ +M+++  RPD IT + LL AC + G + +G+ I   + 
Sbjct: 417 WNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVT 476

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +S    P      ++V++  + G +  A++    MP + D   W  +++    H + E A
Sbjct: 477 KSC-LGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETA 534



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 161/332 (48%), Gaps = 7/332 (2%)

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           +N +I+    +G   + L     M+ +    D  T  + V + +++     G   H  V+
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
            +G      +  SLI+ Y +      ARK+FD++  + VV W++MI  Y    +   A  
Sbjct: 76  VDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFS 135

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           +++ M+ +G++   VT++ +L   +    L H++ LH   ++ G  S  ++  ++   Y 
Sbjct: 136 MYNIMRRQGIQPSSVTMLGLLSGVLE---LVHLQCLHACVIQYGFGSDVALANSMLNVYC 192

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A  LF  E +D++D+I+WNS++S YA+ G+  +  +L  +MK   + PD  TF
Sbjct: 193 KCGRVEDAQALF--ELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             L++A      +  G+++   +  + G E       S++ +  + G+++ A  + + M 
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHILRA-GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM 309

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            K D   W  ++S    +   ++A     +++
Sbjct: 310 HK-DVISWTAMISGLVQNDCADMAVTVFRRML 340


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 215/700 (30%), Positives = 371/700 (53%), Gaps = 20/700 (2%)

Query: 27  RPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           RP  + T S SLL  C   +  +    +HAR +I   +  + +L ++LI  Y+  G  + 
Sbjct: 58  RPMDSVTFS-SLLKSCIRARDFRLGKLVHAR-LIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 84  SQQVFNSIT---SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           ++ VF ++      + + +  ++      G     + V+ +     + P +  Y  VIR+
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA 175

Query: 141 CSCLLDFIS-GEKIHAQVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           CS   DF+  G      ++K G F+S   VG +L++ ++K +  FEN   +  +  +   
Sbjct: 176 CSNS-DFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             W  +I+  +Q G   ++   F  M + G E D  TL ++  +  EL++L LG+ +H  
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSW 294

Query: 259 AVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMISAYYQS-GF 314
           A+ S    D  V  +L+ MY+K +   S++D + +FD+M D   + W  +I+ Y ++   
Sbjct: 295 AIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNL 352

Query: 315 PKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             E++ L   M+  G    + FT  +A  +   + +   GKQ+     + G     SV N
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVAN 412

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           S+I M+ + + +  A++ F+S+  K +VS+++ + G   +    +A +L SE+    + V
Sbjct: 413 SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGV 472

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
              T  ++L    N+G++   + +H   +KLGL+    V  A+   Y+KCG I+ A  +F
Sbjct: 473 SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           +   ++++++I+W SMI+ +AKHG   +  + + QM +  V+P+ +T++ +L+AC + GL
Sbjct: 533 N--FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V EG   F  M E +  +P  EHYA MV+LL RAG + +A E +  MPF+ D  VW   L
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            AC++HS TEL +L A K++ ++P     Y+ LSNIYA AGKW    +MR  +++R L K
Sbjct: 651 GACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVK 710

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             GCSWIE+G  +H+F+  D +HP A  IY  L  L  EI
Sbjct: 711 EGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEI 750


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 223/688 (32%), Positives = 374/688 (54%), Gaps = 32/688 (4%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L+Q+ AR I      ++L + S L+  +A  GL+  ++ +F  +   N++    ++  L+
Sbjct: 269 LEQMLAR-IEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLA 327

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-----------GEKIHAQ 156
           +  + E+   ++K+M        +D       S + LL   +           G+++HA 
Sbjct: 328 RQHQGEEAAKIFKEM--------KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAY 379

Query: 157 VVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
           +++    D +  +G+ALV  Y KC+   +N + + Q         WNS+IS    N + E
Sbjct: 380 LIRNALVDVWILIGNALVNLYAKCNA-IDNARSIFQLMPSKDTVSWNSIISGLDHNERFE 438

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++   F  MR  G      ++I+ L S   L  + LG+ +H   +      D+SV+ ALL
Sbjct: 439 EAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALL 498

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS-GFPKESLELLMCMVRSGFRADL 334
           ++Y++   +E+ + +F  M + D+V WN  I A   S     ++++  + M+++G++ + 
Sbjct: 499 TLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNR 558

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T I  +S++S++  +E G+Q+HA +L++      ++ N+L+  Y +CE +     IF  
Sbjct: 559 VTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSR 618

Query: 395 V-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           + + +  VSW++MI GY+ +    +A+ L   M  +G  +D  T+  +L AC ++  LE 
Sbjct: 619 MSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLER 678

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              +H  +++  L +   V +A+   YAKCG I+ A   F  E +  ++I +WNSMIS Y
Sbjct: 679 GMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFF--ELMPVRNIYSWNSMISGY 736

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +  KL+TQMKQ    PD +TF+G+L+AC + GLV+EG   FK M E Y   P 
Sbjct: 737 ARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPR 796

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSE-TELAELTAEK 631
            EH++ MV+LLGRAG + +  E +K MP  P+A +W  +L A C+ +S  TEL    A+ 
Sbjct: 797 IEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKM 856

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           LI +EP NA NYVLLSN++AA GKW  V + R  +R+  +KK  GCSW+ +   VH F A
Sbjct: 857 LIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVA 916

Query: 692 ADQSHPQADAIYTILGILELEIMEGRRE 719
            DQ+HP+ + IY  L     EIM   R+
Sbjct: 917 GDQTHPEKEKIYDKLK----EIMNKMRD 940



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 138/583 (23%), Positives = 286/583 (49%), Gaps = 23/583 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            Q+H + I   GL  ++   + L++ +   G L  +Q++F+ +   N + +  ++   ++
Sbjct: 59  HQLHLQ-IYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS--GEKIHAQVVKLGFDSFD 166
            G  ++  ++++ +    + P        +R+C  L   +   G +IH  + K  + S  
Sbjct: 118 NGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDM 177

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            + + L+  Y  C    ++ + + +       + WNS+IS+  + G +  +F+LF  M+ 
Sbjct: 178 VLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQR 237

Query: 227 EGAEFDSG----TLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSK 280
           E  E +      T  +L+     L    L  +   +A +  S F KDL V +AL+S +++
Sbjct: 238 EATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFAR 297

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-----VRSGFRADLF 335
              ++ AKM+F++M D++ V  N ++    +    +E+ ++   M     + +   A L 
Sbjct: 298 YGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLL 357

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           +A    S++   K    G+++HA ++RN   D  + + N+L+++Y +C  ++ AR IF  
Sbjct: 358 SAFTEFSNLKEGKRK--GQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQL 415

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           + +K  VSW+S+I G   +++  EA+  F  M+  G+     ++I+ L +C ++G +   
Sbjct: 416 MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLG 475

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           + +HG  +K GL+   SV+ A+   YA+  C+E   ++F    +   D ++WNS I A A
Sbjct: 476 QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVF--FLMPEYDQVSWNSFIGALA 533

Query: 515 -KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEP 572
                  Q  K + +M Q+  +P+ +TF+ +L+A  +  L+E GR I    +K S   + 
Sbjct: 534 TSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDN 593

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           + E+  +++   G+   M++   +   M  + D   W  ++S 
Sbjct: 594 AIEN--TLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISG 634



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 171/372 (45%), Gaps = 25/372 (6%)

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E   Q+H  + + G    V   N+L++++    +L  A+K+FD +  K +VSWS ++ G
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA--LEHVKYLHGYSMKLGLN 467
           Y  +    EA  LF  +   G+  +   I + L AC  +G   L+    +HG   K    
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 468 SLSSVNTAIFISYAKC-GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           S   ++  +   Y+ C   I+ A  +F+E K+  K   +WNS+IS Y + GD    FKL+
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKM--KTSASWNSIISVYCRRGDAISAFKLF 232

Query: 527 TQMKQS----DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK---ESYGYEPSQEHYAS 579
           + M++     + RP+  TF  L+T  V   LV+ G  + ++M    E   +       ++
Sbjct: 233 SSMQREATELNCRPNEYTFCSLVT--VACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSA 290

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           +V+   R G +D A+ + + M  +    + G ++   + H   E A++  E +  +   N
Sbjct: 291 LVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKE-MKDLVEIN 349

Query: 640 AGNYVLLSNIYA-----AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           A +Y +L + +        GK  G  ++  +L    L       WI IG  +   +A   
Sbjct: 350 ASSYAVLLSAFTEFSNLKEGKRKG-QEVHAYLIRNALVDV----WILIGNALVNLYAKCN 404

Query: 695 SHPQADAIYTIL 706
           +   A +I+ ++
Sbjct: 405 AIDNARSIFQLM 416


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/659 (30%), Positives = 357/659 (54%), Gaps = 9/659 (1%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L +N +L+++LI  Y        ++ VF+ + + N + + +++   ++       L ++ 
Sbjct: 72  LVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFS 131

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
            M      P +      +R+C+ L D   G ++HAQ +K    S   V +ALV  Y K  
Sbjct: 132 SMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSK-S 190

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA----EFDSGTL 236
           G   +   +  R  +     W S+I+   Q G   ++ ++F+ M  EG     EF  G++
Sbjct: 191 GLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSV 250

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
            +   +   L SLE G  +H ++V      +     +L  MY++   LE AK +F  +  
Sbjct: 251 FS---ACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDA 307

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
            D V WN +I+A    G   E++ LL  M  SG R D  T    + +      I+ G+ M
Sbjct: 308 PDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLM 367

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H+ +++ G D  VSV NSL+ MY  C D + A  +F   + + VV+W+S++   V H   
Sbjct: 368 HSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHL 427

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
               +LF+ ++     +D +++ N+L A   +G  E VK +H  + K+GL + + ++  +
Sbjct: 428 EVVFKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGL 487

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
             +YAKCG ++ A +LF+    +S D+ +W+S+I  YA+ G   +   L+ +M+   VRP
Sbjct: 488 IDTYAKCGSLDDAVKLFEMMGTNS-DVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRP 546

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           + +TF+G+LTAC   GLV+EG   +  M+  +G  P++EH + +++LL RAG + EA + 
Sbjct: 547 NHVTFVGVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKF 606

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           V  MPF+PD  +W  LL+  K H++ E+    AE +++++P ++  YVLL NIY+A+G W
Sbjct: 607 VDQMPFEPDIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDW 666

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           N  A+++  +R  G+KK+PG SW+++   +  F   D+SHP+++ IYT+L ++ +E+++
Sbjct: 667 NEFARLKKAMRSSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYTMLELVGMEMIK 725



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 181/382 (47%), Gaps = 5/382 (1%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           FS   +  + ++ +QIH+   + + L  N     +L D YA    L  +++VF  I +P+
Sbjct: 251 FSACGVLGSLEYGEQIHS-LSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPD 309

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
            + + +I+   S  G   + +++  +M    + P   T   ++ +C        G  +H+
Sbjct: 310 LVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHS 369

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
            +VKLG D    V ++L+  Y +C           + + +D+ + WNS+++  VQ+   E
Sbjct: 370 YLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVT-WNSILTACVQHQHLE 428

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
             F+LF L++      D  +L N+L ++ EL   E+ + VH          D  ++  L+
Sbjct: 429 VVFKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLI 488

Query: 276 SMYSKLASLEDAKMLFDKM-SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
             Y+K  SL+DA  LF+ M ++ D   W+ +I  Y QSG+P+++L+L   M   G R + 
Sbjct: 489 DTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNH 548

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS-LIDMYCECEDLNCARKIFD 393
            T +  +++ S +  ++ G   ++ +           H S +ID+      L  A K  D
Sbjct: 549 VTFVGVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVD 608

Query: 394 SVKTKT-VVSWSSMIKGYVTHD 414
            +  +  +V W +++ G  TH+
Sbjct: 609 QMPFEPDIVMWKTLLAGSKTHN 630


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 207/701 (29%), Positives = 373/701 (53%), Gaps = 21/701 (2%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           ++ H    L  C++ + ++QIH R  I      N+ L + ++ +Y   G ++ ++  F++
Sbjct: 26  SSGHYRDALRQCQDLESVRQIHDR--ISGAASANVFLGNEIVRAYGKCGSVASARVAFDA 83

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           I   N   +G++L   ++ G Y   L +YK+M LQ   P    Y  V+ +C+ +     G
Sbjct: 84  IARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIEALEEG 140

Query: 151 EKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLA 208
           + IH+++        D +  ++L+  Y KC G  E+ K + +R   +   S WN++I+  
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKC-GSLEDAKRLFERMSGRRSVSSWNAMIAAY 199

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            Q+G  E++  L++ M +E +     T  ++L +   L  L+ GR +H +        DL
Sbjct: 200 AQSGHFEEAIRLYEDMDVEPS---VRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDL 256

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           S+  ALL+MY++   L+DA  +F ++  +D V W+ MI+A+ ++    E++E    M   
Sbjct: 257 SLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLE 316

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN--SLIDMYCECEDLN 386
           G R + +T  + + + +++ ++  G+ +H  +L NG  Y++++ N  +L+D+Y     L+
Sbjct: 317 GVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNG--YKITLVNGTALVDLYTSYGSLD 374

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN--ILPA 444
            AR +FD ++ +    W+ +I GY         L L+ EMK    +V    II   ++ A
Sbjct: 375 EARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK-NTTKVPATKIIYSCVISA 433

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C ++GA    +  H      G+ S   + T++   Y++ G +E A ++FD  K+ S+D +
Sbjct: 434 CASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFD--KMSSRDTL 491

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            W ++I+ YAKHG+      LY +M+     P  +TF+ +L AC +AGL E+G+ +F  +
Sbjct: 492 AWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISI 551

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           +  Y   P+  HY+ +++LL RAG + +A EL+  MP +P+   W  LL A ++H + + 
Sbjct: 552 QSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKR 611

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           A   A ++  ++P +  +YVLLSN++A  G   G+A +R  +  RG+KK  G SWIE+  
Sbjct: 612 ATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVAD 671

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEIME-GRRESSEEL 724
            +HEF   D SHP+   I+  L  L  +I E G    SEE+
Sbjct: 672 QIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEV 712


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 277/473 (58%), Gaps = 3/473 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL S +  K+LE G+ +H          +L + T L++ YS   SL +A  LFDK+   
Sbjct: 63  SLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKG 122

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +WN++I AY  +G  + ++ L   M+  G + D FT    + + S +  I  G+ +H
Sbjct: 123 NLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIH 182

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             V+R+G +  V V  +L+DMY +C  +  AR +FD +  +  V W+SM+  Y  +    
Sbjct: 183 ERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPD 242

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           E+L L  EM  +GV     T++ ++ +  +I  L H + +HG+  + G      V TA+ 
Sbjct: 243 ESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALI 302

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAKCG +++A  LF  E++  K +++WN++I+ YA HG   +   L+ +M + + +PD
Sbjct: 303 DMYAKCGSVKVACVLF--ERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMK-EAQPD 359

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITF+G L AC    L++EGR ++  M       P+ EHY  MV+LLG  G +DEA +L+
Sbjct: 360 HITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLI 419

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           + M   PD+ VWG LL++CK H   ELAE+  EKLI +EP+++GNYV+L+N+YA +GKW 
Sbjct: 420 RQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWE 479

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           GVA++R  + D+G+KK   CSWIE+   V+ F + D SHP + AIY  L  LE
Sbjct: 480 GVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLE 532



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 195/386 (50%), Gaps = 4/386 (1%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  ++ SC        G+++HA++ +LG     D+   LV FY  C+    N   +  + 
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNS-LRNAHHLFDKI 119

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            K     WN LI     NG  E +  L+  M   G + D+ TL  +L++   L ++  GR
Sbjct: 120 PKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGR 179

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           ++H   + S + +D+ V  AL+ MY+K   + DA+ +FDK+ D+D V+WN M++AY Q+G
Sbjct: 180 VIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNG 239

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
            P ESL L   M   G R    T +  +SS + +  +  G+++H    R+G  Y   V  
Sbjct: 240 HPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKT 299

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +LIDMY +C  +  A  +F+ ++ K VVSW+++I GY  H  ++EAL LF  M  E  + 
Sbjct: 300 ALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QP 358

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           D +T +  L AC     L+  + L+   ++   +N      T +      CG ++ A +L
Sbjct: 359 DHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDL 418

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGD 518
             +  +   D   W +++++   HG+
Sbjct: 419 IRQMDV-MPDSGVWGALLNSCKTHGN 443



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 202/401 (50%), Gaps = 18/401 (4%)

Query: 21  FPANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYAN 77
           FP++ +  +  A    SLL  C + + L+   Q+HAR   L G+  NL L++ L++ Y+ 
Sbjct: 51  FPSSPSNHYYYA----SLLESCISAKALEPGKQLHARLCQL-GIAYNLDLATKLVNFYSV 105

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
              L  +  +F+ I   N  L+  +++  +  G +E  + +Y QM    + P   T PFV
Sbjct: 106 CNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFV 165

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           +++CS L     G  IH +V++ G++    VG ALV+ Y KC G   + + +  +     
Sbjct: 166 LKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKC-GCVVDARHVFDKIVDRD 224

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              WNS+++   QNG  ++S  L   M  +G      TL+ ++ S+ ++  L  GR +H 
Sbjct: 225 AVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHG 284

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
                 F  +  V TAL+ MY+K  S++ A +LF+++ +K  V WN +I+ Y   G   E
Sbjct: 285 FGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVE 344

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLI 376
           +L+L   M++   + D  T + A+++ S  + ++ G+ ++  ++R+   +  V  +  ++
Sbjct: 345 ALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMV 403

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVS----WSSMIKGYVTH 413
           D+   C  L+   + +D ++   V+     W +++    TH
Sbjct: 404 DLLGHCGQLD---EAYDLIRQMDVMPDSGVWGALLNSCKTH 441


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 220/680 (32%), Positives = 364/680 (53%), Gaps = 28/680 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN-LS 107
           + +H R +    L  + +++++L+  Y+  G +  +++VF+ +     L+  T + + L+
Sbjct: 60  RALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLA 119

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF-ISGEKIHAQVVKLGFDSFD 166
           + G   ++L +  +M    + P   T     R+C     F ++G  +   V+K GF   D
Sbjct: 120 RNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTD 179

Query: 167 -DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             VG AL++ + +       +    QR F  L  R    W  LI+  VQ G + K  ELF
Sbjct: 180 VSVGCALIDMFAR-----NGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELF 234

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             M  +G E D  ++ +++ +  EL S+ LG+ +H VA+      D  V+  L+ MY+KL
Sbjct: 235 LHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKL 294

Query: 282 A---SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES-LELLMCMVRSGFRADLFTA 337
               S+E A+ +F  M   + + W  +IS Y QSG  + + + L   M+    R +  T 
Sbjct: 295 KMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITY 354

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
              + + + + + + G+Q+HA+VL+    +   V N+L+ MY E   +  ARK FD +  
Sbjct: 355 SNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYE 414

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE--VDFVTIINILPACVNIGALEHVK 455
             ++S S         D   E        K+EG++  V   T  ++L A  ++G L   +
Sbjct: 415 TNILSMSP--------DVETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQ 466

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            LH  SMK G  S   ++ ++   YA+CG +E A   FDE K    ++I+W S+IS  AK
Sbjct: 467 KLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMK--DHNVISWTSIISGLAK 524

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   Q   ++  M  + V+P+ +T++ +L+AC + GLV+EG+  F+ M++ +G  P  E
Sbjct: 525 HGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRME 584

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HYA +V+LL R+G ++EAR+ + +MP K DA VW  LLSAC+ +  TE+ E+ A  +I++
Sbjct: 585 HYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINL 644

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP +   YVLLSN+YA AG W+ VA++R+ +RD+ L K  G SW+++G  +HEF A D S
Sbjct: 645 EPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTS 704

Query: 696 HPQADAIYTILGILELEIME 715
           HP A  IY  L  L  EI +
Sbjct: 705 HPLAIDIYAKLVTLIREIKD 724


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/568 (35%), Positives = 313/568 (55%), Gaps = 6/568 (1%)

Query: 150  GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
            G++IH  VV+ G D    VG+ L+  Y+K            Q    DL S WN++IS   
Sbjct: 925  GKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVS-WNTMISGCA 983

Query: 210  QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS-LELGRIVHCVAVVSDFCKDL 268
             +G  E S  +F  +   G   D  T+ ++LR+   L     L   +H  A+ +    D 
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDS 1043

Query: 269  SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-FPKESLELLMCMVR 327
             V+T L+ +YSK   +E+A+ LF      D   WN M+  Y  SG FPK +L L + M  
Sbjct: 1044 FVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPK-ALRLYILMQE 1102

Query: 328  SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            SG RA+  T   A  +   +  ++ GKQ+ A V++ G +  + V + ++DMY +C ++  
Sbjct: 1103 SGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMES 1162

Query: 388  ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
            AR+IF+ + +   V+W++MI G V + Q   AL  +  M+L  V+ D  T   ++ AC  
Sbjct: 1163 ARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSL 1222

Query: 448  IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            + ALE  + +H  ++KL       V T++   YAKCG IE A  LF  ++ ++  I +WN
Sbjct: 1223 LTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF--KRTNTSRIASWN 1280

Query: 508  SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            +MI   A+HG+  +  + + +MK   V PD +TF+G+L+AC ++GLV E    F  M++ 
Sbjct: 1281 AMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKI 1340

Query: 568  YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
            YG EP  EHY+ +V+ L RAG + EA +++  MPF+  A ++  LL+AC++  + E  + 
Sbjct: 1341 YGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1400

Query: 628  TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
             AEKL+++EP ++  YVLLSN+YAAA +W  VA  R  +R   +KK PG SW+++   VH
Sbjct: 1401 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVH 1460

Query: 688  EFWAADQSHPQADAIYTILGILELEIME 715
             F A D+SH + D IY  +  +   I E
Sbjct: 1461 LFVAGDRSHEETDVIYNKVEYIMKRIRE 1488



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 154/600 (25%), Positives = 271/600 (45%), Gaps = 46/600 (7%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI--TSPNSLLYGTILKNL 106
            ++ HAR I+  G H +  L++NLI  Y+  G LS ++++F++   TS + + +  IL   
Sbjct: 646  KRAHAR-ILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILS-- 702

Query: 107  SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDS 164
            +   +      +++ +    +     T   V + C       + E +H   VK+G  +D 
Sbjct: 703  AHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDV 762

Query: 165  FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            F  V  ALV  Y K     E          +D+   WN ++   V  G   ++  LF   
Sbjct: 763  F--VAGALVNIYAKFGRIREARVLFDGMGLRDV-VLWNVMMKAYVDTGLEYEALLLFSEF 819

Query: 225  RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSVNTALLSMYSKLAS 283
               G   D  TL  L             R+V     V ++  K L      L MY     
Sbjct: 820  NRTGLRPDDVTLCTL------------ARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDD 867

Query: 284  LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
              D             + WN  +S + Q G   E+++  + M+ S    D  T +  +S 
Sbjct: 868  GSDV------------IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSV 915

Query: 344  ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            ++ +  +E GKQ+H  V+R+G D  VSV N LI+MY +   ++ AR +F  +    +VSW
Sbjct: 916  VAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSW 975

Query: 404  SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYLHGYSM 462
            ++MI G         ++ +F ++   G+  D  T+ ++L AC ++G   H+   +H  +M
Sbjct: 976  NTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAM 1035

Query: 463  KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            K G+   S V+T +   Y+K G +E A  LF  +  D  D+ +WN+M+  Y   GD+ + 
Sbjct: 1036 KAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQ--DGFDLASWNAMMHGYIVSGDFPKA 1093

Query: 523  FKLYTQMKQSDVRPDLITFLGLLTACVNAGLV--EEGRIIFKEMKESYGYEPSQEHYASM 580
             +LY  M++S  R + IT      A    GLV  ++G+ I + +    G+       + +
Sbjct: 1094 LRLYILMQESGERANQITLANAAKAA--GGLVGLKQGKQI-QAVVVKRGFNLDLFVISGV 1150

Query: 581  VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE--KLISMEPE 638
            +++  + G M+ AR +  ++P  PD   W  ++S C  + + E A  T    +L  ++P+
Sbjct: 1151 LDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPD 1209



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 187/420 (44%), Gaps = 34/420 (8%)

Query: 137  VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR---K 193
            ++R      D   G++ HA+++  G      + + L+  Y KC G   + + +       
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKC-GSLSSARKLFDTTPDT 690

Query: 194  FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
             +DL + WN+++S      K+   F LF+L+R         TL  + +  +   S     
Sbjct: 691  SRDLVT-WNAILS--AHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAE 747

Query: 254  IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
             +H  AV      D+ V  AL+++Y+K   + +A++LFD M  +D V+WN+M+ AY  +G
Sbjct: 748  SLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807

Query: 314  FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWGKQMHANVLRNGSDYQVSVH 372
               E+L L     R+G R D  T       + + +N+ EW  +            Q+  +
Sbjct: 808  LEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLK------------QLKAY 855

Query: 373  NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
             + + MY +                  V++W+  +  ++   ++ EA+  F +M    V 
Sbjct: 856  GTKLFMYDD------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVA 903

Query: 433  VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
             D +T + +L     +  LE  K +HG  ++ GL+ + SV   +   Y K G +  A  +
Sbjct: 904  CDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTV 963

Query: 493  FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
            F   +++  D+++WN+MIS  A  G       ++  + +  + PD  T   +L AC + G
Sbjct: 964  F--WQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            +QI A  ++  G + +L + S ++D Y   G +  ++++FN I SP+ + + T++    +
Sbjct: 1129 KQIQA-VVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVE 1187

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL--GFDSFD 166
             G+ E  L  Y  M L  + P E T+  ++++CS L     G +IHA  VKL   FD F 
Sbjct: 1188 NGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPF- 1246

Query: 167  DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
             V  +LV+ Y KC G  E+ +G+ +R      + WN++I    Q+G +E++ + F+ M+ 
Sbjct: 1247 -VMTSLVDMYAKC-GNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 227  EGAEFDSGTLINLL 240
             G   D  T I +L
Sbjct: 1305 RGVTPDRVTFIGVL 1318



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 159/384 (41%), Gaps = 31/384 (8%)

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
            ++LR  +    L LG+  H   + S    D  +   L++MYSK  SL  A+ LFD   D
Sbjct: 630 FSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD 689

Query: 297 --KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
             +D V WN ++SA+      ++   L   + RS   A   T            +    +
Sbjct: 690 TSRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAE 747

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
            +H   ++ G  + V V  +L+++Y +   +  AR +FD +  + VV W+ M+K YV   
Sbjct: 748 SLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              EAL LFSE    G+  D VT+      C     L  V       ++  L  L +  T
Sbjct: 808 LEYEALLLFSEFNRTGLRPDDVTL------CT----LARVVKSKQNVLEWQLKQLKAYGT 857

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
            +F+                    D  D+I WN  +S + + G+  +    +  M  S V
Sbjct: 858 KLFMYDD---------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRV 902

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
             D +TF+ +L+       +E G+ I   +  S G +        ++N+  + G +  AR
Sbjct: 903 ACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRS-GLDQVVSVGNCLINMYVKTGSVSRAR 961

Query: 595 ELVKDMPFKPDARVWGPLLSACKM 618
            +   M  + D   W  ++S C +
Sbjct: 962 TVFWQMN-EVDLVSWNTMISGCAL 984



 Score = 39.3 bits (90), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            +QIHA  + L+      +++S L+D YA  G +  ++ +F    +     +  ++  L++
Sbjct: 1230 RQIHANTVKLNCAFDPFVMTS-LVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQ 1288

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
             G  E+ L  +++M  + + P   T+  V+ +CS
Sbjct: 1289 HGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACS 1322


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 215/700 (30%), Positives = 371/700 (53%), Gaps = 20/700 (2%)

Query: 27  RPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           RP  + T S SLL  C   +  +    +HAR +I   +  + +L ++LI  Y+  G  + 
Sbjct: 58  RPMDSVTFS-SLLKSCIRARDFRLGKLVHAR-LIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 84  SQQVFNSIT---SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           ++ VF ++      + + +  ++      G     + V+ +     + P +  Y  VIR+
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA 175

Query: 141 CSCLLDFIS-GEKIHAQVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           CS   DF+  G      ++K G F+S   VG +L++ ++K +  FEN   +  +  +   
Sbjct: 176 CSNS-DFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             W  +I+  +Q G   ++   F  M + G E D  TL ++  +  EL++L LG+ +H  
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSW 294

Query: 259 AVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMISAYYQS-GF 314
           A+ S    D  V  +L+ MY+K +   S++D + +FD+M D   + W  +I+ Y ++   
Sbjct: 295 AIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNL 352

Query: 315 PKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             E++ L   M+  G    + FT  +A  +   + +   GKQ+     + G     SV N
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVAN 412

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           S+I M+ + + +  A++ F+S+  K +VS+++ + G   +    +A +L SE+    + V
Sbjct: 413 SVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGV 472

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
              T  ++L    N+G++   + +H   +KLGL+    V  A+   Y+KCG I+ A  +F
Sbjct: 473 SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           +   ++++++I+W SMI+ +AKHG   +  + + QM +  V+P+ +T++ +L+AC + GL
Sbjct: 533 N--FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V EG   F  M E +  +P  EHYA MV+LL RAG + +A E +  MPF+ D  VW   L
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            AC++HS TEL +L A K++ ++P     Y+ LSNIYA AGKW    +MR  +++R L K
Sbjct: 651 GACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVK 710

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             GCSWIE+G  +H+F+  D +HP A  IY  L  L  EI
Sbjct: 711 EGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEI 750


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/499 (36%), Positives = 294/499 (58%), Gaps = 8/499 (1%)

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++      M   G   D+ T   L++      +++ G+ VH       +   + V   LL
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLL 97

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           +MY K   LE+A+ LFD+M +++ V W  MISAY  +    ++L+ L+ M R G R ++F
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMF 156

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  + + +   + N+   +Q+H  +++ G +  V V ++LID+Y +  DL+ A  +FD +
Sbjct: 157 TYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEM 213

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
            T+ +V W+S+I G+  +    EAL LF  MK  G   D  T+ ++L AC  +  LE  +
Sbjct: 214 PTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGR 273

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H + +K   + +  +N A+   Y KCG +E A   F   ++  KD+I+W++M++  A+
Sbjct: 274 QVHVHVLKFDQDLI--LNNALIDMYCKCGSLEDANSAF--SRMVEKDVISWSTMVAGLAQ 329

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +G   Q  +L+  MK+S  RP+ IT LG+L AC +AGLVE+G   F+ MK+ +G +P +E
Sbjct: 330 NGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGRE 389

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY  +++LLGRAG +DEA +L+ +M  +PD+  W  LL AC++H   +LA   A+K+I +
Sbjct: 390 HYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIEL 449

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EPE+AG Y+LLSNIYA   +W  VA++R  + +RG++KTPGCSWIE+ K +H F   D S
Sbjct: 450 EPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTS 509

Query: 696 HPQADAIYTILGILELEIM 714
           HP+ + I   L  L   +M
Sbjct: 510 HPKIEEIVQRLNDLIERVM 528



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 204/396 (51%), Gaps = 9/396 (2%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M    ++    TY  +I+ CS       G+++H  +   G++    V + L+  Y+K + 
Sbjct: 46  MERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNL 105

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             E E    +   +++ S W ++IS A  N  ++K+ +   LM  EG   +  T  ++LR
Sbjct: 106 LEEAEDLFDEMPERNVVS-WTTMIS-AYSNKLNDKALKCLILMFREGVRPNMFTYSSVLR 163

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +   L +L   R +HC  + +    D+ V +AL+ +YSK + L++A  +FD+M  +D VV
Sbjct: 164 ACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVV 220

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN +I  + Q+    E+L L   M R+GF AD  T  + + + + +  +E G+Q+H +VL
Sbjct: 221 WNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVL 280

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           +   D  + ++N+LIDMYC+C  L  A   F  +  K V+SWS+M+ G   +  S +AL 
Sbjct: 281 K--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALE 338

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISY 480
           LF  MK  G   +++T++ +L AC + G +E   Y      KL G++        +    
Sbjct: 339 LFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLL 398

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            + G ++ A +L  E + +  D +TW +++ A   H
Sbjct: 399 GRAGRLDEAVKLIHEMECEP-DSVTWRTLLGACRVH 433



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 180/374 (48%), Gaps = 18/374 (4%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q  +++H  +I   G    + + + L++ Y    LL  ++ +F+ +   N + + T++  
Sbjct: 72  QEGKRVH-EHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISA 130

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S     +K L     M  + + P   TY  V+R+C  L +     ++H  ++K G +S 
Sbjct: 131 YSN-KLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESD 186

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
             V  AL++ Y K     +N  G+    F ++ +R    WNS+I    QN    ++  LF
Sbjct: 187 VFVRSALIDVYSKW-SDLDNALGV----FDEMPTRDLVVWNSIIGGFAQNSDGNEALNLF 241

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           K M+  G   D  TL ++LR+   L  LELGR VH    V  F +DL +N AL+ MY K 
Sbjct: 242 KRMKRAGFLADQATLTSVLRACTGLALLELGRQVH--VHVLKFDQDLILNNALIDMYCKC 299

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            SLEDA   F +M +KD + W+ M++   Q+G+ +++LEL   M  SG R +  T +  +
Sbjct: 300 GSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVL 359

Query: 342 SSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT- 399
            + S    +E G     ++ +  G D     +  LID+      L+ A K+   ++ +  
Sbjct: 360 FACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPD 419

Query: 400 VVSWSSMIKGYVTH 413
            V+W +++     H
Sbjct: 420 SVTWRTLLGACRVH 433



 Score = 39.7 bits (91), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           +    D  +  +    M++  V  D IT+  L+  C   G V+EG+ + + +    GYEP
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIF-CKGYEP 88

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
                 +++N+  +   ++EA +L  +MP + +   W  ++SA
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPER-NVVSWTTMISA 130


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 215/680 (31%), Positives = 347/680 (51%), Gaps = 97/680 (14%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK---------- 178
           P++    F+ RS     D  +G+ IHA+++K G      + + L+ FY K          
Sbjct: 12  PSDPYTSFLQRSLK-FKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRV 70

Query: 179 -------------------CDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSF 218
                                GG   E   +  +  +  S  W ++I    Q G+ E + 
Sbjct: 71  FDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAI 130

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
            +F+ M  +       TL N+L S   ++ L +GR VH   V       +SV  +LL+MY
Sbjct: 131 GMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMY 190

Query: 279 SKLASLEDAKMLFDKMS-------------------------------DKDRVVWNIMIS 307
           +K      AK++FD+M                                ++D V WN MIS
Sbjct: 191 AKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMIS 250

Query: 308 AYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
            Y Q GF +E+L++   M+  S  + D FT  +A+S+ + ++N++ GKQ+HA+++R   D
Sbjct: 251 GYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFD 310

Query: 367 YQVSVHNSLIDMYCECE---------------------------------DLNCARKIFD 393
              +V N+LI MY +                                   D+N AR+IFD
Sbjct: 311 TFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFD 370

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           S++ + VV+W++MI GYV +  + +A+ LF  M  EG + +  T+  +L    ++ +L+H
Sbjct: 371 SLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDH 430

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +H  + + G  S  SV+ A+   YAK G I  A  +F+      +D ITW SMI A 
Sbjct: 431 GRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHW-KRDTITWTSMIIAL 489

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +   L+ +M ++ ++PD IT++G+L+AC + GLVE+GR  +  M+ ++   P+
Sbjct: 490 AQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPT 549

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
             HYA M++L GRAG + EA   +++MP +PD   WG LL++CK+H   ELAE+ AE+L+
Sbjct: 550 PSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLL 609

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EPEN+G Y  L+N+Y+A G+W   A +R  ++D+G+KK  G SW++I   VH F   D
Sbjct: 610 LIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDD 669

Query: 694 QSHPQADAIYTILGILELEI 713
             HPQ DAIY ++  +  EI
Sbjct: 670 GLHPQRDAIYEMMAKIWKEI 689



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 142/571 (24%), Positives = 263/571 (46%), Gaps = 99/571 (17%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL---------------------- 80
           ++P   + IHAR II  GLH  + L +NL++ YA  G                       
Sbjct: 27  KDPFTGKSIHAR-IIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNII 85

Query: 81  ---------LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
                    L  + +VF  +  P+S+ +  ++   ++ G++E  + ++++M    + P +
Sbjct: 86  LSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQ 145

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG------FEN 185
            T   V+ SC+ +     G K+H+ VVK G  S+  V ++L+  Y K          F+ 
Sbjct: 146 FTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDR 205

Query: 186 EK-----------------GMI---QRKFKDLKSR----WNSLISLAVQNGKSEKSFELF 221
            K                 G++   Q +F+ +  R    WN++IS   Q+G   ++ ++F
Sbjct: 206 MKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIF 265

Query: 222 KLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS- 279
             M M+  ++ D  TL + L +   L++L+LG+ +H   + ++F    +V  AL+SMYS 
Sbjct: 266 SKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSK 325

Query: 280 --------------------------------KLASLEDAKMLFDKMSDKDRVVWNIMIS 307
                                           KL  +  A+ +FD +  +D V W  MI 
Sbjct: 326 SGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIV 385

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            Y Q+GF ++++EL   M++ G + + +T    +S  S++ +++ G+Q+HA+  R+G+  
Sbjct: 386 GYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNAS 445

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEM 426
            VSV N+LI MY +   +N AR +F+ +  K   ++W+SMI     H    EAL LF  M
Sbjct: 446 SVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERM 505

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS-YAKCGC 485
              G++ D +T + +L AC ++G +E  +  +           +  + A  I  + + G 
Sbjct: 506 LENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGL 565

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           ++ A    +   I+  D+I W S++++   H
Sbjct: 566 LQEAHAFIENMPIE-PDVIAWGSLLASCKVH 595


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 297/548 (54%), Gaps = 35/548 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG--TLINLLRSTVELKSLELGRIVHCV 258
           +N++I+     G   ++  L+  +   G+       T+  ++ +   L    LGR  HC 
Sbjct: 106 YNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQ 165

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM------------------------ 294
            +   F  +  V + L+ MY+K+  + DAK +FD+M                        
Sbjct: 166 ILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEA 225

Query: 295 -------SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
                  +D+D + W  M++ + Q+G   ++L     M   G   D +T  + +++   +
Sbjct: 226 RRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGAL 285

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +E GKQ+HA ++R   D  V V ++L+DMY +C  +  A   F  +  K ++SW+++I
Sbjct: 286 SALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALI 345

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY  +  S EA+R+FSEM+ +G++ D  T+ +++ +C N+ +LE     H  ++  GL 
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM 405

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
              +V+ A+   Y KCG IE A  LFDE      D ++W ++++ YA+ G   +   L+ 
Sbjct: 406 HYITVSNALVTLYGKCGSIEDAHRLFDEMLF--HDQVSWTALVTGYAQFGRAKETIDLFE 463

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M   DV+PD +TF+G+L+AC  AG VE+G   F  M++ +G  P  +HY  M++L  R+
Sbjct: 464 KMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G + EA E +K MP  PDA  WG LLSAC++  + E+ +  AE L+ ++P+N  +YVLL 
Sbjct: 524 GRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLC 583

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           +++A  G WN VA++R  +RDR +KK PGCSWI+    VH F A DQSHP +  IY  L 
Sbjct: 584 SMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLE 643

Query: 708 ILELEIME 715
            L  +++E
Sbjct: 644 WLNSKMLE 651



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/529 (26%), Positives = 249/529 (47%), Gaps = 39/529 (7%)

Query: 25  QTRPHMTATHSFSLLN--LCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLS 82
           +T PH   TH   LLN  L    +  +   AR +     H NL   + L+ + A+  LL 
Sbjct: 33  RTLPHPPPTH---LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLD 89

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM--ALQSMYPAEDTYPFVIRS 140
               +F S+   +++ Y  ++   S  G + + + +Y  +  A  S+ P+  T   ++ +
Sbjct: 90  DMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMA 149

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK------CDGGFENEKG------ 188
            S L D   G + H Q+++LGF     VG  LV  Y K          F+   G      
Sbjct: 150 ASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMY 209

Query: 189 --MI------------QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
             MI            +R F+ +  R    W ++++   QNG   ++   F+ MR +G  
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIA 269

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            D  T  ++L +   L +LE G+ +H   + + +  ++ V +AL+ MYSK  S++ A+  
Sbjct: 270 IDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETA 329

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F +MS K+ + W  +I  Y Q+G  +E++ +   M R G   D FT  + +SS + + ++
Sbjct: 330 FRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASL 389

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           E G Q H   L +G  + ++V N+L+ +Y +C  +  A ++FD +     VSW++++ GY
Sbjct: 390 EEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGY 449

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSL 469
               ++ E + LF +M  + V+ D VT I +L AC   G +E    Y H      G+  +
Sbjct: 450 AQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPI 509

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
               T +   Y++ G ++ A E   +  +   D I W +++SA    GD
Sbjct: 510 DDHYTCMIDLYSRSGRLKEAEEFIKQMPM-HPDAIGWGTLLSACRLRGD 557



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 193/413 (46%), Gaps = 45/413 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL-- 106
           +Q H + + L G   N  + S L+  YA +GL+  +++VF+ +   N ++Y T++  L  
Sbjct: 160 RQFHCQILRL-GFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLR 218

Query: 107 -----------------------------SKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
                                        ++ G   + L  +++M  Q +   + T+  +
Sbjct: 219 CKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSI 278

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           + +C  L     G++IHA +++  +D    VG ALV+ Y KC      E    +   K++
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
            S W +LI    QNG SE++  +F  M+ +G + D  TL +++ S   L SLE G   HC
Sbjct: 339 IS-WTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC 397

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           +A+VS     ++V+ AL+++Y K  S+EDA  LFD+M   D+V W  +++ Y Q G  KE
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKE 457

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS-LI 376
           +++L   M+    + D  T I  +S+ S    +E G     ++ ++     +  H + +I
Sbjct: 458 TIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMI 517

Query: 377 DMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           D+Y     L  A +    +      + W ++          L A RL  +M++
Sbjct: 518 DLYSRSGRLKEAEEFIKQMPMHPDAIGWGTL----------LSACRLRGDMEI 560



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 197/440 (44%), Gaps = 39/440 (8%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L    ALLS  +    L+D   LF  M+ +D V +N +I+ +   G    ++ L   ++
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 327 RSG--FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           R+G   R    T  A V + S + +   G+Q H  +LR G      V + L+ MY +   
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 385 LNCARKIFDSVKTKTVV-------------------------------SWSSMIKGYVTH 413
           +  A+++FD +  K VV                               +W++M+ G+  +
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               +AL  F  M+ +G+ +D  T  +IL AC  + ALE  K +H Y ++   +    V 
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           +A+   Y+KC  I+ A   F   ++  K+II+W ++I  Y ++G   +  +++++M++  
Sbjct: 311 SALVDMYSKCRSIKPAETAF--RRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + PD  T   ++++C N   +EEG   F  +    G         ++V L G+ G +++A
Sbjct: 369 IDPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS--MEPENAGNYVLLSNIYA 651
             L  +M F  D   W  L++        +      EK+++  ++P+      +LS    
Sbjct: 428 HRLFDEMLFH-DQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSR 486

Query: 652 AAGKWNGVAKMRTFLRDRGL 671
           A     G +   +  +D G+
Sbjct: 487 AGFVEKGCSYFHSMQKDHGI 506


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 306/524 (58%), Gaps = 17/524 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N++IS  + NG  E+ FE ++ MR EG   D  T    +++ +++  LE+ +I H +  
Sbjct: 27  FNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDV--LEIKKI-HGLLF 83

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D+ + +AL++ Y K   +E A++ F+++  +D V+WN M++ Y Q G  +  LE
Sbjct: 84  KFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLE 143

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M         FT    +S  + M ++  G+ +H   ++ G D  V+V NSLIDMY 
Sbjct: 144 TFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYG 203

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE---ALRLFSEMKLEGVEVDFVT 437
           +C+ +  A +IF+ ++ K + SW+S+      H+Q  +    LRL   M   G++ D VT
Sbjct: 204 KCKCIEDALEIFEMMREKDIFSWNSIXS---VHEQCGDHDGTLRLLDRMLGAGIQPDLVT 260

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSS------VNTAIFISYAKCGCIEMAGE 491
           +  +LPAC ++ AL H + +HGY +  GL           +  A+   YAKCG +  A  
Sbjct: 261 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHL 320

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F  E++ +KD+ +WN MI  Y  HG  ++  +++++M +  ++PD +TF+G+L+AC +A
Sbjct: 321 VF--ERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHA 378

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G V +GR    +MK  Y   P+ EHY  ++++LGRAG +DEA EL   MP + +  VW  
Sbjct: 379 GFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRA 438

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LL+AC++H    LAE+ A+++  +EPE+ G+YVL+SN+Y A G++  V ++R  +R + +
Sbjct: 439 LLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNV 498

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +KTPGCSWIE+   VH F +AD++HP+A +IY  L  L   + E
Sbjct: 499 RKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTARLCE 542



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 217/454 (47%), Gaps = 21/454 (4%)

Query: 75  YANLGLLSLSQQVFNSITSP-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           Y+    ++ +  +F+  T   N   +  I+      G  E+    Y++M  + + P + T
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           +P  I++C   LD +  +KIH  + K G +    +G ALV  Y+K  G  E+     Q  
Sbjct: 62  FPCAIKAC---LDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKF-GLMEHA----QVA 113

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           F++L  R    WN++++   Q G+ E   E F+ M  E       T+  +L     +  L
Sbjct: 114 FEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDL 173

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             GRI+H  A+   +   ++V+ +L+ MY K   +EDA  +F+ M +KD   WN + S +
Sbjct: 174 NNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVH 233

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL-----RNG 364
            Q G    +L LL  M+ +G + DL T    + + S +  +  G+++H  ++     ++G
Sbjct: 234 EQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDG 293

Query: 365 SDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
            D   V + N++IDMY +C  +  A  +F+ +  K V SW+ MI GY  H    EAL +F
Sbjct: 294 KDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMF 353

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAK 482
           S M    ++ D VT + +L AC + G +   + +L     K  +       T +     +
Sbjct: 354 SRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGR 413

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            G ++ A EL     I++  ++ W ++++A   H
Sbjct: 414 AGQLDEAYELALTMPIEANPVV-WRALLAACRLH 446



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 12/387 (3%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C +   +++IH   +   GL  ++ + S L++ Y   GL+  +Q  F  +   + +L+  
Sbjct: 69  CLDVLEIKKIHG-LLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNA 127

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   ++ G++E  L  +++M  +S+ P+  T   ++   + + D  +G  IH   +K+G
Sbjct: 128 MVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMG 187

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           +DS   V ++L++ Y KC    +  +     + KD+ S WNS+ S+  Q G  + +  L 
Sbjct: 188 YDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS-WNSIXSVHEQCGDHDGTLRLL 246

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK------DLSVNTALL 275
             M   G + D  T+  +L +   L +L  GR +H   +VS   K      D+ +  A++
Sbjct: 247 DRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVI 306

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K  S+ DA ++F++M +KD   WNIMI  Y   G+  E+LE+   M     + D  
Sbjct: 307 DMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 366

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFD 393
           T +  +S+ S    +  G+   A  +++  D   ++  +  +IDM      L+ A ++  
Sbjct: 367 TFVGVLSACSHAGFVSQGRNFLAQ-MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELAL 425

Query: 394 SVKTKT-VVSWSSMIKGYVTHDQSLEA 419
           ++  +   V W +++     H  ++ A
Sbjct: 426 TMPIEANPVVWRALLAACRLHKHAVLA 452



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 11/249 (4%)

Query: 378 MYCECEDLNCARKIF-DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           MY +C  +N A  IF D      V +++++I G++T+    E    + +M+ EGV  D  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T    + AC+++  LE +K +HG   K GL     + +A+   Y K G +E A   F+E 
Sbjct: 61  TFPCAIKACLDV--LE-IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 117

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            I  +D++ WN+M++ YA+ G +    + + +M    V P   T  G+L+     G +  
Sbjct: 118 PI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNN 175

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA- 615
           GRII        GY+       S++++ G+   +++A E+ + M  K D   W  + S  
Sbjct: 176 GRII-HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREK-DIFSWNSIXSVH 233

Query: 616 --CKMHSET 622
             C  H  T
Sbjct: 234 EQCGDHDGT 242



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KC  +  A  +F +      ++  +N++IS +  +G   + F+ Y +M+   V PD  
Sbjct: 2   YSKCNQMNFALSIFSD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 540 TFLGLLTACVNAGLVEEGR-IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           TF   + AC++   +++   ++FK     +G E      +++VN   + G M+ A+   +
Sbjct: 61  TFPCAIKACLDVLEIKKIHGLLFK-----FGLELDVFIGSALVNCYLKFGLMEHAQVAFE 115

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           ++P + D  +W  +++      + E+   T  ++
Sbjct: 116 ELPIR-DVVLWNAMVNGYAQIGQFEMVLETFRRM 148


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 187/604 (30%), Positives = 319/604 (52%), Gaps = 3/604 (0%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           L +LSK G+ ++     K+M    +     +Y  +  +C  L     G  IH ++ +   
Sbjct: 59  LVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK 118

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           +    + + L+  Y  C    + +K   +   K+L S W  +IS   +NG+ EK+  LF 
Sbjct: 119 NPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVS-WVIVISAYAKNGELEKAIRLFS 177

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M+  G   +S   ++LL+S +    LELG+ +H   + +    +++V TA+ +MY +  
Sbjct: 178 DMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCG 237

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            LE AK++FD M  ++ V W  ++  Y Q+   + +LEL   M   G   D F     + 
Sbjct: 238 WLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLK 297

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
               +++ + G+Q+H+++++ G++ +VSV   L+D Y +C D+  A + F  +     VS
Sbjct: 298 VCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS 357

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           WS++I G+    +  + +++F+ ++ EGV ++     ++  AC     L      HG ++
Sbjct: 358 WSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAI 417

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K GL S     +A+   Y+KCG ++ A   F  E ID  D + W ++IS YA HG+ ++ 
Sbjct: 418 KRGLVSYLYGESAMVTMYSKCGRLDYARRAF--ESIDEPDAVAWTAIISGYAYHGNAAEA 475

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
              + +M+   VRP+ +TF+ +LTAC ++GLV E +     M   YG +P+ +HY  M++
Sbjct: 476 LGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMID 535

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
              RAG + EA EL+  MPF+PDA  W  LL  C  H + +L ++ AE L  ++P +   
Sbjct: 536 TYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG 595

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           Y+LL N+Y+A GKW     +R  + +R LKK   CSWI +   VH F   D+ HPQ +AI
Sbjct: 596 YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAI 655

Query: 703 YTIL 706
           Y+ L
Sbjct: 656 YSKL 659



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 194/401 (48%), Gaps = 9/401 (2%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDS 74
           F    A+  RP+       SLL  C  P  L+   QIH+ ++I   L+ N+ + + + + 
Sbjct: 176 FSDMQASGIRPNSAVY--MSLLQSCLGPSFLELGKQIHS-HVIRAQLNANITVETAICNM 232

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G L  ++ VF+ + + N++ +  ++   ++  + E  L ++ +MA++ +   E  +
Sbjct: 233 YVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVF 292

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V++ C  L D+  G +IH+ +VKLG +S   VG  LV+FY+KC G  E+      R  
Sbjct: 293 SIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKC-GDIESAYRSFGRIS 351

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     W++LIS   Q+G+ E   ++F  +R EG   +S    ++ ++     +L +G  
Sbjct: 352 EPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQ 411

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
            H  A+       L   +A+++MYSK   L+ A+  F+ + + D V W  +IS Y   G 
Sbjct: 412 AHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGN 471

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHN 373
             E+L     M   G R +  T IA +++ S    +   KQ   ++ R+ G    +  ++
Sbjct: 472 AAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYD 531

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
            +ID Y     L  A ++ + +  +   +SW S++ G   H
Sbjct: 532 CMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAH 572


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 225/660 (34%), Positives = 355/660 (53%), Gaps = 22/660 (3%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +F L  LC N   L+ +HA ++I HGL  +L+LS+ L+  YA+ G L  ++++FN + + 
Sbjct: 36  TFYLSRLCTNLPSLKTLHASFLI-HGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTR 94

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY---PFVIRSCSCLLDFISGE 151
           +   +  +++           + +Y+ M L S++P    Y     V +SC+   DF +  
Sbjct: 95  DLYCFKVMIRAYFLNDTPSGVVSLYRLMRL-SLHPTPHDYVLFSIVFKSCAESRDFQTLT 153

Query: 152 KIHAQVVK-LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
             H   VK L  DSF  V   LV+ Y K     E  +   +    D    W S+I   VQ
Sbjct: 154 ITHCHFVKSLPSDSF--VLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQ 211

Query: 211 NGKSEKSFELFKLMR---MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
           N  + +   LF  MR   ++G EF  G+L++   +  +L  L  G+ VH   + +  C +
Sbjct: 212 NDCAREGLTLFNRMREAFVDGNEFTVGSLVS---ACTKLNWLHQGKWVHGFVIKNGICVN 268

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMS----DKDRVVWNIMISAYYQSGFPKESLELLM 323
             + T+LL+MY K  +++DA  +FD+ S    D+D V W  MI  Y Q G+P  +LEL  
Sbjct: 269 SYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFK 328

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
               SG   +  T  + +SS + + N   GK +H   ++ G D    V N+L+DMY +C 
Sbjct: 329 DKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDDH-PVRNALVDMYAKCG 387

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            ++ AR +F+++  K VVSW+S+I G+V   ++ EAL LF  M LE    D VT++ IL 
Sbjct: 388 VVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILS 447

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           AC ++G L     +HG ++K GL   S  V TA+   YAKCG    A  +FD   +  K+
Sbjct: 448 ACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDS--MGEKN 505

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            +TW +MI  Y   GD +    L+  M +  V P+ + F  +L AC ++G+V EG  +F 
Sbjct: 506 AVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGEGSRLFN 565

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M     + PS +HYA MV++L RAG+++EA + ++ MP +P   V+G  L  C +HS  
Sbjct: 566 LMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVSVFGAFLHGCGLHSRF 625

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           EL     +K++ + P+ A  YVL+SN+YA+ G+W  V ++R  ++ RGL K PGCS +E+
Sbjct: 626 ELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGMVKQVREMIKQRGLNKVPGCSSVEM 685


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/683 (30%), Positives = 358/683 (52%), Gaps = 79/683 (11%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L LC   + L   +++H+  I  + +  +  L   L+  YA  G L   ++VF+++  
Sbjct: 104 SVLQLCAGLKSLTDGKKVHS-IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEK 162

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N  L+  ++   +K G++++++ ++K M  + +   E   P                  
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---EGKRP------------------ 201

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
                    +S  ++ D L      CD              +D+ S WNS+IS  V NG 
Sbjct: 202 ---------ESASELFDKL------CD--------------RDVIS-WNSMISGYVSNGL 231

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           +E+   ++K M   G + D  T+I++L       +L LG+ VH +A+ S F + ++ +  
Sbjct: 232 TERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNT 291

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL MYSK   L+ A  +F+KM +++ V W  MI+ Y + G+   ++ LL  M + G + D
Sbjct: 292 LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLD 351

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
           +    + + + +   +++ GK +H  +  N     + V N+L+DMY +C  +  A  +F 
Sbjct: 352 VVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFS 411

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           ++  K ++SW++M+                 E+K      D  T+  ILPAC ++ ALE 
Sbjct: 412 TMVVKDIISWNTMV----------------GELK-----PDSRTMACILPACASLSALER 450

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +HGY ++ G +S   V  A+   Y KCG + +A  LFD   I SKD+++W  MI+ Y
Sbjct: 451 GKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD--MIPSKDLVSWTVMIAGY 508

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
             HG  ++    + +M+ + + PD ++F+ +L AC ++GL+E+G   F  MK  +  EP 
Sbjct: 509 GMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPK 568

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHYA MV+LL R G++ +A + ++ +P  PDA +WG LL  C+++ + ELAE  AE++ 
Sbjct: 569 LEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVF 628

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EPEN G YVLL+NIYA A K   V +MR  +  +GL+K PGCSWIEI   V+ F + +
Sbjct: 629 ELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGN 688

Query: 694 Q-SHPQADAIYTILGILELEIME 715
             SHP +  I ++L  +  ++ E
Sbjct: 689 NSSHPHSKKIESLLKKMRRKMKE 711



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 225/506 (44%), Gaps = 83/506 (16%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+ I    Q G  E + EL  +   + +E ++ T  ++L+    LKSL  G+ VH +  
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMC--QKSELETKTYGSVLQLCAGLKSLTDGKKVHSIIK 126

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D ++   L+S Y+    L++ + +FD M  K+  +WN M+S Y + G  KES+ 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 321 LLMCMVRSGFRA------------------------------------------------ 332
           L   MV  G                                                   
Sbjct: 187 LFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 333 ---DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              DL T I+ +   +    +  GK +H+  +++  + +++  N+L+DMY +C DL+ A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F+ +  + VVSW+SMI GY     S  A+ L  +M+ EGV++D V I +IL AC   G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L++ K +H Y     + S   V  A+   YAKCG +E A  +F    +  KDII+WN+M
Sbjct: 367 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVV--KDIISWNTM 424

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           +                      +++PD  T   +L AC +   +E G+ I   +  + G
Sbjct: 425 V---------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRN-G 462

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAEL 627
           Y   +    ++V+L  + G +  AR L   +P K D   W  +++   MH      +A  
Sbjct: 463 YSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATF 521

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAA 653
              +   +EP+       +S +YA +
Sbjct: 522 NEMRDAGIEPDEVS---FISILYACS 544



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 45/265 (16%)

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIF-----DSVKTKTVVSWSSMIKGYVTHDQSL-EA 419
           D+QV+ +N+ I  +C+  DL  A ++        ++TKT  S   +  G     +SL + 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELVCMCQKSELETKTYGSVLQLCAGL----KSLTDG 118

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF-- 477
            ++ S +K   V VD    + ++      G L+  + +         +++   N  ++  
Sbjct: 119 KKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRV--------FDTMEKKNVYLWNF 170

Query: 478 --ISYAKCG------CI--------------EMAGELFDEEKIDSKDIITWNSMISAYAK 515
               YAK G      C+              E A ELFD  K+  +D+I+WNSMIS Y  
Sbjct: 171 MVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFD--KLCDRDVISWNSMISGYVS 228

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +G   +   +Y QM    +  DL T + +L  C N+G +  G+ +     +S  +E    
Sbjct: 229 NGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRIN 287

Query: 576 HYASMVNLLGRAGHMDEARELVKDM 600
              +++++  + G +D A  + + M
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKM 312


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 329/609 (54%), Gaps = 37/609 (6%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD-GGFENEKGMIQRKFK 195
           +I++C  +      ++IH+Q +  G  S   V   ++ F  K + G  E  + +      
Sbjct: 25  LIKTCKSMAQL---KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPG 81

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN++I    + G    +  ++  M   G   D  T   LL+      +++ GR +
Sbjct: 82  PNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGREL 141

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   V   F  ++ V  AL+ +YS    +  A+ +FD+ S  D V WN+MIS Y +S   
Sbjct: 142 HDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQF 201

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            ES++L   M R        T ++ +S+ S +K++  GK++H  V     +    + N+L
Sbjct: 202 DESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENAL 261

Query: 376 IDMYCECEDLNCARKIFDSVKTKTV-------------------------------VSWS 404
           IDMY  C D++ A  IFD++K++ V                               VSW+
Sbjct: 262 IDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWT 321

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI GY+  ++  E L LF EM+   ++ D  T+++IL AC ++GALE  +++  Y  K 
Sbjct: 322 AMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKN 381

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            +   S V  A+   Y  CG +E A  +F+   +  +D I+W ++I   A +G   +   
Sbjct: 382 EIKIDSFVGNALIDMYFNCGNVEKAIRIFN--AMPHRDKISWTAVIFGLAINGYGEEALD 439

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           +++QM ++ + PD +T +G+L AC ++G+V++G+  F  M   +G EP+  HY  MV+LL
Sbjct: 440 MFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLL 499

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAGH+ EA E++K+MP KP++ VWG LL AC++H + E+AE+ A++++ +EPEN   YV
Sbjct: 500 GRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYV 559

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LL NIYAA  +W  + ++R  + DRG+KKTPGCS IE+   VHEF A DQ HPQ+  IY+
Sbjct: 560 LLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYS 619

Query: 705 ILGILELEI 713
            L  + +++
Sbjct: 620 KLDEMSVDL 628


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 198/637 (31%), Positives = 345/637 (54%), Gaps = 6/637 (0%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +  L++ +I  Y        ++QVF+ I   N+  +  +++   +   Y++ L VYK+M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            + +     T   V+ +C+ LLD   G  +  +  +LGF+    V  +L+  + KC G  
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKC-GCL 119

Query: 184 ENEKGMIQR--KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           E  + + +     +D+ S   ++I   V++GK++ + + +  MR +G E D+ T   +L 
Sbjct: 120 EEAESVFRSMGAMRDIIS-VTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILG 178

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +      L  G+ +H   + S    ++SV  AL++MY+K  SL+D+K LF  M  KD V 
Sbjct: 179 ACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS 238

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN MI+AY   G  K++  L   M   G   D++T  + + + ++ K +E G+ +H  + 
Sbjct: 239 WNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRIT 298

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
             G D   ++ N+LI M+  C  L  AR+ F S++ K + +W++M+  Y   D+  +AL 
Sbjct: 299 ARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALF 358

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           L+  M LEG   D  T  +++ +C ++GAL   K++H  S   G      + TA+   YA
Sbjct: 359 LYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYA 418

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  A + FD   I +KD+++W++MI+A A+HG   +  +L   M    +  + +T 
Sbjct: 419 KCGSLADAKKSFD--GISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTA 476

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
             +L AC + G + EG   F  + + +G E  +E+    ++LLGRAG + EA  ++  MP
Sbjct: 477 SSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMP 536

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           FK        LL  CK+H +    +   ++++++EPEN G+YVLL+N+YAAAG+W+ VAK
Sbjct: 537 FKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAK 596

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           +R ++R +G+K+  GCS IE    ++EF   D S+P+
Sbjct: 597 LRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPR 633



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 16/334 (4%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           ++L  C +P  L   + IH ++I+      N+ + + LI  YA  G L  S+ +F ++  
Sbjct: 175 AILGACSSPDFLLDGKHIH-KHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDV 233

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  ++   + +G  +    ++ +M      P   T+  ++ +C+       G  +
Sbjct: 234 KDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRML 293

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H ++   GFD    + + L+  + +C G  E+ +       K     WN++++   Q  K
Sbjct: 294 HVRITARGFDRDFAMQNNLISMFTRC-GSLESARRYFYSIEKKELGAWNTMLAAYAQFDK 352

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            + +  L+K M +EG   D  T  +++ S   L +L  G+ +H  +    F KD+ + TA
Sbjct: 353 GKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTA 412

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MY+K  SL DAK  FD +S+KD V W+ MI+A  Q G  +E+LEL   M   G   +
Sbjct: 413 LVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQN 472

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
             TA + + + S           H   L  G DY
Sbjct: 473 EVTASSVLHACS-----------HGGRLYEGIDY 495



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 8/221 (3%)

Query: 14  GHVK--FLRFPANQTRPHMTATHSFS-LLNLCENPQHLQQ---IHARYIILHGLHQNLIL 67
           GH K  F  F    T  H    ++FS +L  C +P+ L+    +H R I   G  ++  +
Sbjct: 250 GHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVR-ITARGFDRDFAM 308

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            +NLI  +   G L  +++ F SI       + T+L   ++F + +  L +YK M L+  
Sbjct: 309 QNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGF 368

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            P   T+  V+ SC+ L     G+ IH      GF+    +G ALV  Y KC    + +K
Sbjct: 369 TPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKK 428

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
                  KD+ S W+++I+ + Q+G +E++ EL  LM ++G
Sbjct: 429 SFDGISNKDVVS-WSAMIAASAQHGHAEEALELSHLMNLQG 468


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 202/652 (30%), Positives = 355/652 (54%), Gaps = 10/652 (1%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           ++LI  Y+  G    +  +F  + S   L+ +  ++   +      + LL +  M     
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 128 YPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFEN 185
           YP E  +    R+CS   +F+S G+ I   V+K G+   D  VG  L++ ++K  G   +
Sbjct: 165 YPNEYCFAAATRACS-TAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
              + ++  +     W  +I+  +Q G + ++ +LF  M   G E D  TL  ++ +   
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACAN 283

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVW 302
           ++ L LG+ +H  A+      D  V   L++MY+K +   S+  A+ +FD++ D +   W
Sbjct: 284 MELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSW 343

Query: 303 NIMISAYYQ-SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
             MI+ Y Q  G+ +E+L+L   M+ +    + FT  + + + + +  +  G+Q+  + +
Sbjct: 344 TAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV 403

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           + G      V NSLI MY     ++ ARK FD +  K ++S++++I  Y  +  S EAL 
Sbjct: 404 KLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALE 463

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF+E++ +G+     T  ++L    +IG +   + +H   +K GL    SV  A+   Y+
Sbjct: 464 LFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYS 523

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           +CG IE A ++F  E ++ +++I+W S+I+ +AKHG  +Q  +L+ +M +  VRP+ +T+
Sbjct: 524 RCGNIESAFQVF--EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTY 581

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L+AC + GLV EG   FK M   +G  P  EHYA +V++LGR+G + EA + +  MP
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMP 641

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           +K DA VW   L AC++H   EL +  A+ +I  EP +   Y+LLSN+YA+  KW+ V+ 
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSN 701

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +R  ++++ L K  GCSW+E+   VH+F+  D SHP+A  IY  L  L ++I
Sbjct: 702 IRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKI 753



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 262/523 (50%), Gaps = 19/523 (3%)

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F + T+PN L  G +++ ++  G   K +   + M  Q  +P   TY   ++ C     F
Sbjct: 25  FPTFTNPNPLT-GRLIQEINN-GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSF 82

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSRWNSLI 205
             G  +H ++ +          ++L+  Y KC G +E    + +     +DL S W++++
Sbjct: 83  DIGTLVHEKLTQSDLQLDSVTLNSLISLYSKC-GQWEKATSIFRLMGSSRDLIS-WSAMV 140

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           S    N    ++   F  M   G   +        R+    + + +G  +    + + + 
Sbjct: 141 SCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYL 200

Query: 266 K-DLSVNTALLSMYSK-LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           + D+ V   L+ M+ K    L  A  +F+KM +++ V W +MI+   Q G+  E+++L +
Sbjct: 201 QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFL 260

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M+ SG+  D FT    +S+ + M+ +  G+Q+H+  +R+G      V   LI+MY +C 
Sbjct: 261 DMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS 320

Query: 384 ---DLNCARKIFDSVKTKTVVSWSSMIKGYVT---HDQSLEALRLFSEMKLEGVEVDFVT 437
               +  ARKIFD +    V SW++MI GYV    +D+  EAL LF  M L  V  +  T
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDE--EALDLFRGMILTHVIPNHFT 378

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
             + L AC N+ AL   + +  +++KLG +S++ V  ++   YA+ G I+ A + FD   
Sbjct: 379 FSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFD--I 436

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  K++I++N++I AYAK+ +  +  +L+ +++   +     TF  LL+   + G + +G
Sbjct: 437 LFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKG 496

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
             I   + +S G + +Q    +++++  R G+++ A ++ +DM
Sbjct: 497 EQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDM 538



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 197/414 (47%), Gaps = 11/414 (2%)

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           + NG+  K+    + M  +G+  D  T    L+  +  +S ++G +VH     SD   D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKM-SDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
               +L+S+YSK    E A  +F  M S +D + W+ M+S +  +     +L   + M+ 
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECE-DL 385
           +G+  + +   AA  + ST + +  G  +   V++ G     V V   LIDM+ +   DL
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A K+F+ +  +  V+W+ MI   +    + EA+ LF +M   G E D  T+  ++ AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC---GCIEMAGELFDEEKIDSKD 502
            N+  L   + LH  +++ GL     V   +   YAKC   G +  A ++FD+  I   +
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQ--ILDHN 339

Query: 503 IITWNSMISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           + +W +MI+ Y + G +  +   L+  M  + V P+  TF   L AC N   +  G  +F
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
               +  G+        S++++  R+G +D+AR+   D+ F+ +   +  ++ A
Sbjct: 400 THAVK-LGFSSVNCVANSLISMYARSGRIDDARKAF-DILFEKNLISYNTVIDA 451



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 121/294 (41%), Gaps = 47/294 (15%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVF---------------NSITS------- 93
           I+ H +  +   SS L  + ANL  L + +QVF               NS+ S       
Sbjct: 368 ILTHVIPNHFTFSSTL-KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGR 426

Query: 94  -------------PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
                         N + Y T++   +K    E+ L ++ ++  Q M  +  T+  ++  
Sbjct: 427 IDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG 486

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
            + +     GE+IHA+V+K G      V +AL+  Y +C G  E+      + F+D++ R
Sbjct: 487 AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRC-GNIESAF----QVFEDMEDR 541

Query: 201 ----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIV 255
               W S+I+   ++G + ++ ELF  M  EG   +  T I +L +   +  +  G +  
Sbjct: 542 NVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHF 601

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
             +         +     ++ +  +  SL +A    + M  K D +VW   + A
Sbjct: 602 KSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 208/670 (31%), Positives = 355/670 (52%), Gaps = 8/670 (1%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           +T+  +F + +L E  Q  Q   AR ++    ++N      +I  Y   G L++++++F+
Sbjct: 42  ITSRFNFMIKDLSERGQLCQ---ARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFD 98

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
                  + + T++   SK   +     ++ +M      P   TY  ++  C+ L     
Sbjct: 99  DTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKE 158

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
             + HAQ+VKLG      V + L++ Y K  GG ++ + +           +N +I+   
Sbjct: 159 LYQAHAQIVKLGHHLNHRVCNTLLDSYFKT-GGLDSARRLFLEMCGWDSVSFNVMITGYA 217

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            NG +E++ ELF  M+  G +    T   ++ ++V L     G+ +H   V + F +++ 
Sbjct: 218 NNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVF 277

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V  A L  YSK   + + + LF++M + D V +N++I+AY   G  KES++L   +  + 
Sbjct: 278 VGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTT 337

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           F    F     +S  ++  +++ G+Q+HA V+ + +D    V NSL+DMY +C     A 
Sbjct: 338 FDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEAD 397

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           +IF  + +++ V W++MI   V        L+LF EM+   V  D  T   +L A  N+ 
Sbjct: 398 RIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLA 457

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           ++   K LH   ++ G  ++ S   A+   YA C  I+ A + F+E  +  ++++TWN++
Sbjct: 458 SILLGKQLHSCVIRSGFMNVYS-GCALLDMYANCASIKDAIKTFEE--MSERNVVTWNAL 514

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           +SAYA++GD     K + +M  S  +PD ++FL +LTAC +  LVEEG   F +M   Y 
Sbjct: 515 LSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYN 574

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P +EHY +MV+ L R+G  DEA +L+  MPF+PD  VW  +L++C++H    LA   A
Sbjct: 575 LAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAA 634

Query: 630 EKLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
            +L +M+   +A  YV +SNI+A AG+W+ V K++  +RDRG++K P  SW+EI   VH 
Sbjct: 635 GQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHV 694

Query: 689 FWAADQSHPQ 698
           F A D  HPQ
Sbjct: 695 FSANDDKHPQ 704



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 177/450 (39%), Gaps = 94/450 (20%)

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           FRA+    +   SS  T++       + A +++ G D   S  N +I    E   L  AR
Sbjct: 9   FRANQLKTLHGASSRQTLQTC-----IDARIVKTGFDPITSRFNFMIKDLSERGQLCQAR 63

Query: 390 KIFDSVKT-------------------------------KTVVSWSSMIKGYVTHDQSLE 418
           ++ D +                                 +TVV+W++MI  Y   ++  +
Sbjct: 64  QLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGD 123

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           A +LF+EM   G + D+VT I +L  C ++   + +   H   +KLG +    V   +  
Sbjct: 124 AFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLD 183

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
           SY K G ++ A  LF E  +   D +++N MI+ YA +G   +  +L+ +M+    +P  
Sbjct: 184 SYFKTGGLDSARRLFLE--MCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSD 241

Query: 539 ITFLGLLTACV---------------------------NAGL--------VEEGRIIFKE 563
            TF  +++A V                           NA L        V E R +F E
Sbjct: 242 FTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNE 301

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP---LLSACKMHS 620
           M E  G       Y  ++      G + E+ +L +++ F    R   P   +LS      
Sbjct: 302 MPELDGVS-----YNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSL 356

Query: 621 ETELA-ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
           + ++  +L A+ ++SM   +      L ++YA  GK+      R FLR       P  + 
Sbjct: 357 DLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEAD--RIFLRLSSRSTVPWTAM 414

Query: 680 IEIG----------KLVHEFWAADQSHPQA 699
           I             KL +E   A+ S  QA
Sbjct: 415 ISANVQRGLHENGLKLFYEMRRANVSADQA 444


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 290/509 (56%), Gaps = 7/509 (1%)

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           N  S     +  L+     E D      LL+    L  L+ G++VH   + S F  DL +
Sbjct: 69  NPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVI 128

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES---LELLMCMVR 327
             ++L MY+K  SLE A+ +FD+M  KD V W  MI+ Y Q G+   +   L L + MVR
Sbjct: 129 KNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVR 188

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G R + F   + V     + +   GKQ+H    + G    V V +SL+DMY  C +L  
Sbjct: 189 DGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRE 248

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           +R +FD +++K  VSW+++I G+    +  EAL LF +M+ EG      T   +L +   
Sbjct: 249 SRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSST 308

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            G+LE  K+LH + MK G   +  V   +   YAK G I  A ++FD  ++   D+++ N
Sbjct: 309 TGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFD--RLVKVDVVSCN 366

Query: 508 SMISAYAKHGDWSQCFKLYTQMK-QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           SM+  YA+HG   +  +L+ +M    ++ P+ ITFL +LTAC +AGL++EG   F+ MK+
Sbjct: 367 SMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK 426

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            YG EP   HY ++V+L GRAG +D+A+  +++MP +P+A +WG LL A KMH  TE+  
Sbjct: 427 -YGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGA 485

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
             A+K++ ++P   G + LLSNIYA+AG+W  VAK+R  ++D GLKK P CSW+EI   V
Sbjct: 486 YAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSV 545

Query: 687 HEFWAADQSHPQADAIYTILGILELEIME 715
           H F A D SHPQ + +Y +   L  +I E
Sbjct: 546 HIFSANDISHPQKNKVYEMWENLNQKIKE 574



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 222/448 (49%), Gaps = 11/448 (2%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           S+ P    Y  +++ C+ L     G+ +H  ++   F +   + ++++  Y KC G  E 
Sbjct: 86  SLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKC-GSLEI 144

Query: 186 EKGMIQRK-FKDLKSRWNSLISLAVQNG---KSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            + +      KD+ + W S+I+   Q+G    +  +  LF  M  +G   +   L +L++
Sbjct: 145 ARQVFDEMCVKDVVT-WTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVK 203

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
               L S   G+ +H       F +++ V ++L+ MY++   L +++++FD++  K+ V 
Sbjct: 204 CCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVS 263

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN +IS + + G  +E+L L + M R GF A  FT  A + S ST  ++E GK +HA+++
Sbjct: 264 WNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMM 323

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++G      V N+L+ MY +  ++  A+K+FD +    VVS +SM+ GY  H    EA+ 
Sbjct: 324 KSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVE 383

Query: 422 LFSEMKL-EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           LF EM L   +E + +T +++L AC + G L+   Y      K GL    S  T +   +
Sbjct: 384 LFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLF 443

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ-CFKLYTQMKQSDVRPDLI 539
            + G ++ A    +E  I+    I W +++ A   H +     +     ++     P   
Sbjct: 444 GRAGLLDQAKSFIEEMPIEPNATI-WGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAH 502

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKES 567
           T L  + A  +AG  ++   + KEMK+S
Sbjct: 503 TLLSNIYA--SAGQWKDVAKVRKEMKDS 528



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 175/365 (47%), Gaps = 14/365 (3%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG---EYEKTLL 117
              +L++ ++++  YA  G L +++QVF+ +   + + + +++   S+ G        L+
Sbjct: 122 FRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALV 181

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           ++ +M    + P E     +++ C  L   + G++IH    K GF     VG +LV+ Y 
Sbjct: 182 LFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYA 241

Query: 178 KCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
           +C  G   E  ++   F +L+S+    WN+LIS   + G+ E++  LF  M+ EG     
Sbjct: 242 RC--GELRESRLV---FDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATE 296

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T   LL S+    SLE G+ +H   + S       V   LL MY+K  ++ DAK +FD+
Sbjct: 297 FTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDR 356

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELL-MCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +   D V  N M+  Y Q G  KE++EL    M+      +  T ++ +++ S    ++ 
Sbjct: 357 LVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDE 416

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYV 411
           G      + + G + ++S + +++D++     L+ A+   + +  +   + W +++    
Sbjct: 417 GLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASK 476

Query: 412 THDQS 416
            H  +
Sbjct: 477 MHKNT 481



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 11/307 (3%)

Query: 8   ACSLQSGHVKFLRFPANQTRPHMTATHSF----SLLNLCENPQHLQQIHARYIILHGLHQ 63
           A S  +  V FL    +  RP+  A  S       L  C + + +     +Y    G  +
Sbjct: 173 ASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKY----GFQE 228

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+ + S+L+D YA  G L  S+ VF+ + S N + +  ++   ++ GE E+ L ++ +M 
Sbjct: 229 NVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQ 288

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            +     E TY  ++ S S       G+ +HA ++K G      VG+ L+  Y K  G  
Sbjct: 289 REGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAK-SGNI 347

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRS 242
            + K +  R  K      NS++    Q+G  +++ ELF ++M     E +  T +++L +
Sbjct: 348 CDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTA 407

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVV 301
                 L+ G     +         LS  T ++ ++ +   L+ AK   ++M  + +  +
Sbjct: 408 CSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATI 467

Query: 302 WNIMISA 308
           W  ++ A
Sbjct: 468 WGALLGA 474


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 191/544 (35%), Positives = 292/544 (53%), Gaps = 32/544 (5%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W S+I     +G    S   F  M   G   D     ++L+S   +K L  G  VH   +
Sbjct: 74  WKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCII 133

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDA-----------------------------KMLF 291
                 DL    AL++MYSK  SLE+                              + +F
Sbjct: 134 RLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVF 193

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           + M  +D V WN +IS   Q+G  +++L ++  M  +  R D FT  + +   +   N+ 
Sbjct: 194 EMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLL 253

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GK++H   +RNG D  V + +SLIDMY +C  ++ + ++F  +     +SW+S+I G V
Sbjct: 254 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCV 313

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    E L+ F +M +  ++ + V+  +I+PAC ++  L   K LHGY ++   +    
Sbjct: 314 QNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVF 373

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           + +A+   YAKCG I  A  +FD  K++  D+++W +MI  YA HG       L+ +M+ 
Sbjct: 374 IASALVDMYAKCGNIRTARWIFD--KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEV 431

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
             V+P+ + F+ +LTAC +AGLV+E    F  M + Y   P  EHYA++ +LLGR G ++
Sbjct: 432 EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLE 491

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EA E + DM  +P   VW  LL+AC++H   ELAE  ++KL +++P+N G YVLLSNIY+
Sbjct: 492 EAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYS 551

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           AAG+W    K+R  +RD+G+KK P CSWIEI   VH F A D+SHP  D I   L +L L
Sbjct: 552 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL-L 610

Query: 712 EIME 715
           E ME
Sbjct: 611 EQME 614



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 263/525 (50%), Gaps = 55/525 (10%)

Query: 40  NLC----ENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           NLC    +NP  ++      Q+HA+  IL     +  L S ++  Y+NL LL  S  +FN
Sbjct: 6   NLCKTLLQNPSSVKSKSQAKQLHAQ--ILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFN 63

Query: 90  SITSP-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           S+ SP  +L + +I++  +  G +  +L  + QM     YP  + +P V++SC+ + D  
Sbjct: 64  SLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLR 123

Query: 149 SGEKIHAQVVKL--GFDSFDDVGDALVEFYIK-------------------CDGGFENEK 187
            GE +H  +++L  GFD +    +AL+  Y K                    D   + EK
Sbjct: 124 FGESVHGCIIRLGMGFDLY--TCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEK 181

Query: 188 -----GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
                G +++ F+ +  R    WN++IS   QNG  E +  + + M       DS TL +
Sbjct: 182 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 241

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L    E  +L  G+ +H  A+ + +  D+ + ++L+ MY+K   ++D+  +F  +   D
Sbjct: 242 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHD 301

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            + WN +I+   Q+G   E L+    M+ +  + +  +  + + + + +  +  GKQ+H 
Sbjct: 302 GISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG 361

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            ++R+  D  V + ++L+DMY +C ++  AR IFD ++   +VSW++MI GY  H  + +
Sbjct: 362 YIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYD 421

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYLHG----YSMKLGLNSLSSVN 473
           A+ LF  M++EGV+ ++V  + +L AC + G ++   KY +     Y +  GL   ++V 
Sbjct: 422 AISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVA 481

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             +     + G +E A E   +  I+    + W+++++A   H +
Sbjct: 482 DLL----GRVGRLEEAYEFISDMHIEPTGSV-WSTLLAACRVHKN 521


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 211/663 (31%), Positives = 352/663 (53%), Gaps = 29/663 (4%)

Query: 28  PHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           P  T+ HS+S+               ++ +L G   ++ +SS+L+  YA  G L  + ++
Sbjct: 130 PVGTSVHSYSV---------------KFGLLAG-DGSVAVSSSLVYMYARCGSLGDAVKL 173

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM----ALQSMYPAEDTYPFVIRSCSC 143
           F+ +   + + +  ++    + GE  K +    QM          P   T    + +C  
Sbjct: 174 FDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGV 233

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNS 203
           L +  +G  +H   VK G      V  AL   Y KCD   +      +   KD+ S W  
Sbjct: 234 LGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVS-WTG 292

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           LI    + G + ++ ELF+ M   G + D   +  +L       ++  G+  H V +  +
Sbjct: 293 LIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRN 352

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL-- 321
           F   + +  +L+SMY K   ++ A  +F  +  +D   W++M++ Y ++G   + LEL  
Sbjct: 353 FGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYR 412

Query: 322 -LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
            + C     F  D+ + ++A+SS S +  +  G+ +H   ++   D + S+ NSLI MY 
Sbjct: 413 QMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLD-ENSITNSLIGMYG 471

Query: 381 ECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            C +   A KIF   K  + VV+W+++I  Y    +S +AL L+ +M  E V+ +  T+I
Sbjct: 472 RCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLI 531

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            ++ AC N+ ALEH + LH Y   +GL S  S++TA+   Y KCG +  A  +FD   + 
Sbjct: 532 TVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDS--ML 589

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D++TWN MIS Y  HG+ +Q  KL+++M+   ++P+ +TFL +L+AC +AGLV+EGR 
Sbjct: 590 QRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRK 649

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +F  M   Y  EP+ +HYA MV+LLG++G + EA +LV  MP KPD  VWG LLSACK+H
Sbjct: 650 LFIRMG-GYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVH 708

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              E+    A+K  S +P N G Y+L+SN Y +A KW+ + K+R  +++ G++K  G S 
Sbjct: 709 DNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWSA 768

Query: 680 IEI 682
           +++
Sbjct: 769 VDV 771



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 158/580 (27%), Positives = 284/580 (48%), Gaps = 23/580 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL      ++ L+ +Y++ GL   +   F++   P++ L+ ++L++     +++  L  +
Sbjct: 42  GLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASDFDSALSAH 101

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD---VGDALVEFY 176
           ++M      P+  T P    + + L     G  +H+  VK G  + D    V  +LV  Y
Sbjct: 102 RRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMY 161

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSF----ELFKLMRMEG 228
            +C        G   + F ++  R    W +++S  V+NG+  K      ++ +L    G
Sbjct: 162 ARC-----GSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSG 216

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           A  +S T+ + L +   L  L  GR +H  AV         V +AL SMYSK    EDA 
Sbjct: 217 ARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDAC 276

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +LF ++++KD V W  +I AY + G  +E++EL   M +SG + D       +S + +  
Sbjct: 277 ILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSA 336

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N+  GK  HA ++R      V + NSLI MY + E ++ A  +F  +  +   SWS M+ 
Sbjct: 337 NVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVA 396

Query: 409 GYVTHDQSLEALRLFSEMKLEGVE---VDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           GY      ++ L L+ +M+    +    D  ++++ + +C  +G L   + +H YS+K  
Sbjct: 397 GYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCL 456

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L+  S  N+ I + Y +CG  E+A ++F   K+  +D++TWN++IS+Y+  G  +    L
Sbjct: 457 LDENSITNSLIGM-YGRCGNFELACKIFAVAKL-RRDVVTWNALISSYSHVGRSNDALSL 514

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           Y QM   DV+P+  T + +++AC N   +E G ++   +K + G E       ++V++  
Sbjct: 515 YGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVK-NMGLESDVSISTALVDMYT 573

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           + G +  AR +   M  + D   W  ++S   MH E   A
Sbjct: 574 KCGQLGTARGIFDSM-LQRDVVTWNVMISGYGMHGEANQA 612



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 152/306 (49%), Gaps = 14/306 (4%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H +A  S           L+S YS       A + F      D  +WN ++ +++ +  
Sbjct: 34  LHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASD 93

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG---SDYQVSV 371
              +L     M  SG R   FTA  A S+ + +  +  G  +H+  ++ G    D  V+V
Sbjct: 94  FDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAV 153

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KL-- 428
            +SL+ MY  C  L  A K+FD +  + VV+W++++ G V + +  + +    +M +L  
Sbjct: 154 SSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAG 213

Query: 429 -EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
             G   +  T+ + L AC  +G L   + LHGY++K G+   + V +A+F  Y+KC   E
Sbjct: 214 DSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTE 273

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  LF E  +  KD+++W  +I AY + G   +  +L+ +M+QS ++PD +     L +
Sbjct: 274 DACILFPE--LTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEV-----LVS 326

Query: 548 CVNAGL 553
           CV +GL
Sbjct: 327 CVLSGL 332



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 19/273 (6%)

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+S+++ +        AL     M+  G      T      A   + AL     +H YS+
Sbjct: 81  WNSLLRSHHCASDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSV 140

Query: 463 KLGL---NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           K GL   +   +V++++   YA+CG +  A +LFDE  +  +D++ W +++S   ++G+ 
Sbjct: 141 KFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDE--MVERDVVAWTAVVSGCVRNGEC 198

Query: 520 SQCFKLYTQM----KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQ 574
            +      QM      S  RP+  T    L AC   G +  GR +    +KE  G     
Sbjct: 199 GKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKE--GIRDCA 256

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLI 633
              +++ ++  +    ++A  L  ++  K D   W  L+ A C+     E  EL  E   
Sbjct: 257 LVVSALFSMYSKCDMTEDACILFPELTEK-DVVSWTGLIGAYCRRGLAREAVELFQEMEQ 315

Query: 634 S-MEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           S ++P+     VL+S + +  G    V + + F
Sbjct: 316 SGLQPDE----VLVSCVLSGLGSSANVNRGKAF 344


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 204/670 (30%), Positives = 363/670 (54%), Gaps = 12/670 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + +   G  +++ + ++L+D Y         + +F+ +   N + + ++L   ++
Sbjct: 124 RQVHCQSL-KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ + +  QM ++ + P   T+  V+ + +       G ++HA +VK GF+    V
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +AL+  Y+K +   + E        +D    WN +I      G   + F++F  MR+ G
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRD-SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAG 301

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +         L+   + + L   + +HC  V + +     + TAL+  YSK +S+++A 
Sbjct: 302 VKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAF 361

Query: 289 MLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            LF  M+D   + V W  MI  + Q+   K++++L   M R G R + FT     S++  
Sbjct: 362 KLFS-MADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFT----YSTVLA 416

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            K      Q+HA +++   +   SV  +L+D Y +  ++  + ++F S+  K +V+WS+M
Sbjct: 417 GKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAM 476

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-LEHVKYLHGYSMKLG 465
           + G      S +A+ +F ++  EGV+ +  T  +++ AC +  A +EH K +H  ++K G
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            ++   V++A+   Y+K G IE A ++F  +  + +DI++WNSMI+ Y +HGD  +  ++
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQ--EERDIVSWNSMITGYGQHGDAKKALEV 594

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M+   +  D +TF+G+LTAC +AGLVEEG   F  M + Y  +   EHY+ MV+L  
Sbjct: 595 FQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYS 654

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG  D+A +++  MPF     +W  LL+AC++H   EL +L AEKL+S++P +A  YVL
Sbjct: 655 RAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNI+A AG W   A +R  + +R +KK  GCSWIEI   +  F A D SHP +D +Y  
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAK 774

Query: 706 LGILELEIME 715
           L  L +++ +
Sbjct: 775 LEELSIKLKD 784



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/548 (25%), Positives = 267/548 (48%), Gaps = 19/548 (3%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           + Q+F+     +   Y  +L + S+     + L ++K +    +     T    ++ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWN 202
           L D + G ++H Q +K GF     VG +LV+ Y+K +  FE+ +G+  +   K++ S W 
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTE-DFEDGRGIFDEMGIKNVVS-WT 174

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           SL+S   +NG +++   L   M+MEG   +  T   +L +  +   +E G  VH + V +
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F     V  AL+ MY K   + DA+ +FD M  +D V WNIMI  Y   GF  E  ++ 
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M  +G +        A+   S  + + + KQ+H  V++NG ++   +  +L+  Y +C
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKC 354

Query: 383 EDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
             ++ A K+F        VV+W++MI G+V ++ + +A+ LF +M  EGV  +  T   +
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 442 L---PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           L   P+ +       +  LH   +K     + SV TA+  +Y K G +  +  +F    I
Sbjct: 415 LAGKPSSL-------LSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF--YSI 465

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEG 557
            +KDI+ W++M++  A+  D  +  +++ Q+ +  V+P+  TF  ++ AC  +A  VE G
Sbjct: 466 PAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHG 525

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           + I     +S G   +    ++++ +  + G+++ A ++      + D   W  +++   
Sbjct: 526 KQIHATAVKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYG 583

Query: 618 MHSETELA 625
            H + + A
Sbjct: 584 QHGDAKKA 591


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/607 (31%), Positives = 324/607 (53%), Gaps = 16/607 (2%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           +  ++++ +  G + +TL +Y  MA   ++    TYP ++++C+ L     G  +H  V+
Sbjct: 14  WNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTMLHGHVL 73

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKS 214
           KLGF +   V  ALV+ Y KC     +     ++ F ++  R    WN+++S   +    
Sbjct: 74  KLGFQADTFVQTALVDMYSKC-----SHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSM 128

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE---LGRIVHCVAV-VSDFCKDLSV 270
           +++  L K M + G E  + T +++L     L S E   LG+ +HC  + +     ++S+
Sbjct: 129 DQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSL 188

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L+ MY +   +++A+ +FD M +K  + W  MI  Y + G   E+  L   M     
Sbjct: 189 ANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSV 248

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D    +  +S    ++++     +H+ VL+ G + +  V N LI MY +C +L  AR+
Sbjct: 249 GIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARR 308

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           IFD +  K+++SW+SMI GYV      EAL LF  M    +  +  T+  ++ AC ++G+
Sbjct: 309 IFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGS 368

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   + +  Y    GL S   V T++   Y+KCG I  A E+F  E++  KD+  W SMI
Sbjct: 369 LSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVF--ERVTDKDLTVWTSMI 426

Query: 511 SAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           ++YA HG  ++   L+ +M  ++ + PD I +  +  AC ++GLVEEG   FK M++ +G
Sbjct: 427 NSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKDFG 486

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
             P+ EH   +++LLGR G +D A   ++ MP    A+VWGPLLSAC++H   EL EL  
Sbjct: 487 ITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGELAT 546

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
            +L+   P ++G+YVL++N+Y + GKW     MR  +  +GL K  G S +E+    H F
Sbjct: 547 VRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTDTYHTF 606

Query: 690 WAADQSH 696
              +QS 
Sbjct: 607 AVGNQSQ 613



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 232/496 (46%), Gaps = 24/496 (4%)

Query: 38  LLNLCEN-P--QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C N P  QH   +H   + L G   +  + + L+D Y+    ++ ++QVF+ +   
Sbjct: 52  LLKACANLPSIQHGTMLHGHVLKL-GFQADTFVQTALVDMYSKCSHVASARQVFDEMPQR 110

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF---ISGE 151
           + + +  ++   S+    ++ L + K+M +    P   T+  ++   S L  F   + G+
Sbjct: 111 SVVSWNAMVSAYSRRSSMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGK 170

Query: 152 KIHAQVVKLGFDSFD-DVGDALVEFYIK-CDGGFENEKGMIQRKFKDLKSR-----WNSL 204
            IH  ++KLG    +  + ++L+  Y++ C     +E     RK  DL        W ++
Sbjct: 171 SIHCCLIKLGIVYLEVSLANSLMGMYVQFC---LMDEA----RKVFDLMDEKSIISWTTM 223

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I   V+ G + +++ LF  M+ +    D    +NL+   ++++ L L   VH + +    
Sbjct: 224 IGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGC 283

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
            +   V   L++MY+K  +L  A+ +FD + +K  + W  MI+ Y   G P E+L+L   
Sbjct: 284 NEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRR 343

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+R+  R +  T    VS+ + + ++  G+++   +  NG +    V  SLI MY +C  
Sbjct: 344 MIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGS 403

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL-EGVEVDFVTIINILP 443
           +  AR++F+ V  K +  W+SMI  Y  H    EA+ LF +M   EG+  D +   ++  
Sbjct: 404 IVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFL 463

Query: 444 ACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           AC + G +E  +KY        G+       T +     + G +++A         D + 
Sbjct: 464 ACSHSGLVEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQA 523

Query: 503 IITWNSMISAYAKHGD 518
            + W  ++SA   HG+
Sbjct: 524 QV-WGPLLSACRIHGN 538



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +++ +W+ MI+    +    + L ++S M   GV  + +T   +L AC N+ +++H   L
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           HG+ +KLG  + + V TA+   Y+KC  +  A ++FDE  +  + +++WN+M+SAY++  
Sbjct: 69  HGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDE--MPQRSVVSWNAMVSAYSRRS 126

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
              Q   L  +M      P   TF+ +L+   N
Sbjct: 127 SMDQALSLLKEMWVLGFEPTASTFVSILSGYSN 159


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 315/554 (56%), Gaps = 11/554 (1%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           +H  V KLGF +   V + L++ Y  C  GF       +R F ++  R    +N++I   
Sbjct: 155 LHPVVTKLGFGASVVVCNTLLDAY--CKQGF---IAAARRVFLEMPHRDSITYNAMIMGC 209

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            + G+  ++ ELF  MR EG +    T  +LL     +  L LGR +H + V ++   ++
Sbjct: 210 SRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNV 269

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            VN ALL  YSK  SL D K LFD+MS++D V +N+MISA   +     +L+L   M   
Sbjct: 270 FVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTL 329

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           GF        + +S    + +I+ G+Q+HA ++ +G   +  V N+LIDMY +C  L+ A
Sbjct: 330 GFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAA 389

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           + IF     KT +SW+++I G V + Q+ EAL+LF +M+  G+  D  T  +I+ +  ++
Sbjct: 390 KTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSL 449

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             +   + LH Y  K G        +A+   YAKCGC++ A   F+E  +  K+ ITWN+
Sbjct: 450 AVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNE--MPEKNSITWNA 507

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +ISAYA++G      +++  M    + PD +TFL +L AC + GL EE    F  M+  Y
Sbjct: 508 VISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYY 567

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
              P +EHY+ +++ LGRAG  D+ ++++ +MPF+ D  +W  +L +C+++   +LA + 
Sbjct: 568 SMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVA 627

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           AEKL +M P +A  YV+LSNIYA AG W G A+++  +RDRG+KK  G SW+EI + ++ 
Sbjct: 628 AEKLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYM 687

Query: 689 FWAADQSHPQADAI 702
           F + D ++P  D I
Sbjct: 688 FSSNDHTNPMIDEI 701



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 235/466 (50%), Gaps = 15/466 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   ++++ + L+D+Y   G ++ +++VF  +   +S+ Y  ++   S+ G + + L ++
Sbjct: 163 GFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELF 222

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M  + +  +  T+  ++   + ++D   G +IH   V+        V +AL++FY KC
Sbjct: 223 AAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKC 282

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           D       G +++ F ++  R    +N +IS    N     + +LF+ M+  G  FD  T
Sbjct: 283 D-----SLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLG--FDRRT 335

Query: 236 L--INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
           L   +LL     L  +++GR +H   ++     +  V  AL+ MYSK   L+ AK +F  
Sbjct: 336 LPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAY 395

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
            SDK  + W  +I+   Q+G  +E+L+L   M R+G   D  T  + + S S++  I  G
Sbjct: 396 KSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIG 455

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           +Q+HA + ++G    V   ++L+DMY +C  L+ A + F+ +  K  ++W+++I  Y  +
Sbjct: 456 RQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 515

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSV 472
            Q+  A+R+F  M   G+  D VT +++L AC + G A E +KY         ++     
Sbjct: 516 GQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEH 575

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            + +  +  + GC +   ++ DE   +  D I W+S++ +   +G+
Sbjct: 576 YSCVIDTLGRAGCFDKIQKVIDEMPFED-DPIIWSSILHSCRIYGN 620



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 152/333 (45%), Gaps = 24/333 (7%)

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK--QMHA 358
            W IM+      G   +++ L   M+R G       A     +I+T+ N+       +H 
Sbjct: 104 TWTIMMRMLPADGRGSDAVSLFRDMLREG------EASPDDVTITTVLNVPGCDVGTLHP 157

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            V + G    V V N+L+D YC+   +  AR++F  +  +  +++++MI G     +  E
Sbjct: 158 VVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGE 217

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF+ M+ EGV+    T  ++L     +  L   + +HG  ++   +    VN A+  
Sbjct: 218 ALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLD 277

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC----FKLYTQMKQSDV 534
            Y+KC  +    +LFDE  +  +D +++N MISA +    W++C     +L+  M+    
Sbjct: 278 FYSKCDSLGDLKQLFDE--MSERDNVSYNVMISACS----WNRCGGMALQLFRDMQTLGF 331

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
               + +  LL+       ++ GR I  ++   +G         +++++  + G +D A+
Sbjct: 332 DRRTLPYASLLSVAGALPHIKIGRQIHAQLI-LHGLTLEDFVGNALIDMYSKCGMLDAAK 390

Query: 595 ELVKDMPFKPD--ARVWGPLLSACKMHSETELA 625
            +     +K D  A  W  L++ C  + + E A
Sbjct: 391 TI---FAYKSDKTAISWTALITGCVQNGQNEEA 420



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL++     H+   +QIHA+ +ILHGL     + + LID Y+  G+L  ++ +F   + 
Sbjct: 340 SLLSVAGALPHIKIGRQIHAQ-LILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSD 398

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             ++ +  ++    + G+ E+ L ++  M    + P   T   +++S S L     G ++
Sbjct: 399 KTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQL 458

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           HA + K G       G AL++ Y KC  G  +E     R F ++  +    WN++IS   
Sbjct: 459 HAYLTKSGHMPSVFSGSALLDMYAKC--GCLDEA---IRTFNEMPEKNSITWNAVISAYA 513

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           Q G+++ +  +F  M   G   D  T +++L
Sbjct: 514 QYGQAKNAIRMFDSMLHCGLCPDPVTFLSVL 544



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINIL 442
           DL+ A+ +F +   +   +W+ M++      +  +A+ LF +M  EG    D VTI  +L
Sbjct: 86  DLSAAKALFSAAARRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL 145

Query: 443 --PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
             P C        V  LH    KLG  +   V   +  +Y K G I  A  +F E  +  
Sbjct: 146 NVPGC-------DVGTLHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLE--MPH 196

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           +D IT+N+MI   ++ G   +  +L+  M++  V     TF  LLT  V  G+V+
Sbjct: 197 RDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLT--VATGMVD 249



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA Y+   G   ++   S L+D YA  G L  + + FN +   NS+ +  ++   ++
Sbjct: 456 RQLHA-YLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQ 514

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           +G+ +  + ++  M    + P   T+  V+ +C
Sbjct: 515 YGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAAC 547


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 177/483 (36%), Positives = 283/483 (58%), Gaps = 41/483 (8%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV----- 326
           T ++ + +  A  E A +LF +++D +  ++N MI AY  +     ++ +   M+     
Sbjct: 50  TKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHG 109

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            +    D FT    V S + +   + GKQ+H +V + G      V NSL++MY +C+ L+
Sbjct: 110 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 169

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVT--------------HDQSL--------------- 417
            A K+F+ +  +  VSW+++I G+V                D+++               
Sbjct: 170 DAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGC 229

Query: 418 --EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +AL  F  M++ G+E D ++++++LPAC  +GALE  K++H Y+ K G      V  A
Sbjct: 230 YADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNA 289

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG I+    LFD+  ++ +D+I+W++MI   A HG   +  +L+ +M+++ + 
Sbjct: 290 LIEMYAKCGSIDEGRRLFDQ--MNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIE 347

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P++ITF+GLL+AC +AGL+ EG   F+ MK  Y  EP  EHY  +VNLLG +G +D+A E
Sbjct: 348 PNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALE 407

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           L+K MP KPD+ +WG LLS+C+ HS  E+A +  E L+ +EP + GNYVLLSN+YA  GK
Sbjct: 408 LIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGK 467

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           W+GV++MR  +R + +KKTPGCS IE+  +V EF + D S P + AIY +L +L   +M 
Sbjct: 468 WDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLL---VMH 524

Query: 716 GRR 718
            RR
Sbjct: 525 QRR 527



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 179/366 (48%), Gaps = 49/366 (13%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           +L  C N   L++IHA +I+   L Q+  L + ++D   +      +  +F  +  PN+ 
Sbjct: 20  ILKNCPNIVELKKIHA-HIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAF 78

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQS-----MYPAEDTYPFVIRSCSCLLDFISGEK 152
           LY  +++       Y   + VYKQM   S     ++P + T+PFV++SC+ L+ +  G++
Sbjct: 79  LYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 138

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H  V K G  S   V ++LVE Y+KCD   +  K   +   +D  S WN+LIS  V+ G
Sbjct: 139 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVS-WNTLISGHVRLG 197

Query: 213 KSEK-------------------------------SFELFKLMRMEGAEFDSGTLINLLR 241
           +  +                               + E F+ M+M G E D  +L+++L 
Sbjct: 198 QMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLP 257

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +  +L +LELG+ +H  A  + F +++ V  AL+ MY+K  S+++ + LFD+M+++D + 
Sbjct: 258 ACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVIS 317

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W+ MI      G   E++EL   M ++    ++ T +  +S+ +           HA +L
Sbjct: 318 WSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACA-----------HAGLL 366

Query: 362 RNGSDY 367
             G  Y
Sbjct: 367 NEGLRY 372



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 199/431 (46%), Gaps = 54/431 (12%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE-KGM 189
           ED +  ++++C  +++    +KIHA +VK        +   +V+    C+   E E   +
Sbjct: 14  EDIFVPILKNCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDV---CNHHAETEYANL 67

Query: 190 IQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLM----RMEGAEF-DSGTLINLLRST 243
           + ++  D  +  +N++I     N     +  ++K M      E   F D  T   +++S 
Sbjct: 68  LFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSC 127

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L   +LG+ VH          +  V  +L+ MY K  SL+DA  +F++M+++D V WN
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWN 187

Query: 304 IMISAYYQ--------------------------SGFPK-----ESLELLMCMVRSGFRA 332
            +IS + +                          SG+ +     ++LE    M   G   
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  + ++ + + + +  +E GK +H    + G    + V N+LI+MY +C  ++  R++F
Sbjct: 248 DEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLF 307

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL- 451
           D +  + V+SWS+MI G   H ++ EA+ LF EM+   +E + +T + +L AC + G L 
Sbjct: 308 DQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLN 367

Query: 452 EHVKYLHG----YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           E ++Y       Y+++ G+     +   + +S    G ++ A EL  +  +   D   W 
Sbjct: 368 EGLRYFESMKRDYNIEPGVEHYGCLVNLLGLS----GRLDQALELIKKMPM-KPDSAIWG 422

Query: 508 SMISAYAKHGD 518
           S++S+   H +
Sbjct: 423 SLLSSCRSHSN 433



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 160/381 (41%), Gaps = 47/381 (12%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D+F  I     +    NI   K++HA++++        +   ++D+     +   A  +F
Sbjct: 15  DIFVPI-----LKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLF 69

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-----KLEGVEVDFVTIINILPACVN 447
             V       +++MI+ Y  +   + A+ ++ +M         +  D  T   ++ +C  
Sbjct: 70  KRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAG 129

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE------------ 495
           +   +  K +HG+  K G  S + V  ++   Y KC  ++ A ++F+E            
Sbjct: 130 LMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTL 189

Query: 496 -----------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
                            E++  K I +W +++S YA+ G ++   + + +M+   + PD 
Sbjct: 190 ISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           I+ + +L AC   G +E G+ I     ++ G+  +     +++ +  + G +DE R L  
Sbjct: 250 ISLVSVLPACAQLGALELGKWIHFYADKA-GFLRNICVCNALIEMYAKCGSIDEGRRLFD 308

Query: 599 DMPFKPDARVWGPLLSACKMHSET-ELAELTAE-KLISMEPENAGNYVLLSNIYAAAGKW 656
            M  + D   W  ++     H    E  EL  E +   +EP N   +V L +  A AG  
Sbjct: 309 QMNER-DVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEP-NIITFVGLLSACAHAGLL 366

Query: 657 N-GVAKMRTFLRDRGLKKTPG 676
           N G+    +  RD  ++  PG
Sbjct: 367 NEGLRYFESMKRDYNIE--PG 385



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 5/243 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + LI  +  LG +  ++ +F  +       +  I+   ++ G Y   L  +++M +  + 
Sbjct: 187 NTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIE 246

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P E +   V+ +C+ L     G+ IH    K GF     V +AL+E Y KC    E  + 
Sbjct: 247 PDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRL 306

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
             Q   +D+ S W+++I     +G++ ++ ELF+ M+    E +  T + LL +      
Sbjct: 307 FDQMNERDVIS-WSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGL 365

Query: 249 LELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIM 305
           L  G + +  ++  D+  +  V     L+++      L+ A  L  KM  K D  +W  +
Sbjct: 366 LNEG-LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSL 424

Query: 306 ISA 308
           +S+
Sbjct: 425 LSS 427


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 209/696 (30%), Positives = 346/696 (49%), Gaps = 63/696 (9%)

Query: 68   SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL-SKFGEYEKTLLVYKQMALQS 126
            + NLI SY   G    +  VF      N L + + ++   S  G     L V+K++  + 
Sbjct: 610  AKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKG 669

Query: 127  MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
            +    + Y   +++C+ ++D   G +IH  ++K GFD    +  AL+ FY +C  G E  
Sbjct: 670  VVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRC-WGLEKA 728

Query: 187  KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
              +           WN  I L +Q+ K +K  ELF+ M+    + ++ T++ +L++  ++
Sbjct: 729  NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 788

Query: 247  KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--------- 297
             +L   + +H          D+S+   L+SMYSK   LE A+ +FD M ++         
Sbjct: 789  GALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMI 848

Query: 298  --------------------------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
                                      D V WN ++S ++  G+ +E L +L  M   GF+
Sbjct: 849  SSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK 908

Query: 332  ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
             +  +  + + +IS +  +  GK+ H  VLRNG D  V V  SLIDMY +   L  A+ +
Sbjct: 909  PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAV 968

Query: 392  FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT-------------- 437
            FD++K + + +W+S++ GY       +ALRL ++M+ EG++ D VT              
Sbjct: 969  FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCA 1028

Query: 438  ----------IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
                      I  +L AC ++  L+  K +H  S++ G      V TA+   Y+K   ++
Sbjct: 1029 RKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 1088

Query: 488  MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
             A ++F   +I +K + +WN MI  +A  G   +   ++ +M++  V PD ITF  LL+A
Sbjct: 1089 NAHKVF--RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSA 1146

Query: 548  CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
            C N+GL+ EG   F  M   Y   P  EHY  MV+LLGRAG++DEA +L+  MP KPDA 
Sbjct: 1147 CKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDAT 1206

Query: 608  VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
            +WG LL +C++H     AE  A+ L  +EP N+ NY+L+ N+Y+   +W  +  +R  + 
Sbjct: 1207 IWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMG 1266

Query: 668  DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
              G++     SWI+I + VH F + ++ HP A  IY
Sbjct: 1267 AAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIY 1302



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 217/473 (45%), Gaps = 72/473 (15%)

Query: 50   QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG-TILKNLSK 108
            +IH   +I  G   ++ L   L++ Y     L  + QVF+ + +P +LL+   I+ NL  
Sbjct: 695  EIHG-CLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQS 753

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
              + +K + ++++M    +     T   V+++C  +    + ++IH  V + G DS   +
Sbjct: 754  -EKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSL 812

Query: 169  GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---------------------------- 200
             + L+  Y K +G  E    + +R F  +++R                            
Sbjct: 813  CNPLISMYSK-NGKLE----LARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYEL 867

Query: 201  -----------WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
                       WN L+S    +G  E+   + + M+ EG + +S ++ ++L++  EL  L
Sbjct: 868  ESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFL 927

Query: 250  ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             +G+  H   + + F  D+ V T+L+ MY K  SL  A+ +FD M +++   WN ++S Y
Sbjct: 928  NMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGY 987

Query: 310  YQSGFPKESLELLMCMVRSGFRADLFTAIAAVS------------------------SIS 345
               G  +++L LL  M + G + DL T    +S                        + +
Sbjct: 988  SFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACA 1047

Query: 346  TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            ++  ++ GK++H   +RNG    V V  +LIDMY +   L  A K+F  ++ KT+ SW+ 
Sbjct: 1048 SLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNC 1107

Query: 406  MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYL 457
            MI G+       EA+ +F+EM+  GV  D +T   +L AC N G + E  KY 
Sbjct: 1108 MIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYF 1160


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 209/711 (29%), Positives = 379/711 (53%), Gaps = 12/711 (1%)

Query: 10  SLQSGHVKFLRFPANQTRPHMTA-THSF-SLLNLCENPQHLQ---QIHARYIILHGLHQN 64
           S Q  H + L   A+  + H+ +  ++F SLL  C +         +H R I++ GL  +
Sbjct: 45  SSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQR-ILVSGLSLD 103

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
             ++S+LI+ YA  G   ++++VF+ +   N + + +I+   S+ G   +   ++ +M  
Sbjct: 104 AYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRR 163

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           Q + P+  T   ++   S L      + +H   +  GF S  ++ ++++  Y KC     
Sbjct: 164 QGIQPSSVTMLSLLFGVSELAHV---QCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEY 220

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           + K       +DL S WNSL+S   Q G   +   L K MR++G E D  T  ++L    
Sbjct: 221 SRKLFDYMDQRDLVS-WNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAA 279

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
               L+LGR +H   + + F  D  V T+L+ MY K  +++ A  +F++  DKD V+W  
Sbjct: 280 SRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTA 339

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MIS   Q+G   ++L +   M++ G ++   T  + +++ + + +   G  +H  + R+ 
Sbjct: 340 MISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHE 399

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               ++  NSL+ M+ +C  L+ +  +FD +  + +VSW++MI GY  +    +AL LF+
Sbjct: 400 LPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFN 459

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EM+ +    D +TI+++L  C + G L   K++H + ++ GL     V+T++   Y KCG
Sbjct: 460 EMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCG 519

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +++A   F++  + S D+++W+++I  Y  HG      + Y++  +S ++P+ + FL +
Sbjct: 520 DLDIAQRCFNQ--MPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSV 577

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L++C + GLVE+G  I++ M   +G  P+ EH+A +V+LL RAG ++EA  L K     P
Sbjct: 578 LSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDP 637

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
              V G +L AC+ +   EL +  A  ++ ++P +AGN+V L++ YA+  KW  V +  T
Sbjct: 638 VLDVLGIILDACRANGNNELGDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWT 697

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            +R  GLKK PG S+I+I   +  F+    SHPQ   I   L  L  E+++
Sbjct: 698 HMRSLGLKKIPGWSFIDIHGTITTFFTDHNSHPQFQEIVCTLKFLRKEMIK 748



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/581 (27%), Positives = 289/581 (49%), Gaps = 22/581 (3%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQV 157
           +  I+ + S  G + + L  Y  M L++  P++  T+P ++++CS L  F  G  +H ++
Sbjct: 37  FNAIINHHSSQGAHRQVLATYASM-LKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRI 95

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQNG 212
           +  G      +  +L+ FY K   GF +    + RK  D         W S+I    + G
Sbjct: 96  LVSGLSLDAYIASSLINFYAKF--GFAD----VARKVFDFMPERNVVPWTSIIGCYSRTG 149

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           +  ++F LF  MR +G +  S T+++LL    EL  ++    +H  A++  F  D++++ 
Sbjct: 150 RVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQ---CLHGSAILYGFMSDINLSN 206

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           ++LSMY K  ++E ++ LFD M  +D V WN ++SAY Q G+  E L LL  M   GF  
Sbjct: 207 SMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEP 266

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T  + +S  ++   ++ G+ +H  +LR   D    V  SLI MY +  +++ A ++F
Sbjct: 267 DPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMF 326

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +    K VV W++MI G V +  + +AL +F +M   GV+    T+ +++ AC  +G+  
Sbjct: 327 ERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYN 386

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
               +HGY  +  L    +   ++   +AKCG ++ +  +FD  K++ +++++WN+MI+ 
Sbjct: 387 LGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFD--KMNKRNLVSWNAMITG 444

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA++G   +   L+ +M+     PD IT + LL  C + G +  G+ I   +  + G  P
Sbjct: 445 YAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRP 503

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
                 S+V++  + G +D A+     MP   D   W  ++     H + E A     K 
Sbjct: 504 CILVDTSLVDMYCKCGDLDIAQRCFNQMP-SHDLVSWSAIIVGYGYHGKGETALRFYSKF 562

Query: 633 I--SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           +   M+P +     +LS+         G+    +  RD G+
Sbjct: 563 LESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGI 603


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 213/666 (31%), Positives = 351/666 (52%), Gaps = 20/666 (3%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           +N+++ Y     L  +  +F+ +   +S+ + T++      G  E +  V + M      
Sbjct: 37  NNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFE 96

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
               T+  +++  +    F  G+++H+ ++K+G+      G AL++ Y KC+   E+   
Sbjct: 97  LDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEK-LEDAYL 155

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL-----RST 243
                 K     WN++I+   Q G  E +F L   M  EG + D GT   LL        
Sbjct: 156 SFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADF 215

Query: 244 VELKSLELGRIV-HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVV 301
             L S   G+I+ H + +V+  C       AL++ YSK  SL+DAK +FD  +  +D V 
Sbjct: 216 CNLTSQLHGKIIKHGLELVNTMC------NALITSYSKCGSLDDAKRIFDSSAGIRDLVT 269

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN +++AY        + +LL+ M   GF  DL++  + +S+         G+ +H  V+
Sbjct: 270 WNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVI 329

Query: 362 RNGSDYQVSVHNSLIDMYCECE--DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           + G +  V + N+LI MY + +   +  A  IF+S++ K  VSW+S++ G      S +A
Sbjct: 330 KRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDA 389

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           ++ F  M+   +++D  +   +L +C ++   +  + +H  ++K GL S   V++++   
Sbjct: 390 VKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFM 449

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG IE A   F+E   +S   ITWN+++  YA+HG  +    L+  M++  V+ D I
Sbjct: 450 YSKCGIIEDARRSFEEASKNSS--ITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHI 507

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TF+ +LTAC + GLVE+G    + M+  YG  P  EHYA  V+L GR+G ++EA+ L+++
Sbjct: 508 TFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEE 567

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPFKPD  VW   L AC+     ELA   A  L+ MEPE    YVLLSN+Y    +W+  
Sbjct: 568 MPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEK 627

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
           AK++  +++RG+KK PG SWIE+   VH F A D SHP    IY +L +L  EI   R E
Sbjct: 628 AKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLEEIT--RME 685

Query: 720 SSEELK 725
            ++  K
Sbjct: 686 DADGFK 691



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H +AV      D+     +L+ Y K   L  A +LFD+M  +D V WN MI+ +   G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           + S ++L CM   GF  D +T  + +  I+       G+Q+H+ +++ G    V   ++L
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           +DMY +CE L  A   F S+     VSW++MI GY        A  L   M+ EG +VD 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   +LP   +         LHG  +K GL  ++++  A+  SY+KCG ++ A  +FD 
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
                +D++TWNS+++AY         FKL   M++    PDL ++  +++AC N  +  
Sbjct: 261 SA-GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISN 319

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRA--GHMDEARELVKDMPFKPDARVWGPLL 613
            GR +   + +  G+E S     +++++  ++  G M EA  + + + FK D   W  +L
Sbjct: 320 NGRSLHGLVIKR-GFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFK-DRVSWNSIL 377

Query: 614 SACKMHSETELA 625
           +       +E A
Sbjct: 378 TGLSQTGSSEDA 389



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 231/479 (48%), Gaps = 17/479 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+H+  II  G  +N+   S L+D YA    L  +   F SI+  N++ +  ++   ++
Sbjct: 119 QQVHS-IIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTY----PFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            G+ E    +   M  +     + TY    P +  +  C L      ++H +++K G + 
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLT----SQLHGKIIKHGLEL 233

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRK--FKDLKSRWNSLISLAVQNGKSEKSFELFK 222
            + + +AL+  Y KC G  ++ K +       +DL + WNSL++  +   + + +F+L  
Sbjct: 234 VNTMCNALITSYSKC-GSLDDAKRIFDSSAGIRDLVT-WNSLLAAYLLRSQEDLAFKLLI 291

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY--SK 280
            M+  G E D  +  +++ +         GR +H + +   F + + ++ AL+SMY  S 
Sbjct: 292 DMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSD 351

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             S+++A  +F+ +  KDRV WN +++   Q+G  +++++  + M  +    D ++  A 
Sbjct: 352 YGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAV 411

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + S S +   + G+Q+H   L+ G +    V +SLI MY +C  +  AR+ F+     + 
Sbjct: 412 LRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS 471

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHG 459
           ++W++++ GY  H Q   AL LF  M+ + V++D +T + +L AC +IG +E   K+L  
Sbjct: 472 ITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRC 531

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                G+             Y + G +E A  L +E      D   W + + A    G+
Sbjct: 532 MESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPF-KPDTTVWKTFLGACRSCGN 589



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL ++   H  ++KLG  +       I   Y KC  +  A  LFDE  +  +D ++WN+M
Sbjct: 13  ALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPM--RDSVSWNTM 70

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           I+ +   G+    + +   M+      D  TF  +L     AG+   G+ +
Sbjct: 71  IAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQV 121


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 190/532 (35%), Positives = 296/532 (55%), Gaps = 20/532 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W+S+I     +     SF  F  MR      +     +LL+++  LK  +L   +H   V
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 261 VSDFCKDLSVNTALLSMYSKL---------------ASLEDAKMLFDKMSDKDRVVWNIM 305
                 DL +  AL++ Y+K                + ++  K +FD M  +D V WN +
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 306 ISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           I+ + Q+G   E+L+++  M ++G  + D FT  + +   +   ++  GK++H   +RNG
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNG 257

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            D  V + +SLIDMY +C  L C+ + F  +  K  +SW+S+I G V + +    L  F 
Sbjct: 258 FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR 317

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M  E V+   V+  +++PAC ++ AL   + LHG  ++LG +    + +++   YAKCG
Sbjct: 318 RMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCG 377

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            I+MA  +FD  +ID +D++ W ++I   A HG       L+  M +  VRP  + F+ +
Sbjct: 378 NIKMARYVFD--RIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAV 435

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FK 603
           LTAC +AGLV+EG   F  M+  +G  P  EHYA++ +LLGRAG ++EA + + +M   +
Sbjct: 436 LTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQ 495

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           P   VW  LL+AC+ H   ELAE   +KL+S++ EN G YVL+SNIY+AA +W   A++R
Sbjct: 496 PTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLR 555

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
             +R +GLKKTP CSWIE+G  VH F A D+SHP  D I   L +L LE ME
Sbjct: 556 IHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVL-LEQME 606



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 214/467 (45%), Gaps = 50/467 (10%)

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           +  M   S+ P    +P ++++ + L        +HA  V+LG DS   + +AL+  Y K
Sbjct: 98  FNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAK 157

Query: 179 CDGGFE--------NEKGM--IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
                +         E G+  +++ F  +  R    WN++I+   QNG   ++ ++ + M
Sbjct: 158 FHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREM 217

Query: 225 RMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
              G  + DS TL ++L    E   +  G+ +H  AV + F  D+ + ++L+ MY+K   
Sbjct: 218 GKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNR 277

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LE +   F  +  KD + WN +I+   Q+G     L     M++   +    +  + + +
Sbjct: 278 LECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPA 337

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +  +  G+Q+H  ++R G D    + +SL+DMY +C ++  AR +FD +  + +V+W
Sbjct: 338 CAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAW 397

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG-------------- 449
           +++I G   H  +L+A+ LF  M  +GV   +V  + +L AC + G              
Sbjct: 398 TAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMER 457

Query: 450 ------ALEH---VKYLHGYSMKL-----------GLNSLSSVNTAIFISYAKCGCIEMA 489
                  LEH   V  L G + +L           G+    SV + +  +      +E+A
Sbjct: 458 DFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELA 517

Query: 490 GELFDE-EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
            ++ D+   +DS+++  +  M + Y+    W    +L   M++  ++
Sbjct: 518 EKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLK 564



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 93/182 (51%), Gaps = 2/182 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y + +G   ++ + S+LID YA    L  S + F  +   +++ + +I+    +
Sbjct: 247 KEIHG-YAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQ 305

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE+++ L  +++M  +++ P   ++  VI +C+ L     G ++H  +V+LGFD  + +
Sbjct: 306 NGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFI 365

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +LV+ Y KC G  +  + +  R  K     W ++I     +G +  +  LF+ M  +G
Sbjct: 366 ASSLVDMYAKC-GNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDG 424

Query: 229 AE 230
             
Sbjct: 425 VR 426


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 210/696 (30%), Positives = 376/696 (54%), Gaps = 27/696 (3%)

Query: 33  THSF-SLLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +H++ ++L  C    +P   + IH   I+  G   +L  ++ L+++Y   G    +  +F
Sbjct: 49  SHAYGAMLRRCIQKNDPISAKAIHCD-ILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + +   N++ + T+ +  +     +  + +Y ++  +      +  P V  S   L  F+
Sbjct: 108 DEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHRE----GHELNPHVFTSFLKL--FV 157

Query: 149 SGEK------IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWN 202
           S +K      +H+ +VKLG+DS   VG AL+  Y  C G  ++ + + +         W 
Sbjct: 158 SLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVC-GSVDSARTVFEGILCKDIVVWA 216

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
            ++S  V+NG  E S +L   MRM G   ++ T    L++++ L + +  + VH   + +
Sbjct: 217 GIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKT 276

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            +  D  V   LL +Y++L  + DA  +F++M   D V W+ MI+ + Q+GF  E+++L 
Sbjct: 277 CYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLF 336

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
           + M  +    + FT  + ++  +  K    G+Q+H  V++ G D  + V N+LID+Y +C
Sbjct: 337 IRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKC 396

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           E ++ A K+F  + +K  VSW+++I GY    +  +A  +F E     V V  VT  + L
Sbjct: 397 EKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSAL 456

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC ++ +++    +HG ++K       +V+ ++   YAKCG I+ A  +F+E  +++ D
Sbjct: 457 GACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNE--METID 514

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           + +WN++IS Y+ HG   Q  ++   MK  D +P+ +TFLG+L+ C NAGL+++G+  F+
Sbjct: 515 VASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFE 574

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M   +G EP  EHY  MV LLGR+G +D+A +L++ +P++P   +W  +LSA    +  
Sbjct: 575 SMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNE 634

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           E A  +AE+++ + P++   YVL+SN+YA A +W  VA +R  +++ G+KK PG SWIE 
Sbjct: 635 EFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEH 694

Query: 683 GKLVHEFWAADQSHPQADAIYTILGILELEIMEGRR 718
              VH F      HP    +  I G+LE   M+  R
Sbjct: 695 QGDVHYFSVGLSDHPD---MKLINGMLEWLNMKATR 727



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 147/318 (46%), Gaps = 6/318 (1%)

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            DS     +LR  ++       + +HC  +    C DL     LL+ Y K    +DA  L
Sbjct: 47  LDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           FD+M +++ V +  +   Y      ++ + L   + R G   +     + +    ++   
Sbjct: 107 FDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKA 162

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           E    +H+ +++ G D    V  +LI+ Y  C  ++ AR +F+ +  K +V W+ ++  Y
Sbjct: 163 EICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCY 222

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
           V +    ++L+L S M++ G   +  T    L A + +GA +  K +HG  +K       
Sbjct: 223 VENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP 282

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            V   +   Y + G +  A ++F+E  +   D++ W+ MI+ + ++G  ++   L+ +M+
Sbjct: 283 RVGVGLLQLYTQLGDMSDAFKVFNE--MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMR 340

Query: 531 QSDVRPDLITFLGLLTAC 548
           ++ V P+  T   +L  C
Sbjct: 341 EAFVVPNEFTLSSILNGC 358


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 211/684 (30%), Positives = 346/684 (50%), Gaps = 75/684 (10%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSL--SQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           ++L G  +    +S LI    +   + +  ++++FN I + N  ++  +++   +     
Sbjct: 1   MLLTGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH 60

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
               +YK M    +     TYP +I++CS        +++H  V+KLGFDS   V + L+
Sbjct: 61  FAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLI 120

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
             +  C    +  +   +    D  S WNS+++  ++ G  E++  ++  M  E +   S
Sbjct: 121 NCFSVCSNMTDACRVFNESSVLDSVS-WNSILAGYIEIGNVEEAKHIYHQMP-ERSIIAS 178

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            ++I L                    +V + CK                       LFD+
Sbjct: 179 NSMIVLFGMR---------------GLVVEACK-----------------------LFDE 200

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M +KD V W+ +I+ + Q+   +E++   + M + G   D   A++A+S+ + +  +  G
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMG 260

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK----------------------- 390
           K +H+  L+ G++  +++ N+LI MY +C D+  ARK                       
Sbjct: 261 KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKC 320

Query: 391 --------IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
                   IFDS+  K VVSWSSMI GY  +D   E L LF EM++ G + D  T+++++
Sbjct: 321 NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVI 380

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  + ALE  K++H Y  + GL     + T +   Y KCGC+E A E+F    +  K 
Sbjct: 381 SACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVF--YGMIEKG 438

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I TWN++I   A +G       +++ MK+  V P+ ITF+G+L AC + GLV+EG+  F 
Sbjct: 439 ISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFY 498

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M   +  +P+ +HY  MV+LLGRAG + EA EL+  MP  PD   WG LL ACK H ++
Sbjct: 499 SMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 558

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           E+      KLI ++P++ G +VLLSNIYA+ GKW+ V ++R  +    + K PGCS IE 
Sbjct: 559 EMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEA 618

Query: 683 GKLVHEFWAADQSHPQADAIYTIL 706
             ++HEF A D++HP  DAI  +L
Sbjct: 619 NGVIHEFLAGDKTHPDMDAIEDML 642



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 173/397 (43%), Gaps = 34/397 (8%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           A++I      +++I S+++I  +   GL+  + ++F+ +   + + +  ++    +   Y
Sbjct: 163 AKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMY 222

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           E+ +  +  M    +   E      + +C+ LL    G+ IH+  +K+G +S+ ++ +AL
Sbjct: 223 EEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNAL 282

Query: 173 VEFYIKCD------------------------GGF------ENEKGMIQRKFKDLKSRWN 202
           +  Y KC                          G+      +N K +     +     W+
Sbjct: 283 IYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWS 342

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           S+IS   QN   +++  LF+ M+M G + D  TL++++ +   L +LE G+ VH     +
Sbjct: 343 SMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN 402

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               ++ + T L+ MY K   +E A  +F  M +K    WN +I     +G  + SL++ 
Sbjct: 403 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 462

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYC 380
             M +     +  T +  + +   M  ++ G Q H   + +    Q +V  +  ++D+  
Sbjct: 463 SNMKKCHVTPNEITFMGVLGACRHMGLVDEG-QHHFYSMIHDHKIQPNVKHYGCMVDLLG 521

Query: 381 ECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQS 416
               L  A ++ + +  T  V +W +++     H  S
Sbjct: 522 RAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 558



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+++ C     L+Q   +HA YI  +GL  N+IL + LID Y   G +  + +VF  +  
Sbjct: 378 SVISACARLAALEQGKWVHA-YIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 436

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
                +  ++  L+  G  E +L ++  M    + P E T+  V+ +C
Sbjct: 437 KGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 484


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 204/666 (30%), Positives = 355/666 (53%), Gaps = 11/666 (1%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C NP  L +   +HA YI   GL Q +++ + LI  Y+  G L+ ++QVF+++ S
Sbjct: 307 SILGACTNPNDLGEGLKLHA-YIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRS 365

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N   +  ++    + G  E+   +++ M  +   P + TY  ++  C+   D   G+++
Sbjct: 366 LNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKEL 424

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H+Q+   G+ +   V  AL+  Y KC    E  K   Q   +++ S WN+ IS   ++  
Sbjct: 425 HSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVIS-WNAFISCCCRHDL 483

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            +++F+ FK MR +    D  T I LL S    + LE GR +H          +  V  A
Sbjct: 484 GKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANA 543

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+SMY +  +L DA+ +F ++  +D   WN MI+A  Q G    + +L       G + D
Sbjct: 544 LISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGD 603

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            +T I  + +++ +++++ G+ +H  V + G    + V  +LI MY +C  L  A  +F 
Sbjct: 604 KYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFS 663

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           +V+ K VV W++M+  Y   D+  +AL+LF +M+LEGV  D  T    L AC  + A+EH
Sbjct: 664 TVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEH 723

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H    + G+ + + V+ ++   Y++CGC+  A ++F  EK+ S+DI +WN++I+ Y
Sbjct: 724 GKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVF--EKMLSRDINSWNALIAGY 781

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
            ++G  +   + Y  M ++ + P+  TF  +L++    G  E+     + +K+ +  EPS
Sbjct: 782 CQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKEWNMEPS 841

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
           ++HYA MV  LGRAG + EA E ++++  +  A +W  LL AC++H   ELAE   E L+
Sbjct: 842 EQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWESLLVACRIHLNVELAETAVEHLL 901

Query: 634 SMEPENAGNYV-LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             + + +      L +IYAAAG+W  V+ ++T +++ GL     C+ IE+    H F  A
Sbjct: 902 DAKAQASPAVCEQLMSIYAAAGRWEDVSVLKTTMQEAGLVALKSCT-IEVNSEFHNF-IA 959

Query: 693 DQSHPQ 698
           +   PQ
Sbjct: 960 NHLSPQ 965



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 178/626 (28%), Positives = 320/626 (51%), Gaps = 15/626 (2%)

Query: 36  FSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S+L+ C++P  L+   QIH+R I   G   ++ +S+ LI+ Y   G L L+++VFN + 
Sbjct: 205 ISILSACQSPIALEFGEQIHSR-IAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMR 263

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + +  ++    + G+  + L +++++    + P + ++  ++ +C+   D   G K
Sbjct: 264 ERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLK 323

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +HA + + G +    VG+AL+  Y +C G   N + +        ++ WN++I+     G
Sbjct: 324 LHAYIKQAGLEQEVLVGNALISMYSRC-GSLANARQVFDNLRSLNRTTWNAMIA-GYGEG 381

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             E++F LF+ M  +G + D  T  +LL    +   L+ G+ +H     + +  DL+V T
Sbjct: 382 LMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVAT 441

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+SMY+K  S E+A+ +F++M +++ + WN  IS   +    KE+ +    M R     
Sbjct: 442 ALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNP 501

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T I  ++S ++ +++E G+ +H  + + G      V N+LI MY  C +L  AR++F
Sbjct: 502 DHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVF 561

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             ++ + + SW++MI   V H  +  A  LF + + EG + D  T IN+L A  N+  L+
Sbjct: 562 YRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLD 621

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +HG   K G      V T +   Y+KCG +  A  +F    +  KD++ WN+M++A
Sbjct: 622 AGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFS--TVQEKDVVCWNAMLAA 679

Query: 513 YAKHGDWSQ-CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           YA H D  Q   KL+ QM+   V PD  T+   L AC     VE G+ I  ++KE+ G E
Sbjct: 680 YA-HSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEA-GME 737

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                  S++ +  R G +  A+++ + M    D   W  L++    + +  +A    E 
Sbjct: 738 TDTRVSNSLIEMYSRCGCLCSAKQVFEKM-LSRDINSWNALIAGYCQNGQGNIALEYYEL 796

Query: 632 LI--SMEPENAGNYVLLSNIYAAAGK 655
           ++  S+ P  A    +LS+ YA  G+
Sbjct: 797 MLRASIVPNKATFTSILSS-YAQLGE 821



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/556 (26%), Positives = 286/556 (51%), Gaps = 14/556 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           ++ L++ LI  Y+  G +  +  VF ++   + + +  ++   +  G  ++   ++ QM 
Sbjct: 134 DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQ 193

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            + + P ++T+  ++ +C   +    GE+IH+++ K G++S  +V  AL+  Y KC G  
Sbjct: 194 REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKC-GSL 252

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           E    + ++ F +++ R    W ++IS  VQ+G S ++  LF+ +   G + +  +  ++
Sbjct: 253 E----LARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASI 308

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L +      L  G  +H     +   +++ V  AL+SMYS+  SL +A+ +FD +   +R
Sbjct: 309 LGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNR 368

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
             WN MI+ Y + G  +E+  L   M + GF+ D FT  + ++  +   +++ GK++H+ 
Sbjct: 369 TTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQ 427

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           +   G    ++V  +LI MY +C     ARK+F+ +  + V+SW++ I     HD   EA
Sbjct: 428 IASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEA 487

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            + F +M+ + V  D +T I +L +C +   LE  +Y+HG   + G+ S + V  A+   
Sbjct: 488 FQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALISM 547

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y +CG +  A E+F   +I  +D+ +WN+MI+A  +HG     F L+ + +    + D  
Sbjct: 548 YGRCGNLADAREVF--YRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKY 605

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TF+ +L A  N   ++ GR+I   + E  G+        +++ +  + G + +A  +   
Sbjct: 606 TFINVLRAVANLEDLDAGRMIHG-LVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFST 664

Query: 600 MPFKPDARVWGPLLSA 615
           +  K D   W  +L+A
Sbjct: 665 VQEK-DVVCWNAMLAA 679



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 264/487 (54%), Gaps = 8/487 (1%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR- 192
           Y   ++ C        G+K+H  +    F     + + L+  Y KC G  E+   + Q  
Sbjct: 103 YARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKC-GSIEDANNVFQAM 161

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + KD+ S WN++IS    +G+ +++ +LF  M+ EG + +  T I++L +     +LE G
Sbjct: 162 EDKDVVS-WNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFG 220

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H     + +  D++V+TAL++MY K  SLE A+ +F++M +++ V W  MIS Y Q 
Sbjct: 221 EQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQH 280

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G  +E+L L   ++RSG + +  +  + + + +   ++  G ++HA + + G + +V V 
Sbjct: 281 GDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVG 340

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N+LI MY  C  L  AR++FD++++    +W++MI GY       EA RLF  M+ +G +
Sbjct: 341 NALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGY-GEGLMEEAFRLFRAMEQKGFQ 399

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D  T  ++L  C +   L+  K LH      G  +  +V TA+   YAKCG  E A ++
Sbjct: 400 PDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKV 459

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F++  +  +++I+WN+ IS   +H    + F+ + QM++ DV PD ITF+ LL +C +  
Sbjct: 460 FNQ--MPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPE 517

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            +E GR I  ++ + +G   +     +++++ GR G++ +ARE+   +  + D   W  +
Sbjct: 518 DLERGRYIHGKINQ-WGMLSNNHVANALISMYGRCGNLADAREVFYRIR-RRDLGSWNAM 575

Query: 613 LSACKMH 619
           ++A   H
Sbjct: 576 IAANVQH 582



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 137/431 (31%), Positives = 230/431 (53%), Gaps = 9/431 (2%)

Query: 191 QRKFKDLKSRWNS--LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           +R+ ++  + W+    I    + GKS K     +L+   G + +       L+  V  KS
Sbjct: 58  ERRIRESNNTWDEGPKIVRDTREGKSIKG--AVQLLGKRGVQANLNFYARRLQQCVLAKS 115

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L  G+ VH     + F  D+ +N  L+SMYSK  S+EDA  +F  M DKD V WN MIS 
Sbjct: 116 LAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISG 175

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y   G  +E+ +L   M R G + +  T I+ +S+  +   +E+G+Q+H+ + + G +  
Sbjct: 176 YALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESD 235

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           V+V  +LI+MYC+C  L  ARK+F+ ++ + VVSW++MI GYV H  S EAL LF ++  
Sbjct: 236 VNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIR 295

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G++ + V+  +IL AC N   L     LH Y  + GL     V  A+   Y++CG +  
Sbjct: 296 SGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLAN 355

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A ++FD   + S +  TWN+MI+ Y + G   + F+L+  M+Q   +PD  T+  LL  C
Sbjct: 356 ARQVFD--NLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAIC 412

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +   ++ G+ +  ++  S G++       +++++  + G  +EAR++   MP + +   
Sbjct: 413 ADRADLDRGKELHSQIA-STGWQTDLTVATALISMYAKCGSPEEARKVFNQMP-ERNVIS 470

Query: 609 WGPLLSACKMH 619
           W   +S C  H
Sbjct: 471 WNAFISCCCRH 481


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 233/759 (30%), Positives = 379/759 (49%), Gaps = 87/759 (11%)

Query: 18  FLRFPA-NQTRPHMTATHSFSLLNLCE-NPQHLQQIHARYIILHGLHQNLILSSNLIDSY 75
            LRFP  N   P +  TH+  L +    + Q  + +    +    LHQ  I++ +L++SY
Sbjct: 2   LLRFPLFNSKPPLLINTHNLLLYHSSTISKQQCKTLTQAKL----LHQQYIINGHLLNSY 57

Query: 76  ANLGLLSLSQQVFNSITSPNSLL-------------YGTILKNLSKFGEYEKTLLVYKQM 122
            N+  L  +    NSIT+   LL             +  ++++   F      L ++++M
Sbjct: 58  TNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRM 117

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                 P   T+PFV ++C  + +F  G  IH  V++LGF+S   V +A++  Y KC   
Sbjct: 118 KTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAV 177

Query: 183 FENEKGMIQRKFKDL--KSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINL 239
               K   +  ++ +     WNS++S+         +  LF+ M +  G   D+  ++N+
Sbjct: 178 VHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNI 237

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L     L     GR VH   V S   +D+ V  AL+ MY+K   +EDA  +F++M  KD 
Sbjct: 238 LPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDV 297

Query: 300 VVWNIM-----------------------------------ISAYYQSGFPKESLELLMC 324
           V WN M                                   IS Y Q GF  E++++   
Sbjct: 298 VTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQ 357

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-------NGSDYQVSVHNSLID 377
           M     R ++ T ++ +S+ +++  +  GK+ H   ++       N     ++V N+LID
Sbjct: 358 MCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALID 417

Query: 378 MYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEV- 433
           MY +C+ L  AR +FD +  K + VV+W+ MI GY  H  +  AL+LFSEM K++   V 
Sbjct: 418 MYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVP 477

Query: 434 -DFVTIINILPACVNIGALEHVKYLHGYSMKLGL--NSLSSVNTAIFISYAKCGCIEMAG 490
            DF TI  +L AC  + AL+  K +H Y ++     + +  V   +   Y+K G ++ A 
Sbjct: 478 NDF-TISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQ 536

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +FD   +  ++ ++W S+++ Y  HG     F+++ +M++  +  D ITFL +L AC +
Sbjct: 537 VVFDS--MSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSH 594

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           +G+              +G +P  EHYA MV+LLGRAG + EA  L+ DMP +P   VW 
Sbjct: 595 SGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWI 641

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLSAC++HS  ELAE  A+KL+ ++ +N G Y LLSNIYA A +W  VA++   ++  G
Sbjct: 642 ALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTG 701

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +KK PG SW++  K +  F+  D++H Q+  IY  L  L
Sbjct: 702 IKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADL 740


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 209/590 (35%), Positives = 304/590 (51%), Gaps = 80/590 (13%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE--LGRIVHCV 258
           +N++I+    NG    + ELF+ MR +    D  T  ++L + V     E   G++ HC 
Sbjct: 115 YNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM-HCA 173

Query: 259 AVVSDF-CKDLSVNTALLSMYSKLAS--------LEDAKMLFDKMSDKDRVVW------- 302
            V +   C   SV  ALLS+Y K AS        +  A+ LFD+M  +D + W       
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 303 ------------------------NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
                                   N MIS Y   G  +E+L L   M   G + D  T  
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 339 AAVSSISTMKNIEWGKQMHANVLRN----GSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
             +S+ + + + + GKQMHA +L+N       + +SV N+LI +YC+   ++ ARKIF +
Sbjct: 294 TIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYA 353

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEA-------------------------------LRLF 423
           +  + +++W++++ GYV   +  EA                               L+LF
Sbjct: 354 MPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLF 413

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+L+G E         L AC  +GALE+ + LH   + LG  S  SV  A+   YAKC
Sbjct: 414 KQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKC 473

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +E A  +F    + S D+++WNSMI+A  +HG   +  +L+ QM +  V PD ITFL 
Sbjct: 474 GVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +LTAC +AGLVE+GR  F  M ESYG  P ++HYA MV+L  RAG    AR ++  MP K
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           P A VW  LL+ C++H   +L    AE+L  + P+N G YVLLSNIYA  G+WN VAK+R
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVR 651

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             +RD+ ++K P CSWIE+   VH F   D  HP+  ++Y  L  L LE+
Sbjct: 652 KLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEM 701



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 133/566 (23%), Positives = 244/566 (43%), Gaps = 92/566 (16%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS--ITSPNSLLYGTILKNLSK 108
           ++AR +     + + I  + LI +Y  LG L L +++FN   +   +S+ Y  ++   + 
Sbjct: 65  VYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAH 124

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE----KIHAQVVKLGFDS 164
            G+    L +++ M      P + T+  V+   S L+ F+  E    ++H  VVK G   
Sbjct: 125 NGDGHSALELFRAMRRDDFRPDDFTFTSVL---SALVLFVGNEQQCGQMHCAVVKTGMGC 181

Query: 165 F-DDVGDALVEFYIK--------CD-------------------------GGFENE---- 186
               V +AL+  Y+K        C                          G   N+    
Sbjct: 182 VSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNG 241

Query: 187 -KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            + + +   ++L + WN++IS  V  G  +++  L + MR  G +FD  T   ++ +   
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 246 LKSLELGRIVH--------------CVAV----VSDFCKDLSVN---------------- 271
           + S ++G+ +H              C++V    ++ +CK+  V+                
Sbjct: 302 VGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIIT 361

Query: 272 -TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             A+LS Y     +E+AK  F++M  K+ +   +MIS   Q+GF  E L+L   M   GF
Sbjct: 362 WNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
               F    A+++ S +  +E G+Q+HA ++  G +  +SV N++I MY +C  +  A  
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F ++ +  +VSW+SMI     H   ++A+ LF +M  EGV  D +T + +L AC + G 
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGL 541

Query: 451 LEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +E  + Y +      G+         +   + + G    A  + D           W ++
Sbjct: 542 VEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMP-SKPGAPVWEAL 600

Query: 510 ISAYAKHGDWS-------QCFKLYTQ 528
           ++    HG+         Q FKL  Q
Sbjct: 601 LAGCRIHGNMDLGIEAAEQLFKLMPQ 626



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 189/431 (43%), Gaps = 82/431 (19%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFD--KMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
           D    T L++ Y  L +LE  + +F+   +  +D V +N MI+ Y  +G    +LEL   
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 325 MVRSGFRADLFTAIAAVSSIST-MKNIEWGKQMHANVLRNGSD-YQVSVHNSLIDMYCE- 381
           M R  FR D FT  + +S++   + N +   QMH  V++ G      SV N+L+ +Y + 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 382 -------C-------------------------------EDLNCARKIFDSVKTKTVVSW 403
                  C                               +DLN AR++F+++      +W
Sbjct: 198 ASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++MI GYV      EAL L  +M+  G++ D +T   I+ AC N+G+ +  K +H Y +K
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK 317

Query: 464 LGLNS----LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY------ 513
             LN       SV+ A+   Y K   ++ A ++F    +  ++IITWN+++S Y      
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPV--RNIITWNAILSGYVNAGRM 375

Query: 514 -------------------------AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
                                    A++G   +  KL+ QM+     P    F G LTAC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
              G +E GR +  ++    GYE S     +M+++  + G ++ A  +   MP   D   
Sbjct: 436 SVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVS 493

Query: 609 WGPLLSACKMH 619
           W  +++A   H
Sbjct: 494 WNSMIAALGQH 504



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           S+L   EN +   Q+HA+ + L G   +L + + +I  YA  G++  ++ VF ++ S + 
Sbjct: 436 SVLGALENGR---QLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL 491

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + + +++  L + G   K + ++ QM  + ++P   T+  V+ +CS           HA 
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS-----------HAG 540

Query: 157 VVKLGFDSFDDV 168
           +V+ G   F+ +
Sbjct: 541 LVEKGRHYFNSM 552


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  344 bits (883), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 217/702 (30%), Positives = 355/702 (50%), Gaps = 54/702 (7%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           HLQ I       +G   NL LS+ LI+ Y  +G L  +Q++F+ +++ N + +  ++   
Sbjct: 122 HLQSIK------YGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC------SCLLDFISGEKIHAQVVKL 160
           ++ G+ ++    ++ M      P    +   +R+C       C L    G +IH  + K 
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKL----GVQIHGLISKT 231

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
            + S   V + L+  Y  C     + + +           WNS+IS+  + G +  +++L
Sbjct: 232 RYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDL 291

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYS 279
           F  M+ EG  F           +V  +    GR VH   + +    + +++   L++MY+
Sbjct: 292 FSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYA 351

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL----------------- 322
           K  ++ DA  +F+ M +KD V WN +IS   Q+   +++ E+                  
Sbjct: 352 KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGA 411

Query: 323 ---------------MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
                          + M+R G+     T I  +S++S++   E   Q+HA VL+     
Sbjct: 412 LSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSD 471

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             ++ N+L+  Y +C ++N   KIF  + +T+  VSW+SMI GY+ ++   +A+ L   M
Sbjct: 472 DTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFM 531

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
             +G  +D  T   IL AC ++  LE    +H   ++  L S   V +A+   Y+KCG I
Sbjct: 532 MQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRI 591

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           + A   F  E +  +++ +WNSMIS YA+HG   +  KL+T+M      PD +TF+G+L+
Sbjct: 592 DYASRFF--ELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLS 649

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC + G VEEG   FK M E Y   P  EH++ MV+LLGRAG +DE  + +  MP KP+ 
Sbjct: 650 ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNV 709

Query: 607 RVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
            +W  +L AC   +   TEL    AE L+ +EP+NA NYVLL+N+YA+  KW  VAK RT
Sbjct: 710 LIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKART 769

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            +++  +KK  GCSW+ +   VH F A D+ HP+ D IY  L
Sbjct: 770 AMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKL 811


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/547 (35%), Positives = 301/547 (55%), Gaps = 40/547 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I+   Q+ + E++ + F  M  +    +  +  + L +   LK L+LG  +H +  
Sbjct: 124 WNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLIS 183

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S +  D+ + + L+  YSK   +  A+ +FD M +K+ V WN +I+ Y Q+G   E+LE
Sbjct: 184 KSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALE 243

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMY 379
               M   GF+ D  T  + VS+ +T+   + G Q+HA V+++      + + N+L+DMY
Sbjct: 244 AFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMY 303

Query: 380 CECEDLNCARKIFD-------------------------------SVKTKTVVSWSSMIK 408
            +C  +N AR +FD                               ++K K +VSW+++I 
Sbjct: 304 AKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIA 363

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY  + ++ EAL LF  +K E V     T  N+L A  N+  LE  +  H + +K G   
Sbjct: 364 GYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRF 423

Query: 469 LSSVNTAIFIS------YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            S     IF+       Y KCG +E    +F  E +  KD ++WN+MI  YA++G   + 
Sbjct: 424 QSGEEPDIFVGNSLIDMYMKCGSVEEGLRVF--ENMVEKDHVSWNTMIIGYAQNGYGMEA 481

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +L+ +M +S  +PD +T +G L AC +AGLVEEGR  F  M + +G  P ++HY  MV+
Sbjct: 482 LELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVD 541

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG ++EA++L++ MP +PDA VW  LLSACK+H    L +  AEK+  ++P ++G 
Sbjct: 542 LLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGP 601

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           YVLL+N+Y+  G+W     +R  +R RG+ K PGCSWI+I   VH F   D+ HPQ   I
Sbjct: 602 YVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEI 661

Query: 703 YTILGIL 709
           Y+IL +L
Sbjct: 662 YSILKLL 668



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/556 (25%), Positives = 255/556 (45%), Gaps = 84/556 (15%)

Query: 38  LLNLC---ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL+LC    + +  + +H R +I     + + + + LID Y   G L  +++VF+ ++  
Sbjct: 30  LLDLCVKLRSSRDARSVHGR-LIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSER 88

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYK------QMALQSMYPA-------EDTYPFVIR-- 139
           N   + +I+  L ++G  +++  ++       Q +  SM          E+   + +R  
Sbjct: 89  NVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMH 148

Query: 140 ----------------SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
                           +CS L D   G +IH  + K  +     +G  L++FY KC    
Sbjct: 149 RDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKC---- 204

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
               G  +R F  ++ +    WN LI+   QNG + ++ E F  M   G + D  TL ++
Sbjct: 205 -GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASV 263

Query: 240 LRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSKLASLEDAKMLFDKM---- 294
           + +   L + + G  +H   V SD F  DL +  AL+ MY+K   + +A+ +FD+M    
Sbjct: 264 VSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRN 323

Query: 295 ---------------------------SDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
                                        KD V WN +I+ Y Q+G  +E+L L   + R
Sbjct: 324 AVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKR 383

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ------VSVHNSLIDMYCE 381
                  +T    +++ + + ++E G+Q H++V+++G  +Q      + V NSLIDMY +
Sbjct: 384 ESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMK 443

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C  +    ++F+++  K  VSW++MI GY  +   +EAL LF +M   G + D VT+I  
Sbjct: 444 CGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGT 503

Query: 442 LPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           L AC + G +E   +Y    + + GL  +    T +     + GC+E A +L  E     
Sbjct: 504 LCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLI-ESMPKQ 562

Query: 501 KDIITWNSMISAYAKH 516
            D + W+S++SA   H
Sbjct: 563 PDAVVWSSLLSACKVH 578



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 204/449 (45%), Gaps = 69/449 (15%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           DS     LL   V+L+S    R VH   + + FC+++ +   L+ +Y K   L+ A+ +F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 292 DKMSD-------------------------------KDRVVWNIMISAYYQSGFPKESLE 320
           D+MS+                               KD+  WN MI+ + Q    +E+L+
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
             + M R  F  + ++  + +S+ S +K+++ G Q+H  + ++     V + + LID Y 
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  + CAR++FD ++ K VVSW+ +I  Y  +  ++EAL  F  M   G + D VT+ +
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 441 ILPACVNIGALEHVKYLHGYSMKLG--LNSLSSVNTAIFISYAKCGCIEMAGELFDE--- 495
           ++ AC  + A +    +H   +K     N L  +  A+   YAKCG +  A  +FD    
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDL-ILGNALVDMYAKCGRVNEARCVFDRMPV 321

Query: 496 --------------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
                                       I  KDI++WN++I+ Y ++G+  +   L+  +
Sbjct: 322 RNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRML 381

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGR-----IIFKEMKESYGYEPSQEHYASMVNLL 584
           K+  V P   TF  LL A  N   +E GR     ++    +   G EP      S++++ 
Sbjct: 382 KRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMY 441

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLL 613
            + G ++E   + ++M  K D   W  ++
Sbjct: 442 MKCGSVEEGLRVFENMVEK-DHVSWNTMI 469


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 293/537 (54%), Gaps = 34/537 (6%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           N L+    ++   EK+  L+  +R   A   D  +  +LL++  ++ +   G  +H +A 
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D  + T L++MY+    + DA++LFDKM   D V WN++I  Y Q+G   ++L 
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M  S  + D       +S+     N+ +G+ +H  V  NG      +  +LI+MY 
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 381 ECEDLNCARKIFDSVKTK-------------------------------TVVSWSSMIKG 409
            C  ++ ARKI+D + +K                                +V WS+MI G
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y   DQ  EAL+LF EM  +    D +T+++++ AC ++GAL    ++H Y  + G    
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA 388

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
            SVN A+   YAKCG +  A E+F  E +  K++I+W+SMI+A+A HG+     KL+ +M
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVF--ENMPRKNVISWSSMINAFAMHGNADSAIKLFRRM 446

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           K+ ++ P+ +TF+G+L AC +AGLVEEG  +F  M   +G  P++EHY  MV+L  RA  
Sbjct: 447 KEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANF 506

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + +A EL++ MPF P+  +WG L+SAC++H E EL E  A++L+ +EP++ G  V+LSNI
Sbjct: 507 LRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNI 566

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           YA   +WN V  +R  +  +G+ K    S IEI   VH F  AD+ H Q+D IY  L
Sbjct: 567 YAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKL 623



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 142/523 (27%), Positives = 243/523 (46%), Gaps = 66/523 (12%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ----------------VFNS 90
           HL+QIHA+           IL SN      N  L  L+                  VF+ 
Sbjct: 31  HLKQIHAQ-----------ILHSNTTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQ 79

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           I +P++     +L++LS+    EKT+ +Y  + A+ +      ++P ++++ S +  F  
Sbjct: 80  IPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNH 139

Query: 150 GEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
           G +IH    KLGF  D F   G  L+  Y  C     + + +  +        WN +I  
Sbjct: 140 GLEIHGLASKLGFVDDPFIQTG--LIAMYASCRR-IMDARLLFDKMCHPDAVAWNMIIDG 196

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             QNG  + +  LF+ MR    + DS  L  +L +     +L  GR +H     + +  D
Sbjct: 197 YCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAID 256

Query: 268 LSVNTALLSM-------------------------------YSKLASLEDAKMLFDKMSD 296
             + TAL++M                               Y+KL  ++DA+ +FD+M +
Sbjct: 257 SHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIE 316

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           +D V W+ MIS Y +S  P+E+L+L   M++     D  T ++ +S+ S +  +     +
Sbjct: 317 RDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWI 376

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H  V R+G    +SV+N+LIDMY +C +L  AR++F+++  K V+SWSSMI  +  H  +
Sbjct: 377 HTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNA 436

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM-KLGLNSLSSVNTA 475
             A++LF  MK   +E + VT I +L AC + G +E  + L    + + G++        
Sbjct: 437 DSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGC 496

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           +   Y +   +  A EL +     + ++I W S++SA   HG+
Sbjct: 497 MVDLYCRANFLRKAIELIETMPF-APNVIIWGSLMSACQVHGE 538



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 183/416 (43%), Gaps = 42/416 (10%)

Query: 58  LHGLHQNL------ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           +HGL   L       + + LI  YA+   +  ++ +F+ +  P+++ +  I+    + G 
Sbjct: 143 IHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGH 202

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           Y+  L +++ M    M P       V+ +C    +   G  IH  V   G+     +  A
Sbjct: 203 YDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTA 262

Query: 172 LVEFYIKC----------DG--------------GFENEKGMIQRK---FKDLKSR---- 200
           L+  Y  C          DG              G+  + GM++     F  +  R    
Sbjct: 263 LINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA-KLGMVKDARFIFDQMIERDLVC 321

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W+++IS   ++ + +++ +LF  M  + +  D  T+++++ +   + +L     +H    
Sbjct: 322 WSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVD 381

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S F + LSVN AL+ MY+K  +L  A+ +F+ M  K+ + W+ MI+A+   G    +++
Sbjct: 382 RSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIK 441

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL-RNGSDYQVSVHNSLIDMY 379
           L   M       +  T I  + +      +E G+++ ++++  +G       +  ++D+Y
Sbjct: 442 LFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLY 501

Query: 380 CECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           C    L  A ++ +++     V+ W S++     H ++   L  F+  +L  +E D
Sbjct: 502 CRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEA--ELGEFAAKRLLELEPD 555



 Score = 40.4 bits (93), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 36  FSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S+++ C +   L Q   IH  Y+   G  + L +++ LID YA  G L  +++VF ++ 
Sbjct: 358 LSVISACSHVGALAQANWIHT-YVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMP 416

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + + +++   +  G  +  + ++++M   ++ P   T+  V+ +C        GEK
Sbjct: 417 RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEK 476

Query: 153 IHAQVV-KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           + + ++ + G     +    +V+ Y + +   +  + +    F      W SL+S    +
Sbjct: 477 LFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVH 536

Query: 212 GKSE-KSFELFKLMRME 227
           G++E   F   +L+ +E
Sbjct: 537 GEAELGEFAAKRLLELE 553


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/560 (32%), Positives = 317/560 (56%), Gaps = 39/560 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG-TLINLLRSTVELKSLELGRIVHCVA 259
           WN+LI           S   F  M  E   + +  T   L+++  E+ SL LG+ +H +A
Sbjct: 98  WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 157

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V S    D+ V  +L+  Y     L+ A  +F  + +KD V WN MI+ + Q G P ++L
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL   M     +A   T +  +S+ + ++N+E+G+Q+ + +  N  +  +++ N+++DMY
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMY 277

Query: 380 CEC-------------------------------EDLNCARKIFDSVKTKTVVSWSSMIK 408
            +C                               ED   AR++ +S+  K +V+W+++I 
Sbjct: 278 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALIS 337

Query: 409 GYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            Y  + +  EAL +F E++L+  ++++ +T+++ L AC  +GALE  +++H Y  K G+ 
Sbjct: 338 AYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR 397

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               V +A+   Y+KCG +E + E+F+   ++ +D+  W++MI   A HG  ++   ++ 
Sbjct: 398 MNFHVTSALIHMYSKCGDLEKSREVFN--SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M++++V+P+ +TF  +  AC + GLV+E   +F +M+ +YG  P ++HYA +V++LGR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G++++A + ++ MP  P   VWG LL ACK+H+   LAE+   +L+ +EP N G +VLLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           NIYA  GKW  V+++R  +R  GLKK PGCS IEI  ++HEF + D +HP ++ +Y  L 
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635

Query: 708 ILELEIMEGRRESSEELKFS 727
               E+ME  + +  E + S
Sbjct: 636 ----EVMEKLKSNGYEPEIS 651



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 144/552 (26%), Positives = 264/552 (47%), Gaps = 43/552 (7%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNL--IDSYANLGLL 81
           NQ   +   +   SL+  C + + L+Q H  ++I  G   +   +S L  + + ++   L
Sbjct: 22  NQPTTNNERSRHISLIERCVSLRQLKQTHG-HMIRTGTFSDPYSASKLFAMAALSSFASL 80

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRS 140
             +++VF+ I  PNS  + T+++  +   +   ++  +  M  +S  YP + T+PF+I++
Sbjct: 81  EYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKA 140

Query: 141 CSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
            + +     G+ +H   VK  +G D F  V ++L+  Y  C       K     K KD+ 
Sbjct: 141 AAEVSSLSLGQSLHGMAVKSAVGSDVF--VANSLIHCYFSCGDLDSACKVFTTIKEKDVV 198

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           S WNS+I+  VQ G  +K+ ELFK M  E  +    T++ +L +  ++++LE GR V   
Sbjct: 199 S-WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV----------------- 301
              +    +L++  A+L MY+K  S+EDAK LFD M +KD V                  
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317

Query: 302 --------------WNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSSIST 346
                         WN +ISAY Q+G P E+L +     ++   + +  T ++ +S+ + 
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +  +E G+ +H+ + ++G      V ++LI MY +C DL  +R++F+SV+ + V  WS+M
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL-HGYSMKLG 465
           I G   H    EA+ +F +M+   V+ + VT  N+  AC + G ++  + L H      G
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           +         I     + G +E A +  +   I     + W +++ A   H + +     
Sbjct: 498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV-WGALLGACKIHANLNLAEMA 556

Query: 526 YTQMKQSDVRPD 537
            T++ + + R D
Sbjct: 557 CTRLLELEPRND 568



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 201/410 (49%), Gaps = 37/410 (9%)

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRAD 333
           ++  S  ASLE A+ +FD++   +   WN +I AY     P  S+   + MV  S    +
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            +T    + + + + ++  G+ +H   +++     V V NSLI  Y  C DL+ A K+F 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           ++K K VVSW+SMI G+V      +AL LF +M+ E V+   VT++ +L AC  I  LE 
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD--EEK-------------- 497
            + +  Y  +  +N   ++  A+   Y KCG IE A  LFD  EEK              
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310

Query: 498 -------------IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK-QSDVRPDLITFLG 543
                        +  KDI+ WN++ISAY ++G  ++   ++ +++ Q +++ + IT + 
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
            L+AC   G +E GR I   +K+ +G   +    ++++++  + G ++++RE+   +  K
Sbjct: 371 TLSACAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-K 428

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENA-GNYVLLSNIYAA 652
            D  VW  ++    MH          +    M+  N   N V  +N++ A
Sbjct: 429 RDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 222/705 (31%), Positives = 367/705 (52%), Gaps = 95/705 (13%)

Query: 44  NPQHLQQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
           N + L+Q H  +++ + LH  N  +S  LI+        +    +F S  SP++ +Y  +
Sbjct: 13  NIRQLRQFHG-HLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCM 71

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           LK  S+ G + + + ++K     ++ P    Y ++I+     L   SG   HA V+KLG 
Sbjct: 72  LKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LAGKSGNMFHAYVLKLGH 126

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
                + +A+++ Y K +G  +  + + ++  +   + WNS+IS   ++G   ++  LF 
Sbjct: 127 IDDHFIRNAILDMYAK-NGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFN 185

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
           +M                                         +++   T++++ Y+K+ 
Sbjct: 186 MMP---------------------------------------ARNIITWTSMVTGYAKMG 206

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            LE A+  FD+M ++  V WN M SAY Q   PKE+L L   M+  G   D  T +  +S
Sbjct: 207 DLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTIS 266

Query: 343 SISTMKNIEWGK----------------------QMHAN-----VLRN-----GSDYQVS 370
           S S++ +                            MHA      + RN     GS     
Sbjct: 267 SCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAV 326

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLE 429
             N +I  Y     L+ AR++FD++  + VVSW+SMI GY  + +S  ++ LF EM    
Sbjct: 327 TWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCM 386

Query: 430 GVEVDFVTIINILPACVNIGALEH----VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
            ++ D VTI ++L AC +IGAL+     +  +   ++KLG+   S  N+ IF+ Y+KCG 
Sbjct: 387 DIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGI---SGFNSLIFM-YSKCGS 442

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  +F  + + ++D++++N++IS +A +G   +  KL   M++  + PD +T++G+L
Sbjct: 443 VADAHRIF--QTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVL 500

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           TAC +AGL+ EG+ +FK ++      P+ +HYA MV+LLGRAG +DEA+ L++ MP KP 
Sbjct: 501 TACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPH 555

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           A V+G LL+A ++H    L EL A KL  +EP+N GNYVLLSNIYA+ G+W  V ++R  
Sbjct: 556 AGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREM 615

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           ++  GLKK+ G SW+E    VH+F   D+SH Q+  IY +L  LE
Sbjct: 616 MKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELE 660


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/667 (29%), Positives = 355/667 (53%), Gaps = 4/667 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   +I  G H    + + L+  Y+    L  ++++F+++ S + + Y +++  L +
Sbjct: 281 EQLHC-LVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQ 339

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ L ++ +M    + P   T   ++ +C+ +     G ++H+  +K G  +   +
Sbjct: 340 QGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L++ Y KC       K  +  + +++   WN ++    Q      SFE+F+ M+MEG
Sbjct: 400 EGSLLDLYSKCADVETAHKFFLXTETENI-VLWNVMLVAYGQLDNLSDSFEIFRQMQMEG 458

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +  T  ++LR+   L +L LG  +H   + + F  ++ V + L+ MY+K   L  A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +  ++ + D V W  MI+ Y Q     E+L+L   M   G + D     +A+S+ + ++
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  G+Q+HA     G    +S++N+LI +Y  C  +  A   F+ +  K  +SW+S++ 
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G        EAL++F  M     EV+  T  + + A  ++  ++  + +H   +K G +S
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V+ ++   YAK G I  A   F++  +  +++I+WN+MI+ Y++HG   +  +L+ +
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFND--MSERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           MK   + P+ +TF+G+L+AC + GLV+EG   F+ M + +   P  EHY  +V+LLGRAG
Sbjct: 757 MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +D A E +K+MP   DA +W  LLSAC +H   E+ E  A  L+ +EPE++  YVL+SN
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           IYA + +W      R  ++D G+KK PG SWIE+   VH F+A D+ HP  + IY  +G 
Sbjct: 877 IYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGH 936

Query: 709 LELEIME 715
           L     E
Sbjct: 937 LNRRTSE 943



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 147/596 (24%), Positives = 292/596 (48%), Gaps = 19/596 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-----SITSPNSLLYGTILK 104
           ++H R I   G     +L  +L+D+Y   G    + +VF+     S+ S N +++   + 
Sbjct: 79  RLHCR-ISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIH-VFVA 136

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC-SCLLDFISGEKIHAQVVKLGFD 163
             S F    +   ++++M  + + P   T+  V+++C    + F   +++H++    GFD
Sbjct: 137 QKSNF----QVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFD 192

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           S   V + L++ Y K +G  E+ K +      KD+ + W ++IS   QNG  E++  LF 
Sbjct: 193 SSPLVANLLIDLYSK-NGYIESAKKVFNCICMKDIVT-WVAMISGLSQNGLEEEAILLFC 250

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M           L ++L ++ +++  ELG  +HC+ +   F  +  V   L+++YS+  
Sbjct: 251 DMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSR 310

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L  A+ +F  M+ +D V +N +IS   Q GF   +LEL   M R   + D  T  + +S
Sbjct: 311 KLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLS 370

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + +++  +  G Q+H++ ++ G    + +  SL+D+Y +C D+  A K F   +T+ +V 
Sbjct: 371 ACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVL 430

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+ M+  Y   D   ++  +F +M++EG+  +  T  +IL  C ++GAL   + +H + +
Sbjct: 431 WNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI 490

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K G      V + +   YAK G + +A  +    ++   D+++W +MI+ Y +H  +S+ 
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRIL--RRLPEDDVVSWTAMIAGYVQHDMFSEA 548

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +L+ +M+   ++ D I F   ++AC     + +G+ I  +   + G+        ++++
Sbjct: 549 LQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ-SYAAGFGADLSINNALIS 607

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
           L  R G + EA    + +  K +   W  L+S        E A     +++  E E
Sbjct: 608 LYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 244/492 (49%), Gaps = 14/492 (2%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
            Y +++  C          ++H ++ K GFD    + D+LV+ Y +      ++ G + +
Sbjct: 60  NYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFR----HGDQHGAV-K 114

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK- 247
            F +  +R    WN +I + V    + + F LF+ M  EG   +  T   +L++ V    
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
           +    + VH       F     V   L+ +YSK   +E AK +F+ +  KD V W  MIS
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
              Q+G  +E++ L   M  S      +   + +S+ + ++  E G+Q+H  V++ G   
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHS 294

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
           +  V N L+ +Y     L  A +IF ++ ++  VS++S+I G V    S  AL LF++M+
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            + ++ D +T+ ++L AC ++GAL     LH +++K G+++   +  ++   Y+KC  +E
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A + F     ++++I+ WN M+ AY +  + S  F+++ QM+   + P+  T+  +L  
Sbjct: 415 TAHKFF--LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C + G +  G  I   + ++ G++ +    + ++++  + G +  A  +++ +P + D  
Sbjct: 473 CTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVV 530

Query: 608 VWGPLLSACKMH 619
            W  +++    H
Sbjct: 531 SWTAMIAGYVQH 542



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 163/354 (46%), Gaps = 6/354 (1%)

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +L ++ GKS K  +L   M   G   +    + LL   +   SL     +HC    S F 
Sbjct: 32  TLHMEQGKS-KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFD 90

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +  +  +L+  Y +      A  +FD+ S++    WN MI  +       +   L   M
Sbjct: 91  GEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM 150

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWG--KQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           +  G   + +T  A V       +I +   KQ+H+     G D    V N LID+Y +  
Sbjct: 151 LAEGITPNGYT-FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNG 209

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  A+K+F+ +  K +V+W +MI G   +    EA+ LF +M    +      + ++L 
Sbjct: 210 YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           A   I   E  + LH   +K G +S + V   +   Y++   +  A  +F    ++S+D 
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS--TMNSRDG 327

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +++NS+IS   + G   +  +L+T+M++  ++PD IT   LL+AC + G + +G
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 205/661 (31%), Positives = 353/661 (53%), Gaps = 19/661 (2%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSS-----NLIDSYANLGLLSLS 84
           ++A     LL  C     L+ +HAR ++ H   Q L+L S      L+  YA LG L+ +
Sbjct: 60  LSAGDLLRLLPSCGTLLSLRVLHAR-LLTH--PQGLLLGSLRARTKLLSCYAALGDLASA 116

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP-AEDTY--PFVIRSC 141
           + VF+    P++  YG +L  L +   +   + ++  M  +   P A+D +     +++C
Sbjct: 117 RMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKAC 176

Query: 142 SCLLDFISGEKIHAQVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
               ++  G  +H   +K+G  D F  V ++LV+ Y K +   E  + + +R        
Sbjct: 177 IRSAEYSYGRSLHCDAIKVGGADGF--VMNSLVDMYAKAED-LECARKVFERIPDRNVVS 233

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W S+IS  VQNG +     LF  MR +       T+  ++ +   L  L  GR +H   +
Sbjct: 234 WTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVI 293

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 +  ++ ALL MY K   L+ A+ +FD++S  D V+W  MI  Y Q+G P ++L 
Sbjct: 294 KQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALR 353

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMY 379
           L +    +    +  T    +S+ + ++++  GK +H   ++ G  +Y V V N+L+DMY
Sbjct: 354 LFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNV-VGNALVDMY 412

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C+ ++ A +IF  +  K VV+W+SMI GY  ++   +AL LF +M L+G   D ++++
Sbjct: 413 AKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVV 472

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           N L A V +G L   K +HGY++K    S   V+TA+   Y KCG +  A  +FDE  ++
Sbjct: 473 NALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDE--MN 530

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            ++ +TW +MI  Y   GD +    L+ +M +  V P+ I F  +L+ C ++G+V  G+ 
Sbjct: 531 DRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKR 590

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M + +   PS +HYA MV++L RAG++++A E + +MP + D  VWG  L  C++H
Sbjct: 591 YFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELH 650

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
           S  + AE   ++++ + PE    YVL+SN+Y + G W+    +R +++++GL K PGCS 
Sbjct: 651 SRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSS 710

Query: 680 I 680
           +
Sbjct: 711 V 711


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/526 (36%), Positives = 293/526 (55%), Gaps = 12/526 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNSLI+   + G S +S   F  MR    + +  T    ++S   L  L  G+  H  A+
Sbjct: 50  WNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQAL 109

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           V  F  DL V++AL+ MYSK   L +A++LFD++  ++ V W  +I+ Y Q+    E+L 
Sbjct: 110 VFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALM 169

Query: 321 LLMCMV---------RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +    +           G   D    I+ +S+ S + N    + +H   ++ G D  + V
Sbjct: 170 VFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGV 229

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEG 430
            N+L+D Y +C +++ +RK+FD +  K VVSW+SMI  Y  +  S +A  +F  M K  G
Sbjct: 230 ENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGG 289

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
            + + VT+  +L AC + GAL     LH   +K+G  +   + T+I   Y KCG  EMA 
Sbjct: 290 GKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMAR 349

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
             FD  K   K++ +W +MI+ Y  HG   +   ++ QM  + V+P+ ITF+ +L AC +
Sbjct: 350 NAFDGMK--EKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSH 407

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           AG +EEG   F  M   Y  EP  EHY  MV+LLGRAG++ EA  L+K M  + D  +WG
Sbjct: 408 AGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWG 467

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LL+AC++H + ELAE++A +L  ++P N G YVLL+NIYA AG+W  V +MR  ++DRG
Sbjct: 468 SLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRG 527

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           L K PG S +E+   VH F   D+ HPQ + IY  L  L +++ E 
Sbjct: 528 LVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEA 573



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 224/462 (48%), Gaps = 34/462 (7%)

Query: 77  NLGLLSLSQQVFN--SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           N  L +L  + F+   + S NSL+       L++ G+  ++L  +  M    + P   T+
Sbjct: 31  NTNLTTLFNKYFDRTDVYSWNSLI-----AELARGGDSCESLRAFSWMRKLDIKPNRSTF 85

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P  I+SCS L D  SG++ H Q +  GF+S   V  AL++ Y KC G   N + +     
Sbjct: 86  PCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKC-GKLSNARVLFDEIP 144

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRME---------GAEFDSGTLINLLRSTVE 245
           +     W SLI+  VQN  + ++  +FK    E         G   DS  +I++L +   
Sbjct: 145 RRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSR 204

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           + +  +   VH VA+     K + V   LL  Y+K   +  ++ +FD M++KD V WN M
Sbjct: 205 VSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSM 264

Query: 306 ISAYYQSGFPKESLELLMCMVRSGF----RADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           I+ Y Q+G   ++ E+   M+++G        L T + A +    ++    G  +H  V+
Sbjct: 265 IAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRV---GMCLHDQVI 321

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           + G    V +  S+IDMYC+C     AR  FD +K K V SW++MI GY  H  + EAL 
Sbjct: 322 KMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALD 381

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHV-----KYLHGYSMKLGLNSLSSVNTAI 476
           +F +M   GV+ +++T I++L AC + G LE          H Y+++ G+     +   +
Sbjct: 382 VFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLL 441

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                + G I+ A  L    K+  +D + W S+++A   H D
Sbjct: 442 ----GRAGYIKEAYNLIKSMKV-RRDFVLWGSLLAACRIHKD 478



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 129/296 (43%), Gaps = 26/296 (8%)

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           K FD      V SW+S+I        S E+LR FS M+   ++ +  T    + +C  + 
Sbjct: 40  KYFDRTD---VYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L   K  H  ++  G  S   V++A+   Y+KCG +  A  LFDE  I  ++I+TW S+
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDE--IPRRNIVTWTSL 154

Query: 510 ISAYAKHGDWSQCFKLYTQM---------KQSDVRPDLITFLGLLTAC--VNAGLVEEGR 558
           I+ Y ++ D  +   ++ +          ++     D +  + +L+AC  V+   V EG 
Sbjct: 155 ITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG- 213

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
                +    G +       ++++   + G +  +R++  DM  K D   W  +++   +
Sbjct: 214 --VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK-DVVSWNSMIA---V 267

Query: 619 HSETELAELTAEKLISMEPENAGNY--VLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           +++  L+    E    M     G Y  V LS +  A     G  ++   L D+ +K
Sbjct: 268 YAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAH-EGALRVGMCLHDQVIK 322



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 95/195 (48%), Gaps = 4/195 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL + + + + L+D+YA  G +SLS++VF+ +   + + + +++   ++ G       V+
Sbjct: 222 GLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVF 281

Query: 120 KQM--ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
             M  A    Y  E T   ++ +C+       G  +H QV+K+G+ +   +  ++++ Y 
Sbjct: 282 HGMLKAGGGKYN-EVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYC 340

Query: 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           KC             K K+++S W ++I+    +G + ++ ++F  M   G + +  T I
Sbjct: 341 KCGQAEMARNAFDGMKEKNVRS-WTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFI 399

Query: 238 NLLRSTVELKSLELG 252
           ++L +      LE G
Sbjct: 400 SVLAACSHAGFLEEG 414


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 205/679 (30%), Positives = 357/679 (52%), Gaps = 22/679 (3%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSS--NLID 73
           +++L F  N ++      H  + L+ C +  HL ++H R +  H    + +      L+ 
Sbjct: 1   MRYLYFHGNASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLA 60

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           S A    +  +++VF+ +  PN+ ++  +++  S        L V+++M  + + P  D 
Sbjct: 61  SPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSP--DN 118

Query: 134 YPFVIRSCSCL----LDFIS-GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           Y       +      L + S G+ IHA V ++GF S   V   LV +Y    G F + K 
Sbjct: 119 YTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYY----GAFRSVK- 173

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
              + F+++  R    W S+IS   Q G  +K  ++   M+ EG   +  T+I+LL +  
Sbjct: 174 EASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACG 233

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           + ++++ GR V+          D+ +  AL+SMY+K   L DA   F  M  +    WN 
Sbjct: 234 QTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNT 293

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I  + Q+   KE+L +   M+  G   D  T ++ +S+ + +  +  G  +H+ +  NG
Sbjct: 294 LIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNG 353

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                 + NSLI+MY +C D+  A ++F ++  K VVSW+ M+ GYV   Q   A  LF 
Sbjct: 354 ICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFE 413

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EMK+  V    + ++++L AC  +GAL+  + +H Y  ++ +     + +A+   YAKCG
Sbjct: 414 EMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCG 473

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ-SDVRPDLITFLG 543
           CI+ A E+F   K+  K  ++WN+MI   A +G   +  +L+ QM +  D +PD IT   
Sbjct: 474 CIDTASEIF--RKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKA 531

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +L AC + G+V+EG   F  M  S G  P  EHY  +V+LLGRAG +DEA   +K MP +
Sbjct: 532 VLGACAHVGMVDEGLRYFYLMS-SLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIE 590

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           P+  +WG LL+AC++H   +L ++  + ++++ P + G +VL+SN++A   +W+ V  +R
Sbjct: 591 PNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVR 650

Query: 664 TFLRDRGLKKTPGCSWIEI 682
             +  RG++KTPG S +++
Sbjct: 651 GLMGSRGIEKTPGHSSVQV 669


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 222/705 (31%), Positives = 367/705 (52%), Gaps = 95/705 (13%)

Query: 44  NPQHLQQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
           N + L+Q H  +++ + LH  N  +S  LI+        +    +F S  SP++ +Y  +
Sbjct: 13  NIRQLRQFHG-HLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCM 71

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           LK  S+ G + + + ++K     ++ P    Y ++I+     L   SG   HA V+KLG 
Sbjct: 72  LKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LAGKSGNLFHAYVLKLGH 126

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
                + +A+++ Y K +G  +  + + ++  +   + WNS+IS   ++G   ++  LF 
Sbjct: 127 IDDHFIRNAILDMYAK-NGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFN 185

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
           +M                                         +++   T++++ Y+K+ 
Sbjct: 186 MMP---------------------------------------ARNIITWTSMVTGYAKMG 206

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            LE A+  FD+M ++  V WN M SAY Q   PKE+L L   M+  G   D  T +  +S
Sbjct: 207 DLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTIS 266

Query: 343 SISTMKNIEWGK----------------------QMHAN-----VLRN-----GSDYQVS 370
           S S++ +                            MHA      + RN     GS     
Sbjct: 267 SCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAV 326

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLE 429
             N +I  Y     L+ AR++FD++  + VVSW+SMI GY  + +S  ++ LF EM    
Sbjct: 327 TWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCM 386

Query: 430 GVEVDFVTIINILPACVNIGALEH----VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
            ++ D VTI ++L AC +IGAL+     +  +   ++KLG+   S  N+ IF+ Y+KCG 
Sbjct: 387 DIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGI---SGFNSLIFM-YSKCGS 442

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  +F  + + ++D++++N++IS +A +G   +  KL   M++  + PD +T++G+L
Sbjct: 443 VADAHRIF--QTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVL 500

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           TAC +AGL+ EG+ +FK ++      P+ +HYA MV+LLGRAG +DEA+ L++ MP KP 
Sbjct: 501 TACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPH 555

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
           A V+G LL+A ++H    L EL A KL  +EP+N GNYVLLSNIYA+ G+W  V ++R  
Sbjct: 556 AGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREM 615

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           ++  GLKK+ G SW+E    VH+F   D+SH Q+  IY +L  LE
Sbjct: 616 MKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELE 660


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 206/603 (34%), Positives = 322/603 (53%), Gaps = 38/603 (6%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           ++  C  L+     ++I AQ+V  G          LV F    +    +    I  + K+
Sbjct: 63  ILERCKSLVQL---KQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKE 119

Query: 197 LKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRI 254
           L    WN+ I   V++G  E  F L+K M + G  + D+ T   LL+      S  LG  
Sbjct: 120 LNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLG 179

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           V    +   F  D+ V+ A ++M      L  A  +F+K   +D V WN MI+   + G 
Sbjct: 180 VLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGL 239

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E++++   M     R +  T I  +SS S ++++  GK+ H  +  +G ++ + + N+
Sbjct: 240 AIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNA 299

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY------------------------ 410
           L+DMY +C +L  AR +FD++  KT+VSW++M+ GY                        
Sbjct: 300 LMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPW 359

Query: 411 -------VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
                  V   Q  EAL LF EM++  +E D VT++N L AC  +GAL+   ++H Y  +
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER 419

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             L+   ++ TA+   YAKCG I  A ++F+E  I  ++ +TW ++I   A HG+     
Sbjct: 420 HKLSIDVALGTALVDMYAKCGNIARALQVFEE--IPQRNCLTWTAVICGLALHGNAQDAL 477

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
             +++M    + PD ITFLG+L+AC + GLVEEGR  F EM   +   P  +HY+ MV+L
Sbjct: 478 SYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDL 537

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAGH++EA ELVK+MP   DA V G L  AC+++   ++ E TA KL+ ++P+++GNY
Sbjct: 538 LGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNY 597

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLL+++Y+ A  W      R  + D+G++KTPGCS +EI  +VHEF   D SHPQ++ IY
Sbjct: 598 VLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIY 657

Query: 704 TIL 706
             L
Sbjct: 658 ECL 660



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 225/503 (44%), Gaps = 44/503 (8%)

Query: 32  ATHSF-------SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLS 82
            THSF       S+L  C++   L+QI A+ ++  GL +N   +S L+   + +    L 
Sbjct: 50  TTHSFVRENPLLSILERCKSLVQLKQIQAQ-MVSTGLIENGFAASRLVAFCALSESKELD 108

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTYPFVIRSC 141
              ++   I   N   +   ++   + G+ E   ++YK+M L  ++ P   TYP +++ C
Sbjct: 109 YCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGC 168

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
                   G  +   V+K GF+    V +A +   + C           + + +DL + W
Sbjct: 169 CGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVT-W 227

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           NS+I+  V+ G + ++ +++K M  E    +  T+I ++ S  +++ L LG+  HC    
Sbjct: 228 NSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKE 287

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF------- 314
                 + +  AL+ MY K   L  A++LFD M+ K  V W  M+  Y + GF       
Sbjct: 288 HGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREI 347

Query: 315 ------------------------PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
                                    KE+L L   M       D  T +  +S+ S +  +
Sbjct: 348 LYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGAL 407

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           + G  +H  + R+     V++  +L+DMY +C ++  A ++F+ +  +  ++W+++I G 
Sbjct: 408 DVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGL 467

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSL 469
             H  + +AL  FS+M   G+  D +T + +L AC + G +E   KY    S K  ++  
Sbjct: 468 ALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPK 527

Query: 470 SSVNTAIFISYAKCGCIEMAGEL 492
               + +     + G +E A EL
Sbjct: 528 LKHYSCMVDLLGRAGHLEEAEEL 550


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 221/669 (33%), Positives = 352/669 (52%), Gaps = 15/669 (2%)

Query: 48   LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
            L+Q+ AR +   G  Q+L + S L+  +A  GL   ++ +F  +   N +    ++  L 
Sbjct: 774  LEQMLAR-VEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLV 832

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGF- 162
            K  + E    V+ +M    +    D+Y  ++ + S       G +    +HA V++ G  
Sbjct: 833  KQKQGEAAAKVFHEMK-DLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLN 891

Query: 163  DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
            D+   +G+ LV  Y K  G   +   + +   +     WNSLIS   QN  SE + E F 
Sbjct: 892  DNKVAIGNGLVNMYAK-SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFL 950

Query: 223  LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
             MR  G+   + TLI+ L S   L  + LG  +HC  +      D+SV+ ALL++Y++  
Sbjct: 951  RMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETG 1010

Query: 283  SLEDAKMLFDKMSDKDRVVWNIMISAYYQS-GFPKESLELLMCMVRSGFRADLFTAIAAV 341
               +   +F  M + D+V WN +I A   S     ++++  + M+R G+     T I  +
Sbjct: 1011 CFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINIL 1070

Query: 342  SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTV 400
            S++S++   E   Q+HA VL+       ++ N+L+  Y +C ++N   KIF  + +T+  
Sbjct: 1071 SAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDE 1130

Query: 401  VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            VSW+SMI GY+ ++   +A+ L   M  +G  +D  T   +L AC ++  LE    +H  
Sbjct: 1131 VSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHAC 1190

Query: 461  SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
             ++  + S   V +A+   Y+KCG I+ A   F  E +  +++ +WNSMIS YA+HG   
Sbjct: 1191 GIRACMESDVVVGSALVDMYSKCGRIDYASRFF--ELMPLRNVYSWNSMISGYARHGHGE 1248

Query: 521  QCFKLYTQMKQSDVRPDLIT-FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +  KL+T+M      PD +   LG+L+AC + G VEEG   FK M E Y   P  EH++ 
Sbjct: 1249 KALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSC 1308

Query: 580  MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTAEKLISMEP 637
            MV+LLGRAG +DE  + +  MP KP+  +W  +L AC   +   TEL    AE L+ +EP
Sbjct: 1309 MVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEP 1368

Query: 638  ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
            +NA NYVLL+N+YA+  KW  VAK R  +++  +KK  GCSW+ +   VH F A D+ HP
Sbjct: 1369 QNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHP 1428

Query: 698  QADAIYTIL 706
            + D IY  L
Sbjct: 1429 EKDXIYDKL 1437



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 219/427 (51%), Gaps = 8/427 (1%)

Query: 30   MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLI-LSSNLIDSYANLGLLSLSQQVF 88
            ++A   FS+L   E  +  +++HA ++I  GL+ N + + + L++ YA  G ++ +  VF
Sbjct: 862  LSAFSEFSVLE--EGRRKGREVHA-HVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVF 918

Query: 89   NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
              +   +S+ + +++  L +    E     + +M      P+  T    + SC+ L   +
Sbjct: 919  ELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIM 978

Query: 149  SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI-SL 207
             GE+IH   +KLG D+   V +AL+  Y +  G F     +     +  +  WNS+I +L
Sbjct: 979  LGEQIHCDGLKLGLDTDVSVSNALLALYAET-GCFTECLKVFSLMPEYDQVSWNSVIGAL 1037

Query: 208  AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            +       ++ + F  M   G      T IN+L +   L   E+   +H + +      D
Sbjct: 1038 SDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDD 1097

Query: 268  LSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMV 326
             ++  ALLS Y K   + + + +F +MS+ +D V WN MIS Y  +    ++++L+  M+
Sbjct: 1098 TAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMM 1157

Query: 327  RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            + G R D FT    +S+ +++  +E G ++HA  +R   +  V V ++L+DMY +C  ++
Sbjct: 1158 QKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRID 1217

Query: 387  CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT-IINILPAC 445
             A + F+ +  + V SW+SMI GY  H    +AL+LF+ M L+G   D V  ++ +L AC
Sbjct: 1218 YASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSAC 1277

Query: 446  VNIGALE 452
             ++G +E
Sbjct: 1278 SHVGFVE 1284



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 146/593 (24%), Positives = 282/593 (47%), Gaps = 33/593 (5%)

Query: 47   HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
            HLQ I       +G   NL LS+ LI+ Y  +G L  +Q++F+ +++ N + +  ++   
Sbjct: 567  HLQSIK------YGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 107  SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC------SCLLDFISGEKIHAQVVKL 160
            ++ G+ ++    ++ M      P    +   +R+C       C L    G +IH  + K 
Sbjct: 621  TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKL----GVQIHGLISKT 676

Query: 161  GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
             + S   V + L+  Y  C     + + +  R        WNS+IS+  + G    +++L
Sbjct: 677  RYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDL 736

Query: 221  FKLMRMEG-------AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            F  M+ EG        E+  G+LI    S+V+     L +++  V   S F +DL V +A
Sbjct: 737  FSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVE-KSGFLQDLYVGSA 795

Query: 274  LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRA 332
            L+S +++    +DAK +F++M  ++ V  N ++    +    + + ++   M    G  +
Sbjct: 796  LVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINS 855

Query: 333  DLFTA-IAAVSSISTM-KNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCAR 389
            D +   ++A S  S + +    G+++HA+V+R G +D +V++ N L++MY +   +  A 
Sbjct: 856  DSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADAC 915

Query: 390  KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
             +F+ +  K  VSW+S+I G   ++ S +A   F  M+  G      T+I+ L +C ++G
Sbjct: 916  SVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLG 975

Query: 450  ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
             +   + +H   +KLGL++  SV+ A+   YA+ GC     ++F    +   D ++WNS+
Sbjct: 976  WIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF--SLMPEYDQVSWNSV 1033

Query: 510  ISAYA-KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
            I A +      SQ  K + +M +       +TF+ +L+A  +  L E    I   +   Y
Sbjct: 1034 IGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI-HALVLKY 1092

Query: 569  GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
                      ++++  G+ G M+E  ++   M    D   W  ++S   +H+E
Sbjct: 1093 CLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISG-YIHNE 1144



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 204/427 (47%), Gaps = 38/427 (8%)

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           E  R +H  ++   F  +L ++  L+++Y ++  L  A+ LFD+MS+++ V W  +IS Y
Sbjct: 561 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI--STMKNIEWGKQMHANV--LRNGS 365
            Q+G P E+      MVR+GF  + +   +A+ +   S     + G Q+H  +   R GS
Sbjct: 621 TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGS 680

Query: 366 DYQVSVHNSLIDMYCECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
           D  V V N LI MY  C D  N AR +FD +  +  +SW+S+I  Y      + A  LFS
Sbjct: 681 D--VVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFS 738

Query: 425 EMKLEGV-------EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
            M+ EG+       E  F ++I    + V+ G L  ++ +     K G      V +A+ 
Sbjct: 739 SMQKEGLGFSFKPNEYTFGSLITAACSSVDFG-LCVLEQMLARVEKSGFLQDLYVGSALV 797

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             +A+ G  + A  +F  E++  +++++ N ++    K        K++ +MK      D
Sbjct: 798 SGFARFGLTDDAKNIF--EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK------D 849

Query: 538 LI-----TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS----MVNLLGRAG 588
           L+     +++ LL+A     ++EEGR   +E+          ++  +    +VN+  ++G
Sbjct: 850 LVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSG 909

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA--GNYVLL 646
            + +A  + + M  K D+  W  L+S      + E +E  AE  + M    +   N+ L+
Sbjct: 910 AIADACSVFELMVEK-DSVSWNSLISGL---DQNECSEDAAESFLRMRRTGSMPSNFTLI 965

Query: 647 SNIYAAA 653
           S + + A
Sbjct: 966 STLSSCA 972


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 208/652 (31%), Positives = 345/652 (52%), Gaps = 20/652 (3%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C + + L   + + AR I      +++ + + ++D YA  G ++ + +VF+ I +
Sbjct: 256 SVLAACASLEKLRFGKVVQARVIKCGA--EDVFVCTAIVDLYAKCGHMAEAMEVFSRIPN 313

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           P+ + +  +L   +K  +    L ++K+M    +     T   VI +C          ++
Sbjct: 314 PSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQV 373

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL-----KSRWNSLISLA 208
           HA V K GF     V  AL+  Y K       +  + ++ F+DL     ++  N +I+  
Sbjct: 374 HAWVFKSGFYLDSSVAAALISMYSK-----SGDIDLSEQVFEDLDDIQRQNIVNVMITSF 428

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            Q+ K  K+  LF  M  EG   D  ++ +LL     L  L LG+ VH   + S    DL
Sbjct: 429 SQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLDL 485

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           +V ++L ++YSK  SLE++  LF  +  KD   W  MIS + + G+ +E++ L   M+  
Sbjct: 486 TVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDD 545

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   D  T  A ++  S+  ++  GK++H   LR G D  + + ++L++MY +C  L  A
Sbjct: 546 GTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLA 605

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R+++D +     VS SS+I GY  H    +   LF +M + G  +D   I +IL A    
Sbjct: 606 RQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALS 665

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
                   +H Y  K+GL +  SV +++   Y+K G I+   + F +  I+  D+I W +
Sbjct: 666 DESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQ--INGPDLIAWTA 723

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +I++YA+HG  ++  ++Y  MK+   +PD +TF+G+L+AC + GLVEE       M + Y
Sbjct: 724 LIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDY 783

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G EP   HY  MV+ LGR+G + EA   + +M  KPDA VWG LL+ACK+H E EL ++ 
Sbjct: 784 GIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVA 843

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           A+K I +EP +AG Y+ LSNI A  G+W+ V + R  ++  G++K PG S +
Sbjct: 844 AKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/566 (25%), Positives = 285/566 (50%), Gaps = 18/566 (3%)

Query: 41  LCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG 100
           LC N +  + + A  +  + L  ++ L+ +L+  Y+N G ++ + ++F++I  P+ +   
Sbjct: 61  LC-NLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCN 119

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
            ++    +   +E++L  + +M        E +Y  VI +CS L   +  E +    +K+
Sbjct: 120 IMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKM 179

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           G+  ++ V  AL++ + K +  FE+   + +         WN++I+ A++N      F+L
Sbjct: 180 GYFFYEVVESALIDVFSK-NLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDL 238

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  M +   + DS T  ++L +   L+ L  G++V    V+    +D+ V TA++ +Y+K
Sbjct: 239 FHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQ-ARVIKCGAEDVFVCTAIVDLYAK 297

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              + +A  +F ++ +   V W +M+S Y +S     +LE+   M  SG   +  T  + 
Sbjct: 298 CGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSV 357

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF---DSVKT 397
           +S+      +    Q+HA V ++G     SV  +LI MY +  D++ + ++F   D ++ 
Sbjct: 358 ISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQR 417

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA--CVNIGALEHVK 455
           + +V  + MI  +    +  +A+RLF+ M  EG+  D  ++ ++L    C+N+G     K
Sbjct: 418 QNIV--NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLG-----K 470

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +HGY++K GL    +V +++F  Y+KCG +E + +LF  + I  KD   W SMIS + +
Sbjct: 471 QVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLF--QGIPFKDNACWASMISGFNE 528

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +G   +   L+++M      PD  T   +LT C +   +  G+ I      + G +   +
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRA-GIDKGMD 587

Query: 576 HYASMVNLLGRAGHMDEARELVKDMP 601
             +++VN+  + G +  AR++   +P
Sbjct: 588 LGSALVNMYSKCGSLKLARQVYDRLP 613



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 134/279 (48%), Gaps = 16/279 (5%)

Query: 343 SISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
           S S + N+   K + A++LR     + V +  SL+  Y     +  A K+FD++    VV
Sbjct: 57  SNSRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVV 116

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           S + MI GY  H    E+LR FS+M   G E + ++  +++ AC  + A    + +  ++
Sbjct: 117 SCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHT 176

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +K+G      V +A+   ++K    E A ++F +    S ++  WN++I+   ++ ++  
Sbjct: 177 IKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSL--SANVYCWNTIIAGALRNQNYGA 234

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNA-----GLVEEGRIIFKEMKESYGYEPSQEH 576
            F L+ +M     +PD  T+  +L AC +      G V + R+I    ++ +        
Sbjct: 235 VFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVF-------V 287

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
             ++V+L  + GHM EA E+   +P  P    W  +LS 
Sbjct: 288 CTAIVDLYAKCGHMAEAMEVFSRIP-NPSVVSWTVMLSG 325


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 298/567 (52%), Gaps = 72/567 (12%)

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +   F  M   G   D+  L + +++   L +L+  R VH +A VS F  D  V ++L+ 
Sbjct: 98  ALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVH 157

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ------------------------- 311
           MY K   + DA  +FD+M + D V W+ +++AY +                         
Sbjct: 158 MYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLIS 217

Query: 312 ----------SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
                     SG   E++ + + M   GF  D  T  + + ++  ++++  G  +H  V+
Sbjct: 218 WNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVI 277

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK----------------------- 398
           + G      V ++LIDMY +C   +   ++FD +                          
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337

Query: 399 ------------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
                        VVSW+SMI     + + +EAL LF EM++ GV+ + VTI  +LPAC 
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACG 397

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           NI AL H K  H +S++ G+++   V +A+   YAKCG I+ +   FD   I +K+++ W
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFD--GIPTKNLVCW 455

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N++I+ YA HG   +  +++  M++S  +PD+I+F  +L+AC  +GL EEG   F  M  
Sbjct: 456 NAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSS 515

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            YG E   EHYA MV LL RAG +++A  +++ MP  PDA VWG LLS+C++H+   L E
Sbjct: 516 KYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE 575

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           + AEKL  +EP N GNY+LLSNIYA+ G WN V ++R  ++++GL+K PGCSWIE+   V
Sbjct: 576 VAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635

Query: 687 HEFWAADQSHPQADAIYTILGILELEI 713
           H   A D+SHPQ   I   L  L +E+
Sbjct: 636 HMLLAGDKSHPQMTQIIENLDKLSMEM 662



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/542 (23%), Positives = 230/542 (42%), Gaps = 72/542 (13%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q HA +I+  GL  +  L++ L+  YAN    + +  V + +  PN   + T++   SK
Sbjct: 33  RQAHA-HILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSK 91

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           F ++   L  + QM  + + P     P  +++C+ L       ++H      GFDS   V
Sbjct: 92  FHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFV 151

Query: 169 GDALVEFYIKC----------DGGFENE-------------KGMI---QRKFKDLKS--- 199
             +LV  YIKC          D  FE +             +G +   +R F ++     
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGV 211

Query: 200 -----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
                 WN +I+    +G   ++  +F  M + G E D  T+ ++L +  +L+ L +G +
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD---------------- 298
           +H   +      D  V++AL+ MY K +   +   +FD+M   D                
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331

Query: 299 -------------------RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
                               V W  MI+   Q+G   E+LEL   M  +G + +  T   
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPC 391

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            + +   +  +  GK  H   LR G    V V ++LIDMY +C  +  +R  FD + TK 
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLH 458
           +V W+++I GY  H ++ EA+ +F  M+  G + D ++   +L AC   G  E    Y +
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFN 511

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             S K G+ +       +    ++ G +E A  +     ++  D   W +++S+   H +
Sbjct: 512 SMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVN-PDACVWGALLSSCRVHNN 570

Query: 519 WS 520
            S
Sbjct: 571 VS 572



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 167/374 (44%), Gaps = 40/374 (10%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T++N L ST    SL   R  H   + +    D  + T LLS Y+      DA ++ D +
Sbjct: 17  TILNCLNSTT--ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV 74

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            + +   ++ +I A+ +      +L     M+  G   D     +AV + + +  ++  +
Sbjct: 75  PEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPAR 134

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H     +G D    V +SL+ MY +C  +  A ++FD +    VVSWS+++  Y    
Sbjct: 135 QVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQG 194

Query: 415 QSLEALRLFSE-----------------------------------MKLEGVEVDFVTII 439
              EA RLFSE                                   M L G E D  TI 
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTIS 254

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++LPA  ++  L     +HGY +K GL S   V++A+   Y KC C     ++FD+  +D
Sbjct: 255 SVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQ--MD 312

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
             D+ + N+ I   +++G      +L+ Q+K   +  +++++  ++  C   G   E   
Sbjct: 313 HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALE 372

Query: 560 IFKEMKESYGYEPS 573
           +F+EM+ + G +P+
Sbjct: 373 LFREMQIA-GVKPN 385


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/525 (35%), Positives = 296/525 (56%), Gaps = 3/525 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS-LELGRIVHCVA 259
           +N+LI   V N     +  ++  MR  G   D+ T   +L++   L     +G  +H + 
Sbjct: 69  YNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLV 128

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + + F  D+ V T L+ +YSK   L DA+ +FD++ +K+ V W  +I  Y +SG   E+L
Sbjct: 129 IKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEAL 188

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   ++  G R D FT +  + + S + ++  G+ +   +  +GS   V V  SL+DMY
Sbjct: 189 GLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMY 248

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C  +  AR++FD +  K VV WS++I+GY ++    EAL +F EM+ E V  D   ++
Sbjct: 249 AKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMV 308

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            +  AC  +GALE   +  G        S   + TA+   YAKCG +  A E+F  + + 
Sbjct: 309 GVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVF--KGMR 366

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            KD + +N++IS  A  G     F ++ QM +  ++PD  TF+GLL  C +AGLV++G  
Sbjct: 367 RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHR 426

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M   +   P+ EHY  MV+L  RAG + EA++L++ MP + ++ VWG LL  C++H
Sbjct: 427 YFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLH 486

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
            +T+LAE   ++LI +EP N+G+YVLLSNIY+A+ +W+   K+R+ L  +G++K PGCSW
Sbjct: 487 KDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSW 546

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
           +E+  +VHEF   D SHP +  IY  L  L  ++ E     + E 
Sbjct: 547 VEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEF 591



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 227/483 (46%), Gaps = 27/483 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q H   + L GLHQ+  L + L+ S  +      +  VF     PN  LY T+++ +  
Sbjct: 20  KQCHCLLLRL-GLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVS 78

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-GEKIHAQVVKLGFDSFDD 167
              +   + VY  M      P   T+PFV+++C+ L  +   G  +H+ V+K GFD    
Sbjct: 79  NDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVF 138

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           V   LV  Y K   GF  +    ++ F ++  +    W ++I   +++G   ++  LF+ 
Sbjct: 139 VKTGLVCLYSK--NGFLTDA---RKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRG 193

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           +   G   DS TL+ +L +   +  L  GR +      S    ++ V T+L+ MY+K  S
Sbjct: 194 LLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGS 253

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E+A+ +FD M +KD V W+ +I  Y  +G PKE+L++   M R   R D +  +   S+
Sbjct: 254 MEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSA 313

Query: 344 ISTMKNIEWGKQMHANVLRNGSDY--QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
            S +  +E G    A  L +G ++     +  +LID Y +C  +  A+++F  ++ K  V
Sbjct: 314 CSRLGALELGNW--ARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCV 371

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
            ++++I G         A  +F +M   G++ D  T + +L  C + G ++      G+ 
Sbjct: 372 VFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVD-----DGHR 426

Query: 462 MKLGLNSLSSVNTAI------FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
              G++S+ SV   I          A+ G +  A +L     +++  I+ W +++     
Sbjct: 427 YFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIV-WGALLGGCRL 485

Query: 516 HGD 518
           H D
Sbjct: 486 HKD 488



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 193/397 (48%), Gaps = 7/397 (1%)

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           LKSL   +  HC+ +     +D  +   LL      A+ + A ++F +    +  ++N +
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN-IEWGKQMHANVLRNG 364
           I     +   ++++ +   M + GF  D FT    + + + + +    G  +H+ V++ G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            D+ V V   L+ +Y +   L  ARK+FD +  K VVSW+++I GY+      EAL LF 
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFR 192

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            +   G+  D  T++ IL AC  +G L   +++ GY  + G      V T++   YAKCG
Sbjct: 193 GLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCG 252

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +E A  +FD   +  KD++ W+++I  YA +G   +   ++ +M++ +VRPD    +G+
Sbjct: 253 SMEEARRVFD--GMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGV 310

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
            +AC   G +E G    + + +   +  +     ++++   + G + +A+E+ K M  + 
Sbjct: 311 FSACSRLGALELGNWA-RGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMR-RK 368

Query: 605 DARVWGPLLSACKM--HSETELAELTAEKLISMEPEN 639
           D  V+  ++S   M  H             + M+P+ 
Sbjct: 369 DCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDG 405



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 146/317 (46%), Gaps = 13/317 (4%)

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +K++   KQ H  +LR G      + N L+           A  +F       +  ++++
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHGYSMKLG 465
           I+G V++D   +A+ +++ M+  G   D  T   +L AC  +    HV   LH   +K G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            +    V T +   Y+K G +  A ++FDE  I  K++++W ++I  Y + G + +   L
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDE--IPEKNVVSWTAIICGYIESGCFGEALGL 190

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  + +  +RPD  T + +L AC   G +  GR I   M+ES G   +     S+V++  
Sbjct: 191 FRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRES-GSVGNVFVATSLVDMYA 249

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           + G M+EAR +   M  + D   W  L+     ++   + +   +    M+ EN     +
Sbjct: 250 KCGSMEEARRVFDGM-VEKDVVCWSALIQG---YASNGMPKEALDVFFEMQREN-----V 300

Query: 646 LSNIYAAAGKWNGVAKM 662
             + YA  G ++  +++
Sbjct: 301 RPDCYAMVGVFSACSRL 317


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/473 (36%), Positives = 281/473 (59%), Gaps = 3/473 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL+S ++ K+L  G+ +H          +  + T L+ +Y+   SL +A+ LFDK+  +
Sbjct: 52  SLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQ 111

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +WN++I  Y  +G    ++ L   M+  G R D FT    + + S +  I  G+ +H
Sbjct: 112 NLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIH 171

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             V+++G +  + V  +LIDMY +C  +  A ++FD +  +  V W+SM+  Y  +    
Sbjct: 172 EYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPD 231

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           E++ L  EM   GV     T++ ++ +  ++  L + + +HG+  + G  S   V TA+ 
Sbjct: 232 ESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALI 291

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAKCG +++A  LF  E++  K +++WN++I+ YA HG       L+ +M++ D RPD
Sbjct: 292 DMYAKCGSVKVALALF--ERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPD 348

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITF+G+L AC    L++EGR ++  M   YG  P+ +HY  M++LLG  G +DEA +L+
Sbjct: 349 HITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLI 408

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++M  KPD+ VWG LL++CK+H   ELAEL  EKLI +EP+++GNYV+L+N+YA +GKW 
Sbjct: 409 RNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWE 468

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           GV K+R  + D+ +KK   CSWIE+   V+ F A D SH  +DAIY  L  LE
Sbjct: 469 GVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLE 521



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 200/419 (47%), Gaps = 8/419 (1%)

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDT----YPFVIRSCSCLLDFISGEKIHAQVVKL 160
           NL  F +     L   Q A    +P + T    Y  +++SC        G+++HAQ   L
Sbjct: 17  NLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHL 76

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           G     D+   LV  Y        N + +  +  K     WN LI     NG  + +  L
Sbjct: 77  GIAYNQDLATKLVHLY-AVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIIL 135

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           +  M   G   D+ TL  +L++   L ++  GR +H   + S + +DL V  AL+ MY+K
Sbjct: 136 YHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAK 195

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              + DA  +FDK+  +D V+WN M++AY Q+G P ES+ L   M  +G R    T +  
Sbjct: 196 CGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTV 255

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +SS + +  + +G+++H    R+G      V  +LIDMY +C  +  A  +F+ ++ K V
Sbjct: 256 ISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRV 315

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW+++I GY  H  ++ AL LF +M+ E    D +T + +L AC     L+  + L+  
Sbjct: 316 VSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNL 374

Query: 461 SMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            ++  G+       T +      CG ++ A +L     +   D   W +++++   HG+
Sbjct: 375 MVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSV-KPDSGVWGALLNSCKIHGN 432



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 208/431 (48%), Gaps = 37/431 (8%)

Query: 12  QSGHVKFL--RFPANQTRPHMTATH------SF-----------SLLNLCENPQHL---Q 49
           ++ H  F+   FP +Q+  H  ATH      SF           SLL  C + + L   +
Sbjct: 8   KTQHTSFIFNLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGK 67

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+HA++  L G+  N  L++ L+  YA    L  ++ +F+ I   N  L+  +++  +  
Sbjct: 68  QLHAQFYHL-GIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWN 126

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G ++  +++Y +M    + P   T PFV+++CS L     G  IH  V+K G++    VG
Sbjct: 127 GPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVG 186

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
            AL++ Y KC  G   + G   R F  +  R    WNS+++   QNG  ++S  L + M 
Sbjct: 187 AALIDMYAKC--GCVMDAG---RVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMA 241

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G      TL+ ++ S+ ++  L  GR +H       F  +  V TAL+ MY+K  S++
Sbjct: 242 ANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVK 301

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  LF+++ +K  V WN +I+ Y   G    +L+L   M R   R D  T +  +++ S
Sbjct: 302 VALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKM-RKEDRPDHITFVGVLAACS 360

Query: 346 TMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFD--SVKTKTVVS 402
             + ++ G+ ++  ++R+ G    V  +  +ID+   C  L+ A  +    SVK  + V 
Sbjct: 361 RGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGV- 419

Query: 403 WSSMIKGYVTH 413
           W +++     H
Sbjct: 420 WGALLNSCKIH 430


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 203/637 (31%), Positives = 344/637 (54%), Gaps = 19/637 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL---SKFGEYEKTLLVYK 120
           ++   + L+  YA  G    +++VF+ + + + + + +++ +      F +  + LL   
Sbjct: 110 DVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSM- 168

Query: 121 QMALQSMYPAE-DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK- 178
              ++S  P    +   V+ +C    +   G  +H  V+K G DS  ++G+ALV+ Y K 
Sbjct: 169 ---MRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKF 225

Query: 179 --CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
              +   +  +GM +R     +  WNS I   +  G       LF+ M   G    S TL
Sbjct: 226 GHVEASMKVFEGMPERN----EVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITL 281

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
            +LL + VEL   +LGR VH  ++      D+ V  +L+ MY+K  SLE A  +F+K+  
Sbjct: 282 SSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEV 341

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           ++ V WN MI+   Q+G   E+  L++ M + G   +  T +  + + S M +++ GKQ+
Sbjct: 342 RNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQI 401

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           HA  +R G  + + + N+LIDMY +C  L  A+ IFD +  K  VS++++I GY     S
Sbjct: 402 HAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWS 460

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            E+L LF ++   G+E D ++ +  L AC N+ + +  K +HG  ++  L++   +   +
Sbjct: 461 FESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTL 520

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y K G ++ A ++F+  +I  KD+ +WN+MI  Y  HG     F L+  MK   V  
Sbjct: 521 LGLYTKGGMLDTASKIFN--RIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTY 578

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D ++++ +L+ C + GLVE G+  F  M  +   EP Q HYA MV+LLGR+G + E+ E+
Sbjct: 579 DHVSYIAVLSVCSHGGLVERGKKYFSHML-AQNLEPQQMHYACMVDLLGRSGQLTESVEI 637

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           + DMPF  ++ VWG LL AC++H   ELA+  A+ L  ++PE++G Y +L N+YA AG+W
Sbjct: 638 ILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNMYAEAGRW 697

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
           N   K+RT ++ R ++K P  SW++ G  +  F   D
Sbjct: 698 NEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQAFLVGD 734



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 256/523 (48%), Gaps = 26/523 (4%)

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI--SGEKIHAQVVKLGFDSFDDVGDA 171
           + LLVY  M    + P + T+PF + + +         G ++HA  ++ G  +    G+ 
Sbjct: 57  EALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAGNT 116

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRME 227
           LV FY  C        G  +R F ++ +R    WNSL+S  + N   + + +    M   
Sbjct: 117 LVAFYAAC-----GHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRS 171

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   +  +L++++ +    +    G  VH + + +     +++  AL+ MY K   +E +
Sbjct: 172 GVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEAS 231

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
             +F+ M +++ V WN  I  +  +G   + L L   M   GF     T  + + ++  +
Sbjct: 232 MKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVEL 291

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
              + G+++H   ++   +  + V NSL+DMY +   L  A  +F+ ++ + VVSW++MI
Sbjct: 292 GYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMI 351

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
              V +    EA  L  +M+ +G   + +T++N+LPAC  + +L+  K +H +S++ GL 
Sbjct: 352 ANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLM 411

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS-QCFKLY 526
               ++ A+   YAKCG + +A  +FD   +  KD +++N++I  Y++   WS +   L+
Sbjct: 412 FDLFISNALIDMYAKCGQLRLAQSIFD---LSEKDDVSYNTLILGYSQ-SPWSFESLNLF 467

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQEHYASMVN 582
            Q+    +  D I+F+G LTAC N    ++G+    ++ + +  ++ +  +     +++ 
Sbjct: 468 KQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLAN-----TLLG 522

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           L  + G +D A ++   +  K D   W  ++    MH + + A
Sbjct: 523 LYTKGGMLDTASKIFNRIKEK-DVASWNNMIMGYGMHGQIDAA 564



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 204/397 (51%), Gaps = 4/397 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL   + L + L+D Y   G +  S +VF  +   N + + + +      G Y   L ++
Sbjct: 207 GLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALF 266

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           + M+ +   P   T   ++ +   L  F  G ++H   +K   +    V ++LV+ Y K 
Sbjct: 267 RGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKF 326

Query: 180 DGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            G  E    + ++ + +++ S WN++I+  VQNG   ++F L   M+ +G   +S TL+N
Sbjct: 327 -GSLEKACAVFEKIEVRNVVS-WNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVN 384

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           LL +   + SL+ G+ +H  ++ +    DL ++ AL+ MY+K   L  A+ +FD +S+KD
Sbjct: 385 LLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKD 443

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V +N +I  Y QS +  ESL L   +   G   D  + + A+++ + + + + GK++H 
Sbjct: 444 DVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHG 503

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            ++R        + N+L+ +Y +   L+ A KIF+ +K K V SW++MI GY  H Q   
Sbjct: 504 VLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDA 563

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           A  LF  MK  GV  D V+ I +L  C + G +E  K
Sbjct: 564 AFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGK 600



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 156/332 (46%), Gaps = 7/332 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  Y I   +  ++ ++++L+D YA  G L  +  VF  I   N + +  ++ NL +
Sbjct: 298 REVHG-YSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQ 356

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFD 166
            G   +   +  +M      P   T   ++ +CS +    +G++IHA  ++ G  FD F 
Sbjct: 357 NGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLF- 415

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            + +AL++ Y KC G     + +     KD  S +N+LI    Q+  S +S  LFK +  
Sbjct: 416 -ISNALIDMYAKC-GQLRLAQSIFDLSEKDDVS-YNTLILGYSQSPWSFESLNLFKQLSS 472

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G E+D+ + +  L +   L S + G+ +H V V         +   LL +Y+K   L+ 
Sbjct: 473 VGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDT 532

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +F+++ +KD   WN MI  Y   G    +  L   M   G   D  + IA +S  S 
Sbjct: 533 ASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSH 592

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
              +E GK+  +++L    + Q   +  ++D+
Sbjct: 593 GGLVERGKKYFSHMLAQNLEPQQMHYACMVDL 624


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 284/508 (55%), Gaps = 41/508 (8%)

Query: 201 WNSLI-SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +N++I  LA  N  S +   ++K M  +G   D+ T+  +L++  E +++  G  VH  A
Sbjct: 107 YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQA 166

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +      D+ V+  L+ MY+    +  A+ +FD    +D V W  MI  Y + GF +E +
Sbjct: 167 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 226

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDM 378
            L                                      ++RN + +  V V N+L+DM
Sbjct: 227 GLY-------------------------------------IIRNSNVNLDVFVGNALVDM 249

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C D N ARK+F  +  K VVSW+SMI G     Q  E+L +F +M+  GV+ D VT+
Sbjct: 250 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 309

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + +L +C N+G LE  K++H Y  +  + +   +  A+   YAKCG I+ A  +F  + +
Sbjct: 310 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVF--QAM 367

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + KD+ ++ +MI   A HG   +   L+++M +  + PD +TF+G+LTAC + GLVEEGR
Sbjct: 368 NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 427

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F++M   Y   P  EHY  MV+LLGRAG ++EA E +++MP +PDA V G LL ACK+
Sbjct: 428 KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKI 487

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H + EL E   +K+  +EP   G YVL+SNIY++A +W    K+R  +++R L+KTPGCS
Sbjct: 488 HGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCS 547

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTIL 706
            IE+  ++HEF   D+SHP+   IY +L
Sbjct: 548 SIELDGVIHEFQKGDKSHPKIKEIYKLL 575



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 168/411 (40%), Gaps = 91/411 (22%)

Query: 26  TRPHMTATHSFSLLNL---CENPQHLQQIHARYI-ILHGLHQNLILSSNL---------I 72
           T PH    H  S L+    C++ + L+QIHA  I  +      L +S+ L         I
Sbjct: 28  TLPHDFNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPI 87

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL-SKFGEYEKTLLVYKQMALQSMYPAE 131
           D    L LL+        + +PN  LY  I++ L +   +  + L+VYKQM  + + P  
Sbjct: 88  DPRYALSLLA-------QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDN 140

Query: 132 DTYPFV--------------------------------------------IRSCSCLLD- 146
            T PFV                                            IRS   + D 
Sbjct: 141 YTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDT 200

Query: 147 -----FISGEKIHAQVVKLGF-----------------DSFDDVGDALVEFYIKCDGGFE 184
                 +S   +    VK+GF                 D F  VG+ALV+ Y+KC     
Sbjct: 201 SPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVF--VGNALVDMYLKCGDANF 258

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
             K   +   K++ S WNS+IS   Q G+ ++S  +F+ M+  G + D  TL+ +L S  
Sbjct: 259 ARKVFQEMPVKNVVS-WNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCA 317

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  LELG+ VH     +    D  +  AL+ MY+K  S++ A  +F  M+ KD   +  
Sbjct: 318 NLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTA 377

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           MI      G   ++L+L   M + G   D  T +  +++ S +  +E G++
Sbjct: 378 MIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 428



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 143/294 (48%), Gaps = 16/294 (5%)

Query: 341 VSSISTMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECE--DLNCARKIFDSVK 396
           +S++ T K+I+  KQ+HA++++     D Q+++   L  +  +    D   A  +   ++
Sbjct: 41  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 100

Query: 397 TKTVVSWSSMIKGYVT-HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           T  +  ++++I+G  T ++ S+E L ++ +M  +G+  D  TI  +L AC    A+   +
Sbjct: 101 TPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 160

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +HG ++K+GL S   V+  +   YA C  I  A ++FD      +D+++W +MI  Y K
Sbjct: 161 EVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSP--QRDLVSWTTMIQGYVK 218

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
            G   +   LY  ++ S+V  D+     L+   +  G     R +F+EM        +  
Sbjct: 219 MGFAREGVGLYI-IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK-----NVV 272

Query: 576 HYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSACKMHSETELAE 626
            + SM++ L + G   E+  + + M     KPD      +L++C      EL +
Sbjct: 273 SWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGK 326


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 213/666 (31%), Positives = 350/666 (52%), Gaps = 20/666 (3%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           +N+++ Y     L  +  +F+ +   +S+ + T++      G  E +  V + M      
Sbjct: 37  NNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFE 96

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
               T+  +++  +    F  G+++H+ ++K+G+      G AL++ Y KC+   E+   
Sbjct: 97  LDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEK-LEDAYL 155

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL-----RST 243
                 K     WN++I+   Q G  E +F L   M  EG + D GT   LL        
Sbjct: 156 SFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADF 215

Query: 244 VELKSLELGRIV-HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVV 301
             L S   G+I+ H + +V+  C       AL++ YSK  SL+DAK +FD  +  +D V 
Sbjct: 216 CNLTSQLHGKIIKHGLELVNTMC------NALITSYSKCGSLDDAKRIFDSSAGIRDLVT 269

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN +++AY        + +LL+ M   GF  DL++  + +S+         G+ +H  V+
Sbjct: 270 WNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVI 329

Query: 362 RNGSDYQVSVHNSLIDMYCECE--DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           + G +  V + N+LI MY + +   +  A  IF+S++ K  VSW+S++ G      S +A
Sbjct: 330 KRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDA 389

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           ++ F  M+   +++D  +   +L +C ++   +  + +H  ++K GL S   V++++   
Sbjct: 390 VKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFM 449

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG IE A   F+E   +S   ITWN+++  YA+HG  +    L+  M+   V+ D I
Sbjct: 450 YSKCGIIEDARRSFEEASKNSS--ITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHI 507

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TF+ +LTAC + GLVE+G    + M+  YG  P  EHYA  V+L GR+G ++EA+ L+++
Sbjct: 508 TFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEE 567

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MPFKPD  VW   L AC+     ELA   A  L+ MEPE    YVLLSN+Y    +W+  
Sbjct: 568 MPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEK 627

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRE 719
           AK++  +++RG+KK PG SWIE+   VH F A D SHP    IY +L +L  EI   R E
Sbjct: 628 AKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLEEIT--RME 685

Query: 720 SSEELK 725
            ++  K
Sbjct: 686 DADGFK 691



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H +AV      D+     +L+ Y K   L  A +LFD+M  +D V WN MI+ +   G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           + S ++L CM   GF  D +T  + +  I+       G+Q+H+ +++ G    V   ++L
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           +DMY +CE L  A   F S+     VSW++MI GY        A  L   M+ EG +VD 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   +LP   +         LHG  +K GL  ++++  A+  SY+KCG ++ A  +FD 
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
                +D++TWNS+++AY         FKL   M++    PDL ++  +++AC N  +  
Sbjct: 261 SA-GIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISN 319

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRA--GHMDEARELVKDMPFKPDARVWGPLL 613
            GR +   + +  G+E S     +++++  ++  G M EA  + + + FK D   W  +L
Sbjct: 320 NGRSLHGLVIKR-GFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFK-DRVSWNSIL 377

Query: 614 SACKMHSETELA 625
           +       +E A
Sbjct: 378 TGLSQTGSSEDA 389



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 231/479 (48%), Gaps = 17/479 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ+H+  II  G  +N+   S L+D YA    L  +   F SI+  N++ +  ++   ++
Sbjct: 119 QQVHS-IIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQ 177

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTY----PFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            G+ E    +   M  +     + TY    P +  +  C L      ++H +++K G + 
Sbjct: 178 AGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLT----SQLHGKIIKHGLEL 233

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRK--FKDLKSRWNSLISLAVQNGKSEKSFELFK 222
            + + +AL+  Y KC G  ++ K +       +DL + WNSL++  +   + + +F+L  
Sbjct: 234 VNTMCNALITSYSKC-GSLDDAKRIFDSSAGIRDLVT-WNSLLAAYLLRSQEDLAFKLLI 291

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY--SK 280
            M+  G E D  +  +++ +         GR +H + +   F + + ++ AL+SMY  S 
Sbjct: 292 DMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSD 351

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             S+++A  +F+ +  KDRV WN +++   Q+G  +++++  + M  +    D ++  A 
Sbjct: 352 YGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAV 411

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + S S +   + G+Q+H   L+ G +    V +SLI MY +C  +  AR+ F+     + 
Sbjct: 412 LRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS 471

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHG 459
           ++W++++ GY  H Q   AL LF  M+ + V++D +T + +L AC +IG +E   K+L  
Sbjct: 472 ITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRC 531

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                G+             Y + G +E A  L +E      D   W + + A    G+
Sbjct: 532 MESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPF-KPDTTVWKTFLGACRSCGN 589



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL ++   H  ++KLG  +       I   Y KC  +  A  LFDE  +  +D ++WN+M
Sbjct: 13  ALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPM--RDSVSWNTM 70

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           I+ +   G+    + +   M+      D  TF  +L     AG+   G+ +
Sbjct: 71  IAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQV 121


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/567 (33%), Positives = 298/567 (52%), Gaps = 72/567 (12%)

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +   F  M   G   D+  L + +++   L +L+  R VH +A VS F  D  V ++L+ 
Sbjct: 98  ALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVH 157

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ------------------------- 311
           MY K   + DA  +FD+M + D V W+ +++AY +                         
Sbjct: 158 MYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLIS 217

Query: 312 ----------SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
                     SG   E++ + + M   GF  D  T  + + ++  ++++  G  +H  V+
Sbjct: 218 WNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVI 277

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK----------------------- 398
           + G      V ++LIDMY +C   +   ++FD +                          
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337

Query: 399 ------------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
                        VVSW+SMI     + + +EAL LF EM++ GV+ + VTI  +LPAC 
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACG 397

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           NI AL H K  H +S++ G+++   V +A+   YAKCG I+ +   FD   I +K+++ W
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFD--GIPTKNLVCW 455

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N++I+ YA HG   +  +++  M++S  +PD+I+F  +L+AC  +GL EEG   F  M  
Sbjct: 456 NAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSS 515

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            YG E   EHYA MV LL RAG +++A  +++ MP  PDA VWG LLS+C++H+   L E
Sbjct: 516 KYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE 575

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           + AEKL  +EP N GNY+LLSNIYA+ G WN V ++R  ++++GL+K PGCSWIE+   V
Sbjct: 576 VAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635

Query: 687 HEFWAADQSHPQADAIYTILGILELEI 713
           H   A D+SHPQ   I   L  L +E+
Sbjct: 636 HMLLAGDKSHPQMTQIIEKLDKLSMEM 662



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/542 (23%), Positives = 230/542 (42%), Gaps = 72/542 (13%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q HA +I+  GL  +  L++ L+  YAN    + +  V + +  PN   + T++   SK
Sbjct: 33  RQAHA-HILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSK 91

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           F ++   L  + QM  + + P     P  +++C+ L       ++H      GFDS   V
Sbjct: 92  FHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFV 151

Query: 169 GDALVEFYIKC----------DGGFENE-------------KGMI---QRKFKDLKS--- 199
             +LV  YIKC          D  FE +             +G +   +R F ++     
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGV 211

Query: 200 -----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
                 WN +I+    +G   ++  +F  M + G E D  T+ ++L +  +L+ L +G +
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD---------------- 298
           +H   +      D  V++AL+ MY K +   +   +FD+M   D                
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331

Query: 299 -------------------RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
                               V W  MI+   Q+G   E+LEL   M  +G + +  T   
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPC 391

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            + +   +  +  GK  H   LR G    V V ++LIDMY +C  +  +R  FD + TK 
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLH 458
           +V W+++I GY  H ++ EA+ +F  M+  G + D ++   +L AC   G  E    Y +
Sbjct: 452 LVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFN 511

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             S K G+ +       +    ++ G +E A  +     ++  D   W +++S+   H +
Sbjct: 512 SMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVN-PDACVWGALLSSCRVHNN 570

Query: 519 WS 520
            S
Sbjct: 571 VS 572



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 166/374 (44%), Gaps = 40/374 (10%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+ N L ST    SL   R  H   + +    D  + T LLS Y+      DA ++ D +
Sbjct: 17  TIFNCLNSTT--ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV 74

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            + +   ++ +I A+ +      +L     M+  G   D     +AV + + +  ++  +
Sbjct: 75  PEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPAR 134

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H     +G D    V +SL+ MY +C  +  A ++FD +    VVSWS+++  Y    
Sbjct: 135 QVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQG 194

Query: 415 QSLEALRLFSE-----------------------------------MKLEGVEVDFVTII 439
              EA RLFSE                                   M L G E D  TI 
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTIS 254

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++LPA  ++  L     +HGY +K GL S   V++A+   Y KC C     ++FD+  +D
Sbjct: 255 SVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQ--MD 312

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
             D+ + N+ I   +++G      +L+ Q+K   +  +++++  ++  C   G   E   
Sbjct: 313 HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALE 372

Query: 560 IFKEMKESYGYEPS 573
           +F+EM+ + G +P+
Sbjct: 373 LFREMQIA-GVKPN 385


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/537 (34%), Positives = 290/537 (54%), Gaps = 23/537 (4%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  +I     +G    S   F L+R  G   D     +LLR++   K   L + +H   +
Sbjct: 44  WICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVI 103

Query: 261 VSDFCKDLSVNTALLSMYSKL----------------------ASLEDAKMLFDKMSDKD 298
              F  DL    AL++MYSK                         ++  + LFD+M  +D
Sbjct: 104 RLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRD 163

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN +I+   Q+G  +E+L ++  M +   R D FT  + +   +   N+  GK++H 
Sbjct: 164 VVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHG 223

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             +R+G D  V + +SLIDMY +C  +  +   F  +  +  +SW+S+I G V + +  +
Sbjct: 224 YAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQ 283

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
            L  F  M  E V+   V+  +++PAC ++ AL   K LH Y ++LG +    + +++  
Sbjct: 284 GLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLD 343

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAKCG I+MA  +F++ ++  +D+++W ++I   A HG       L+ +M    V+P  
Sbjct: 344 MYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCY 403

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           + F+ +LTAC +AGLV+EG   F  M+  +G  P  EHYA++ +LLGRAG ++EA + + 
Sbjct: 404 VAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFIS 463

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +M  +P   VW  LL+AC+ H   ELAE    K++ ++P N G +V++SNIY+AA +W  
Sbjct: 464 NMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRD 523

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            AK+R  +R  GLKKTP CSWIE+G  VH F A D+SHP  D I   L IL LE ME
Sbjct: 524 AAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNIL-LEQME 579



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 160/348 (45%), Gaps = 30/348 (8%)

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSISTMKNIEWGKQMH 357
           + W  +I  Y   G  + SL     +   G   D  LF ++   S++   K+    + +H
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTL--FKHFNLAQSLH 99

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECE----------------------DLNCARKIFDSV 395
           A V+R G  + +   N+L++MY +                         ++  RK+FD +
Sbjct: 100 AAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             + VVSW+++I G   +    EAL +  EM  E +  D  T+ +ILP       +   K
Sbjct: 160 PVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +HGY+++ G +    + +++   YAKC  +E++   F    + ++D I+WNS+I+   +
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAF--HLLSNRDAISWNSIIAGCVQ 277

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +G + Q    + +M +  V+P  ++F  ++ AC +   +  G+ +   +    G++ ++ 
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR-LGFDDNKF 336

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPF-KPDARVWGPLLSACKMHSET 622
             +S++++  + G++  AR +   +     D   W  ++  C MH   
Sbjct: 337 IASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHA 384



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           +++F+ +   + + + T++   ++ G YE+ L + K+M  +++ P   T   ++   +  
Sbjct: 153 RKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEH 212

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            +   G++IH   ++ GFD    +G +L++ Y KC      +  +    F  L +R    
Sbjct: 213 ANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKC-----TQVELSVCAFHLLSNRDAIS 267

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I+  VQNG+ ++    F+ M  E  +    +  +++ +   L +L LG+ +H   +
Sbjct: 268 WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYII 327

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSGFPKES 318
              F  +  + ++LL MY+K  +++ A+ +F+K  M D+D V W  +I      G   ++
Sbjct: 328 RLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDA 387

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSIS 345
           + L   M+  G +      +A +++ S
Sbjct: 388 VSLFEEMLVDGVKPCYVAFMAVLTACS 414



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 102/185 (55%), Gaps = 6/185 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y I HG  +++ + S+LID YA    + LS   F+ +++ +++ + +I+    +
Sbjct: 219 KEIHG-YAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQ 277

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G +++ L  +++M  + + P + ++  VI +C+ L     G+++HA +++LGFD    +
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFI 337

Query: 169 GDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             +L++ Y KC G  +  +     I+   +D+ S W ++I     +G +  +  LF+ M 
Sbjct: 338 ASSLLDMYAKC-GNIKMARYIFNKIEMCDRDMVS-WTAIIMGCAMHGHALDAVSLFEEML 395

Query: 226 MEGAE 230
           ++G +
Sbjct: 396 VDGVK 400


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 315/566 (55%), Gaps = 9/566 (1%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKC--DGGFENEKGMIQRKFKDLKS-RWNSLISL 207
           + IHA++++L  D      + L+   + C  D G  N   ++  + K+     WN++I  
Sbjct: 33  KHIHARLLRLHLDQ----DNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            V     + +  L+  MR  G   ++ T+  +L++      + LG  +H + V + +  D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V T+LLS+Y K  + +DA  +FD + DK+ V W  +I+ Y  SG  +E++     ++ 
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G + D F+ +  +++ + + +   G+ +   +  +G    V V  SL+DMY +C +L  
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  IF ++  K +VSWS+MI+GY  +    +AL LF +M+ E ++ D  T++ +L AC  
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +GAL+   +      +    S   + TA+   Y+KCG +  A E+F   K   KD + WN
Sbjct: 329 LGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK--KKDRVVWN 386

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +M+   + +G     F L++ +++  +RPD  TF+GLL  C + G V EGR  F  MK  
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +   PS EHY  MV+LLGRAG ++EA +L+ +MP KP+A VWG LL  CK+H +T LAE 
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
             +KLI +EP N+GNYV LSNIY+   +W    K+R+ ++++ ++K   CSWIEI  +VH
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 688 EFWAADQSHPQADAIYTILGILELEI 713
           EF   D+SH  ++ IY  L  L  E+
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGREL 592



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 205/409 (50%), Gaps = 12/409 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYA-NLGLLSLSQQVFNSITSPNSLLYGTILK 104
             L+ IHAR + LH    N +L  NLI   A + G  + S+ VF+ +  PN  L+ T+++
Sbjct: 30  NQLKHIHARLLRLHLDQDNYLL--NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIR 87

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            L     ++  + +Y  M      P   T PFV+++C+  LD   G KIH+ +VK G+D 
Sbjct: 88  GLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFEL 220
              V  +L+  Y+KCD  F++      + F D+  +    W ++I+  + +G   ++   
Sbjct: 148 DVFVKTSLLSLYVKCD-NFDDA----LKVFDDIPDKNVVSWTAIITGYISSGHFREAIGA 202

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           FK +   G + DS +L+ +L +   L     G  +      S   +++ V T+LL MY K
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             +LE A ++F  M +KD V W+ MI  Y  +G P+++L+L   M     + D +T +  
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +S+ +T+  ++ G    + + RN       +  +LIDMY +C  +  A +IF ++K K  
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           V W++M+ G   +  +     LFS ++  G+  D  T I +L  C + G
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGG 431


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 315/566 (55%), Gaps = 9/566 (1%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKC--DGGFENEKGMIQRKFKDLKS-RWNSLISL 207
           + IHA++++L  D      + L+   + C  D G  N   ++  + K+     WN++I  
Sbjct: 33  KHIHARLLRLHLDQ----DNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            V     + +  L+  MR  G   ++ T+  +L++      + LG  +H + V + +  D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V T+LLS+Y K  + +DA  +FD + DK+ V W  +I+ Y  SG  +E++     ++ 
Sbjct: 149 VFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLE 208

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G + D F+ +  +++ + + +   G+ +   +  +G    V V  SL+DMY +C +L  
Sbjct: 209 MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLER 268

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  IF ++  K +VSWS+MI+GY  +    +AL LF +M+ E ++ D  T++ +L AC  
Sbjct: 269 ANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACAT 328

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +GAL+   +      +    S   + TA+   Y+KCG +  A E+F   K   KD + WN
Sbjct: 329 LGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK--RKDRVVWN 386

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +M+   + +G     F L++ +++  +RPD  TF+GLL  C + G V EGR  F  MK  
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +   PS EHY  MV+LLGRAG ++EA +L+ +MP KP+A VWG LL  CK+H +T LAE 
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
             +KLI +EP N+GNYV LSNIY+   +W    K+R+ ++++ ++K   CSWIEI  +VH
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 688 EFWAADQSHPQADAIYTILGILELEI 713
           EF   D+SH  ++ IY  L  L  E+
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGREL 592



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 205/409 (50%), Gaps = 12/409 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYA-NLGLLSLSQQVFNSITSPNSLLYGTILK 104
             L+ IHAR + LH    N +L  NLI   A + G  + S+ VF+ +  PN  L+ T+++
Sbjct: 30  NQLKHIHARLLRLHLDQDNYLL--NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIR 87

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            L     ++  + +Y  M      P   T PFV+++C+  LD   G KIH+ +VK G+D 
Sbjct: 88  GLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDH 147

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFEL 220
              V  +L+  Y+KCD  F++      + F D+  +    W ++I+  + +G   ++   
Sbjct: 148 DVFVKTSLLSLYVKCD-NFDDA----LKVFDDIPDKNVVSWTAIITGYISSGHFREAIGA 202

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           FK +   G + DS +L+ +L +   L     G  +      S   +++ V T+LL MY K
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             +LE A ++F  M +KD V W+ MI  Y  +G P+++L+L   M     + D +T +  
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +S+ +T+  ++ G    + + RN       +  +LIDMY +C  +  A +IF ++K K  
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           V W++M+ G   +  +     LFS ++  G+  D  T I +L  C + G
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGG 431


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 291/512 (56%), Gaps = 1/512 (0%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N+++      G+S ++ +L+  M+  G   ++ T   +L+          G +VH   V 
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           + F  DL V  AL+ MY+K   + DA  +FD+M  +D V W  MI+ Y Q+  P ++L L
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M   GF  D  TAI+  S++  + +      +H   + NG    VSV NS++ MY +
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAK 280

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C ++  AR +FD ++ +  +SW+SM+ GY  + +  +AL LF++M+    + + VT + +
Sbjct: 281 CGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIM 340

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           + AC  +G+    + LH + +   ++  +++  AI   Y KCG ++ A E+F+  ++  +
Sbjct: 341 VSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGER 400

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+ +WN +IS Y  HG   +  +L+++M+   V P+ ITF  +L+AC +AGL++EGR  F
Sbjct: 401 DVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCF 460

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            +M +     P  +HYA MV++LGRAG ++EA  L+K +P +P   VWG LL AC++H  
Sbjct: 461 ADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 519

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           TEL E+ A  L  +EPE+ G YVL+SNIYAA+ KW  V  +R  ++ RGLKK    S IE
Sbjct: 520 TELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIE 579

Query: 682 IGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            G  VH F  ADQS P    +Y  +  L +E+
Sbjct: 580 FGTEVHGFHTADQSSPYYREVYRKVESLAIEM 611



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/433 (31%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 38  LLNLCENPQHLQQIHA----RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS--- 90
           LL  C +   L+ IH+    R  +LH  H      + LI  Y+ LG L  ++ +F+    
Sbjct: 31  LLQCCTSLTTLKLIHSSLSTRGFLLHTPH----FLARLIILYSKLGDLHSARTLFDHRHH 86

Query: 91  -----ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
                  +PNS L  T+L+  +  G   + + +Y  M    +     TYPFV++ C+  L
Sbjct: 87  HHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASEL 146

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
             + GE +H QVV+ GF S   V  ALV+ Y KC      E G     F  +  R    W
Sbjct: 147 GAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKC-----GEIGDAHEVFDRMLIRDVVCW 201

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
            ++I+L  Q  +  K+  LF+ M+ EG   D  T I++  +  +L    +   VH  AV+
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVL 261

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           + F  D+SV  +++ MY+K  ++E A+++FD+M +++ + WN M+S Y Q+G P ++L L
Sbjct: 262 NGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 321

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M  S    +  TA+  VS+ S + +   G+++H  V+ +  D   ++ N+++DMY +
Sbjct: 322 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 381

Query: 382 CEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
           C DL+ A ++F++ +   + V SW+ +I GY  H    EAL LFS M++EGVE + +T  
Sbjct: 382 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFT 441

Query: 440 NILPACVNIGALE 452
           +IL AC + G ++
Sbjct: 442 SILSACSHAGLID 454


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 325/561 (57%), Gaps = 14/561 (2%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           + +H  ++K G   F   G  L++ YIKC    E  K      F ++ +R    WNS+IS
Sbjct: 21  KSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARK-----LFDEMPNRHIVTWNSMIS 74

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-C 265
             V  GK++++ EL+  M  EG   D+ T   + ++  E+     G+  H +AVV  F  
Sbjct: 75  SHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEV 134

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            D  V T ++ MY+K   ++DA+ +FD++ DKD V++  +I  Y Q G   E+LE+   M
Sbjct: 135 SDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDM 194

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           V S  + + +T  + + S   + ++  GK +H  V+++G +  V+   SL+ MY +C  +
Sbjct: 195 VGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMV 254

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             + K+F+S+   + V+W+S I G V + +   AL +F EM    +  +  T  +IL AC
Sbjct: 255 EDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHAC 314

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            ++  LE  + +H  ++KLG++    V+ A+   Y KCG +E A  +F  E +   D+++
Sbjct: 315 SSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVF--ESLTELDVVS 372

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
            N+MI AYA++G   +  +L+ +MK+   +P+++TF+ +L AC NAGLVEEG  IF  ++
Sbjct: 373 INTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIR 432

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            ++  E +++HY  M++LLGRA   +EA  L+++    PD   W  LL+ACK+H E E+A
Sbjct: 433 NNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMA 491

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           E   +K++   P + G ++LL+NIYA+AGKW+ V +M++  RD  LKKTP  SW++I + 
Sbjct: 492 EKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDRE 551

Query: 686 VHEFWAADQSHPQADAIYTIL 706
           VH F A D SHP+A  I  +L
Sbjct: 552 VHTFMAGDLSHPRAHEISEML 572



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 227/470 (48%), Gaps = 23/470 (4%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           LID Y    +++ ++++F+ + + + + + +++ +    G+ ++ + +Y  M  + + P 
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPD 100

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGM 189
             T+  + ++ S +     G+K H   V LGF+  D  V   +V+ Y K  G  ++ + +
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKF-GKMKDARFV 159

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
             R        + +LI    Q G   ++ E+F+ M     + +  TL ++L S   L  L
Sbjct: 160 FDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDL 219

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             G+++H + V S     ++  T+LL+MYSK   +ED+  +F+ ++    V W   I   
Sbjct: 220 VNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGL 279

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            Q+G  + +L +   M+R     + FT  + + + S++  +E G+Q+HA  ++ G D   
Sbjct: 280 VQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNK 339

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V  +LI +Y +C ++  AR +F+S+    VVS ++MI  Y  +    EAL LF  MK  
Sbjct: 340 YVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKL 399

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI--- 486
           G + + VT I+IL AC N G +E             + SL   N +I ++     C+   
Sbjct: 400 GHKPNVVTFISILLACNNAGLVEE---------GCQIFSLIRNNHSIELTRDHYTCMIDL 450

Query: 487 -------EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
                  E A  L +E K  + D+I W ++++A   HG+     K   +M
Sbjct: 451 LGRAKRFEEAAMLIEEGK--NPDVIQWRTLLNACKIHGEVEMAEKFMKKM 498



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 183/387 (47%), Gaps = 18/387 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q+ H   ++L     +  +++ ++D YA  G +  ++ VF+ +   + +L+  ++   ++
Sbjct: 121 QKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQ 180

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L V++ M    + P E T   V+ SC  L D ++G+ IH  VVK G +S    
Sbjct: 181 RGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVAS 240

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKS-------RWNSLISLAVQNGKSEKSFELF 221
             +L+  Y KC+        M++   K   S        W S I   VQNG+ E +  +F
Sbjct: 241 QTSLLTMYSKCN--------MVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMF 292

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
           + M       +  T  ++L +   L  LE G  +H V V      +  V+ AL+ +Y K 
Sbjct: 293 REMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKC 352

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            ++E A+ +F+ +++ D V  N MI AY Q+GF  E+LEL   M + G + ++ T I+ +
Sbjct: 353 GNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISIL 412

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVKTKT 399
            + +    +E G Q+ + ++RN    +++   +  +ID+    +    A  + +  K   
Sbjct: 413 LACNNAGLVEEGCQIFS-LIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPD 471

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEM 426
           V+ W +++     H +   A +   +M
Sbjct: 472 VIQWRTLLNACKIHGEVEMAEKFMKKM 498


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 201/632 (31%), Positives = 346/632 (54%), Gaps = 19/632 (3%)

Query: 32  ATHSFSLLNLCEN---PQHLQQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQV 87
           AT   S+L  C      +  ++IHA  ++L G + QN  + +     YA    ++ + +V
Sbjct: 311 ATTLTSVLRACATVGAHEQGRRIHA--LVLAGPYTQNTTVLNAAASLYAKCSRVADASRV 368

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS--CLL 145
           F+SI   +++ +  I+   +K G +   + + +QM ++   P + T+  ++ SCS   LL
Sbjct: 369 FSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALL 428

Query: 146 -------DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
                      G ++H+Q++  G D    +G+ LV+ Y +C G  ++ +   Q   +   
Sbjct: 429 KQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRC-GSLDDARAAFQGIHQRNV 487

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             W  LISL VQNG++ +  EL K M +EG E +  T I+LL +      L LG+ +H  
Sbjct: 488 FSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHER 547

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
                   D+  + ALL+MY+   SL++A+++F++M  +D V W I+ISAY  +G+P E+
Sbjct: 548 IRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEA 607

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           L+L   M +   R D  T I+ + + ++++ +  GK +H  ++ +G +  V V  +++  
Sbjct: 608 LQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSF 667

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +CE +  AR++FD +  K +V W++MI  Y  +    +A  L+ EM    +  + VT+
Sbjct: 668 YGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTL 727

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-GCIEMAGELFDEEK 497
           I +L +C +   +E    LH  +   G  S +SV  A+   YAKC G +E A   F  E 
Sbjct: 728 ITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAF--ES 785

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           + SK++++W+S+++AYA++G+  +   L+  M Q  V P+++TF  +L AC +AGL +EG
Sbjct: 786 VASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEG 845

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
              F  M+  +  EP+ EHY  MVNLL ++G + +A   +  MP +PDA  W  LL AC+
Sbjct: 846 WSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACE 905

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           +H++ E   L A++L+  EP N+  YVLL NI
Sbjct: 906 VHTDKEYGALAAKQLLDAEPRNSAAYVLLYNI 937



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 168/617 (27%), Positives = 299/617 (48%), Gaps = 23/617 (3%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNL----ILSSNLIDSYANLGLLSLSQQVFNSIT 92
           SLLN C     L+    R +  H L  +     I+ + LI  Y++ G L  +  VF    
Sbjct: 116 SLLNACFASGDLK--FGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSF 173

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            P+   + T++   ++ G+ E     + +M  + +   E T+  V+ +CS L    +G+ 
Sbjct: 174 RPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKH 233

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H   +  G D    + ++L+  Y KC    +  + +  R  +     W++ I+   Q+ 
Sbjct: 234 VHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHW 293

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           ++ K+FE   LM +EG + ++ TL ++LR+   + + E GR +H + +   + ++ +V  
Sbjct: 294 EAIKTFE---LMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLN 350

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           A  S+Y+K + + DA  +F  +  KD V WN ++SAY + G  ++++ L   M   GF  
Sbjct: 351 AAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVP 410

Query: 333 DLFTAIAAVSSIS---------TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           D  T I  + S S           K++  G+Q+H+ ++ NG D    + N L+ MY  C 
Sbjct: 411 DDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCG 470

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L+ AR  F  +  + V SW+ +I   V + ++ E L L   M LEG E + +T I++L 
Sbjct: 471 SLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLG 530

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC   G L   K +H      GL S    + A+   Y  C  ++ A  +F  E++  +D+
Sbjct: 531 ACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVF--ERMVFRDV 588

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W  +ISAYA  G   +  +LY +M+Q   RPD +T + +L AC +   + EG+ I + 
Sbjct: 589 VSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHER 648

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSET 622
           +  S G E       ++V+  G+   +++AR+ V D     D   W  ++ A  + H E 
Sbjct: 649 IVAS-GVETDVFVGTAVVSFYGKCEAVEDARQ-VFDRILDKDIVCWNAMIGAYAQNHCEE 706

Query: 623 ELAELTAEKLISMEPEN 639
           +   L  E + +  P N
Sbjct: 707 KAFALYLEMVENQMPPN 723



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 165/608 (27%), Positives = 297/608 (48%), Gaps = 23/608 (3%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL-LSLSQQVF 88
           +T   + S L + E  +H+     R  +  GL  +L + ++LI  Y         +++VF
Sbjct: 216 LTVLDTCSSLEVLETGKHVH----RLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVF 271

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
             I+ P+ + +   +   + +G++ + +  ++ M L+ + P   T   V+R+C+ +    
Sbjct: 272 LRISRPSVISWSAFI---AAYGQHWEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHE 328

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G +IHA V+   +     V +A    Y KC    +  +       KD  S WN+++S  
Sbjct: 329 QGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVS-WNAIVSAY 387

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL---------KSLELGRIVHCVA 259
            + G    +  L + M++EG   D  T I +L S  +          KSL  GR VH   
Sbjct: 388 AKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQM 447

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + +    D  +   L+ MY +  SL+DA+  F  +  ++   W I+IS   Q+G   E L
Sbjct: 448 ISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGL 507

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           ELL  M   G  A+  T I+ + + S   ++  GK +H  +   G +  +   N+L++MY
Sbjct: 508 ELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMY 567

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
             CE L+ AR +F+ +  + VVSW+ +I  Y      LEAL+L+  M+ E    D VT+I
Sbjct: 568 TTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLI 627

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC ++ AL   K +H   +  G+ +   V TA+   Y KC  +E A ++FD  +I 
Sbjct: 628 SVLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFD--RIL 685

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            KDI+ WN+MI AYA++    + F LY +M ++ + P+ +T + LL +C +   +E G  
Sbjct: 686 DKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSS 745

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGR-AGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
           + +E   + GY        +++N+  +  G+++ A+   + +  K +   W  +++A   
Sbjct: 746 LHRE-AAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVASK-NVVSWSSIVAAYAR 803

Query: 619 HSETELAE 626
           + E + A 
Sbjct: 804 NGEEDRAR 811



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 249/484 (51%), Gaps = 19/484 (3%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M L+ +   E T    + +C+ L D + G++IHA+++  G  +   + ++LV  Y KC G
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKC-G 59

Query: 182 GFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
             E  +    R   +DL S WN++I++  Q+   +++ +L+   R+EG + D  T  +LL
Sbjct: 60  SVEEARNAFDRMPERDLIS-WNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLL 118

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +      L+ GR++H   + + F  D  V   L+SMYS   SL+DA  +F+     D  
Sbjct: 119 NACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVC 178

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            W  +I+AY + G  + +      M + G R++  T +  + + S+++ +E GK +H   
Sbjct: 179 TWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLA 238

Query: 361 LRNGSDYQVSVHNSLIDMYCEC-EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           L +G D+ + + NSLI MY +C    + AR++F  +   +V+SWS+ I  Y  H    EA
Sbjct: 239 LGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQH---WEA 295

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           ++ F  M LEGV+ +  T+ ++L AC  +GA E  + +H   +       ++V  A    
Sbjct: 296 IKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASL 355

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKC  +  A  +F    I  KD ++WN+++SAYAK G +     L  QM+     PD I
Sbjct: 356 YAKCSRVADASRVF--SSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDI 413

Query: 540 TFLGLLTACVNAGLVEE---------GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           TF+ +L +C  + L+++         GR +  +M  S G +        +V + GR G +
Sbjct: 414 TFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMI-SNGLDGDTYLGNLLVQMYGRCGSL 472

Query: 591 DEAR 594
           D+AR
Sbjct: 473 DDAR 476



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 192/393 (48%), Gaps = 8/393 (2%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M +EG   D  TL+N + +   L     G+ +H   + S     + ++ +L+ MY K  S
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E+A+  FD+M ++D + WN MI+ Y Q    K++++L       G + D  T  + +++
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNA 120

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
                ++++G+ +H + L         V N LI MY +C  L+ A  +F+      V +W
Sbjct: 121 CFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTW 180

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I  Y  H +   A   +S+M  EG+  + +T + +L  C ++  LE  K++H  ++ 
Sbjct: 181 TTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALG 240

Query: 464 LGLNSLSSVNTAIFISYAKCG-CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            GL+    +  ++   Y KC    + A E+F   +I    +I+W++ I+AY +H +  + 
Sbjct: 241 SGLDFSLRMENSLISMYGKCSRHPDEAREVF--LRISRPSVISWSAFIAAYGQHWEAIKT 298

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           F+L   M    V+P+  T   +L AC   G  E+GR I   +  +  Y  +     +  +
Sbjct: 299 FEL---MNLEGVKPNATTLTSVLRACATVGAHEQGRRI-HALVLAGPYTQNTTVLNAAAS 354

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           L  +   + +A  +   +P K DA  W  ++SA
Sbjct: 355 LYAKCSRVADASRVFSSIPCK-DAVSWNAIVSA 386


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 203/670 (30%), Positives = 363/670 (54%), Gaps = 12/670 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H + +   G  +++ + ++L+D Y         + +F+ +   N + + ++L   ++
Sbjct: 124 RQVHCQSL-KSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++ + +  QM ++ + P   T+  V+ + +       G ++HA +VK GF+    V
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +AL+  Y+K +   + E        +D    WN +I      G   + F++F  MR+ G
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRD-SVTWNIMIGGYAAIGFYLEGFQMFHRMRLAG 301

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            +         L+   + + L   + +HC  V + +     + TAL+  YSK +S+++A 
Sbjct: 302 VKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAF 361

Query: 289 MLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            LF  M+D   + V W  MI  + Q+   +++++L   M R G R + FT     S++  
Sbjct: 362 KLFS-MADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFT----YSTVLA 416

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            K      Q+HA +++   +   SV  +L+D Y +  ++  + ++F S+  K +V+WS+M
Sbjct: 417 GKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAM 476

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-LEHVKYLHGYSMKLG 465
           + G      S +A+ +F ++  EGV+ +  T  +++ AC +  A +EH K +H  ++K G
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            ++   V++A+   Y+K G IE A ++F  +  + +DI++WNSMI+ Y +HGD  +  ++
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQ--EERDIVSWNSMITGYGQHGDAKKALEV 594

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M+   +  D +TF+G+LTAC +AGLVEEG   F  M + Y  +   EHY+ MV+L  
Sbjct: 595 FQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYS 654

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG  D+A +++  MPF     +W  LL+AC++H   EL +L AEKL+S++P +A  YVL
Sbjct: 655 RAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSNI+A AG W   A +R  + +R +KK  GCSWIEI   +  F A D SHP +D +Y  
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAK 774

Query: 706 LGILELEIME 715
           L  L +++ +
Sbjct: 775 LEELSIKLKD 784



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/548 (25%), Positives = 267/548 (48%), Gaps = 19/548 (3%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           + Q+F+     +   Y  +L + S+     + L ++K +    +     T    ++ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWN 202
           L D + G ++H Q +K GF     VG +LV+ Y+K +  FE+ +G+  +   K++ S W 
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTE-DFEDGRGIFDEMGIKNVVS-WT 174

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           SL+S   +NG +++   L   M+MEG   +  T   +L +  +   +E G  VH + V +
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F     V  AL+ MY K   + DA+ +FD M  +D V WNIMI  Y   GF  E  ++ 
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M  +G +        A+   S  + + + KQ+H  V++NG ++   +  +L+  Y +C
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKC 354

Query: 383 EDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
             ++ A K+F        VV+W++MI G+V ++ + +A+ LF +M  EGV  +  T   +
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 442 L---PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           L   P+ +       +  LH   +K     + SV TA+  +Y K G +  +  +F    I
Sbjct: 415 LAGKPSSL-------LSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF--YSI 465

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEG 557
            +KDI+ W++M++  A+  D  +  +++ Q+ +  V+P+  TF  ++ AC  +A  VE G
Sbjct: 466 PAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHG 525

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           + I     +S G   +    ++++ +  + G+++ A ++      + D   W  +++   
Sbjct: 526 KQIHATAVKS-GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYG 583

Query: 618 MHSETELA 625
            H + + A
Sbjct: 584 QHGDAKKA 591


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 214/690 (31%), Positives = 362/690 (52%), Gaps = 21/690 (3%)

Query: 36  FSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            ++L  C     L Q   IHA +I+  GL    +L++ L+  Y + G ++ +  +F  + 
Sbjct: 132 LAVLKACARLGDLSQGRSIHA-WIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME 190

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
                    I  N ++ G+    L ++++M L+ + PA  T    +  C+ +      + 
Sbjct: 191 RDLVSWNAAIAAN-AQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ---AQA 246

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH  V + G +    V  AL   Y +    ++ ++   +   +D+ S WN+++    Q+G
Sbjct: 247 IHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVS-WNAMLGAYAQHG 305

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              ++  LF  M  EG      TL+N   ++    SL  GR++H  A+     +D+ +  
Sbjct: 306 HMSEAALLFARMLHEGISPSKVTLVN---ASTGCSSLRFGRMIHGCALEKGLDRDIVLGN 362

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF-- 330
           ALL MY++  S E+A+ LF ++   + V WN MI+   Q G  K ++EL   M   G   
Sbjct: 363 ALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAP 421

Query: 331 -RADLFTAIAAVSS-ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
            RA     + AV+S     + +  G+++H+ ++  G   + ++  +++ MY  C  ++ A
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEA 481

Query: 389 RKIFDSVKTKT---VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
              F     +    VVSW+++I     H     AL  F  M L GV  + +T + +L AC
Sbjct: 482 AASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDAC 541

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
               AL   + +H +    G+ S   V TA+   Y +CG +E A E+F++  ++ +D++ 
Sbjct: 542 AGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVE-RDVVI 600

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           +N+MI+AY+++G   +  KL+ +M+Q   RPD  +F+ +L+AC + GL +EG  IF+ M+
Sbjct: 601 FNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMR 660

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +SYG  PS++HYA  V++LGRAG + +A EL++ M  KP   VW  LL AC+ + + +  
Sbjct: 661 QSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRG 720

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
            L    +  ++P +   YV+LSNI A AGKW+  A++RT +  RGL+K  G SWIEI   
Sbjct: 721 RLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSR 780

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME 715
           VHEF A D+SHP+++ IY  L  L  EI E
Sbjct: 781 VHEFVAGDRSHPRSEEIYRELERLHAEIRE 810



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 165/601 (27%), Positives = 295/601 (49%), Gaps = 25/601 (4%)

Query: 23  ANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLG 79
           +  TRP     H   LL    + + L Q   IHAR + L GL + L   ++L+  Y    
Sbjct: 24  SGATRP----AHLVRLLRAAGDDRLLSQGRRIHARIVSL-GLEEEL--GNHLLRLYLKCE 76

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
            L   ++VF+ +   +   + TI+   ++ G+ ++ + ++ +M  + +     T+  V++
Sbjct: 77  SLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLK 136

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
           +C+ L D   G  IHA +V+ G      + + L+  Y  C G   +   + ++  +DL S
Sbjct: 137 ACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSC-GCVASAMLLFEKMERDLVS 195

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN+ I+   Q+G    + ELF+ M++EG      TL+  L     ++  +    +H + 
Sbjct: 196 -WNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQ---AIHFIV 251

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
             S   + L V+TAL S Y++L  L  AK +FD+ +++D V WN M+ AY Q G   E+ 
Sbjct: 252 RESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAA 311

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   M+  G      T + A +  S+++   +G+ +H   L  G D  + + N+L+DMY
Sbjct: 312 LLFARMLHEGISPSKVTLVNASTGCSSLR---FGRMIHGCALEKGLDRDIVLGNALLDMY 368

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
             C     AR +F  +     VSW++MI G     Q   A+ LF  M+LEG+     T +
Sbjct: 369 TRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYL 427

Query: 440 NILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           N+L A  +      A+   + LH   +  G  S  ++ TA+   YA CG I+ A   F  
Sbjct: 428 NLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQR 487

Query: 496 EKI-DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             + D  D+++WN++IS+ ++HG   +    + +M    V P+ IT + +L AC  A  +
Sbjct: 488 GAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAAL 547

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            EG I+   ++ S G E +     ++ ++ GR G ++ ARE+ + +  + D  ++  +++
Sbjct: 548 TEGEIVHDHLRHS-GMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIA 606

Query: 615 A 615
           A
Sbjct: 607 A 607



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 236/482 (48%), Gaps = 20/482 (4%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G +IHA++V LG +  +++G+ L+  Y+KC+   + E+   + + +D ++ W ++I+   
Sbjct: 48  GRRIHARIVSLGLE--EELGNHLLRLYLKCESLGDVEEVFSRLEVRD-EASWTTIITAYT 104

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++G+++++  +F  M+ EG   D+ T + +L++   L  L  GR +H   V S       
Sbjct: 105 EHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSV 164

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           +   LL +Y     +  A +LF+KM ++D V WN  I+A  QSG    +LEL   M   G
Sbjct: 165 LANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEG 223

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            R    T + A++  +T++     + +H  V  +G +  + V  +L   Y     L  A+
Sbjct: 224 VRPARITLVIALTVCATIRQ---AQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAK 280

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++FD    + VVSW++M+  Y  H    EA  LF+ M  EG+    VT++N    C    
Sbjct: 281 EVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC---S 337

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L   + +HG +++ GL+    +  A+   Y +CG  E A  LF     ++   ++WN+M
Sbjct: 338 SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNA---VSWNTM 394

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGLVEEGRIIFKEMK 565
           I+  ++ G   +  +L+ +M+   + P   T+L LL A  +    A  + EGR +   + 
Sbjct: 395 IAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIV 454

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD--MPFKPDARVWGPLLSACKMHSETE 623
            S GY        ++V +    G +DEA    +   M  + D   W  ++S+   H   +
Sbjct: 455 -SCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGK 513

Query: 624 LA 625
            A
Sbjct: 514 RA 515



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 162/335 (48%), Gaps = 36/335 (10%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+++HA ++  G + ++   N L+ +Y +CE L    ++F  ++ +   SW+++I  Y  
Sbjct: 48  GRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTE 105

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           H Q+  A+ +F  M+ EGV  D VT + +L AC  +G L   + +H + ++ GL   S +
Sbjct: 106 HGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVL 165

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
              +   Y  CGC+  A  LF  EK++ +D+++WN+ I+A A+ GD     +L+ +M+  
Sbjct: 166 ANLLLHIYGSCGCVASAMLLF--EKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQLE 222

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            VRP  IT +  LT C     + + + I   ++ES G E +     ++ +   R GH+ +
Sbjct: 223 GVRPARITLVIALTVCAT---IRQAQAIHFIVRES-GLEQTLVVSTALASAYARLGHLYQ 278

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A+E V D   + D   W  +L A   H     A L   +++                   
Sbjct: 279 AKE-VFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLH------------------ 319

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
                G++  +  L    +  + GCS +  G+++H
Sbjct: 320 ----EGISPSKVTL----VNASTGCSSLRFGRMIH 346


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 219/684 (32%), Positives = 351/684 (51%), Gaps = 20/684 (2%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLS 107
            +  H R I   G  +++++ + +I  YA  G  S +  VF  I     ++ + T+L    
Sbjct: 355  RGFHGR-IWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASE 413

Query: 108  KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC--LLDFISGEKIHAQVVKLGFDSF 165
                + K +  +  M L  + P + ++  ++ +CS    LDF  G KIH+ ++    D  
Sbjct: 414  DRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDF--GRKIHSLILTRRRDYV 471

Query: 166  DD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFEL 220
            +  V   LV  Y KC    E E   +  K   L SR    WN ++    QN +S+++F  
Sbjct: 472  ESSVATMLVSMYGKCGSISEAE---LVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 221  FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
               M   G   D+ +  ++L S    +  ++ R+     ++    +   + TAL+SM+ +
Sbjct: 529  LMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMC----ILESGYRSACLETALISMHGR 584

Query: 281  LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
               LE A+ +F++M   D V W  M+SA  ++   KE   L   M   G   D FT    
Sbjct: 585  CRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATT 644

Query: 341  VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
            + +      +  GK +HA V   G +  ++V N+L++MY  C D   A   F+++K + +
Sbjct: 645  LDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 401  VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            VSW+ M   Y     + EA+ LF +M+LEGV+ D +T    L        +   K  H  
Sbjct: 705  VSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHAL 764

Query: 461  SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            + + GL+S  SV T +   YAKCG ++ A  LF         ++  N++I A A+HG   
Sbjct: 765  AAESGLDSDVSVATGLVKLYAKCGKLDEAMSLF--RGACDWTVVLLNAIIGALAQHGFSE 822

Query: 521  QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
            +  K++ +M+Q  VRPD+ T + +++AC +AG+VEEG   F  MKE +G  P+ EHYA  
Sbjct: 823  EAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACF 882

Query: 581  VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
            V+LLGRAG ++ A ++++ MPF+ +  VW  LL  CK+  + EL E  A++++ ++P N+
Sbjct: 883  VDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNS 942

Query: 641  GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
              +V+LSNIY A GKW      R  + D  +K  PG SW EIGK VHEF A D+SHP+ D
Sbjct: 943  AAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTD 1002

Query: 701  AIYTILGILELEIMEGRRESSEEL 724
             IY +L  LEL +     E+ + L
Sbjct: 1003 EIYVVLDKLELLMRRAGYEADKGL 1026



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 152/596 (25%), Positives = 288/596 (48%), Gaps = 30/596 (5%)

Query: 37  SLLNLCENPQHLQQ-IHARYIILH-GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +LL  C +   L +  HA  +I + GL Q+L L + LI+ Y   G L  +  +F+ +   
Sbjct: 30  ALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEER 89

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDFISGEK 152
           N + +  ++   ++ G + +   +++ M L+S   A ++Y  V  + +C+   D   G  
Sbjct: 90  NVVSWTALISANAQCGAFARAFALFRTMLLES-SAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 153 IHAQVVKLGFDSFDD----VGDALVEFYIKCDGGFENEKGM-IQRKFKDLKSRWNSLISL 207
           IHA + +LG +        VG+A++  Y KC G  E+   + +    KD+ S W ++   
Sbjct: 149 IHAMIWELGLERASTTATLVGNAMINMYAKC-GSLEDAIAVFLAIPEKDVVS-WTAMAGA 206

Query: 208 AVQNGK-SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             Q  +    +  +F+ M ++    +  T I  L +   L+    G  +H +   +    
Sbjct: 207 YAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGF 263

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLM 323
           D   + AL++MY K    E A  +F  M+ +   D V WN MISA  ++G   +++ +  
Sbjct: 264 DPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFR 323

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWG--KQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            +   G R +  T I  +++++    +++G  +  H  +  +G    V + N++I MY +
Sbjct: 324 RLRLEGMRPNSVTLITILNALAA-SGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAK 382

Query: 382 CEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           C   + A  +F  ++ K  V+SW++M+          + +  F  M L G++ + V+ I 
Sbjct: 383 CGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSL-SSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           IL AC N  AL+  + +H   +    + + SSV T +   Y KCG I  A  +F E  + 
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLP 502

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           S+ ++TWN M+ AYA++    + F    +M Q  V PD ++F  +L++C  +   +E ++
Sbjct: 503 SRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS---QEAQV 559

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +   + ES GY  +    A ++++ GR   +++AR +  +M    D   W  ++SA
Sbjct: 560 LRMCILES-GYRSACLETA-LISMHGRCRELEQARSVFNEMD-HGDVVSWTAMVSA 612



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 149/586 (25%), Positives = 288/586 (49%), Gaps = 34/586 (5%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQN----LILSSNLIDSYANLGLLSLSQQVFN 89
           ++LN C N + L   + IHA    L GL +      ++ + +I+ YA  G L  +  VF 
Sbjct: 132 AMLNACANSRDLAIGRSIHAMIWEL-GLERASTTATLVGNAMINMYAKCGSLEDAIAVFL 190

Query: 90  SITSPNSLLYGTILKNLSKFGE-YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           +I   + + +  +    ++    Y   L ++++M LQ + P   T+   + +C+ L D  
Sbjct: 191 AIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD-- 248

Query: 149 SGEKIHAQV--VKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNS 203
            G  +H+ +    LGFD      +AL+  Y KC   +G +   K M  R+  DL S WN+
Sbjct: 249 -GTWLHSLLHEASLGFDPL--ASNALINMYGKCGDWEGAYSVFKAMASRQELDLVS-WNA 304

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG--RIVHCVAVV 261
           +IS +V+ G+   +  +F+ +R+EG   +S TLI +L + +    ++ G  R  H     
Sbjct: 305 MISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNA-LAASGVDFGAARGFHGRIWE 363

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLE 320
           S + +D+ +  A++SMY+K      A  +F ++  K D + WN M+ A        + + 
Sbjct: 364 SGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVN 423

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY-QVSVHNSLIDMY 379
               M+ +G   +  + IA +++ S  + +++G+++H+ +L    DY + SV   L+ MY
Sbjct: 424 TFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMY 483

Query: 380 CECEDLNCARKIFDS--VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            +C  ++ A  +F    + ++++V+W+ M+  Y  +D+S EA     EM   GV  D ++
Sbjct: 484 GKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALS 543

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
             ++L +C      +  + L    ++ G  S + + TA+   + +C  +E A  +F+E  
Sbjct: 544 FTSVLSSCY---CSQEAQVLRMCILESGYRS-ACLETALISMHGRCRELEQARSVFNE-- 597

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +D  D+++W +M+SA A++ D+ +   L+ +M+   V PD  T    L  C+ +  +  G
Sbjct: 598 MDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLG 657

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           ++I   + E  G E       +++N+    G   EA    + M  +
Sbjct: 658 KVIHACVTE-IGLEADIAVENALLNMYSNCGDWREALSFFETMKAR 702



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 240/499 (48%), Gaps = 28/499 (5%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +++SC    D   G+  H  +   G +    +G+ L+  Y++C G  E    +  + 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRC-GSLEEAHAIFSKM 86

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELG 252
            +     W +LIS   Q G   ++F LF+ M +E  A  +S TL+ +L +    + L +G
Sbjct: 87  EERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG 146

Query: 253 RIVHCVAVVSDFCKDLS------VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           R +H  A++ +   + +      V  A+++MY+K  SLEDA  +F  + +KD V W  M 
Sbjct: 147 RSIH--AMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMA 204

Query: 307 SAYYQS-GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
            AY Q   F  ++L +   M+      ++ T I A+ + +++++  W   +H+ +     
Sbjct: 205 GAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGTW---LHSLLHEASL 261

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT---VVSWSSMIKGYVTHDQSLEALRL 422
            +     N+LI+MY +C D   A  +F ++ ++    +VSW++MI   V   +  +A+ +
Sbjct: 262 GFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 423 FSEMKLEGVEVDFVTIINILPAC----VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           F  ++LEG+  + VT+I IL A     V+ GA    +  HG   + G      +  AI  
Sbjct: 322 FRRLRLEGMRPNSVTLITILNALAASGVDFGA---ARGFHGRIWESGYLRDVVIGNAIIS 378

Query: 479 SYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
            YAKCG    A  +F   +I  K D+I+WN+M+ A      + +    +  M  + + P+
Sbjct: 379 MYAKCGFFSAAWAVF--RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPN 436

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ++F+ +L AC N+  ++ GR I   +               +V++ G+ G + EA  + 
Sbjct: 437 KVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVF 496

Query: 598 KDMPFKPDARV-WGPLLSA 615
           K+MP    + V W  +L A
Sbjct: 497 KEMPLPSRSLVTWNVMLGA 515



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 161/348 (46%), Gaps = 21/348 (6%)

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           VR    ADL    A + S     ++  GK  H  +   G +  + + N LI+MY  C  L
Sbjct: 17  VRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSL 76

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV-DFVTIINILPA 444
             A  IF  ++ + VVSW+++I           A  LF  M LE     +  T++ +L A
Sbjct: 77  EEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNA 136

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSS----VNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           C N   L   + +H    +LGL   S+    V  A+   YAKCG +E A  +F    I  
Sbjct: 137 CANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVF--LAIPE 194

Query: 501 KDIITWNSMISAYAKHGD-WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           KD+++W +M  AYA+    +    +++ +M    + P++ITF+  L AC +   + +G  
Sbjct: 195 KDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTW 251

Query: 560 IFKEMKE-SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP--DARVWGPLLSA- 615
           +   + E S G++P   +  +++N+ G+ G  + A  + K M  +   D   W  ++SA 
Sbjct: 252 LHSLLHEASLGFDPLASN--ALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISAS 309

Query: 616 --CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
                H +  +A     +L  M P N+   + + N  AA+G   G A+
Sbjct: 310 VEAGRHGDA-MAIFRRLRLEGMRP-NSVTLITILNALAASGVDFGAAR 355


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 204/679 (30%), Positives = 357/679 (52%), Gaps = 22/679 (3%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSS--NLID 73
           +++L F  N ++      H  + L+ C +  HL ++H R +  H    + +      L+ 
Sbjct: 1   MRYLYFHGNASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLA 60

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           S A    +  +++VF+ +  PN+ ++  +++  S        L V+++M  + + P  D 
Sbjct: 61  SPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSP--DN 118

Query: 134 YPFVIRSCSCL----LDFIS-GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           Y       +      L + S G+ IHA V ++GF S   V   LV +Y    G F + + 
Sbjct: 119 YTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYY----GAFRSVE- 173

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
              + F+++  R    W S+IS   Q G  +K  ++   M+ EG   +  T+I+LL +  
Sbjct: 174 EASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACG 233

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           + ++++ GR V+          D+ +  AL+SMY+K   L DA   F  M  +    WN 
Sbjct: 234 QTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNT 293

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I  + Q+   KE+L +   M+  G   D  T ++ +S+ + +  +  G  +H+ +  NG
Sbjct: 294 LIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNG 353

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                 + NSLI+MY +C D+  A ++F ++  K VVSW+ M+ GYV   Q   A  LF 
Sbjct: 354 ICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFE 413

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EMK+  V    + ++++L AC  +GAL+  + +H Y  ++ +     + +A+   YAKCG
Sbjct: 414 EMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCG 473

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ-SDVRPDLITFLG 543
           CI+ A E+F   K+  K  ++WN+MI   A +G   +  +L+ QM +  D +PD IT   
Sbjct: 474 CIDTASEIF--RKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKA 531

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +L AC + G+V+EG   F  M  S G  P  EHY  +V+LLGRAG +DEA   +K MP +
Sbjct: 532 VLGACAHVGMVDEGLRYFYLMS-SLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIE 590

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           P+  +WG LL+AC++H   +L ++  + ++++ P + G +VL+SN++A   +W+ V  +R
Sbjct: 591 PNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVR 650

Query: 664 TFLRDRGLKKTPGCSWIEI 682
             +  RG++KTPG S +++
Sbjct: 651 GLMGSRGIEKTPGHSSVQV 669


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 304/541 (56%), Gaps = 59/541 (10%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS++S   Q+ + E+S E F  M  E    +  +  + L +   L  L +G  VH +  
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S +  D+ + +AL+ MYSK  S+  A+ +F  M +++ V WN +I+ Y Q+G   E+LE
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMY 379
           + + M+ SG   D  T  + VS+ +++  ++ G Q+HA V++ N     + + N+L+DMY
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY 294

Query: 380 CECEDLNCARKIFD---------------------SVKT----------KTVVSWSSMIK 408
            +C  +N AR++FD                     SVK           + VVSW+++I 
Sbjct: 295 AKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY  + ++ EALRLF  +K E +     T  N+L + + +G                 NS
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVG-----------------NS 397

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
           L  +       Y KCG IE    +F  EK+  +D ++WN++I  YA++G  ++  +++ +
Sbjct: 398 LIDM-------YMKCGSIEDGSRVF--EKMKERDCVSWNAIIVGYAQNGYGAEALQIFRK 448

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M     +PD +T +G+L AC +AGLVEEGR  F  M+E +G  P ++HY  MV+LLGRAG
Sbjct: 449 MLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAG 507

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            ++EA+ L++ MP  PDA VWG LL+ACK+H   E+ +  AEKL+ ++P N+G YVLLSN
Sbjct: 508 CLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSN 567

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YA  G+W  V ++R  +R +G+ K PGCSWIE+   VH F   D+SHP    IY++L +
Sbjct: 568 MYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKM 627

Query: 709 L 709
           L
Sbjct: 628 L 628



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 233/501 (46%), Gaps = 64/501 (12%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +      +N    ++LI      G L  + ++F S+  P+   + +++   ++   +
Sbjct: 69  ARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRF 128

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           E++L  + +M  +     E ++   + +C+ L+D   G ++HA V K  + +   +G AL
Sbjct: 129 EESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSAL 188

Query: 173 VEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           ++ Y KC      E+   GMI+R        WNSLI+   QNG + ++ E+F  M   G 
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNL----VTWNSLITCYEQNGPASEALEVFVRMMDSGL 244

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSKL------- 281
           E D  TL +++ +   L +L+ G  +H   V ++ F  DL +  AL+ MY+K        
Sbjct: 245 EPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEAR 304

Query: 282 ------------------------ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
                                   AS++ A+ +F KM+ ++ V WN +I+ Y Q+G  +E
Sbjct: 305 RVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEE 364

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +L L   + R       +T                      N+L++     + V NSLID
Sbjct: 365 ALRLFRLLKRESIWPTHYT--------------------FGNLLKS----DIFVGNSLID 400

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY +C  +    ++F+ +K +  VSW+++I GY  +    EAL++F +M + G + D VT
Sbjct: 401 MYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVT 460

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           +I +L AC + G +E  ++      + GL  L    T +     + GC+  A  L +   
Sbjct: 461 MIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMP 520

Query: 498 IDSKDIITWNSMISAYAKHGD 518
           ++  D + W S+++A   HG+
Sbjct: 521 VNP-DAVVWGSLLAACKVHGN 540



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 33/281 (11%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD--------------SVKTKT 399
           + +HA +L      ++ + N LID+Y +C+ L+ ARK+FD              SV TK+
Sbjct: 35  RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 400 -----------------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
                              SW+SM+ G+  HD+  E+L  F +M  E   ++  +  + L
Sbjct: 95  GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  +  L     +H    K   ++   + +A+   Y+KCG +  A E+F    +  ++
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF--SGMIERN 212

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           ++TWNS+I+ Y ++G  S+  +++ +M  S + PD +T   +++AC +   ++EG  I  
Sbjct: 213 LVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHA 272

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
            + ++  +        ++V++  +   ++EAR +   M  +
Sbjct: 273 RVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 130/301 (43%), Gaps = 77/301 (25%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-------------------- 89
           QIHAR +  +    +L+L + L+D YA    ++ +++VF+                    
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 90  -----------SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
                       +T  N + +  ++   ++ GE E+ L +++ +  +S++P   T+  ++
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL 388

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           +S                      D F  VG++L++ Y+KC G  E+      R F+ +K
Sbjct: 389 KS----------------------DIF--VGNSLIDMYMKC-GSIEDG----SRVFEKMK 419

Query: 199 SR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
            R    WN++I    QNG   ++ ++F+ M + G + D  T+I +L +      +E GR 
Sbjct: 420 ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRH 479

Query: 255 V------HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMIS 307
                  H +  + D        T ++ +  +   L +AK L + M  + D VVW  +++
Sbjct: 480 YFFSMEEHGLIPLKDH------YTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 533

Query: 308 A 308
           A
Sbjct: 534 A 534



 Score = 43.1 bits (100), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L +C+   +    + +H   +    +    +   +   Y KC C++ A +LFD  ++  
Sbjct: 21  LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFD--RMPQ 78

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           ++  TWNS+IS   K G   +  +L+  M + D
Sbjct: 79  RNTFTWNSLISVLTKSGFLDEAARLFGSMPEPD 111


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 208/664 (31%), Positives = 369/664 (55%), Gaps = 22/664 (3%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSI-TSPNSLLYGTILKN-LSKFGEYEKTLLV 118
           L  + +++++L+  Y+    ++ ++ VF+ +      L+  T + + LS+ G   + L +
Sbjct: 80  LETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRL 139

Query: 119 YKQMALQSMYPAEDTYPFVIRSC-SCLLDFISGEKIHAQVVKLGFDSFD-DVGDALVEFY 176
           + +   + + P   T     ++C +  L  ++G  +   V KLGF   D  VG AL++ +
Sbjct: 140 FGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMF 199

Query: 177 IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
            K +G     + +    F+     W  LI+   Q+G S+++ ELF  M   G + D  TL
Sbjct: 200 AK-NGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTL 258

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL---ASLEDAKMLFDK 293
            ++L +  EL S  LG+ +H +A+      D  V+  L+ MY+K     SL +A+ +F++
Sbjct: 259 SSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNR 318

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMC-MVRSGFRADLFTAIAAVSSISTMKNIEW 352
           M   + + W  ++S Y Q G     + +L C M+  G R +  T  + + + + + + + 
Sbjct: 319 MPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDS 378

Query: 353 GKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           G+Q+H + ++ N +D  V V N+L+ MY E   +  AR  FD +  K +VS+S  + G  
Sbjct: 379 GRQIHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDG 437

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTII--NILPACVNIGALEHVKYLHGYSMKLGLNSL 469
             +        + + ++E +E+   T    +++ A  ++G L   + LH  S+K G  S 
Sbjct: 438 RSNT-------YQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSD 490

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
            ++  ++   Y++CG +  A ++FDE  ++  ++I+W SMIS  AKHG  ++  +L+  M
Sbjct: 491 RAIGNSLVSMYSRCGYLVDACQVFDE--MNDHNVISWTSMISGLAKHGYAARALELFHDM 548

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
             + V+P+ +T++ +L+AC +AGLV+EG+  F+ M++ +G  P  EHYA MV+LLGR+G 
Sbjct: 549 IAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGL 608

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           +++A + + +MP + DA VW  LL ACK H+  ++ E+ A  +I +EP++   YVLLSN+
Sbjct: 609 VEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNL 668

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA AG W+ VA++R+ +RD+ L K  G SW+ +   +HEF A D SHPQA+ IYT L  L
Sbjct: 669 YAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETL 728

Query: 710 ELEI 713
             EI
Sbjct: 729 IREI 732


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 172/441 (39%), Positives = 272/441 (61%), Gaps = 7/441 (1%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MY K   L DA+ +FDKM D++ V W  MISAY  +    ++LE L+ M+R G R +
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
           +FT  + + +   + N+   +Q+H  +++ G D  V V ++LID+Y    +L  A ++FD
Sbjct: 66  MFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            + T  +V WSS+I G+  +    EALRLF  MK  G      T+ ++L AC  +  LE 
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +H + +K   + +  +N A+   Y KCG +E A  +F   ++  KD+I+W++MI+  
Sbjct: 183 GRQVHVHVLKYDQDLI--LNNALLDMYCKCGSLEDANAVF--VRMVEKDVISWSTMIAGL 238

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A++G   +  KL+  MK   ++P+ +T +G+L AC +AGLVEEG   F  MKE +G +P 
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPG 298

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
           +EHY  M++LLGRAG + EA +L+ +M  +PDA  W  LL+AC++H   ++A   A++++
Sbjct: 299 REHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL 358

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            ++P++AG YVLLSNIYA   +WN VA++R  + +RG+KK PGCSWIE+ K +H F   D
Sbjct: 359 RLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGD 418

Query: 694 QSHPQADAIYTILGILELEIM 714
           +SHPQ   I   L  L  ++M
Sbjct: 419 RSHPQIREINIQLNQLIYKLM 439



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 171/317 (53%), Gaps = 7/317 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++IS       ++K+ E   LM  EG   +  T  ++LR+   L +L   R +HC  +
Sbjct: 34  WTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNL---RQLHCCII 90

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D+ V +AL+ +YS+   LE+A  +FD+M   D VVW+ +I+ + Q+    E+L 
Sbjct: 91  KIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALR 150

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M R+GF A   T  + + + + +  +E G+Q+H +VL+   D  + ++N+L+DMYC
Sbjct: 151 LFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQD--LILNNALLDMYC 208

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  L  A  +F  +  K V+SWS+MI G   +  S EAL+LF  MK+ G++ ++VTI+ 
Sbjct: 209 KCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVG 268

Query: 441 ILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC + G +E  + Y H      G++        +     + G +  A +L +E + +
Sbjct: 269 VLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECE 328

Query: 500 SKDIITWNSMISAYAKH 516
             D +TW ++++A   H
Sbjct: 329 P-DAVTWRALLNACRVH 344



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 166/345 (48%), Gaps = 8/345 (2%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           LI+ Y   GLL  +Q VF+ +   N + + T++   S     +K L     M  + + P 
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
             TY  V+R+C  L +     ++H  ++K+G DS   V  AL++ Y +  G  EN   + 
Sbjct: 66  MFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRW-GELENALRVF 121

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
                     W+S+I+   QN   +++  LFK M+  G      TL ++LR+   L  LE
Sbjct: 122 DEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLE 181

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LGR VH   +  D  +DL +N ALL MY K  SLEDA  +F +M +KD + W+ MI+   
Sbjct: 182 LGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG-KQMHANVLRNGSDYQV 369
           Q+G+ KE+L+L   M   G + +  T +  + + S    +E G    H+     G D   
Sbjct: 240 QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGR 299

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
             +  +ID+      L+ A  + + ++ +   V+W +++     H
Sbjct: 300 EHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVH 344



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 145/282 (51%), Gaps = 15/282 (5%)

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N LI+MY +   L+ A+ +FD +  + VVSW++MI  Y     + +AL     M  EGV 
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            +  T  ++L AC     L +++ LH   +K+GL+S   V +A+   Y++ G +E A  +
Sbjct: 64  PNMFTYSSVLRAC---DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           FDE  + + D++ W+S+I+ +A++ D  +  +L+ +MK++       T   +L AC    
Sbjct: 121 FDE--MVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           L+E GR +   + +   Y+       +++++  + G +++A  +   M  K D   W  +
Sbjct: 179 LLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEK-DVISWSTM 234

Query: 613 LS--ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           ++  A   +S+  L    + K++ ++P    NYV +  +  A
Sbjct: 235 IAGLAQNGYSKEALKLFESMKVLGIKP----NYVTIVGVLFA 272



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 145/285 (50%), Gaps = 8/285 (2%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
            RP+M  T+S S+L  C+   +L+Q+H   II  GL  ++ + S LID Y+  G L  + 
Sbjct: 62  VRPNMF-TYS-SVLRACDGLFNLRQLHC-CIIKIGLDSDVFVRSALIDVYSRWGELENAL 118

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +VF+ + + + +++ +I+   ++  + ++ L ++K+M        + T   V+R+C+ L 
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
               G ++H  V+K  +D    + +AL++ Y KC G  E+   +  R  +     W+++I
Sbjct: 179 LLELGRQVHVHVLK--YDQDLILNNALLDMYCKC-GSLEDANAVFVRMVEKDVISWSTMI 235

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDF 264
           +   QNG S+++ +LF+ M++ G + +  T++ +L +      +E G    H +  +   
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGI 295

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
                    ++ +  +   L +A  L ++M  + D V W  +++A
Sbjct: 296 DPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 349/631 (55%), Gaps = 54/631 (8%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           +I  CS L      ++ HA +++ G   F D   A   F I     F + +   ++ F +
Sbjct: 37  LIDRCSSLRQL---KQTHAHMIRTGM--FSDPYSASKLFAIAALSSFASLE-YARKVFDE 90

Query: 197 LKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEF----DSGTLINLLRSTVELKS 248
           +       WN+LI  A  +G  +    ++  + M  +E     +  T   L+++  E+ S
Sbjct: 91  IPQPNSFTWNTLIR-AYASG-PDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSS 148

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L LG+ +H +A+ S    D+ V  +L+  Y     L+ A  +F  + +KD V WN MI+ 
Sbjct: 149 LSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 208

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           + Q G P ++LEL   M     +A   T +  +S+ + ++++E+G+++ + +  N  +  
Sbjct: 209 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVN 268

Query: 369 VSVHNSLIDMYCEC-------------------------------EDLNCARKIFDSVKT 397
           +++ N+++DMY +C                               ED   AR++ +++  
Sbjct: 269 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPK 328

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKY 456
           K +V+W+++I  Y  + +  EAL +F E++L+  ++++ +T+++ L AC  +GALE  ++
Sbjct: 329 KDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRW 388

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +H Y  K G+     V +A+   Y+KCG +E A E+F+   ++ +D+  W++MI   A H
Sbjct: 389 IHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFN--SVEKRDVFVWSAMIGGLAMH 446

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G  S+   ++ +M++++V+P+ +TF  +  AC + GLV+E   +F +M+ SYG  P  +H
Sbjct: 447 GCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKH 506

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA +V++LGR+G++++A + ++ MP  P   VWG LL ACK+H+   LAE+   +L+ +E
Sbjct: 507 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELE 566

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
           P N G +VLLSNIYA +GKW+ V+++R  +R  GLKK PGCS IEI  ++HEF + D +H
Sbjct: 567 PRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 626

Query: 697 PQADAIYTILGILELEIMEGRRESSEELKFS 727
           P ++ +Y  L     E+ME  + +  E + S
Sbjct: 627 PMSEKVYGKLH----EVMEKLKSNGYEPEMS 653



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 269/556 (48%), Gaps = 46/556 (8%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNL--IDSYANLG 79
           P   T  +  + H+ SL++ C + + L+Q HA ++I  G+  +   +S L  I + ++  
Sbjct: 21  PNQPTTNNERSRHTISLIDRCSSLRQLKQTHA-HMIRTGMFSDPYSASKLFAIAALSSFA 79

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM--ALQSMYPAEDTYPFV 137
            L  +++VF+ I  PNS  + T+++  +   +   ++  +  M  +    YP + T+PF+
Sbjct: 80  SLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFL 139

Query: 138 IRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           I++ + +     G+ +H   +K  +G D F  V ++L+  Y  C       K     K K
Sbjct: 140 IKAAAEVSSLSLGQSLHGMAIKSAVGSDVF--VANSLIHCYFSCGDLDSACKVFTTIKEK 197

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           D+ S WNS+I+  VQ G  +K+ ELFK M  E  +    T++ +L +  +++ LE GR V
Sbjct: 198 DVVS-WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-------------- 301
                 +    +L++  A+L MY+K  S+EDAK LFD M +KD V               
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 316

Query: 302 -----------------WNIMISAYYQSGFPKESLELLM-CMVRSGFRADLFTAIAAVSS 343
                            WN +ISAY Q+G P E+L +     ++   + +  T ++ +S+
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + +  +E G+ +H+ + +NG      V ++LI MY +C DL  AR++F+SV+ + V  W
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           S+MI G   H    EA+ +F +M+   V+ + VT  N+  AC + G ++  + L  Y M+
Sbjct: 437 SAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF-YKME 495

Query: 464 --LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
              G+         I     + G +E A +  +   I     + W +++ A   H + S 
Sbjct: 496 SSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV-WGALLGACKIHANLSL 554

Query: 522 CFKLYTQMKQSDVRPD 537
                T++ + + R D
Sbjct: 555 AEMACTRLLELEPRND 570


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 208/590 (35%), Positives = 304/590 (51%), Gaps = 80/590 (13%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE--LGRIVHCV 258
           +N++I+    NG    + ELF+ MR +    D  T  ++L + V     E   G++ HC 
Sbjct: 115 YNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM-HCA 173

Query: 259 AVVSDF-CKDLSVNTALLSMYSKLAS--------LEDAKMLFDKMSDKDRVVW------- 302
            V +   C   SV  ALLS+Y K AS        +  A+ LFD+M  +D + W       
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 303 ------------------------NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
                                   N MIS Y   G  +E+L L   M   G + D  T  
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 339 AAVSSISTMKNIEWGKQMHANVLRN----GSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
             +S+ + + + + GKQ+HA +L+N       + +SV N+LI +YC+   ++ ARKIF +
Sbjct: 294 TIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYA 353

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEA-------------------------------LRLF 423
           +  + +++W++++ GYV   +  EA                               L+LF
Sbjct: 354 MPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLF 413

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +M+L+G E         L AC  +GALE+ + LH   + LG  S  SV  A+   YAKC
Sbjct: 414 KQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKC 473

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +E A  +F    + S D+++WNSMI+A  +HG   +  +L+ QM +  V PD ITFL 
Sbjct: 474 GVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +LTAC +AGLVE+GR  F  M ESYG  P ++HYA MV+L  RAG    AR ++  MP K
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           P A VW  LL+ C++H   +L    AE+L  + P+N G YVLLSNIYA  G+WN VAK+R
Sbjct: 592 PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVR 651

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             +RD+ ++K P CSWIE+   VH F   D  HP+  ++Y  L  L LE+
Sbjct: 652 KLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEM 701



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 143/604 (23%), Positives = 261/604 (43%), Gaps = 123/604 (20%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS--ITSPNSLLYGTILKNLSK 108
           ++AR +     + + I  + LI +Y  LG L L +++FN   +   +S+ Y  ++   + 
Sbjct: 65  VYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAH 124

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE----KIHAQVVKLGFDS 164
            G+    L +++ M      P + T+  V+   S L+ F+  E    ++H  VVK G   
Sbjct: 125 NGDGHSALELFRAMRRDDFRPDDFTFTSVL---SALVLFVGNEQQCGQMHCAVVKTGMGC 181

Query: 165 F-DDVGDALVEFYIK--------CD-------------------------GGFENE---- 186
               V +AL+  Y+K        C                          G   N+    
Sbjct: 182 VSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNG 241

Query: 187 -KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            + + +   ++L + WN++IS  V  G  +++  L + MR  G +FD  T   ++ +   
Sbjct: 242 AREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACAN 301

Query: 246 LKSLELGRIVH--------------CVAV----VSDFCKDLSVN---------------- 271
           + S ++G+ VH              C++V    ++ +CK+  V+                
Sbjct: 302 VGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIIT 361

Query: 272 -TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             A+LS Y     +E+AK  F++M  K+ +   +MIS   Q+GF  E L+L   M   GF
Sbjct: 362 WNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGF 421

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
               F    A+++ S +  +E G+Q+HA ++  G +  +SV N++I MY +C  +  A  
Sbjct: 422 EPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAES 481

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F ++ +  +VSW+SMI     H   ++A+ LF +M  EGV  D +T + +L AC + G 
Sbjct: 482 VFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGL 541

Query: 451 LEHVKY-----LHGYSM-----------------------KLGLNSLSSVNTAIFISYAK 482
           +E  ++     L  Y +                       ++ ++S+ S   A       
Sbjct: 542 VEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALL 601

Query: 483 CGC---------IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            GC         IE A +LF   K+  ++  T+  + + YA  G W++  K+   M+   
Sbjct: 602 AGCRIHGNMDLGIEAAEQLF---KLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQA 658

Query: 534 VRPD 537
           VR +
Sbjct: 659 VRKE 662



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 189/432 (43%), Gaps = 82/432 (18%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFD--KMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
           D    T L++ Y  L +LE  + +F+   +  +D V +N MI+ Y  +G    +LEL   
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 325 MVRSGFRADLFTAIAAVSSIST-MKNIEWGKQMHANVLRNGSD-YQVSVHNSLIDMYCE- 381
           M R  FR D FT  + +S++   + N +   QMH  V++ G      SV N+L+ +Y + 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 382 -------C-------------------------------EDLNCARKIFDSVKTKTVVSW 403
                  C                               +DLN AR++F+++      +W
Sbjct: 198 ASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++MI GYV      EAL L  +M+  G++ D +T   I+ AC N+G+ +  K +H Y +K
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILK 317

Query: 464 LGLNS----LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY------ 513
             LN       SV+ A+   Y K   ++ A ++F    +  ++IITWN+++S Y      
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPV--RNIITWNAILSGYVNAGRM 375

Query: 514 -------------------------AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
                                    A++G   +  KL+ QM+     P    F G LTAC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
              G +E GR +  ++    GYE S     +M+++  + G ++ A  +   MP   D   
Sbjct: 436 SVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVS 493

Query: 609 WGPLLSACKMHS 620
           W  +++A   H 
Sbjct: 494 WNSMIAALGQHG 505



 Score = 43.9 bits (102), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           S+L   EN +   Q+HA+ + L G   +L + + +I  YA  G++  ++ VF ++ S + 
Sbjct: 436 SVLGALENGR---QLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL 491

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + + +++  L + G   K + ++ QM  + ++P   T+  V+ +CS           HA 
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS-----------HAG 540

Query: 157 VVKLGFDSFDDV 168
           +V+ G   F+ +
Sbjct: 541 LVEKGRHYFNSM 552


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 211/679 (31%), Positives = 367/679 (54%), Gaps = 12/679 (1%)

Query: 37   SLLNLCENP-QHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S+L  C    +HL   +++H R II  G+  + ++ ++L+  Y   G LS +++VF+ + 
Sbjct: 663  SVLRACAGSREHLSVGRKVHGR-IIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMP 721

Query: 93   SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
              + + + T++ +  +  E  K L ++K M    + P   T   V+  C+ L        
Sbjct: 722  VRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARS 781

Query: 153  IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
            +H Q+ +  FD  + + ++L+  Y KC     +EK + ++  K     W ++IS   +  
Sbjct: 782  VHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEK-IFEKIAKKNAVSWTAMISSYNRGE 840

Query: 213  KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL-SVN 271
             SEK+   F  M   G E +  TL ++L S      +  G+ VH  A+  +   +  S++
Sbjct: 841  FSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLS 900

Query: 272  TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             AL+ +Y++   L D + +   + D++ V+WN  IS Y   G   E+L L   MV    +
Sbjct: 901  PALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIK 960

Query: 332  ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
             D FT  + +S+      +  GKQ+H +V+R     +  V NS+IDMY +   +N A  +
Sbjct: 961  PDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEF-VQNSVIDMYSKSGFVNLACTV 1019

Query: 392  FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            FD +K +++V+W+SM+ G+  +  SLEA+ LF  M    +E++ VT + ++ AC +IG+L
Sbjct: 1020 FDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSL 1079

Query: 452  EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
            E  +++H   +  G+  L + +TA+   YAKCG +  A  +F    + ++ I++W+SMI+
Sbjct: 1080 EKGRWVHHKLIVCGIKDLFT-DTALIDMYAKCGDLNTAETVF--RAMSNRSIVSWSSMIN 1136

Query: 512  AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            AY  HG        + QM +S  +P+ + F+ +L+AC ++G VEEG+  F  MK  +G  
Sbjct: 1137 AYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMK-LFGVS 1195

Query: 572  PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
            P+ EH+A  ++LL R+G + EA   +K+MPF  DA VWG L++ C++H + ++ +     
Sbjct: 1196 PNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKND 1255

Query: 632  LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
            +  +  ++ G Y LLSNIYA  G+W    +MR+ ++   LKK PG S IEI K V  F A
Sbjct: 1256 ISDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEIDKKVFRFGA 1315

Query: 692  ADQSHPQADAIYTILGILE 710
             +++  Q + IY  LG L+
Sbjct: 1316 GEETCFQTEEIYMFLGNLQ 1334



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 167/649 (25%), Positives = 322/649 (49%), Gaps = 29/649 (4%)

Query: 29   HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
            ++  T    L   C + + + Q+HA  ++   L ++ +  + LI+SYA +G    S+ VF
Sbjct: 556  YLKMTQYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVF 615

Query: 89   NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
             +   P+S +YG ++K        +  + +Y ++  +    ++  +P V+R+C+   + +
Sbjct: 616  EAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHL 675

Query: 149  S-GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
            S G K+H +++K G D      DA++E  + C  G        ++ F  +  R    W++
Sbjct: 676  SVGRKVHGRIIKSGVDD-----DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWST 730

Query: 204  LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
            L+S  ++N +  K+  +FK M  +G E D+ T+I+++    EL  L + R VH       
Sbjct: 731  LVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKM 790

Query: 264  FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
            F  D ++  +LL+MYSK   L  ++ +F+K++ K+ V W  MIS+Y +  F +++L    
Sbjct: 791  FDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFS 850

Query: 324  CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV-SVHNSLIDMYCEC 382
             M++SG   +L T  + +SS      I  GK +H   +R   D    S+  +L+++Y EC
Sbjct: 851  EMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAEC 910

Query: 383  EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
              L     I   V  + +V W+S I  Y      +EAL LF +M    ++ D  T+ +I+
Sbjct: 911  GRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASII 970

Query: 443  PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
             AC N G +   K +HG+ ++  + S   V  ++   Y+K G + +A  +FD+  I  + 
Sbjct: 971  SACENTGLVRLGKQIHGHVIRTDV-SDEFVQNSVIDMYSKSGFVNLACTVFDQ--IKHRS 1027

Query: 503  IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR---- 558
            I+TWNSM+  ++++G+  +   L+  M  S +  + +TFL ++ AC + G +E+GR    
Sbjct: 1028 IVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHH 1087

Query: 559  -IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
             +I   +K+ +          +++++  + G ++ A  + + M  +     W  +++A  
Sbjct: 1088 KLIVCGIKDLFT-------DTALIDMYAKCGDLNTAETVFRAMSNRSIVS-WSSMINAYG 1139

Query: 618  MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            MH     A  T  +++  E     N V+  N+ +A G    V + + + 
Sbjct: 1140 MHGRIGSAISTFNQMV--ESGTKPNEVVFMNVLSACGHSGSVEEGKYYF 1186


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 203/660 (30%), Positives = 349/660 (52%), Gaps = 17/660 (2%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSS-----NLIDSYANLGLLSLS 84
           ++A     LL  C     L+ +HAR ++ H   Q L+L S      L+  YA LG L+ +
Sbjct: 27  LSAGDLLRLLPSCGTLPSLRVLHAR-LLTH--TQGLLLGSLRARTKLLSCYAALGDLASA 83

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP-AEDTY--PFVIRSC 141
           + VF+    P++  YG +L  L +   + + + +++ M  +   P A+D +     +++C
Sbjct: 84  RMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKAC 143

Query: 142 SCLLDFISGEKIHAQVVKLG-FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
               D+  G ++H   VK+G  D F  V ++LV+ Y K  G  E  + + +R        
Sbjct: 144 IRSADYGYGTRLHCDAVKVGGADGF--VMNSLVDMYAKA-GDLECARKVFERIPGRNVVS 200

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W S++S  VQNG +     LF  MR +       T+  ++ +   L  L  GR +H   +
Sbjct: 201 WTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVI 260

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 +  ++ ALL MY K   LEDA+ +FD++S  D V+W  MI  Y Q+G P ++L 
Sbjct: 261 KQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALR 320

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L +    +    +  T    +S+ + ++++  G+ +H   ++ G      V N+L+DMY 
Sbjct: 321 LFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYA 380

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C+ ++ A +IF S+  K VV+W+SM+ GY  ++   +AL LF +M L+G   D +++++
Sbjct: 381 KCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVH 440

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            L A V +G L   K  HGY++K    S   V+TA+   Y KCG +  A  +FDE  ++ 
Sbjct: 441 ALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDE--MND 498

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           ++ +TW +MI  Y   GD +    L+ +M +  V P+ + F  +L+ C + G+V   +  
Sbjct: 499 RNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRY 558

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M + +   PS +HYA MV++L RAG+++EA E + +MP + D  VWG  L  C++HS
Sbjct: 559 FDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHS 618

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             +  E   ++++ + PE    YVL+SN+Y + G W     +R +++++GL K PG S I
Sbjct: 619 RLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWMQEKGLVKLPGYSSI 678


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 312/564 (55%), Gaps = 42/564 (7%)

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTV 244
           +QR F  + +     WNSL+S    NG   +S  ++ +M  +G+   +  T   +L  + 
Sbjct: 90  MQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSS 149

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA----------------- 287
               ++LGR +H       +   L V + L+ MY+K   + DA                 
Sbjct: 150 NRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNT 209

Query: 288 --------------KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
                         + LFD M +KD + W  +I+   Q+G  KE+++    M   GF  D
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMD 269

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCARKI 391
            FT  + +++      ++ GKQ+HA ++R  +DYQ  + V ++L+DMYC+C ++  A  +
Sbjct: 270 QFTFGSVLTACGGFLALDEGKQIHAYIIR--TDYQDNIFVGSALLDMYCKCRNVKYAEAV 327

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  ++ K V+SW++M+ GY  +  S EA+R+F +M+   +  D  T+ +++ +C N+ +L
Sbjct: 328 FRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASL 387

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E     HG ++  GL    +V+ A+   Y KCG +E A +LF E KI  +D ++W +++S
Sbjct: 388 EEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI--RDEVSWTALVS 445

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+ G  ++   L+  M    + PD +TF+G+L+AC  AGLVE+G   F+ M + +   
Sbjct: 446 GYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRIT 505

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P  +HY  M++LL RAG ++EA+  +  MPF PDA  W  LLS+C+++   E+ +  AE 
Sbjct: 506 PIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAES 565

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  +EP+N  +Y+LLS+IYAA GKW+ VAK+R  +R+ G+KK PG SWI+    VH F A
Sbjct: 566 LHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSA 625

Query: 692 ADQSHPQADAIYTILGILELEIME 715
            D+S P +D IY  L  L L+++E
Sbjct: 626 DDRSSPFSDQIYAKLESLYLKMIE 649



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 141/546 (25%), Positives = 253/546 (46%), Gaps = 75/546 (13%)

Query: 42  CE--NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLY 99
           CE  N   ++++H R II    +    L +NLI++Y  LG L  ++ VF+ I  PN   +
Sbjct: 16  CEARNRAQVKKLHCR-IIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSW 74

Query: 100 GTILKNLSKFGEYEKTLLVYKQM---------ALQSMYPAED-------TYPFVIRSCSC 143
            T+L   SK G  +    V+  M         +L S Y            Y  +++  S 
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 144 LLDFIS----------------GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            L+ I+                G +IH Q+ K G+ S+  VG  LV+ Y K   GF N+ 
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKT--GFINDA 192

Query: 188 GMI----------------------------QRKFKDLKSR----WNSLISLAVQNGKSE 215
             I                            ++ F ++  +    W ++I+   QNG  +
Sbjct: 193 NRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFK 252

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ + FK M +EG   D  T  ++L +     +L+ G+ +H   + +D+  ++ V +ALL
Sbjct: 253 EAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALL 312

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY K  +++ A+ +F KM  K+ + W  M+  Y Q+G+ +E++ +   M R+    D F
Sbjct: 313 DMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDF 372

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T  + +SS + + ++E G Q H   L +G    V+V N+LI +Y +C  L  A ++F  +
Sbjct: 373 TLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEM 432

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           K +  VSW++++ GY    ++ E + LF  M   G+  D VT + +L AC   G +E  K
Sbjct: 433 KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVE--K 490

Query: 456 YLHGYSMKLGLNSLSSVN---TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             H +   +  + ++ +    T +    ++ G +E A    ++    S D I W +++S+
Sbjct: 491 GYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPF-SPDAIGWATLLSS 549

Query: 513 YAKHGD 518
              +G+
Sbjct: 550 CRLNGN 555



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 39/290 (13%)

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR--------- 389
           AA+      +N    K++H  ++R  ++ +  ++N+LI+ Y +  DL  AR         
Sbjct: 10  AALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQP 69

Query: 390 ----------------------KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
                                 ++FDS+    VVSW+S++ GY  +    E++R+++ M 
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 428 LEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
            +G V ++ +T   +L    N G ++  + +HG   K G  S   V + +   YAK G I
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
             A  +F+E  I  K+I+ +N+MI+   +     +  +L+  M + D     I++  ++T
Sbjct: 190 NDANRIFEE--IPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDS----ISWTTIIT 243

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
                GL +E    FKEM    G+   Q  + S++   G    +DE +++
Sbjct: 244 GLTQNGLFKEAVDKFKEMGIE-GFCMDQFTFGSVLTACGGFLALDEGKQI 292


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/674 (29%), Positives = 365/674 (54%), Gaps = 13/674 (1%)

Query: 34  HSF-SLLNLCENPQ---HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           H+F SL+  C +     H    H R +I+ G   +  ++++LI+ Y+  G    +++VF+
Sbjct: 49  HTFPSLVKACTSLDLFSHGLSFHQR-VIVDGYSSDSYIATSLINFYSKFGHNQSARKVFD 107

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           ++   N + + T++   ++ GE++    +Y  M  Q + P+  T   ++   S +L+ + 
Sbjct: 108 TMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL---SGVLELVH 164

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLA 208
            + +HA V++ GF S   + ++++  Y KC G  E+ + + +    +D+ S WNSL+S  
Sbjct: 165 LQCLHACVIQYGFGSDVALANSMLNVYCKC-GRVEDAQALFELMDARDVIS-WNSLVSGY 222

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            Q G   +  +L   M+ +G E D  T  +L+ +      L +G++VH   + +   +D 
Sbjct: 223 AQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDS 282

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + T+L+ MY K  ++  A  +F+ M  KD + W  MIS   Q+     ++ +   M++S
Sbjct: 283 HIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKS 342

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
                  T  + +++ + + +   G  +H  +LR      +   NSL+ MY +C  L  +
Sbjct: 343 RVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQS 402

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             +FD +  + +VSW++++ G+  +    +AL LF+EM+      D +T++++L AC +I
Sbjct: 403 CSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASI 462

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           GAL   K++H +  K  L     ++TA+   Y+KCG +  A + FD  ++  +D+++W+S
Sbjct: 463 GALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFD--RMPQQDLVSWSS 520

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +I+ Y  HG      ++Y+    + ++P+ + +L +L+AC + GLV++G   F  M + +
Sbjct: 521 IIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDF 580

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G EP  EH A +V+LL RAG ++EA    K M  KP   V G LL AC+     EL ++ 
Sbjct: 581 GIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIV 640

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           A +++ ++P NAGNYV L++ YA+  +W+GV ++ T ++   LKK PG S+IE+   +  
Sbjct: 641 AREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITT 700

Query: 689 FWAADQSHPQADAI 702
           F+    SHPQ + I
Sbjct: 701 FFTDHSSHPQFEEI 714



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 278/540 (51%), Gaps = 16/540 (2%)

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           S  +P +  Y  I+  LS  G +   LL Y  M      P   T+P ++++C+ L  F  
Sbjct: 7   SFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSH 66

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLI 205
           G   H +V+  G+ S   +  +L+ FY K    F + +   ++ F  +  R    W ++I
Sbjct: 67  GLSFHQRVIVDGYSSDSYIATSLINFYSK----FGHNQSA-RKVFDTMDDRNVVPWTTMI 121

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
               + G+ + +F ++ +MR +G +  S T++ LL   +EL  L+    +H   +   F 
Sbjct: 122 GCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ---CLHACVIQYGFG 178

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            D+++  ++L++Y K   +EDA+ LF+ M  +D + WN ++S Y Q G  +E L+LL+ M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G   D  T  + VS+ +    +  GK +H ++LR G +    +  SLI MY +C ++
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNV 298

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           N A +IF+ +  K V+SW++MI G V +D +  A+ +F  M    V     TI ++L AC
Sbjct: 299 NSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAAC 358

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             +G+      +HGY ++  +        ++   YAKCG +E +  +FD  ++  +DI++
Sbjct: 359 AELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFD--RMSRRDIVS 416

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN+++S +A++G   +   L+ +M+++  RPD IT + LL AC + G + +G+ I   + 
Sbjct: 417 WNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVT 476

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +S    P      ++V++  + G +  A++    MP + D   W  +++    H + E A
Sbjct: 477 KSC-LGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETA 534


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 211/683 (30%), Positives = 362/683 (53%), Gaps = 43/683 (6%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y++  GL   + ++S+L D Y   G+L  +++VF
Sbjct: 173 NFVVPNVCKACGALQWSRFGRGVHG-YVVKAGLEDCVFVASSLADMYGKCGVLDDARKVF 231

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N + +  ++    + G  E+ + ++  M  + + P   T    + + + +    
Sbjct: 232 DEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVE 291

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  +  G +  + +G +L+ FY K  G  E  + +  R        WN +IS  
Sbjct: 292 EGKQSHAIAIVNGLELDNILGTSLLNFYCKV-GLIEYAEMVFDRMIDKDVVTWNLIISGY 350

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  E +  + +LMR+E  ++D  TL  L+ +    ++L+LG+ V C  +   F  D+
Sbjct: 351 VQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESDI 410

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + + ++ MY+K  S+ DAK +FD  ++KD ++WN +++AY +SG   E L L   M   
Sbjct: 411 VLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQLE 470

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   ++ T    + S+                LRNG   +        DM+ + +    +
Sbjct: 471 GVPPNVITWNLIILSL----------------LRNGEVDEAK------DMFLQMQ----S 504

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             IF ++     +SW++M+ G V +  S EA+    +M+  G+  + V+I   L AC N+
Sbjct: 505 SGIFPNL-----ISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSACANL 559

Query: 449 GALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            +L   + +HGY ++ L  +S  S+ T++   YAKCG I  A ++F  +     ++  +N
Sbjct: 560 ASLHFGRSIHGYIIRNLQHSSSVSIETSLVDMYAKCGDINKAEKVFGSKLY--SELPLYN 617

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +MISAYA +G+  +   LY  ++   ++PD IT   +L+AC +AG   +   I  EM   
Sbjct: 618 AMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDNNQATEIVTEMVSK 677

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +G  P  EHY  MV+LL  AG  D+A  L+++MP+KPDAR+   L+++C    ++EL + 
Sbjct: 678 HGMNPCLEHYGLMVDLLASAGQTDKALRLIEEMPYKPDARMIQSLVASCNKQPKSELVDY 737

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI-GKLV 686
            + +LI  EP+N+GNYV +SN YA  G W+ V KMR  ++ +GLKK PGCSWI+I G+ V
Sbjct: 738 LSRQLIESEPDNSGNYVTISNAYAVEGSWDEVVKMREIMKAKGLKKKPGCSWIQIKGEGV 797

Query: 687 HEFWAADQSHPQADAIYTILGIL 709
           H F A D++H + + I  IL +L
Sbjct: 798 HVFVANDKTHIRINEIQRILALL 820



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 147/539 (27%), Positives = 275/539 (51%), Gaps = 11/539 (2%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           S+Q  +   +P+S  Y   + +L K GE ++ L +  +M  +++    + Y  +++ C  
Sbjct: 23  SKQHDDQALNPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVY 82

Query: 144 LLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
             D  +G++IHA+++K G  +   + +   LV FY KCD     E    + + +++ S W
Sbjct: 83  ERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRVRNVFS-W 141

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAV 260
            ++I +  + G  E +   F  M +E   F D+  + N+ ++   L+    GR VH   V
Sbjct: 142 AAIIGVKCRIGLCEGALMGFVEM-LENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVV 200

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +     + V ++L  MY K   L+DA+ +FD++ +++ V WN ++  Y Q+G  +E++ 
Sbjct: 201 KAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIR 260

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M + G      T    +S+ + M  +E GKQ HA  + NG +    +  SL++ YC
Sbjct: 261 LFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYC 320

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   +  A  +FD +  K VV+W+ +I GYV       A+ +   M+LE ++ D VT+  
Sbjct: 321 KVGLIEYAEMVFDRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLAT 380

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           ++ A      L+  K +  Y ++    S   + + +   YAKCG I  A ++FD      
Sbjct: 381 LMSAAARTQNLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTA--E 438

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD+I WN++++AYA+ G   +  +L+  M+   V P++IT+  ++ + +  G V+E + +
Sbjct: 439 KDLILWNTLLAAYAESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDM 498

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
           F +M+ S G  P+   + +M+N + + G  +EA   ++ M     +P+A      LSAC
Sbjct: 499 FLQMQSS-GIFPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAVSITVALSAC 556


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/540 (36%), Positives = 297/540 (55%), Gaps = 41/540 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++S   QNG  +++ E+F  M  +    +S +   +L + V+   +E  R +     
Sbjct: 64  WNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRL--FES 117

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +D+  +L     ++  Y K   L DA+ +FD+M ++D V WN MIS Y Q+G   E LE
Sbjct: 118 KADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG---ELLE 172

Query: 321 LLMCMVRSGFRADLFTAIAAVSS----------------ISTMKNIEWGKQMHANVLRNG 364
                  S  R D+FT  A VS                 +    ++ W   +   V    
Sbjct: 173 AQRLFEESPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKR 231

Query: 365 SDY-----------QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            D             VS  N++I  Y +  D+  AR  FD +  +  +SW+++I GY   
Sbjct: 232 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 291

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               EAL LF EMK +G  ++  T  + L  C  I ALE  K +HG  +K GL S   V 
Sbjct: 292 GYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 351

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            A+ + Y KCG I+ A  +F  E I+ K++++WN+MI+ YA+HG   +   L+  MK++ 
Sbjct: 352 NALLVMYCKCGNIDDAYIVF--EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTG 409

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + PD +T +G+L+AC + GLV++G   F  M + YG   + +HY  M++LLGRAG +D+A
Sbjct: 410 ILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDA 469

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
           + L+K+MPF+PDA  WG LL A ++H  TEL E  A+ +  MEP+N+G YVLLSN+YAA+
Sbjct: 470 QNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAAS 529

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           G+W  V +MR  +RDRG+KK PG SW+E+   +H F   D  HP+ D IYT L  L+L++
Sbjct: 530 GRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKM 589



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 146/299 (48%), Gaps = 48/299 (16%)

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           +  +L  A++LFD+M ++D V WN M+S Y Q+G+ KE+ E             +F  + 
Sbjct: 42  RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKE-------------IFDEMP 88

Query: 340 AVSSISTMKNIEWGKQMHANVLRNG------------SDYQVSVHNSLIDMYCECEDLNC 387
             +SIS      W   + A V +NG            +D+++   N ++  Y +   L  
Sbjct: 89  CKNSIS------WNGMLAAYV-QNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVD 141

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           AR IFD +  +  VSW++MI GY  + + LEA RLF E  +     D  T   ++   V 
Sbjct: 142 ARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQ 197

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVN-TAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            G L+  + +       G+   +SV+  AI   Y +C  ++ A ELF  E +  +++ +W
Sbjct: 198 NGMLDEARRVFD-----GMPEKNSVSWNAIIAGYVQCKRMDQARELF--EAMPCQNVSSW 250

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           N+MI+ YA++GD +Q    + +M Q D     I++  ++     +G  EE   +F EMK
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDS----ISWAAIIAGYAQSGYGEEALHLFVEMK 305



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 120/251 (47%), Gaps = 9/251 (3%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           QN+   + +I  YA  G ++ ++  F+ +   +S+ +  I+   ++ G  E+ L ++ +M
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                     T+   + +C+ +     G+++H +VVK G +S   VG+AL+  Y KC G 
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC-GN 363

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            ++   + +   +     WN++I+   ++G  +++  LF+ M+  G   D  T++ +L +
Sbjct: 364 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 423

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVN----TALLSMYSKLASLEDAKMLFDKMS-DK 297
                 ++ G   +  ++  D+   ++ N    T ++ +  +   L+DA+ L   M  + 
Sbjct: 424 CSHTGLVDKG-TEYFYSMTQDY--GITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP 480

Query: 298 DRVVWNIMISA 308
           D   W  ++ A
Sbjct: 481 DAATWGALLGA 491


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 303/548 (55%), Gaps = 47/548 (8%)

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           KD+ S WN+++S   QNG  E++ ++F  M ++     +G    LL + V+   +E  R 
Sbjct: 151 KDVVS-WNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG----LLSAYVQNGRIEDARR 205

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +      S    ++     L+  Y +   L+DA+ LFD+M  +D++ WNIMI+ Y Q+G 
Sbjct: 206 L----FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGL 261

Query: 315 PKESLELL-----------MCMVRSGFRAD--LFTAIAAVSSISTMKNIEWGKQMHANVL 361
             E+  L              MV SGF  +  L  A      +     + W   +   V 
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMV-SGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQ 320

Query: 362 ----------------RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
                           RN S +     N+++  Y +C +++ A+ +FD +  +  +SW++
Sbjct: 321 SQQIEKARELFDQMPSRNTSSW-----NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI GY    QS EAL LF +MK +G  ++   +   L +C  I ALE  K LHG  +K G
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             +      A+   Y KCG IE A ++F  E I  KDI++WN+MI+ YA+HG   +   L
Sbjct: 436 FQTGYIAGNALLAMYGKCGSIEEAFDVF--EDITEKDIVSWNTMIAGYARHGFGKEALAL 493

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  MK + ++PD +T +G+L+AC + GLV++G   F  M ++YG   + +HY  M++LLG
Sbjct: 494 FESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLG 552

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +DEA  L+K MPF PDA  WG LL A ++H +TEL E  AEK+  MEP+N+G YVL
Sbjct: 553 RAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVL 612

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSN+YAA+G+W  V +MR+ +RD+G+KK PG SW+EI    H F   D SHP+A+ IY  
Sbjct: 613 LSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAY 672

Query: 706 LGILELEI 713
           L  L+LE+
Sbjct: 673 LEELDLEL 680



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 204/453 (45%), Gaps = 63/453 (13%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--- 256
           +WN  IS  ++ G+ E +  +F  MR               RSTV   ++  G + +   
Sbjct: 62  KWNRKISAYMRKGQCESALSVFNGMRR--------------RSTVTYNAMISGYLSNNKF 107

Query: 257 -CVAVVSDFC--KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            C   V +    +DL     +LS Y K  +L  A+ LF++M +KD V WN M+S + Q+G
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
           F +E+ ++   M+      +  +    +S+      IE  +++  + +    D+++   N
Sbjct: 168 FVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKM----DWEIVSWN 219

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-- 431
            L+  Y   + L+ AR +FD +  +  +SW+ MI GY  +    EA RLF E+ +  V  
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA 279

Query: 432 -------------------------EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
                                    E + V+   ++   V    +E  + L     ++  
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFD---QMPS 336

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            + SS NT +   YA+CG I+ A  LFDE  +  +D I+W +MIS YA+ G   +   L+
Sbjct: 337 RNTSSWNTMV-TGYAQCGNIDQAKILFDE--MPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +MK+     +       L++C     +E G+ +   + ++ G++       +++ + G+
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGK 452

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            G ++EA ++ +D+  K D   W  +++    H
Sbjct: 453 CGSIEEAFDVFEDITEK-DIVSWNTMIAGYARH 484



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 164/356 (46%), Gaps = 34/356 (9%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I  YA  GLLS ++++F  +   +   +  ++    + G  ++   ++++M      P 
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM------PE 305

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG-------DALVEFYIKCDGGF 183
           ++   +           I+G  + +Q ++   + FD +        + +V  Y +C G  
Sbjct: 306 KNEVSWNA--------MIAG-YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQC-GNI 355

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +  K +    F ++  R    W ++IS   Q+G+SE++  LF  M+ +G   +   L   
Sbjct: 356 DQAKIL----FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S  E+ +LELG+ +H   V + F        ALL+MY K  S+E+A  +F+ +++KD 
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN MI+ Y + GF KE+L L   M +   + D  T +  +S+ S    ++ G +   +
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNS 530

Query: 360 VLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTH 413
           + +N G       +  +ID+      L+ A  +  S+       +W +++     H
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIH 586



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 160/356 (44%), Gaps = 49/356 (13%)

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           D D V WN  ISAY + G  + +L +   M R        T  A +S   +    +  ++
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCARK 112

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
               V     D  +   N ++  Y +  +L+ AR +F+ +  K VVSW++M+ G+  +  
Sbjct: 113 ----VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA ++F +M ++    + ++   +L A V  G +E  + L    M   + S +     
Sbjct: 169 VEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWN----C 220

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y +   ++ A  LFD  ++  +D I+WN MI+ YA++G  S+  +L+ ++   DV 
Sbjct: 221 LMGGYVRKKRLDDARSLFD--RMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV- 277

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKES---------YGYEPSQE----------- 575
                +  +++  V  G+++E   IF+EM E           GY  SQ+           
Sbjct: 278 ---FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334

Query: 576 ------HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                  + +MV    + G++D+A+ L  +MP + D   W  ++S      ++E A
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISGYAQSGQSEEA 389



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 95/201 (47%), Gaps = 19/201 (9%)

Query: 49  QQIH-ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           QQI  AR +      +N    + ++  YA  G +  ++ +F+ +   + + +  ++   +
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G+ E+ L ++ +M               + SC+ +     G+++H ++VK GF +   
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI 441

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKF--------KDLKSRWNSLISLAVQNGKSEKSFE 219
            G+AL+  Y KC        G I+  F        KD+ S WN++I+   ++G  +++  
Sbjct: 442 AGNALLAMYGKC--------GSIEEAFDVFEDITEKDIVS-WNTMIAGYARHGFGKEALA 492

Query: 220 LFKLMRMEGAEFDSGTLINLL 240
           LF+ M+M   + D  TL+ +L
Sbjct: 493 LFESMKMT-IKPDDVTLVGVL 512



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   +DS DI+ WN  ISAY + G       ++  M+    R   +T+  +++  ++   
Sbjct: 52  DSTIVDS-DIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMISGYLSNNK 106

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLG--RAGHMDEARELVKDMPFKPDARVWGP 611
            +  R +F++M       P ++  +  V L G  + G++  AR L   MP K D   W  
Sbjct: 107 FDCARKVFEKM-------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK-DVVSWNA 158

Query: 612 LLSACKMHSETELAELTAEKLI 633
           +LS    +   E A    ++++
Sbjct: 159 MLSGFAQNGFVEEARKIFDQML 180


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 297/507 (58%), Gaps = 10/507 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LI+   + G ++ +F+LF  MR    + D  TL  ++  T    ++ L R +H ++V
Sbjct: 108 YNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGII--TACGINVGLIRQLHALSV 165

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESL 319
           V+     +SV  AL++ YSK   L++A+ +F  +S D+D V WN M+ AY Q     ++L
Sbjct: 166 VTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKAL 225

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL + M   G   D+FT  + +++ + ++++  G Q HA ++++G      V + LID+Y
Sbjct: 226 ELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLY 285

Query: 380 CECED--LNCARKIFDSVKTKTVVSWSSMIKGY-VTHDQSLEALRLFSEMKLEGVEVDFV 436
            +C    L+C RK+FD +    +V W++MI GY +  D S EAL  F +++  G   D  
Sbjct: 286 SKCGGCMLDC-RKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDC 344

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDE 495
           +++ ++ AC N+ +    + +HG ++KL + S   SVN A+   Y+KCG +  A  LFD 
Sbjct: 345 SLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFD- 403

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +   + +++NSMI+ YA+HG   Q   L+ +M + D  P  ITF+ +L AC + G VE
Sbjct: 404 -TMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVE 462

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +G+I F  MK+ +G EP   H++ M++LLGRAG + EA  L++ +PF P    W  LL A
Sbjct: 463 DGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGA 522

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H   ELA   A +L+ ++P NA  YV+L+NIY+  G+    A +R  +RDRG+KK P
Sbjct: 523 CRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKP 582

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAI 702
           GCSWIE+ + +H F A D  HP    I
Sbjct: 583 GCSWIEVNRRIHIFVAEDTFHPMIKKI 609



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 240/492 (48%), Gaps = 21/492 (4%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +  H    N+   + LI +YA    + ++ Q+F+ +  P+S+ Y T++   ++ G+ 
Sbjct: 62  ARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           +    ++ +M    +     T   +I +C   +  I   ++HA  V  G DS+  VG+AL
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNAL 179

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSR--WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
           +  Y K   GF  E   I     + +    WNS++   +Q+ +  K+ EL+  M + G  
Sbjct: 180 ITSYSK--NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI 237

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS-LEDAKM 289
            D  TL ++L +   ++ L  G   H   + S + ++  V + L+ +YSK    + D + 
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 290 LFDKMSDKDRVVWNIMISAY--YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           +FD++S+ D V+WN MIS Y  Y+     E+LE    +   G R D  + +  +S+ S M
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYED-LSDEALECFRQLQGVGHRPDDCSLVCVISACSNM 356

Query: 348 KNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            +   G+Q+H   L+ +    ++SV+N+LI MY +C +L  A+ +FD++     VS++SM
Sbjct: 357 SSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSM 416

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDF----VTIINILPACVNIGALEHVK-YLHGYS 461
           I GY  H    ++L LF  M    +E+DF    +T I++L AC + G +E  K Y +   
Sbjct: 417 IAGYAQHGMGFQSLHLFQRM----LEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
            K G+   +   + +     + G +  A  L +    D      W++++ A   HG+   
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFD-PGFFXWSALLGACRIHGNVEL 531

Query: 522 CFKLYTQMKQSD 533
             K   ++ Q D
Sbjct: 532 AIKAANRLLQLD 543



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 205/431 (47%), Gaps = 46/431 (10%)

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
           C   S NT L+S Y+K + +E A  LFD+M   D V +N +I+AY + G  + + +L + 
Sbjct: 72  CNVFSFNT-LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M  +    D FT    +++     N+   +Q+HA  +  G D  VSV N+LI  Y +   
Sbjct: 131 MREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 385 LNCARKIFDSV-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           L  AR+IF  + + +  VSW+SM+  Y+ H +  +AL L+ EM + G+ VD  T+ ++L 
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-GCIEMAGELFDEEKIDSKD 502
           A  N+  L      H   +K G +  S V + +   Y+KC GC+    ++FDE  I + D
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDE--ISNPD 306

Query: 503 IITWNSMISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII- 560
           ++ WN+MIS Y+ + D S +  + + Q++    RPD  + + +++AC N     +GR + 
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVH 366

Query: 561 ----------------------------FKEMKESYGYEPSQE--HYASMVNLLGRAGHM 590
                                        ++ K  +   P      Y SM+    + G  
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 591 DEARELVK---DMPFKPDARVWGPLLSACKMHSETELAEL---TAEKLISMEPENAGNYV 644
            ++  L +   +M F P    +  +L+AC      E  ++     ++   +EPE AG++ 
Sbjct: 427 FQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE-AGHFS 485

Query: 645 LLSNIYAAAGK 655
            + ++   AGK
Sbjct: 486 CMIDLLGRAGK 496



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 189/372 (50%), Gaps = 8/372 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNL 106
           ++Q+HA  ++  GL   + + + LI SY+  G L  ++++F+ ++   + + + +++   
Sbjct: 157 IRQLHALSVVT-GLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAY 215

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            +  E  K L +Y +M ++ +     T   V+ + + + D + G + HA+++K G+    
Sbjct: 216 MQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNS 275

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS-LAVQNGKSEKSFELFKLMR 225
            VG  L++ Y KC G   + + +           WN++IS  ++    S+++ E F+ ++
Sbjct: 276 HVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQ 335

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASL 284
             G   D  +L+ ++ +   + S   GR VH +A+  D   + +SVN AL++MYSK  +L
Sbjct: 336 GVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNL 395

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
            DAK LFD M + + V +N MI+ Y Q G   +SL L   M+   F     T I+ +++ 
Sbjct: 396 RDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAAC 455

Query: 345 STMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVV 401
           +    +E GK ++ N+++   G + +    + +ID+      L+ A ++ +++       
Sbjct: 456 AHTGRVEDGK-IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFF 514

Query: 402 SWSSMIKGYVTH 413
            WS+++     H
Sbjct: 515 XWSALLGACRIH 526



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 46/325 (14%)

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           FR  L T IA        +++  GK +HA  +++       + N  + +Y +C  L+ AR
Sbjct: 11  FRQFLKTCIAH-------RDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 390 KIFDSVKTKTV-------------------------------VSWSSMIKGYVTHDQSLE 418
           ++FD      V                               VS++++I  Y     +  
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPAC-VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           A +LF EM+   +++D  T+  I+ AC +N+G    ++ LH  S+  GL+S  SV  A+ 
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGL---IRQLHALSVVTGLDSYVSVGNALI 180

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
            SY+K G ++ A  +F     D +D ++WNSM+ AY +H + S+  +LY +M    +  D
Sbjct: 181 TSYSKNGFLKEARRIFHWLSED-RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH-MDEAREL 596
           + T   +LTA  N   +  G     ++ +S GY  +    + +++L  + G  M + R++
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKV 298

Query: 597 VKDMPFKPDARVWGPLLSACKMHSE 621
             ++   PD  +W  ++S   ++ +
Sbjct: 299 FDEIS-NPDLVLWNTMISGYSLYED 322


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 200/659 (30%), Positives = 365/659 (55%), Gaps = 6/659 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H R I+  G  ++ ++ ++L+  Y  L  L  +++VF+ +   + +L+ +I+    +
Sbjct: 122 RKLHGR-ILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVE 180

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G Y + L +++ M  + + P       V  +C  +      + +H  V++ G      +
Sbjct: 181 NGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSL 240

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+  Y +C G     K + +       S W S+IS   QN   E++ ++F  M+   
Sbjct: 241 SNSLIVMYSQC-GYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSE 299

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSVNTALLSMYSKLASLEDA 287
            E +  T+I++L S   L  L+ G+ VHC  + +      L +  AL+  YS    +   
Sbjct: 300 VEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSC 359

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + L   + +++ V WN +IS Y + G   E++    CMV  G   D F+  +++S+ ++ 
Sbjct: 360 EKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASS 419

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            +I++G+Q+H +V++ G  +   V NSL+DMY +C   + A  IF+ +K K++V+W+ MI
Sbjct: 420 GSIQFGQQIHGHVMKRGF-FDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMI 478

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            G+  +  S+EAL LF EM    +E++ VT ++ + AC N+G L+  K++H   +  G  
Sbjct: 479 CGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQ 538

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           +   ++TA+   YAKCG ++ A ++FD   I  K +++W++MI+A+  HG  +    L+ 
Sbjct: 539 NDLYIDTALVDMYAKCGDLQTAQKVFDS--IVEKSVVSWSTMIAAHGIHGQINAATSLFH 596

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M  S+++P+ +TF+ +L+AC +AG V+EG+  F  M++ YG  P+ EH+AS+V+LL RA
Sbjct: 597 KMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRA 656

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++ A E++K +     A +WG LL+ C+++   ++ E  AE+L  +  ++ G Y LLS
Sbjct: 657 GDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYTLLS 716

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           NIYA  G W    K+R+ +   GLKK PG S +EI + ++ F + D S  Q   I   L
Sbjct: 717 NIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVEIDRKIYRFGSGDTSEWQMKEICMFL 775



 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 165/622 (26%), Positives = 316/622 (50%), Gaps = 17/622 (2%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L   C   + L Q+HA ++++  LH N + S+ L++SY+ +G L  S+ VF +  SP+S 
Sbjct: 7   LFRTCSTLRRLTQLHA-HLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSF 65

Query: 98  LYGTILKNLSKFGEYEKTLLVYK---QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           ++  ++K       + + L ++    QM  +        YP VIR+ + + + I G K+H
Sbjct: 66  MFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLH 125

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
            +++K GF     +G +LV  Y +     + +K   +   +DL   W+S+IS  V+NG  
Sbjct: 126 GRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDL-VLWSSIISCYVENGVY 184

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            +  E+F+ M  EG   DS  L+++  +  ++  L L + VH   +      D S++ +L
Sbjct: 185 REGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSL 244

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MYS+   L  AK LF+ + D+    W  MISAY Q+   +E+L++ + M  S    + 
Sbjct: 245 IVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPND 304

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFD 393
            T I+ ++S + +  ++ GK +H  VLRN      + +  +LID Y  C  ++   K+  
Sbjct: 305 VTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLH 364

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           S+  + +VSW+++I  Y     + EA+  F+ M  +G+  D  ++ + + A  + G+++ 
Sbjct: 365 SIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQF 424

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +HG+ MK G      V  ++   Y+KCG    A  +F+  KI  K I+ WN MI  +
Sbjct: 425 GQQIHGHVMKRGFFD-EFVQNSLMDMYSKCGFASSAYTIFN--KIKHKSIVAWNCMICGF 481

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           +++G   +   L+ +M ++ +  + +TFL  + AC N G +++G+ I  ++  + G +  
Sbjct: 482 SQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVT-GNQND 540

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
                ++V++  + G +  A++ V D   +     W  +++A  +H +   A     K++
Sbjct: 541 LYIDTALVDMYAKCGDLQTAQK-VFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMV 599

Query: 634 --SMEPENAGNYVLLSNIYAAA 653
             +++P    N V   NI +A 
Sbjct: 600 LSNIKP----NEVTFMNILSAC 617


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 205/645 (31%), Positives = 349/645 (54%), Gaps = 15/645 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           ++++D Y   G L  +  VF+S+ S +S+ +  ++      G  +K L  ++Q  + +  
Sbjct: 74  NSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFE 133

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T    I +C  L     G K+H  +++ GF     V ++L+  Y       +N+  
Sbjct: 134 PNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYA------DNDME 187

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRST 243
             +  F ++  R    W+ +I   VQ G+++ + +LF  M    + E D  T++++L++ 
Sbjct: 188 RAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKAC 247

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
                + +GR VH V +      DL V  +++ MYSK    E A   F++M  ++ V WN
Sbjct: 248 ANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWN 307

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            +IS   ++    E+L L   M ++GFRAD  T +  + S     +    K +H+ V+R 
Sbjct: 308 SIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRW 367

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +    V NSLID Y +C+ +  A K+FD +KTK  VSWS+MI G+    +  EA+ LF
Sbjct: 368 GYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALF 427

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            EM     + + VTI+++L A      L+  K+ HG +++ GL +  +V TAI   YAKC
Sbjct: 428 QEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKC 487

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I ++ + FD+  I  K+I++W +MI+A   +G       L ++MK   ++P+++T L 
Sbjct: 488 GEIGLSRKAFDQ--IPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLS 545

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-- 601
           +L+AC + GLVEEG   F+ M + +G EP  EHY+ MV++L RAG ++ A  L++ MP  
Sbjct: 546 VLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPER 605

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +  A +WG LLSAC+    + L    A +++ +EP+++  Y L S++YAA+G W   A+
Sbjct: 606 MRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAAR 665

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           MR  ++ RG++   G S + +      F A D+SHP+A  I+ ++
Sbjct: 666 MRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVV 710



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 151/530 (28%), Positives = 270/530 (50%), Gaps = 33/530 (6%)

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
           GFDS    G+++++FY+K  G  ++   +    F  ++SR    WN +I   +  G S+K
Sbjct: 65  GFDSLTSTGNSVLDFYMK-TGALDSALFV----FDSMRSRDSVSWNIMIHGHLSRGASDK 119

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
               F+  R+   E +  TL+  + +   L ++E G  +H   + S F    SV  +LLS
Sbjct: 120 GLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLS 179

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLF 335
           MY+    +E A+ LFD+M ++D + W++MI  Y Q+G  K +L+L + M   +    D  
Sbjct: 180 MYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGI 238

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T ++ + + +   +I  G+ +H  V+  G DY + V NS+IDMY +C+D   A K F+ +
Sbjct: 239 TMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEM 298

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             +  VSW+S+I G V  ++  EAL LF  M   G   D VT++N+L +C         K
Sbjct: 299 PCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCK 358

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           ++H   ++ G      V  ++  +Y+KC  IE+A +LFD  ++ +KD ++W++MI+ +  
Sbjct: 359 FIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFD--RLKTKDTVSWSAMIAGFNH 416

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-CVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            G   +   L+ +M Q+  +P+ +T L LL A  V+A L        K  K ++G    +
Sbjct: 417 CGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADL--------KRSKWAHGIAIRR 468

Query: 575 EHYA------SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAE 626
              A      +++++  + G +  +R+    +P K +   WG +++AC M+  +   LA 
Sbjct: 469 GLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEK-NIVSWGAMIAACGMNGLARDALAL 527

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           L+  KL  ++P       +LS          G++     ++D G++  PG
Sbjct: 528 LSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVE--PG 575



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 194/397 (48%), Gaps = 12/397 (3%)

Query: 11  LQSGHVK-----FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLH 62
           +Q+G  K     FL   +N +   +      S+L  C N   +   + +H   +I  GL 
Sbjct: 212 VQTGEAKMALQLFLEMTSNASI-ELDGITMVSVLKACANTGDISMGRSVHG-VVICRGLD 269

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            +L + +++ID Y+       + + FN +   N++ + +I+  L +  ++ + L ++  M
Sbjct: 270 YDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSM 329

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                   E T   +++SC   +D    + IH+ V++ G++  + V ++L++ Y KCD  
Sbjct: 330 GKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLI 389

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
               K   + K KD  S W+++I+     GK +++  LF+ M     + +  T+++LL +
Sbjct: 390 ELAWKLFDRLKTKDTVS-WSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEA 448

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
                 L+  +  H +A+      +++V TA+L MY+K   +  ++  FD++ +K+ V W
Sbjct: 449 FSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSW 508

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
             MI+A   +G  +++L LL  M   G + ++ T ++ +S+ S    +E G     N+++
Sbjct: 509 GAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQ 568

Query: 363 N-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           + G +  +  ++ ++DM      LN A  + + +  +
Sbjct: 569 DHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPER 605


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 181/483 (37%), Positives = 289/483 (59%), Gaps = 8/483 (1%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ S     SL     VH + V   F +D  + T L++M+S+L ++++A+ +FDK   + 
Sbjct: 75  LILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRT 134

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI----AAVSSISTMKNIEWGK 354
             VWN +  A   +G   + LEL   M   G  +D FT      A V+S   +  ++ GK
Sbjct: 135 IYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGK 194

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++HA++LR+G    V V  +L+DMY     ++ A  +FD +  K VVSWS+MI  Y  + 
Sbjct: 195 EIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNG 254

Query: 415 QSLEALRLFSEMKLEGVE--VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +  EAL LF EM L   +   + VT++++L AC    ALE  K +H Y ++ GL+S+  V
Sbjct: 255 KPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPV 314

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   YA+CG +E    +FD  ++  KD++ WNS+IS+Y  HG   +  K++ +M   
Sbjct: 315 ISALITMYARCGKLESGQLIFD--RMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDH 372

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
              P  I+F+ +L AC + GLVEEG+ +F+ M + +G +PS EHYA MV+LLGRA  +DE
Sbjct: 373 GFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDE 432

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A ++++D+  +P  +VWG LL AC++H   ELAE  +++L  +EP NAGNYVLL++IYA 
Sbjct: 433 AAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAE 492

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           A  W+ V +++  L  R L+K PG SWIE+ + ++ F + D+ +PQ + ++ +L  L  E
Sbjct: 493 AEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNE 552

Query: 713 IME 715
           + +
Sbjct: 553 MKQ 555



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 188/362 (51%), Gaps = 9/362 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G  Q+  L++ LI+ ++ L  +  +++VF+        ++  + + L+  G     L +Y
Sbjct: 99  GFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELY 158

Query: 120 KQMALQSMYPAEDTYPFVIRSC---SCLLDFIS-GEKIHAQVVKLGFDSFDDVGDALVEF 175
            +M +  +     TY +++++C    CL+ F+  G++IHA +++ G+ +   V   L++ 
Sbjct: 159 PRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDM 218

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF--DS 233
           Y +            +   K++ S W+++I+   +NGK  ++ ELF+ M +   +   +S
Sbjct: 219 YARFGCVSYASAVFDEMPVKNVVS-WSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T++++L++     +LE G+++H   +       L V +AL++MY++   LE  +++FD+
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDR 337

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  KD V+WN +IS+Y   G+ ++++++   M+  GF     + I+ + + S    +E G
Sbjct: 338 MHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEG 397

Query: 354 KQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYV 411
           K++  ++++ +G    V  +  ++D+      L+ A KI + ++ +     W S++    
Sbjct: 398 KKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACR 457

Query: 412 TH 413
            H
Sbjct: 458 IH 459



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 105/210 (50%), Gaps = 4/210 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q  ++IHA +I+ HG   ++ + + L+D YA  G +S +  VF+ +   N + +  ++  
Sbjct: 191 QKGKEIHA-HILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIAC 249

Query: 106 LSKFGEYEKTLLVYKQMALQSM--YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
            +K G+  + L ++++M L +    P   T   V+++C+       G+ IHA +++ G D
Sbjct: 250 YAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLD 309

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
           S   V  AL+  Y +C G  E+ + +  R  K     WNSLIS    +G   K+ ++F+ 
Sbjct: 310 SILPVISALITMYARC-GKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEE 368

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGR 253
           M   G      + I++L +      +E G+
Sbjct: 369 MIDHGFSPSHISFISVLGACSHTGLVEEGK 398



 Score = 43.5 bits (101), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C     L+Q   IHA YI+  GL   L + S LI  YA  G L   Q +F+ +  
Sbjct: 282 SVLQACAAFAALEQGKLIHA-YILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHK 340

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + +L+ +++ +    G   K + ++++M      P+  ++  V+ +CS       G+K+
Sbjct: 341 KDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKL 400

Query: 154 HAQVVK 159
              +VK
Sbjct: 401 FESMVK 406


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 199/551 (36%), Positives = 301/551 (54%), Gaps = 41/551 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+++S   QNG  +++ E+F  M  +    +S +   +L + V+   +E  R       
Sbjct: 145 WNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDAR--RLFES 198

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +D+  +L     ++  Y K   L DA+ +FD+M ++D V WN MIS Y Q+G   E LE
Sbjct: 199 KADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG---ELLE 253

Query: 321 LLMCMVRSGFRADLFTAIAAVSS----------------ISTMKNIEWGKQMHANVLRNG 364
                  S  R D+FT  A VS                 +    ++ W   +   V    
Sbjct: 254 AQRLFEESPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKR 312

Query: 365 SDY-----------QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            D             VS  N++I  Y +  D+  AR  FD +  +  +SW+++I GY   
Sbjct: 313 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 372

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               EAL LF EMK +G  ++  T  + L  C  I ALE  K +HG  +K GL S   V 
Sbjct: 373 GYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVG 432

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            A+ + Y KCG I+ A  +F  E I+ K++++WN+MI+ YA+HG   +   L+  MK++ 
Sbjct: 433 NALLVMYCKCGNIDDAYIVF--EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTG 490

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           + PD +T +G+L+AC + GLV++G   F  M + YG   + +HY  M++LLGRAG +D+A
Sbjct: 491 ILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDA 550

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
           + L+K+MPF+PDA  WG LL A ++H  TEL E  A+ +  MEP+N+G YVLLSN+YAA+
Sbjct: 551 QNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAAS 610

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           G+W  V +MR  +RDRG+KK PG SW+E+   +H F   D  HP+ D IYT L  L+L++
Sbjct: 611 GRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKM 670

Query: 714 MEGRRESSEEL 724
            +    SS +L
Sbjct: 671 KKEGYVSSTKL 681



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 177/388 (45%), Gaps = 72/388 (18%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLM-RMEGAEFD---SGTLIN----LLRSTVELKSLEL 251
           +WN  I+  ++NG+ + +  LF  M R     ++   SG L N    L R   E      
Sbjct: 51  KWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP--- 107

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
                         +DL     ++S   +  +L  A++LFD+M ++D V WN M+S Y Q
Sbjct: 108 -------------TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQ 154

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG------- 364
           +G+ KE+ E             +F  +   +SIS      W   + A V +NG       
Sbjct: 155 NGYVKEAKE-------------IFDEMPCKNSIS------WNGMLAAYV-QNGRIEDARR 194

Query: 365 -----SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
                +D+++   N ++  Y +   L  AR IFD +  +  VSW++MI GY  + + LEA
Sbjct: 195 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEA 254

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN-TAIFI 478
            RLF E  +     D  T   ++   V  G L+  + +       G+   +SV+  AI  
Sbjct: 255 QRLFEESPVR----DVFTWTAMVSGYVQNGMLDEARRVFD-----GMPEKNSVSWNAIIA 305

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y +C  ++ A ELF  E +  +++ +WN+MI+ YA++GD +Q    + +M Q D     
Sbjct: 306 GYVQCKRMDQARELF--EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS---- 359

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           I++  ++     +G  EE   +F EMK 
Sbjct: 360 ISWAAIIAGYAQSGYGEEALHLFVEMKR 387



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 151/321 (47%), Gaps = 28/321 (8%)

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           +D D V WNI I+ + ++G    +L L   M R   R+ + +  A +S   +       +
Sbjct: 45  TDADIVKWNIAITNHMRNGQCDSALRLFNSMPR---RSSI-SWNAMISGCLSNDKFYLAR 100

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+   +        +   N +I       +L  AR +FD +  + VVSW++M+ GY  + 
Sbjct: 101 QLFEKM----PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNG 156

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              EA  +F EM  +    + ++   +L A V  G +E  + L        L S +    
Sbjct: 157 YVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWN---- 208

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
            +   Y K   +  A  +FD  ++  +D ++WN+MIS YA++G+  +  +L+   ++S V
Sbjct: 209 CMMGGYVKRNRLVDARGIFD--RMPERDEVSWNTMISGYAQNGELLEAQRLF---EESPV 263

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           R D+ T+  +++  V  G+++E R +F  M E      +   + +++    +   MD+AR
Sbjct: 264 R-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEK-----NSVSWNAIIAGYVQCKRMDQAR 317

Query: 595 ELVKDMPFKPDARVWGPLLSA 615
           EL + MP + +   W  +++ 
Sbjct: 318 ELFEAMPCQ-NVSSWNTMITG 337



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 120/251 (47%), Gaps = 9/251 (3%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           QN+   + +I  YA  G ++ ++  F+ +   +S+ +  I+   ++ G  E+ L ++ +M
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                     T+   + +C+ +     G+++H +VVK G +S   VG+AL+  Y KC G 
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC-GN 444

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            ++   + +   +     WN++I+   ++G  +++  LF+ M+  G   D  T++ +L +
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVN----TALLSMYSKLASLEDAKMLFDKMS-DK 297
                 ++ G   +  ++  D+   ++ N    T ++ +  +   L+DA+ L   M  + 
Sbjct: 505 CSHTGLVDKG-TEYFYSMTQDY--GITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP 561

Query: 298 DRVVWNIMISA 308
           D   W  ++ A
Sbjct: 562 DAATWGALLGA 572


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 182/494 (36%), Positives = 272/494 (55%), Gaps = 33/494 (6%)

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L  L+LG  VH   ++        V + +++ Y+    ++ +  +F+ + +   +++N M
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSM 142

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           I AY + GF + ++     M   GF  D FT    + S   + ++  GK +H  +LR G 
Sbjct: 143 IRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGL 202

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV------------------------- 400
            + + V  SLI +Y +C ++N A K+FD++  + V                         
Sbjct: 203 QFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFER 262

Query: 401 ------VSWSSMIKGYVTHDQSLEALRLFSEMKLE--GVEVDFVTIINILPACVNIGALE 452
                 VSW++MI GY     + +AL LF EM  E  GV  ++VTI+++LPAC  +  LE
Sbjct: 263 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 322

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +H  + ++GLNS +SV  A+   YAKCG +  A   FD+   + K++I WN+MI+A
Sbjct: 323 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 382

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA +G   Q    + +M Q+ ++PD ITF GLL+ C ++GLV+ G   F  M  +Y   P
Sbjct: 383 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 442

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             EHYA + +LLGRAG + EA +LV +MP      +WG LL+AC+ H   E+AE  A KL
Sbjct: 443 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 502

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +EPEN GNYVLLSN+YA AG+W  V K+R  ++ +G KK+PGCSWIEI    H F   
Sbjct: 503 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGG 562

Query: 693 DQSHPQADAIYTIL 706
           D SHPQ   IY  L
Sbjct: 563 DTSHPQGKEIYMFL 576



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 182/403 (45%), Gaps = 38/403 (9%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G ++HA ++  G      VG  +V FY    G  ++   +     +     +NS+I    
Sbjct: 89  GHQVHAHMLLRGLQPTALVGSKMVAFYAS-SGDIDSSVSVFNGIGEPSSLLFNSMIRAYA 147

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + G +E++   +  M   G   D  T   +L+S+VEL S+ +G+ VH + +      DL 
Sbjct: 148 RYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLY 207

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY------------------- 310
           V T+L+ +Y K   + DA  +FD M+ +D   WN +++ Y                    
Sbjct: 208 VATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 267

Query: 311 ------------QSGFPKESLELLMCMVR--SGFRADLFTAIAAVSSISTMKNIEWGKQM 356
                       QSG  +++L L   MV+  SG R +  T ++ + + + +  +E G+Q+
Sbjct: 268 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 327

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHD 414
           H    R G +   SV  +L  MY +C  L  AR  FD +    K +++W++MI  Y ++ 
Sbjct: 328 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 387

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE-HVKYLHGYSMKLGLNSLSSVN 473
             L+A+  F EM   G++ D +T   +L  C + G ++  +KY +  S    +N      
Sbjct: 388 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 447

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
             +     + G +  A +L  E  + +   I W S+++A  KH
Sbjct: 448 ACVADLLGRAGRLAEASKLVGEMPMPAGPSI-WGSLLAACRKH 489



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 165/331 (49%), Gaps = 35/331 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            Q+HA +++L GL    ++ S ++  YA+ G +  S  VFN I  P+SLL+ ++++  ++
Sbjct: 90  HQVHA-HMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYAR 148

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           +G  E+T+  Y  M          T+PFV++S   LL    G+ +H  ++++G      V
Sbjct: 149 YGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYV 208

Query: 169 GDALVEFYIKC----DGG--FEN-----------------EKGMIQRK---FKDLKSR-- 200
             +L+  Y KC    D G  F+N                 + G I      F+ +  R  
Sbjct: 209 ATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI 268

Query: 201 --WNSLISLAVQNGKSEKSFELFKLMRME--GAEFDSGTLINLLRSTVELKSLELGRIVH 256
             W ++IS   Q+G ++++  LF  M  E  G   +  T++++L +  +L +LE GR +H
Sbjct: 269 VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIH 328

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNIMISAYYQSGF 314
            +A       + SV  AL +MY+K  SL DA+  FDK+  ++K+ + WN MI+AY   G 
Sbjct: 329 ELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH 388

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
             +++     M+++G + D  T    +S  S
Sbjct: 389 GLQAVSTFREMIQAGIQPDDITFTGLLSGCS 419



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 130/282 (46%), Gaps = 32/282 (11%)

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
           ++ +  ++ G Q+HA++L  G      V + ++  Y    D++ +  +F+ +   + + +
Sbjct: 80  LTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLF 139

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +SMI+ Y  +  +   +  +  M   G   D+ T   +L + V + ++   K +HG  ++
Sbjct: 140 NSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILR 199

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDE---------------------------- 495
           +GL     V T++ I Y KCG I  AG++FD                             
Sbjct: 200 IGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAI 259

Query: 496 -EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPDLITFLGLLTACVNAG 552
            E++  ++I++W +MIS Y++ G   Q   L+ +M + D  VRP+ +T + +L AC    
Sbjct: 260 FERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLS 319

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            +E GR I  E+    G   +     ++  +  + G + +AR
Sbjct: 320 TLERGRQI-HELACRMGLNSNASVLIALTAMYAKCGSLVDAR 360


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 177/480 (36%), Positives = 287/480 (59%), Gaps = 8/480 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           ++L+S V  +SL  GR +H   +VS    D  + T L+ +Y+    +  A+ LFD M  +
Sbjct: 67  SVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKR 126

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +WN++I AY + G  + +++L   MV  G   D FT   A+ + + + ++E G+++H
Sbjct: 127 NVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVH 186

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             VL       + V   L+DMY +C  ++ AR +FD ++ +  V W+SMI  Y  + + +
Sbjct: 187 ERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPM 246

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EAL L  +M   GV     T+++ + A  +  AL   + LHG+  + G +    + T++ 
Sbjct: 247 EALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLV 306

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK-QSDVRP 536
             YAK G +++A  LF  E++  +++++WN+MI  Y  HG + +  KL+ +M+ ++ V P
Sbjct: 307 DMYAKSGWVQVARVLF--EQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D ITF+G+L+AC + G+V+E +  F  M + Y  +P+ +H+  +V++LG AG  +EA +L
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           +K MP +PD+ +WG LL+ CK+H   EL EL  +KLI +EPE+AGNYVLLSNIYA +GKW
Sbjct: 425 IKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKW 484

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
              A++R  + +RGLKK  GCSWIE+    H F   D SHP++  IY      ELE +EG
Sbjct: 485 EKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYE-----ELERLEG 539



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 177/340 (52%), Gaps = 15/340 (4%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  V++SC       +G ++H +++  G      +   LV+ Y  C        G  +R 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAAC-----GLVGHARRL 119

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           F  +  R    WN LI    ++G  E + +L++ M   G E D+ T    L++   L  L
Sbjct: 120 FDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDL 179

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           E GR VH   + + + +D+ V   L+ MY+K   ++DA+ +FD++  +D VVWN MI+AY
Sbjct: 180 ETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAY 239

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            Q+G P E+L L   M  +G    + T ++ +S+ +    +  G+++H    R G D Q 
Sbjct: 240 GQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQD 299

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            +  SL+DMY +   +  AR +F+ +  + +VSW++MI GY  H    EAL+LF++M++E
Sbjct: 300 KLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVE 359

Query: 430 G-VEVDFVTIINILPACVNIGALEHVKYLHG-----YSMK 463
             V  D +T + +L AC + G ++  K   G     YS+K
Sbjct: 360 AQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIK 399



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 163/316 (51%), Gaps = 10/316 (3%)

Query: 34  HSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           H  S+L  C   + L   +Q+H R +++ GL  + +L++ L+D YA  GL+  ++++F+ 
Sbjct: 64  HYTSVLQSCVASRSLGTGRQLHGR-LLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDG 122

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           +   N  L+  +++  ++ G +E  + +Y+ M    + P   TYP  +++C+ LLD  +G
Sbjct: 123 MPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETG 182

Query: 151 EKIHAQVV--KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            ++H +V+    G D F  V   LV+ Y KC G  ++ + +  R        WNS+I+  
Sbjct: 183 REVHERVLGTHWGEDMF--VCAGLVDMYAKC-GCVDDARAVFDRIRVRDSVVWNSMIAAY 239

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            QNG+  ++  L + M   G      TL++ + +  +  +L  GR +H       F +  
Sbjct: 240 GQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQD 299

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VR 327
            + T+L+ MY+K   ++ A++LF+++  ++ V WN MI  Y   G   E+L+L   M V 
Sbjct: 300 KLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVE 359

Query: 328 SGFRADLFTAIAAVSS 343
           +    D  T +  +S+
Sbjct: 360 AQVTPDNITFVGVLSA 375


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 318/577 (55%), Gaps = 22/577 (3%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR--------WN 202
           ++IHA ++  G    + V   + EF       F    G +   F  L           +N
Sbjct: 22  KQIHAHLIASGLLHDEFVLSKVSEF-------FGKHIGFVDYAFDFLNQTDLHVGTLPYN 74

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +LI+    +   + +F ++  +   G   D  T   +L++  +   ++ G  VH VAV  
Sbjct: 75  TLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKM 134

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F  DL V  +LL  YS       A  +FD+M  +D V W  +IS Y ++G   E++ L 
Sbjct: 135 GFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLF 194

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
           + M       ++ T ++ + +   M  +  GK +H  V +      + V N+L+DMY +C
Sbjct: 195 LKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKC 251

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           E L  ARK+FD +  + +VSW+S+I G V   Q  ++L LF +M++ GVE D + + ++L
Sbjct: 252 ECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVL 311

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC ++GAL++ +++  Y  + G+     + TA+   YAKCGCIEMA  +F+   I +++
Sbjct: 312 SACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFN--GIPNRN 369

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I TWN+++   A HG   +  K +  M  + +RP+ +TFL +LTAC ++GLV EGR  F 
Sbjct: 370 IFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFY 429

Query: 563 EM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +M  + + + P  EHY  M++LL RAG +DEA + +++MP  PD  +WG LLSACK +  
Sbjct: 430 QMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGN 489

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            EL++     L+ ++ +++G YVLLSNIYA   +W+ V ++R  ++D+G++K PG S IE
Sbjct: 490 VELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIE 549

Query: 682 IGKLVHEFWAADQSHPQADAIYTILGILELEI-MEGR 717
           +    HEF   D +H + + I+ +L IL  ++ +EG 
Sbjct: 550 VDGEAHEFLVGDTNHSRNEDIHILLNILANQVYLEGH 586



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/530 (25%), Positives = 238/530 (44%), Gaps = 47/530 (8%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-SPNSLLYG 100
           C+  + L+QIHA  I    LH   +LS        ++G +  +    N       +L Y 
Sbjct: 15  CKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYN 74

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           T++   +     +   LVY ++      P   T+P V+++C+  L    GE++H   VK+
Sbjct: 75  TLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKM 134

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
           GF     V ++L+ FY  C      + G   R F ++  R    W  LIS  V+ G  ++
Sbjct: 135 GFLCDLYVQNSLLHFYSVC-----GKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDE 189

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +  LF  ++M+    +  T +++L +   +  L +G+ VH +     F   L V  AL+ 
Sbjct: 190 AINLF--LKMDVVP-NVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVD 246

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K   L +A+ LFD++ D+D V W  +IS   Q   PK+SLEL   M  SG   D   
Sbjct: 247 MYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRII 306

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + +S+ +++  +++G+ +   + R G ++ + +  +L+DMY +C  +  A  IF+ + 
Sbjct: 307 LTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIP 366

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + + +W++++ G   H    EAL+ F  M   G+  + VT + IL AC + G       
Sbjct: 367 NRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSG------- 419

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
                                ++  +    +M  + F+     S  +  +  MI    + 
Sbjct: 420 --------------------LVAEGRSYFYQMISQPFNF----SPRLEHYGCMIDLLCRA 455

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           G   + +K    M    + PD++ +  LL+AC   G VE  + I   + E
Sbjct: 456 GLLDEAYKFIRNMP---LPPDVLIWGALLSACKANGNVELSQEILSHLLE 502



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 160/339 (47%), Gaps = 33/339 (9%)

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           F  +  ++SI   K I   KQ+HA+++ +G  +   V + + + +   + +      FD 
Sbjct: 3   FLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFF--GKHIGFVDYAFDF 60

Query: 395 VKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +    +    + ++++I  Y +      A  ++  +   G   D  T   +L AC     
Sbjct: 61  LNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLG 120

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           ++  + +HG ++K+G      V  ++   Y+ CG    AG +FDE  +  +D+++W  +I
Sbjct: 121 VQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLV--RDVVSWTGLI 178

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYG 569
           S Y + G + +   L+ +M   DV P++ TF+ +L AC   G +  G+ +   + K ++G
Sbjct: 179 SGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFG 235

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA---CKMHSETELAE 626
                 +  ++V++  +   + EAR+L  ++P + D   W  ++S    CK   ++   E
Sbjct: 236 IGLVVGN--ALVDMYVKCECLCEARKLFDELPDR-DIVSWTSIISGLVQCKQPKDS--LE 290

Query: 627 LTAEKLIS-MEPENAGNYVLLSNIYAAA--------GKW 656
           L  +  IS +EP+     ++L+++ +A         G+W
Sbjct: 291 LFYDMQISGVEPDR----IILTSVLSACASLGALDYGRW 325


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/502 (36%), Positives = 283/502 (56%), Gaps = 3/502 (0%)

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
           S+    +  L+     E D      LL+   +L  L+ G++VH   + S+F  DL +  +
Sbjct: 55  SKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNS 114

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL MY++  SLE A+ LFD+M  +D V W  MI+ Y Q+    ++L L   M+  G   +
Sbjct: 115 LLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPN 174

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            FT  + V     M +   G+Q+HA   + G    V V +SL+DMY  C  L  A  +FD
Sbjct: 175 EFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFD 234

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  K  VSW+++I GY    +  EAL LF  M+ EG      T   +L +C ++G LE 
Sbjct: 235 KLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQ 294

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K+LH + MK     +  V   +   YAK G I  A ++FD  K+   D+++ NSM+  Y
Sbjct: 295 GKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFD--KLVKVDVVSCNSMLIGY 352

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +  + + +M +  + P+ ITFL +LTAC +A L++EG+  F  M++ Y  EP 
Sbjct: 353 AQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPK 411

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
             HYA++V+LLGRAG +D+A+  +++MP +P   +WG LL A KMH  TE+    A+++ 
Sbjct: 412 VSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVF 471

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            ++P   G + LL+NIYA+AG+W  VAK+R  ++D G+KK P CSW+E+   VH F A D
Sbjct: 472 ELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVAND 531

Query: 694 QSHPQADAIYTILGILELEIME 715
            +HPQ + I+ +   L  +I E
Sbjct: 532 VAHPQKEKIHKMWEKLNQKIKE 553



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 195/395 (49%), Gaps = 10/395 (2%)

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           S+ P    Y  +++ C+ L     G+ +H  V+   F     + ++L+  Y +C G  E 
Sbjct: 69  SLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARC-GSLEG 127

Query: 186 EKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            +    R F ++  R    W S+I+   QN ++  +  LF  M  +GAE +  TL +L++
Sbjct: 128 AR----RLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVK 183

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
               + S   GR +H          ++ V ++L+ MY++   L +A ++FDK+  K+ V 
Sbjct: 184 CCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS 243

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN +I+ Y + G  +E+L L + M R G+R   FT  A +SS S+M  +E GK +HA+++
Sbjct: 244 WNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLM 303

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++       V N+L+ MY +   +  A K+FD +    VVS +SM+ GY  H    EA +
Sbjct: 304 KSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQ 363

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F EM   G+E + +T +++L AC +   L+  K+  G   K  +    S    I     
Sbjct: 364 QFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLG 423

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           + G ++ A    +E  I+   +  W +++ A   H
Sbjct: 424 RAGLLDQAKSFIEEMPIEPT-VAIWGALLGASKMH 457



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 122/261 (46%), Gaps = 3/261 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA     +G H N+ + S+L+D YA  G L  +  VF+ +   N + +  ++   ++
Sbjct: 195 RQIHA-CCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYAR 253

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE E+ L ++ +M  +   P E TY  ++ SCS +     G+ +HA ++K        V
Sbjct: 254 KGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYV 313

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G+ L+  Y K  G   + + +  +  K      NS++    Q+G  +++ + F  M   G
Sbjct: 314 GNTLLHMYAK-SGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFG 372

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            E +  T +++L +    + L+ G+    +    +    +S    ++ +  +   L+ AK
Sbjct: 373 IEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAK 432

Query: 289 MLFDKMSDKDRV-VWNIMISA 308
              ++M  +  V +W  ++ A
Sbjct: 433 SFIEEMPIEPTVAIWGALLGA 453


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/517 (36%), Positives = 293/517 (56%), Gaps = 12/517 (2%)

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           D+ S  N LI    + G  +++  L         +    T  +L+ S  +  SL  G  V
Sbjct: 45  DINSNNNQLIQSLCKGGNLKQALHLLCCEPNPTQQ----TFEHLIYSCAQKNSLSYGLDV 100

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   V S F +D  + T L++MY +L S++ A  +FD+  ++   VWN +  A    G  
Sbjct: 101 HRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHG 160

Query: 316 KESLELLMCMVRSGFRADLFTAI----AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           KE L+L + M   G  +D FT      A V S  ++  +  GK++HA++LR+G +  + V
Sbjct: 161 KELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHV 220

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +L+D+Y +   ++ A  +F ++ TK  VSWS+MI  +  ++  ++AL LF  M  E  
Sbjct: 221 MTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEAC 280

Query: 432 E--VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
               + VT++N+L AC  + ALE  K +HGY ++  L+S+  V  A+   Y +CG + M 
Sbjct: 281 NSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMG 340

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             +FD  K   +D+++WNS+IS Y  HG   +  +++  M    V P  I+F+ +L AC 
Sbjct: 341 QRVFDNMK--KRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACS 398

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGLVEEG+I+F+ M   Y   P  EHYA MV+LLGRA  + EA +L++DM F+P   VW
Sbjct: 399 HAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVW 458

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LL +C++H   ELAE  +  L  +EP NAGNYVLL++IYA A  W+    +   L  R
Sbjct: 459 GSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEAR 518

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           GL+K PGCSWIE+ + V+ F + D+ +PQ + I+ +L
Sbjct: 519 GLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALL 555



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 183/390 (46%), Gaps = 29/390 (7%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L+ S  + N I S N+ L    +++L K G  ++ L     +      P + T+  +I S
Sbjct: 36  LNPSANLINDINSNNNQL----IQSLCKGGNLKQAL----HLLCCEPNPTQQTFEHLIYS 87

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK---FKDL 197
           C+       G  +H  +V  GFD    +   L+  Y         E G I R    F + 
Sbjct: 88  CAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYY--------ELGSIDRALKVFDET 139

Query: 198 KSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV----ELKSL 249
           + R    WN+L       G  ++  +L+  M   G   D  T   +L++ V     +  L
Sbjct: 140 RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPL 199

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             G+ +H   +   +  ++ V T LL +Y+K  S+  A  +F  M  K+ V W+ MI+ +
Sbjct: 200 RKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACF 259

Query: 310 YQSGFPKESLELLMCMVRSGFRA--DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            ++  P ++LEL   M+     +  +  T +  + + + +  +E GK +H  +LR   D 
Sbjct: 260 AKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDS 319

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            + V N+LI MY  C ++   +++FD++K + VVSW+S+I  Y  H    +A+++F  M 
Sbjct: 320 ILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMI 379

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYL 457
            +GV   +++ I +L AC + G +E  K L
Sbjct: 380 HQGVSPSYISFITVLGACSHAGLVEEGKIL 409



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 12/213 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IHA +I+ HG   N+ + + L+D YA  G +S +  VF ++ + N + +  ++   +K
Sbjct: 203 KEIHA-HILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAK 261

Query: 109 FGEYEKTLLVYKQMALQSM--YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
                K L +++ M  ++    P   T   ++++C+ L     G+ IH  +++   DS  
Sbjct: 262 NEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSIL 321

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            V +AL+  Y +C      E  M QR F ++K R    WNSLIS+   +G  +K+ ++F+
Sbjct: 322 PVLNALITMYGRC-----GEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFE 376

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
            M  +G      + I +L +      +E G+I+
Sbjct: 377 NMIHQGVSPSYISFITVLGACSHAGLVEEGKIL 409


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 297/507 (58%), Gaps = 10/507 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LI+   + G ++ +F+LF  MR    + D  TL  ++  T    ++ L R +H ++V
Sbjct: 108 YNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGII--TACGINVGLIRQLHALSV 165

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESL 319
           V+     +SV  AL++ YSK   L++A+ +F  +S D+D V WN M+ AY Q     ++L
Sbjct: 166 VTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKAL 225

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL + M   G   D+FT  + +++ + ++++  G Q HA ++++G      V + LID+Y
Sbjct: 226 ELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLY 285

Query: 380 CECED--LNCARKIFDSVKTKTVVSWSSMIKGY-VTHDQSLEALRLFSEMKLEGVEVDFV 436
            +C    L+C RK+FD +    +V W++MI GY +  D S EAL  F ++++ G   D  
Sbjct: 286 SKCGGCMLDC-RKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDC 344

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDE 495
           +++ ++ AC N+ +    + +HG ++KL + S   SVN A+   Y+KCG +  A  LFD 
Sbjct: 345 SLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFD- 403

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +   + +++NSMI+ YA+HG   Q   L+ +M +    P  ITF+ +L AC + G VE
Sbjct: 404 -TMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVE 462

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +G+I F  MK+ +G EP   H++ M++LLGRAG + EA  L++ +PF P    W  LL A
Sbjct: 463 DGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGA 522

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H   ELA   A +L+ ++P NA  YV+L+NIY+  G+    A +R  +RDRG+KK P
Sbjct: 523 CRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKP 582

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAI 702
           GCSWIE+ + +H F A D  HP    I
Sbjct: 583 GCSWIEVNRRIHIFVAEDTFHPMIKKI 609



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 236/488 (48%), Gaps = 13/488 (2%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +  H    N+   + LI +YA    + ++ Q+F+ +  P+S+ Y T++   ++ G+ 
Sbjct: 62  ARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           +    ++ +M    +     T   +I +C   +  I   ++HA  V  G DS+  VG+AL
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNAL 179

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSR--WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
           +  Y K   GF  E   I     + +    WNS++   +Q+ +  K+ EL+  M + G  
Sbjct: 180 ITSYSK--NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI 237

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS-LEDAKM 289
            D  TL ++L +   ++ L  G   H   + S + ++  V + L+ +YSK    + D + 
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 290 LFDKMSDKDRVVWNIMISAY--YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           +FD++S+ D V+WN MIS Y  Y+     E+LE    +   G R D  + +  +S+ S M
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYED-LSDEALECFRQLQVVGHRPDDCSLVCVISACSNM 356

Query: 348 KNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            +   G+Q+H   L+ +    ++SV+N+LI MY +C +L  A+ +FD++     VS++SM
Sbjct: 357 SSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSM 416

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLG 465
           I GY  H    ++L LF  M   G     +T I++L AC + G +E  K Y +    K G
Sbjct: 417 IAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFG 476

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           +   +   + +     + G +  A  L +    D      W++++ A   HG+     K 
Sbjct: 477 IEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFD-PGFFFWSALLGACRIHGNVELAIKA 535

Query: 526 YTQMKQSD 533
             ++ Q D
Sbjct: 536 ANRLLQLD 543



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 205/431 (47%), Gaps = 46/431 (10%)

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
           C   S NT L+S Y+K + +E A  LFD+M   D V +N +I+AY + G  + + +L + 
Sbjct: 72  CNVFSFNT-LISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M  +    D FT    +++     N+   +Q+HA  +  G D  VSV N+LI  Y +   
Sbjct: 131 MREAFLDMDGFTLSGIITACGI--NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGF 188

Query: 385 LNCARKIFDSV-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           L  AR+IF  + + +  VSW+SM+  Y+ H +  +AL L+ EM + G+ VD  T+ ++L 
Sbjct: 189 LKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLT 248

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-GCIEMAGELFDEEKIDSKD 502
           A  N+  L      H   +K G +  S V + +   Y+KC GC+    ++FDE  I + D
Sbjct: 249 AFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDE--ISNPD 306

Query: 503 IITWNSMISAYAKHGDWS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII- 560
           ++ WN+MIS Y+ + D S +  + + Q++    RPD  + + +++AC N     +GR + 
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVH 366

Query: 561 ----------------------------FKEMKESYGYEPSQE--HYASMVNLLGRAGHM 590
                                        ++ K  +   P      Y SM+    + G  
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 591 DEARELVK---DMPFKPDARVWGPLLSACKMHSETELAEL---TAEKLISMEPENAGNYV 644
            ++  L +   +M F P    +  +L+AC      E  ++     ++   +EPE AG++ 
Sbjct: 427 FQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPE-AGHFS 485

Query: 645 LLSNIYAAAGK 655
            + ++   AGK
Sbjct: 486 CMIDLLGRAGK 496



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 191/372 (51%), Gaps = 8/372 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNL 106
           ++Q+HA  ++  GL   + + + LI SY+  G L  ++++F+ ++   + + + +++   
Sbjct: 157 IRQLHALSVVT-GLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAY 215

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            +  E  K L +Y +M ++ +     T   V+ + + + D + G + HA+++K G+    
Sbjct: 216 MQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNS 275

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS-LAVQNGKSEKSFELFKLMR 225
            VG  L++ Y KC G   + + +           WN++IS  ++    S+++ E F+ ++
Sbjct: 276 HVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQ 335

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASL 284
           + G   D  +L+ ++ +   + S   GR VH +A+  D   + +SVN AL++MYSK  +L
Sbjct: 336 VVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNL 395

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
            DAK LFD M + + V +N MI+ Y Q G   +SL L   M+  GF     T I+ +++ 
Sbjct: 396 RDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAAC 455

Query: 345 STMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVV 401
           +    +E GK ++ N+++   G + +    + +ID+      L+ A ++ +++       
Sbjct: 456 AHTGRVEDGK-IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFF 514

Query: 402 SWSSMIKGYVTH 413
            WS+++     H
Sbjct: 515 FWSALLGACRIH 526



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 46/325 (14%)

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           FR  L T IA        +++  GK +HA  +++       + N  + +Y +C  L+ AR
Sbjct: 11  FRQFLKTCIAH-------RDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 390 KIFDSVKTKTV-------------------------------VSWSSMIKGYVTHDQSLE 418
           ++FD      V                               VS++++I  Y     +  
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPAC-VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           A +LF EM+   +++D  T+  I+ AC +N+G    ++ LH  S+  GL+S  SV  A+ 
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGL---IRQLHALSVVTGLDSYVSVGNALI 180

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
            SY+K G ++ A  +F     D +D ++WNSM+ AY +H + S+  +LY +M    +  D
Sbjct: 181 TSYSKNGFLKEARRIFHWLSED-RDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH-MDEAREL 596
           + T   +LTA  N   +  G     ++ +S GY  +    + +++L  + G  M + R++
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKS-GYHQNSHVGSGLIDLYSKCGGCMLDCRKV 298

Query: 597 VKDMPFKPDARVWGPLLSACKMHSE 621
             ++   PD  +W  ++S   ++ +
Sbjct: 299 FDEIS-NPDLVLWNTMISGYSLYED 322


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/596 (34%), Positives = 323/596 (54%), Gaps = 24/596 (4%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKC 179
           M     YP  + +P V++SC+ + D   GE +H  +++LG  FD +    +AL+  Y K 
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLY--TCNALMNMYSKF 58

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
              +  E+G +QR F D  S+    I    + GK   S +L   +    A  D    +N 
Sbjct: 59  ---WSLEEGGVQR-FCD--SKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQ 112

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           + + +          V+    V D  K   V +        L SL   + +F+ M  +D 
Sbjct: 113 MSNILYQ--------VNTYKKVFDEGKTSDVYSKKEKESYYLGSL---RKVFEMMPKRDI 161

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +IS   Q+G  +++L ++  M  +  R D FT  + +   +   N+  GK++H  
Sbjct: 162 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 221

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            +RNG D  V + +SLIDMY +C  ++ + ++F  +     +SW+S+I G V +    E 
Sbjct: 222 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 281

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L+ F +M +  ++ + V+  +I+PAC ++  L   K LHGY ++   +    + +A+   
Sbjct: 282 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 341

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG I  A  +FD  K++  D+++W +MI  YA HG       L+ +M+   V+P+ +
Sbjct: 342 YAKCGNIRTARWIFD--KMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYV 399

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
            F+ +LTAC +AGLV+E    F  M + Y   P  EHYA++ +LLGR G ++EA E + D
Sbjct: 400 AFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISD 459

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           M  +P   VW  LL+AC++H   ELAE  ++KL +++P+N G YVLLSNIY+AAG+W   
Sbjct: 460 MHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDA 519

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            K+R  +RD+G+KK P CSWIEI   VH F A D+SHP  D I   L +L LE ME
Sbjct: 520 RKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL-LEQME 574



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 132/261 (50%), Gaps = 1/261 (0%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF  +   + + + T++   ++ G +E  L++ ++M    + P   T   V+   +  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
           ++ + G++IH   ++ G+D+   +G +L++ Y KC    ++ +        D  S WNS+
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS-WNSI 268

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I+  VQNG  ++  + F+ M +   + +  +  +++ +   L +L LG+ +H   + S F
Sbjct: 269 IAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF 328

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             ++ + +AL+ MY+K  ++  A+ +FDKM   D V W  MI  Y   G   +++ L   
Sbjct: 329 DGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR 388

Query: 325 MVRSGFRADLFTAIAAVSSIS 345
           M   G + +    +A +++ S
Sbjct: 389 MEVEGVKPNYVAFMAVLTACS 409



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%), Gaps = 4/183 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y I +G   ++ + S+LID YA    +  S +VF  +   + + + +I+    +
Sbjct: 216 KEIHG-YAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQ 274

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G +++ L  ++QM +  + P   ++  ++ +C+ L     G+++H  +++  FD    +
Sbjct: 275 NGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFI 334

Query: 169 GDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             ALV+ Y KC G     + +  + +  D+ S W ++I     +G +  +  LFK M +E
Sbjct: 335 ASALVDMYAKC-GNIRTARWIFDKMELYDMVS-WTAMIMGYALHGHAYDAISLFKRMEVE 392

Query: 228 GAE 230
           G +
Sbjct: 393 GVK 395


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/518 (35%), Positives = 286/518 (55%), Gaps = 23/518 (4%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS--GTLINLLRSTVELKSLELGRIVHCV 258
           W   I +A   G    +  LF  MR   A   S   +L   L+S   L    LG  +H +
Sbjct: 17  WAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHAL 76

Query: 259 AVVSDFCKDLSVNTALLSMYSKL-------------------ASLEDAKMLFDKMSDKDR 299
           A+ S    D     ALL++Y KL                    +LE  + +FD+M ++D 
Sbjct: 77  AIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDV 136

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN ++    + G   E+L L+  M R GFR D FT  + +   +   +++ G ++H  
Sbjct: 137 VSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSEVHGF 196

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            +RNG D  V V +SLIDMY  C   + + K+FD++  +  + W+S++ G   +    EA
Sbjct: 197 AVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEA 256

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L +F  M   GV    VT  +++P C N+ +L   K LH Y ++ G      +++++   
Sbjct: 257 LGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDM 316

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KCG I +A  +FD  ++ S D+++W +MI  YA HG   +   L+ +M+  + +P+ I
Sbjct: 317 YCKCGEISIAHHIFD--RMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHI 374

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL +LTAC +AGLV++G   FK M + YG  P+ EH A++ ++LGRAG +DEA   +  
Sbjct: 375 TFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISK 434

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           M  KP A VW  LL AC++H  T LAE  A+K++ +EP + G++V+LSN+Y+A+G+WN  
Sbjct: 435 MQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEA 494

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
           A +R  +R +G+KK P CSWIE+   +H F A D+SHP
Sbjct: 495 AHLRKSMRKKGMKKDPACSWIEVKNKLHVFVAHDRSHP 532



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 206/409 (50%), Gaps = 27/409 (6%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM----ALQSMYPAEDTYPF 136
           +S+S+ V+     P  L +   ++  +  G +   + ++ +M    A +S  PA  + P 
Sbjct: 1   MSVSEAVYTPWPPP--LSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPA--SLPA 56

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM------- 189
            ++SC+ L     G  +HA  ++ G  +     +AL+  Y K    + +  G+       
Sbjct: 57  ALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTG 116

Query: 190 -------IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
                  +++ F ++  R    WN+L+    + G+  ++  L + M  EG   DS TL +
Sbjct: 117 SSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSS 176

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +L    E   ++ G  VH  AV + F  D+ V ++L+ MY+     + +  +FD +  +D
Sbjct: 177 VLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 236

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            ++WN +++   Q+G  +E+L +   M+++G R    T  + +     + ++ +GKQ+HA
Sbjct: 237 PILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHA 296

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            V+R G +  V + +SLIDMYC+C +++ A  IFD + +  VVSW++MI GY  H  + E
Sbjct: 297 YVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPARE 356

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGL 466
           AL LF  M+L   + + +T + +L AC + G ++   KY    S   G+
Sbjct: 357 ALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGI 405



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 33/352 (9%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +   + + + T++   ++ G + + L++ ++M  +   P   T   V+   +  
Sbjct: 125 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAEC 184

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D   G ++H   V+ GFD+   VG +L++ Y  C            + F +L  R    
Sbjct: 185 ADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANC-----TRTDYSVKVFDNLPVRDPIL 239

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+++   QNG  E++  +F+ M   G      T  +L+     L SL  G+ +H   +
Sbjct: 240 WNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 299

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  ++ ++++L+ MY K   +  A  +FD+M   D V W  MI  Y   G  +E+L 
Sbjct: 300 RGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALV 359

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN------- 373
           L   M     + +  T +A +++ S           HA ++  G  Y  S+ +       
Sbjct: 360 LFERMELGNAKPNHITFLAVLTACS-----------HAGLVDKGWKYFKSMSDHYGIVPT 408

Query: 374 -----SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQSLEA 419
                +L D+     +L+ A      ++ K   S WS++++    H  ++ A
Sbjct: 409 LEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLA 460



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 123/269 (45%), Gaps = 4/269 (1%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C + +   ++H  + + +G   ++ + S+LID YAN      S +VF+++   + +L+ +
Sbjct: 184 CADVKRGSEVHG-FAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNS 242

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +L   ++ G  E+ L ++++M    + P   T+  +I  C  L     G+++HA V++ G
Sbjct: 243 VLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGG 302

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
           F+    +  +L++ Y KC G       +  R        W ++I     +G + ++  LF
Sbjct: 303 FEDNVFISSSLIDMYCKC-GEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLF 361

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           + M +  A+ +  T + +L +      ++ G +    ++        L    AL  +  +
Sbjct: 362 ERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILGR 421

Query: 281 LASLEDAKMLFDKMSDKDRV-VWNIMISA 308
              L++A     KM  K    VW+ ++ A
Sbjct: 422 AGELDEAYNFISKMQIKPTASVWSTLLRA 450


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/551 (33%), Positives = 303/551 (54%), Gaps = 40/551 (7%)

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
            +N++I+   Q+ +   +      M  +    ++ +  + L +    K    G  VH +  
Sbjct: 860  YNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVS 919

Query: 261  VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             S   KD+ + +ALL MY+K    E+A+ +F+ M +++ V WN +I+ Y Q+G   E+L 
Sbjct: 920  KSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALV 979

Query: 321  LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNSLIDMY 379
            L + M+++GF  D  T  + +S+ + +     G+Q+HA V+++    + + + N+L+DMY
Sbjct: 980  LFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMY 1039

Query: 380  CECEDLNCARKIFDSVKTKTVVS-------------------------------WSSMIK 408
             +C     AR +FD + +++VVS                               W+ +I 
Sbjct: 1040 AKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIA 1099

Query: 409  GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE-----HVKYL-HGYSM 462
             Y  + +  EALRLF  +K E V     T  N+L AC N+  L+     HV  L  G+  
Sbjct: 1100 AYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRF 1159

Query: 463  KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
              G  S   V  ++   Y K G I+   ++F  E++ ++D ++WN+MI  +A++G     
Sbjct: 1160 DFGPESDVFVGNSLVDMYLKTGSIDDGAKVF--ERMAARDNVSWNAMIVGHAQNGRAKDA 1217

Query: 523  FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
              L+ +M  S   PD +T +G+L+AC ++GLVEEGR  F+ M E +G  PSQ+HY  M++
Sbjct: 1218 LHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMID 1277

Query: 583  LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
            LLGRAGH+ E  EL+K+M  +PDA +W  LL +C++H   E+ E  A KL  ++P N+G 
Sbjct: 1278 LLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGP 1337

Query: 643  YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            YVLLSN+YA  GKW  V ++R+ ++ RG+ K PGCSWIEIG+ V  F A D  HP  + I
Sbjct: 1338 YVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFLARDNGHPCKNEI 1397

Query: 703  YTILGILELEI 713
            + IL I+++++
Sbjct: 1398 HAILRIIQMQM 1408



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 153/620 (24%), Positives = 277/620 (44%), Gaps = 54/620 (8%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            L +  I+S A  G ++ ++++F+ +   +   +  I+   S+ G   + L ++  M   
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC----DG 181
            + P + T   V+  C+  LD     ++H  + K  F S   +G ALV+ Y  C    D 
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 182 GFENEKGMIQRKFKDL----KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
                    +R F D+       WN ++      G  + + ++F  M   G      T+ 
Sbjct: 206 ---------RRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVS 256

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE------------ 285
           + + +  +  +LE GR +H   +   +   + V ++++ MY+K  +++            
Sbjct: 257 HAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316

Query: 286 -------------------DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
                              DAK +F+ M +++ V WN M++ Y +S     +L L   M 
Sbjct: 317 DMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMR 376

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           +     D  T  + +S+ + + +I  G+++HA  ++ G      + N+L+ MY +C  L 
Sbjct: 377 QETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLR 436

Query: 387 CARK--IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            A +  +F+    +   SW+S+I GY  H  S  AL   ++M+ E V  +  T  + L A
Sbjct: 437 SAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAA 495

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C NI  L+    +H Y ++ G      + + +   Y KC   + +  +F  E   S+D+I
Sbjct: 496 CANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIF--EARPSRDVI 553

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WNSMI   A  G       L+ +M++  ++ D +TFLG L +C++ G V  GR  F  M
Sbjct: 554 LWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLM 613

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            +     P  EHY  M+ LLG+ G M E  + V+ MPF+P   +W  +   C+ +   +L
Sbjct: 614 MDE-SIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKL 672

Query: 625 AELTAEKLISMEPENAGNYV 644
            E  A+ +    P     +V
Sbjct: 673 GERAAKCINDSNPLTPVQFV 692



 Score =  172 bits (435), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 132/516 (25%), Positives = 239/516 (46%), Gaps = 54/516 (10%)

Query: 53   ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
            AR +     H N    + L+ ++A LG  + ++ +F++I  P+   Y  ++  L++    
Sbjct: 814  ARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRG 873

Query: 113  EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
               LL    M          ++   + +C+   D  +G ++HA V K        +G AL
Sbjct: 874  ADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSAL 933

Query: 173  VEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++ Y KC+   E      +R F+ +  R    WNSLI+   QNG   ++  LF  M   G
Sbjct: 934  LDMYAKCEWPEE-----ARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAG 988

Query: 229  AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSKL------ 281
               D  TL +++ +   L +   GR VH   V SD F +D+ ++ AL+ MY+K       
Sbjct: 989  FVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAA 1048

Query: 282  -------------------------ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
                                     A++EDA+M+F +M +K+ + WN++I+AY Q+G  +
Sbjct: 1049 RCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEE 1108

Query: 317  ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN------GSDYQVS 370
            E+L L + + R       +T    +++   + +++ G+Q H +VL+       G +  V 
Sbjct: 1109 EALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVF 1168

Query: 371  VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
            V NSL+DMY +   ++   K+F+ +  +  VSW++MI G+  + ++ +AL LF  M    
Sbjct: 1169 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSK 1228

Query: 431  VEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
               D VT+I +L AC + G +E   +Y    +   G+       T +     + G ++  
Sbjct: 1229 ESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEV 1288

Query: 490  GELFDEEKIDSKDIITWNSMISAYAKH-----GDWS 520
             EL  E  ++  D + W S++ +   H     G+W+
Sbjct: 1289 EELIKEMSME-PDAVLWASLLGSCRLHKNVEMGEWA 1323



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 219/457 (47%), Gaps = 47/457 (10%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           L+LC      +Q+H  +I       N+IL + L+D Y N  LL+ +++ F+ I  PN++ 
Sbjct: 165 LDLCG----ARQLHG-HIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAIS 219

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           +  I++     G  +  + ++ +M    + P   T    + +C        G  IHA V+
Sbjct: 220 WNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVL 279

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---------------------------Q 191
           + G++    V  ++V+ Y KC G  +  + +                            +
Sbjct: 280 RHGYEHHVHVRSSVVDMYAKC-GAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAK 338

Query: 192 RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
           R F+ +K R    WN++++  +++     +  LF+ MR E  EFD+ TL ++L +   + 
Sbjct: 339 RVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGIL 398

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK--MLFDKMSDKDRVVWNIM 305
            +  G  VH  A+   F     +  AL+ MYSK   L  A+  +LF+  S++D   WN +
Sbjct: 399 DIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSL 458

Query: 306 ISAYYQSGFPKESLELLMCMVR--SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
           IS Y +    + +L  L  M    +  ++   +A+AA ++I  +K    G Q+HA ++R 
Sbjct: 459 ISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQ---GMQIHAYMIRK 515

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +    + + LIDMYC+C   + + +IF++  ++ V+ W+SMI G     +    L LF
Sbjct: 516 GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLF 575

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            EM+ +G++ D VT +  L +C++ G   HV+    Y
Sbjct: 576 DEMQKQGIKADSVTFLGALVSCISEG---HVRLGRSY 609



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 204/431 (47%), Gaps = 38/431 (8%)

Query: 272  TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             ALLS +++L    DA+ LF  + D D+  +N +I+A  Q     ++L  L  M    F 
Sbjct: 830  NALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFV 889

Query: 332  ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
             + ++  +A+S+ +  K+   G Q+HA V ++     V + ++L+DMY +CE    AR++
Sbjct: 890  LNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRV 949

Query: 392  FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            F+++  + +VSW+S+I  Y  +    EAL LF  M   G   D VT+ +++ AC  + A 
Sbjct: 950  FEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAAD 1009

Query: 452  EHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE--------------- 495
               + +H   +K         ++ A+   YAKCG    A  +FD                
Sbjct: 1010 REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITG 1069

Query: 496  --------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
                           ++  K++I WN +I+AYA++G+  +  +L+ ++K+  V P   T+
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129

Query: 542  LGLLTACVNAGLVEEGRIIFKE-MKESYGYE--PSQEHYA--SMVNLLGRAGHMDEAREL 596
              +L AC N   ++ G+      +KE + ++  P  + +   S+V++  + G +D+  ++
Sbjct: 1130 GNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189

Query: 597  VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
             + M  + D   W  ++     +   + A    E+++    + + + V +  + +A G  
Sbjct: 1190 FERMAAR-DNVSWNAMIVGHAQNGRAKDALHLFERMLC--SKESPDSVTMIGVLSACGHS 1246

Query: 657  NGVAKMRTFLR 667
              V + R + R
Sbjct: 1247 GLVEEGRRYFR 1257



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 154/346 (44%), Gaps = 44/346 (12%)

Query: 50   QIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            Q+HA  ++    H +++ + S L+D YA       +++VF ++   N + + +++    +
Sbjct: 913  QVHA--LVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQ 970

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD- 167
             G   + L+++  M      P E T   V+ +C+ L     G ++HA+VVK   D F + 
Sbjct: 971  NGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVK--SDRFRED 1028

Query: 168  --VGDALVEFYIKC------------------------------DGGFENEKGMIQRKFK 195
              + +ALV+ Y KC                                  E+ + +  +  +
Sbjct: 1029 MVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVE 1088

Query: 196  DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                 WN LI+   QNG+ E++  LF  ++ E       T  N+L +   +  L+LG+  
Sbjct: 1089 KNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQA 1148

Query: 256  HCVAVVSDFC------KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            H   +   F        D+ V  +L+ MY K  S++D   +F++M+ +D V WN MI  +
Sbjct: 1149 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGH 1208

Query: 310  YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
             Q+G  K++L L   M+ S    D  T I  +S+      +E G++
Sbjct: 1209 AQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRR 1254


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 200/548 (36%), Positives = 302/548 (55%), Gaps = 47/548 (8%)

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           KD+ S WN+++S   QNG  E++ ++F  M ++     +G    LL + V+   +E  R 
Sbjct: 151 KDVVS-WNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG----LLSAYVQNGRIEDARR 205

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +      S    ++     L+  Y +   L+DA+ LFD+M  +D++ WNIMI+ Y Q+G 
Sbjct: 206 L----FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGL 261

Query: 315 PKESLELL-----------MCMVRSGFRAD--LFTAIAAVSSISTMKNIEWGKQMHANVL 361
             E+  L              MV SGF  +  L  A      +     + W   +   V 
Sbjct: 262 LSEARRLFEELPIRDVFAWTAMV-SGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQ 320

Query: 362 ----------------RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
                           RN S +     N+++  Y +C +++ A+ +FD +  +  +SW++
Sbjct: 321 SQQIEKARELFDQMPSRNTSSW-----NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI GY    QS EAL LF +MK +G  ++   +   L +C  I ALE  K LHG  +K G
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG 435

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             +      A+   Y KCG IE A ++F  E I  KDI++WN+MI+ YA+HG   +   L
Sbjct: 436 FQTGYIAGNALLAMYGKCGSIEEAFDVF--EDITEKDIVSWNTMIAGYARHGFGKEALAL 493

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  MK + ++PD +T +G+L+AC + G V++G   F  M ++YG   + +HY  M++LLG
Sbjct: 494 FESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLG 552

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG +DEA  L+K MPF PDA  WG LL A ++H +TEL E  AEK+  MEP+N+G YVL
Sbjct: 553 RAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVL 612

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           LSN+YAA+G+W  V +MR+ +RD+G+KK PG SW+EI    H F   D SHP+A+ IY  
Sbjct: 613 LSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAY 672

Query: 706 LGILELEI 713
           L  L+LE+
Sbjct: 673 LEELDLEL 680



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 204/453 (45%), Gaps = 63/453 (13%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--- 256
           +WN  IS  ++ G+ E +  +F  MR               RSTV   ++  G + +   
Sbjct: 62  KWNRKISAYMRKGQCESALSVFNGMRR--------------RSTVTYNAMISGYLSNNKF 107

Query: 257 -CVAVVSDFC--KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            C   V +    +DL     +LS Y K  +L  A+ LF++M +KD V WN M+S + Q+G
Sbjct: 108 DCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNG 167

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
           F +E+ ++   M+      +  +    +S+      IE  +++  + +    D+++   N
Sbjct: 168 FVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKM----DWEIVSWN 219

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-- 431
            L+  Y   + L+ AR +FD +  +  +SW+ MI GY  +    EA RLF E+ +  V  
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA 279

Query: 432 -------------------------EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
                                    E + V+   ++   V    +E  + L     ++  
Sbjct: 280 WTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFD---QMPS 336

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            + SS NT +   YA+CG I+ A  LFDE  +  +D I+W +MIS YA+ G   +   L+
Sbjct: 337 RNTSSWNTMV-TGYAQCGNIDQAKILFDE--MPQRDCISWAAMISGYAQSGQSEEALHLF 393

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +MK+     +       L++C     +E G+ +   + ++ G++       +++ + G+
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGK 452

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            G ++EA ++ +D+  K D   W  +++    H
Sbjct: 453 CGSIEEAFDVFEDITEK-DIVSWNTMIAGYARH 484



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 164/356 (46%), Gaps = 34/356 (9%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I  YA  GLLS ++++F  +   +   +  ++    + G  ++   ++++M      P 
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM------PE 305

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG-------DALVEFYIKCDGGF 183
           ++   +           I+G  + +Q ++   + FD +        + +V  Y +C G  
Sbjct: 306 KNEVSWNA--------MIAG-YVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQC-GNI 355

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           +  K +    F ++  R    W ++IS   Q+G+SE++  LF  M+ +G   +   L   
Sbjct: 356 DQAKIL----FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L S  E+ +LELG+ +H   V + F        ALL+MY K  S+E+A  +F+ +++KD 
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN MI+ Y + GF KE+L L   M +   + D  T +  +S+ S    ++ G +   +
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNS 530

Query: 360 VLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTH 413
           + +N G       +  +ID+      L+ A  +  S+       +W +++     H
Sbjct: 531 MYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIH 586



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 160/356 (44%), Gaps = 49/356 (13%)

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           D D V WN  ISAY + G  + +L +   M R        T  A +S   +    +  ++
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRR----STVTYNAMISGYLSNNKFDCARK 112

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
               V     D  +   N ++  Y +  +L+ AR +F+ +  K VVSW++M+ G+  +  
Sbjct: 113 ----VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EA ++F +M ++    + ++   +L A V  G +E  + L    M   + S +     
Sbjct: 169 VEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWN----C 220

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y +   ++ A  LFD  ++  +D I+WN MI+ YA++G  S+  +L+ ++   DV 
Sbjct: 221 LMGGYVRKKRLDDARSLFD--RMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV- 277

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKES---------YGYEPSQE----------- 575
                +  +++  V  G+++E   IF+EM E           GY  SQ+           
Sbjct: 278 ---FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334

Query: 576 ------HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
                  + +MV    + G++D+A+ L  +MP + D   W  ++S      ++E A
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP-QRDCISWAAMISGYAQSGQSEEA 389



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 95/201 (47%), Gaps = 19/201 (9%)

Query: 49  QQIH-ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           QQI  AR +      +N    + ++  YA  G +  ++ +F+ +   + + +  ++   +
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G+ E+ L ++ +M               + SC+ +     G+++H ++VK GF +   
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI 441

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKF--------KDLKSRWNSLISLAVQNGKSEKSFE 219
            G+AL+  Y KC        G I+  F        KD+ S WN++I+   ++G  +++  
Sbjct: 442 AGNALLAMYGKC--------GSIEEAFDVFEDITEKDIVS-WNTMIAGYARHGFGKEALA 492

Query: 220 LFKLMRMEGAEFDSGTLINLL 240
           LF+ M+M   + D  TL+ +L
Sbjct: 493 LFESMKMT-IKPDDVTLVGVL 512



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   +DS DI+ WN  ISAY + G       ++  M+    R   +T+  +++  ++   
Sbjct: 52  DSTIVDS-DIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMISGYLSNNK 106

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLG--RAGHMDEARELVKDMPFKPDARVWGP 611
            +  R +F++M       P ++  +  V L G  + G++  AR L   MP K D   W  
Sbjct: 107 FDCARKVFEKM-------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK-DVVSWNA 158

Query: 612 LLSACKMHSETELAELTAEKLI 633
           +LS    +   E A    ++++
Sbjct: 159 MLSGFAQNGFVEEARKIFDQML 180


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 290/524 (55%), Gaps = 11/524 (2%)

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
            WNS+I+   + G S ++   F  +R  G      +    ++S   L  L  GR+ H  A 
Sbjct: 1110 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 1169

Query: 261  VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            V  F  DL V++AL+ MYSK   L+DA+ LFD++  ++ V W  MI+ Y Q+     +L 
Sbjct: 1170 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229

Query: 321  LLMCMVR--------SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
            L    +         +    D    ++ +S+ S +      + +H  V++ G D  + V 
Sbjct: 1230 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 1289

Query: 373  NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGV 431
            N+L+D Y +C     ++K+FD ++ K  +SW+SMI  Y     S EAL +F  M +  GV
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 432  EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
              + VT+  +L AC + GAL   K +H   +K+ L     V T+I   Y KCG +EMA +
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409

Query: 492  LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
             FD  ++  K++ +W +M++ Y  HG   +   ++ +M ++ V+P+ ITF+ +L AC +A
Sbjct: 1410 TFD--RMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 1467

Query: 552  GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
            GLVEEG   F  MK  Y  EP  EHY  MV+L GRAG ++EA  L+K M  KPD  VWG 
Sbjct: 1468 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 1527

Query: 612  LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
            LL AC++H   +L E+ A+KL  ++P+N G YVLLSN+YA AG+W  V +MR  +++R L
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQL 1587

Query: 672  KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
             K PG S +E+   VH F   D+ HP  + IY  L  L LE+ +
Sbjct: 1588 VKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQK 1631



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 202/393 (51%), Gaps = 36/393 (9%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           LL++    K L   R +H   + S    D  +   L+ +YS    +  A +LF ++ +  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN++I A   +G  +++L L   MV  G  AD FT    + + +   +I+ GK +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 359 NVLRNGSDYQVSVHNSLIDMY-------------------------------CECEDLNC 387
           ++++ G    V V N+LID Y                                 C DL  
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           AR+IFD + +K VVSW++MI GY+ + Q  EAL LF  M+ E +  +  T+++++ AC  
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +G L   + +H Y++K  +     + TA+   Y+KCG I+ A E+F  E +  K + TWN
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF--ETMPRKSLPTWN 327

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           SMI++   HG   +   L+++M++ +V+PD ITF+G+L ACV+   V+EG   F  M + 
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           YG  P  EHY  M  L  R+ ++DEA +  K++
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 222/453 (49%), Gaps = 28/453 (6%)

Query: 82   SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
            +L+   +  +   N   + +++ +L++ G+  + L  +  +    + P   ++P  I+SC
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 142  SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR- 200
            S L D +SG   H Q    GF++   V  AL++ Y KC G  ++ + +    F ++  R 
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC-GQLKDARAL----FDEIPLRN 1207

Query: 201  ---WNSLISLAVQNGKSEKSFELFKLMRMEGAE--------FDSGTLINLLRSTVELKSL 249
               W S+I+  VQN +++ +  LFK    E  E         DS  ++++L +   +   
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 250  ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             +   VH   V   F   + V   L+  Y+K      +K +FD M +KD + WN MI+ Y
Sbjct: 1268 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY 1327

Query: 310  YQSGFPKESLELLMCMVRS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
             QSG   E+LE+   MVR  G R +  T  A + + +    +  GK +H  V++   +Y 
Sbjct: 1328 AQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYN 1387

Query: 369  VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
            V V  S+IDMYC+C  +  A+K FD +K K V SW++M+ GY  H ++ EAL +F +M  
Sbjct: 1388 VCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR 1447

Query: 429  EGVEVDFVTIINILPACVNIGALEHVKYL-----HGYSMKLGLNSLSSVNTAIFISYAKC 483
             GV+ +++T +++L AC + G +E   +      H Y ++ G+         +   + + 
Sbjct: 1448 AGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYG----CMVDLFGRA 1503

Query: 484  GCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            GC+  A  L    K+   D + W S++ A   H
Sbjct: 1504 GCLNEAYNLIKRMKM-KPDFVVWGSLLGACRIH 1535



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 185/357 (51%), Gaps = 31/357 (8%)

Query: 27  RPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           R ++ A  +  LL  C+N +HL+QIHA+ II  GL  + +L+  LI  Y+  G ++ +  
Sbjct: 22  RGNIRAKKALFLLQNCKNFKHLRQIHAK-IIRSGLSNDQLLTRKLIHLYSTHGRIAYAIL 80

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           +F  I +P +  +  I++  +  G  E+ L++YK M  Q +   + T+PFVI++C+  L 
Sbjct: 81  LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG------FENEK------------G 188
              G+ +H  ++K GF     V + L++FY KC         FE  +            G
Sbjct: 141 IDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISG 200

Query: 189 MI--------QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
           +I        +R F ++ S+    W ++I+  ++N + E++ ELFK M+ E    +  T+
Sbjct: 201 LISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTM 260

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           ++L+++  E+  L LGR +H  A+ +     + + TAL+ MYSK  S++DA  +F+ M  
Sbjct: 261 VSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPR 320

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           K    WN MI++    G  +E+L L   M R   + D  T I  + +   +KN++ G
Sbjct: 321 KSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 151/341 (44%), Gaps = 39/341 (11%)

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           +Y    FP +++ L     R   RA       A+  +   KN +  +Q+HA ++R+G   
Sbjct: 6   SYTHDVFPSKNIPL---TPRGNIRAK-----KALFLLQNCKNFKHLRQIHAKIIRSGLSN 57

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
              +   LI +Y     +  A  +F  ++     +W+ +I+    +  S +AL L+  M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            +G+  D  T   ++ AC N  +++  K +HG  +K G +    V   +   Y KCG   
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 488 MAGELFDE-----------------------------EKIDSKDIITWNSMISAYAKHGD 518
            A ++F++                             ++I SK++++W +MI+ Y ++  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
             +  +L+ +M+  ++ P+  T + L+ AC   G++  GR I     ++   E       
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGT 296

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +++++  + G + +A E+ + MP K     W  ++++  +H
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVH 336



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 127/259 (49%), Gaps = 8/259 (3%)

Query: 55   YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
            +++  G   ++ + + L+D+YA  G   +S++VF+ +   + + + +++   ++ G   +
Sbjct: 1276 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGE 1335

Query: 115  TLLVYKQMA--LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
             L V+  M   +   Y A  T   V+ +C+      +G+ IH QV+K+  +    VG ++
Sbjct: 1336 ALEVFHGMVRHVGVRYNAV-TLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394

Query: 173  VEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            ++ Y KC G  E  K    R K K++KS W ++++    +G+++++ ++F  M   G + 
Sbjct: 1395 IDMYCKC-GRVEMAKKTFDRMKEKNVKS-WTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452

Query: 232  DSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T +++L +      +E G    + +    D    +     ++ ++ +   L +A  L
Sbjct: 1453 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 1512

Query: 291  FDKMSDK-DRVVWNIMISA 308
              +M  K D VVW  ++ A
Sbjct: 1513 IKRMKMKPDFVVWGSLLGA 1531


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 292/526 (55%), Gaps = 7/526 (1%)

Query: 194 FKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           FK L+S     W S+I          ++   F  MR  G   D     ++L+S   +  L
Sbjct: 62  FKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             G  VH   V      DL    AL++MYSKL  ++  + +F+ M  KD V +N +I+ Y
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGY 181

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            QSG  +++L ++  M  S  + D FT  + +   S   ++  GK++H  V+R G D  V
Sbjct: 182 AQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDV 241

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            + +SL+DMY +   +  + ++F  +  +  +SW+S++ GYV + +  EALRLF +M   
Sbjct: 242 YIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSA 301

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            V    V   +++PAC ++  L   K LHGY ++ G      + +A+   Y+KCG I+ A
Sbjct: 302 KVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAA 361

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            ++FD  +++  D ++W ++I  +A HG   +   L+ +MK+  V+P+ + F+ +LTAC 
Sbjct: 362 RKIFD--RMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 419

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           + GLV+E    F  M + YG     EHYA++ +LLGRAG ++EA + +  M  +P   VW
Sbjct: 420 HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVW 479

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
             LLS+C +H   ELAE  AEK+ +++ EN G YVL+ N+YA+ G+W  +AK+R  +R +
Sbjct: 480 STLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKK 539

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           GL+K P CSWIE+    H F + D+SHP  D I   L  + +E ME
Sbjct: 540 GLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAV-MEQME 584



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 245/484 (50%), Gaps = 11/484 (2%)

Query: 40  NLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            L +NP  ++      Q+HA++I    L      +S +I  Y NL LL  +  VF ++ S
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTS--ASIVISIYTNLKLLHEALLVFKTLES 67

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           P  L + ++++  +    + + L  + +M      P  + +P V++SC+ ++D   GE +
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  +V+LG D     G+AL+  Y K  G     K       KD+ S +N++I+   Q+G 
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVS-YNTVIAGYAQSGM 186

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            E +  + + M     + D+ TL ++L    E   +  G+ +H   +      D+ + ++
Sbjct: 187 YEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSS 246

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+ MY+K A +ED++ +F  +  +D + WN +++ Y Q+G   E+L L   MV +  R  
Sbjct: 247 LVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPG 306

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
                + + + + +  +  GKQ+H  VLR G    + + ++L+DMY +C ++  ARKIFD
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFD 366

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +     VSW+++I G+  H    EA+ LF EMK +GV+ + V  + +L AC ++G ++ 
Sbjct: 367 RMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 426

Query: 454 V-KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
              Y +  +   GLN       A+     + G +E A +   + +++    + W++++S+
Sbjct: 427 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSV-WSTLLSS 485

Query: 513 YAKH 516
            + H
Sbjct: 486 CSVH 489



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 188/382 (49%), Gaps = 5/382 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            L+++   +KS    + +H   + +      S +  ++S+Y+ L  L +A ++F  +   
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESP 68

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
             + W  +I  +        +L   + M  SG   D     + + S + M ++ +G+ +H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             ++R G D  +   N+L++MY +   ++  RK+F+ +  K VVS++++I GY       
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYE 188

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +ALR+  EM    ++ D  T+ ++LP       +   K +HGY ++ G++S   + +++ 
Sbjct: 189 DALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLV 248

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK   IE +  +F    +  +D I+WNS+++ Y ++G +++  +L+ QM  + VRP 
Sbjct: 249 DMYAKSARIEDSERVFSH--LYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPG 306

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            + F  ++ AC +   +  G+ +   +    G+  +    +++V++  + G++  AR++ 
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGRNIFIASALVDMYSKCGNIQAARKIF 365

Query: 598 KDMPFKPDARVWGPLLSACKMH 619
             M    D   W  ++    +H
Sbjct: 366 DRMNLH-DEVSWTAIIMGHALH 386


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/554 (33%), Positives = 308/554 (55%), Gaps = 35/554 (6%)

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELG 252
           F+D  S WN  IS     G    +  ++KLM  + A   +  T   +L    + + ++LG
Sbjct: 99  FRDGVS-WNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLG 157

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM------------------ 294
           R ++   +   F  D+ V + L+ MY+KL  + DAK  FD+M                  
Sbjct: 158 RQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRC 217

Query: 295 -------------SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
                         ++D + W IMI+   Q+G  +E+L++   M  +GF  D FT  + +
Sbjct: 218 GMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVL 277

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
           ++  ++  +  GKQ+HA V+R      V V ++L+DMY +C  +  A  +F  +  K V+
Sbjct: 278 TACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVI 337

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW++M+ GY  +  S EA+++F EM+  GVE D  T+ +++ +C N+ +LE     H  +
Sbjct: 338 SWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRA 397

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +  GL S  +V+ A+   Y KCG  E +  LF E  I  +D ++W ++++ YA+ G  ++
Sbjct: 398 LVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNI--RDEVSWTALLAGYAQFGKANE 455

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ +M    ++PD +TF+G+L+AC  AGLVE+G   F+ M + +G  P  +H   ++
Sbjct: 456 TIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCII 515

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +LLGRAG ++EAR  + +MP  PD   W  LLS+C++H + E+ +  A+ LI++EP+N  
Sbjct: 516 DLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPA 575

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
           +YVLLS++YA+ GKW+ VA++R  +RD+ ++K PG SWI+    VH F A DQS P    
Sbjct: 576 SYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQ 635

Query: 702 IYTILGILELEIME 715
           IY  L  L  +++E
Sbjct: 636 IYAELEKLNYKMIE 649



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 147/549 (26%), Positives = 256/549 (46%), Gaps = 70/549 (12%)

Query: 37  SLLNLC---ENPQHLQQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           SLL LC   +N    +++H   +IL  + Q    LS+NLI +Y  LG L+ +  VF+ I 
Sbjct: 10  SLLKLCCESQNQTQAKKLHC--LILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ----------------SMYPAEDTYPF 136
            PN   + TIL   SK G   +   ++  M  +                S   A   Y  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 137 VIRSCSCLLDFIS----------------GEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           +++  +  L+ I+                G +I+ Q++K GF S   VG  LV+ Y K  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 181 GGFENEK-----------------------GMI---QRKFKDLKSR----WNSLISLAVQ 210
             ++ ++                       GMI   QR F  LK R    W  +I+  +Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           NG   ++ ++F+ MR+ G   D  T  ++L +   L +L  G+ +H   + +D   ++ V
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            +AL+ MYSK  S++ A+ +F +M  K+ + W  M+  Y Q+GF +E++++   M R+G 
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV 367

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D FT  + +SS + + ++E G Q H   L +G    ++V N+LI +Y +C     + +
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHR 427

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +F  +  +  VSW++++ GY    ++ E + LF  M   G++ D VT I +L AC   G 
Sbjct: 428 LFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGL 487

Query: 451 LEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +E  ++Y      + G+  +    T I     + G +E A    +       D++ W ++
Sbjct: 488 VEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHP-DVVGWATL 546

Query: 510 ISAYAKHGD 518
           +S+   HGD
Sbjct: 547 LSSCRVHGD 555



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/501 (21%), Positives = 216/501 (43%), Gaps = 73/501 (14%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +LL+   E ++    + +HC+ + +    +  ++  L++ Y KL +L  A  +FD +   
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQP 69

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTAIAAVS-------------- 342
           +   WN ++S Y + G   +  ++   M  R G   +L  AI+  +              
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNL--AISGYANYGSCSDAVRVYKL 127

Query: 343 ------------SISTM-------KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
                       + STM       + ++ G+Q++  +L+ G    V V + L+DMY +  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 384 DLNCARKIFDSVKTKTVV-------------------------------SWSSMIKGYVT 412
            +  A++ FD +  + VV                               SW+ MI G + 
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +    EAL +F EM+L G  +D  T  ++L AC ++ AL   K +H Y ++        V
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   Y+KC  I+ A  +F  +++  K++I+W +M+  Y ++G   +  K++ +M+++
Sbjct: 308 GSALVDMYSKCRSIKSAETVF--KRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRN 365

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            V PD  T   ++++C N   +EEG         S G         +++ L G+ G  + 
Sbjct: 366 GVEPDDFTLGSVISSCANLASLEEGAQFHCRALVS-GLISFITVSNALITLYGKCGSTEN 424

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS--MEPENAGNYVLLSNIY 650
           +  L  +M  + D   W  LL+      +        E++++  ++P+      +LS   
Sbjct: 425 SHRLFTEMNIR-DEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACS 483

Query: 651 AAAGKWNGVAKMRTFLRDRGL 671
            A     G+    + +++ G+
Sbjct: 484 RAGLVEKGLQYFESMIKEHGI 504


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 314/573 (54%), Gaps = 13/573 (2%)

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
           G   K LL+++QM    + P   T+P V ++CS LL+    + +H  VVK  F +   V 
Sbjct: 33  GYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQ 92

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
            ++V+ Y+KC     ++ G     F  +  R    WNS+I    Q G  ++   LF  M 
Sbjct: 93  TSVVDMYVKC-----SQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMG 147

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           +EG   DS T+I L  S + LK L++   +H   +      D+SV+   ++ Y+K     
Sbjct: 148 IEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFG 207

Query: 286 DAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
            A+ +FD +    K  V WN MI+ Y       +++     M+  GFRADL T ++ +SS
Sbjct: 208 LAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSS 267

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
               + +  GK +HA+ ++ G D  + V N+LI MY +C D+  AR +FD++  KT VSW
Sbjct: 268 CVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSW 327

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++MI G        EA+ LFS M+  G + D VTII+++  C   GALE  K++  Y+  
Sbjct: 328 TAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATA 387

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL     V  A+   YAKCG ++ A ELF    +  K +++W ++I+  A +G++ +  
Sbjct: 388 NGLKDNLMVCNALIDVYAKCGSMDNARELF--YTMPEKSLVSWTTLIAGCALNGEFKEAL 445

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+ QM +  ++P+ ITFL +L AC +AG +E+G   F  M + Y   P  +HY+ M +L
Sbjct: 446 GLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADL 505

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGR G + EA E +++MPFKPD  +W  LLSACK+H    + E  A  L  +EP+ A  Y
Sbjct: 506 LGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPY 565

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           V ++NIYA+AGKW+ VA +RT ++     K+ G
Sbjct: 566 VQMANIYASAGKWDRVAAIRTMMKCNKAMKSSG 598



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/425 (31%), Positives = 223/425 (52%), Gaps = 6/425 (1%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           ++WNS I+ +V  G + K+  LF+ M+  G E ++ T  ++ ++  +L +L+  +IVH  
Sbjct: 20  AQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTH 79

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            V S F  DL V T+++ MY K + L  A  LF +M  +D   WN MI  + Q GF    
Sbjct: 80  VVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRV 139

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + L   M   G RAD  T I    S  ++K+++  + +H+  ++ G D  VSV N+ I  
Sbjct: 140 VSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAA 199

Query: 379 YCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           Y +C +   A  +FD +    KT VSW+SMI GY   +Q  +A+  F +M   G   D  
Sbjct: 200 YAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLS 259

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           TI+++L +CV    L H K +H + +++G +S   V   +   Y+KCG I  A  LFD  
Sbjct: 260 TILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDN- 318

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            +  K  ++W +MI+  A+ GD  +   L++ M+    +PDL+T + L++ C   G +E 
Sbjct: 319 -MLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALEL 377

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+ I      + G + +     +++++  + G MD AREL   MP K     W  L++ C
Sbjct: 378 GKWI-DTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS-WTTLIAGC 435

Query: 617 KMHSE 621
            ++ E
Sbjct: 436 ALNGE 440



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 214/437 (48%), Gaps = 17/437 (3%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P N T P +    S  LLNL    ++ Q +H  +++      +L + ++++D Y     L
Sbjct: 52  PNNLTFPSVAKACS-KLLNL----KYSQIVHT-HVVKSRFQADLFVQTSVVDMYVKCSQL 105

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
             +  +F+ +   +   + +++   ++ G  ++ + ++ +M ++ +     T   +  S 
Sbjct: 106 GFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSA 165

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF----KDL 197
             L D    E IH+  +K+G D+   V +  +  Y KC      E G+ +  F    K L
Sbjct: 166 LSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKC-----GEFGLAETVFDGIDKGL 220

Query: 198 KS--RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           K+   WNS+I+      +  K+   FK M   G   D  T+++LL S V+ + L  G+++
Sbjct: 221 KTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLI 280

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +      D+ V   L+SMYSK   +  A+ LFD M  K RV W  MI+   + G  
Sbjct: 281 HAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDL 340

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            E++ L   M   G + DL T I+ +S       +E GK +      NG    + V N+L
Sbjct: 341 DEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNAL 400

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           ID+Y +C  ++ AR++F ++  K++VSW+++I G   + +  EAL LF +M   G++ + 
Sbjct: 401 IDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNH 460

Query: 436 VTIINILPACVNIGALE 452
           +T + +L AC + G LE
Sbjct: 461 ITFLAVLQACNHAGFLE 477



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
           TV  W+S I   V    + +AL LF +MK  G+E + +T  ++  AC  +  L++ + +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            + +K    +   V T++   Y KC  +  A  LF   ++  +D+ +WNSMI  +A+ G 
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLF--SRMPXRDVASWNSMIXGFAQLGF 135

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGL 544
             +   L+ +M    +R D +T +GL
Sbjct: 136 VDRVVSLFCEMGIEGIRADSVTVIGL 161



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y   +GL  NL++ + LID YA  G +  ++++F ++   + + + T++   +  GE+++
Sbjct: 384 YATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKE 443

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            L ++ QM    + P   T+  V+++C+           HA  ++ G++ F+
Sbjct: 444 ALGLFFQMVELGLKPNHITFLAVLQACN-----------HAGFLEKGWECFN 484


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 303/547 (55%), Gaps = 41/547 (7%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I     NG   ++  L+   +    + D+ T  +++ +   L   E+ + +H   +
Sbjct: 83  WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  DL +  AL+ MY +   L+ A+ +F++M  +D V WN +IS Y  +G+  E+LE
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALE 202

Query: 321 -------LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
                  L M MV   F+ DL T  + + +   + ++E+GK +H  ++ +G +   +  N
Sbjct: 203 IYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 261

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF---------- 423
            LI+MY +C +L  ++++F  +K K  VSW+SMI  Y+ + +  ++L++F          
Sbjct: 262 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIIT 321

Query: 424 ---------------------SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
                                S M+ EGV  D  T+++ILP C  + A    K +HG   
Sbjct: 322 WNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF 381

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           KLGL S   V   +   Y+KCG +  + ++F   K  +KD++TW ++ISA   +G+  + 
Sbjct: 382 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK--TKDVVTWTALISACGMYGEGKKA 439

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            + + +M+ + + PD + F+ ++ AC ++GLVEEG   F  MK+ Y  EP  EHYA +V+
Sbjct: 440 VRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVD 499

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LL R+  +D+A + +  MP KPD+ +WG LLSAC+M  +TE+AE  +E++I + P++ G 
Sbjct: 500 LLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGY 559

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           YVL+SNIYAA GKW+ V  +R  ++ RGLKK PGCSW+EI   V+ F    +   Q + +
Sbjct: 560 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 619

Query: 703 YTILGIL 709
             +LG+L
Sbjct: 620 NKLLGML 626



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 240/483 (49%), Gaps = 44/483 (9%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSY 75
           +K LR     +R  + ++ S +L +     Q L ++H+  I L GLH ++I S+ LI  Y
Sbjct: 1   MKTLRVLHECSRQTLFSSISRALASAATTTQ-LHKLHSLIITL-GLHHSVIFSAKLIAKY 58

Query: 76  ANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           A+    + S  VF  + SP  N  L+ +I++ L+  G + + L +Y +     + P   T
Sbjct: 59  AHFRDPTSSFSVFR-LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYT 117

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           +P VI +C+ LLDF   + IH +V+ +GF S   +G+AL++ Y + +   +  K   +  
Sbjct: 118 FPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMP 177

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELF----KLMRMEGAEF--DSGTLINLLRSTVELK 247
            +D+ S WNSLIS    NG   ++ E++    KL      +F  D  T+ ++L++   L 
Sbjct: 178 LRDVVS-WNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLG 236

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            LE G+ VH   + S +  D + +  L++MY+K  +L  ++ +F  M  KD V WN MI+
Sbjct: 237 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 296

Query: 308 AYYQSGFPKESLE-------------------------------LLMCMVRSGFRADLFT 336
            Y Q+G   +SL+                               ++  M   G   D+ T
Sbjct: 297 VYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMAT 356

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            ++ +   S +     GK++H  + + G +  V V N LI+MY +C  L  + ++F  +K
Sbjct: 357 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 416

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VK 455
           TK VV+W+++I     + +  +A+R F EM+  G+  D V  + I+ AC + G +E  + 
Sbjct: 417 TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLN 476

Query: 456 YLH 458
           Y H
Sbjct: 477 YFH 479



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 185/395 (46%), Gaps = 52/395 (13%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           L++ Y+       +  +F   S  + V +WN +I A   +G   E+L L     R   + 
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D +T  + +++ + + + E  K +H  VL  G    + + N+LIDMYC   DL+ ARK+F
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 393 DSVKTKTVVSWSSMIKGYVTH---DQSLE----ALRLFSEMKLEGVEVDFVTIINILPAC 445
           + +  + VVSW+S+I GY  +   +++LE    +++LF EM +   + D +TI +IL AC
Sbjct: 174 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEM-VNQFKPDLLTITSILQAC 232

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            ++G LE  KY+H Y +  G    ++ +  +   YAKCG +  + E+F   K   KD ++
Sbjct: 233 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMK--CKDSVS 290

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSD-------------------------------V 534
           WNSMI+ Y ++G      K++  MK  D                               V
Sbjct: 291 WNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV 350

Query: 535 RPDLITFLGLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
            PD+ T L +L  C       +G+     IFK      G E        ++ +  + G +
Sbjct: 351 TPDMATMLSILPVCSLLAAKRQGKEIHGCIFK-----LGLESDVPVGNVLIEMYSKCGSL 405

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             + ++ K M  K D   W  L+SAC M+ E + A
Sbjct: 406 RNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKA 439


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 305/536 (56%), Gaps = 11/536 (2%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
           S +N +I         + +  LFK M  +  + D  T  ++L++   +K+L  G  VH +
Sbjct: 87  SAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHAL 146

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            + S F  +  V   L+ MY+    +  A+ +FD M ++  V WN M+S Y ++G   E 
Sbjct: 147 ILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEV 206

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           ++L   ++      D  T I+ + +   + N+E G+ +   ++  G     ++  SLIDM
Sbjct: 207 VKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDM 266

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  ++ ARK+FD +  + VV+WS+MI GY   D+  EAL LF EM+   V  + VT+
Sbjct: 267 YAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTM 326

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           +++L +C  +GA E  K++H Y  K  +    ++ T +   YAKCG I+ + E+F E  +
Sbjct: 327 VSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKE--M 384

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             K++ TW ++I   A +G+     + ++ M ++DV+P+ +TF+G+L+AC +A LV++GR
Sbjct: 385 SFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGR 444

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +F  M+  +  EP  EHY  MV++LGRAG ++EA + + +MPF P+A VW  LL++C+ 
Sbjct: 445 HLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRA 504

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H   E+AE + E +  +EP ++G+Y+LLSN YA  G+     ++R+ ++++ +KK PGCS
Sbjct: 505 HKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCS 564

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIM---------EGRRESSEELK 725
            IE+  +VHEF++ D  H  +  I+  L  +  +I          + R E+ EE K
Sbjct: 565 LIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESK 620



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 224/426 (52%), Gaps = 12/426 (2%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANL--GLLSLSQQVFNSITSPN 95
           +L  C+ P+ LQQ+HA  +    L  + I++  +++S A L    +  +  +FN I  P 
Sbjct: 27  ILQQCKTPKDLQQVHAHLLKTRRL-LDPIITEAVLESAALLLPDTIDYALSIFNHIDKPE 85

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           S  Y  +++ L+     +  LL++K+M  +S+   + T+  V+++CS +     GE++HA
Sbjct: 86  SSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHA 145

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQN 211
            ++K GF S + V + L++ Y  C      + G+ +  F  +  R    WNS++S   +N
Sbjct: 146 LILKSGFKSNEFVENTLIQMYANC-----GQIGVARHVFDGMPERSIVAWNSMLSGYTKN 200

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G  ++  +LF+ +     EFD  T+I++L +   L +LE+G ++    V     ++ ++ 
Sbjct: 201 GLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLT 260

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T+L+ MY+K   ++ A+ LFD+M  +D V W+ MIS Y Q+   KE+L L   M +    
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T ++ + S + +   E GK +H  + +      V++   LID Y +C  ++ + ++
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K V +W+++I+G   + +   AL  FS M    V+ + VT I +L AC +   +
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLV 440

Query: 452 EHVKYL 457
           +  ++L
Sbjct: 441 DQGRHL 446



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 184/343 (53%), Gaps = 4/343 (1%)

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           +++ A  +F+ +   +   +N+MI        P  +L L   M     + D FT  + + 
Sbjct: 70  TIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLK 129

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S MK +  G+Q+HA +L++G      V N+LI MY  C  +  AR +FD +  +++V+
Sbjct: 130 ACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVA 189

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+SM+ GY  +    E ++LF ++    +E D VT+I++L AC  +  LE  + +  Y +
Sbjct: 190 WNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIV 249

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
             GL   +++ T++   YAKCG ++ A +LFDE  +D +D++ W++MIS YA+     + 
Sbjct: 250 SKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDE--MDKRDVVAWSAMISGYAQADRCKEA 307

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
             L+ +M++ +V P+ +T + +L +C   G  E G+ +   +K+    + +      +++
Sbjct: 308 LNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK-KMKLTVTLGTQLID 366

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
              + G++D + E+ K+M FK +   W  L+     + E ++A
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMA 408



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 4/233 (1%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           + ++ A  IF+ +      +++ MI+G         AL LF +M  + V+ D  T  ++L
Sbjct: 69  DTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVL 128

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC  + AL   + +H   +K G  S   V   +   YA CG I +A  +FD   +  + 
Sbjct: 129 KACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFD--GMPERS 186

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I+ WNSM+S Y K+G W +  KL+ ++ +  +  D +T + +L AC     +E G +I  
Sbjct: 187 IVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELI-G 245

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           E   S G   +     S++++  + G +D AR+L  +M  K D   W  ++S 
Sbjct: 246 EYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISG 297



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 132/279 (47%), Gaps = 11/279 (3%)

Query: 37  SLLNLCENPQHLQ--QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S+L  C    +L+  ++   YI+  GL +N  L+++LID YA  G +  ++++F+ +   
Sbjct: 227 SVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKR 286

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++   ++    ++ L ++ +M   ++YP E T   V+ SC+ L  + +G+ +H
Sbjct: 287 DVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVH 346

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
             + K        +G  L++FY KC   D   E  K M    FK++ + W +LI     N
Sbjct: 347 FYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEM---SFKNVFT-WTALIQGLANN 402

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSV 270
           G+ + + E F  M     + +  T I +L +      ++ GR + + +    D    +  
Sbjct: 403 GEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEH 462

Query: 271 NTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
              ++ +  +   LE+A    D M    + VVW  ++++
Sbjct: 463 YGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLAS 501


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/518 (36%), Positives = 298/518 (57%), Gaps = 17/518 (3%)

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS--LELGRIVHCVAVVSDFCKD 267
            NG   ++   F+ M   G   D  T   +L +  ++ +  ++ GR +H  A +S    +
Sbjct: 6   HNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPN 65

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL--MCM 325
           + V TA++SMY K   L+DA+  F+++  K+ V WN M++ Y   G  +E+LEL   MC 
Sbjct: 66  VVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCE 125

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECE 383
                R D F+   A+ + S ++++E G+++H  + R G +    V V  +L++MY +C 
Sbjct: 126 RSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCG 185

Query: 384 DLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEM----KLEGVEVDFVTI 438
           DL  ARK+FDS++     V W++MI  Y  H +  +AL L+  M     L   +  FVT+
Sbjct: 186 DLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTV 245

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           I++   C  + AL+  + +H        ++   V+ A+   Y KCGC++ A ++F   K+
Sbjct: 246 IDV---CAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 302

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KD I+WN++IS+YA HG   Q   LY +M    V+P  +TF+GLL+AC + GLV +G 
Sbjct: 303 --KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 360

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  M++ +  +PS  H+  +++LLGR G + EA  ++K MP + +A  W  LL ACK 
Sbjct: 361 DYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKT 420

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H + +     A++++   P  +G YVLLSNIYAAAG+W  V K+R  +  RG+KK+PG S
Sbjct: 421 HGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKS 480

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
           WIEIG +VHEF + D+SHPQ + IY  LG + +E M+G
Sbjct: 481 WIEIGDVVHEFVSGDRSHPQGEEIYVELGKM-VEEMKG 517



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 189/428 (44%), Gaps = 34/428 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH RY  + GL  N+++ + +I  Y   G L  ++  F  +   NS+ +  ++ N   
Sbjct: 51  REIH-RYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKL 109

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            G   + L ++++M  +S     D + F   I +CS L D   G +IH  + + G +   
Sbjct: 110 DGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHK 169

Query: 167 D--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-WNSLISLAVQNGKSEKSFELFKL 223
           D  VG AL+  Y KC G  E  + +      D  S  WN++I+   Q+G+ +++ +L++ 
Sbjct: 170 DVVVGTALLNMYSKC-GDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRS 228

Query: 224 MR-MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
           M          GT + ++    EL +L+ GR +H     ++F  +L V+ AL+ MY K  
Sbjct: 229 MHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCG 288

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L++A  +F  M  KD + WN +IS+Y   G   ++L L   M   G +    T +  +S
Sbjct: 289 CLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLS 348

Query: 343 SISTMKNIEWGKQMHANVLRNGSDY------------QVSVHNSLIDMYCECEDLNCARK 390
           + S           H  ++ +G DY             V     +ID+      L  A  
Sbjct: 349 ACS-----------HGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAEL 397

Query: 391 IFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEM--KLEGVEVDFVTIINILPACVN 447
           +  S+  +   V W S++    TH      +R   ++  ++      +V + NI  A   
Sbjct: 398 VLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGR 457

Query: 448 IGALEHVK 455
              +E ++
Sbjct: 458 WKDVEKIR 465



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 16  VKFLRFPANQTRPHMTATHSFSL-LNLCENPQHLQQIHARYIILHG----LHQNLILSSN 70
           ++  R    ++R       SFS+ +  C N + L+Q    + +L      LH+++++ + 
Sbjct: 117 LELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTA 176

Query: 71  LIDSYANLGLLSLSQQVFNSIT-SPNSLLYGTILKNLSKFGEYEKTLLVYKQMA-LQSMY 128
           L++ Y+  G L  +++VF+SI    +S+ +  ++   ++ G  ++ L +Y+ M     + 
Sbjct: 177 LLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLA 236

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T+  VI  C+ L     G  IHA+V    FD+   V +ALV  Y KC    E    
Sbjct: 237 PKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDV 296

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
               K KD  S WN++IS    +G S+++  L++ M ++G +    T + LL
Sbjct: 297 FHSMKLKDEIS-WNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLL 347



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +++++C     L+Q   IHAR +       NL++S+ L+  Y   G L  +  VF+S+  
Sbjct: 244 TVIDVCAELSALKQGRAIHAR-VRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 302

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + TI+ + +  G  ++ LL+Y++M LQ + P E T+  ++ +CS           
Sbjct: 303 KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS----------- 351

Query: 154 HAQVVKLGFDSF 165
           H  +V  G D F
Sbjct: 352 HGGLVADGLDYF 363



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 8/135 (5%)

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL--TACVNAGLVEEGRIIFKEMKES 567
           ++A++ +G  S+    + +M QS  RPD +TF  +L   A + A  +++GR I +  + S
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET----E 623
            G  P+     +++++ G+ G +D+AR   +++ +K ++  W  +++  K+        E
Sbjct: 61  -GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK-NSVTWNAMMTNYKLDGRDREALE 118

Query: 624 LAELTAEKLISMEPE 638
           L     E+  S  P+
Sbjct: 119 LFREMCERSRSARPD 133


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 289/515 (56%), Gaps = 6/515 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN +I        S  S  L+  M   G +  + T   LL++   L   ELG   H   V
Sbjct: 68  WNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVV 127

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           V  +  D+ V  +L++MY +    + ++ +F++M +++ V W+ M+ AY  +G  +E L 
Sbjct: 128 VFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLL 187

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M+  G   +  + + A++ I      +        V+ NG D   SV N+ + MY 
Sbjct: 188 LFWRMLNEGIAPNRGSIVNAMACIHREHEAD---DFCRVVIDNGLDSDQSVQNAAMGMYA 244

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
            C  ++ AR+ F  +  K +V+W+SMI+ YV  D  + AL LF +MKL G+  D VT+++
Sbjct: 245 RCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLS 304

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           ++ A  N+ + +  +++HG   +    +  +++TA+   Y KCG +E A + FD  ++ +
Sbjct: 305 LIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFD--RMSA 362

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +++I+W++MIS Y  HG   +   L+ QMK S ++PD I F+ +L+AC + GL+ EG   
Sbjct: 363 RNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEGWEC 421

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           FK M   +G  P  EHYA MV+LLGRAG + EA+  ++ MP  PDA VWG LL AC++HS
Sbjct: 422 FKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHS 481

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             E AE  A  L +++ EN G Y+LLSNIYA++GK      +R  ++ RG++KT G + I
Sbjct: 482 NLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTII 541

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           EI   V+ F A D S+PQ D IY+ L  L   I E
Sbjct: 542 EIKNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQE 576



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 212/422 (50%), Gaps = 26/422 (6%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L+  C   + L+ +HA  +  H LH +L  S  LI  YA+LG +S +  +F++  S N 
Sbjct: 9   ALIKQCVTLEALKSLHASILKSH-LHPHLCTS--LIAQYASLGSISHAYALFSTSHSSNV 65

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            L+  I++  S       +L +Y +M    +     T+PF++++C CL DF  G + HA 
Sbjct: 66  FLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAH 125

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
           VV  G++S   V ++L+  Y +  G F+  + + +R  +     W+S++     NG+ E+
Sbjct: 126 VVVFGYESDVFVANSLMAMYGRF-GCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEE 184

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK---------D 267
              LF  M  EG   + G+++N +              +H      DFC+         D
Sbjct: 185 GLLLFWRMLNEGIAPNRGSIVNAMAC------------IHREHEADDFCRVVIDNGLDSD 232

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
            SV  A + MY++   ++ A+  F  + DKD V W  MI AY Q+  P  +LEL   M  
Sbjct: 233 QSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKL 292

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G   D  T ++ + ++S + + +  + +H  + R+     +++  ++ID+Y +C +L  
Sbjct: 293 LGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEY 352

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           ARK FD +  + ++SWS+MI GY  H    EAL LF +MK   ++ D +  + +L AC +
Sbjct: 353 ARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMK-ASIKPDHIAFVMVLSACSH 411

Query: 448 IG 449
            G
Sbjct: 412 GG 413



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 202/416 (48%), Gaps = 21/416 (5%)

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           I L++  V L++L   + +H   + S     L   T+L++ Y+ L S+  A  LF     
Sbjct: 8   IALIKQCVTLEAL---KSLHASILKSHLHPHLC--TSLIAQYASLGSISHAYALFSTSHS 62

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
            +  +WN +I A+  +   + SL L   M++ G +A  FT    + +   + + E G + 
Sbjct: 63  SNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARA 122

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           HA+V+  G +  V V NSL+ MY      + +R++F+ +  + VVSWSSM+  Y  + + 
Sbjct: 123 HAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRY 182

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTA 475
            E L LF  M  EG+  +  +I+N + AC++    EH         +  GL+S  SV  A
Sbjct: 183 EEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH---REHEADDFCRVVIDNGLDSDQSVQNA 238

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
               YA+CG I++A   F    I  KD++ W SMI AY +        +L+ QMK   + 
Sbjct: 239 AMGMYARCGRIDVARRFF--YGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIV 296

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA---SMVNLLGRAGHMDE 592
           PD +T L L+ A  N    +  R +   +  S+     + H A   ++++L  + G+++ 
Sbjct: 297 PDSVTLLSLIHAVSNLASFQLARFVHGVITRSF----FKNHIALDTAVIDLYVKCGNLEY 352

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL-ISMEPENAGNYVLLS 647
           AR+    M  + +   W  ++S   MH     A    +++  S++P++    ++LS
Sbjct: 353 ARKCFDRMSAR-NLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLS 407


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 215/679 (31%), Positives = 371/679 (54%), Gaps = 12/679 (1%)

Query: 37  SLLNLCENP-QHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           S+L  C    +HL    ++H R II  G+  + ++ ++L+  Y   G LS +++VF+ + 
Sbjct: 105 SVLRACAGSREHLSVGGKVHGR-IIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMP 163

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + + + T++ +  + GE  K L ++K M    + P   T   V+  C+ L        
Sbjct: 164 VRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARS 223

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +H Q+ +  FD  + + ++L+  Y KC     +E+ + ++  K     W ++IS   +  
Sbjct: 224 VHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSER-IFEKIAKKNAVSWTAMISSYNRGE 282

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL-SVN 271
            SEK+   F  M   G E +  TL ++L S   +  +  G+ VH  AV  +   +  S++
Sbjct: 283 FSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLS 342

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL+ +Y++   L D + +   +SD++ V WN +IS Y   G   ++L L   MV    +
Sbjct: 343 LALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIK 402

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  +++S+      +  GKQ+H +V+R     +  V NSLIDMY +   ++ A  +
Sbjct: 403 PDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEF-VQNSLIDMYSKSGSVDSASTV 461

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F+ +K ++VV+W+SM+ G+  +  S+EA+ LF  M    +E++ VT + ++ AC +IG+L
Sbjct: 462 FNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSL 521

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           E  K++H   +  GL  L + +TA+   YAKCG +  A  +F    + S+ I++W+SMI+
Sbjct: 522 EKGKWVHHKLIISGLKDLFT-DTALIDMYAKCGDLNAAETVF--RAMSSRSIVSWSSMIN 578

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
           AY  HG        + QM +S  +P+ + F+ +L+AC ++G VEEG+  F  MK S+G  
Sbjct: 579 AYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMK-SFGVS 637

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P+ EH+A  ++LL R+G + EA   +K+MPF  DA VWG L++ C++H + ++ +     
Sbjct: 638 PNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKND 697

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L  +  ++ G Y LLSNIYA  G+W    ++R+ ++   LKK PG S IEI + V  F A
Sbjct: 698 LSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKVFRFGA 757

Query: 692 ADQSHPQADAIYTILGILE 710
            +++  Q D IY  LG L+
Sbjct: 758 GEENRIQTDEIYRFLGNLQ 776



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/645 (24%), Positives = 325/645 (50%), Gaps = 29/645 (4%)

Query: 33  THSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           T    L   C + + + Q+HA  ++   L ++ +  + LI+SYA +G    S+ VF +  
Sbjct: 2   TQYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFP 61

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS-GE 151
            P+S +YG ++K        +  + +Y ++  ++   ++  +P V+R+C+   + +S G 
Sbjct: 62  YPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGG 121

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISL 207
           K+H +++K G D      DA++E  + C  G        ++ F  +  R    W++L+S 
Sbjct: 122 KVHGRIIKGGVDD-----DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSS 176

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            ++NG+  K+  +FK M  +G E D+ T+I+++    EL  L + R VH       F  D
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLD 236

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
            ++  +LL+MYSK   L  ++ +F+K++ K+ V W  MIS+Y +  F +++L     M++
Sbjct: 237 ETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIK 296

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV-SVHNSLIDMYCECEDLN 386
           SG   +L T  + +SS   +  I  GK +H   +R   D    S+  +L+++Y EC  L+
Sbjct: 297 SGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLS 356

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
               +   V  + +V+W+S+I  Y      ++AL LF +M  + ++ D  T+ + + AC 
Sbjct: 357 DCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACE 416

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           N G +   K +HG+ ++  ++    V  ++   Y+K G ++ A  +F++  I  + ++TW
Sbjct: 417 NAGLVPLGKQIHGHVIRTDVSD-EFVQNSLIDMYSKSGSVDSASTVFNQ--IKHRSVVTW 473

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG-----RIIF 561
           NSM+  ++++G+  +   L+  M  S +  + +TFL ++ AC + G +E+G     ++I 
Sbjct: 474 NSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLII 533

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             +K+ +          +++++  + G ++ A  + + M  +        +++A  MH  
Sbjct: 534 SGLKDLF-------TDTALIDMYAKCGDLNAAETVFRAMSSRSIVSW-SSMINAYGMHGR 585

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
              A  T  +++  E     N V+  N+ +A G    V + + + 
Sbjct: 586 IGSAISTFNQMV--ESGTKPNEVVFMNVLSACGHSGSVEEGKYYF 628


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/679 (29%), Positives = 349/679 (51%), Gaps = 106/679 (15%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++ ++A  G L  +++VF+ I  P+S+ + T++   +  G ++  +  + +M    + 
Sbjct: 83  NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGIS 142

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T+  V+ SC+       G+K+H+ VVKLG                        + G
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLG------------------------QSG 178

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           ++           NSL+++  + G S  +  +F  MR+                      
Sbjct: 179 VVPVA--------NSLLNMYAKCGDSVMAKVVFDRMRL---------------------- 208

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
                            KD S    ++SM+ +    + A  LFD+M+D D V WN +I+ 
Sbjct: 209 -----------------KDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITG 251

Query: 309 YYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           Y   G+   +LE    M++S   + D FT  + +S+ +  ++++ GKQ+HA+++R   D 
Sbjct: 252 YCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDI 311

Query: 368 QVSVHNSLIDMYCECE---------------------------------DLNCARKIFDS 394
             +V N+LI MY +                                   D++ AR IFDS
Sbjct: 312 AGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDS 371

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +K + VV+W++MI GY  +    +AL LF  M  EG + +  T+  +L    ++ +L+H 
Sbjct: 372 LKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHG 431

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           K LH  +++L   S  SV  A+   Y++ G I+ A ++F+      +D +TW SMI + A
Sbjct: 432 KQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNH-ICSYRDTLTWTSMILSLA 490

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           +HG  ++  +L+ +M + +++PD IT++G+L+AC + GLVE+G+  F  MK  +  EP+ 
Sbjct: 491 QHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTS 550

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
            HYA M++LLGRAG ++EA   +++MP +PD   WG LLS+C++H   +LA++ AEKL+ 
Sbjct: 551 SHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLL 610

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++P N+G Y+ L+N  +A GKW   AK+R  ++D+ +KK  G SW++I   VH F   D 
Sbjct: 611 IDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDA 670

Query: 695 SHPQADAIYTILGILELEI 713
            HPQ DAIY ++  +  EI
Sbjct: 671 LHPQRDAIYCMISKIWKEI 689



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 189/429 (44%), Gaps = 71/429 (16%)

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV--NTALLSMYSKLASLEDAKML 290
           S   ++LL+S ++ +   +GR +H   ++    + L V     LL++Y K  S  DA  L
Sbjct: 12  SDACVHLLQSAIKSRDPFIGRCIHA-RIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRL 70

Query: 291 FDKMSDK-------------------------------DRVVWNIMISAYYQSGFPKESL 319
           FD+M  K                               D V W  MI  Y   G  K ++
Sbjct: 71  FDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAV 130

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
              + MV SG     FT    ++S +  + ++ GK++H+ V++ G    V V NSL++MY
Sbjct: 131 HAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMY 190

Query: 380 CECEDLNCARKIFDSVKTK-------------------------------TVVSWSSMIK 408
            +C D   A+ +FD ++ K                                +VSW+S+I 
Sbjct: 191 AKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIIT 250

Query: 409 GYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
           GY      + AL  FS M K   ++ D  T+ ++L AC N  +L+  K +H + ++  ++
Sbjct: 251 GYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVD 310

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
              +V  A+   YAK G +E+A  + +     S ++I + S++  Y K GD      ++ 
Sbjct: 311 IAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFD 370

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            +K  DV    + +  ++      GL+ +  ++F+ M    G +P+    A++++++   
Sbjct: 371 SLKHRDV----VAWTAMIVGYAQNGLISDALVLFRLMIRE-GPKPNNYTLAAVLSVISSL 425

Query: 588 GHMDEAREL 596
             +D  ++L
Sbjct: 426 ASLDHGKQL 434



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 140/335 (41%), Gaps = 71/335 (21%)

Query: 353 GKQMHANVLRNGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV----------- 400
           G+ +HA ++++G  Y  V + N+L+++Y +    + A ++FD +  KT            
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 401 --------------------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
                               VSW++MI GY        A+  F  M   G+     T  N
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L +C    AL+  K +H + +KLG + +  V  ++   YAKCG   MA  +FD  ++  
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRL-- 208

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD  TWN+MIS + +   +     L+ QM      PD++++  ++T     G   +G  I
Sbjct: 209 KDTSTWNTMISMHMQFCQFDLALALFDQMTD----PDIVSWNSIIT-----GYCHQGYDI 259

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
                E++ +                         ++K    KPD    G +LSAC    
Sbjct: 260 --RALETFSF-------------------------MLKSSSLKPDKFTLGSVLSACANRE 292

Query: 621 ETELAELTAEKLISMEPENAGNY-VLLSNIYAAAG 654
             +L +     ++  + + AG     L ++YA +G
Sbjct: 293 SLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 6/249 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+I  ++L+D Y  +G +  ++ +F+S+   + + +  ++   ++ G     L++++ M 
Sbjct: 345 NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMI 404

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            +   P   T   V+   S L     G+++HA  ++L   S   VG+AL+  Y +  G  
Sbjct: 405 REGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSR-SGSI 463

Query: 184 ENEKGMIQR--KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           ++ + +      ++D  + W S+I    Q+G   ++ ELF+ M     + D  T + +L 
Sbjct: 464 KDARKIFNHICSYRDTLT-WTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLS 522

Query: 242 STVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDR 299
           +   +  +E G+   + +  V +     S    ++ +  +   LE+A      M  + D 
Sbjct: 523 ACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDV 582

Query: 300 VVWNIMISA 308
           V W  ++S+
Sbjct: 583 VAWGSLLSS 591


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/671 (30%), Positives = 356/671 (53%), Gaps = 13/671 (1%)

Query: 18  FLRFPANQTRPH-MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           FL+       P+ +T + + S       P     +H   I+  G    L +SS LI  Y+
Sbjct: 29  FLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHC-LILKKGFSNQLFVSSGLISMYS 87

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ----SMYPAED 132
               +  ++ +F+ +   + + + +++   S+ G  E+   ++  M        +  ++ 
Sbjct: 88  KHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDF 147

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-- 190
           T   V+++C  L     G+ +H   VK+GFDS   V  + V  Y KC  G  +  G+   
Sbjct: 148 TLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKC--GILDMAGLAFD 205

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           Q + KD+ + WN++I+   QN   E++ ELF  M +EG + +  T   +L+++  +    
Sbjct: 206 QIENKDIVA-WNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSA 264

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           +GR  H   +      D+ V TAL+ MYSK   +ED +  F +MS ++ V +N +I+ Y 
Sbjct: 265 VGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYS 324

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G  +E+L +   +   G   D FT +   SS S    +  G Q+H + ++ G D  VS
Sbjct: 325 LMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVS 384

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V NS+++ Y +C   + A + F+S+     V W+ +I G+  + +  +AL  F +M+   
Sbjct: 385 VGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFI 444

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
            + D  +  +++ A  +  A+E  ++LH + MK GL+    V +A+   Y+KCG +E A 
Sbjct: 445 DKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQ 504

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++F    +  K++++WNSMI+ YA++G   +   L+ +M  S + P  +TF+G+L AC +
Sbjct: 505 KVFS--VMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSH 562

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           AGLVEEGR  +  M  +YG  PS EH   MV+LLGRAG+++EA   +    F  +  +WG
Sbjct: 563 AGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWG 622

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLSAC +H  +++    A+  + +EP  + +Y  LSNIYA+   W+ V+++R  ++D G
Sbjct: 623 SLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMG 682

Query: 671 LKKTPGCSWIE 681
           ++K PGCSWIE
Sbjct: 683 VEKEPGCSWIE 693



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/514 (26%), Positives = 242/514 (47%), Gaps = 18/514 (3%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           RW S I+   + G  +++   F  M   G E ++ T    + +  +     L   +HC+ 
Sbjct: 8   RWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLI 67

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +   F   L V++ L+SMYSK   +++A+ LFD M ++D V WN MI+ Y Q G  +E+ 
Sbjct: 68  LKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEAC 127

Query: 320 ELLMCMVRSGFRADL----FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            L   M+ S     L    FT    + +   +     GK +H   ++ G D  + V  S 
Sbjct: 128 GLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGST 187

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           + MYC+C  L+ A   FD ++ K +V+W++MI GY  +    EA+ LF +M+LEG + + 
Sbjct: 188 VYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPND 247

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   +L A   +      +  H   +KLG +    V TA+   Y+K   IE     F E
Sbjct: 248 TTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGE 307

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +  ++++++N++I+ Y+  G + +  ++Y+Q++   + PD  TF+GL ++C  +  V 
Sbjct: 308 --MSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVA 365

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG  +     + +G +       S+VN   + G  D A E  + +  +P++  W  ++S 
Sbjct: 366 EGAQVHVHSVK-FGLDSDVSVGNSIVNFYSKCGFTDSALEAFESIN-RPNSVCWAGIISG 423

Query: 616 CKMHSETELAELT---AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
              + E E A +      K I    E +      S++  A   W  V + R  L    +K
Sbjct: 424 FAQNGEGEKALMQFCKMRKFIDKTDEFSS-----SSVIKAVSSWAAVEQGR-HLHAHVMK 477

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
               C+ I +G  V + ++       A  +++++
Sbjct: 478 SGLDCT-IYVGSAVIDMYSKCGMVEDAQKVFSVM 510



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 134/259 (51%), Gaps = 8/259 (3%)

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M + + V W   I+   + G   ++L   + M+R+G   +  T  A +S+ +        
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
             +H  +L+ G   Q+ V + LI MY + + +  AR +FD +  +  VSW+SMI GY   
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 414 DQSLEALRLFSEMKLEGVE-----VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
             + EA  LF  M +   E     V   T+  +L AC  +G     K +HGY++K+G +S
Sbjct: 121 GLNEEACGLFCSM-INSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDS 179

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              V+ +    Y KCG ++MAG  FD+  I++KDI+ WN+MI+ YA++    +  +L+ Q
Sbjct: 180 DLFVSGSTVYMYCKCGILDMAGLAFDQ--IENKDIVAWNTMITGYAQNCYEEEAIELFYQ 237

Query: 529 MKQSDVRPDLITFLGLLTA 547
           M+    +P+  TF  +L A
Sbjct: 238 MELEGFKPNDTTFCCVLKA 256



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 29/192 (15%)

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR--- 558
           +++ W S I+  A+ G   Q    + QM ++ + P+ IT+   ++AC  +          
Sbjct: 5   NVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLH 64

Query: 559 -IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
            +I K+     G+       + ++++  +   + EAR L  DMP + D   W  +++   
Sbjct: 65  CLILKK-----GFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVS-WNSMIAG-- 116

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
            +S+  L E       SM   +  N+ LL + +  A          T L+  G     GC
Sbjct: 117 -YSQRGLNEEACGLFCSM-INSCENWKLLVSDFTLA----------TVLKACG---GLGC 161

Query: 678 SWIEIGKLVHEF 689
           S   IGK VH +
Sbjct: 162 S--RIGKCVHGY 171


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 223/724 (30%), Positives = 379/724 (52%), Gaps = 22/724 (3%)

Query: 5   LPPACSLQSGHVKFLRFPANQTRPHMTAT----HSFSLLNLCENPQHLQ--QIHARYIIL 58
           LP +  LQ+  +KF       +R  +T T     S  LL  C    +L+  ++    +I 
Sbjct: 8   LPSSIYLQAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLID 67

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL--YGTILKNLSKFGEYEKTL 116
            GL  + +L ++LI  Y+  G    +  +F ++      L  +  I+   +      + L
Sbjct: 68  SGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRAL 127

Query: 117 LVYKQMALQS---MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-FDSFDDVGDAL 172
           L +  M   S   +YP E  +  ++RSCS  L F +G  I A ++K G FDS   VG AL
Sbjct: 128 LTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCAL 187

Query: 173 VEFYIKCDGGFENEKGMI---QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           ++ + K  GG + +   +   + + K+L + W  +I+   Q G  + + +LF  + +   
Sbjct: 188 IDMFTK--GGLDIQSARMVFDKMQHKNLVT-WTLMITRYSQLGLLDDAVDLFCRLLVSEY 244

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             D  TL +LL + VEL+   LG+ +H   + S    D+ V   L+ MY+K A++E+++ 
Sbjct: 245 TPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRK 304

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F+ M   + + W  +IS Y QS   +E+++L   M+      + FT  + + + +++ +
Sbjct: 305 IFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPD 364

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
              GKQ+H   ++ G      V NSLI+MY     + CARK F+ +  K ++S+++    
Sbjct: 365 FGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADA 424

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
                 S E+     E++  GV     T   +L     IG +   + +H   +K G  + 
Sbjct: 425 NAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTN 482

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             +N A+   Y+KCG  E A ++F++  +  +++ITW S+IS +AKHG  ++  +L+ +M
Sbjct: 483 LCINNALISMYSKCGNKEAALQVFND--MGYRNVITWTSIISGFAKHGFATKALELFYEM 540

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
            +  V+P+ +T++ +L+AC + GL++E    F  M  ++   P  EHYA MV+LLGR+G 
Sbjct: 541 LEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGL 600

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + EA E +  MPF  DA VW   L +C++H  T+L E  A+K++  EP +   Y+LLSN+
Sbjct: 601 LLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNL 660

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA+ G+W+ VA +R  ++ + L K  G SWIE+   VH+F   D SHPQA  IY  L  L
Sbjct: 661 YASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDEL 720

Query: 710 ELEI 713
            L+I
Sbjct: 721 ALKI 724


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/662 (29%), Positives = 352/662 (53%), Gaps = 20/662 (3%)

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           + +L+ S+A  G +  +Q+   +  S ++ L+  +++ L+  G     L  Y  M     
Sbjct: 45  TKSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGA 104

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENE 186
            P   T+P V++ C+ L     G   H+  ++LG  + D   G++L+ FY +   G  ++
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARL--GLVDD 162

Query: 187 KGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF--DSGTLINLL 240
               +R F  + +R    WNS++   V NG    +   F+ M  E  E   D   +I  L
Sbjct: 163 A---ERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMH-EALEVQHDGVGIIAAL 218

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +     +L  GR VH   +      D+ V T++L MY K   +  A+ +F  M  +  V
Sbjct: 219 AACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVV 278

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN MI  Y  +  P+E+ +  + M   G + ++ TAI  +++ +  ++  +G+ +H  +
Sbjct: 279 TWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYI 338

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
            R      V +  +L++MY +   +  + K+F  + TKT+VSW++MI  Y+  +  +EA+
Sbjct: 339 TRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAI 398

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
            LF ++  + +  D+ T+  ++PA V +G L   + +H Y ++LG    + +  AI   Y
Sbjct: 399 TLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMY 458

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           A+CG +  + E+FD  K+ +KD+I+WN+MI  YA HG      +++++MK + +RP+  T
Sbjct: 459 ARCGDVLSSREIFD--KMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNEST 516

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           F+ +LTAC  +GL +EG   F  M+  YG  P  EHY  M +LLGRAG + E  + +++M
Sbjct: 517 FVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENM 576

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP-----ENAGNYVLLSNIYAAAGK 655
           P  P  RVWG LL+A +  ++ ++AE  AE++  +E      +N G YVL+S++YA AG+
Sbjct: 577 PIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAGR 636

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           W  V ++++ + ++GL++T   S +E+  +   F   D +HPQ+  I  +   L  +I E
Sbjct: 637 WKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKMIQEVSNFLSGKIGE 696

Query: 716 GR 717
            R
Sbjct: 697 MR 698



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 208/400 (52%), Gaps = 12/400 (3%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           H+  I L     ++   ++L+  YA LGL+  +++VF+ + + + + + +++      G 
Sbjct: 131 HSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGL 190

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD--FISGEKIHAQVVKLGFDSFDDVG 169
               L+ +++M  +++    D    +    +C L+   + G ++HA V++ G +    VG
Sbjct: 191 GTLALVCFREMH-EALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVG 249

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
            ++++ Y KC G   + +G+    F  + SR    WN +I     N + E++F+ F  M+
Sbjct: 250 TSILDMYCKC-GDIASAEGV----FATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMK 304

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            EG + +  T INLL +  + +S   GR VH       F   + + TALL MYSK+  ++
Sbjct: 305 AEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVK 364

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            ++ +F +M+ K  V WN MI+AY       E++ L + ++      D FT  A V +  
Sbjct: 365 SSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFV 424

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  +   +QMH+ ++R G      + N+++ MY  C D+  +R+IFD +  K V+SW++
Sbjct: 425 LLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNT 484

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           MI GY  H Q   AL +FSEMK  G+  +  T +++L AC
Sbjct: 485 MIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTAC 524



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +F LL L    +  +Q+H+ YII  G  +N ++ + ++  YA  G +  S+++F+ + + 
Sbjct: 422 AFVLLGLL---RQCRQMHS-YIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAK 477

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           + + + T++   +  G+    L ++ +M    + P E T+  V+ +CS
Sbjct: 478 DVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACS 525


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 337/608 (55%), Gaps = 16/608 (2%)

Query: 104 KNLSKF---GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           K LS++   G+Y   L  +  M    +   + T+  ++ +   +     G+++H   +KL
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
           G D    V ++L+  Y K       + G  +  F ++  R    WNS+I+   QNG   +
Sbjct: 345 GLDLMLTVSNSLINMYCKL-----RKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVEL-KSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           +  LF  +   G + D  T+ ++L++   L + L L + VH  A+  +   D  V+TAL+
Sbjct: 400 AVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALI 459

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
             YS+   +++A++LF++  + D V WN M++ Y QS    ++L+L   M + G R+D F
Sbjct: 460 DAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDF 518

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T      +   +  I  GKQ+HA  +++G D  + V + ++DMY +C D++ A+  FDS+
Sbjct: 519 TLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
                V+W++MI G + + +   A  +FS+M+L GV  D  TI  +  A   + ALE  +
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H  ++KL   +   V T++   YAKCG I+ A  LF  ++I+  +I  WN+M+   A+
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF--KRIEMMNITAWNAMLVGLAQ 696

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG+  +  +L+ QMK   ++PD +TF+G+L+AC ++GLV E     + M   YG +P  E
Sbjct: 697 HGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIE 756

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HY+ + + LGRAG + +A  L++ M  +  A ++  LL+AC++  +TE  +  A KL+ +
Sbjct: 757 HYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLEL 816

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP ++  YVLLSN+YAAA KW+ +   RT ++   +KK PG SWIE+   +H F   D+S
Sbjct: 817 EPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRS 876

Query: 696 HPQADAIY 703
           + Q + IY
Sbjct: 877 NRQTELIY 884



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 158/699 (22%), Positives = 304/699 (43%), Gaps = 86/699 (12%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HAR +      +  +++ NLI  Y+  G L+ +++VF+ +   + + + +IL   ++  E
Sbjct: 62  HARILTFEENPERFLIN-NLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSE 120

Query: 112 -----YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
                 ++  L+++ +    +Y +  T   +++ C       + E  H    K+G D  +
Sbjct: 121 CVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDE 180

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK---- 222
            V  ALV  Y+K     E +    +  ++D+   WN ++   ++ G  E++ +L      
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDV-VLWNLMLKAYLEMGFKEEAIDLSSAFHS 239

Query: 223 ------------LMRMEGAEFDSGTL---------------------------------- 236
                       L R+ G + D+G +                                  
Sbjct: 240 SGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSAL 299

Query: 237 ----INLLRSTVE---------------LKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
                +++ S VE               + SL LG+ VHC+A+       L+V+ +L++M
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINM 359

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y KL     A+ +FD MS++D + WN +I+   Q+G   E++ L M ++R G + D +T 
Sbjct: 360 YCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTM 419

Query: 338 IAAVSSISTM-KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            + + + S++ + +   KQ+H + ++  +     V  +LID Y     +  A  +F+   
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-H 478

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
              +V+W++M+ GY       + L+LF+ M  +G   D  T+  +   C  + A+   K 
Sbjct: 479 NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQ 538

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +H Y++K G +    V++ I   Y KCG  +M+   F  + I   D + W +MIS   ++
Sbjct: 539 VHAYAIKSGYDLDLWVSSGILDMYVKCG--DMSAAQFAFDSIPVPDDVAWTTMISGCIEN 596

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE-MKESYGYEPSQE 575
           G+  + F +++QM+   V PD  T   L  A      +E+GR I    +K +   +P   
Sbjct: 597 GEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVG 656

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE--LAELTAEKLI 633
              S+V++  + G +D+A  L K +    +   W  +L     H E +  L      K +
Sbjct: 657 --TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKETLQLFKQMKSL 713

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
            ++P+      +LS    +         MR+   D G+K
Sbjct: 714 GIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIK 752



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 186/407 (45%), Gaps = 40/407 (9%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
           D + G+  HA+++    +    + + L+  Y KC       +   +   +DL S WNS++
Sbjct: 54  DLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVS-WNSIL 112

Query: 206 SLAVQNGKS-----EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +   Q+ +      +++F LF+++R +       TL  +L+  +    +      H  A 
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYAC 172

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D  V  AL+++Y K   +++ K+LF++M  +D V+WN+M+ AY + GF +E+++
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L      SG   +  T +  ++ IS       G    A  +++ ++              
Sbjct: 233 LSSAFHSSGLNPNEIT-LRLLARIS-------GDDSDAGQVKSFANGN------------ 272

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
                       D+     ++  +  +  Y+   Q    L+ F++M    VE D VT I 
Sbjct: 273 ------------DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFIL 320

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L   V + +L   + +H  ++KLGL+ + +V+ ++   Y K      A  +FD   +  
Sbjct: 321 MLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFD--NMSE 378

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
           +D+I+WNS+I+  A++G   +   L+ Q+ +  ++PD  T   +L A
Sbjct: 379 RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKA 425



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 2/194 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA Y I  G   +L +SS ++D Y   G +S +Q  F+SI  P+ + + T++    +
Sbjct: 537 KQVHA-YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIE 595

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE E+   V+ QM L  + P E T   + ++ SCL     G +IHA  +KL   +   V
Sbjct: 596 NGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFV 655

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G +LV+ Y KC G  ++   + +R      + WN+++    Q+G+ +++ +LFK M+  G
Sbjct: 656 GTSLVDMYAKC-GSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLG 714

Query: 229 AEFDSGTLINLLRS 242
            + D  T I +L +
Sbjct: 715 IKPDKVTFIGVLSA 728



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA  + L+  +   +  ++L+D YA  G +  +  +F  I   N   +  +L  L++
Sbjct: 638 RQIHANALKLNCTNDPFV-GTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQ 696

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            GE ++TL ++KQM    + P + T+  V+ +CS
Sbjct: 697 HGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 300/562 (53%), Gaps = 38/562 (6%)

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTV 244
           ++R F  +  R    +N+LI+     G   +S +L++ L+R E       TL  ++    
Sbjct: 98  MERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---------------------- 282
            L    LG  VHC  +   F     V + L+ MY+K+                       
Sbjct: 158 ALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNT 217

Query: 283 ---------SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
                     +EDAK LF  M D+D + W  M++   Q+G   E+L++   M   G   D
Sbjct: 218 LITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGID 277

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            +T  + +++   +  +E GKQ+HA + R   +  V V ++L+DMY +C  +  A  +F 
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  + ++SW++MI GY  +  S EA+R FSEM+++G++ D  T+ +++ +C N+ +LE 
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
               H  ++  GL    +V+ A+   Y KCG IE A  LFDE  +   D ++W ++++ Y
Sbjct: 398 GAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDE--MSFHDQVSWTALVTGY 455

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+ G   +   L+ +M  + ++PD +TF+G+L+AC  AGLVE+G   F  M++ +G  P 
Sbjct: 456 AQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPI 515

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HY  M++L  R+G   EA E +K MP  PDA  W  LLS+C++    E+ +  AE L+
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLL 575

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
             +P+N  +YVLL +++AA G+W  VA +R  +RDR +KK PGCSWI+    VH F A D
Sbjct: 576 ETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 635

Query: 694 QSHPQADAIYTILGILELEIME 715
           QSHP +  IY  L  L  ++ E
Sbjct: 636 QSHPFSSRIYEKLEWLNSKMAE 657



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 231/488 (47%), Gaps = 35/488 (7%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           NL   + L+ + A+  L+   +++F S+   +++ Y  ++   S  G   +++ +Y+ + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 124 LQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY------ 176
            + S+ P   T   +I   S L D   G  +H QV++LGF ++  VG  LV+ Y      
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 177 -------------------------IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
                                    ++C    E+ KG+ Q         W ++++   QN
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKM-IEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   ++ ++F+ MR EG   D  T  ++L +   L +LE G+ +H     + +  ++ V 
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVG 316

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           +AL+ MYSK  S+  A+ +F +M+ ++ + W  MI  Y Q+   +E++     M   G +
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIK 376

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  + +SS + + ++E G Q H   L +G    ++V N+L+ +Y +C  +  A ++
Sbjct: 377 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +     VSW++++ GY    ++ E + LF +M   G++ D VT I +L AC   G +
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLV 496

Query: 452 EH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           E    Y        G+  +    T +   Y++ G  + A E F ++   S D   W +++
Sbjct: 497 EKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEE-FIKQMPHSPDAFGWATLL 555

Query: 511 SAYAKHGD 518
           S+    G+
Sbjct: 556 SSCRLRGN 563



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/530 (24%), Positives = 223/530 (42%), Gaps = 109/530 (20%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L    ALLS  +    + D + LF  M ++D V +N +I+ +  +G P  S++L   ++
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 327 RS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           R    R    T  A +   S + +   G  +H  VLR G      V + L+DMY +   +
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 386 NCARKIFDSVKTKTVV-------------------------------SWSSMIKGYVTHD 414
             AR++F  ++ KTVV                               +W++M+ G   + 
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
             LEAL +F  M+ EGV +D  T  +IL AC  + ALE  K +H Y  +        V +
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGS 317

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y+KC  I +A  +F   ++  ++II+W +MI  Y ++    +  + +++M+   +
Sbjct: 318 ALVDMYSKCRSIRLAEAVF--RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD  T   ++++C N   +EEG   F  +    G         ++V L G+ G +++A 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 595 ELVKDMPF----------------------------------KPDARVWGPLLSACKMHS 620
            L  +M F                                  KPD   +  +LSAC   S
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSAC---S 491

Query: 621 ETELAELTAEKLISMEPENA-----GNYVLLSNIYAAAGKWN----------------GV 659
              L E   +   SM+ ++       +Y  + ++Y+ +G++                 G 
Sbjct: 492 RAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD---QSHPQADAIYTIL 706
           A + +  R RG         +EIGK     WAA+   ++ PQ  A Y +L
Sbjct: 552 ATLLSSCRLRGN--------MEIGK-----WAAENLLETDPQNPASYVLL 588



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 172/328 (52%), Gaps = 2/328 (0%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +      + +++ + LI       ++  ++ +F  +   +S+ + T++  L++ G  
Sbjct: 200 ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQ 259

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            + L V+++M  + +   + T+  ++ +C  L     G++IHA + +  ++    VG AL
Sbjct: 260 LEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSAL 319

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           V+ Y KC      E    +   +++ S W ++I    QN  SE++   F  M+M+G + D
Sbjct: 320 VDMYSKCRSIRLAEAVFRRMTCRNIIS-WTAMIVGYGQNACSEEAVRAFSEMQMDGIKPD 378

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             TL +++ S   L SLE G   HC+A+VS   + ++V+ AL+++Y K  S+EDA  LFD
Sbjct: 379 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFD 438

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +MS  D+V W  +++ Y Q G  KE+++L   M+ +G + D  T I  +S+ S    +E 
Sbjct: 439 EMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEK 498

Query: 353 GKQMHANVLRNGSDYQVSVHNS-LIDMY 379
           G     ++ ++     +  H + +ID+Y
Sbjct: 499 GCDYFDSMQKDHGIVPIDDHYTCMIDLY 526



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 47/319 (14%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA YI       N+ + S L+D Y+    + L++ VF  +T  N + +  ++    +
Sbjct: 298 KQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               E+ +  + +M +  + P + T   VI SC+ L     G + H   +  G   +  V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 169 GDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV  Y KC G  E+   +  +  F D  S W +L++   Q GK++++ +LF+ M   
Sbjct: 417 SNALVTLYGKC-GSIEDAHRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLAN 474

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G + D  T I                                    +LS  S+   +E  
Sbjct: 475 GLKPDGVTFI-----------------------------------GVLSACSRAGLVEKG 499

Query: 288 KMLFDKMSDKDRVV-----WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
              FD M     +V     +  MI  Y +SG  KE+ E +  M  S    D F     +S
Sbjct: 500 CDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLS 556

Query: 343 SISTMKNIEWGKQMHANVL 361
           S     N+E GK    N+L
Sbjct: 557 SCRLRGNMEIGKWAAENLL 575


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 300/562 (53%), Gaps = 38/562 (6%)

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTV 244
           ++R F  +  R    +N+LI+     G   +S +L++ L+R E       TL  ++    
Sbjct: 98  MERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---------------------- 282
            L    LG  VHC  +   F     V + L+ MY+K+                       
Sbjct: 158 ALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNT 217

Query: 283 ---------SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
                     +EDAK LF  M D+D + W  M++   Q+G   E+L++   M   G   D
Sbjct: 218 LITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGID 277

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            +T  + +++   +  +E GKQ+HA + R   +  V V ++L+DMY +C  +  A  +F 
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  + ++SW++MI GY  +  S EA+R FSEM+++G++ D  T+ +++ +C N+ +LE 
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
               H  ++  GL    +V+ A+   Y KCG IE A  LFDE  +   D ++W ++++ Y
Sbjct: 398 GAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDE--MSFHDQVSWTALVTGY 455

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+ G   +   L+ +M  + ++PD +TF+G+L+AC  AGLVE+G   F  M++ +G  P 
Sbjct: 456 AQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPI 515

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HY  M++L  R+G   EA E +K MP  PDA  W  LLS+C++    E+ +  AE L+
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLL 575

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
             +P+N  +YVLL +++AA G+W  VA +R  +RDR +KK PGCSWI+    VH F A D
Sbjct: 576 ETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 635

Query: 694 QSHPQADAIYTILGILELEIME 715
           QSHP +  IY  L  L  ++ E
Sbjct: 636 QSHPFSSRIYEKLEWLNSKMAE 657



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/572 (23%), Positives = 254/572 (44%), Gaps = 76/572 (13%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           NL   + L+ + A+  L+   +++F S+   +++ Y  ++   S  G   +++ +Y+ + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 124 LQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY------ 176
            + S+ P   T   +I   S L D   G  +H QV++LGF ++  VG  LV+ Y      
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 177 -------------------------IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
                                    ++C    E+ KG+ Q         W ++++   QN
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKM-IEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   ++ ++F+ MR EG   D  T  ++L +   L +LE G+ +H     + +  ++ V 
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVG 316

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           +AL+ MYSK  S+  A+ +F +M+ ++ + W  MI  Y Q+   +E++     M   G +
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIK 376

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  + +SS + + ++E G Q H   L +G    ++V N+L+ +Y +C  +  A ++
Sbjct: 377 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +     VSW++++ GY    ++ E + LF +M   G++ D VT I +L AC      
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSAC------ 490

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT---WNS 508
                                        ++ G +E   + FD  + D   +     +  
Sbjct: 491 -----------------------------SRAGLVEKGCDYFDSMQKDHGIVPIDDHYTC 521

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI  Y++ G + +  +   QM  S   PD   +  LL++C   G +E G+   + + E+ 
Sbjct: 522 MIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWAAENLLETD 578

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
              P+   Y  + ++    G   E   L + M
Sbjct: 579 PQNPAS--YVLLCSMHAAKGQWTEVAHLRRGM 608



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/530 (24%), Positives = 223/530 (42%), Gaps = 109/530 (20%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L    ALLS  +    + D + LF  M ++D V +N +I+ +  +G P  S++L   ++
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 327 RS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           R    R    T  A +   S + +   G  +H  VLR G      V + L+DMY +   +
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 386 NCARKIFDSVKTKTVV-------------------------------SWSSMIKGYVTHD 414
             AR++F  ++ KTVV                               +W++M+ G   + 
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
             LEAL +F  M+ EGV +D  T  +IL AC  + ALE  K +H Y  +        V +
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGS 317

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y+KC  I +A  +F   ++  ++II+W +MI  Y ++    +  + +++M+   +
Sbjct: 318 ALVDMYSKCRSIRLAEAVF--RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD  T   ++++C N   +EEG   F  +    G         ++V L G+ G +++A 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 595 ELVKDMPF----------------------------------KPDARVWGPLLSACKMHS 620
            L  +M F                                  KPD   +  +LSAC   S
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSAC---S 491

Query: 621 ETELAELTAEKLISMEPENA-----GNYVLLSNIYAAAGKWN----------------GV 659
              L E   +   SM+ ++       +Y  + ++Y+ +G++                 G 
Sbjct: 492 RAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD---QSHPQADAIYTIL 706
           A + +  R RG         +EIGK     WAA+   ++ PQ  A Y +L
Sbjct: 552 ATLLSSCRLRGN--------MEIGK-----WAAENLLETDPQNPASYVLL 588



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 178/363 (49%), Gaps = 34/363 (9%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL-- 106
             +H + + L G      + S L+D YA +GL+  +++VF  + +   ++Y T++  L  
Sbjct: 166 HSVHCQVLRL-GFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 107 -----------------------------SKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
                                        ++ G   + L V+++M  + +   + T+  +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           + +C  L     G++IHA + +  ++    VG ALV+ Y KC      E    +   +++
Sbjct: 285 LTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNI 344

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
            S W ++I    QN  SE++   F  M+M+G + D  TL +++ S   L SLE G   HC
Sbjct: 345 IS-WTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
           +A+VS   + ++V+ AL+++Y K  S+EDA  LFD+MS  D+V W  +++ Y Q G  KE
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS-LI 376
           +++L   M+ +G + D  T I  +S+ S    +E G     ++ ++     +  H + +I
Sbjct: 464 TIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 377 DMY 379
           D+Y
Sbjct: 524 DLY 526



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 47/319 (14%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA YI       N+ + S L+D Y+    + L++ VF  +T  N + +  ++    +
Sbjct: 298 KQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               E+ +  + +M +  + P + T   VI SC+ L     G + H   +  G   +  V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 169 GDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV  Y KC G  E+   +  +  F D  S W +L++   Q GK++++ +LF+ M   
Sbjct: 417 SNALVTLYGKC-GSIEDAHRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLAN 474

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G + D  T I                                    +LS  S+   +E  
Sbjct: 475 GLKPDGVTFI-----------------------------------GVLSACSRAGLVEKG 499

Query: 288 KMLFDKMSDKDRVV-----WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
              FD M     +V     +  MI  Y +SG  KE+ E +  M  S    D F     +S
Sbjct: 500 CDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLS 556

Query: 343 SISTMKNIEWGKQMHANVL 361
           S     N+E GK    N+L
Sbjct: 557 SCRLRGNMEIGKWAAENLL 575


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/524 (36%), Positives = 290/524 (55%), Gaps = 11/524 (2%)

Query: 201  WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
            WNS+I+   + G S ++   F  +R  G      +    ++S   L  L  GR+ H  A 
Sbjct: 1983 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 2042

Query: 261  VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            V  F  DL V++AL+ MYSK   L+DA+ LFD++  ++ V W  MI+ Y Q+     +L 
Sbjct: 2043 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 321  LLMCMVR--------SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
            L    +         +    D    ++ +S+ S +      + +H  V++ G D  + V 
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVG 2162

Query: 373  NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGV 431
            N+L+D Y +C     ++K+FD ++ K  +SW+SMI  Y     S EAL +F  M +  GV
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222

Query: 432  EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
              + VT+  +L AC + GAL   K +H   +K+ L     V T+I   Y KCG +EMA +
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282

Query: 492  LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
             FD  ++  K++ +W +M++ Y  HG   +   ++ +M ++ V+P+ ITF+ +L AC +A
Sbjct: 2283 TFD--RMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHA 2340

Query: 552  GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
            GLVEEG   F  MK  Y  EP  EHY  MV+L GRAG ++EA  L+K M  KPD  VWG 
Sbjct: 2341 GLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGS 2400

Query: 612  LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
            LL AC++H   +L E+ A+KL  ++P+N G YVLLSN+YA AG+W  V +MR  +++R L
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQL 2460

Query: 672  KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
             K PG S +E+   VH F   D+ HP  + IY  L  L LE+ +
Sbjct: 2461 VKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQK 2504



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 203/393 (51%), Gaps = 36/393 (9%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           LL++    K L   R +H   + S    D  +   L+ +YS    +  A +LF ++ +  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
              WN++I A   +G  +++L L   MV  G  AD FT    + + +   +I+ GK +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECE-------------------------------DLNC 387
           ++++ G    V V N+LID Y +C                                DL  
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           AR+IFD + +K VVSW++MI GY+ + Q  EAL LF  M+ E +  +  T+++++ AC  
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +G L   + +H Y++K  +     + TA+   Y+KCG I+ A E+F  E +  K + TWN
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVF--ETMPRKSLPTWN 327

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           SMI++   HG   +   L+++M++ +V+PD ITF+G+L ACV+   V+EG   F  M + 
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           YG  P  EHY  M  L  R+ ++DEA +  K++
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAFKSTKEV 420



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 223/455 (49%), Gaps = 28/455 (6%)

Query: 82   SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
            +L+   +  +   N   + +++ +L++ G+  + L  +  +    + P   ++P  I+SC
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025

Query: 142  SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR- 200
            S L D +SG   H Q    GF++   V  AL++ Y KC G  ++ + +    F ++  R 
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKC-GQLKDARAL----FDEIPLRN 2080

Query: 201  ---WNSLISLAVQNGKSEKSFELFKLMRMEGAE--------FDSGTLINLLRSTVELKSL 249
               W S+I+  VQN +++ +  LFK    E  E         DS  ++++L +   +   
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 250  ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
             +   VH   V   F   + V   L+  Y+K      +K +FD M +KD + WN MI+ Y
Sbjct: 2141 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY 2200

Query: 310  YQSGFPKESLELLMCMVRS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
             QSG   E+LE+   MVR  G R +  T  A + + +    +  GK +H  V++   +Y 
Sbjct: 2201 AQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYN 2260

Query: 369  VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
            V V  S+IDMYC+C  +  A+K FD +K K V SW++M+ GY  H ++ EAL +F +M  
Sbjct: 2261 VCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR 2320

Query: 429  EGVEVDFVTIINILPACVNIGALEHVKYL-----HGYSMKLGLNSLSSVNTAIFISYAKC 483
             GV+ +++T +++L AC + G +E   +      H Y ++ G+         +   + + 
Sbjct: 2321 AGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYG----CMVDLFGRA 2376

Query: 484  GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            GC+  A  L    K+   D + W S++ A   H +
Sbjct: 2377 GCLNEAYNLIKRMKM-KPDFVVWGSLLGACRIHKN 2410



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 188/367 (51%), Gaps = 35/367 (9%)

Query: 21  FPANQ----TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           FP+       R ++ A  +  LL  C+N +HL+QIHA+ II  GL  + +L+  LI  Y+
Sbjct: 12  FPSKNIPLTPRGNIRAKKALFLLQNCKNFKHLRQIHAK-IIRSGLSNDQLLTRKLIHLYS 70

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
             G ++ +  +F  I +P +  +  I++  +  G  E+ L++YK M  Q +   + T+PF
Sbjct: 71  THGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPF 130

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG------FENEK--- 187
           VI++C+  L    G+ +H  ++K GF     V + L++FY KC         FE  +   
Sbjct: 131 VIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRN 190

Query: 188 ---------GMI--------QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
                    G+I        +R F ++ S+    W ++I+  ++N + E++ ELFK M+ 
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           E    +  T+++L+++  E+  L LGR +H  A+ +     + + TAL+ MYSK  S++D
Sbjct: 251 ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKD 310

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +F+ M  K    WN MI++    G  +E+L L   M R   + D  T I  + +   
Sbjct: 311 AIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVH 370

Query: 347 MKNIEWG 353
           +KN++ G
Sbjct: 371 IKNVKEG 377



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 151/345 (43%), Gaps = 47/345 (13%)

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           +Y    FP +++ L     R   RA       A+  +   KN +  +Q+HA ++R+G   
Sbjct: 6   SYTHDVFPSKNIPL---TPRGNIRAK-----KALFLLQNCKNFKHLRQIHAKIIRSGLSN 57

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
              +   LI +Y     +  A  +F  ++     +W+ +I+    +  S +AL L+  M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            +G+  D  T   ++ AC N  +++  K +HG  +K G +    V   +   Y KCG   
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 488 MAGELFDE-----------------------------EKIDSKDIITWNSMISAYAKHGD 518
            A ++F++                             ++I SK++++W +MI+ Y ++  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE--- 575
             +  +L+ +M+  ++ P+  T + L+ AC   G++  GR I       Y  +   E   
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCIEIGV 292

Query: 576 -HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
               +++++  + G + +A E+ + MP K     W  ++++  +H
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVH 336



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 127/259 (49%), Gaps = 8/259 (3%)

Query: 55   YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
            +++  G   ++ + + L+D+YA  G   +S++VF+ +   + + + +++   ++ G   +
Sbjct: 2149 FVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGE 2208

Query: 115  TLLVYKQMA--LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
             L V+  M   +   Y A  T   V+ +C+      +G+ IH QV+K+  +    VG ++
Sbjct: 2209 ALEVFHGMVRHVGVRYNAV-TLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 173  VEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            ++ Y KC G  E  K    R K K++KS W ++++    +G+++++ ++F  M   G + 
Sbjct: 2268 IDMYCKC-GRVEMAKKTFDRMKEKNVKS-WTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325

Query: 232  DSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            +  T +++L +      +E G    + +    D    +     ++ ++ +   L +A  L
Sbjct: 2326 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 2385

Query: 291  FDKMSDK-DRVVWNIMISA 308
              +M  K D VVW  ++ A
Sbjct: 2386 IKRMKMKPDFVVWGSLLGA 2404


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/619 (31%), Positives = 336/619 (54%), Gaps = 7/619 (1%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           ++   + L+  YA  G    +++VF+ +   + + + +++      G +         M 
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSM- 211

Query: 124 LQSMYPAE-DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
           ++S +P    +   V+ +C    +   G  IHA  VK+G ++  ++ +ALV+ Y K  G 
Sbjct: 212 MRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKF-GD 270

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            E    +     +  +  WNS I   +  G       +F+ M        S TL +LL +
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
            VEL S +LGR VH  ++      D+ V  +L+ MY+K  SLE A  +F++M D++ V W
Sbjct: 331 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 390

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N MI+   Q+G   E+  L+  M +SG   +  T +  + + + M +++ GKQ+HA  +R
Sbjct: 391 NAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIR 450

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
            G  + + + N+LIDMY +C  L+ AR IF+  + K  VS++++I GY       E+L L
Sbjct: 451 RGLMFDLFISNALIDMYSKCGQLSLARNIFERSE-KDDVSYNTLILGYSQSPWCFESLLL 509

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F +M+  G++ D V+ +  L AC N+   +H K +H   ++  L+    ++ ++   Y K
Sbjct: 510 FKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTK 569

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
            G +  A ++F+  KI  KD+ +WN+MI  Y  HG     F+L+  MK   +  D ++++
Sbjct: 570 GGMLVTASKIFN--KITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYI 627

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +L AC + GLV++G+  F +M  +   EP Q HYA MV+LLGRAG + +  E+++DMPF
Sbjct: 628 AVLAACSHGGLVDKGKKYFSQMV-AQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPF 686

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
             ++ VWG LL AC++H   ELA+  AE L  ++PE++G Y L+ N+YA  G+WN   K+
Sbjct: 687 PANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKI 746

Query: 663 RTFLRDRGLKKTPGCSWIE 681
           R  ++ R ++K P  SW++
Sbjct: 747 RKLMKSRKVQKNPAYSWVQ 765



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 144/589 (24%), Positives = 293/589 (49%), Gaps = 24/589 (4%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF--NSITSPNSLLYGTILKN 105
           L++ HA  ++   L  +L L+  L+ SYA L  L+ ++ V   + +   ++ L+ ++ + 
Sbjct: 32  LRRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRA 91

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI--SGEKIHAQVVKLGFD 163
           LS      + L VY  M   ++ P + T+PF + + +  +      G ++HA  ++ G  
Sbjct: 92  LSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHL 151

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
           +    G+ LV FY  C    +  +   +   +D+ S WNSL+S  + NG    +      
Sbjct: 152 ADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVS-WNSLVSAFLVNGMFHDARRALVS 210

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G   +  +L++++ +    +  + G  +H +AV       +++  AL+ MY K   
Sbjct: 211 MMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGD 270

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +E +  +FD M +++ V WN  I  +  +GF  + L +   M          T  + + +
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
           +  + + + G+++H   ++   D  + V NSL+DMY +   L  A  IF+ +K + VVSW
Sbjct: 331 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 390

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++MI   V +    EA RL ++M+  G   + +T++N+LPAC  + +L+  K +H +S++
Sbjct: 391 NAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIR 450

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL     ++ A+   Y+KCG + +A  +F+  +   KD +++N++I  Y++   W  CF
Sbjct: 451 RGLMFDLFISNALIDMYSKCGQLSLARNIFERSE---KDDVSYNTLILGYSQ-SPW--CF 504

Query: 524 K---LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQEH 576
           +   L+ QM+   +  D ++F+G L+AC N  + + G+    ++ + +   + +  +   
Sbjct: 505 ESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN--- 561

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             S+++L  + G +  A ++   +  K D   W  ++    MH + ++A
Sbjct: 562 --SLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDIA 607


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/612 (32%), Positives = 343/612 (56%), Gaps = 46/612 (7%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           ++I +Q+ ++G +   D  + L+ F    D    N +   ++ F  ++      +N ++ 
Sbjct: 160 KQIQSQIFRIGLEGDRDTINKLMAFC--ADSSLGNLR-YAEKIFNYVQDPSLFVYNVMVK 216

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
           +  + G   K   LF+ +R +G   D  T   +L++   L+ +  G  V    V +    
Sbjct: 217 MYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDL 276

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D  V  +L+ MY +L+++E+AK LFD+M+ +D V WN+MIS Y +    ++++     M 
Sbjct: 277 DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQ 336

Query: 327 RSGF-RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           + G  + D  T ++ +S+ + +KN+E G ++H N +R    +   + N+L+DMY +C  L
Sbjct: 337 QEGNEKPDEATVVSTLSACTALKNLELGDEIH-NYVRKELGFTTRIDNALLDMYAKCGCL 395

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVT----------HDQSL------------------ 417
           N AR IFD +  K V+ W+SMI GY+            D+S                   
Sbjct: 396 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 455

Query: 418 ---EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              +A+ LF EM+++ V+ D  T++ +L  C  +GALE  K++HGY  +  +     V T
Sbjct: 456 HFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 515

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y+KCGC++ + E+F E  ++ KD  +W S+I   A +G  S+  +L+++M++   
Sbjct: 516 ALIEMYSKCGCVDKSLEIFYE--LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGA 573

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD ITF+G+L+AC + GLVEEGR  F  MK+ +  EP  EHY  +++LLGRAG +DEA 
Sbjct: 574 KPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAE 633

Query: 595 ELVKDMPFKPDARV---WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EL++++P +    V   +G LLSAC++H+  ++ E  A+KL ++E  ++  + LL+NIYA
Sbjct: 634 ELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYA 693

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           +  +W    K+R  +++ G+KK PGCS IE+  +VHEF   D SHP+   I ++L  +  
Sbjct: 694 SVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVTG 753

Query: 712 EIMEGRRESSEE 723
           +++ G +ES  E
Sbjct: 754 QLL-GLKESQVE 764



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 154/575 (26%), Positives = 275/575 (47%), Gaps = 43/575 (7%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN--LGLLSLSQQV 87
           +T       L  C++   L+QI ++ I   GL  +    + L+   A+  LG L  ++++
Sbjct: 141 LTKKSCIECLRNCKSMDQLKQIQSQ-IFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKI 199

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           FN +  P+  +Y  ++K  +K G   K LL+++Q+    ++P   TYPFV+++  CL D 
Sbjct: 200 FNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDV 259

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
             GEK+   +VK G D  + V ++L++ Y +     EN K +           WN +IS 
Sbjct: 260 RQGEKVRGFIVKTGMDLDNYVYNSLIDMYYEL-SNVENAKKLFDEMTTRDSVSWNVMISG 318

Query: 208 AVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            V+  + E +   F+ M+ EG E  D  T+++ L +   LK+LELG  +H   V  +   
Sbjct: 319 YVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNY-VRKELGF 377

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL----- 321
              ++ ALL MY+K   L  A+ +FD+MS K+ + W  MIS Y   G  +E+ +L     
Sbjct: 378 TTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSP 437

Query: 322 -----LMCMVRSGF---------------------RADLFTAIAAVSSISTMKNIEWGKQ 355
                L   + +G+                     + D FT +  ++  + +  +E GK 
Sbjct: 438 VRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKW 497

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H  +  N     V V  +LI+MY +C  ++ + +IF  ++ K   SW+S+I G   + +
Sbjct: 498 IHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGK 557

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
           + EALRLFSEM+  G + D +T I +L AC + G +E  +       K+        +  
Sbjct: 558 TSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYG 617

Query: 476 IFIS-YAKCGCIEMAGELFDEEKIDSKDIIT--WNSMISAYAKHGDWSQCFKLYTQMKQ- 531
             I    + G ++ A EL  E  I++ +I+   + +++SA   H +     +L  +++  
Sbjct: 618 CVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENI 677

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
                 + T L  + A V+    E+ + + ++MKE
Sbjct: 678 ESCDSSIHTLLANIYASVDRW--EDAKKVRRKMKE 710


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 307/557 (55%), Gaps = 37/557 (6%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEF-YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           ++IH+Q++K G  +       L+EF  I   G       + +   +  +  WN++I    
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            +     + + +  M + G E +S T   LL+S  ++ + + G+ +H   +      D  
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 270 VNTALLSMYSK-------------------------------LASLEDAKMLFDKMSDKD 298
           V+T+L++MY++                                  L+DA+ LF+++  +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN MI+ Y QSG  +E+L     M R+    +  T +  +S+ +   ++E G  + +
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            +  +G    + + N+LIDMY +C DL+ AR +F+ +  K ++SW+ MI GY   +   E
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE 348

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK--LGLNSLSSVNTAI 476
           AL LF +M+   VE + VT ++ILPAC  +GAL+  K++H Y  K  LGL + +S+ T++
Sbjct: 349 ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTN-TSLWTSL 407

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              YAKCG IE A ++F   K   K + +WN+MIS  A HG  +   +L+ QM+     P
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEP 465

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D ITF+G+L+AC +AGLVE GR  F  M E Y   P  +HY  M++LLGRAG  DEA  L
Sbjct: 466 DDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL 525

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           +K+M  KPD  +WG LL AC++H   EL E  A+ L  +EPEN G YVLLSNIYA AG+W
Sbjct: 526 MKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRW 585

Query: 657 NGVAKMRTFLRDRGLKK 673
           + VA++RT L D+G+KK
Sbjct: 586 DDVARIRTKLNDKGMKK 602



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 164/600 (27%), Positives = 278/600 (46%), Gaps = 81/600 (13%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSIT 92
           S +LL+ C++ Q+L+QIH++ II  GLH      S LI+  + +  G LS +  +F SI 
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQ-IIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            PN  ++ T+++  S        +  Y +M L  + P   T+PF+++SC+ +     G++
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIK-CDGGFE----------------------NEKGM 189
           IH  V+KLG +S   V  +L+  Y +  + G+                         +G 
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 190 I---QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           +   +R F+++  R    WN++I+   Q+G+ E++   F+ M+      +  T++ +L +
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             +  SLELG  V           +L +  AL+ MYSK   L+ A+ LF+ + +KD + W
Sbjct: 274 CAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISW 333

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N+MI  Y      KE+L L   M +S    +  T ++ + + + +  ++ GK +HA + +
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDK 393

Query: 363 NGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
                   S+  SLIDMY +C ++  A+++F  +K K++ SW++MI G   H  +  AL 
Sbjct: 394 KFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALE 453

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS-- 479
           LF +M+ EG E D +T + +L AC + G +E           LG    SS+     IS  
Sbjct: 454 LFRQMRDEGFEPDDITFVGVLSACSHAGLVE-----------LGRQCFSSMVEDYDISPK 502

Query: 480 YAKCGC-IEMAGE--LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
               GC I++ G   LFDE +                               MK  +++P
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAE-----------------------------ALMKNMEMKP 533

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D   +  LL AC   G VE G    K + E     P    Y  + N+   AG  D+   +
Sbjct: 534 DGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGA--YVLLSNIYATAGRWDDVARI 591


>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 989

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 194/625 (31%), Positives = 338/625 (54%), Gaps = 6/625 (0%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  GL + + + S L+  Y+ LG L  ++ +F+S T  N+LL+ +I+       E+   
Sbjct: 368 VIKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMA 427

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           L  + +M ++++ P   T   VI  C  + D    + IHA  V+  F+    V +AL+  
Sbjct: 428 LDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAM 487

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           Y  C G   +   + Q+    +   WN++IS   +    E S +LF  MR EG +FD  T
Sbjct: 488 YGDC-GELSSSYKLFQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVT 546

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           LI L+ S    +   +G  +H +AV S    D+S+   L++MYS   S+E  + LFD +S
Sbjct: 547 LIGLISSISVAEDTTVGESLHSLAVKSGCNMDISLTNTLITMYSNCGSVEACQRLFDNLS 606

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            ++ V +N++++ Y ++   +E L L   MV++    +  T +   + +   +N + GK 
Sbjct: 607 SRNTVSYNVLMTGYRKNNLSEEILPLFRQMVKNEQEPNHITVL---NLLPVCQNHQQGKS 663

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   +RN S  + S   S I MY    +++ + K+F+SV  + ++ W++++   V    
Sbjct: 664 VHCYAIRNFSTLETSFFTSAICMYSRFNNVDYSCKLFNSVGERNIIVWNAILSACVQCKL 723

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
           +  A   F +M    ++ D VT+++++ AC  +G  +  + +    ++ G      V  A
Sbjct: 724 ADTAFDFFRQMHFLNMKPDEVTMMSLVSACAQLGNSDLGECVTALILQKGFGGTLLVVNA 783

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   +++CG +  A ELFD   +  KD +TW++MI++Y+ HGD      +++ M  S V+
Sbjct: 784 LIDMHSRCGSLSFARELFDSSVV--KDSVTWSAMINSYSMHGDCESALAIFSMMIDSGVK 841

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD ITF+ +L+AC ++G VE+ R +FK ++  +G  P  EHYA MV+LLGR+GH+DEA +
Sbjct: 842 PDDITFVIILSACSHSGFVEQARALFKSLQIDHGITPRMEHYACMVDLLGRSGHLDEAYD 901

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           +V+ M F+P   +   LL AC+ H  +++ E     LI  +  N  +YV+LSNIYA+ GK
Sbjct: 902 VVRSMSFRPSESLLESLLGACRFHGNSKIGEAVGNLLIDSQHGNPRSYVMLSNIYASVGK 961

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWI 680
           WN    +R  +  +GL+K  G S +
Sbjct: 962 WNDYEWLRVDMEAKGLRKDAGVSLV 986



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/533 (27%), Positives = 271/533 (50%), Gaps = 11/533 (2%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           F      +  PH  A   F  L+   + + L ++HA   +   + ++  + + ++D Y +
Sbjct: 29  FASLTPPRALPHPDAFPEF--LHATRSLKCLSKLHALLAVAGAIARDTSVVTAVVDRYLS 86

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTIL--KNLSKFGEYEKTLLVYKQMALQSMYPAED-TY 134
            G  + +  VF         +Y   L  +  S  G + + L +Y+ +     + +++ T+
Sbjct: 87  FGRPASAASVFAGAYRRRPTVYSLNLAVRCFSDHGFHRELLDLYRTLC---TFGSDNFTF 143

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P VI++C+ +     G ++H +V++ G +    V  AL++ Y K      +         
Sbjct: 144 PPVIKACAAVSCLPLGREMHCRVLRTGHEGNVGVQTALLDMYAKAGWIGASRTVFDFMGQ 203

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           KDL S WN++IS    NG   ++ E  + M+ +G   ++ TL+ +  +       + G  
Sbjct: 204 KDLIS-WNAMISGYSLNGSLREAVEATQEMQQDGMRANASTLVCIAGACGAAGDSDAGGS 262

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H  A+      D S+  AL+S+Y+ L  L  +++LFD    KD V +N MISAY Q G 
Sbjct: 263 LHAFALKCGVLGDESLAPALISLYAALDDLSSSRVLFDLQHVKDLVSYNSMISAYMQHGK 322

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            KES ++   M  +G   +L T I+ + + S    +  G  +H  V++ G   Q+SV ++
Sbjct: 323 WKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFFGVNLGDSVHGMVIKFGLAEQISVVSA 382

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           L+ MY +  +L+ A+ +FDS   K  + W+S+I GY+ +++   AL  F +M++E V  D
Sbjct: 383 LVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCKMQIENVAPD 442

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T+I ++  C +I  L   K +H Y+++       SV  A+   Y  CG +  + +LF 
Sbjct: 443 ATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKLF- 501

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            +K++ + +I+WN++IS YA+  D     KL+ QM+Q  ++ D++T +GL+++
Sbjct: 502 -QKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGLISS 553



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 199/408 (48%), Gaps = 23/408 (5%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
            L +T  LK L   ++   +AV     +D SV TA++  Y        A  +F     + 
Sbjct: 47  FLHATRSLKCLS--KLHALLAVAGAIARDTSVVTAVVDRYLSFGRPASAASVFAGAYRRR 104

Query: 299 RVVW--NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
             V+  N+ +  +   GF +E L+L   +    F +D FT    + + + +  +  G++M
Sbjct: 105 PTVYSLNLAVRCFSDHGFHRELLDLYRTLCT--FGSDNFTFPPVIKACAAVSCLPLGREM 162

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H  VLR G +  V V  +L+DMY +   +  +R +FD +  K ++SW++MI GY  +   
Sbjct: 163 HCRVLRTGHEGNVGVQTALLDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSLNGSL 222

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            EA+    EM+ +G+  +  T++ I  AC   G  +    LH +++K G+    S+  A+
Sbjct: 223 REAVEATQEMQQDGMRANASTLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDESLAPAL 282

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              YA    +  +  LFD + +  KD++++NSMISAY +HG W + F ++ QM  + + P
Sbjct: 283 ISLYAALDDLSSSRVLFDLQHV--KDLVSYNSMISAYMQHGKWKESFDVFRQMHCAGLGP 340

Query: 537 DLITFLGLLTAC-----VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           +L+T + +L  C     VN G    G +I       +G        +++V++  + G +D
Sbjct: 341 NLVTVISVLPTCSDFFGVNLGDSVHGMVI------KFGLAEQISVVSALVSMYSKLGELD 394

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
            A+ L  D   + +  +W  ++S   +++E  +A    +    M+ EN
Sbjct: 395 SAKHLF-DSCTEKNNLLWNSIISGYLVNNEWNMA---LDTFCKMQIEN 438



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 206/413 (49%), Gaps = 13/413 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + IHA Y + +    N  + + L+  Y + G LS S ++F  +     + + TI+   ++
Sbjct: 463 KSIHA-YAVRNRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISWNTIISGYAE 521

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             + E ++ ++ QM  + +     T   +I S S   D   GE +H+  VK G +    +
Sbjct: 522 IRDLEASVKLFFQMRQEGLQFDVVTLIGLISSISVAEDTTVGESLHSLAVKSGCNMDISL 581

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
            + L+  Y  C G  E      QR F +L SR    +N L++   +N  SE+   LF+ M
Sbjct: 582 TNTLITMYSNC-GSVE----ACQRLFDNLSSRNTVSYNVLMTGYRKNNLSEEILPLFRQM 636

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
                E +  T++NLL      ++ + G+ VHC A+ +    + S  T+ + MYS+  ++
Sbjct: 637 VKNEQEPNHITVLNLLPVC---QNHQQGKSVHCYAIRNFSTLETSFFTSAICMYSRFNNV 693

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           + +  LF+ + +++ +VWN ++SA  Q      + +    M     + D  T ++ VS+ 
Sbjct: 694 DYSCKLFNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHFLNMKPDEVTMMSLVSAC 753

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + + N + G+ + A +L+ G    + V N+LIDM+  C  L+ AR++FDS   K  V+WS
Sbjct: 754 AQLGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDSVTWS 813

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +MI  Y  H     AL +FS M   GV+ D +T + IL AC + G +E  + L
Sbjct: 814 AMINSYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACSHSGFVEQARAL 866


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 295/495 (59%), Gaps = 4/495 (0%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M ++G E +     ++L   +   ++  G+ VH   + + +   + + T L+ +Y+K   
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L DA+ + D+M +++ V W  MIS Y Q G+  E+L L + M+ SG   + FT    ++S
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            ++    + G+Q+H+ V++   +  + V +SL+DMY +   +  AR++FD +  + VVS 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GY       EAL LF  ++ EG+  ++VT  ++L A   + AL+H + +H + ++
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             L     +  ++   Y+KCG +  +  +FD   +  + +I+WN+M+  Y+KHG   +  
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD--SMPERTVISWNAMLVGYSKHGLGREAV 298

Query: 524 KLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYASMV 581
           +L+  MK+ + V+PD +TFL +L+ C + G+ + G  IF EM  +  G+EP  EHY  +V
Sbjct: 299 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 358

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +L GRAG ++EA E +K MPF+P A +WG LL AC++H    + E  A +L+ +E ENAG
Sbjct: 359 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 418

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
           NYV+LSN+YA+AG+W+ V  +R  ++++ + K PG SWIE+ + +H F A+D+SHP+ + 
Sbjct: 419 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 478

Query: 702 IYTILGILELEIMEG 716
           ++  +  L ++I E 
Sbjct: 479 VFAKVRELSIKIKEA 493



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 230/493 (46%), Gaps = 42/493 (8%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M +Q +      Y  V+  C        G+++HA ++K  ++    +   L+  Y KC  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             +  + + +   +++ S W ++IS   Q G + ++  LF  M M G   +  T   +L 
Sbjct: 61  LGDARRVLDEMPERNVVS-WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 119

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           S       +LGR +H + + + F   + V ++LL MY+K   + +A+ +FD + ++D V 
Sbjct: 120 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 179

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
              +IS Y Q G  +E+L+L   + R G R++  T  + ++++S +  ++ G+Q+H++VL
Sbjct: 180 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 239

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           R    + V + NSLIDMY +C  L  +R+IFDS+  +TV+SW++M+ GY  H    EA+ 
Sbjct: 240 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVE 299

Query: 422 LFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           LF  MK E  V+ D VT + +L  C            HG     GL              
Sbjct: 300 LFKLMKEENKVKPDSVTFLAVLSGCS-----------HGGMEDRGL-------------- 334

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
                 E+  E+ +++     +I  +  ++  + + G   + F+    +K+    P    
Sbjct: 335 ------EIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEF---IKKMPFEPTAAI 385

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE---ARELV 597
           +  LL AC     V  G  + + + E      +  +Y  + NL   AG  D+    REL+
Sbjct: 386 WGSLLGACRVHQNVHIGEFVARRLLEI--ESENAGNYVILSNLYASAGRWDDVRTVRELM 443

Query: 598 KDMP-FKPDARVW 609
           K+    K   R W
Sbjct: 444 KEKAVIKEPGRSW 456



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 174/373 (46%), Gaps = 14/373 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++HA ++I       + L + LI  Y     L  +++V + +   N + +  ++   S+
Sbjct: 30  QRVHA-HMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQ 88

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L ++ +M +    P E T+  V+ SC+    F  G +IH+ V+K  F+S   V
Sbjct: 89  RGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFV 148

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G +L++ Y K     E      +R F  L  R      ++IS   Q G  E++ +LF+ +
Sbjct: 149 GSSLLDMYAKAGKICE-----ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 203

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           + EG   +  T  ++L +   L +L+ GR VH   + +     + +  +L+ MYSK  SL
Sbjct: 204 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSL 263

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSS 343
             ++ +FD M ++  + WN M+  Y + G  +E++EL   M      + D  T +A +S 
Sbjct: 264 TYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSG 323

Query: 344 ISTMKNIEWGKQMHANVL--RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTV 400
            S     + G ++   ++  ++G + ++  +  ++D++     +  A +    +    T 
Sbjct: 324 CSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTA 383

Query: 401 VSWSSMIKGYVTH 413
             W S++     H
Sbjct: 384 AIWGSLLGACRVH 396


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 198/612 (32%), Positives = 343/612 (56%), Gaps = 46/612 (7%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           ++I +Q+ ++G +   D  + L+ F    D    N +   ++ F  ++      +N ++ 
Sbjct: 114 KQIQSQIFRIGLEGDRDTINKLMAFC--ADSSLGNLR-YAEKIFNYVQDPSLFVYNVMVK 170

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
           +  + G   K   LF+ +R +G   D  T   +L++   L+ +  G  V    V +    
Sbjct: 171 IYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDL 230

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D  V  +L+ MY +L+++E+AK LFD+M+ +D V WN+MIS Y +    ++++     M 
Sbjct: 231 DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQ 290

Query: 327 RSGF-RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           + G  + D  T ++ +S+ + +KN+E G ++H N +R    +   + N+L+DMY +C  L
Sbjct: 291 QEGNEKPDEATVVSTLSACTALKNLELGDEIH-NYVRKELGFTTRIDNALLDMYAKCGCL 349

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVT----------HDQSL------------------ 417
           N AR IFD +  K V+ W+SMI GY+            D+S                   
Sbjct: 350 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 409

Query: 418 ---EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              +A+ LF EM+++ ++ D  T++ +L  C  +GALE  K++HGY  +  +     V T
Sbjct: 410 HFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 469

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y+KCGC++ + E+F E  ++ KD  +W S+I   A +G  S+  +L+++M++   
Sbjct: 470 ALIEMYSKCGCVDKSLEIFYE--LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGA 527

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD ITF+G+L+AC + GLVEEGR  F  MK+ +  EP  EHY  +++LLGRAG +DEA 
Sbjct: 528 KPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAE 587

Query: 595 ELVKDMPFKPDARV---WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EL++++P +    V   +G LLSAC++H+  ++ E  A+KL ++E  ++  + LL+NIYA
Sbjct: 588 ELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYA 647

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           +  +W    K+R  +++ G+KK PGCS IE+  +VHEF   D SHP+   I ++L  +  
Sbjct: 648 SVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVTG 707

Query: 712 EIMEGRRESSEE 723
           +++ G +ES  E
Sbjct: 708 QLL-GLKESQVE 718



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 153/566 (27%), Positives = 273/566 (48%), Gaps = 43/566 (7%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN--LGLLSLSQQVFNSITSPNS 96
           L  C++   L+QI ++ I   GL  +    + L+   A+  LG L  ++++FN +  P+ 
Sbjct: 104 LRNCKSMDQLKQIQSQ-IFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSL 162

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            +Y  ++K  +K G   K LL+++Q+    ++P   TYPFV+++  CL D   GEK+   
Sbjct: 163 FVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGF 222

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
           +VK G D  + V ++L++ Y +     EN K +           WN +IS  V+  + E 
Sbjct: 223 IVKTGMDLDNYVYNSLIDMYYEL-SNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFED 281

Query: 217 SFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           +   F+ M+ EG E  D  T+++ L +   LK+LELG  +H   V  +      ++ ALL
Sbjct: 282 AINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNY-VRKELGFTTRIDNALL 340

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL----------LMCM 325
            MY+K   L  A+ +FD+MS K+ + W  MIS Y   G  +E+ +L          L   
Sbjct: 341 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTA 400

Query: 326 VRSGF---------------------RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           + +G+                     + D FT +  ++  + +  +E GK +H  +  N 
Sbjct: 401 MINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENR 460

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               V V  +LI+MY +C  ++ + +IF  ++ K   SW+S+I G   + ++ EALRLFS
Sbjct: 461 ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFS 520

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS-YAKC 483
           EM+  G + D +T I +L AC + G +E  +       K+        +    I    + 
Sbjct: 521 EMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRA 580

Query: 484 GCIEMAGELFDEEKIDSKDIIT--WNSMISAYAKHGDWSQCFKLYTQMKQ-SDVRPDLIT 540
           G ++ A EL  E  I++ +I+   + +++SA   H +     +L  +++        + T
Sbjct: 581 GLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHT 640

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKE 566
            L  + A V+    E+ + + ++MKE
Sbjct: 641 LLANIYASVDRW--EDAKKVRRKMKE 664


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 212/706 (30%), Positives = 375/706 (53%), Gaps = 17/706 (2%)

Query: 20  RFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYA 76
           R  A   +P+       +++++C   + L   ++IH R II  GL  + IL + L+  Y 
Sbjct: 149 RMDAEGVKPNQVTF--VTIVDVCAKLRLLDLGRKIHHR-IINEGLEPDGILGNALVHMYG 205

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           + G     + VF+ +   + LL+ T++   S+ G+YE+ LLV+++M L+ +   E TY  
Sbjct: 206 SCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMS 265

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           ++  C  L     GE I A++++  F S   +  +L+  Y +C G  +  KG+++  ++ 
Sbjct: 266 MVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQC-GILDRAKGLLEHMYQR 324

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               WN++++   QNG + ++  L + M MEG   +  T +++L +   L++L  GR +H
Sbjct: 325 DVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIH 384

Query: 257 CVAVVSDFC-KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
              ++     ++++V  ++++MY K    E A  +F+ M  KD V WN +I+A   +   
Sbjct: 385 ARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKF 444

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNS 374
           +++LEL   M   G R++ FT ++ + +   +++++  +Q+HA     G      +V NS
Sbjct: 445 QDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNS 504

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS--LEALRLFSEMKLEGVE 432
           +++MY  C  L  A+K FDS++ K +V+WS ++  Y          A + F EM+ EG++
Sbjct: 505 VVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIK 564

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--NTAIFISYAKCGCIEMAG 490
              VT ++ L AC  +  LEH + +H  +   G    S V  NT I + Y KCG    A 
Sbjct: 565 PGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINM-YGKCGSPSDAK 623

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +FD+  +  K +I+WNS+I AYA +G   +      +M      PD  T + +L    +
Sbjct: 624 LVFDQ--MPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSH 681

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF-KPDARVW 609
           AGL+E G   F+   + +G EPS      +V+LL R G +D A EL+   P  + D   W
Sbjct: 682 AGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAW 741

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
             LL+ACK + + +     AE++  +EP+++G++V+L+N+YA+ G+W+  +++R  +   
Sbjct: 742 MTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERM 801

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            +KK PGCSWIE+   VHEF + +  HP+   I   L  L L + E
Sbjct: 802 SVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMRE 847



 Score =  255 bits (652), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 180/680 (26%), Positives = 344/680 (50%), Gaps = 23/680 (3%)

Query: 12  QSGHVK-----FLRFPANQTRPHMTATHSFSL-LNLCENP---QHLQQIHARYIILHGLH 62
           Q+GH +     F R     TRP       F + L+ C       H +QIH+  ++  GL 
Sbjct: 35  QNGHYREALELFTRMQWEGTRPDKVV---FVIALDACAASGELDHGRQIHSS-VVGSGLT 90

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            N+I+S++L++ Y     +  +++VF+ +   + + +  +L   ++ G + + L    +M
Sbjct: 91  SNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRM 150

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             + + P + T+  ++  C+ L     G KIH +++  G +    +G+ALV  Y  C G 
Sbjct: 151 DAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSC-GS 209

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           F++ K +  R  +     W ++I+   QNG+ E+   +F+ M +EG + +  T ++++  
Sbjct: 210 FDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEV 269

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
              L +++ G ++    + S FC    + T+L+S+Y +   L+ AK L + M  +D V W
Sbjct: 270 CRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAW 329

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N M++A  Q+G   E++ LL  M   GF A+  T ++ + + + ++ +  G+++HA VL 
Sbjct: 330 NAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLL 389

Query: 363 NG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
            G    +V+V NS+I MY +C     A  +F+++  K  VSW+++I   V + +  +AL 
Sbjct: 390 CGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALE 449

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS-VNTAIFISY 480
           LF  M+LEG+  +  T++++L AC  +  L+  + +H  +   G    S+ V  ++   Y
Sbjct: 450 LFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMY 509

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA--KHGDWSQCFKLYTQMKQSDVRPDL 538
           A+CG +  A + FD   ++ K ++ W+ +++AYA  K G   + FK + +M+   ++P  
Sbjct: 510 ARCGSLLDAKKAFD--SLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGE 567

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +TF+  L AC     +E GR + +    S   E S     +++N+ G+ G   +A+ +  
Sbjct: 568 VTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFD 627

Query: 599 DMPFKPDARVWGPLLSACKM--HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
            MP K     W  L+ A     H+   L+ L    L   +P++  +  +L  +  A    
Sbjct: 628 QMPEKCLIS-WNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLE 686

Query: 657 NGVAKMRTFLRDRGLKKTPG 676
            GV   R+ ++D GL+ + G
Sbjct: 687 RGVEHFRSSIQDHGLEPSSG 706



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/542 (24%), Positives = 253/542 (46%), Gaps = 5/542 (0%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y     ++ +  VF+ I++ N   +  ++   S+ G Y + L ++ +M  +   P +  +
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
              + +C+   +   G +IH+ VV  G  S   + ++LV  Y KC      EK       
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +D+ S W +++++  QNG   ++ E    M  EG + +  T + ++    +L+ L+LGR 
Sbjct: 122 RDVVS-WTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H   +      D  +  AL+ MY    S +D K +F +M     ++W  MI+   Q+G 
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            +E L +   M   G +A+  T ++ V     +  ++ G+ + A +L +       +  S
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATS 300

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI +Y +C  L+ A+ + + +  + VV+W++M+     +  + EA+ L   M +EG   +
Sbjct: 301 LISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGAN 360

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEMAGELF 493
            VT +++L AC N+ AL   + +H   +  G L    +V  ++   Y KCG  E A  +F
Sbjct: 361 KVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVF 420

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
             E +  KD ++WN++I+A   +  +    +L+  M+   +R +  T L LL AC     
Sbjct: 421 --EAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLED 478

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           ++  R I            S     S+VN+  R G + +A++    +  K     W  +L
Sbjct: 479 LKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLV-AWSIIL 537

Query: 614 SA 615
           +A
Sbjct: 538 AA 539



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 199/377 (52%), Gaps = 5/377 (1%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K A + DA M+FD +S K+   W +M++AY Q+G  +E+LEL   M   G R D   
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            + A+ + +    ++ G+Q+H++V+ +G    + + NSL++MY +C+D+ CA K+FD + 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + VVSW++M+  Y  +    +AL   S M  EGV+ + VT + I+  C  +  L+  + 
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +H   +  GL     +  A+   Y  CG  +    +F   ++    ++ W +MI+  +++
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFS--RMGQSSVLLWTTMIAGCSQN 238

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G + +   ++ +M    V+ + +T++ ++  C N   V+EG +I   + ES  +  S   
Sbjct: 239 GQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESP-FCSSTLL 297

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
             S+++L G+ G +D A+ L++ M ++ D   W  +++AC  + +   A +   + + ME
Sbjct: 298 ATSLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNGDNWEA-IHLLRRMDME 355

Query: 637 PENAGNYVLLSNIYAAA 653
              A     LS + A A
Sbjct: 356 GFGANKVTYLSVLEACA 372



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 225/454 (49%), Gaps = 4/454 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  +++   QNG   ++ ELF  M+ EG   D    +  L +      L+ GR +H   V
Sbjct: 26  WTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVV 85

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S    ++ ++ +L++MY K   +  A+ +FD M  +D V W  M++ Y Q+G   ++LE
Sbjct: 86  GSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALE 145

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
            L  M   G + +  T +  V   + ++ ++ G+++H  ++  G +    + N+L+ MY 
Sbjct: 146 CLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYG 205

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
            C   +  + +F  +   +V+ W++MI G   + Q  E L +F +M LEGV+ + VT ++
Sbjct: 206 SCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMS 265

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           ++  C N+ A++  + +    ++    S + + T++   Y +CG ++ A  L   E +  
Sbjct: 266 MVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLL--EHMYQ 323

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +D++ WN+M++A A++GD  +   L  +M       + +T+L +L AC N   + +GR I
Sbjct: 324 RDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREI 383

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
              +      +       S++ + G+ G  + A  + + MP K D   W  +++A   +S
Sbjct: 384 HARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVS-WNAVINASVGNS 442

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           + + A L     + +E   +  + LLS + A  G
Sbjct: 443 KFQDA-LELFHGMELEGLRSNEFTLLSLLEACGG 475


>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
          Length = 711

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 211/653 (32%), Positives = 354/653 (54%), Gaps = 15/653 (2%)

Query: 38  LLNLCENP--QHLQQIHARYIILHGLHQNLILSSNLIDSYANL--GLLSLSQQVFNSITS 93
           LL L   P    ++++HA  +++ G H++ +L++ L+ +YA +  G L  + +VF+ + +
Sbjct: 64  LLRLQSAPALTEVRRLHA-ALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPT 122

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEK 152
            NS  +  ++K L   G + + L  Y  M       A+  TYP V+++C+ L +   G K
Sbjct: 123 RNSFAWNAVIKGLVDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRK 182

Query: 153 IHAQV---VKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISL 207
           +   V   +  G    +  V  ALV+ + KC G     + M +    +DL S W ++I  
Sbjct: 183 VQENVETDIARGIAKGNVFVQCALVDMFAKC-GCLGEARNMFESMGVRDLAS-WTAMIGG 240

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
           AV+ G   +   L K M+ EG   DS     ++ +  ++K L  G  +H  AV      D
Sbjct: 241 AVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVKCGVGDD 300

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V  AL+ MY K A L+ A  LF  +  KD   W+ +I+ + Q+     S+ L   MV 
Sbjct: 301 ICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVA 360

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
           SG + +  T  + + SIS ++ + +GK++H   LRN  ++   + ++LID YC    +  
Sbjct: 361 SGIKPNSTTIASILPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCRQGYIRD 420

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A+ +F+      +V  +SMI+GYV +  S  ALRL   +  EG+  D VT++++LP C  
Sbjct: 421 AQIVFEFKPKNDLVVLNSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQ 480

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
              L   K LH Y+++  ++S  SV  A+   Y KCGC+E+A ++F    +  ++ +T+N
Sbjct: 481 PSRLLQGKELHAYAIRHNISSCFSVTNALTDMYCKCGCLEIANKIF--LLMTERNTVTYN 538

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           ++IS+  KHG   Q F L+  MK+  V PD +TF+ LL+ C + GL+++G   +  M   
Sbjct: 539 TLISSLGKHGHADQAFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGLCFYDSMLRD 598

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           Y   P +EHY+ +V+L  R+G +D+A   + ++   P+  V G LLSAC+ H   ++AEL
Sbjct: 599 YNIPPDKEHYSCIVDLYSRSGKLDDAWSFIANLQEVPEIDVLGCLLSACRDHHRMDIAEL 658

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
            AE++    P + G ++LLSN+YA+AG W+ V ++RT + +R LKK  G S I
Sbjct: 659 VAERIFEQNPNDPGYHILLSNVYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 711


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 202/606 (33%), Positives = 324/606 (53%), Gaps = 42/606 (6%)

Query: 143 CLLD----FISGEKIHAQVVKLGFDSFDDVGDALVEFY--IKCDGGFENEKGMIQRKFKD 196
           CLL+    F  G +IHAQ +  G          L+ F+  +    G ++ + +  +    
Sbjct: 14  CLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCP 73

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIV 255
               WN++I    ++    ++  L+  M  +G A  ++ T   LL S   L SLE G  V
Sbjct: 74  NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEV 133

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +   F  DL V  AL+ +YS   +L  A+ LFD+   +D V +N MI  Y +   P
Sbjct: 134 HSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQP 193

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN--GSDYQVSVHN 373
           + +L L   M  SG   D FT +A  S  S +     GKQ+HA V +N    D  + + +
Sbjct: 194 ESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKS 253

Query: 374 SLIDMYCECE--------------------------------DLNCARKIFDSVKTKTVV 401
           +++DMY +C                                 ++N ARK+F+ +  + V+
Sbjct: 254 AIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVI 313

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           SW++MI GY    Q  EAL LF EM+  G++ D VT++ +L AC  +GA +  K L+   
Sbjct: 314 SWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQY 373

Query: 462 MKLGLNSLSSVNTAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           ++ G+ + +++ TA  +  YAKCG I+ A E+F     + K    +NSMI+  A+HG   
Sbjct: 374 IENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGE 433

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
               ++ ++  + ++PD +TF+G+L AC ++GL+EEG+ +F+ M  +YG +P  EHY  M
Sbjct: 434 TAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCM 493

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+LLGR G ++EA +LV+ MPF+ ++ +W  LLSAC+ H   ++ E+  +KL+ ME ++ 
Sbjct: 494 VDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHG 553

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLSNI A A +W    ++R  + D G++K PG S+IE+G  +H F A+D+SHPQ  
Sbjct: 554 ARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGK 613

Query: 701 AIYTIL 706
            I  +L
Sbjct: 614 EIELML 619



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 249/531 (46%), Gaps = 55/531 (10%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL---LSLSQQVFNSI 91
           S  LL  C++ +   QIHA+ I+ +GLH  +   S LI  ++ LG    L  S+ +F+ I
Sbjct: 12  SLCLLESCKSFKQGLQIHAQTIV-NGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQI 70

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISG 150
             PN  ++ T+++  S+     + +++Y  M  + + P  + T+PF++ SC+ L     G
Sbjct: 71  DCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPG 130

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAV 209
            ++H+ ++K GF+S   V +AL+  Y    G     + +      +DL S +N++I    
Sbjct: 131 HEVHSHIIKHGFESDLFVRNALIHLY-SVFGNLNLARTLFDESLVRDLVS-YNTMIKGYA 188

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC------------ 257
           +  + E +  LF  M+  G   D  T + L      L    +G+ +H             
Sbjct: 189 EVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSN 248

Query: 258 ----VAVVSDFCKDLSVNTA------------------LLSMYSKLASLEDAKMLFDKMS 295
                A+V  + K   +N A                  ++  Y++   +  A+ LF+ M 
Sbjct: 249 ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMH 308

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           ++D + W  MIS Y Q+G   E+LEL   M   G + D  T +A +S+ + +   + GK+
Sbjct: 309 ERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKR 368

Query: 356 MHANVLRNGSDYQVSVHN-SLIDMYCECEDLNCARKIFDSV--KTKTVVSWSSMIKGYVT 412
           ++   + NG   Q ++   +++DMY +C  ++ A +IF  V    KT   ++SMI G   
Sbjct: 369 LYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQ 428

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL-----HGYSMKLGLN 467
           H     A+ +F E+   G++ D VT + +L AC + G +E  K L     + Y +K  + 
Sbjct: 429 HGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQME 488

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
               +   +     + GC+E A +L  +   ++  +I W +++SA   HG+
Sbjct: 489 HYGCMVDLL----GRYGCLEEAYDLVQKMPFEANSVI-WRALLSACRTHGN 534



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 193/443 (43%), Gaps = 51/443 (11%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHA--RYIILHGLHQNLILSSNLID 73
           V ++   A    P    T  F LLN C     L+  H    +II HG   +L + + LI 
Sbjct: 96  VLYMSMIAKGIAPPNNFTFPF-LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIH 154

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
            Y+  G L+L++ +F+     + + Y T++K  ++  + E  L ++ +M    + P E T
Sbjct: 155 LYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFT 214

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFEN------ 185
           +  +   CS L +   G++IHAQV K     DS   +  A+V+ Y KC  G  N      
Sbjct: 215 FVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKC--GLINIAERVF 272

Query: 186 -----------------------EKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSF 218
                                  E  + ++ F  +  R    W ++IS   Q G+  ++ 
Sbjct: 273 STMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEAL 332

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSM 277
           ELFK M   G + D  TL+ +L +   L + +LG R+ H       F ++  +  A++ M
Sbjct: 333 ELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 392

Query: 278 YSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           Y+K  S++ A  +F ++    K   V+N MI+   Q G  + ++ +   ++ +G + D  
Sbjct: 393 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 452

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           T +  + +      IE GK++  ++    G   Q+  +  ++D+        C  + +D 
Sbjct: 453 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGR---YGCLEEAYDL 509

Query: 395 VKT----KTVVSWSSMIKGYVTH 413
           V+        V W +++    TH
Sbjct: 510 VQKMPFEANSVIWRALLSACRTH 532


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 197/595 (33%), Positives = 318/595 (53%), Gaps = 13/595 (2%)

Query: 117 LVYKQMALQS-----MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           L++KQ+   S     ++ +E T+PFV+++C+ L       K+H+ ++  GF +   V  A
Sbjct: 9   LIFKQIPSLSSHTSGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTA 68

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           LV+ Y KC           Q   K L S WNS+IS   ++   ++SF + K M++ G E 
Sbjct: 69  LVDVYSKCCCFHSARLVFDQMPIKSLVS-WNSIISAHCRDFHIDQSFGILKQMQLLGLEL 127

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
            S T    L S     SL  G  +H           L +  +++SMY +L  ++ A  +F
Sbjct: 128 SSATFTGFLASC----SLPQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVF 183

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
             +  K  V W I++  Y  +G   +   +   M       D    +  +S      N+ 
Sbjct: 184 YTLHQKSIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLL 243

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
               +H+ +L++G D++  + N L+ MY +C+DL  AR++FD+V  K+V  W+SMI GY 
Sbjct: 244 LAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYA 303

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 EAL LF+ +       + +T+  +L AC  +G+L   + +  Y +  GL S   
Sbjct: 304 QFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLR 363

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK- 530
           V T++   + KCG I+ A  LF  E+I +KD+  W++MI+ YA HG   +   L+ +M+ 
Sbjct: 364 VQTSLIHMFCKCGSIKKAQALF--ERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQN 421

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           +  ++PD I +  +L AC ++GL+E+G   F+ M++ +G EPS +HY+ +V+LLGRAG++
Sbjct: 422 EVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYV 481

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           + A   +++MP    ARVW P LSAC  H   EL E  A+ L  +EP + GN+VL++N+Y
Sbjct: 482 ELALRTIQEMPVLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLY 541

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
            + GKW   AK R+ +  RGL K PG S IEI   VH   A  QSH ++  I+ +
Sbjct: 542 TSMGKWKEAAKARSIINARGLVKEPGWSQIEIDGAVHVLAAEGQSHLESIDIHEL 596



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 218/467 (46%), Gaps = 14/467 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +I+L G   ++ + + L+D Y+       ++ VF+ +   + + + +I+    +    ++
Sbjct: 53  HILLTGFQAHVFVQTALVDVYSKCCCFHSARLVFDQMPIKSLVSWNSIISAHCRDFHIDQ 112

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +  + KQM L  +  +  T+   + SCS       G  IH  + KLG D    + ++++ 
Sbjct: 113 SFGILKQMQLLGLELSSATFTGFLASCS----LPQGLSIHGYITKLGLDLHLPLANSIMS 168

Query: 175 FYIK---CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            YI+    DG       + Q+        W  ++   +  G   K F +F  MR +    
Sbjct: 169 MYIRLNQIDGALSVFYTLHQKSIVS----WTIILGGYLSAGDVAKVFAVFNQMRCQCVGP 224

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           DS   +NL+       +L L  +VH + + S F     ++  L++MY+K   L  A+ +F
Sbjct: 225 DSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVF 284

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D + +K   +W  MIS Y Q G+P E+L L   ++R+  R +  T    +S+ + M ++ 
Sbjct: 285 DAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLR 344

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            G+++   +L NG    + V  SLI M+C+C  +  A+ +F+ +  K +  WS+MI GY 
Sbjct: 345 MGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYA 404

Query: 412 THDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSL 469
            H    EAL LF +M+ E G++ D +   ++L AC + G +E  +KY        G+   
Sbjct: 405 VHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPS 464

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
               + +     + G +E+A     E  +  +  + W   +SA   H
Sbjct: 465 IQHYSCLVDLLGRAGYVELALRTIQEMPVLVQARV-WAPFLSACYTH 510



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 163/345 (47%), Gaps = 17/345 (4%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C  PQ L  IH  YI   GL  +L L+++++  Y  L  +  +  VF ++   + + +  
Sbjct: 139 CSLPQGLS-IHG-YITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTI 196

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           IL      G+  K   V+ QM  Q + P    +  +I  C    + +    +H+ ++K G
Sbjct: 197 ILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSG 256

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMI--QRKFKDLKSR----WNSLISLAVQNGKSE 215
           FD  D + + LV  Y KC       K ++  +R F  +  +    W S+IS   Q G   
Sbjct: 257 FDHKDPIDNLLVAMYAKC-------KDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPN 309

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++  LF ++    +  +  TL  +L +  E+ SL +G  +    +++    DL V T+L+
Sbjct: 310 EALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLI 369

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADL 334
            M+ K  S++ A+ LF+++ +KD  VW+ MI+ Y   G  KE+L L   M    G + D 
Sbjct: 370 HMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDA 429

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDM 378
               + + + S    IE G +   ++ ++ G +  +  ++ L+D+
Sbjct: 430 IVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDL 474


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 289/482 (59%), Gaps = 4/482 (0%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M ++G E        LL   V  +++  G+ VH   + + +   + ++T L+ +Y+K   
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L  A+ +FD+M +++ V W  MIS Y Q GF  E+L L + M+RS    + FT    +SS
Sbjct: 61  LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSS 120

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +     E G+Q+H+++ +   +  + V +SL+DMY +   ++ AR +F+ +  + VVS 
Sbjct: 121 CTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC 180

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GY       EAL LF  ++ EG+  ++VT  ++L A   + AL+H K +H + ++
Sbjct: 181 TAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLR 240

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             L     +  ++   Y+KCG +  A ++F+   +  + +I+WN+M+  Y+KHG   +  
Sbjct: 241 CELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV--RTVISWNAMLVGYSKHGKGIEVV 298

Query: 524 KLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG-YEPSQEHYASMV 581
           KL+  M++ + V+PD +TFL +L+ C + GL ++G  +F EM       E   EHY  ++
Sbjct: 299 KLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVI 358

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +LLGRAG ++EA EL+K MPF+P A +WG LL AC++HS T + E    +L+ +EPENAG
Sbjct: 359 DLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAG 418

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
           NYV+LSN+YA+AG+W  V  +R  + ++ + K PG SWIE+ + +H F+A+D+SHP+ + 
Sbjct: 419 NYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREE 478

Query: 702 IY 703
           ++
Sbjct: 479 VF 480



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 178/336 (52%), Gaps = 11/336 (3%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           MA+Q      D Y  ++  C        G+++HA ++K  +     +   L+  Y KC+ 
Sbjct: 1   MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60

Query: 182 GFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
                 G  +  F +++ R    W ++IS   Q G + ++  LF  M     E +  T  
Sbjct: 61  -----LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFA 115

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            +L S       ELGR +H      ++   + V ++LL MY+K   + +A+ +F+ + ++
Sbjct: 116 TVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPER 175

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V    +IS Y Q G  +E+LEL   + R G  ++  T  + ++++S +  ++ GKQ+H
Sbjct: 176 DVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVH 235

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           ++VLR    + V + NSLIDMY +C +LN ARKIF+++  +TV+SW++M+ GY  H + +
Sbjct: 236 SHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGI 295

Query: 418 EALRLFSEMKLEG-VEVDFVTIINILPACVNIGALE 452
           E ++LF  M+ E  V+ D VT + +L  C + G LE
Sbjct: 296 EVVKLFKLMREENKVKPDSVTFLAVLSGCSH-GGLE 330



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 177/390 (45%), Gaps = 17/390 (4%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LLN C N + +   Q++HA  I    L   + LS+ LI  Y     L  ++ VF+ +   
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYL-PPVYLSTRLIILYTKCECLGCARHVFDEMRER 74

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + +  ++   S+ G   + L ++ QM      P E T+  V+ SC+    F  G +IH
Sbjct: 75  NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           + + K  +++   VG +L++ Y K  G     +G+    F+ L  R      ++IS   Q
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKA-GRIHEARGV----FECLPERDVVSCTAIISGYAQ 189

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G  E++ ELF  ++ EG   +  T  +LL +   L +L+ G+ VH   +  +    + +
Sbjct: 190 LGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVL 249

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG- 329
             +L+ MYSK  +L  A+ +F+ M  +  + WN M+  Y + G   E ++L   M     
Sbjct: 250 QNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENK 309

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNC 387
            + D  T +A +S  S     + G +M   ++  G + +  +  +  +ID+      +  
Sbjct: 310 VKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEE 369

Query: 388 ARKIFDSVKTK-TVVSWSSMIKGYVTHDQS 416
           A ++   +  + T   W S++     H  +
Sbjct: 370 AFELIKKMPFEPTAAIWGSLLGACRVHSNT 399


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 303/529 (57%), Gaps = 18/529 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I+   ++G S ++   F  MR      +  T    ++S   L  L  G+ +H  A 
Sbjct: 54  WNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAF 113

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           V  +  D+ V +AL+ MYSK   L DA+ LFD++ +++ V W  MIS Y Q+   +E++ 
Sbjct: 114 VFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVF 173

Query: 321 LL-------------MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           L              +  V  G  + L   + +  +   +K++   + +H   ++ G + 
Sbjct: 174 LFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVT--ECVHGLAVKKGFEG 231

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            ++V N+L+D Y +C +++ +RK+FD ++   V SW+S+I  Y  +  S+EA  LFS+M 
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 428 LEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
             G V  + VT+  +L AC + GAL+  K +H   +K+ L     V T+I   Y KCG +
Sbjct: 292 KRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRV 351

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           EMA + FD  ++  K++ +W  M++ Y  HG   +  K++ +M +  ++P+ ITF+ +L 
Sbjct: 352 EMARKAFD--RLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLA 409

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC +AGL++EG   F +MK  +  EP  EHY+ MV+LLGRAG++ EA  L+++M  KPD 
Sbjct: 410 ACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDF 469

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            VWG LL AC++H   EL E++A KL  ++P N G YVLLSNIYA AG+W+ V +MR  +
Sbjct: 470 IVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILM 529

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           ++ GL KTPG S +E    VH F   D+ HPQ + IY  L  L +++ E
Sbjct: 530 KNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQE 578



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 246/515 (47%), Gaps = 60/515 (11%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +I+ + ++ G+  + L  +  M   S++P   T+P  I+SCS L D  +G++IH Q  
Sbjct: 54  WNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAF 113

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKS 214
             G+ S   V  AL++ Y KC  G+ N+    ++ F ++  R    W S+IS  VQN ++
Sbjct: 114 VFGYGSDIFVASALIDMYSKC--GYLNDA---RKLFDEIPERNVVSWTSMISGYVQNERA 168

Query: 215 EKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSL----------ELGRIVHCVAVVSD 263
            ++  LFK  + ++  ++D    + +   +V L  +           +   VH +AV   
Sbjct: 169 REAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKG 228

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F   L+V   L+  Y+K   +  ++ +FD M + D   WN +I+ Y Q+G   E+  L  
Sbjct: 229 FEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFS 288

Query: 324 CMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
            MV+ G  R +  T  A + + +    ++ GK +H  V++   +  + V  S++DMYC+C
Sbjct: 289 DMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKC 348

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +  ARK FD +K K V SW+ M+ GY  H    EA+++F EM   G++ +++T +++L
Sbjct: 349 GRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVL 408

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC + G L+      G+                + +  KC         FD E      
Sbjct: 409 AACSHAGLLK-----EGWH---------------WFNKMKCE--------FDVE----PG 436

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I  ++ M+    + G   + + L  +MK   V+PD I +  LL AC     VE G I  +
Sbjct: 437 IEHYSCMVDLLGRAGYLKEAYGLIQEMK---VKPDFIVWGSLLGACRIHKNVELGEISAR 493

Query: 563 EMKESYGYEPSQ-EHYASMVNLLGRAGHMDEAREL 596
           ++   +  +PS   +Y  + N+   AG  D+   +
Sbjct: 494 KL---FKLDPSNCGYYVLLSNIYADAGRWDDVERM 525



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 389 RKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           R +F     KT V SW+S+I  +     SL+AL  FS M+   +  +  T    + +C +
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  L   K +H  +   G  S   V +A+   Y+KCG +  A +LFDE  I  +++++W 
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDE--IPERNVVSWT 156

Query: 508 SMISAYAKH 516
           SMIS Y ++
Sbjct: 157 SMISGYVQN 165



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 118/253 (46%), Gaps = 6/253 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G    L + + L+D+YA  G +S+S++VF+ +   +   + +++   ++ G   +   ++
Sbjct: 228 GFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLF 287

Query: 120 KQMALQS--MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
             M  +    Y A  T   V+ +C+       G+ IH QVVK+  +    VG ++V+ Y 
Sbjct: 288 SDMVKRGEVRYNAV-TLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYC 346

Query: 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           KC       K   + K K++KS W  +++    +G  +++ ++F  M   G + +  T +
Sbjct: 347 KCGRVEMARKAFDRLKRKNVKS-WTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFV 405

Query: 238 NLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           ++L +      L+ G    + +    D    +   + ++ +  +   L++A  L  +M  
Sbjct: 406 SVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKV 465

Query: 297 K-DRVVWNIMISA 308
           K D +VW  ++ A
Sbjct: 466 KPDFIVWGSLLGA 478



 Score = 42.4 bits (98), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 88/194 (45%), Gaps = 34/194 (17%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L  NL++ ++++D Y   G + ++++ F+ +   N   +  ++      G  ++ + V+ 
Sbjct: 331 LEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFY 390

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           +M    + P   T+  V+ +CS           HA ++K G+  F+          +KC+
Sbjct: 391 EMIRCGIKPNYITFVSVLAACS-----------HAGLLKEGWHWFNK---------MKCE 430

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
             F+ E G+           ++ ++ L  + G  ++++ L + M+++      G+L+   
Sbjct: 431 --FDVEPGI---------EHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGAC 479

Query: 241 RSTVELKSLELGRI 254
           R     K++ELG I
Sbjct: 480 RIH---KNVELGEI 490


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 208/663 (31%), Positives = 364/663 (54%), Gaps = 15/663 (2%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L +++ +S+ L+  Y   G +S + +VF  +   N + + ++++  S  G  E+  L+  
Sbjct: 215 LVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 121 QMALQ----SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
           QM  +    +  P   T   V+  C+   +   G+ +H   +KL  D    V +AL++ Y
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMY 334

Query: 177 IKCDGGFENEKGMIQR--KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF--D 232
            KC  G  N+  +I +    K++ S WN+++      G   K+F+L + M   G +   D
Sbjct: 335 SKC--GCINDAQVIFKLNNNKNVVS-WNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRAD 391

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS-VNTALLSMYSKLASLEDAKMLF 291
             T++N +    E   L   + +HC ++  +F  +   V  A ++ Y+K  SL  A  +F
Sbjct: 392 EVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVF 451

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
             +  K    WN +I  Y QS  P+ SL+    M  SG   DLFT  + +S+ S +K+++
Sbjct: 452 CSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLK 511

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GK++H  ++RN  +    V+ SL+ +Y  C +L+ A  +FD+++ KT+VSW++M+ GY+
Sbjct: 512 LGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYL 571

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +     AL LF +M L GV+   ++++++  AC  + +L   +  HGY++K  L   + 
Sbjct: 572 QNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF 631

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +  ++   YAK G +  + ++F+   +  + + +WN+M+  Y  HG   +  KL+ +M++
Sbjct: 632 IACSVIDMYAKNGSVMESFKVFN--GLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQR 689

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           +   PD +TFLG+LTAC ++GLV EG     +MK  +G  P+ +HYA ++++L RAG +D
Sbjct: 690 TGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLD 749

Query: 592 EAREL-VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           EA ++  ++M  +P   +W  LLS+C++H   E+ E  A KL   EPE   NYVLLSN+Y
Sbjct: 750 EALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLY 809

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           A +GKW+ V K+R  +++  L+K  GCSWIE+   V  F A + S    + I ++  +LE
Sbjct: 810 AGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLE 869

Query: 711 LEI 713
            EI
Sbjct: 870 REI 872



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 147/525 (28%), Positives = 257/525 (48%), Gaps = 32/525 (6%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L  + +L + +I  Y+  G    S+ VF+++   N   +  ++ + S+   Y   L ++ 
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFV 172

Query: 121 QMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           +M  +S + P   T+P V+++C+ + +   G  +H  VVK        V +ALV FY   
Sbjct: 173 KMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFY--- 229

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEF---- 231
             G         R FK +  R    WNS+I +   NG SE+ F L   M  +  E     
Sbjct: 230 --GTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTP 287

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D  TL  +L      + + +G+ VH +A+     K++ VN AL+ MYSK   + DA+++F
Sbjct: 288 DVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIF 347

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG--FRADLFTAIAAVSSI---ST 346
              ++K+ V WN M+  +  +G   ++ +LL  M+  G   RAD  T + AV      S 
Sbjct: 348 KLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESV 407

Query: 347 MKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           + N+   K++H   L+    +    V N+ +  Y +C  L+ A ++F S+++KTV SW++
Sbjct: 408 LPNL---KELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNA 464

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I GY        +L  + +MK  G+  D  T+ ++L AC  I +L+  K +HG  ++  
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR 524

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L   S V  ++   Y  CG +  A  LFD   ++ K +++WN+M++ Y ++G   +   L
Sbjct: 525 LERDSFVYISLLSLYIHCGELSTAHVLFD--AMEDKTLVSWNTMVNGYLQNGFPERALSL 582

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           + QM    V+P  I+ + +  AC     +  GR       E++GY
Sbjct: 583 FRQMVLYGVQPCEISMMSVFGACSLLPSLRLGR-------EAHGY 620



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 201/414 (48%), Gaps = 16/414 (3%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
           D   G KIH  V +    S DDV    ++  Y  C G  ++ + +     K    +WN++
Sbjct: 96  DIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMC-GSPDDSRSVFDALRKKNLFQWNAV 154

Query: 205 ISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           IS   +N       E+F K++   G   D+ T   ++++   +  +++G  VH + V + 
Sbjct: 155 ISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTR 214

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
             +D+ V+ AL+S Y    S+ DA  +F  M +++ V WN MI  +  +G  +E   LL 
Sbjct: 215 LVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 324 CMVRS----GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            M+       F  D+ T    +   +  + I  GK +H   ++   D +V V+N+L+DMY
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMY 334

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVDFVT 437
            +C  +N A+ IF     K VVSW++M+ G+       +   L  +M   G  +  D VT
Sbjct: 335 SKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVT 394

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGL---NSLSSVNTAIFISYAKCGCIEMAGELFD 494
           I+N +P C     L ++K LH YS+K      N L  V  A   SYAKCG +  A  +F 
Sbjct: 395 ILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNEL--VANAFVASYAKCGSLSYAHRVFC 452

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
              I SK + +WN++I  Y++  D       Y QMK S + PDL T   LL+AC
Sbjct: 453 --SIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSAC 504



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 145/299 (48%), Gaps = 5/299 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           +L+++H   +    +H N ++++  + SYA  G LS + +VF SI S     +  ++   
Sbjct: 410 NLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGY 469

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV--KLGFDS 164
           S+  +   +L  Y QM    + P   T   ++ +CS +     G+++H  ++  +L  DS
Sbjct: 470 SQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDS 529

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
           F  V  +L+  YI C G       +           WN++++  +QNG  E++  LF+ M
Sbjct: 530 F--VYISLLSLYIHC-GELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQM 586

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
            + G +    +++++  +   L SL LGR  H  A+      +  +  +++ MY+K  S+
Sbjct: 587 VLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSV 646

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
            ++  +F+ + ++    WN M+  Y   G  KE+++L   M R+G   D  T +  +++
Sbjct: 647 MESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTA 705


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 200/669 (29%), Positives = 362/669 (54%), Gaps = 35/669 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +HA Y++  GL   + ++++L+D Y   GL   +++VF+ I   N + + +++ N ++
Sbjct: 201 KSVHA-YVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQ 259

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + +  + +M ++ + P + T    + + + L     G++ HA  V  G +  + +
Sbjct: 260 NGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNIL 319

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G +L+ FY K  G  E+ + +     +     WN L+S  V NG  +++ +L  +M+ E 
Sbjct: 320 GSSLINFYSKV-GLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSEN 378

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
             FDS TL +++ +  + ++L+LG+  H   V ++   D++V ++++ MY+K   LE A+
Sbjct: 379 LRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECAR 438

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD  + +D ++WN +++AY + G   E+L+L   M   G   ++              
Sbjct: 439 RVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNV-------------- 484

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            I W   +   +L  G   Q        D + E + L              +++W+++I 
Sbjct: 485 -ISWNSVI-LGLLNKGKVDQAK------DTFMEMQSLGIC---------PNLITWTTLIC 527

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G   +    EA   F  M+  G++ + ++I ++L AC  + +L H + +H Y  +  L+ 
Sbjct: 528 GLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSV 587

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            + V  ++   YAKCG I  A  +FD   I  K++  +N+MIS YA HG   +   L+ +
Sbjct: 588 STPVLCSLVNMYAKCGSINQAKRVFD--MILKKELPVYNAMISGYALHGQAVEALSLFRR 645

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           +K+  ++PD ITF  +L+AC +AGLV EG  +F +M  ++      EHY  +V++L R+ 
Sbjct: 646 LKEECIKPDEITFTSILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSILSRSH 705

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
           ++DEA  ++  MPF+PDA ++G LL+AC+ H + EL E   E+L+ +EP+N+GNYV LSN
Sbjct: 706 NLDEALRIILGMPFEPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYVALSN 765

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
            YAA G W+  +K+R  +++R L K PG S I+IG   H F+A D+SH +   IY +L +
Sbjct: 766 AYAATGMWDEASKVRGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTKEIYMMLAL 825

Query: 709 LELEIMEGR 717
           L +E+   R
Sbjct: 826 LRVEMQFTR 834



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/576 (25%), Positives = 283/576 (49%), Gaps = 39/576 (6%)

Query: 49  QQIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           QQIH R I+ +G  + +N  + + L+  Y+      ++ ++F  +   N   +  I+   
Sbjct: 98  QQIHGR-ILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQVQNEFSWAAIMGLK 156

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           S+ G  ++ L+ +++M    +       P   ++   L     G+ +HA VVK+G     
Sbjct: 157 SRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAYVVKMGLGGCI 216

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V  +L++ Y KC G  E  K +  +  +     WNS+I    QNG + ++ E F  MR+
Sbjct: 217 YVATSLLDMYGKC-GLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEAVETFYEMRV 275

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG      TL + L ++  L  ++ G+  H +AV+S       + ++L++ YSK+  +ED
Sbjct: 276 EGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINFYSKVGLVED 335

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+++F +M +KD V WN+++S Y  +G    +L+L   M     R D  T  + +++ + 
Sbjct: 336 AELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAAD 395

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            +N++ GK+ H+  +RN  +  V+V +S+IDMY +CE L CAR++FD+   + ++ W+++
Sbjct: 396 SRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTL 455

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           +  Y     S E L+LF +M+LEG+  + ++  +++   +N G ++  K        LG+
Sbjct: 456 LAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGI 515

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                                              ++ITW ++I   A++G   + F  +
Sbjct: 516 ---------------------------------CPNLITWTTLICGLAQNGLGDEAFLTF 542

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M+++ ++P+ ++   LL+AC     +  GR I   +   +    S     S+VN+  +
Sbjct: 543 QSMEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITR-HELSVSTPVLCSLVNMYAK 601

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            G +++A+  V DM  K +  V+  ++S   +H + 
Sbjct: 602 CGSINQAKR-VFDMILKKELPVYNAMISGYALHGQA 636



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 266/541 (49%), Gaps = 20/541 (3%)

Query: 88  FNSITSPNSLLYGTILKNLS---KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           F+ I S   + Y + L ++S   K G   + L +   + L+ +    D Y  +++ C   
Sbjct: 32  FSQIASNVQISYKSYLNHISSLCKQGHLLEALDLVTDLELEDITIGPDVYGELLQGCVYE 91

Query: 145 LDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-- 200
                G++IH +++K G      + +   LV FY KCD     E  +  R F  L+ +  
Sbjct: 92  RALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCD-----ESEIANRLFGKLQVQNE 146

Query: 201 --WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             W +++ L  + G ++++   F+ M   G   D+  +    +++  L+ +  G+ VH  
Sbjct: 147 FSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKSVHAY 206

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            V       + V T+LL MY K    E+AK +FDK+ +K+ V WN MI  + Q+G   E+
Sbjct: 207 VVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNIVAWNSMIVNFTQNGLNAEA 266

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           +E    M   G      T  + +S+ + +  I+ GKQ HA  + +G +    + +SLI+ 
Sbjct: 267 VETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILGSSLINF 326

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +   +  A  +F  +  K  V+W+ ++ GYV +     AL L   M+ E +  D VT+
Sbjct: 327 YSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTL 386

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +I+ A  +   L+  K  H + ++  L S  +V ++I   YAKC  +E A  +FD    
Sbjct: 387 ASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATA- 445

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             +D+I WN++++AYA+ G   +  KL+ QM+   + P++I++  ++   +N G V++ +
Sbjct: 446 -KRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAK 504

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSA 615
             F EM +S G  P+   + +++  L + G  DEA    + M     KP++     LLSA
Sbjct: 505 DTFMEM-QSLGICPNLITWTTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSISSLLSA 563

Query: 616 C 616
           C
Sbjct: 564 C 564


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 213/693 (30%), Positives = 370/693 (53%), Gaps = 44/693 (6%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    L+       +H  Y++  GL   + ++S+L D Y   G+L  + +VF
Sbjct: 173 NFVVPNVCKACGALKWSRFGRGVHG-YVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N++ +  ++    + G+ E+ + ++  M  Q + P   T    + + + +    
Sbjct: 232 DEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVE 291

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  +  G +  + +G +L+ FY K  G  E  + +  R F+     WN +IS  
Sbjct: 292 EGKQSHAIAIVNGMELDNILGTSLLNFYCKV-GLIEYAEMVFDRMFEKDVVTWNLIISGY 350

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  E +  + +LMR+E  ++D  TL  L+ +    ++L+LG+ V C  +   F  D+
Sbjct: 351 VQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDI 410

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + + ++ MY+K  S+ DAK +FD   +KD ++WN +++AY +SG   E+L L   M   
Sbjct: 411 VLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLE 470

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   ++ T    + S+                LRNG   QV   +   DM+ + +     
Sbjct: 471 GVPPNVITWNLIILSL----------------LRNG---QV---DEAKDMFLQMQS---- 504

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
                S     ++SW++M+ G V +  S EA+    +M+  G+  +  +I   L AC ++
Sbjct: 505 -----SGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHL 559

Query: 449 GALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            +L   + +HGY ++ L  +SL S+ T++   YAKCG I  A ++F   K+ S+  ++ N
Sbjct: 560 ASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGS-KLYSELPLS-N 617

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +MISAYA +G+  +   LY  ++   ++PD IT   +L+AC +AG + +   IF ++   
Sbjct: 618 AMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSK 677

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
              +P  EHY  MV+LL  AG  ++A  L+++MPFKPDAR+   L+++C    +TEL + 
Sbjct: 678 RSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDY 737

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG--KL 685
            + KL+  EPEN+GNYV +SN YA  G W+ V KMR  ++ +GLKK PGCSWI+I   + 
Sbjct: 738 LSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEG 797

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIMEGRR 718
           VH F A D++H + + I  +L +L  ++  G +
Sbjct: 798 VHVFVANDKTHTRINEIQMMLALLLYDMGTGSK 830



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 149/530 (28%), Positives = 271/530 (51%), Gaps = 11/530 (2%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           SP+S  Y   + +L K GE ++ L +  +M  +++    + Y  +++ C    D  +G++
Sbjct: 32  SPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQ 91

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           IHA+++K G  +   + +   LV FY KCD     E    + + +++ S W ++I +  +
Sbjct: 92  IHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFS-WAAIIGVKCR 150

Query: 211 NGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            G  E +   F  M +E   F D+  + N+ ++   LK    GR VH   V S     + 
Sbjct: 151 IGLCEGALMGFVEM-LENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVF 209

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V ++L  MY K   L+DA  +FD++ D++ V WN ++  Y Q+G  +E++ L   M + G
Sbjct: 210 VASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQG 269

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
                 T    +S+ + M  +E GKQ HA  + NG +    +  SL++ YC+   +  A 
Sbjct: 270 VEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAE 329

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +FD +  K VV+W+ +I GYV      +A+ +   M+LE ++ D VT+  ++ A     
Sbjct: 330 MVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTE 389

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L+  K +  Y ++    S   + + +   YAKCG I  A ++FD      KD+I WN++
Sbjct: 390 NLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTV--EKDLILWNTL 447

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           ++AYA+ G   +  +L+  M+   V P++IT+  ++ + +  G V+E + +F +M+ S G
Sbjct: 448 LAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSS-G 506

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
             P+   + +M+N + + G  +EA   ++ M     +P+A      LSAC
Sbjct: 507 IIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSAC 556


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 166/494 (33%), Positives = 295/494 (59%), Gaps = 4/494 (0%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M ++G E +     ++L   +   ++  G+ VH   + + +   + + T L+ +Y+K   
Sbjct: 468 MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 527

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L DA+ + D+M +++ V W  MIS Y Q G+  E+L L + M+ SG   + FT    ++S
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            ++    + G+Q+H+ V++   +  + V +SL+DMY +   +  AR++FD +  + VVS 
Sbjct: 588 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 647

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GY       EAL LF  ++ EG+  ++VT  ++L A   + AL+H + +H + ++
Sbjct: 648 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 707

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             L     +  ++   Y+KCG +  +  +FD   +  + +I+WN+M+  Y+KHG   +  
Sbjct: 708 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD--SMPERTVISWNAMLVGYSKHGLGREAV 765

Query: 524 KLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYASMV 581
           +L+  MK+ + V+PD +TFL +L+ C + G+ + G  IF EM  +  G+EP  EHY  +V
Sbjct: 766 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 825

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +L GRAG ++EA E +K MPF+P A +WG LL AC++H    + E  A +L+ +E ENAG
Sbjct: 826 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 885

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
           NYV+LSN+YA+AG+W+ V  +R  ++++ + K PG SWIE+ + +H F A+D+SHP+ + 
Sbjct: 886 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 945

Query: 702 IYTILGILELEIME 715
           ++  +  L ++I E
Sbjct: 946 VFAKVRELSIKIKE 959



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/539 (26%), Positives = 252/539 (46%), Gaps = 54/539 (10%)

Query: 85  QQVFNSITSPNS---LLYGTI------LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
           +QV +SI++P S   +L  T       LK L    + ++ LL   +M +Q +      Y 
Sbjct: 425 KQVLSSISNPFSRQRILLSTFPANSPDLKTLCSNRQLKEALL---EMGIQGLEVEFQGYD 481

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
            V+  C        G+++HA ++K  ++    +   L+  Y KC    +  + + +   +
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           ++ S W ++IS   Q G + ++  LF  M M G   +  T   +L S       +LGR +
Sbjct: 542 NVVS-WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H + + + F   + V ++LL MY+K   + +A+ +FD + ++D V    +IS Y Q G  
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLD 660

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+L+L   + R G R++  T  + ++++S +  ++ G+Q+H++VLR    + V + NSL
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSL 720

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVD 434
           IDMY +C  L  +R+IFDS+  +TV+SW++M+ GY  H    EA+ LF  MK E  V+ D
Sbjct: 721 IDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPD 780

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VT + +L  C            HG     GL                    E+  E+ +
Sbjct: 781 SVTFLAVLSGCS-----------HGGMEDRGL--------------------EIFYEMVN 809

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
           ++     +I  +  ++  + + G   + F+    +K+    P    +  LL AC     V
Sbjct: 810 QKDGFEPEIEHYGCVVDLFGRAGRVEEAFEF---IKKMPFEPTAAIWGSLLGACRVHQNV 866

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE---ARELVKDMP-FKPDARVW 609
             G  + + + E      +  +Y  + NL   AG  D+    REL+K+    K   R W
Sbjct: 867 HIGEFVARRLLEI--ESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSW 923



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 174/373 (46%), Gaps = 14/373 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++HA ++I       + L + LI  Y     L  +++V + +   N + +  ++   S+
Sbjct: 497 QRVHA-HMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQ 555

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L ++ +M +    P E T+  V+ SC+    F  G +IH+ V+K  F+S   V
Sbjct: 556 RGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFV 615

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G +L++ Y K     E      +R F  L  R      ++IS   Q G  E++ +LF+ +
Sbjct: 616 GSSLLDMYAKAGKICE-----ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 670

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           + EG   +  T  ++L +   L +L+ GR VH   + +     + +  +L+ MYSK  SL
Sbjct: 671 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSL 730

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSS 343
             ++ +FD M ++  + WN M+  Y + G  +E++EL   M      + D  T +A +S 
Sbjct: 731 TYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSG 790

Query: 344 ISTMKNIEWGKQMHANVL--RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTV 400
            S     + G ++   ++  ++G + ++  +  ++D++     +  A +    +    T 
Sbjct: 791 CSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTA 850

Query: 401 VSWSSMIKGYVTH 413
             W S++     H
Sbjct: 851 AIWGSLLGACRVH 863


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 197/674 (29%), Positives = 358/674 (53%), Gaps = 22/674 (3%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +++L    ++     G L+ +  +F+ +   N + + +++   ++ G  E  L ++  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P +      + +C+ L    +GE++H+  V+ GF     +G  L+E Y +C G  
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRC-GSL 165

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              K +  R        + SLIS   +NG+ E + E    M  +G + +  T+  +L + 
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSV--NTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
             +    LG+ +H   +     +  SV  +TAL+  YS+    + AK +FD +  K+ V 
Sbjct: 226 PRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVS 281

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W  M+  Y + G  +E+L++   M+  G   + F A++ V  +    +I  G+Q+H + +
Sbjct: 282 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEF-ALSIV--LGACGSIGLGRQLHCSAI 338

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++     + V N+L+ MY     +     + + ++   +VSW++ I     +    +A+ 
Sbjct: 339 KHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 398

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           L  +M  EG   +     ++L +C ++ +L+     H  ++KLG +S      A+   Y+
Sbjct: 399 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 458

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  A   FD   + + D+ +WNS+I  +A+HGD ++  +++++M+ + ++PD  TF
Sbjct: 459 KCGQMGSARLAFD--VMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTF 516

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           LG+L  C ++G+VEEG + F+ M + Y + P+  HYA M+++LGR G  DEA  ++ DMP
Sbjct: 517 LGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 576

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           F+PDA +W  LL++CK+H   ++ +L A++L+ +   ++ +YVL+SNIYA  G+W    K
Sbjct: 577 FEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARK 636

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL--------ELEI 713
           +R  + + G+KK  GCSWIEI   VH F + D SHP +D+IY +LG L        ELE 
Sbjct: 637 VRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQDFDELEP 696

Query: 714 --MEGRRESSEELK 725
             +E R E +E LK
Sbjct: 697 FDIEVRHEGNEVLK 710



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 154/321 (47%), Gaps = 10/321 (3%)

Query: 37  SLLNLCENPQHL-QQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           ++L  C  P+ L QQIH   I   GL  Q++  S+ LID Y+  G   L++ VF+S+   
Sbjct: 220 TILTAC--PRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCK 277

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + + ++++   + G  E+ L V+  M  + + P E     V+ +C  +     G ++H
Sbjct: 278 NVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG---LGRQLH 334

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGK 213
              +K    +   V +AL+  Y +  G  E  + M+ + +  DL S W + IS   QNG 
Sbjct: 335 CSAIKHDLITDIRVSNALLSMYGRT-GLVEELEAMLNKIENPDLVS-WTTAISANFQNGF 392

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            EK+  L   M  EG   +     ++L S  ++ SL+ G   HC+A+      ++    A
Sbjct: 393 GEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNA 452

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MYSK   +  A++ FD M   D   WN +I  + Q G   ++LE+   M  +G + D
Sbjct: 453 LINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPD 512

Query: 334 LFTAIAAVSSISTMKNIEWGK 354
             T +  +   +    +E G+
Sbjct: 513 DSTFLGVLMGCNHSGMVEEGE 533



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 12/266 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H    I H L  ++ +S+ L+  Y   GL+   + + N I +P+ + + T +    +
Sbjct: 331 RQLHCS-AIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQ 389

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  EK + +  QM  +   P    +  V+ SC+ +     G + H   +KLG DS    
Sbjct: 390 NGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICT 449

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G+AL+  Y KC      + G  +  F  + +     WNSLI    Q+G + K+ E+F  M
Sbjct: 450 GNALINMYSKC-----GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKM 504

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLAS 283
           R  G + D  T + +L        +E G +   + +    F    S    ++ M  +   
Sbjct: 505 RSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGR 564

Query: 284 LEDA-KMLFDKMSDKDRVVWNIMISA 308
            ++A +M+ D   + D ++W  ++++
Sbjct: 565 FDEALRMINDMPFEPDALIWKTLLAS 590


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 202/679 (29%), Positives = 361/679 (53%), Gaps = 23/679 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +H + II  G    +  ++ L++ YA  G L+ +  +FN+I   + + + +++   S+
Sbjct: 34  RAVHGQ-IIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92

Query: 109 FGEYEKTLLV---YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            G    +  V   +++M  Q + P   T   + ++ S L     G + HA VVK+   SF
Sbjct: 93  NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKM--SSF 150

Query: 166 DD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
            D  V  +LV  Y  C  G   E G+  + F  +  R    W++++S     G+ E++ +
Sbjct: 151 GDIYVDTSLVGMY--CKAGLV-EDGL--KVFAYMPERNTYTWSTMVSGYATRGRVEEAIK 205

Query: 220 LFKLM---RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +F L    + EG++ D      +L S      + LGR +HC+ + +     ++++ AL++
Sbjct: 206 VFNLFLREKEEGSDSDY-VFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVT 264

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MYSK  SL +A  +FD   D++ + W+ M++ Y Q+G   E+++L   M  +G +   +T
Sbjct: 265 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYT 324

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            +  +++ S +  +E GKQ+H+ +L+ G +  +    +L+DMY +   L  ARK FD ++
Sbjct: 325 IVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQ 384

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + V  W+S+I GYV +  + EAL L+  MK  G+  +  T+ ++L AC ++  LE  K 
Sbjct: 385 ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ 444

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +HG+++K G      + +A+   Y+KCG +E    +F   +  +KD+++WN+MIS  + +
Sbjct: 445 VHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVF--RRTPNKDVVSWNAMISGLSHN 502

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +  +L+ +M    + PD +TF+ +++AC + G VE G   F  M +  G +P  +H
Sbjct: 503 GQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDH 562

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA MV+LL RAG + EA+E ++         +W  LLSACK H + EL     EKL+++ 
Sbjct: 563 YACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALG 622

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
              +  YV LS IY A G+   V ++   +R  G+ K  GCSWIE+    H F   D  H
Sbjct: 623 SRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMH 682

Query: 697 PQADAIYTILGILELEIME 715
           P  +    ++ ++  +++E
Sbjct: 683 PMIEETKDLVCLVSRQMIE 701



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 158/519 (30%), Positives = 270/519 (52%), Gaps = 26/519 (5%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSL 204
           + ++G  +H Q+++ G  +     + LV FY KC G       +      KD+ S WNSL
Sbjct: 29  NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKC-GKLAKAHSIFNAIICKDVVS-WNSL 86

Query: 205 ISLAVQNGKSEKSF---ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           I+   QNG    S+   +LF+ MR +    ++ TL  + ++   L+S  +GR  H + V 
Sbjct: 87  ITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVK 146

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
                D+ V+T+L+ MY K   +ED   +F  M +++   W+ M+S Y   G  +E++++
Sbjct: 147 MSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKV 206

Query: 322 LMCMVR---SGFRAD-LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
               +R    G  +D +FTA+  +SS++    +  G+Q+H   ++NG    V++ N+L+ 
Sbjct: 207 FNLFLREKEEGSDSDYVFTAV--LSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVT 264

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY +CE LN A K+FDS   +  ++WS+M+ GY  + +SLEA++LFS M   G++    T
Sbjct: 265 MYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYT 324

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           I+ +L AC +I  LE  K LH + +KLG        TA+   YAK GC+  A + FD   
Sbjct: 325 IVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFD--C 382

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  +D+  W S+IS Y ++ D  +   LY +MK + + P+  T   +L AC +   +E G
Sbjct: 383 LQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442

Query: 558 RIIFKE-MKESYGYE-PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           + +    +K  +G E P     ++M +   + G +++   + +  P K D   W  ++S 
Sbjct: 443 KQVHGHTIKHGFGLEVPIGSALSTMYS---KCGSLEDGNLVFRRTPNK-DVVSWNAMISG 498

Query: 616 CKMHSETELA-ELTAEKLI-SMEPENAGNYVLLSNIYAA 652
              + + + A EL  E L   MEP++    V   NI +A
Sbjct: 499 LSHNGQGDEALELFEEMLAEGMEPDD----VTFVNIISA 533



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 143/283 (50%), Gaps = 11/283 (3%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +LN C +  +L+   Q+H+ +++  G  ++L  ++ L+D YA  G L+ +++ F+ +   
Sbjct: 328 VLNACSDICYLEEGKQLHS-FLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQER 386

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +  L+ +++    +  + E+ L++Y++M    + P + T   V+++CS L     G+++H
Sbjct: 387 DVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVH 446

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
              +K GF     +G AL   Y KC G  E+   + +R        WN++IS    NG+ 
Sbjct: 447 GHTIKHGFGLEVPIGSALSTMYSKC-GSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQG 505

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVN-- 271
           +++ ELF+ M  EG E D  T +N++ +      +E G       ++SD    D  V+  
Sbjct: 506 DEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFY--FNMMSDQIGLDPKVDHY 563

Query: 272 TALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSG 313
             ++ + S+   L++AK   +  + D    +W I++SA    G
Sbjct: 564 ACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHG 606



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S  +N+  G+ +H  ++R G+   +   N L++ Y +C  L  A  IF+++  K VVSW+
Sbjct: 25  SQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWN 84

Query: 405 SMIKGYVTH---DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           S+I GY  +     S   ++LF EM+ + +  +  T+  I  A  ++ +    +  H   
Sbjct: 85  SLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALV 144

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG---D 518
           +K+       V+T++   Y K G +E   ++F    +  ++  TW++M+S YA  G   +
Sbjct: 145 VKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVF--AYMPERNTYTWSTMVSGYATRGRVEE 202

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
             + F L+ + K+     D + F  +L++      V  GR I
Sbjct: 203 AIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQI 243


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 347/648 (53%), Gaps = 12/648 (1%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +++L    ++     G L+ +  +F+ +   N + + +++   ++ G  E  L ++  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P +      + +C+ L    +GE++H+  V+ GF     +G  L+E Y +C G  
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRC-GSL 165

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
              K +  R        + SLIS   +NG+ E + E    M  +G + +  T+  +L + 
Sbjct: 166 PAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSV--NTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
             +    LG+ +H   +     +  SV  +TAL+  YS+    + AK +FD +  K+ V 
Sbjct: 226 PRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVS 281

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W  M+  Y + G  +E+L++   M+  G   + F A++ V  +    +I  G+Q+H + +
Sbjct: 282 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEF-ALSIV--LGACGSIGLGRQLHCSAI 338

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           ++     + V N+L+ MY     +     + + ++   +VSW++ I     +    +A+ 
Sbjct: 339 KHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIA 398

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           L  +M  EG   +     ++L +C ++ +L+     H  ++KLG +S      A+   Y+
Sbjct: 399 LLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYS 458

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +  A   FD   + + D+ +WNS+I  +A+HGD ++  +++++M+ + ++PD  TF
Sbjct: 459 KCGQMGSARLAFD--VMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTF 516

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           LG+L  C ++G+VEEG + F+ M + Y + P+  HYA M+++LGR G  DEA  ++ DMP
Sbjct: 517 LGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMP 576

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           F+PDA +W  LL++CK+H   ++ +L A++L+ +   ++ +YVL+SNIYA  G+W    K
Sbjct: 577 FEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARK 636

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +R  + + G+KK  GCSWIEI   VH F + D SHP +D+IY +LG L
Sbjct: 637 VRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGEL 684



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 7/308 (2%)

Query: 49  QQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           QQIH   I   GL  Q++  S+ LID Y+  G   L++ VF+S+   N + + ++++   
Sbjct: 231 QQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYI 290

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G  E+ L V+  M  + + P E     V+ +C  +     G ++H   +K    +   
Sbjct: 291 RDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSI---GLGRQLHCSAIKHDLITDIR 347

Query: 168 VGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           V +AL+  Y +  G  E  + M+ + +  DL S W + IS   QNG  EK+  L   M  
Sbjct: 348 VSNALLSMYGR-TGLVEELEAMLNKIENPDLVS-WTTAISANFQNGFGEKAIALLCQMHS 405

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG   +     ++L S  ++ SL+ G   HC+A+      ++    AL++MYSK   +  
Sbjct: 406 EGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGS 465

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A++ FD M   D   WN +I  + Q G   ++LE+   M  +G + D  T +  +   + 
Sbjct: 466 ARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNH 525

Query: 347 MKNIEWGK 354
              +E G+
Sbjct: 526 SGMVEEGE 533



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 12/266 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H    I H L  ++ +S+ L+  Y   GL+   + + N I +P+ + + T +    +
Sbjct: 331 RQLHCS-AIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQ 389

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  EK + +  QM  +   P    +  V+ SC+ +     G + H   +KLG DS    
Sbjct: 390 NGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICT 449

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
           G+AL+  Y KC      + G  +  F  + +     WNSLI    Q+G + K+ E+F  M
Sbjct: 450 GNALINMYSKC-----GQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKM 504

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLAS 283
           R  G + D  T + +L        +E G +   + +    F    S    ++ M  +   
Sbjct: 505 RSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGR 564

Query: 284 LEDA-KMLFDKMSDKDRVVWNIMISA 308
            ++A +M+ D   + D ++W  ++++
Sbjct: 565 FDEALRMINDMPFEPDALIWKTLLAS 590


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 185/536 (34%), Positives = 294/536 (54%), Gaps = 46/536 (8%)

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KD 267
           ++ GK   +  LF+ +  +    D+ T++  +++     S      +HCVA    F  + 
Sbjct: 108 LRAGKPAHALALFRRVLRDRLPADARTIVFAVKAAT--TSSSPAEAIHCVAFKRGFIGQS 165

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V  AL+ MY+   SL DA+ LFD+M+D+D V W  ++  Y + G P E+  +   MV 
Sbjct: 166 VLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVV 225

Query: 328 SGFR-ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM-------- 378
           +G    +  T +AA S+   +  +  G+ +H  V+ +G    V++ N+L+DM        
Sbjct: 226 AGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVA 285

Query: 379 -----------------------YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
                                  Y +C DL  A K+F  +  +  VSWS M+  Y   + 
Sbjct: 286 SAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANL 345

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE-----HVKYLHGYSMKLGLNSLS 470
             EA+R+F++M   GVE    T++++L AC  +G L+     +  Y+  + ++L +N   
Sbjct: 346 PEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVN--- 402

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            ++ A    +AKCG +  A  LF    ++ K++++WN+MI A+A HG   +   L+ + K
Sbjct: 403 -LSNAFIDMFAKCGDVGAASRLF--RNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFK 459

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
              + PD IT++G+L+AC ++GLV EGR  FKEMK  YG EP  EHYA M++LLG+ G +
Sbjct: 460 AIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLL 519

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           +EA E+ + MP   D   WG LL+AC+MH   E+ +  A+KL+ ++P ++G YVL+S IY
Sbjct: 520 EEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIY 579

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           A+  KW  V  +RT +RDRG+KK PGCS IE+    HEF AAD SH  ++ IY  L
Sbjct: 580 ASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAAL 635



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 144/329 (43%), Gaps = 42/329 (12%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           Q++++ + L+  YA+   L  ++++F+ +   + + + T++   ++ G  ++   V+ +M
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223

Query: 123 ALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD- 180
            +    +P E T      +   +     G  +H  VV+ G     ++ +ALV+ + KC  
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGC 283

Query: 181 -----------------------------GGFENEKGMIQRKFKDLKSR----WNSLISL 207
                                        G  EN      + FK++ +R    W+ +++ 
Sbjct: 284 VASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAG----KLFKEIPNRNAVSWSCMVAA 339

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             Q    E++  +F  M   G E    TL+++L +  +L  L++GR ++   +VS    +
Sbjct: 340 YSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKV-E 398

Query: 268 LSVN--TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           L+VN   A + M++K   +  A  LF  M DK+ V WN MI A+   G  +E+L L    
Sbjct: 399 LTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKF 458

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGK 354
              G   D  T I  +S+ S    +  G+
Sbjct: 459 KAIGIFPDEITYIGVLSACSHSGLVSEGR 487



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++M++G++   +   AL LF  +  + +  D  TI+  + A     +    + +H  + K
Sbjct: 101 ATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATT--SSSPAEAIHCVAFK 158

Query: 464 LGLNSLSS-VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            G    S  V  A+   YA    +  A +LFDE  +  +D+++W +++  YA+ G   + 
Sbjct: 159 RGFIGQSVLVGNALVHMYASSMSLPDARKLFDE--MADRDVVSWTTLVDGYARGGLPDEA 216

Query: 523 FKLYTQMKQSDVR-PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
           ++++ +M  +    P+ +T +   +A    GL+  GR++ + + ES G   S     ++V
Sbjct: 217 WRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVES-GVRMSVNLENALV 275

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++ G+ G +  A+E+   MP K D   W  ++SA
Sbjct: 276 DMFGKCGCVASAKEIFDGMPIK-DVYSWTSMVSA 308



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 39/245 (15%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           YI+ H +   + LS+  ID +A  G +  + ++F ++   N + + T++   +  G+ E+
Sbjct: 391 YIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEE 450

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L ++++     ++P E TY  V+ +CS           H+ +V  G   F ++      
Sbjct: 451 ALHLFQKFKAIGIFPDEITYIGVLSACS-----------HSGLVSEGRYHFKEM------ 493

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
                          I    +     +  +I L  + G  E++FE+ + M +   E   G
Sbjct: 494 --------------KIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWG 539

Query: 235 TLINLLRSTVELKSLELGRIVHCVA--VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
            L+N  R      ++E+G+   C A  +V     D  +   +  +Y+  +     KM+  
Sbjct: 540 ALLNACRMH---GNVEIGK---CAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRT 593

Query: 293 KMSDK 297
            M D+
Sbjct: 594 VMRDR 598


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 339/639 (53%), Gaps = 11/639 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++HA  + L G+  +  L S L  +YA     S +  +F+ ++ P    +  +++   +
Sbjct: 31  KRLHALILTL-GIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQ 89

Query: 109 FGE-YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
            G  ++   L  + +      P + TYP VI++C  L     G  IH Q  K G+DS   
Sbjct: 90  IGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTF 149

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKL 223
           V + L+  Y+        EK   Q  F  ++ R    WN++I+   +N  +E +  ++  
Sbjct: 150 VQNTLLAMYMN-----AGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGR 204

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G E D  T++++L +   LK++ELGR VH +     F  ++ V  AL+ MY K   
Sbjct: 205 MMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQ 264

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           +++A +L   M DKD V W  +I+ Y  +G  + +L L   M   G + +  +  + +S+
Sbjct: 265 MKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSA 324

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
             ++  +  GK +HA  +R   + +V V  +LI+MY +C   N + K+F     K    W
Sbjct: 325 CGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPW 384

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++++ G++ +  + EA+ LF +M ++ V+ D  T  ++LPA   +  L+    +H Y ++
Sbjct: 385 NALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIR 444

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G      V + +   Y+KCG +  A ++F+   +  KDII W+++I+AY KHG      
Sbjct: 445 SGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAV 504

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           KL+ QM QS V+P+ +TF  +L AC +AGLV EG  +F  M + +      +HY  M++L
Sbjct: 505 KLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDL 564

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAG +++A  L++ MP  P+  VWG LL AC +H   EL E+ A     +EPEN GNY
Sbjct: 565 LGRAGRLNDAYNLIRTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKLEPENTGNY 624

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           VLL+ +YAA G+W    ++R  + + GL+K P  S IE+
Sbjct: 625 VLLAKLYAAVGRWGDAERVRDMVNEVGLRKLPAHSLIEV 663


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 202/672 (30%), Positives = 357/672 (53%), Gaps = 5/672 (0%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P ++T P      + +++   E+P    ++HA  +    L  ++   + L+  YA  G  
Sbjct: 104 PDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRA 163

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           + +++VF+ + + + + + +++  L   G  E        M    +     +   V+ +C
Sbjct: 164 ADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPAC 223

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
               D   G  +H  V+K G DS  ++G+ALV+ Y K  G  E+   +     +  +  W
Sbjct: 224 GTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKF-GDLESSMRVFNGMQEKNEVSW 282

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           NS +      G  E   E+F++M        S TL +LL + V+L    LG+ VH  ++ 
Sbjct: 283 NSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIR 342

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
                D+ +  +L+ MY+K   LE A  +F+ +  ++ V WN MI+   Q+G   E+  L
Sbjct: 343 RAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSL 402

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
           ++ M ++G   + FT +  + + S + +++ GKQ+HA  +       + V N+LID+Y +
Sbjct: 403 VIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAK 462

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C  L+ A+ IFD  + K  VS++++I GY       E+L LF +M+  G+E D V+ +  
Sbjct: 463 CGQLSVAQDIFDRSE-KDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGC 521

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L AC N+ A +  K +HG  ++  LN+   +  ++   Y K G +  A ++F+  +I  K
Sbjct: 522 LSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFN--RITRK 579

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+ +WN+MI  Y  HG     F+L+  MK   V  D ++++ +L+AC + GLV+ G+  F
Sbjct: 580 DVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYF 639

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
            +M  +   +P Q HYA MV+LLGRAG + E+ E++ +MPF  ++ VWG LL +C++H +
Sbjct: 640 SQMI-AQNIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGD 698

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            ELA L AE L  ++PE++G Y LL N+Y+ +G WN   +++T ++ R ++K P  SW++
Sbjct: 699 IELARLAAEHLFELKPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQ 758

Query: 682 IGKLVHEFWAAD 693
            G  +  F   D
Sbjct: 759 SGNKLQAFLVGD 770



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 148/610 (24%), Positives = 293/610 (48%), Gaps = 34/610 (5%)

Query: 34  HSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF--NSI 91
           H   L     N   L++ HA  ++   L  +L L+  L+ SYA L  +  ++ +   + +
Sbjct: 7   HVLRLHQCGGNSLLLRRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPL 66

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI--- 148
              ++ L+ ++ + L+  G   + L VY  M    + P + T+PF + + +  +      
Sbjct: 67  RLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAEH 126

Query: 149 --SGEKIHAQVVKLGF---DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNS 203
              G ++HA  ++ G    D F   G+ LV FY       +  +   +   +D+ S WNS
Sbjct: 127 PAKGAELHAAALRRGLLLADVF--AGNTLVTFYAARGRAADARRVFDEMPARDIVS-WNS 183

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           L+S  + NG  E +      M   G   +  +L++++ +    +    G  VH + + S 
Sbjct: 184 LVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSG 243

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
               +++  AL+ MY K   LE +  +F+ M +K+ V WN  +  +  +GF ++ LE+  
Sbjct: 244 LDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFR 303

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M          T  + + ++  +     GK++H   +R   +  + + NSL+DMY +  
Sbjct: 304 VMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFG 363

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L  A  IF++++ + VVSW++MI     +    EA  L  EM+  G   +  T++N+LP
Sbjct: 364 CLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLP 423

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC  + +++  K +H +S+   L S   V+ A+   YAKCG + +A ++FD  +   KD 
Sbjct: 424 ACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSE---KDD 480

Query: 504 ITWNSMISAYAKHGDWSQC----FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR- 558
           +++N++I  Y++    SQC      L+ QM+ + +  D ++F+G L+AC N    ++G+ 
Sbjct: 481 VSYNTLIVGYSQ----SQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKE 536

Query: 559 ---IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              ++ + +  ++ +  +     S+++L  + G +  A ++   +  K D   W  ++  
Sbjct: 537 IHGVLVRRLLNTHPFLAN-----SLLDLYTKGGMLATASKIFNRITRK-DVASWNTMILG 590

Query: 616 CKMHSETELA 625
             MH + ++A
Sbjct: 591 YGMHGQIDVA 600


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 268/445 (60%), Gaps = 9/445 (2%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV----- 326
           T ++ + +     E A +LF  ++D +  ++N MI AY  +     ++ +   M+     
Sbjct: 95  TKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHG 154

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            +    D FT    V S + +   + GKQ+H +V + G      V NSL++MY +C+ L+
Sbjct: 155 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 214

Query: 387 CARKIFDSVKTK--TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            A ++F+ +  +  T+ SW++++ GY       +AL  F  M++ G+E D ++++++LP 
Sbjct: 215 DAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPD 274

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C  +GALE  K++H Y+ K G      V  A+   YAKCG I+    LFD+ K   +D+I
Sbjct: 275 CAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMK--ERDVI 332

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +W++MI   A HG   +  +L+ +M+++ + P +ITF+GLLTAC +AGL+ EG   F+ M
Sbjct: 333 SWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESM 392

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           K  Y  EP  EHY  +VNLLG +G +D+A ELVK MP KPD+ +WG LLS+C+ H   ++
Sbjct: 393 KRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKI 452

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           A +  E L+ +EP + GNYVLLSN+YA  GKW+GV++MR  +R + +KKTPGCS IE+  
Sbjct: 453 AVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 512

Query: 685 LVHEFWAADQSHPQADAIYTILGIL 709
           +V EF + D S P + AI  +L +L
Sbjct: 513 MVQEFASGDDSKPFSKAICRVLKLL 537



 Score =  159 bits (401), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 173/341 (50%), Gaps = 28/341 (8%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           +L  C N   L++IHA +I+   L Q+  L + ++D   + G    +  +F  +  PN+ 
Sbjct: 65  ILKDCPNIVELKKIHA-HIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAF 123

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQM-----ALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           LY  +++       Y   + VYKQM         ++P + T+PFV++SC+ L+ +  G++
Sbjct: 124 LYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 183

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR------WNSLIS 206
           +H  V K G  S   V ++LVE Y+KCD   +       R F+++  R      W +++S
Sbjct: 184 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA-----HRVFEEMTERDATIFSWTAIVS 238

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              + G    + E F+ M+M G E D  +L+++L    +L +LELG+ +H  A  + F +
Sbjct: 239 GYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLR 298

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           ++ V  AL+ MY+K  S++  + LFD+M ++D + W+ MI      G  +E++EL   M 
Sbjct: 299 NICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQ 358

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           ++     + T +  +++ +           HA +L  G  Y
Sbjct: 359 KAKIEPSIITFVGLLTACA-----------HAGLLNEGLRY 388



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 157/355 (44%), Gaps = 24/355 (6%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLR---NGSDYQVSVHNSLIDMYCECEDLNCAR 389
           D+F  I     +    NI   K++HA++++   + S + V+    + + Y E E  N   
Sbjct: 60  DMFVPI-----LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANL-- 112

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-----KLEGVEVDFVTIINILPA 444
            +F  V       +++MI+ Y  +   + A+ ++ +M         +  D  T   ++ +
Sbjct: 113 -LFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKS 171

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C  +   +  K +HG+  K G  S + V  ++   Y KC  ++ A  +F+E       I 
Sbjct: 172 CAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIF 231

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +W +++S YA+ G ++   + + +M+   + PD I+ + +L  C   G +E G+ I    
Sbjct: 232 SWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYA 291

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET-E 623
            ++ G+  +     +++ +  + G +D+ R L   M  + D   W  ++     H    E
Sbjct: 292 DKA-GFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER-DVISWSTMIVGLANHGRARE 349

Query: 624 LAELTAE-KLISMEPENAGNYVLLSNIYAAAGKWN-GVAKMRTFLRDRGLKKTPG 676
             EL  E +   +EP +   +V L    A AG  N G+    +  RD  ++  PG
Sbjct: 350 AIELFQEMQKAKIEP-SIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIE--PG 401


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 191/528 (36%), Positives = 292/528 (55%), Gaps = 39/528 (7%)

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTV---ELKSLELGRIVHCVAVV-SDFCKDLSVN 271
           ++  LF+ +  E    D+ TL+  +++     E  S   G  VHCVA+      + + V 
Sbjct: 120 RASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVALKWGHVAQSVLVG 179

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-F 330
            AL+  Y+   SL  A+ LFD+M D+D V W  ++  Y + G   E+  +   MV +G  
Sbjct: 180 NALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGL 239

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM------------ 378
           + +  T +A VS++  M  + +G+ ++  V   G    V++ N+LIDM            
Sbjct: 240 QPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASARE 299

Query: 379 -------------------YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
                              Y +C DL  A ++FD +  +  VSWS MI  Y   +Q  EA
Sbjct: 300 VFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEA 359

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFI 478
           +RLF  M  EGVE     ++++L AC  +G L+  ++++   +  G   L+ ++  A   
Sbjct: 360 VRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFID 419

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAKCG  + A +LF E  +  +++++WNSMI A+A HG   +  +L+ Q+K + + PD 
Sbjct: 420 VYAKCGDFDAASKLFAE--MAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDE 477

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFLGLL+AC ++GLV EGR  FKEMK  YG EP  EHYA M++LLG+ G ++EA E+ K
Sbjct: 478 ITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAK 537

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MP + D   WG LL+AC+M+   E+ E  A+KL+ + P ++G YVL+S IYA+  KW+ 
Sbjct: 538 GMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQ 597

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           V  +R  +R+RG+KK PGCS IE+    HEF  AD SH  ++ IY  L
Sbjct: 598 VKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHVHSEDIYAAL 645



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 147/325 (45%), Gaps = 29/325 (8%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-----SPNSLLYG 100
            H    HAR +      ++++  + L+D YA  GL   + +VF  +       PN +   
Sbjct: 188 NHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLV 247

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
            ++  + + G     LL + +M  +  Y A+      +   + L+D   G+   A   + 
Sbjct: 248 AVVSAMGQMG-----LLAFGRMVYR--YVADGGVGRSVNLENALIDMF-GKFGCAASARE 299

Query: 161 GFDSF--DDV--GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
            FDS    DV     +V  Y KC G  E+      R F D+  R    W+ +I+   Q  
Sbjct: 300 VFDSMAVKDVYSWTTMVNAYAKC-GDLESAA----RLFDDMPRRNAVSWSCMIAAYSQAN 354

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN- 271
           + E++  LFK M  EG E  +  L+++L +  +L  L+LGR ++   V+S     L+VN 
Sbjct: 355 QPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAV-LTVNL 413

Query: 272 -TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             A + +Y+K    + A  LF +M++++ V WN MI A+   G  +E L L   +  +  
Sbjct: 414 GNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCI 473

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQ 355
             D  T +  +S+ S    +  G++
Sbjct: 474 VPDEITFLGLLSACSHSGLVSEGRR 498


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 302/510 (59%), Gaps = 10/510 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI-VHCVA 259
           WN++I     + + +     +  +R  G   D  T   LL++  +L++    +   H V 
Sbjct: 72  WNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVK 131

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
              DF  D  V  +L+S ++    ++ ++ LF + + KD V W  +I+   ++G   E+L
Sbjct: 132 FGLDF--DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEAL 189

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD-YQVSVHNSLIDM 378
           E  + M  SG   D  T ++ + + + ++++ +G+ +H   + +G   + V V ++L+DM
Sbjct: 190 ECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDM 249

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C   + A K+F+ + T+ +VSW ++I GYV  ++  EAL++F EM +EG+E +  T+
Sbjct: 250 YSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTV 309

Query: 439 INILPACVNIGALEHVKYLHGY--SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            + L AC  +G+L+  ++LH Y    KLGLNS   + TA+   Y+KCGC++ A  +F  E
Sbjct: 310 TSALTACAQLGSLDQGRWLHEYVDRSKLGLNS--KLGTALVDMYSKCGCVDEALLVF--E 365

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K+ +KD+  W +MI+  A  GD      L++QM +S V+P+ +TFLG+L+AC + GLV+E
Sbjct: 366 KLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDE 425

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G  +F+ M   Y  EP+ +HY  MV+LLGRAG ++EA + ++ MP +P   VWG L S C
Sbjct: 426 GLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGC 485

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
            +H   EL E     LI ++P ++G Y+LL+N+Y+   KW   A +R  ++ +G+ K+PG
Sbjct: 486 MIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPG 545

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           CSWIE+  ++HEF A D+SH ++  +Y +L
Sbjct: 546 CSWIEVNGVIHEFIAFDKSHTESINVYMML 575



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 211/412 (51%), Gaps = 6/412 (1%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C    HL+Q  +  I     H    LS  L  +  +LG   L   +F+ + +P   L+ T
Sbjct: 18  CGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLL---LFDRLATPYIFLWNT 74

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           I++  S   + +  L+ Y ++    + P   T+P ++++ S L +  +  + +A +VK G
Sbjct: 75  IIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIVKFG 133

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
            D    V ++LV  +  C     + +  I+   KD+ S W +LI+  ++NG++ ++ E F
Sbjct: 134 LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVS-WTALINGCLRNGRAVEALECF 192

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSK 280
             MR  G E D  T++++L +   L+ +  GR VH   V S     D+ V +AL+ MYSK
Sbjct: 193 VEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK 252

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
               +DA  +F++M  ++ V W  +I+ Y Q    KE+L++   M+  G   +  T  +A
Sbjct: 253 CGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSA 312

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +++ + + +++ G+ +H  V R+       +  +L+DMY +C  ++ A  +F+ +  K V
Sbjct: 313 LTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDV 372

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             W++MI G      +L +L LFS+M    V+ + VT + +L AC + G ++
Sbjct: 373 YPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVD 424



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 124/271 (45%), Gaps = 21/271 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +H  Y+    +  ++ + S L+D Y+  G    + +VFN + + N + +G ++    +
Sbjct: 224 RWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQ 283

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV--VKLGFDSFD 166
              Y++ L V+++M ++ + P + T    + +C+ L     G  +H  V   KLG +S  
Sbjct: 284 CNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS-- 341

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            +G ALV+ Y KC  G  +E  ++  K   KD+   W ++I+     G +  S  LF  M
Sbjct: 342 KLGTALVDMYSKC--GCVDEALLVFEKLPAKDVYP-WTAMINGLAMRGDALSSLNLFSQM 398

Query: 225 RMEGAEFDSGTLINLLRSTVEL----KSLELGRIVHCVAVVSDFCKDLSVN--TALLSMY 278
                + +  T + +L +        + LEL R++ C     D+  + +V+    ++ + 
Sbjct: 399 IRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC-----DYRLEPNVDHYGCMVDLL 453

Query: 279 SKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
            +   LE+A    + M  +    VW  + S 
Sbjct: 454 GRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 200/623 (32%), Positives = 327/623 (52%), Gaps = 45/623 (7%)

Query: 124 LQSMYPAE-DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
           +Q  +P +  T+  ++++C    D I+G+ +HA   K        + +     Y KC G 
Sbjct: 1   MQCTFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKC-GS 59

Query: 183 FENEKG---------------------------MIQRKFKDLKS----RWNSLISLAVQN 211
             N +                            + ++ F ++       +N+LI+     
Sbjct: 60  LHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADR 119

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+   +  LF  +R      D  TL  ++ +  +   + L R +HC  VV  +    SVN
Sbjct: 120 GECRPALRLFAEVRELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVN 177

Query: 272 TALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            A+L+ YS+   L +A+ +F +M +   +D V WN MI A  Q     E++EL   MVR 
Sbjct: 178 NAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRR 237

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED--LN 386
           G + D+FT  + +++ + +K++  G Q H  ++++G      V + LID+Y +C    + 
Sbjct: 238 GLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVE 297

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTH-DQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           C RK+F+ +    +V W++MI G+  + D S + +  F EM+  G   D  + + +  AC
Sbjct: 298 C-RKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSAC 356

Query: 446 VNIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
            N+ +    K +H  ++K  +  +  SVN A+   Y+KCG +  A  +FD   +   +++
Sbjct: 357 SNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFD--TMPEHNMV 414

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           + NSMI+ YA+HG   +  +L+  M Q D+ P+ ITF+ +L+ACV+ G VEEG+  F  M
Sbjct: 415 SLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMM 474

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           KE +  EP  EHY+ M++LLGRAG + EA  +++ MPF P +  W  LL AC+ H   EL
Sbjct: 475 KERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVEL 534

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           A   A + + +EP NA  YV+LSN+YA+A +W   A ++  +R+RG+KK PGCSWIEI K
Sbjct: 535 AVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDK 594

Query: 685 LVHEFWAADQSHPQADAIYTILG 707
            VH F A D SHP    I+  +G
Sbjct: 595 KVHVFVAEDTSHPMIKEIHVYMG 617



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 256/516 (49%), Gaps = 20/516 (3%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           + N+   + LI++YA   L+ L++QVF+ I  P+ + Y T++   +  GE    L ++ +
Sbjct: 72  YPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAE 131

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           +          T   VI +C   +  +   ++H  VV  G+D +  V +A++  Y +   
Sbjct: 132 VRELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLACYSR--K 187

Query: 182 GFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           GF NE   + R+  +   R    WN++I    Q+ +  ++ ELF+ M   G + D  T+ 
Sbjct: 188 GFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMA 247

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA-SLEDAKMLFDKMSD 296
           ++L +   +K L  G   H + + S F  +  V + L+ +YSK A  + + + +F++++ 
Sbjct: 248 SVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 297 KDRVVWNIMISAYYQ-SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            D V+WN MIS + Q     ++ +     M  +GF  D  + +   S+ S + +   GKQ
Sbjct: 308 PDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQ 367

Query: 356 MHANVLRNGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           +HA  +++   Y +VSV+N+L+ MY +C +++ AR++FD++    +VS +SMI GY  H 
Sbjct: 368 VHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHG 427

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVN 473
             +E+LRLF  M  + +  + +T I +L ACV+ G +E   KY +    +  +   +   
Sbjct: 428 VEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHY 487

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL---YTQMK 530
           + +     + G ++ A  + +    +    I W +++ A  KHG+     K    + Q++
Sbjct: 488 SCMIDLLGRAGKLKEAERIIETMPFNPGS-IEWATLLGACRKHGNVELAVKAANEFLQLE 546

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
             +  P    ++ L     +A   EE   + + M+E
Sbjct: 547 PYNAAP----YVMLSNMYASAARWEEAATVKRLMRE 578



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 189/391 (48%), Gaps = 11/391 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT---SPNSLLYGTILK 104
           ++Q+H  ++++ G      +++ ++  Y+  G L+ +++VF  +      + + +  ++ 
Sbjct: 158 VRQLHC-FVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIV 216

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
              +  E  + + ++++M  + +     T   V+ + +C+ D + G + H  ++K GF  
Sbjct: 217 ACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHG 276

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ-NGKSEKSFELFKL 223
              VG  L++ Y KC GG    + + +         WN++IS   Q    SE     F+ 
Sbjct: 277 NSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFRE 336

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLA 282
           M+  G   D  + + +  +   L S  +G+ VH +A+ SD   + +SVN AL++MYSK  
Sbjct: 337 MQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCG 396

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           ++ DA+ +FD M + + V  N MI+ Y Q G   ESL L   M++     +  T IA +S
Sbjct: 397 NVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLS 456

Query: 343 SISTMKNIEWGKQMHANVL--RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKT 399
           +      +E G Q + N++  R   + +   ++ +ID+      L  A +I +++     
Sbjct: 457 ACVHTGKVEEG-QKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPG 515

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSE-MKLE 429
            + W++++     H     A++  +E ++LE
Sbjct: 516 SIEWATLLGACRKHGNVELAVKAANEFLQLE 546


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 302/541 (55%), Gaps = 11/541 (2%)

Query: 168 VGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
           V  ALV  Y KC    +  K   GM  R        WNS+IS    + +S ++F +F+ M
Sbjct: 47  VNTALVNTYTKCGSLTDARKVFDGMPCRSV----GTWNSMISAYSISERSGEAFFIFQRM 102

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           + EG   D  T +++L + V  ++L+ G+ V      + F  DL V TAL++MY++  S 
Sbjct: 103 QHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSP 162

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           E+A  +F +M  K+ + W+ +I+A+   G   E+L     M + G   +  T I+ ++  
Sbjct: 163 ENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 222

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE--DLNCARKIFDSVKTKTVVS 402
           +T   +E   ++H  +  +G D   ++ N+L+++Y  CE  +L+ A  I   +  + + +
Sbjct: 223 TTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITA 282

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+ +I GY  H +S EAL  +  ++LE + VD VT I++L AC +  +L   K +H  ++
Sbjct: 283 WNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 342

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           + GL+S   V  A+   Y+KCG +E A  +FD   I S   ++WN M+ AYA+HG+  + 
Sbjct: 343 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSA--VSWNGMLQAYAQHGESEEV 400

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            KL  +M+Q  V+ + ITF+ +L++C +AGL+ EG   F  +    G E   EHY  +V+
Sbjct: 401 LKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVD 460

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG + EA + +  MP +P+   W  LL AC++H + +  +L A KL+ ++P N+  
Sbjct: 461 LLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSA 520

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            V+LSNIY+  G W   AK+R  +  R +KK PG S I++   VHEF   D SHP+A  I
Sbjct: 521 SVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEI 580

Query: 703 Y 703
           Y
Sbjct: 581 Y 581



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 203/402 (50%), Gaps = 6/402 (1%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M +EG + +  T +N+L S V+  +L  G+ +H     S+   D+ VNTAL++ Y+K  S
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L DA+ +FD M  +    WN MISAY  S    E+  +   M   G R D  T ++ + +
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
               +N++ GK +  ++     +  + V  +LI MY  C     A ++F  +K K +++W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           S++I  +  H    EALR F  M+ EG+  + VT I++L        LE +  +H    +
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE 240

Query: 464 LGLNSLSSVNTAIFISYAKC--GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
            GL+  ++++ A+   Y +C  G +++A  +  E  +D + I  WN +I+ Y  HG   +
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQE--MDEQQITAWNVLINGYTLHGRSRE 298

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             + Y +++   +  D +TF+ +L AC ++  + EG++I     E  G +       ++ 
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC-GLDSDVIVKNALT 357

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           N+  + G M+ AR +   MP +  A  W  +L A   H E+E
Sbjct: 358 NMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESE 398



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 181/383 (47%), Gaps = 5/383 (1%)

Query: 36  FSLLNLCENPQHLQQ-IHARYIILH-GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            S+L+ C NP++LQ   H R  I       +L + + LI  YA       + QVF  +  
Sbjct: 115 LSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQ 174

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  I+   +  G   + L  ++ M  + + P   T+  ++   +         +I
Sbjct: 175 KNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRI 234

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGG-FENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           H  + + G D    + +ALV  Y +C+ G  +  + ++Q   +   + WN LI+    +G
Sbjct: 235 HLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHG 294

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           +S ++ E ++ +++E    D  T I++L +     SL  G+++H  AV      D+ V  
Sbjct: 295 RSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKN 354

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL +MYSK  S+E+A+ +FD M  +  V WN M+ AY Q G  +E L+L+  M + G + 
Sbjct: 355 ALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKL 414

Query: 333 DLFTAIAAVSSISTMKNIEWGKQ-MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
           +  T ++ +SS S    I  G Q  H+     G + +   +  L+D+      L  A K 
Sbjct: 415 NGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKY 474

Query: 392 FDSVKTKT-VVSWSSMIKGYVTH 413
              + ++  +V+W+S++     H
Sbjct: 475 ISKMPSEPEIVTWASLLGACRVH 497


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 183/539 (33%), Positives = 301/539 (55%), Gaps = 35/539 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG-TLINLLRSTVELKSLELGRIVHCVA 259
           WN+LI     +    +SF +F  +  +  +  +  T   ++++  ELK+  +G  VH +A
Sbjct: 93  WNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMA 152

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +   F  DL +  +L+  Y     L  A+ LF  +S KD V WN MISA+ Q   P+++L
Sbjct: 153 IKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDAL 212

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           EL + M R     +  T +  +S+ +   ++E+G+ + + + R G    +++ N+++DMY
Sbjct: 213 ELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMY 272

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYV---------------------------- 411
            +C  ++ A+K+FD +  + V SW+ M+ GY                             
Sbjct: 273 TKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332

Query: 412 ---THDQSLEALRLFSEMKLEGV-EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
               + +  EAL +F+E++L  + + D VT+++ L AC  +GA++   ++H Y  + G+ 
Sbjct: 333 AYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIV 392

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               + +++   YAKCG +E A E+F    ++ +D+  W++MI+    HG       L+ 
Sbjct: 393 LNCHLISSLVDMYAKCGSLEKALEVF--YSVEERDVYVWSAMIAGLGMHGRGKAAIDLFF 450

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M+++ V+P+ +TF  +L AC +AGLV+EGR+ F EM+  YG  P  +HYA MV++LGRA
Sbjct: 451 EMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRA 510

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++EA EL+ +M   P A VWG LL AC +H   EL EL +++L+ +EP N G  VLLS
Sbjct: 511 GFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLS 570

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           NIYA  G+W  V+++R  +RD  LKK PGCS IE    VHEF   D +HP +  IY+ L
Sbjct: 571 NIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKL 629



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 247/521 (47%), Gaps = 47/521 (9%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA--NLGLLSLSQQVFNSITS 93
            S ++ C + + L+++HAR ++  GL  +   +S L  + A  +   L  ++ +F+ I  
Sbjct: 29  LSTIDKCSSSKQLKEVHAR-MLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCLLDFISGEK 152
           PN   + T+++  +   +  ++ +++  +  +    P + T+PFVI++ S L     G  
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTA 147

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           +H   +KL F     + ++LV FY  C      +  M +R FK +  +    WNS+IS  
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGAC-----GDLSMAERLFKGISCKDVVSWNSMISAF 202

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            Q    E + ELF  M  E    +S T++ +L +  +   LE GR V           DL
Sbjct: 203 AQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDL 262

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKD--------------------RVV------- 301
           ++  A+L MY+K  S++DA+ LFD+M ++D                    R+V       
Sbjct: 263 TLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVK 322

Query: 302 ----WNIMISAYYQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMKNIEWGKQM 356
               WN++ISAY Q+G PKE+L +   +  S   + D  T ++ +S+ + +  I+ G  +
Sbjct: 323 EIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWI 382

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H  + R G      + +SL+DMY +C  L  A ++F SV+ + V  WS+MI G   H + 
Sbjct: 383 HVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRG 442

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTA 475
             A+ LF EM+   V+ + VT  N+L AC + G ++  + + H      G+         
Sbjct: 443 KAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYAC 502

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +     + G +E A EL +E    +     W +++ A + H
Sbjct: 503 MVDILGRAGFLEEAMELINEMST-TPSASVWGALLGACSLH 542



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 196/425 (46%), Gaps = 37/425 (8%)

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADL 334
           S  S  ++L+ A+ LFD++   +   WN +I AY  S  P +S  + + ++ +     + 
Sbjct: 67  SALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNK 126

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT    + + S +K    G  +H   ++      + + NSL+  Y  C DL+ A ++F  
Sbjct: 127 FTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKG 186

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           +  K VVSW+SMI  +   +   +AL LF +M+ E V  + VT++ +L AC     LE  
Sbjct: 187 ISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG 246

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE------------------- 495
           +++  Y  + G+    ++  A+   Y KCG ++ A +LFDE                   
Sbjct: 247 RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKM 306

Query: 496 ----------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPDLITFLGL 544
                       +  K+I  WN +ISAY ++G   +   ++ +++ S + +PD +T +  
Sbjct: 307 GDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVST 366

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC   G ++ G  I   +K   G   +    +S+V++  + G +++A E+   +  + 
Sbjct: 367 LSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER- 424

Query: 605 DARVWGPLLSACKMHSETELA-ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           D  VW  +++   MH   + A +L  E     E +   N V  +N+  A      V + R
Sbjct: 425 DVYVWSAMIAGLGMHGRGKAAIDLFFEM---QEAKVKPNSVTFTNVLCACSHAGLVDEGR 481

Query: 664 TFLRD 668
            F  +
Sbjct: 482 VFFHE 486


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  338 bits (866), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 214/727 (29%), Positives = 383/727 (52%), Gaps = 49/727 (6%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           T    + LL+L      ++ I A +  +  L +++ L++ LI +Y  LG++  + +VF  
Sbjct: 71  TVNDHYYLLDLSVRYDDVELIKAVHASIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVG 130

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           ++ PN + Y  ++   +K     + + ++ +M    +   E ++  ++  C  LLD   G
Sbjct: 131 LSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELG 190

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
            ++HA V+K+GF ++  V +AL+  Y KC  G+ +    + + F ++  R    WN++IS
Sbjct: 191 CQLHAIVIKMGFLNYTFVSNALMGLYGKC--GYLDS---VLQLFDEMPHRDIASWNTVIS 245

Query: 207 LAVQNGKSEKSFELFKLMR-MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
             V+    E++FELF+ MR ++G   D  TL  +L +   L S+ +GR +H   +   F 
Sbjct: 246 SVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFE 304

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL--- 322
            ++SV  AL+  Y+K  S++    LF+KM  +D + W  MI+AY + G    +LE+    
Sbjct: 305 SNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKM 364

Query: 323 ---------------------------MC-MVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
                                       C MV  G     FT    +++   +   +  K
Sbjct: 365 PARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISK 424

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV--VSWSSMIKGYVT 412
           Q+H  +L+ G      +  +L+DM   C  +  A+K+F          + W+SMI GY  
Sbjct: 425 QIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYAR 484

Query: 413 HDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
           + Q  EA+ LF + +LEG + VD V    +L  C  +   E  K +H +++K G  S   
Sbjct: 485 NAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLG 544

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  +I   Y+KC  ++ A ++F+   + + DI++WN +I+ +  H    +   ++++M++
Sbjct: 545 VGNSIITMYSKCSNMDDAIKVFN--VMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEK 602

Query: 532 SDVRPDLITFLGLLTAC--VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           + ++PD +TF+ +++A    N+ LV+  R +F  MK  Y  +P+ EHY S+V +LG  G 
Sbjct: 603 AGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGL 662

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           ++EA E++  MP +P+A VW  LL AC++HS T + +  A+ L++M+P +   Y+L+SN+
Sbjct: 663 LEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNL 722

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           Y+A G+W+    +R  +R +G +K PG SWI     VH F+A D+SHPQA  I++ L +L
Sbjct: 723 YSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELL 782

Query: 710 ELEIMEG 716
            +E ++ 
Sbjct: 783 IMECLKA 789


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 216/688 (31%), Positives = 370/688 (53%), Gaps = 23/688 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH  + I+H      I+S++L++ Y   G    +  +F ++T P+ + + T+L      
Sbjct: 85  QIHG-FSIIHEFVNVTIVSNSLMNMYCKSGQFCKALCIFENLTHPDIVSWNTVLSGCQT- 142

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD--FISGEKIHAQVVKLGFDSFDD 167
              E       +M    +     TY  V+  C   ++  F+ G ++H+ +VK GFD    
Sbjct: 143 --SEDAFSFACKMNSSGVVFDAVTYTTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVF 200

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG-KSEKSFELFKLMRM 226
           VG+AL+  Y +     E  +   + K +DL S WN++IS   Q G    ++  +F  M  
Sbjct: 201 VGNALISMYSRWGHLVEARRVFEEMKTRDLVS-WNAMISGYSQEGIYGLEAISMFLQMFR 259

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G E D  +  + + +    K+LEL R +H +++ +   K ++V+  L+S Y K   +ED
Sbjct: 260 GGMELDRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIED 319

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+++F  M++++ V W  MIS         E++     M   G   +  T +  + +I+ 
Sbjct: 320 ARLVFQNMNERNVVSWTTMISID-----EAEAVSFFNEMRLDGVYPNDVTFVGLIHAITI 374

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            + +  GK +H    + G   + +V NS+I MY + + +  + K+F  +K + +++W+++
Sbjct: 375 GELVVQGKMVHGFCTKTGFSSKSNVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAWNAL 434

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           I G+V +    EA+R F    +E    +  F +I+N + A  ++ +L++ +  H   +KL
Sbjct: 435 ISGFVHNGLCQEAIRAFFSGLIESKPNQYSFGSILNAIGAAEDV-SLKYGQRCHSQIIKL 493

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           GLN+   V++A+   YAK G I  + ++F E    S+    W ++ISAYA+HGD+     
Sbjct: 494 GLNTDPIVSSALLDMYAKRGSICESQKVFVETPQQSQ--FAWTTIISAYARHGDYESVMN 551

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
            + +M++ +VRPD ITFL +LTAC   G+V+ G  +F  M + Y  EPS EHY+ +V++L
Sbjct: 552 WFEEMRRLEVRPDSITFLSILTACGRRGMVDMGCHLFGSMVKDYQIEPSAEHYSCLVDML 611

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAG ++EA  L+  +P  P   V   LL AC++H   ++ E  A+ L+ MEP  +G+YV
Sbjct: 612 GRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALMEMEPTESGSYV 671

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL-----VHEFWAADQSHPQA 699
           L+SN+YA  GKW  VAK+R  +R +G+KK  G SW+++G +     +H F + D SHPQ+
Sbjct: 672 LMSNLYAEIGKWEMVAKVRKRMRVKGVKKEVGFSWVDVGGIDSSLSLHGFSSGDTSHPQS 731

Query: 700 DAIYTILGILELEIMEGRRESSEELKFS 727
           +AI  +   L  E+   R E  E  K S
Sbjct: 732 EAICRMAECLGFEMKFLREEEIECQKHS 759



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 187/368 (50%), Gaps = 15/368 (4%)

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LG  +H  +++ +F     V+ +L++MY K      A  +F+ ++  D V WN ++S   
Sbjct: 82  LGSQIHGFSIIHEFVNVTIVSNSLMNMYCKSGQFCKALCIFENLTHPDIVSWNTVLSGCQ 141

Query: 311 QSGFPKESLELLMCMVRSG--FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
            S   +++      M  SG  F A  +T + +            G Q+H+ +++ G D +
Sbjct: 142 TS---EDAFSFACKMNSSGVVFDAVTYTTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCE 198

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD-QSLEALRLFSEMK 427
           V V N+LI MY     L  AR++F+ +KT+ +VSW++MI GY       LEA+ +F +M 
Sbjct: 199 VFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMF 258

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
             G+E+D ++  + + AC     LE  + +HG S+K       +V+  +  +Y KC  IE
Sbjct: 259 RGGMELDRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIE 318

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  +F  + ++ +++++W +MIS      D ++    + +M+   V P+ +TF+GL+ A
Sbjct: 319 DARLVF--QNMNERNVVSWTTMISI-----DEAEAVSFFNEMRLDGVYPNDVTFVGLIHA 371

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
                LV +G+++     ++ G+        S++ +  +   M ++ ++ +++ ++ D  
Sbjct: 372 ITIGELVVQGKMVHGFCTKT-GFSSKSNVCNSIITMYAKFKSMQDSVKVFQELKYQ-DII 429

Query: 608 VWGPLLSA 615
            W  L+S 
Sbjct: 430 AWNALISG 437


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/653 (30%), Positives = 346/653 (52%), Gaps = 18/653 (2%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           YA+      ++  F+++   N   +  ++   +  G+ ++TL   ++M    + P   T+
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-- 192
              + SC        G +IH  VV    +    V +AL+  Y KC G   + K +  +  
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKC-GSLSHAKRVFAKME 120

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + +++ S W+ +      +G   ++   F+ M + G +     ++ +L +      ++ G
Sbjct: 121 RTRNVIS-WSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYY 310
           R++H    +S F  +L V  A+++MY +  ++E+A+ +FD M +  +D V WNIM+S Y 
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
            +   K++++L     R   R D  T ++ +S+ S+ +++  G+ +H  ++ +  +  V 
Sbjct: 240 HNDRGKDAIQLYQ---RMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVI 296

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLE 429
           V N+L+ MY +C     AR +FD ++ ++++SW+++I  YV      EA  LF +M +LE
Sbjct: 297 VGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELE 356

Query: 430 G------VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
                  V+ D +  + IL AC ++ ALE  K +   +   GL+S  +V TA+   Y KC
Sbjct: 357 KNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKC 416

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G IE A  +FD       D+  WN+MI+ YA+ G   +  KL+ +M+   VRPD  +F+ 
Sbjct: 417 GEIEEARRIFDA-VCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVS 475

Query: 544 LLTACVNAGLVEEGRIIFKEMKESY-GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
           +L AC + GL ++G+  F  M   Y     + +H+  + +LLGR G + EA E ++ +P 
Sbjct: 476 ILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPV 535

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
           KPDA  W  LL+AC+ H + + A+  A KL+ +EP  A  YV LSNIYA   KW+ VAK+
Sbjct: 536 KPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKV 595

Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           R F+ ++G+KK  G S IEIGK +H+F   D +HP+   I   L  L  ++ E
Sbjct: 596 RKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKE 648



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 174/340 (51%), Gaps = 6/340 (1%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY+   S  DAK  FD +  ++   W  +++A+  SG  KE+L  L  M + G R D  T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV- 395
            I A+ S    +++  G ++H  V+ +  +    V N+L++MY +C  L+ A+++F  + 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           +T+ V+SWS M   +  H    EALR F  M L G++     ++ IL AC +   ++  +
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H      G  S   V  A+   Y +CG +E A ++FD      +D+++WN M+S Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +       +LY +M+   +RPD +T++ LL+AC +A  V  GR++ K++      E +  
Sbjct: 241 NDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE-LEKNVI 296

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              ++V++  + G   EAR +   M  +     W  ++SA
Sbjct: 297 VGNALVSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISA 335



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 21/230 (9%)

Query: 25  QTRPHMTATHSFSLLNLCENPQH--LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLS 82
           Q RP        SLL+ C + +   L ++  + I+   L +N+I+ + L+  YA  G  +
Sbjct: 255 QLRPDKVTY--VSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHT 312

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM-------ALQSMYPAEDTYP 135
            ++ VF+ +   + + + TI+    +     +   +++QM       + Q + P    + 
Sbjct: 313 EARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFV 372

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
            ++ +C+ +     G+ +  Q    G  S   VG A+V  Y KC G  E  +    R F 
Sbjct: 373 TILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKC-GEIEEAR----RIFD 427

Query: 196 DLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
            + SR     WN++I++  Q G+S ++ +LF  M MEG   DS + +++L
Sbjct: 428 AVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSIL 477


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/673 (28%), Positives = 347/673 (51%), Gaps = 19/673 (2%)

Query: 18  FLRFP-ANQTRPHMTATHSF---SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSN 70
           F  FP A    P     + F   S L  C   +     +Q+H     L GL  N+ + + 
Sbjct: 119 FAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKL-GLDANVFVGTA 177

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           L++ YA  G +  +  VF+++ + N + +  ++   S+ G+    L ++ +M L  + P 
Sbjct: 178 LVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPD 237

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
                    +CS L     G +IH    +   +S   V +AL++ Y KC     +   + 
Sbjct: 238 RFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKC-----SRLLLA 292

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           +R F  +++R    W ++I+  +QN    ++  +F  +   G + D     ++L S   L
Sbjct: 293 RRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSL 352

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            ++  GR VH   + +D   D  V  AL+ MY+K   L +A+ +F+ +++ D + +N MI
Sbjct: 353 AAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 412

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
             Y + G    ++E+   M     +  L T ++ +   S+  ++E  KQ+H  ++++G+ 
Sbjct: 413 EGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTS 472

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             +   ++LID+Y +   ++ A+ +F  ++ + +V W++MI G   +++  EA++LF+ +
Sbjct: 473 LDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARL 532

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           ++ G+  +  T + ++     + ++ H +  H   +K G +S   ++ A+   YAKCG I
Sbjct: 533 RVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFI 592

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           E    LF  E    KD+I WNSMIS YA+HG   +   ++  M+ + V P+ +TF+ +L+
Sbjct: 593 EEGRLLF--ESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLS 650

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC +AGLV+EG   F  MK  Y  EP  EHYAS+VNL GR+G +  A+E ++ MP +P A
Sbjct: 651 ACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVA 710

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +W  LLSAC +    E+     E  +  +P ++G  VL+SNIYA+ G W    K+R  +
Sbjct: 711 TIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGM 770

Query: 667 RDRGLKKTPGCSW 679
              G+ K PG SW
Sbjct: 771 DCAGVVKEPGYSW 783



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 196/368 (53%), Gaps = 12/368 (3%)

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT------LI 237
           G  +R F  + SR    W S IS+  Q+G+ + +  LF      GA    G       L 
Sbjct: 82  GDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLA 141

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           + LR+  + ++   G  VH VA       ++ V TAL+++Y+K   ++ A  +FD +  +
Sbjct: 142 SALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPAR 201

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           + V W  +I+ Y Q+G    +LEL   M   G R D F   +A S+ S +  +E G+Q+H
Sbjct: 202 NPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIH 261

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
               R  ++   SV N+LID+YC+C  L  AR++FDS++ + +VSW++MI GY+ +    
Sbjct: 262 GYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDT 321

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EA+ +F ++   G + D     +IL +C ++ A+   + +H + +K  L S   V  A+ 
Sbjct: 322 EAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALI 381

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAKC  +  A  +F  E +   D I++N+MI  YA+ GD +   +++ +M+   ++P 
Sbjct: 382 DMYAKCEHLTEARAVF--EALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPS 439

Query: 538 LITFLGLL 545
           L+TF+ LL
Sbjct: 440 LLTFVSLL 447


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 304/580 (52%), Gaps = 80/580 (13%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           N++IS   +   +  +  +F+ +   G+   D  +   LL +   L ++    + HC  +
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNIS---VRHCAQL 181

Query: 261 VSDFCKD-----LSVNTALLSMYSKLASLE---DAKMLFDKMSDKDR------------- 299
                K      LSV+ AL+++Y K  +LE   DA+ + D+M DKD              
Sbjct: 182 QCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRR 241

Query: 300 ------------------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
                             VVWN MIS Y  SG   E+ EL   MV      D FT  + +
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           S+ +       GK +H  + R   ++     + V+N+L+ +Y +C ++  AR+IFD++K+
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKS 361

Query: 398 KTVVSWSSMIKGYVTH---DQSLE----------------------------ALRLFSEM 426
           K VVSW++++ GYV     D+++E                            AL+LF+ M
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM 421

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           + E V+    T    + AC  +G+L+H K LHG+ ++LG    +S   A+   YA+CG +
Sbjct: 422 RAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAV 481

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           + A  +F    + + D ++WN+MISA  +HG   +  +L+ +M    + PD I+FL +LT
Sbjct: 482 KEANLMF--LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC ++GLV+EG   F+ MK  +G  P ++HY  +++LLGRAG + EAR+L+K MPF+P  
Sbjct: 540 ACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            +W  +LS C+   + EL    A++L  M P++ G Y+LLSN Y+AAG+W   A++R  +
Sbjct: 600 SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLM 659

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           RDRG+KK PGCSWIE G  VH F   D  HP+A  +Y  L
Sbjct: 660 RDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFL 699



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 194/424 (45%), Gaps = 78/424 (18%)

Query: 272 TALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           T+L++ Y+    L  A   FD +  + +D V+ N +ISAY ++     ++ +   ++ SG
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 330 -FRADLFTAIAAVSSISTMKNI--EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE--- 383
             R D ++  A +S+   + NI      Q+  +VL++G+   +SV N+L+ +Y +CE   
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 384 -------------------------------DLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
                                          D+  AR +F+ V  K  V W++MI GYV 
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS-- 470
               +EA  LF  M LE V +D  T  ++L AC N G   H K +HG   +L  N +   
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEA 331

Query: 471 --SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK------------- 515
              VN A+   Y+KCG I +A  +FD  K  SKD+++WN+++S Y +             
Sbjct: 332 ALPVNNALVTLYSKCGNIAVARRIFDNMK--SKDVVSWNTILSGYVESSCLDKAVEVFEE 389

Query: 516 -----------------HGDWSQ-CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
                            HG +S+   KL+ +M+  DV+P   T+ G ++AC   G ++ G
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHG 449

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           + +   + +  G+E S     +++ +  R G + EA  +   MP   D+  W  ++SA  
Sbjct: 450 KQLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALG 507

Query: 618 MHSE 621
            H  
Sbjct: 508 QHGH 511



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/546 (23%), Positives = 230/546 (42%), Gaps = 86/546 (15%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQM- 122
           + +++L+ +YA  G L  +   F+++     +++L+  ++   ++       + V++ + 
Sbjct: 89  VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 123 ALQSMYPAEDTYPFV-IRSCSCLLDFISGE---KIHAQVVKLGFDSFDDVGDALVEFYIK 178
           A  S+ P  D Y F  + S +  L  IS     ++   V+K G      V +ALV  Y+K
Sbjct: 149 ASGSLRP--DDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMK 206

Query: 179 CDG---------------------------GF--ENEKGMIQRKFKDLKSR----WNSLI 205
           C+                            G+    + G  +  F+++  +    WN++I
Sbjct: 207 CEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMI 266

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSD 263
           S  V +G   ++FELF+ M +E    D  T  ++L +         G+ VH     +  +
Sbjct: 267 SGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPN 326

Query: 264 FCKD--LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN------------------ 303
           F  +  L VN AL+++YSK  ++  A+ +FD M  KD V WN                  
Sbjct: 327 FVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 304 -------------IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
                        +M+S Y   GF +++L+L   M     +   +T   A+S+   + ++
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSL 446

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           + GKQ+H ++++ G +   S  N+LI MY  C  +  A  +F  +     VSW++MI   
Sbjct: 447 KHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISAL 506

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSL 469
             H    EAL LF  M  EG+  D ++ + +L AC + G + E  +Y        G+   
Sbjct: 507 GQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPG 566

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW-------SQC 522
               T +     + G I  A +L      +    I W +++S     GD         Q 
Sbjct: 567 EDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI-WEAILSGCRTSGDMELGAHAADQL 625

Query: 523 FKLYTQ 528
           FK+  Q
Sbjct: 626 FKMTPQ 631



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 3/189 (1%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR I  +   ++++  + ++  Y     L  + +VF  +   N L +  ++      G  
Sbjct: 352 ARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFS 411

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           E  L ++ +M  + + P + TY   I +C  L     G+++H  +V+LGF+  +  G+AL
Sbjct: 412 EDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNAL 471

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           +  Y +C  G   E  ++     ++ S  WN++IS   Q+G   ++ ELF  M  EG   
Sbjct: 472 ITMYARC--GAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYP 529

Query: 232 DSGTLINLL 240
           D  + + +L
Sbjct: 530 DRISFLTVL 538


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 214/727 (29%), Positives = 383/727 (52%), Gaps = 49/727 (6%)

Query: 31  TATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           T    + LL+L      ++ I A +  +  L +++ L++ LI +Y  LG++  + +VF  
Sbjct: 89  TVNDHYYLLDLSVRYDDVELIKAVHASIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVG 148

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           ++ PN + Y  ++   +K     + + ++ +M    +   E ++  ++  C  LLD   G
Sbjct: 149 LSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELG 208

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
            ++HA V+K+GF ++  V +AL+  Y KC  G+ +    + + F ++  R    WN++IS
Sbjct: 209 CQLHAIVIKMGFLNYTFVSNALMGLYGKC--GYLDS---VLQLFDEMPHRDIASWNTVIS 263

Query: 207 LAVQNGKSEKSFELFKLMR-MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
             V+    E++FELF+ MR ++G   D  TL  +L +   L S+ +GR +H   +   F 
Sbjct: 264 SVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASM-VGREIHAHVIKIGFE 322

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL--- 322
            ++SV  AL+  Y+K  S++    LF+KM  +D + W  MI+AY + G    +LE+    
Sbjct: 323 SNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKM 382

Query: 323 ---------------------------MC-MVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
                                       C MV  G     FT    +++   +   +  K
Sbjct: 383 PARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISK 442

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV--VSWSSMIKGYVT 412
           Q+H  +L+ G      +  +L+DM   C  +  A+K+F          + W+SMI GY  
Sbjct: 443 QIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYAR 502

Query: 413 HDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
           + Q  EA+ LF + +LEG + VD V    +L  C  +   E  K +H +++K G  S   
Sbjct: 503 NAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLG 562

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  +I   Y+KC  ++ A ++F+   + + DI++WN +I+ +  H    +   ++++M++
Sbjct: 563 VGNSIITMYSKCSNMDDAIKVFN--VMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEK 620

Query: 532 SDVRPDLITFLGLLTAC--VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           + ++PD +TF+ +++A    N+ LV+  R +F  MK  Y  +P+ EHY S+V +LG  G 
Sbjct: 621 AGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGL 680

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           ++EA E++  MP +P+A VW  LL AC++HS T + +  A+ L++M+P +   Y+L+SN+
Sbjct: 681 LEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNL 740

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           Y+A G+W+    +R  +R +G +K PG SWI     VH F+A D+SHPQA  I++ L +L
Sbjct: 741 YSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELL 800

Query: 710 ELEIMEG 716
            +E ++ 
Sbjct: 801 IMECLKA 807


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 205/681 (30%), Positives = 363/681 (53%), Gaps = 17/681 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q   AR +     ++N    + ++  Y     L  ++++F S+ S N + +  ++   S+
Sbjct: 61  QIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQ 120

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             + ++   +Y +M    + P   T+  ++             +IH+ +++ GF +   V
Sbjct: 121 NNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIV 180

Query: 169 GDALVEFYIK--CDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            ++LV+ Y K  C         +  + F ++ ++    +N +I+   + G  E++ +LF 
Sbjct: 181 FNSLVDSYCKTCC-------LDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFM 233

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            MR    +    T   +L  +V  + +  G+ +H +A+ + +  D+ V  ALL  YSK  
Sbjct: 234 QMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHD 293

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            ++ AK LFD+M + D V +NI+I+ Y  +G  ++S +L   +  + F    F     +S
Sbjct: 294 YIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLS 353

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
             +   N+  G+Q HA  +   +  +V V N+L+DMY +CE    A +IF ++  +  V 
Sbjct: 354 VAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVP 413

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+++I  YV      EAL++F EM  E V  D  T  + L A  N+ ++   K LH   +
Sbjct: 414 WTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVI 473

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           +LGL S     + +   YA CG ++ A E+F E  +  ++I+ WN++ISAY+++GD    
Sbjct: 474 RLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKE--MPDRNIVCWNALISAYSQNGDAEAT 531

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           F  +  M +S + PD ++FL +LTAC + GLVE+    F  M + Y  +P ++HYA+M++
Sbjct: 532 FSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMID 591

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP-ENAG 641
           +L R+G  +EA  L+ +MPF+PD  +W  +L++C++H   +LA+  A++L  M+   +A 
Sbjct: 592 VLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAA 651

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            YV +SNIYA AGKW   AK++  +R+RG+KK    SW+EI   VH F A D++HPQ + 
Sbjct: 652 AYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQ 711

Query: 702 I-YTILGILELEIMEGRRESS 721
           I   I  ++EL   EG +  +
Sbjct: 712 IRRKINSLVELMDKEGYKPDT 732


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/483 (37%), Positives = 297/483 (61%), Gaps = 8/483 (1%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ S     SL  G  +H   +     +D  + T L++MYS+L S+++A+ +FDK   + 
Sbjct: 84  LILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRT 143

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI----AAVSSISTMKNIEWGK 354
             VWN +  A   +G+ +E L+L   M R G  +D FT      A V+S + +  +  G+
Sbjct: 144 IYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGR 203

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++H ++LR+G +  V +  +L+DMY     +  A ++FD +  K VVSWS+MI  Y  + 
Sbjct: 204 EIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNG 263

Query: 415 QSLEALRLFSEMKLEGVEV--DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           + LEAL LF +M LE  ++  + VT++++L AC  + ALE  K +HGY ++ GL+S+  V
Sbjct: 264 KPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPV 323

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   YA+CG +E+   +F  E+++ +D+++WNS+IS+Y  HG   +  +++ +M   
Sbjct: 324 VSALVTVYARCGNLELGHRVF--ERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQ 381

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            + P  I+F+ +L AC +AGLVEEG+++F+ M   +   PS EHYA MV+LLGRA  +DE
Sbjct: 382 GLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDE 441

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A +++ DM  +P  +VWG LL +C++H   ELAE    +L  +EP NAGNYVLL++IYA 
Sbjct: 442 AAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAE 501

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           A  WN V +++  L  RGL+K PG S IEI + ++ F + D+ +PQ + ++ +L  L +E
Sbjct: 502 AKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSME 561

Query: 713 IME 715
           + E
Sbjct: 562 MKE 564



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 201/423 (47%), Gaps = 15/423 (3%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++++L K G   + L    Q+  Q   P + TY  +I SC+       G  +H  ++  G
Sbjct: 53  LIQSLCKQGNLNQAL----QVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDG 108

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
            D    +   L+  Y + D   +N + +  +  K     WN+L       G   +  +L+
Sbjct: 109 SDQDPFLATKLINMYSELD-SIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLY 167

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKS----LELGRIVHCVAVVSDFCKDLSVNTALLSM 277
           + M   G   D  T   +L++ V  ++    L  GR +H   +   F   + + T LL M
Sbjct: 168 RRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDM 227

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL--MCMVRSGFRADLF 335
           Y++   + +A  +FD+M  K+ V W+ MI+ Y ++G P E+LEL   M +       +  
Sbjct: 228 YARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSV 287

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T ++ + + + +  +E GK MH  +LR G D  + V ++L+ +Y  C +L    ++F+ +
Sbjct: 288 TMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERM 347

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + + VVSW+S+I  Y  H    +A+++F EM  +G+    ++ +++L AC + G +E  K
Sbjct: 348 EKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGK 407

Query: 456 YLHGYSMKLGLNSLSSVN--TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            L   SM  G     SV     +     +   ++ A ++ D+ +I+    + W S++ + 
Sbjct: 408 VLF-ESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKV-WGSLLGSC 465

Query: 514 AKH 516
             H
Sbjct: 466 RIH 468



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 198/392 (50%), Gaps = 14/392 (3%)

Query: 34  HSFSLLNL-CENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           H++ LL L C     L Q   +H R++I  G  Q+  L++ LI+ Y+ L  +  +++VF+
Sbjct: 79  HTYELLILSCTRQNSLPQGIDLH-RHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFD 137

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
                   ++  + + L+  G   + L +Y++M    +     TY +V+++C     F+S
Sbjct: 138 KTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVS 197

Query: 150 ----GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
               G +IH  +++ GF+    +   L++ Y +        +   Q   K++ S W+++I
Sbjct: 198 LLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVS-WSAMI 256

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +   +NGK  ++ ELF+ M +E  +   +S T++++L++   L +LE G+++H   +   
Sbjct: 257 ACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRG 316

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
               L V +AL+++Y++  +LE    +F++M  +D V WN +IS+Y   GF ++++++  
Sbjct: 317 LDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFK 376

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS-LIDMYCEC 382
            M+  G      + ++ + + S    +E GK +  +++R    +    H + ++D+    
Sbjct: 377 EMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRA 436

Query: 383 EDLNCARKIFDSVKTKTVVS-WSSMIKGYVTH 413
             L+ A KI D ++ +     W S++     H
Sbjct: 437 NRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIH 468


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/664 (29%), Positives = 348/664 (52%), Gaps = 4/664 (0%)

Query: 53   ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
            A  +I+ GL   + ++++LI  + NLG +  ++++F+ +   +++ +  ++   S  G  
Sbjct: 470  ASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGIC 529

Query: 113  EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
             K  LV+  M    + P   T   ++  C+    F  G  IH+  ++   DS   V +AL
Sbjct: 530  SKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINAL 589

Query: 173  VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
            V  Y       + E        +DL S WN++IS  VQN  S  + +    +       +
Sbjct: 590  VNMYSAAGKLSDAEFLFWNMSRRDLIS-WNTMISSYVQNCNSTDALKTLGQLFHTNESPN 648

Query: 233  SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
              T  + L +     +L  G++VH + +     ++L V  +L++MY K  S+EDA+ +F 
Sbjct: 649  HLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ 708

Query: 293  KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE- 351
             M   D V +N++I  Y       +++++   M  +G + +  T I    S ++  ++  
Sbjct: 709  SMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHN 768

Query: 352  WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            +G+ +HA ++R G      V NSLI MY +C +L  +  IF+S+  K +VSW+++I   V
Sbjct: 769  YGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANV 828

Query: 412  THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                  EAL+LF +M+  G ++D V +   L +C ++ +LE    LHG  MK GL+S S 
Sbjct: 829  QLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSY 888

Query: 472  VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
            V  A    Y KCG ++   ++  ++ I  +    WN++IS YAK+G + +  + + QM  
Sbjct: 889  VVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ--CWNTLISGYAKYGYFKEAEETFKQMVA 946

Query: 532  SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            +  +PD +TF+ LL+AC +AGLV++G   +  M  S+G  P  +H   +V+LLGR G   
Sbjct: 947  TGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFA 1006

Query: 592  EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
            EA + +++MP  P+  +W  LLS+ + H   E+   TA+KL+ ++P +   YVLLSN+YA
Sbjct: 1007 EAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYA 1066

Query: 652  AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
               +W  V K+R+ ++   + K P CSW+++   V  F   D+ H  A+ IY  L  + L
Sbjct: 1067 TNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLL 1126

Query: 712  EIME 715
            ++ E
Sbjct: 1127 KLRE 1130



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/576 (26%), Positives = 292/576 (50%), Gaps = 6/576 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  N+ + + L+  Y + G++S +Q++F  +   N + +  ++  LS  G  E+ L  Y
Sbjct: 376 GLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAY 435

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           +QM    +    + +  V+  C  L + + G ++ +QV+  G  +   V ++L+  +   
Sbjct: 436 RQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNL 495

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
               + EK   + +  D  S WN++IS+    G   K F +F  MR  G   D+ TL +L
Sbjct: 496 GRVHDAEKLFDRMEEHDTIS-WNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSL 554

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           +           G  +H + + S     ++V  AL++MYS    L DA+ LF  MS +D 
Sbjct: 555 MSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 614

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           + WN MIS+Y Q+    ++L+ L  +  +    +  T  +A+ + S+   +  GK +HA 
Sbjct: 615 ISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAI 674

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           VL+      + V NSLI MY +C  +  A K+F S+ T  +VS++ +I GY   +   +A
Sbjct: 675 VLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKA 734

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYLHGYSMKLGLNSLSSVNTAIFI 478
           +++FS M+  G++ +++T+INI  +  +   L +  + LH Y ++ G  S   V  ++  
Sbjct: 735 MQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLIT 794

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAKCG +E +  +F+   I +K+I++WN++I+A  + G   +  KL+  M+ +  + D 
Sbjct: 795 MYAKCGNLESSTNIFN--SITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDR 852

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +     L++C +   +EEG +    +    G +       + +++ G+ G MDE  ++V 
Sbjct: 853 VCLAECLSSCASLASLEEG-MQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVP 911

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           D   +P  + W  L+S    +   + AE T +++++
Sbjct: 912 DQAIRPQ-QCWNTLISGYAKYGYFKEAEETFKQMVA 946



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 196/402 (48%), Gaps = 17/402 (4%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR----WN 202
           G  IHA   + G      +G AL+  Y          +G++   QR F ++  R    W 
Sbjct: 365 GAAIHALTHRAGLMGNVYIGTALLHLY--------GSRGIVSDAQRLFWEMPERNVVSWT 416

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +L+     NG  E++   ++ MR +G   ++     ++     L++   G  V    +VS
Sbjct: 417 ALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVS 476

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                +SV  +L++M+  L  + DA+ LFD+M + D + WN MIS Y   G   +   + 
Sbjct: 477 GLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVF 536

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M   G R D  T  + +S  ++  +   G  +H+  LR+  D  V+V N+L++MY   
Sbjct: 537 SDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAA 596

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             L+ A  +F ++  + ++SW++MI  YV +  S +AL+   ++       + +T  + L
Sbjct: 597 GKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSAL 656

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC + GAL   K +H   ++L L     V  ++   Y KC  +E A ++F  + + + D
Sbjct: 657 GACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF--QSMPTHD 714

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
           I+++N +I  YA   D ++  ++++ M+ + ++P+ IT + +
Sbjct: 715 IVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 200/406 (49%), Gaps = 6/406 (1%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL---KSLELGRIV 255
           S W + +S  V+ G   K+FE+ + MR  G       L +L+ +       + +  G  +
Sbjct: 309 STWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAI 368

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H +   +    ++ + TALL +Y     + DA+ LF +M +++ V W  ++ A   +G+ 
Sbjct: 369 HALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYL 428

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+L     M R G   +       VS   +++N   G Q+ + V+ +G   QVSV NSL
Sbjct: 429 EEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSL 488

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           I M+     ++ A K+FD ++    +SW++MI  Y       +   +FS+M+  G+  D 
Sbjct: 489 ITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDA 548

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+ +++  C +     H   +H   ++  L+S  +V  A+   Y+  G +  A  LF  
Sbjct: 549 TTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-- 606

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +  +D+I+WN+MIS+Y ++ + +   K   Q+  ++  P+ +TF   L AC + G + 
Sbjct: 607 WNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALI 666

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+++   + +    + +     S++ + G+   M++A ++ + MP
Sbjct: 667 DGKMVHAIVLQ-LSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 711



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 158/332 (47%), Gaps = 13/332 (3%)

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM-- 347
           LFD+M+D+    W   +S   + G   ++ E+L  M   G     F   + V++      
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 348 -KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
            + I  G  +HA   R G    V +  +L+ +Y     ++ A+++F  +  + VVSW+++
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKL- 464
           +    ++    EALR + +M+ +GV  +      ++  C   G+LE+ V  L   S  + 
Sbjct: 419 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLC---GSLENEVPGLQVASQVIV 475

Query: 465 -GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            GL +  SV  ++   +   G +  A +LFD  +++  D I+WN+MIS Y+  G  S+CF
Sbjct: 476 SGLQNQVSVANSLITMFGNLGRVHDAEKLFD--RMEEHDTISWNAMISMYSHQGICSKCF 533

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            +++ M+   +RPD  T   L++ C ++     G  I      S   + S     ++VN+
Sbjct: 534 LVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRS-SLDSSVTVINALVNM 592

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              AG + +A  L  +M  + D   W  ++S+
Sbjct: 593 YSAAGKLSDAEFLFWNMS-RRDLISWNTMISS 623


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 305/542 (56%), Gaps = 38/542 (7%)

Query: 201 WNSLI-SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN LI +LA  +   +      +++       +  T   L+++  E +   +G+ VH +A
Sbjct: 207 WNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMA 266

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNIMISAYYQSGFPKE 317
           + + F  D+ V  +L+  Y+    L+ A ++F+ +  ++KD V WN M++ + Q G+P +
Sbjct: 267 IKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDK 326

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +L+L   M   G   +  T ++ +S+ +   N+  G+++   + RN     ++V N+ ID
Sbjct: 327 ALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATID 386

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT------------------------- 412
           M+ +C ++  AR +FD+++ + VVSW+++I GY                           
Sbjct: 387 MFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVL 446

Query: 413 ---HDQS---LEALRLFSEMKL--EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
              ++QS    EAL +F E++L   G   D VT+++ L AC  +GA++  +++HGY  K 
Sbjct: 447 ISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE 506

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            +    ++ T++   Y+K G +E A E+F    I +KD+  W++MI+  A HG      +
Sbjct: 507 RIQLNRNLATSLIDMYSKSGDVEKAIEVF--HSIGNKDVFVWSAMIAGLAMHGRGEAAIE 564

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L+  M+++ V+P+ +TF  LL AC ++GLV+EG+ +F EM+  YG  P  +HY+ MV++L
Sbjct: 565 LFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVL 624

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAGH++EA + ++ MP  P A VWG LL AC +H   ELAE    +L+ +EP N G YV
Sbjct: 625 GRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYV 684

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LLSN+YA  G W GV+++R  +RD GLKK  GCS IEI   VHEF   D +HP +  IY 
Sbjct: 685 LLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYA 744

Query: 705 IL 706
            L
Sbjct: 745 KL 746



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 237/477 (49%), Gaps = 49/477 (10%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDS-YANLGL 80
           PA+ T    T     +L   C + + L+QIHA+ +  + LH     S     + +++   
Sbjct: 132 PASAT---ATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSA 188

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY-PAEDTYPFVIR 139
           L  +++VF+ I  PN   +  +++ L+   +  +++LV+ +M   S + P + T+P +I+
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK 248

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG------GFENEKGMIQRK 193
           + +    F+ G+ +H   +K  F     V ++L+ FY  C         FE    MI+  
Sbjct: 249 AVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFE----MIEGN 304

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            KD+ S WNS+++  VQ G  +K+ +LF+ MR EG   ++ T+++++ +  +  +L LGR
Sbjct: 305 NKDIVS-WNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGR 363

Query: 254 IVH--------------CVAVVSDFCK-----------------DLSVNTALLSMYSKLA 282
            V               C A +  F K                 D+   T ++  Y+K++
Sbjct: 364 KVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMS 423

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL--MCMVRSGFRADLFTAIAA 340
               A+ +FD M  KD   WN++IS Y QSG PKE+L +   + + +SG R D  T ++ 
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLST 483

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +S+ + +  ++ G+ +H  + +       ++  SLIDMY +  D+  A ++F S+  K V
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDV 543

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
             WS+MI G   H +   A+ LF +M+   V+ + VT  N+L AC + G ++  K L
Sbjct: 544 FVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 196/418 (46%), Gaps = 52/418 (12%)

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRADL 334
           + +S  ++L+ A+ +FD++   +   WNI+I A   S  P +S+ + + M+  S F  + 
Sbjct: 181 AAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK 240

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT    + +++  +    GK +H   ++      V V NSLI  Y  C  L+ A  +F+ 
Sbjct: 241 FTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 395 VK--TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL- 451
           ++   K +VSW+SM+ G+V      +AL LF  M+ EGV  + VT+++++ AC     L 
Sbjct: 301 IEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 452 ---EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
              +   Y+    M + LN    V  A    + KCG +E+A  LFD   ++ +D+++W +
Sbjct: 361 LGRKVCDYIDRNEMMMNLN----VCNATIDMFVKCGEVEIARGLFD--NMEKRDVVSWTT 414

Query: 509 MISAYAK---HG---------------DWSQCFKLYT---------------QMKQSDVR 535
           +I  YAK   HG                W+     Y                Q+ +S  R
Sbjct: 415 IIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGAR 474

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD +T L  L+AC   G ++ G  I   +K+    + ++    S++++  ++G +++A E
Sbjct: 475 PDQVTLLSTLSACAQLGAMDIGEWIHGYIKKER-IQLNRNLATSLIDMYSKSGDVEKAIE 533

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM-EPENAGNYVLLSNIYAA 652
           +   +  K D  VW  +++   MH   E A    E  + M E +   N V  +N+  A
Sbjct: 534 VFHSIGNK-DVFVWSAMIAGLAMHGRGEAA---IELFLDMQETQVKPNSVTFTNLLCA 587



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 142/310 (45%), Gaps = 18/310 (5%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDM--YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           KQ+HA +LR    +     + L     +     L+ ARK+FD +    + SW+ +I+   
Sbjct: 156 KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALA 215

Query: 412 THDQSLEALRLFSEMKLEGV----EVDFVTIINILPA--CVNIGALEHVKYLHGYSMKLG 465
           T    ++++ +F  M  +      +  F  +I  +    C  +G     K +HG ++K  
Sbjct: 216 TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVG-----KAVHGMAIKTS 270

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
                 V  ++   YA CG +++A  +F+  + ++KDI++WNSM++ + + G   +   L
Sbjct: 271 FGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDL 330

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M+   V P+ +T + +++AC     +  GR +   +  +          A+ +++  
Sbjct: 331 FERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNAT-IDMFV 389

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           + G ++ AR L  +M  K D   W  ++      SE  +A    +   SM  ++   + +
Sbjct: 390 KCGEVEIARGLFDNME-KRDVVSWTTIIDGYAKMSEHGIAR---DIFDSMPRKDIPAWNV 445

Query: 646 LSNIYAAAGK 655
           L + Y  +G+
Sbjct: 446 LISGYEQSGR 455


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 207/646 (32%), Positives = 345/646 (53%), Gaps = 19/646 (2%)

Query: 51  IHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +HA   RY +L G   ++ ++S+L+  YA  G +  + +VF  +   + + +  ++    
Sbjct: 133 VHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCV 192

Query: 108 KFGEYEKTLLVYKQMAL----QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
           + GE  + L    +M       S+ P   T    + +C  L +  SG  +H  VVK+G  
Sbjct: 193 RNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIG 252

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  AL   Y KC    +     ++   KD+ S W SLI +  + G   ++ ELF+ 
Sbjct: 253 DSPMVISALFSMYSKCYSTEDACALFLELPEKDVVS-WTSLIGIYCRRGLITEAMELFQQ 311

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G + D   +  +L       ++  G+  H V    +F   + +  AL+SMY K   
Sbjct: 312 MMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEM 371

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFR----ADLFTAI 338
           ++ A  +F  +  +D   WN+M+  Y ++G   + LEL   M +R  +     AD  + +
Sbjct: 372 VDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVAD--SLV 429

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           +A+SS S +  +  G+  H   +++  D   SV N LI MY  C   + A KIF   K K
Sbjct: 430 SAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLK 489

Query: 399 T-VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
             VV+W+++I  Y     S  A+ L+ +M +EG+  +  T+I ++ AC N+ ALE  + +
Sbjct: 490 GDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKI 549

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H Y  ++G +   S+NTA+   YAKCG + +A  +FD   +   D++ WN MIS Y  HG
Sbjct: 550 HSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFD--SMLQHDVVAWNVMISGYGMHG 607

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
           +  Q  +L+ +M+   ++P+ +TFL +L+A  ++GL+EEGR +F  M + Y  EP+ +HY
Sbjct: 608 EAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGK-YSLEPNLKHY 666

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
           A MV+LLG++GH+ EA ++V  MP +PD  +WG LLSACK+H   E+    A+K  + +P
Sbjct: 667 ACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFASDP 726

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           EN G Y+L+SN Y  A KW+ + K+R  +++ G++K  G S ++ G
Sbjct: 727 ENEGYYILISNSYGGAKKWDEIEKLRETMKNLGVQKGVGWSAVDYG 772



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 191/391 (48%), Gaps = 14/391 (3%)

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           LEL R VH +AV S   +   +   L+S YS       A + F      D  +WN +I  
Sbjct: 27  LELLR-VHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRT 85

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN----G 364
           ++ +     +L     M+ SG R   FTA  A S+ + +  +  G  +HA  +R     G
Sbjct: 86  HHCASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVG 145

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
               V+V +SL+ MY  C ++  A K+F+ +  + VV+W+++I G V + +S E LR   
Sbjct: 146 DGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLV 205

Query: 425 EM-KLEG---VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           EM +L G   V  +  T+ + L AC  +  L   + LHGY +K+G+     V +A+F  Y
Sbjct: 206 EMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMY 265

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           +KC   E A  LF E  +  KD+++W S+I  Y + G  ++  +L+ QM +S ++PD I 
Sbjct: 266 SKCYSTEDACALFLE--LPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEIL 323

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
              +L+   N G V  G+  F  +     +  S     +++++ G+   +D A  + + +
Sbjct: 324 VSCVLSGLGNNGNVHGGK-TFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFR-L 381

Query: 601 PFKPDARVWGPLLSA-CKMHSETELAELTAE 630
             + DA  W  ++   CK   + +  EL  E
Sbjct: 382 LHQRDADSWNLMVVGYCKAGCDVKCLELYRE 412


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 305/545 (55%), Gaps = 5/545 (0%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           V+ +C    +   G  IHA  VK+G ++  ++ +ALV+ Y K  G  E    +     + 
Sbjct: 47  VVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKF-GDVEASMQVFDGMLEQ 105

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
            +  WNS I   +  G       +F+ M        S TL +LL + VEL S +LGR VH
Sbjct: 106 NEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVH 165

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
             ++      D+ V  +L+ MY+K  SLE A  +F++M D++ V WN MI+   Q+G   
Sbjct: 166 GYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAET 225

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+  L+  M +SG   +  T +  + + + M +++ GKQ+HA  +R G  + + + N+LI
Sbjct: 226 EAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALI 285

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           DMY +C  L+ AR IF+    K  VS++++I GY       E+L LF +M+  G++ D V
Sbjct: 286 DMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAV 344

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           + +  L AC N+   +H K +H   ++  L+    ++ ++   Y K G +  A ++F+  
Sbjct: 345 SFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFN-- 402

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           KI  KD+ +WN+MI  Y  HG     F+L+  MK   +  D ++++ +L AC + GLV++
Sbjct: 403 KITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDK 462

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+  F +M  +   EP Q HYA MV+LLGRAG + +  E+++DMPF  ++ VWG LL AC
Sbjct: 463 GKKYFSQMV-AQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGAC 521

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           ++H   ELA+  AE L  ++PE++G Y L+ N+YA  G+WN   K+R  ++ R ++K P 
Sbjct: 522 RIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPA 581

Query: 677 CSWIE 681
            SW++
Sbjct: 582 YSWVQ 586



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 219/432 (50%), Gaps = 19/432 (4%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNSL+S  + NG    +      M   G   +  +L++++ +    +  + G  +H +AV
Sbjct: 9   WNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAV 68

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                  +++  AL+ MY K   +E +  +FD M +++ V WN  I  +  +GF  + L 
Sbjct: 69  KVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLR 128

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M          T  + + ++  + + + G+++H   ++   D  + V NSL+DMY 
Sbjct: 129 MFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYA 188

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   L  A  IF+ +K + VVSW++MI   V +    EA RL ++M+  G   + +T++N
Sbjct: 189 KFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVN 248

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +LPAC  + +L+  K +H +S++ GL     ++ A+   Y+KCG + +A  +F+  +   
Sbjct: 249 VLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE--- 305

Query: 501 KDIITWNSMISAYAKHGDWSQCFK---LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           KD +++N++I  Y++   W  CF+   L+ QM+   +  D ++F+G L+AC N  + + G
Sbjct: 306 KDDVSYNTLILGYSQ-SPW--CFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHG 362

Query: 558 R----IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +    ++ + +   + +  +     S+++L  + G +  A ++   +  K D   W  ++
Sbjct: 363 KEIHCVLVRRLLSGHPFLSN-----SLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMI 416

Query: 614 SACKMHSETELA 625
               MH + ++A
Sbjct: 417 LGYGMHGQIDIA 428



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 260/560 (46%), Gaps = 61/560 (10%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           IHA  + + GL+  + L++ L+D Y   G +  S QVF+ +   N + + + +      G
Sbjct: 63  IHALAVKV-GLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAG 121

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
            Y   L ++++M+  ++ P   T   ++ +   L  F  G ++H   +K   D    V +
Sbjct: 122 FYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVAN 181

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
           +LV+ Y K  G  E    +    F+ +K R    WN++I+  VQNG   ++F L   M+ 
Sbjct: 182 SLVDMYAKF-GSLEKASTI----FEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQK 236

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G   +S TL+N+L +   + SL++G+ +H  ++      DL ++ AL+ MYSK   L  
Sbjct: 237 SGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSL 296

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +F++ S+KD V +N +I  Y QS +  ESL L   M   G   D  + + A+S+ + 
Sbjct: 297 ARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTN 355

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           +   + GK++H  ++R        + NSL+D+Y +   L  A KIF+ +  K V SW++M
Sbjct: 356 LSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTM 415

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I GY  H Q   A  LF  MK +G++ D V+ I +L AC + G ++  K           
Sbjct: 416 ILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFS------- 468

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                               +M  +  + +++       +  M+    + G  S+C ++ 
Sbjct: 469 --------------------QMVAQNIEPQQMH------YACMVDLLGRAGQLSKCAEII 502

Query: 527 TQM---KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH---YASM 580
             M     SDV      +  LL AC   G +E       +    + +E   EH   Y  M
Sbjct: 503 RDMPFPANSDV------WGALLGACRIHGNIE-----LAQWAAEHLFELKPEHSGYYTLM 551

Query: 581 VNLLGRAGHMDEARELVKDM 600
           +N+    G  +EA ++ K M
Sbjct: 552 INMYAETGRWNEANKIRKLM 571



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 155/267 (58%), Gaps = 2/267 (0%)

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M ++D V WN ++SA+  +G   ++   L+ M+RSGF  ++ + ++ V +  T +  ++G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
             +HA  ++ G +  V++ N+L+DMY +  D+  + ++FD +  +  VSW+S I  ++  
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               + LR+F +M    V    +T+ ++LPA V +G+ +  + +HGYS+K  ++    V 
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVA 180

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            ++   YAK G +E A  +F  E++  +++++WN+MI+   ++G  ++ F+L T M++S 
Sbjct: 181 NSLVDMYAKFGSLEKASTIF--EQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSG 238

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRII 560
             P+ IT + +L AC     ++ G+ I
Sbjct: 239 ECPNSITLVNVLPACARMASLKMGKQI 265



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 169/368 (45%), Gaps = 8/368 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H  Y I   +  ++ ++++L+D YA  G L  +  +F  +   N + +  ++ NL +
Sbjct: 162 REVHG-YSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQ 220

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFD 166
            G   +   +   M      P   T   V+ +C+ +     G++IHA  ++ G  FD F 
Sbjct: 221 NGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLF- 279

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            + +AL++ Y KC G     + + +R  KD  S +N+LI    Q+    +S  LFK MR 
Sbjct: 280 -ISNALIDMYSKC-GQLSLARNIFERSEKDDVS-YNTLILGYSQSPWCFESLLLFKQMRS 336

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            G ++D+ + +  L +   L   + G+ +HCV V         ++ +LL +Y+K   L  
Sbjct: 337 VGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVT 396

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +F+K++ KD   WN MI  Y   G    + EL   M   G   D  + IA +++ S 
Sbjct: 397 ASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSH 456

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN-CARKIFDSVKTKTVVSWSS 405
              ++ GK+  + ++    + Q   +  ++D+      L+ CA  I D         W +
Sbjct: 457 GGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGA 516

Query: 406 MIKGYVTH 413
           ++     H
Sbjct: 517 LLGACRIH 524


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 292/522 (55%), Gaps = 6/522 (1%)

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
           L + WN+ +    +  +  ++  L+  M   G   ++ T    L+S   L    LG   H
Sbjct: 4   LSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFH 63

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAYYQSGF 314
                     +  V T L+SMY K + +++A+ +F++   S K  V +N ++S Y  +  
Sbjct: 64  GQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSK 123

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             +++ L   M   G   +  T +  + +  +  N+E G  +H + L+ G D  VSV N 
Sbjct: 124 CSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNC 183

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
            I MY +C  +N A+K+FD +  K ++SW++M+ GY  +  +   L L+  M + GV  D
Sbjct: 184 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPD 243

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAGELF 493
            VT++ +L +C N+GA + V +   + M+  G  S   +N A+   YA+CG +  A  +F
Sbjct: 244 PVTLVGVLSSCANLGA-QSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVF 302

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D   +  + +++W ++I  Y  HG      +L+ +M +S + PD   F+ +L+AC +AGL
Sbjct: 303 D--GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGL 360

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
            ++G   FK MK +Y  EP  EHY+ MV+LLGRAG + EA+ L++ MP KPD  VWG LL
Sbjct: 361 TDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 420

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
            ACK+H   ELAEL  E++I +EPEN G YVLLSNIY+ A    GV ++R  ++++ LKK
Sbjct: 421 GACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKK 480

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            PGCS++E+   VH F   D++H Q+D IY +L  LE  IM+
Sbjct: 481 DPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQ 522



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 218/438 (49%), Gaps = 23/438 (5%)

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           N++++P    + T L+ L+K  ++ + L +Y QM      P   T+PF ++SC+ L   I
Sbjct: 2   NALSTP----WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPI 57

Query: 149 SGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGF-ENEKGMIQRKF--KDLKSRWNS 203
            G + H Q+ K+G  F+ F   G  L+  Y  C G   +N + + +  F  + L   +N+
Sbjct: 58  LGSQFHGQITKVGCVFEPFVQTG--LISMY--CKGSLVDNARKVFEENFHSRKLTVCYNA 113

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           L+S  V N K   +  LF+ M  EG   +S TL+ L+ + V   +LELG  +HC  +   
Sbjct: 114 LVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG 173

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D+SV    ++MY K  S+  A+ LFD+M  K  + WN M+S Y Q+G     LEL  
Sbjct: 174 FDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYR 233

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M  +G   D  T +  +SS + +     G ++   +  +G      ++N+LI+MY  C 
Sbjct: 234 NMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCG 293

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           +L  A+ +FD +  +T+VSW+++I GY  H     A++LF EM   G+E D    + +L 
Sbjct: 294 NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 353

Query: 444 ACVNIG----ALEHVKYL-HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           AC + G     LE+ K +   Y ++ G    S +   +     + G ++ A  L +   I
Sbjct: 354 ACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLL----GRAGRLKEAQTLIESMPI 409

Query: 499 DSKDIITWNSMISAYAKH 516
              D   W +++ A   H
Sbjct: 410 KP-DGAVWGALLGACKIH 426



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 123/293 (41%), Gaps = 28/293 (9%)

Query: 33  THSFSLLNL---CENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
            +S +LL L   C +P +L+    +H    + +G   ++ + +  I  Y   G ++ +Q+
Sbjct: 141 VNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 199

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           +F+ +     + +  ++   ++ G     L +Y+ M +  ++P   T   V+ SC+ L  
Sbjct: 200 LFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGA 259

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
              G ++  ++   GF S   + +AL+  Y +C G     + +     +     W ++I 
Sbjct: 260 QSVGHEVEFKMQASGFTSNPFLNNALINMYARC-GNLTKAQAVFDGMPERTLVSWTAIIG 318

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               +G  E + +LFK M   G E D    + +L +       + G          ++ K
Sbjct: 319 GYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL---------EYFK 369

Query: 267 DLSVN----------TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
            +  N          + ++ +  +   L++A+ L + M  K D  VW  ++ A
Sbjct: 370 MMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 422


>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
 gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
          Length = 706

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 210/651 (32%), Positives = 355/651 (54%), Gaps = 43/651 (6%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM-- 122
           L  +++L+ +Y   GLLS + ++ +     ++  Y +++    + G     L  +  M  
Sbjct: 65  LAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHCRLGAPLDALRAFLDMLD 124

Query: 123 ---ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
              +  ++ P E T   V+++C    D   G  +H  +V  GF     V  +LV  Y K 
Sbjct: 125 WGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKA 184

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
                  + ++    +D+ S W ++IS  V NG  E+  E+F +M  +G   ++ T++++
Sbjct: 185 GDVVSARRLVLGLPCRDVVS-WTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSV 243

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           +++   + + EL   VH + V+ +   D SV  +L+ MY+K   +E+A  LF        
Sbjct: 244 IQACSLMGASELFSPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIWLFRGF----- 298

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS-TMKNIEWGKQMHA 358
                    Y +SG         +C        D+  A+    +IS ++KN   G  +HA
Sbjct: 299 ---------YLKSGN--------VCS-----NEDVLAAVLYGCTISGSVKN---GVGVHA 333

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
           + ++ G+   +S+ NSL+ MY   E ++ A  +F+ +K K +VSW+++I      D+  E
Sbjct: 334 HTIKIGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNE 393

Query: 419 ALRLFSEMKLE--GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
           A+ LFS +     G+  DFVT+++IL AC N G L   + LHGY MK G     S+  A+
Sbjct: 394 AMELFSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNAL 453

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR- 535
              YAK G I+ A  +F  E++D KD+++WNSMI+AY  HGD     +++ Q+K +    
Sbjct: 454 ITMYAKLGRIDFAEMIF--ERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPV 511

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+ ITF+ +++AC ++GL+ EG   F+ M   +  EPS +HYA +V+LLGR+G   EA E
Sbjct: 512 PNAITFVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEE 571

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
            ++DMP  P++ +WGPLL+AC++H   +LAE  A++L ++EPE+    V LSN YA+AG+
Sbjct: 572 FIRDMPVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASAGR 631

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKL-VHEFWAADQSHPQADAIYTI 705
           W   AK+RT +R  GL+K  G S++++G +   +F +AD  H  A+ IY++
Sbjct: 632 WRDAAKIRTEMRRVGLRKETGWSFVDVGGVESFKFVSADTRHHDAEEIYSV 682



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 193/430 (44%), Gaps = 39/430 (9%)

Query: 26  TRPH-MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
            RP+  TA        L  + +  + +H  Y++  G   +  +  +L++ YA  G +  +
Sbjct: 132 VRPNEFTAAAVLQACGLARDERLGRMVHG-YLVAGGFCGDPFVVGSLVNMYAKAGDVVSA 190

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           +++   +   + + +  I+      G  E+ L V+  M    + P   T   VI++CS +
Sbjct: 191 RRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQACSLM 250

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                   +HA VV             L+E         E++  ++           NSL
Sbjct: 251 GASELFSPVHALVV-------------LLE--------LEHDASVV-----------NSL 278

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSG--TLINLLRSTVELKSLELGRIVHCVAVVS 262
           I +  +NG  E++  LF+   ++     S    L  +L       S++ G  VH   +  
Sbjct: 279 IMMYAKNGFVEEAIWLFRGFYLKSGNVCSNEDVLAAVLYGCTISGSVKNGVGVHAHTIKI 338

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                +S+  +L+ MY++   ++ A  +F+ M  KD V WN +IS   +S    E++EL 
Sbjct: 339 GAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELF 398

Query: 323 MCM--VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
             +     G   D  T ++ + + S    +  G+ +H  ++++G  Y VS+ N+LI MY 
Sbjct: 399 SVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNALITMYA 458

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV-DFVTII 439
           +   ++ A  IF+ +  K +VSW+SMI  Y  H     ALR+F ++K  G  V + +T +
Sbjct: 459 KLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPNAITFV 518

Query: 440 NILPACVNIG 449
           +++ AC + G
Sbjct: 519 SVISACSHSG 528



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 30/266 (11%)

Query: 356 MHANVLRNGS----DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +HA +L++G+       ++  NSL+  Y +C  L+ A ++ D    +   +++S+I  + 
Sbjct: 48  LHAALLKSGALRSPQAPLAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHC 107

Query: 412 THDQSLEALRLFSEMKLEG-----VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
                L+ALR F +M   G     V  +  T   +L AC         + +HGY +  G 
Sbjct: 108 RLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGF 167

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                V  ++   YAK G +  A  L     +  +D+++W ++IS    +G   +  +++
Sbjct: 168 CGDPFVVGSLVNMYAKAGDVVSARRLV--LGLPCRDVVSWTAIISGCVLNGMLEEGLEVF 225

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVE-----EGRIIFKEMKESYGYEPSQEHYASMV 581
             M +  V P+ +T L ++ AC   G  E        ++  E+          EH AS+V
Sbjct: 226 VMMLEDGVLPNNVTMLSVIQACSLMGASELFSPVHALVVLLEL----------EHDASVV 275

Query: 582 NLL----GRAGHMDEARELVKDMPFK 603
           N L     + G ++EA  L +    K
Sbjct: 276 NSLIMMYAKNGFVEEAIWLFRGFYLK 301



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
           H   L   +++     L++ N+ +  +Y +CG +  A  L D      +D  T+ S+ISA
Sbjct: 49  HAALLKSGALRSPQAPLAATNS-LLHAYLQCGLLSRALRLLDGTP--RRDAATYASLISA 105

Query: 513 YAKHGDWSQCFKLYTQM-----KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           + + G      + +  M       + VRP+  T   +L AC   GL  + R+    M   
Sbjct: 106 HCRLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQAC---GLARDERL--GRMVHG 160

Query: 568 Y----GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           Y    G+        S+VN+  +AG +  AR LV  +P + D   W  ++S C ++   E
Sbjct: 161 YLVAGGFCGDPFVVGSLVNMYAKAGDVVSARRLVLGLPCR-DVVSWTAIISGCVLNGMLE 219


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 306/569 (53%), Gaps = 10/569 (1%)

Query: 150 GEKIHAQVVKL---GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
           G   HAQ++K       SF  + + LV  Y K D     +  +     + + + W +LI+
Sbjct: 25  GRAAHAQIIKTLDNPLPSF--IYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVT-WTALIA 81

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            +VQNG+   +   F  MR +  + +  T     +++  L+S  +G+ VH +AV +    
Sbjct: 82  GSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS 141

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+ V  +   MYSK    E+A+ +FD+M +++   WN  +S     G   ++L   +   
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
             G+  +L T  A +++ +    +  G+Q+H  VL++G +  VSV N LID Y +C  + 
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
           C+  IF  +     VSW SMI  YV +D+  +A  +F   + EG+E     + ++L AC 
Sbjct: 262 CSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACA 321

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +  LE  K +H  ++K  +     V +A+   Y KCG IE A   FDE  +  ++++TW
Sbjct: 322 GLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDE--MPERNLVTW 379

Query: 507 NSMISAYAKHGDWSQCFKLYTQMK--QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           N+MI  YA  G       L+ +M      V P+ +TF+ +L+AC  AG V  G  IF+ M
Sbjct: 380 NAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESM 439

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           +  YG EP  EHYA +V+LLGRAG +++A + +K MP +P   VWG LL A KM  ++EL
Sbjct: 440 RGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSEL 499

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
            ++ A+ L  ++P ++GN+VLLSN++AAAG+W     +R  ++D G+KK  GCSWI  G 
Sbjct: 500 GKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGN 559

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEI 713
            VH F A D SH +   I  +L  L  E+
Sbjct: 560 AVHVFQAKDTSHERNSEIQAMLAKLRGEM 588



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/515 (23%), Positives = 232/515 (45%), Gaps = 34/515 (6%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           ++L++ Y+ L   + +Q + +   + + + +  ++    + G +   L  +  M   S+ 
Sbjct: 46  NHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQ 105

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T+P   ++   L   + G+++HA  VK G  S   VG +  + Y K  G  E  + 
Sbjct: 106 PNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKA-GLTEEARK 164

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           M     +   + WN+ +S +V  G+ + +   F   R EG E +  T    L +      
Sbjct: 165 MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASY 224

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L LGR +H   + S F  D+SV   L+  Y K   +  ++++F  +S  + V W  MI +
Sbjct: 225 LRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVS 284

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y Q+   +++  + +   + G     F   + +S+ + +  +E GK +H   ++      
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGN 344

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           + V ++L+DMY +C  +  A + FD +  + +V+W++MI GY    Q+  A+ LF EM  
Sbjct: 345 IFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTC 404

Query: 429 EG--VEVDFVTIINILPAC-----VNIGALEHVKYLHG-YSMKLGLNSLSSVNTAIFISY 480
               V  ++VT + +L AC     VN+G +E  + + G Y ++ G    + V   +    
Sbjct: 405 GSHRVAPNYVTFVCVLSACSRAGSVNVG-MEIFESMRGRYGIEPGAEHYACVVDLL---- 459

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
            + G +E A +   +  I    +  W +++ A           K++ + +   V  D + 
Sbjct: 460 GRAGMVEQAYQFIKKMPI-RPTVSVWGALLGAS----------KMFGKSELGKVAADNLF 508

Query: 541 FLGLLTAC---------VNAGLVEEGRIIFKEMKE 566
            L  L +            AG  EE  ++ KEMK+
Sbjct: 509 ELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKD 543



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 180/400 (45%), Gaps = 24/400 (6%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTI 102
            +P   +Q+HA   +  G   ++ +  +  D Y+  GL   ++++F+ +   N   +   
Sbjct: 122 RSPLVGKQVHA-LAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           L N    G Y+  L  + +   +   P   T+   + +C+       G ++H  V++ GF
Sbjct: 181 LSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGF 240

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSF 218
           ++   V + L++FY KC     ++ G  +  F  +       W S+I   VQN + EK+ 
Sbjct: 241 EADVSVANGLIDFYGKC-----HQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKAC 295

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
            +F   R EG E     + ++L +   L  LE+G+ VH +AV +    ++ V +AL+ MY
Sbjct: 296 LVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMY 355

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA--DLFT 336
            K  S+EDA+  FD+M +++ V WN MI  Y   G    ++ L   M     R   +  T
Sbjct: 356 GKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVT 415

Query: 337 AIAAVSSISTMKNIEWGKQMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
            +  +S+ S   ++  G ++  ++  R G +     +  ++D+      +  A +    +
Sbjct: 416 FVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKM 475

Query: 396 KTKTVVS-WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
             +  VS W ++          L A ++F + +L  V  D
Sbjct: 476 PIRPTVSVWGAL----------LGASKMFGKSELGKVAAD 505


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/623 (32%), Positives = 326/623 (52%), Gaps = 45/623 (7%)

Query: 124 LQSMYPAE-DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
           +Q  YP +  T+  ++++C    D I+G+ +HA   K        + +     Y KC G 
Sbjct: 1   MQCTYPLQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKC-GS 59

Query: 183 FENEKG---------------------------MIQRKFKDLKS----RWNSLISLAVQN 211
             N +                            + +R F ++       +N+LI+     
Sbjct: 60  LHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADR 119

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+   +  LF+ +R      D  TL  ++ +  +   + L R +HC  VV       SVN
Sbjct: 120 GECGPTLRLFEEVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVN 177

Query: 272 TALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            A+L+ YS+   L +A+ +F +M +   +D V WN MI A  Q     E++ L   MVR 
Sbjct: 178 NAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRR 237

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED--LN 386
           G + D+FT  + +++ + +K++  G+Q H  ++++G      V + LID+Y +C    + 
Sbjct: 238 GLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVE 297

Query: 387 CARKIFDSVKTKTVVSWSSMIKGY-VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
           C RK+F+ +    +V W++MI G+ +  D S + L  F EM+  G   D  + + +  AC
Sbjct: 298 C-RKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSAC 356

Query: 446 VNIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
            N+ +    K +H  ++K  +  +  SVN A+   Y+KCG +  A  +FD   +   + +
Sbjct: 357 SNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFD--TMPEHNTV 414

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           + NSMI+ YA+HG   +  +L+  M + D+ P+ ITF+ +L+ACV+ G VEEG+  F  M
Sbjct: 415 SLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMM 474

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           KE +  EP  EHY+ M++LLGRAG + EA  +++ MPF P +  W  LL AC+ H   EL
Sbjct: 475 KERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVEL 534

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           A   A + + +EP NA  YV+LSN+YA+A +W   A ++  +R+RG+KK PGCSWIEI K
Sbjct: 535 AVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDK 594

Query: 685 LVHEFWAADQSHPQADAIYTILG 707
            VH F A D SHP    I+  +G
Sbjct: 595 KVHVFVAEDTSHPMIKEIHVYMG 617



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 243/467 (52%), Gaps = 17/467 (3%)

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           + N+   + LI++YA   L+ ++++VF+ I  P+ + Y T++   +  GE   TL ++++
Sbjct: 72  YPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEE 131

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           +    +     T   VI +C   +  +   ++H  VV  G D +  V +A++  Y +   
Sbjct: 132 VRELRLGLDGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSR--K 187

Query: 182 GFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
           GF +E   + R+  +   R    WN++I    Q+ +  ++  LF+ M   G + D  T+ 
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMA 247

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA-SLEDAKMLFDKMSD 296
           ++L +   +K L  GR  H + + S F  +  V + L+ +YSK A S+ + + +F++++ 
Sbjct: 248 SVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITA 307

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMC---MVRSGFRADLFTAIAAVSSISTMKNIEWG 353
            D V+WN MIS +  S +   S + L C   M R+GFR D  + +   S+ S + +   G
Sbjct: 308 PDLVLWNTMISGF--SLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLG 365

Query: 354 KQMHANVLRNGSDY-QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           KQ+HA  +++   Y +VSV+N+L+ MY +C +++ AR++FD++     VS +SMI GY  
Sbjct: 366 KQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQ 425

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSS 471
           H   +E+LRLF  M  + +  + +T I +L ACV+ G +E   KY +    +  +   + 
Sbjct: 426 HGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAE 485

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             + +     + G ++ A  + +    +    I W +++ A  KHG+
Sbjct: 486 HYSCMIDLLGRAGKLKEAERIIETMPFNPGS-IEWATLLGACRKHGN 531



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 188/391 (48%), Gaps = 11/391 (2%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT---SPNSLLYGTILK 104
           ++Q+H  ++++ G      +++ ++  Y+  G LS +++VF  +      + + +  ++ 
Sbjct: 158 VRQLHC-FVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIV 216

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
              +  E  + + ++++M  + +     T   V+ + +C+ D + G + H  ++K GF  
Sbjct: 217 ACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHG 276

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS-LAVQNGKSEKSFELFKL 223
              VG  L++ Y KC G     + + +         WN++IS  ++    SE     F+ 
Sbjct: 277 NSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFRE 336

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLA 282
           M+  G   D  + + +  +   L S  LG+ VH +A+ SD   + +SVN AL++MYSK  
Sbjct: 337 MQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCG 396

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           ++ DA+ +FD M + + V  N MI+ Y Q G   ESL L   M+      +  T IA +S
Sbjct: 397 NVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLS 456

Query: 343 SISTMKNIEWGKQMHANVL--RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKT 399
           +      +E G Q + N++  R   + +   ++ +ID+      L  A +I +++     
Sbjct: 457 ACVHTGKVEEG-QKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPG 515

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSE-MKLE 429
            + W++++     H     A++  +E ++LE
Sbjct: 516 SIEWATLLGACRKHGNVELAVKAANEFLRLE 546


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 203/659 (30%), Positives = 342/659 (51%), Gaps = 10/659 (1%)

Query: 29  HMTATHSFSLLNL--CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
           H++A+H+  LL L  C      +++HA  ++     +  +L++ L+ +YA LG    +  
Sbjct: 37  HVSASHASLLLRLRSCPTLAEARRLHAALLVGGHHRRGAVLAAQLVHAYARLGEAGRALS 96

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLL 145
           V + +   NS  +   +K L   G++ + L  Y  M       A+  TYP VI++C+ L 
Sbjct: 97  VLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAALG 156

Query: 146 DFISG----EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
               G    E + A VV+        V  ALV+ + KC G     + + +   +   + W
Sbjct: 157 VVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKC-GCLGEARSVFESMLERDLAAW 215

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
            ++I  AV  G    +  LF  MR EG   DS  +  ++ +    K L  G ++H  AV 
Sbjct: 216 TAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVR 275

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
                D  V+ AL+ MY K   L  A  +F  +  KD V W+ +I+ Y Q+G    S+ L
Sbjct: 276 CGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNL 335

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              MV +G + +  T  + + S+S MK    GK++H   LRNG D    + ++ ID Y  
Sbjct: 336 FTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSR 395

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              +  A  + + +  + +V W+SM+ GY  +  +  AL  F  ++  G   D VT++++
Sbjct: 396 QGSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSV 455

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           LP C +   L   K LH Y ++  ++S+ SV+ A+   Y KC C+E   E+F  + +  +
Sbjct: 456 LPVCNHHSRLIQGKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIF--QLVTDR 513

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D  T+N++IS++ KHG   +   L+  MK+  + PD +TF+ LL++C +AGL+E+G   +
Sbjct: 514 DTATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFY 573

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             M + Y   P +EHY+ +V+L  R+G +D+A + V  +  + +  V G LL AC++H+ 
Sbjct: 574 DIMLQDYNISPGKEHYSCVVDLYSRSGKLDDAWKFVSSLQDEAEIDVLGCLLGACRVHNR 633

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
            ++AEL A+++    P + G ++LLSNIYA AG W+ V ++RT + +R LK   G S I
Sbjct: 634 MDIAELVAKRIFEQNPSDPGYHILLSNIYANAGMWSHVTRIRTMIENRSLKNKTGNSLI 692


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/501 (36%), Positives = 280/501 (55%), Gaps = 36/501 (7%)

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           ++LG+  H   V+     +  +   +++MY+    L+ A ++FD++ +   +++N +I A
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 309 YYQSGFPKESLELLMCMVRS---GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           Y + G        L    R    G   D FT    + S + +  +  G+ +H   LR G 
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSV------------------------------ 395
           +    V  SLIDMY +C  +  ARK+FD +                              
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 396 -KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV--DFVTIINILPACVNIGALE 452
            + + +VSW++MI GY  +  + +AL LF EM  +G E+  ++VTI+++LPAC    ALE
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +H ++  +GL+  SSV TA+   YAKC  +  A   FD    + K++I WN+MI+A
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA HG   +   ++  M ++ V+PD +TF+GLL+ C ++GL++ G   F +M   +  EP
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             EHYA +V+LLGRAG + EA+EL+  MP +    VWG LL+AC+ H   E+AEL A +L
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +EP+N+GNYVLLSN+YA AG W  V K+R  L+ +G+KK+PGCSWIEI    H F  A
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 572

Query: 693 DQSHPQADAIYTILGILELEI 713
           D+SHPQA  IY  L  L  +I
Sbjct: 573 DKSHPQAKEIYKFLEALPEKI 593



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 219/462 (47%), Gaps = 50/462 (10%)

Query: 7   PACSLQSGHVKFLRFPANQTRPHMTATHS-FSLLNLCENPQHLQQIHARYIILHGLHQNL 65
           P+ +LQ   ++ L  P  Q  PH ++    F  L      +  QQ HA+ I+LHGL  N 
Sbjct: 57  PSLNLQ---LRILLQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQ-IVLHGLQPNA 112

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG---EYEKTLLVYKQM 122
            L++ ++  YA+ G L  +  VF+ I +P+SLLY +I++  ++ G        L  Y +M
Sbjct: 113 FLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARM 172

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD-- 180
               +     T PFV++SC+ L     G  +H Q +++G +    VG +L++ Y+KC   
Sbjct: 173 HFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVI 232

Query: 181 ----------------------GGF--ENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
                                  G+  E E G+ +  F+ ++ R    W ++IS   QNG
Sbjct: 233 GDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNG 292

Query: 213 KSEKSFELFKLMRMEGAEFDSG--TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            +E++  LF  M  +G+E      T++++L +  +  +LE GR +H  A       + SV
Sbjct: 293 FAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSV 352

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            TAL  MY+K  SL +A+  FD ++   K+ + WN MI+AY   G   E++ +   M+R+
Sbjct: 353 QTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRA 412

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR--NGSDYQVSVHNSLIDMYCECEDLN 386
           G + D  T +  +S  S    I+ G   H N +   +  + +V  +  ++D+      L 
Sbjct: 413 GVQPDAVTFMGLLSGCSHSGLIDAGLN-HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLV 471

Query: 387 CARKIFDSVKTKTVVS-WSSMIKGYVTHDQ----SLEALRLF 423
            A+++   +  +   S W +++    +H       L A RLF
Sbjct: 472 EAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLF 513


>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 213/706 (30%), Positives = 363/706 (51%), Gaps = 58/706 (8%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNL 71
           F+    N+  P      +F + N+C+    LQ       +H  Y+I  GL   + ++S+L
Sbjct: 141 FVEMLENEIFPD-----NFVVPNVCKACGALQWSRFGRGVHG-YVIKAGLEDCVFVASSL 194

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
            D Y   G+L  +++VF+ I   N + +  ++    + G  E+ + ++  M  + + P  
Sbjct: 195 ADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTR 254

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
            T    + + + ++    G++ HA  +  G +  + +G +L+ FY K  G  E  + +  
Sbjct: 255 VTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKV-GLIEYAEMVFD 313

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           R F      WN LIS  VQ G  E +  + +LMR+E  ++D  TL  L+ +    ++L+ 
Sbjct: 314 RMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKF 373

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G+ V C  +      D+ + +  + MY+K  S+ DAK +FD   +KD ++WN +++AY Q
Sbjct: 374 GKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQ 433

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           SG   E+L L   M       ++ T    + S+                LRNG       
Sbjct: 434 SGLSGEALRLFYEMQLESVPPNVITWNLIILSL----------------LRNG------- 470

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMK 427
                       ++N A+++F  +++  +    +SW++M+ G V +  S EA+    +M+
Sbjct: 471 ------------EVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQ 518

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCI 486
             G+  +  +I   L A  N+ +L   + +HGY ++ L  +S  S+ T++   YAKCG I
Sbjct: 519 ESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETSLVDMYAKCGDI 578

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
             A  +F  +     ++  +N+MISAYA +G+  +   LY  ++   ++PD +TF  LL+
Sbjct: 579 NKAERVFGSKLY--SELPLYNAMISAYALYGNVKEAIALYRSLEDMGIKPDSVTFTSLLS 636

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC +AG +++   +F  M   +G  P  EHY  MV+LL  AG  ++A  L+++MP+KPDA
Sbjct: 637 ACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKAIRLIEEMPYKPDA 696

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
           R+   L+++C    +TEL E  +  L+  EPEN+GNYV +SN YA  G W+ V KMR  +
Sbjct: 697 RMIQSLVASCNKQHKTELVEYLSRHLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMM 756

Query: 667 RDRGLKKTPGCSWIEIG---KLVHEFWAADQSHPQADAIYTILGIL 709
           + +GLKK PGCSWI+I    + VH F A D +H + D I  IL +L
Sbjct: 757 KAKGLKKKPGCSWIQIKGEEEGVHVFVANDXTHIRNDXIQRILALL 802



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 140/519 (26%), Positives = 266/519 (51%), Gaps = 11/519 (2%)

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           P+S  Y   + +L K GE ++ L +  +M  ++     + Y   ++ C    D  +G++I
Sbjct: 13  PSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNXRIGPEIYGEXLQGCVYERDLSTGKQI 72

Query: 154 HAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           HA+++K G  +   + +   LV FY KCD     E    + + +++ S W ++I +  + 
Sbjct: 73  HARILKNGDFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFS-WAAIIGVKCRI 131

Query: 212 GKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           G  E +   F  M +E   F D+  + N+ ++   L+    GR VH   + +     + V
Sbjct: 132 GLCEGALMGFVEM-LENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFV 190

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            ++L  MY K   L+DA+ +FD++ +++ V WN ++  Y Q+G  +E++ L   M + G 
Sbjct: 191 ASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGV 250

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
                T    +S+ + M  +E GKQ HA  + NG +    +  SL++ YC+   +  A  
Sbjct: 251 EPTRVTVSTCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEM 310

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FD +  K VV+W+ +I GYV      +A+ +   M+LE ++ D VT+  ++ A      
Sbjct: 311 VFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTEN 370

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+  K +  Y ++  L++   + +     YAKCG I  A ++FD      KD+I WN+++
Sbjct: 371 LKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTV--EKDLILWNTLL 428

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +AYA+ G   +  +L+ +M+   V P++IT+  ++ + +  G V E + +F +M+ S G 
Sbjct: 429 AAYAQSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSS-GI 487

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDA 606
            P+   + +M+N + + G  +EA   ++ M     +P+A
Sbjct: 488 SPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNA 526


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/546 (34%), Positives = 291/546 (53%), Gaps = 24/546 (4%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS--GTLINLLRSTVELKSLELGRIVHCV 258
           W   I  A   G    +  LF  MR   A   S   +L   L+S   L    LG  +H +
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 259 AVVSDFCKDLSVNTALLSMYSKL-------------------ASLEDAKMLFDKMSDKDR 299
           A+ S    D     ALL++Y K+                    + E  + +FD+M ++D 
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN ++    + G   E+L  +  M R GFR D FT    +   +   +++ G ++H  
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
             RNG D  V V +SLIDMY  C   + + K+FD++  +  + W+S++ G   +    EA
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L +F  M   GV    VT  +++P C N+ +L   K LH Y +  G      +++++   
Sbjct: 256 LGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDM 315

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KCG I +A  +FD  K+ S D+++W +MI  YA HG   +   L+ +M+  + +P+ I
Sbjct: 316 YCKCGEISIAHCIFD--KMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHI 373

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFL +LTAC +AGLV++G   FK M   YG  P+ EH+A++ + LGRAG +DEA   +  
Sbjct: 374 TFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISK 433

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           M  KP A VW  LL AC++H  T LAE  A+K++ +EP + G++V+LSN+Y+A+G+WN  
Sbjct: 434 MQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEA 493

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIM-EGRR 718
           A +R  +R +G+KK P CSWIE+   +H F A D+SHP  D I   L     ++  EG  
Sbjct: 494 AHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHV 553

Query: 719 ESSEEL 724
            ++E++
Sbjct: 554 PNTEDV 559



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 203/420 (48%), Gaps = 22/420 (5%)

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           L +    A +S  PA  + P  ++SC+ L     G  +HA  ++ G  +     +AL+  
Sbjct: 37  LRMRASAAPRSSVPA--SLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNL 94

Query: 176 YIKCDGGFENEKGM--------------IQRKFKDLKSR----WNSLISLAVQNGKSEKS 217
           Y K    + +  G+              +++ F ++  R    WN+L+    + G+  ++
Sbjct: 95  YCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEA 154

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
               + M  EG   DS TL  +L    E   ++ G  VH  A  + F  D+ V ++L+ M
Sbjct: 155 LGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDM 214

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y+     + +  +FD +  +D ++WN +++   Q+G  +E+L +   M+++G R    T 
Sbjct: 215 YANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTF 274

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + +     + ++ +GKQ+HA V+  G +  V + +SLIDMYC+C +++ A  IFD + +
Sbjct: 275 SSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSS 334

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKY 456
             VVSW++MI GY  H  + EAL LF  M+L   + + +T + +L AC + G ++   KY
Sbjct: 335 PDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKY 394

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
               S   G+        A+  +  + G ++ A     + +I     + W++++ A   H
Sbjct: 395 FKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASV-WSTLLRACRVH 453



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 33/352 (9%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +   + + + T++   ++ G + + L   ++M  +   P   T   V+   +  
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D   G ++H    + GFDS   VG +L++ Y  C            + F +L  R    
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANC-----TRTDYSVKVFDNLPVRDHIL 238

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNSL++   QNG  E++  +F+ M   G      T  +L+     L SL  G+ +H   +
Sbjct: 239 WNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 298

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  ++ ++++L+ MY K   +  A  +FDKMS  D V W  MI  Y   G  +E+L 
Sbjct: 299 CGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALV 358

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN------- 373
           L   M     + +  T +A +++ S           HA ++  G  Y  S+ N       
Sbjct: 359 LFERMELGNAKPNHITFLAVLTACS-----------HAGLVDKGWKYFKSMSNHYGIVPT 407

Query: 374 -----SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQSLEA 419
                +L D      +L+ A      ++ K   S WS++++    H  ++ A
Sbjct: 408 LEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLA 459



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 12/273 (4%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C + +   ++H  +   +G   ++ + S+LID YAN      S +VF+++   + +L+ +
Sbjct: 183 CADVKRGLEVHG-FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNS 241

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +L   ++ G  E+ L ++++M    + P   T+  +I  C  L     G+++HA V+  G
Sbjct: 242 LLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGG 301

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKS 217
           F+    +  +L++ Y KC      E  +    F  + S     W ++I     +G + ++
Sbjct: 302 FEDNVFISSSLIDMYCKC-----GEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREA 356

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLS 276
             LF+ M +  A+ +  T + +L +      ++ G +    ++        L    AL  
Sbjct: 357 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALAD 416

Query: 277 MYSKLASLEDAKMLFDKMSDKDRV-VWNIMISA 308
              +   L++A     KM  K    VW+ ++ A
Sbjct: 417 TLGRAGELDEAYNFISKMQIKPTASVWSTLLRA 449


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 302/511 (59%), Gaps = 10/511 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI-VHCVA 259
           WN+++     + + +     +  +R  G   D  T   LL++  +L++    +   H V 
Sbjct: 72  WNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHIVK 131

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
              DF  D  V  +L+S ++    ++ ++ LF + + KD V W  +I+   ++G   E+L
Sbjct: 132 FGLDF--DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEAL 189

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD-YQVSVHNSLIDM 378
           E  + M  SG   D  T ++ + + + ++++ +G+ +H   + +G   + V V ++L+DM
Sbjct: 190 ECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDM 249

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C   + A K+F+ + T+ +VSW ++I GYV  ++  EAL++F EM +EG+E +  T+
Sbjct: 250 YSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTV 309

Query: 439 INILPACVNIGALEHVKYLHGY--SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            + L AC  +G+L+  ++LH Y    KLGLNS   + TA+   Y+KCGC++ A  +F  E
Sbjct: 310 TSALTACAQLGSLDQGRWLHEYVDRSKLGLNS--KLGTALVDMYSKCGCVDEALLVF--E 365

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K+ +KD+  W +MI+  A  GD      L++QM +S V+P+ +TFLG+L+AC + GLV+E
Sbjct: 366 KLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDE 425

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G  +F+ M   Y  EP+ +HY  MV+LLGRAG ++EA + ++ MP +P   VWG L S C
Sbjct: 426 GLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGC 485

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
            +H   EL E     LI ++P ++G Y+LL+N+Y+   KW   A +R  ++ +G+ K+P 
Sbjct: 486 MIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPA 545

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           CSWIE+  ++HEF A D+SH ++  +Y +LG
Sbjct: 546 CSWIEVNGVIHEFIAFDKSHIESINVYMMLG 576



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 211/412 (51%), Gaps = 6/412 (1%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C    HL Q  +  I     H    LS  L  +  +LG   L   +F+ + +P   L+ T
Sbjct: 18  CGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATKDLGYTLL---LFDRLATPYIFLWNT 74

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           I+++ S   + +  L+ Y ++    + P   T+P ++++ S L +  +  + +A +VK G
Sbjct: 75  IVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-ENPFQFYAHIVKFG 133

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
            D    V ++LV  +  C     + +  I+   KD+ S W +LI+  ++NG++ ++ E F
Sbjct: 134 LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVS-WTALINGCLRNGRAVEALECF 192

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSMYSK 280
             MR  G E D  T++++L +   L+ +  GR VH   V S     D+ V +AL+ MYSK
Sbjct: 193 VEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK 252

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
               +DA  +F++M  ++ V W  +I+ Y Q    KE+L++   M+  G   +  T  +A
Sbjct: 253 CGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSA 312

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +++ + + +++ G+ +H  V R+       +  +L+DMY +C  ++ A  +F+ +  K V
Sbjct: 313 LTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDV 372

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             W++MI G      +L +L LFS+M    V+ + VT + +L AC + G ++
Sbjct: 373 YPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVD 424



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 180/335 (53%), Gaps = 6/335 (1%)

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +LFD+++     +WN ++ ++  S  P+  L     +   G   D  T    + + S ++
Sbjct: 59  LLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N E   Q +A++++ G D+   V NSL+  +  C  ++C+R++F     K VVSW+++I 
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G + + +++EAL  F EM+  GVEVD VT++++L A   +  +   +++HG+ ++ G   
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 469 LSS-VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
               V +A+   Y+KCG  + A ++F+E  + ++++++W ++I+ Y +   + +  K++ 
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNE--MPTRNLVSWGALIAGYVQCNRYKEALKVFQ 295

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M    + P+  T    LTAC   G +++GR + + +  S     S+   A +V++  + 
Sbjct: 296 EMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTA-LVDMYSKC 354

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
           G +DEA  + + +P K D   W  +++   M  + 
Sbjct: 355 GCVDEALLVFEKLPAK-DVYPWTAMINGLAMRGDA 388



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 115/244 (47%), Gaps = 26/244 (10%)

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           +DL     +FD + T  +  W+++++ +    Q    L  +S ++  GV  D  T   +L
Sbjct: 52  KDLGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLL 111

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            A   +   E+    + + +K GL+  + V  ++  ++A CG ++ +  LF E     KD
Sbjct: 112 KAFSKLRN-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA--KKD 168

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-----------VNA 551
           +++W ++I+   ++G   +  + + +M+ S V  D +T + +L A            V+ 
Sbjct: 169 VVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHG 228

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
             VE GR+I+     S           ++V++  + G+ D+A ++  +MP + +   WG 
Sbjct: 229 FYVESGRVIWDVYVGS-----------ALVDMYSKCGYCDDAVKVFNEMPTR-NLVSWGA 276

Query: 612 LLSA 615
           L++ 
Sbjct: 277 LIAG 280



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 124/271 (45%), Gaps = 21/271 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +H  Y+    +  ++ + S L+D Y+  G    + +VFN + + N + +G ++    +
Sbjct: 224 RWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQ 283

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV--VKLGFDSFD 166
              Y++ L V+++M ++ + P + T    + +C+ L     G  +H  V   KLG +S  
Sbjct: 284 CNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS-- 341

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            +G ALV+ Y KC  G  +E  ++  K   KD+   W ++I+     G +  S  LF  M
Sbjct: 342 KLGTALVDMYSKC--GCVDEALLVFEKLPAKDVYP-WTAMINGLAMRGDALSSLNLFSQM 398

Query: 225 RMEGAEFDSGTLINLLRSTVEL----KSLELGRIVHCVAVVSDFCKDLSVN--TALLSMY 278
                + +  T + +L +        + LEL R++ C     D+  + +V+    ++ + 
Sbjct: 399 IRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC-----DYRLEPNVDHYGCMVDLL 453

Query: 279 SKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
            +   LE+A    + M  +    VW  + S 
Sbjct: 454 GRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 212/682 (31%), Positives = 360/682 (52%), Gaps = 27/682 (3%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q L   H  Y I  G   ++ +S+ ++DSY   G L  +  +F+ +   +S+ + T++  
Sbjct: 17  QKLSLTHC-YAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISG 75

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFD 163
            +  G+ E    ++  M         D Y F  +++  + +  F  GE++H  V+K G++
Sbjct: 76  YTSCGKLEDAWCLFTCMKRSG--SDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYE 133

Query: 164 SFDDVGDALVEFYIKCD---GGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEK 216
               VG +LV+ Y KC+     FE         FK++       WN+LI+  VQ    + 
Sbjct: 134 CNVYVGSSLVDMYAKCERVEDAFE--------AFKEISEPNSVSWNALIAGFVQVRDIKT 185

Query: 217 SFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           +F L  LM M+ A   D+GT   LL    +     L + VH   +      ++++  A++
Sbjct: 186 AFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMI 245

Query: 276 SMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           S Y+   S+ DAK +FD +   KD + WN MI+ + +    + + EL + M R     D+
Sbjct: 246 SSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDI 305

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE--CEDLNCARKIF 392
           +T    +S+ S  ++  +GK +H  V++ G +   S  N+LI MY +     +  A  +F
Sbjct: 306 YTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLF 365

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +S+K+K ++SW+S+I G+     S +A++ FS ++   ++VD      +L +C ++  L+
Sbjct: 366 ESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQ 425

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMIS 511
             + +H  + K G  S   V +++ + Y+KCG IE A + F  ++I SK   + WN+MI 
Sbjct: 426 LGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCF--QQISSKHSTVAWNAMIL 483

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            YA+HG       L++QM   +V+ D +TF  +LTAC + GL++EG  +   M+  Y  +
Sbjct: 484 GYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQ 543

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
           P  EHYA+ V+LLGRAG +++A+EL++ MP  PD  V    L  C+   E E+A   A  
Sbjct: 544 PRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANH 603

Query: 632 LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWA 691
           L+ +EPE+   YV LS++Y+   KW   A ++  +++RG+KK PG SWIEI   V  F A
Sbjct: 604 LLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNA 663

Query: 692 ADQSHPQADAIYTILGILELEI 713
            D+S+P    IY ++  L  E+
Sbjct: 664 EDRSNPLCQDIYMMIKDLTQEM 685


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 280/465 (60%), Gaps = 3/465 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            LL+     K L  GRIVH   + S F  DL +N  LL+MY+K  SLE+A+ +FDKM ++
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +IS Y Q   P ++L L   M+R GF  + FT  + + + +  +    G Q+H
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLH 175

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              ++ G D  V V ++L+D+Y     ++ A+ +FD+++++  VSW+++I G+     + 
Sbjct: 176 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTE 235

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +AL LF  M  EG      +  ++  AC + G LE  K++H Y +K G   ++     + 
Sbjct: 236 KALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 295

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G I  A ++FD  ++  +D+++WNS+++AYA+HG  ++    + +M++  +RP+
Sbjct: 296 DMYAKSGSIHDARKIFD--RLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPN 353

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            I+FL +LTAC ++GL++EG   ++ MK+  G      HY ++V+LLGRAG ++ A   +
Sbjct: 354 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFI 412

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++MP +P A +W  LL+AC+MH  TEL    AE +  ++P++ G +V+L NIYA+ G+WN
Sbjct: 413 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 472

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
             A++R  +++ G+KK P CSW+EI   +H F A D+ HPQ + I
Sbjct: 473 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 517



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 207/437 (47%), Gaps = 9/437 (2%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +++ C+       G  +H  +++  F     + + L+  Y KC G  E  + +  + 
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKC-GSLEEARKVFDKM 112

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +     W +LIS   Q+ +   +  LF  M   G   +  TL +++++    +    G 
Sbjct: 113 PERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGH 172

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H   V   F  ++ V +ALL +Y++   ++DA+++FD +  ++ V WN +I+ + +  
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRC 232

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             +++LEL   M+R GFR   F+  +   + S+   +E GK +HA ++++G        N
Sbjct: 233 GTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 292

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +L+DMY +   ++ ARKIFD +  + VVSW+S++  Y  H    EA+  F EM+  G+  
Sbjct: 293 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRP 352

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           + ++ +++L AC + G L+   + +    K G+   +     I     + G +  A    
Sbjct: 353 NEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFI 412

Query: 494 DEEKIDSKDIITWNSMISAYAKHGD---WSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           +E  I+    I W ++++A   H +    +   +   ++   D  P +I    L     +
Sbjct: 413 EEMPIEPTAAI-WKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI----LYNIYAS 467

Query: 551 AGLVEEGRIIFKEMKES 567
            G   +   + K+MKES
Sbjct: 468 GGRWNDAARVRKKMKES 484



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 196/409 (47%), Gaps = 17/409 (4%)

Query: 19  LRFPANQTR-PHMTATHSF--SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLI 72
           L+FP+N     ++     F  +LL  C   + L Q   +H  ++I      +L++++ L+
Sbjct: 35  LKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHG-HLIQSIFRHDLVMNNTLL 93

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           + YA  G L  +++VF+ +   + + + T++   S+       L+++ QM      P E 
Sbjct: 94  NMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEF 153

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T   VI++ +       G ++H   VK GFDS   VG AL++ Y +   G  ++  ++  
Sbjct: 154 TLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRY--GLMDDAQLV-- 209

Query: 193 KFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
            F  L+SR    WN+LI+   +   +EK+ ELF+ M  EG      +  +L  +      
Sbjct: 210 -FDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGF 268

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           LE G+ VH   + S           LL MY+K  S+ DA+ +FD+++ +D V WN +++A
Sbjct: 269 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 328

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y Q GF  E++     M R G R +  + ++ +++ S    ++ G   +  + ++G   +
Sbjct: 329 YAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLE 388

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTHDQS 416
              + +++D+     DLN A +  + +  + T   W +++     H  +
Sbjct: 389 AWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNT 437


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 288/526 (54%), Gaps = 4/526 (0%)

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
           +    L + WN+ +    +  +  ++  L+  M   G   ++ T    L+S   L    L
Sbjct: 8   KSMNALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPIL 67

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK--MSDKDRVVWNIMISAY 309
           G   H          +  V T L+SMY K + +++A+ +F++   S K  V +N ++S Y
Sbjct: 68  GSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGY 127

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
             +    E++ L   M   G   +  T +  + +  +  N+E G  +H + L+ G D  V
Sbjct: 128 VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 187

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
           SV N  I MY +C  +N A+K+FD +  K ++SW++M+ GY  +  +   L L+  M + 
Sbjct: 188 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 247

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           GV  D VT++ +L +C N+GA      +       G  S   +N A+   YA+CG +  A
Sbjct: 248 GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKA 307

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             +FD   +  + +++W ++I  Y  HG      +L+ +M +S + PD   F+ +L+AC 
Sbjct: 308 QAVFD--GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACS 365

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGL ++G   FK MK +Y  EP  EHY+ MV+LLGRAG + EA+ L++ MP KPD  VW
Sbjct: 366 HAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVW 425

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LL ACK+H   ELAEL  E++I +EPEN G YVLLSNIY+ A    GV ++R  ++++
Sbjct: 426 GALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEK 485

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            LKK PGCS++E+   VH F   D++H Q+D IY +L  LE  IM+
Sbjct: 486 KLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQ 531



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 219/438 (50%), Gaps = 23/438 (5%)

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           N++++P    + T L+ L+K  ++ + L +Y QM      P   T+PF ++SC+ L   I
Sbjct: 11  NALSTP----WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPI 66

Query: 149 SGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGF-ENEKGMIQRKF--KDLKSRWNS 203
            G + H Q+ K+G  F+ F   G  L+  Y  C G   +N + + +  F  + L   +N+
Sbjct: 67  LGSQFHGQITKVGCVFEPFVQTG--LISMY--CKGSLVDNARKVFEENFHSRKLTVCYNA 122

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           L+S  V N K  ++  LF+ M  EG   +S TL+ L+ + V   +LELG  +HC  +   
Sbjct: 123 LVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG 182

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D+SV    ++MY K  S+  A+ LFD+M  K  + WN M+S Y Q+G     LEL  
Sbjct: 183 FDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYR 242

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M  +G   D  T +  +SS + +     G ++   +  +G      ++N+LI+MY  C 
Sbjct: 243 NMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCG 302

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           +L  A+ +FD +  +T+VSW+++I GY  H     A++LF EM   G+E D    + +L 
Sbjct: 303 NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 362

Query: 444 ACVNIG----ALEHVKYL-HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           AC + G     LE+ K +   Y ++ G    S +   +     + G ++ A  L +   I
Sbjct: 363 ACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLL----GRAGRLKEAQTLIESMPI 418

Query: 499 DSKDIITWNSMISAYAKH 516
              D   W +++ A   H
Sbjct: 419 KP-DGAVWGALLGACKIH 435



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 123/293 (41%), Gaps = 28/293 (9%)

Query: 33  THSFSLLNL---CENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQ 86
            +S +LL L   C +P +L+    +H    + +G   ++ + +  I  Y   G ++ +Q+
Sbjct: 150 VNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFITMYMKCGSVNYAQK 208

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           +F+ +     + +  ++   ++ G     L +Y+ M +  ++P   T   V+ SC+ L  
Sbjct: 209 LFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGA 268

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
              G ++  ++   GF S   + +AL+  Y +C G     + +     +     W ++I 
Sbjct: 269 QSVGHEVEFKIQASGFTSNPFLNNALINMYARC-GNLTKAQAVFDGMPERTLVSWTAIIG 327

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               +G  E + +LFK M   G E D    + +L +       + G          ++ K
Sbjct: 328 GYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL---------EYFK 378

Query: 267 DLSVN----------TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
            +  N          + ++ +  +   L++A+ L + M  K D  VW  ++ A
Sbjct: 379 MMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 211/640 (32%), Positives = 336/640 (52%), Gaps = 22/640 (3%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VI 138
           L+ ++++F+ I   ++  + ++L      G +     + + M  + +  A +T+     +
Sbjct: 51  LAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGL--AANTFALGSAL 108

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK---GMIQRKFK 195
           RS + +     G ++H+  VK G         AL+  Y KC    +  +   GM +R   
Sbjct: 109 RSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERN-- 166

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                WN+L++  V++GK   + +LF  M  EG   D  T   LL + V   +  L   +
Sbjct: 167 --TVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALL-TVVNDSTCFLMHQL 223

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQSGF 314
           H   V       L V  A ++ YS+  +L +++ +FD++ D+ D + WN M+ AY   G 
Sbjct: 224 HGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGM 283

Query: 315 PKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             E++     M+R SG + D+++  + +S+ +  ++   G  +H  V +NG +    V N
Sbjct: 284 EHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRD-HGGTVIHGLVSKNGFEGVTHVCN 342

Query: 374 SLIDMYCECEDLNC----ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
           +LI MY    + NC    A K FDS+  K  VSW+SM+ GY  H  S +ALR F  M+ E
Sbjct: 343 ALIAMYTRFSE-NCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSE 401

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            +  D       L +C ++  L   + +HG  ++ G  S + V++++   Y+K G ++ A
Sbjct: 402 NITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDA 461

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            + F+E   D    + WNSM+  YA+HG       L+ QM +  V  D ITF+GL+TAC 
Sbjct: 462 MKSFEEA--DKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACS 519

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           +AGLV+EG  I   M+  YG     EHYA  ++L GRAG +D+A+EL+  MPF+PDA VW
Sbjct: 520 HAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVW 579

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
             LL AC++H   ELA   A  L+  EP     YVLLSN+Y+  G W+  A ++  ++++
Sbjct: 580 MTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMWSDRAIVQKEMKNK 639

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           GL K PG SWIE+   VH F A D SHP+ D IY +L +L
Sbjct: 640 GLSKVPGWSWIEVKNEVHSFNAEDGSHPRMDEIYEMLSLL 679



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 170/355 (47%), Gaps = 18/355 (5%)

Query: 274 LLSMYS-KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           LL+ YS     L  A+ LFD++   D   WN +++A+   G    +  LL  M   G  A
Sbjct: 40  LLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGLAA 99

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           + F   +A+ S + M     G Q+H+  ++ G    V    +L+ MY +C     A ++F
Sbjct: 100 NTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLF 159

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D +  +  VSW++++ GYV   +   A++LF EM+ EG   D  T   +L   VN     
Sbjct: 160 DGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALL-TVVNDSTCF 218

Query: 453 HVKYLHG----YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            +  LHG    Y   LGL  L++  TA    Y++CG +  +  +FDE   D  D+I+WN+
Sbjct: 219 LMHQLHGKIVKYGSALGLIVLNAAITA----YSQCGALANSRRIFDEIG-DRSDLISWNA 273

Query: 509 MISAYAKHGDWSQCFKLY-TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           M+ AYA HG   +  + + + M+ S V+PD+ +F  +++AC  A   + G  +   +   
Sbjct: 274 MLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISAC--AEHRDHGGTVIHGLVSK 331

Query: 568 YGYEPSQEHYASMVNLLGRAGH---MDEARELVKDMPFKPDARVWGPLLSACKMH 619
            G+E       +++ +  R      M++A +    +  K D   W  +L+    H
Sbjct: 332 NGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLK-DTVSWNSMLTGYSQH 385


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 280/501 (55%), Gaps = 11/501 (2%)

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           SL + N + E S   F  ++    +F    L+N        ++L   R VH  A V    
Sbjct: 41  SLNLHNREEESS--KFHFLQRLNPKFYISALVNC-------RNLTQVRQVHAQASVHGML 91

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           +++ V   L+  YS   +L+DA  LFD M  +D V W++M+  + + G           +
Sbjct: 92  ENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFREL 151

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           +R G R D +T    + +   +KN++ G+ +H  V + G D    V  +L+DMY +C ++
Sbjct: 152 IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREI 211

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             AR +FD ++ + +V+W+ MI GY    ++ E+L LF +M+ EGV  D V ++ ++ AC
Sbjct: 212 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 271

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             +GA+   + +  Y  +        + TA+   YAKCGC+E A E+FD  +++ K++I+
Sbjct: 272 AKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD--RMEEKNVIS 329

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W++MI+AY  HG   +   L+  M  S + PD IT   LL AC +AGLVEEG   F  M 
Sbjct: 330 WSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMW 389

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           E Y      +HY  +V+LLGRAG +DEA +L+K M  + D  +WG  L AC+ H +  LA
Sbjct: 390 EDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLA 449

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           E  A  L+ ++ +N G+YVLLSNIYA AG+W  VAK+R  +  R LKKTPG +WIE+   
Sbjct: 450 EKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNK 509

Query: 686 VHEFWAADQSHPQADAIYTIL 706
            H+F   D +HP++  IY +L
Sbjct: 510 SHQFSVGDTTHPRSKEIYEML 530



 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 261/454 (57%), Gaps = 2/454 (0%)

Query: 253  RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
            R VH  A V    ++L V   L+  YS   +L+DA  LFD M  +D V W++M+  + + 
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 814

Query: 313  GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
            G           ++R G R D +T    + +   +KN++ G+ +H  V + G D    V 
Sbjct: 815  GDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVC 874

Query: 373  NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
             +L+DMY +C ++  AR +FD +  + +V+W+ MI GY     + E+L LF +M+ EGV 
Sbjct: 875  AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934

Query: 433  VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
             D V ++ ++ AC  +GA+   + +  Y  +        + TA+   +AKCGC+E A E+
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 994

Query: 493  FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
            FD  +++ K++I+W++MI+AY  HG   +   L+  M +S + P+ IT + LL AC +AG
Sbjct: 995  FD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAG 1052

Query: 553  LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            LVEEG   F  M E Y      +HY  +V+LLGRAG +DEA +L+  M  + D  +WG  
Sbjct: 1053 LVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAF 1112

Query: 613  LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
            L AC+ H +  LAE  A  L+ ++P+N G+Y+LLSNIYA AG+W  VAK+R  +  R LK
Sbjct: 1113 LGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLK 1172

Query: 673  KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            K PG +WIE+    H+F   D +HP++  IY +L
Sbjct: 1173 KIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEML 1206



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 175/374 (46%), Gaps = 13/374 (3%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYI---KCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            ++HAQ    G      V + L+ FY      D  +    GM  R        W+ ++  
Sbjct: 79  RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRD----SVSWSVMVGG 134

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             + G     F  F+ +   GA  D+ TL  ++R+  +LK+L++GR++H   +V  F  D
Sbjct: 135 FAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH--HIVYKFGLD 192

Query: 268 LS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           L   V  AL+ MY K   +EDA+ LFDKM ++D V W +MI  Y + G   ESL L   M
Sbjct: 193 LDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 252

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G   D    +  V + + +  +   + +   + R      V +  ++IDMY +C  +
Sbjct: 253 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV 312

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             AR+IFD ++ K V+SWS+MI  Y  H Q  +AL LF  M   G+  D +T+ ++L AC
Sbjct: 313 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYAC 372

Query: 446 VNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
            + G +E  +++         + +     T +     + G ++ A +L     I+ KD  
Sbjct: 373 SHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIE-KDEG 431

Query: 505 TWNSMISAYAKHGD 518
            W + + A   H D
Sbjct: 432 LWGAFLGACRTHKD 445



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 151/307 (49%), Gaps = 11/307 (3%)

Query: 151  EKIHAQVVKLGFDSFDDVGDALVEFYI---KCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
             ++H Q    G      V + LV FY      D  +    GM  R        W+ ++  
Sbjct: 755  RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRD----SVSWSVMVGG 810

Query: 208  AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
              + G     F  F+ +   GA  D+ TL  ++R+  +LK+L++GR++H   +V  F  D
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH--HIVYKFGLD 868

Query: 268  LS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            L   V  AL+ MY K   +EDA+ LFDKM ++D V W +MI  Y + G   ESL L   M
Sbjct: 869  LDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 326  VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
               G   D    +  V + + +  +   + +   + R      V +  ++IDM+ +C  +
Sbjct: 929  REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 988

Query: 386  NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
              AR+IFD ++ K V+SWS+MI  Y  H Q  +AL LF  M   G+  + +T++++L AC
Sbjct: 989  ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 1048

Query: 446  VNIGALE 452
             + G +E
Sbjct: 1049 SHAGLVE 1055



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 192/380 (50%), Gaps = 7/380 (1%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L+N C N   ++Q+HA+  + HG+ +N+++++ LI  Y+    L  +  +F+ +   +S
Sbjct: 68  ALVN-CRNLTQVRQVHAQASV-HGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           + +  ++   +K G+Y      ++++      P   T PFVIR+C  L +   G  IH  
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSE 215
           V K G D    V  ALV+ Y+KC    E+ + +  + + +DL + W  +I    + GK+ 
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCR-EIEDARFLFDKMQERDLVT-WTVMIGGYAECGKAN 243

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           +S  LF+ MR EG   D   ++ ++ +  +L ++   RI+        F  D+ + TA++
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI 303

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K   +E A+ +FD+M +K+ + W+ MI+AY   G  +++L+L   M+ SG   D  
Sbjct: 304 DMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKI 363

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           T  + + + S    +E G +  +++  + S    V  +  ++D+      L+ A K+  S
Sbjct: 364 TLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKS 423

Query: 395 VKT-KTVVSWSSMIKGYVTH 413
           +   K    W + +    TH
Sbjct: 424 MTIEKDEGLWGAFLGACRTH 443



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 184/379 (48%), Gaps = 12/379 (3%)

Query: 41   LCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG 100
            L  N   ++Q+H +  + HG+ QNLI+++ L+  Y+    L  +  +F+ +   +S+ + 
Sbjct: 747  LPTNLTQVRQVHXQASV-HGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWS 805

Query: 101  TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
             ++   +K G+Y      ++++      P   T PFVIR+C  L +   G  IH  V K 
Sbjct: 806  VMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 865

Query: 161  GFDSFDDVGDALVEFYIKC----DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
            G D    V  ALV+ Y KC    D  F  +K M +R   DL + W  +I    + G + +
Sbjct: 866  GLDLDHFVCAALVDMYGKCREIEDARFLFDK-MXER---DLVT-WTVMIGGYAECGNANE 920

Query: 217  SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
            S  LF  MR EG   D   ++ ++ +  +L ++   R +        F  D+ + TA++ 
Sbjct: 921  SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 980

Query: 277  MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
            M++K   +E A+ +FD+M +K+ + W+ MI+AY   G  +++L+L   M+RSG   +  T
Sbjct: 981  MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 1040

Query: 337  AIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
             ++ + + S    +E G +  + +  + S    V  +  ++D+      L+ A K+  S+
Sbjct: 1041 LVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100

Query: 396  KT-KTVVSWSSMIKGYVTH 413
               K    W + +    TH
Sbjct: 1101 TXEKDEGLWGAFLGACRTH 1119



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 130/277 (46%), Gaps = 4/277 (1%)

Query: 349  NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            N+   +Q+H     +G    + V N L+  Y     L+ A  +FD +  +  VSWS M+ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 409  GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
            G+      +     F E+   G   D  T+  ++ AC ++  L+  + +H    K GL+ 
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 469  LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
               V  A+   Y KC  IE A  LFD  K+  +D++TW  MI  YA+ G+ ++   L+ +
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFD--KMXERDLVTWTVMIGGYAECGNANESLVLFDK 927

Query: 529  MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
            M++  V PD +  + ++ AC   G + + R I  +  +   ++       +M+++  + G
Sbjct: 928  MREEGVVPDKVAMVTVVFACAKLGAMHKARTI-DDYIQRKKFQLDVILGTAMIDMHAKCG 986

Query: 589  HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             ++ ARE+   M  K +   W  +++A   H +   A
Sbjct: 987  CVESAREIFDRMEEK-NVISWSAMIAAYGYHGQGRKA 1022


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/620 (32%), Positives = 319/620 (51%), Gaps = 73/620 (11%)

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           +YK M    +     TYP +I++CS        +++H  V+KLGFDS   V + L+  + 
Sbjct: 200 LYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFS 259

Query: 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237
            C    +  +   +    D  S WNS+++  ++ G  E++  ++  M  E +   S ++I
Sbjct: 260 VCSNMTDACRVFNESSVLDSVS-WNSILAGYIEIGNVEEAKHIYHQMP-ERSIIASNSMI 317

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            L                    +V + CK                       LFD+M +K
Sbjct: 318 VLFGMR---------------GLVVEACK-----------------------LFDEMLEK 339

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W+ +I+ + Q+   +E++   + M + G   D   A++A+S+ + +  +  GK +H
Sbjct: 340 DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIH 399

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK--------------------------- 390
           +  L+ G++  +++ N+LI MY +C D+  ARK                           
Sbjct: 400 SLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVD 459

Query: 391 ----IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
               IFDS+  K VVSWSSMI GY  +D   E L LF EM++ G + D  T+++++ AC 
Sbjct: 460 NAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACA 519

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            + ALE  K++H Y  + GL     + T +   Y KCGC+E A E+F    +  K I TW
Sbjct: 520 RLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVF--YGMIEKGISTW 577

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N++I   A +G       +++ MK+  V P+ ITF+G+L AC + GLV+EG+  F  M  
Sbjct: 578 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIH 637

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +  +P+ +HY  MV+LLGRAG + EA EL+  MP  PD   WG LL ACK H ++E+  
Sbjct: 638 DHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGR 697

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
               KLI ++P++ G +VLLSNIYA+ GKW+ V ++R  +    + K PGCS IE   ++
Sbjct: 698 RVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVI 757

Query: 687 HEFWAADQSHPQADAIYTIL 706
           HEF A D++HP  DAI  +L
Sbjct: 758 HEFLAGDKTHPDMDAIEDML 777



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 170/413 (41%), Gaps = 105/413 (25%)

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW-GKQMHANVLRNGSD 366
           AY Q+  P  +  L   M+ +   AD +T    + + S  ++ EW  KQ+H +VL+ G D
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRS-EWEAKQVHNHVLKLGFD 245

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT-----------HDQ 415
             V V N+LI+ +  C ++  A ++F+       VSW+S++ GY+            H  
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 416 S--------------------LEALRLFSEMKLEGVEVDFVTIINILPAC---------- 445
                                +EA +LF EM    +E D VT  + L AC          
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEM----LEKDMVT-WSALIACFQQNEMYEEA 360

Query: 446 -----------------VNIGALEHVKYLHGYSMKLGLNSLS---------SVNTAIFIS 479
                            V + AL     L   +M   ++SLS         ++  A+   
Sbjct: 361 IRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYM 420

Query: 480 YAKCGCIEMAGELFDE-----------------------------EKIDSKDIITWNSMI 510
           Y+KCG I +A +LFDE                             + +  KD+++W+SMI
Sbjct: 421 YSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMI 480

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           S YA++  + +   L+ +M+ S  +PD  T + +++AC     +E+G+ +   +K + G 
Sbjct: 481 SGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN-GL 539

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
             +     +++++  + G ++ A E+   M  +     W  L+    M+   E
Sbjct: 540 TINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVE 591



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/396 (19%), Positives = 172/396 (43%), Gaps = 32/396 (8%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           A++I      +++I S+++I  +   GL+  + ++F+ +   + + +  ++    +   Y
Sbjct: 298 AKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMY 357

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           E+ +  +  M    +   E      + +C+ LL    G+ IH+  +K+G +S+ ++ +AL
Sbjct: 358 EEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNAL 417

Query: 173 VEFYIKCD------------------------GGF------ENEKGMIQRKFKDLKSRWN 202
           +  Y KC                          G+      +N K +     +     W+
Sbjct: 418 IYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWS 477

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           S+IS   QN   +++  LF+ M+M G + D  TL++++ +   L +LE G+ VH     +
Sbjct: 478 SMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN 537

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               ++ + T L+ MY K   +E A  +F  M +K    WN +I     +G  + SL++ 
Sbjct: 538 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 597

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCE 381
             M +     +  T +  + +   M  ++ G+    +++ +      V  +  ++D+   
Sbjct: 598 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 657

Query: 382 CEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQS 416
              L  A ++ + +  T  V +W +++     H  S
Sbjct: 658 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 693



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
           + Y+  +    A  L+  M    +  D  T   ++ AC    +    K +H + +KLG +
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S   V   +   ++ C  +  A  +F+E  +   D ++WNS+++ Y + G+  +   +Y 
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSV--LDSVSWNSILAGYIEIGNVEEAKHIYH 303

Query: 528 QMKQSDV--RPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           QM +  +     +I   G+       GLV E   +F EM E
Sbjct: 304 QMPERSIIASNSMIVLFGM------RGLVVEACKLFDEMLE 338



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+++ C     L+Q   +HA YI  +GL  N+IL + LID Y   G +  + +VF  +  
Sbjct: 513 SVISACARLAALEQGKWVHA-YIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIE 571

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
                +  ++  L+  G  E +L ++  M    + P E T+  V+ +C
Sbjct: 572 KGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGAC 619


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/664 (29%), Positives = 348/664 (52%), Gaps = 4/664 (0%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           A  +I+ GL   + ++++LI  + NLG +  ++++F+ +   +++ +  ++   S  G  
Sbjct: 168 ASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGIC 227

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            K  LV+  M    + P   T   ++  C+    F  G  IH+  ++   DS   V +AL
Sbjct: 228 SKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINAL 287

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           V  Y       + E        +DL S WN++IS  VQN  S  + +    +       +
Sbjct: 288 VNMYSAAGKLSDAEFLFWNMSRRDLIS-WNTMISSYVQNCNSTDALKTLGQLFHTNESPN 346

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T  + L +     +L  G++VH + +     ++L V  +L++MY K  S+EDA+ +F 
Sbjct: 347 HLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ 406

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE- 351
            M   D V +N++I  Y       +++++   M  +G + +  T I    S ++  ++  
Sbjct: 407 SMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHN 466

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +G+ +HA ++R G      V NSLI MY +C +L  +  IF+S+  K +VSW+++I   V
Sbjct: 467 YGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANV 526

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 EAL+LF +M+  G ++D V +   L +C ++ +LE    LHG  MK GL+S S 
Sbjct: 527 QLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSY 586

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  A    Y KCG ++   ++  ++ I  +    WN++IS YAK+G + +  + + QM  
Sbjct: 587 VVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ--CWNTLISGYAKYGYFKEAEETFKQMVA 644

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           +  +PD +TF+ LL+AC +AGLV++G   +  M  S+G  P  +H   +V+LLGR G   
Sbjct: 645 TGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFA 704

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EA + +++MP  P+  +W  LLS+ + H   E+   TA+KL+ ++P +   YVLLSN+YA
Sbjct: 705 EAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYA 764

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
              +W  V K+R+ ++   + K P CSW+++   V  F   D+ H  A+ IY  L  + L
Sbjct: 765 TNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLL 824

Query: 712 EIME 715
           ++ E
Sbjct: 825 KLRE 828



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/604 (26%), Positives = 303/604 (50%), Gaps = 11/604 (1%)

Query: 37  SLLNLCENPQHLQQIH---ARYIILH--GLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
           SL+  CE     + I    A + + H  GL  N+ + + L+  Y + G++S +Q++F  +
Sbjct: 46  SLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEM 105

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              N + +  ++  LS  G  E+ L  Y+QM    +    + +  V+  C  L + + G 
Sbjct: 106 PERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGL 165

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++ +QV+  G  +   V ++L+  +       + EK   + +  D  S WN++IS+    
Sbjct: 166 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTIS-WNAMISMYSHQ 224

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   K F +F  MR  G   D+ TL +L+           G  +H + + S     ++V 
Sbjct: 225 GICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVI 284

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL++MYS    L DA+ LF  MS +D + WN MIS+Y Q+    ++L+ L  +  +   
Sbjct: 285 NALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNES 344

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T  +A+ + S+   +  GK +HA VL+      + V NSLI MY +C  +  A K+
Sbjct: 345 PNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKV 404

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F S+ T  +VS++ +I GY   +   +A+++FS M+  G++ +++T+INI  +  +   L
Sbjct: 405 FQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDL 464

Query: 452 EHV-KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
            +  + LH Y ++ G  S   V  ++   YAKCG +E +  +F+   I +K+I++WN++I
Sbjct: 465 HNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN--SITNKNIVSWNAII 522

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +A  + G   +  KL+  M+ +  + D +     L++C +   +EEG +    +    G 
Sbjct: 523 AANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEG-MQLHGLGMKSGL 581

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +       + +++ G+ G MDE  ++V D   +P  + W  L+S    +   + AE T +
Sbjct: 582 DSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ-QCWNTLISGYAKYGYFKEAEETFK 640

Query: 631 KLIS 634
           ++++
Sbjct: 641 QMVA 644



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 200/406 (49%), Gaps = 6/406 (1%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIV 255
           S W + +S  V+ G+   +FE+ + MR  G   + F   +L+         + +  G  +
Sbjct: 7   STWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAI 66

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H +   +    ++ + TALL +Y     + DA+ LF +M +++ V W  ++ A   +G+ 
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYL 126

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+L     M R G   +       VS   +++N   G Q+ + V+ +G   QVSV NSL
Sbjct: 127 EEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSL 186

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           I M+     ++ A K+FD ++    +SW++MI  Y       +   +FS+M+  G+  D 
Sbjct: 187 ITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDA 246

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+ +++  C +     H   +H   ++  L+S  +V  A+   Y+  G +  A  LF  
Sbjct: 247 TTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-- 304

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +  +D+I+WN+MIS+Y ++ + +   K   Q+  ++  P+ +TF   L AC + G + 
Sbjct: 305 WNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALI 364

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+++   + +    + +     S++ + G+   M++A ++ + MP
Sbjct: 365 DGKMVHAIVLQ-LSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 409


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 294/567 (51%), Gaps = 75/567 (13%)

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           S  L+  +R      D   L + L+S     +  L R +H  AVVS   +D  V ++LL 
Sbjct: 4   SNSLYHFLRHVSFPPDPHLLPSALKSC---PAQPLARALHAAAVVSGLAEDPFVASSLLH 60

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV---------- 326
            Y +L +   A+ +FD+M +K+ V W+ +I+ Y   G  + +  LL  M           
Sbjct: 61  SYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVIT 120

Query: 327 ---------RSGFRADLFTAI----------------AAVSSISTMKNIEWGKQMHANVL 361
                    RSG   D  TA+                 A+S++  +K +  GKQ+H  V+
Sbjct: 121 WNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVV 180

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIF------DSVKTKT---------------- 399
           + G      V  +LIDMY +C   +   ++F      D                      
Sbjct: 181 KAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALL 240

Query: 400 -------------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
                        VVSW+S++   V + + LEA+ LF  M+  GVE + VTI  +LPA  
Sbjct: 241 LFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFA 300

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           N+ AL H +  H +S++ G      V +A+   YAKCG    A  +FD   + S+++++W
Sbjct: 301 NVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFD--AMPSRNVVSW 358

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+MI  YA HGD +   +L+  M++   +PDL+TF  +L AC  AGL EEGR  F EM++
Sbjct: 359 NAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQ 418

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G  P  EHYA MV LLGR+G +DEA +L+ +MPF+PD+ +WG LL +C+++    LAE
Sbjct: 419 GHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAE 478

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           + AEKL  +EP NAGNYVLLSNIYA+   W+GV ++R  +++ GLKK  GCSWIEI   V
Sbjct: 479 VAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKV 538

Query: 687 HEFWAADQSHPQADAIYTILGILELEI 713
           H   A D SHP   AI   L  L +E+
Sbjct: 539 HMLLAGDNSHPMMTAITEKLNQLTIEM 565



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 163/407 (40%), Gaps = 74/407 (18%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           FLR  +    PH+      S L  C      + +HA  ++  GL ++  ++S+L+ SY  
Sbjct: 10  FLRHVSFPPDPHLLP----SALKSCPAQPLARALHAAAVV-SGLAEDPFVASSLLHSYIR 64

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP-------- 129
           LG    ++ VF+ +   N + +  ++   S  G+ E    + +QM    + P        
Sbjct: 65  LGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGL 124

Query: 130 ---------AEDTYPFVIR-----------SCSCLLDFIS-------GEKIHAQVVKLGF 162
                    A D    ++R             SC L  +        G+++H  VVK G 
Sbjct: 125 VSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGC 184

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----------------------- 199
                V  AL++ Y KC    E  +   +    D+ S                       
Sbjct: 185 RLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFRE 244

Query: 200 -----------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
                       W S+++  VQNG+  ++ +LF+ M+  G E +S T+  +L +   + +
Sbjct: 245 FICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAA 304

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L  GR  HC ++   F  D+ V +AL+ MY+K      A+ +FD M  ++ V WN MI  
Sbjct: 305 LMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGG 364

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           Y   G    +++L   M +   + DL T    + + S     E G++
Sbjct: 365 YAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRR 411



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 150/354 (42%), Gaps = 37/354 (10%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN L+S   ++G++  +      M  EG   D+  +   L +  ++K + +G+ VH   V
Sbjct: 121 WNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVV 180

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD---------------------- 298
            +    D  V TAL+ MY K    ++   +F + S  D                      
Sbjct: 181 KAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALL 240

Query: 299 -------------RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
                         V W  +++   Q+G   E+++L   M   G   +  T    + + +
Sbjct: 241 LFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFA 300

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  +  G+  H   LR G  + V V ++L+DMY +C     AR IFD++ ++ VVSW++
Sbjct: 301 NVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNA 360

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKL 464
           MI GY  H  +  A++LF  M+    + D VT   +L AC   G  E   +Y +      
Sbjct: 361 MIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGH 420

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           G++        +     + G ++ A +L +E   +    I W S++ +   +G+
Sbjct: 421 GISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCI-WGSLLGSCRVYGN 473


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 217/708 (30%), Positives = 373/708 (52%), Gaps = 21/708 (2%)

Query: 10  SLQSGHVKFLRFPA------NQTRPHMTATHSFSLLNLCENPQHLQQIH-ARYIILHGLH 62
           SL SG+ +F R P       N  R    +   FSL +L +    L+Q   A  + L    
Sbjct: 91  SLISGYARF-RQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQNEVAHGVCLKMGL 149

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            N  + S L+D YA LG +  +++ F      +S+++  ++      GE+EK   V+ +M
Sbjct: 150 LNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEM 209

Query: 123 ALQSMYPAEDTYPFVIRSC-SCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKC 179
             + +    +   F + S    L D   GE++    VK+G        + +AL+  Y +C
Sbjct: 210 --RGLGLGLELNEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRC 267

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
               +  K   +    D+ S W   I  A     + ++FELF+L+     E +   LIN+
Sbjct: 268 GSKSDAIKMFDEMTEPDVVS-WTERIGAAYD---AIEAFELFRLVLSGNMEVNEYMLINV 323

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L +  E K L+ GR +  +   + +    SVN AL+ MY K   +  A+ +FD+M   D 
Sbjct: 324 LSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDS 383

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWGKQMHA 358
           V WN +I+ Y ++G  K++L++   M     + + +T +A++  ++   N  E   Q+H+
Sbjct: 384 VSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYT-LASILEVAANSNFPEQAMQIHS 442

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            +++ G     S+ + LI  Y +C  +  +++++  +    V+  ++M    V      +
Sbjct: 443 YIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHAD 502

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL+LF        EVD +T+  +L AC  +  LE+ + +H  ++K G++  + V +A+  
Sbjct: 503 ALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVID 562

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCG ++ A + F    +   +++ WN+M+  YA+HG + + F+L+ +M +  ++PD 
Sbjct: 563 VYCKCGTVDEAAKTF--MNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDE 620

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           IT+LG+L +C +AGLV E       M E +G  P  EHYA M++L GR G +++A+  + 
Sbjct: 621 ITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTID 680

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MP  PDA++W  LLS C +H   +L E+ A+KLI ++PEN   YVLLSN+YA+AG+WN 
Sbjct: 681 QMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNA 740

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           V K+R  ++ + + K PG SWI++   VH F+A+D SHP++  IY  L
Sbjct: 741 VGKLRRVMKKKIICKEPGSSWIQVRGSVHYFFASDTSHPESKEIYMKL 788



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 219/470 (46%), Gaps = 16/470 (3%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG-MIQR 192
           YP  +R+ + LL     ++ +A  +K GF + D    + +       G F   +  ++  
Sbjct: 23  YPQALRASASLLHPPLTDQSYALFLKSGF-ALDAFLSSFIVNRFAISGDFARARRFLLDT 81

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
            + D  S WNSLIS   +  +    F+LF  +R  G   D  +L +L++       LE  
Sbjct: 82  PYPDTVS-WNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGC---GVLEQN 137

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
            + H V +         V + LL  Y+KL  ++ A+  F +    D VVW  M+  +  +
Sbjct: 138 EVAHGVCLKMGLLNGFVV-SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWN 196

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G  ++  E+ + M   G   +L    +  S +  + ++  G+Q+    ++ G     S+H
Sbjct: 197 GEFEKGREVFVEMRGLGLGLEL-NEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIH 255

Query: 373 --NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
             N+L++MY  C   + A K+FD +    VVSW+  I     +D ++EA  LF  +    
Sbjct: 256 LNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGA--AYD-AIEAFELFRLVLSGN 312

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           +EV+   +IN+L A      L+  + + G   K G   ++SVN A+   Y KCG +  A 
Sbjct: 313 MEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAAR 372

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +FDE  +   D ++WNS+I+ YA++G   Q  K+++QM+   ++P+  T   +L    N
Sbjct: 373 HIFDE--MLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAAN 430

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           +   E+   I   + +  G+       + ++   G+   + E++ +  D+
Sbjct: 431 SNFPEQAMQIHSYIVK-LGFIVDDSMLSCLITAYGKCNMICESKRVYSDI 479



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 173/382 (45%), Gaps = 22/382 (5%)

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           LR++  L    L    + + + S F  D  +++ +++ ++       A+         D 
Sbjct: 27  LRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDT 86

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +IS Y +   P    +L   + RSG   D F+  + V     +   E  +  H  
Sbjct: 87  VSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVL---EQNEVAHGV 143

Query: 360 VLRNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
            L+ G  + + VS    L+D Y +  D++ A K F        V W++M+ G+V + +  
Sbjct: 144 CLKMGLLNGFVVS---GLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFE 200

Query: 418 EALRLFSEMK--LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--N 473
           +   +F EM+    G+E++  ++ ++L A  ++   E V    G S+K+GL    S+  N
Sbjct: 201 KGREVFVEMRGLGLGLELNEFSLTSVLGALSDVREGEQV---FGLSVKMGLLCGCSIHLN 257

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            A+   Y++CG    A ++FDE  +   D+++W   I A     D  + F+L+  +   +
Sbjct: 258 NALMNMYSRCGSKSDAIKMFDE--MTEPDVVSWTERIGAAY---DAIEAFELFRLVLSGN 312

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           +  +    + +L+A     L++ GR I + + +  GY        +++ + G+ G M  A
Sbjct: 313 MEVNEYMLINVLSAMREPKLLKSGRQI-QGLCQKAGYLLVASVNNALIFMYGKCGEMVAA 371

Query: 594 RELVKDMPFKPDARVWGPLLSA 615
           R +  +M    D+  W  L++ 
Sbjct: 372 RHIFDEM-LCGDSVSWNSLIAG 392



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI-- 559
           D ++WNS+IS YA+       F L+  +++S + PD  +   L+  C   G++E+  +  
Sbjct: 85  DTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGC---GVLEQNEVAH 141

Query: 560 -IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            +  +M    G+  S      +++   + G +D A +  K+  +  D+ VW  ++     
Sbjct: 142 GVCLKMGLLNGFVVS-----GLLDGYAKLGDVDSAEKCFKEF-YIADSVVWTAMVCGFVW 195

Query: 619 HSETE 623
           + E E
Sbjct: 196 NGEFE 200


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/520 (35%), Positives = 313/520 (60%), Gaps = 12/520 (2%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N LI    + G   ++ EL  L           T   L+ S     SL   + VH   + 
Sbjct: 43  NKLIQSLCKQGNLTQALELLSLEPNPAQH----TYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           + F +D  + T L++MYS   S+++A+ +FDK  ++   V+N +  A   +G  +E L +
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 322 LMCMVRSGFRADLFTAI----AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
              M   G  +D FT      A V+S   +  +  G+++HA++LR+G D  V +  +L+D
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVD 218

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV--DF 435
           MY +   ++ A  +F+ +  K VVSWS+MI  Y  + ++ EAL LF E+ LE  ++  + 
Sbjct: 219 MYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNS 278

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           VT++++L AC  + ALE  + +HGY ++ GL+S+  V +A+   YA+CG +E+   +FD+
Sbjct: 279 VTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQ 338

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +D +D+++WNS+IS+Y  HG   +   ++ +M  + V P  I+F+ +L AC +AGLV+
Sbjct: 339 --MDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVD 396

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG+++F  M  ++G  PS EHYA MV+LLGRA  ++EA +++++M  +P  +VWG LL +
Sbjct: 397 EGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGS 456

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++H   ELAE  + +L  +EP NAGNYVLL++IYA AG W+GV +++  L  RGL+K P
Sbjct: 457 CRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVP 516

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           G SWIE+ + ++ F + D+ +P+ + ++ +L  L +E+ E
Sbjct: 517 GRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKE 556



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 164/335 (48%), Gaps = 7/335 (2%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           PA+ TY  +I SC+     +  +++H  +++ GFD    +   L+  Y   D   +N + 
Sbjct: 68  PAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFD-SIDNARK 126

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE--- 245
           +  +        +N+L       G  E+   +++ M   G   D  T   +L++ V    
Sbjct: 127 VFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASEC 186

Query: 246 -LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            +  L  GR +H   +   +   + + T L+ MY+K   + +A  +F++M  K+ V W+ 
Sbjct: 187 FVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSA 246

Query: 305 MISAYYQSGFPKESLELL--MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           MI+ Y ++G   E+LEL   + +       +  T ++ + + + +  +E G+ +H  +LR
Sbjct: 247 MIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILR 306

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
            G D  + V ++L+ MY  C  L   +++FD +  + VVSW+S+I  Y  H    +A+ +
Sbjct: 307 KGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGI 366

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           F EM   GVE   ++ +++L AC + G ++  K L
Sbjct: 367 FEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKML 401



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 207/395 (52%), Gaps = 16/395 (4%)

Query: 32  ATHSFSLLNL-CENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           A H++ LL L C +   L   Q++H R+++ +G  Q+  L++ LI+ Y+    +  +++V
Sbjct: 69  AQHTYELLILSCTHQNSLLDAQRVH-RHLLENGFDQDPFLATKLINMYSFFDSIDNARKV 127

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F+   +    +Y  + + LS  G  E+ L +Y++M    +     TY +V+++C     F
Sbjct: 128 FDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECF 187

Query: 148 IS----GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWN 202
           +S    G +IHA +++ G+D +  +   LV+ Y K  G   N   +  Q   K++ S W+
Sbjct: 188 VSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKF-GCVSNASCVFNQMPVKNVVS-WS 245

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAV 260
           ++I+   +NGK+ ++ ELF+ + +E  +   +S T++++L++   L +LE GR++H   +
Sbjct: 246 AMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYIL 305

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                  L V +AL++MY++   LE  + +FD+M  +D V WN +IS+Y   GF K+++ 
Sbjct: 306 RKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIG 365

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV-LRNGSDYQVSVHNSLIDMY 379
           +   M  +G      + ++ + + S    ++ GK +  ++ + +G    V  +  ++D+ 
Sbjct: 366 IFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLL 425

Query: 380 CECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTH 413
                L  A KI ++++ +     W S++     H
Sbjct: 426 GRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIH 460


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 206/648 (31%), Positives = 338/648 (52%), Gaps = 28/648 (4%)

Query: 45  PQHLQQIHARYIIL---HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL-LYG 100
           P    Q+HA  ++L   H LH + I    L+ SY   G    +  +   +  P  + +  
Sbjct: 26  PTTAAQLHA--LLLKSGHLLHCDSI--HLLLGSYCACGRPFDAHNLLVQMPQPPPVSVSN 81

Query: 101 TILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK 159
           T+L++ +  G   + L +Y QM A   +     T+ F  ++C+ L     G  +H + + 
Sbjct: 82  TLLRSYTGLGFNRQALALYSQMRAFDHL-----TFTFAAKACADLRRRRHGRAVHGRALT 136

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSE 215
            GF     V +ALV  Y++C      E       F  L+SR    WN++I+  V++G++E
Sbjct: 137 AGFGGDGYVQNALVSMYMRCRDVVSAEA-----VFGALRSRTTVSWNTVITGCVKDGRAE 191

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ E+F+ M   G   D  T++++L +  + + L +GR VH +AVV       +V  AL+
Sbjct: 192 RALEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALI 251

Query: 276 SMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRAD 333
            MY K  SLEDAK +FD+ S DKD V W  MI AY  +    ++  L   M V S  + +
Sbjct: 252 DMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPN 311

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T +  +S+ +++ + +  K  HA  +R G      V  +L+D Y +C  +     + +
Sbjct: 312 AVTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYMGMIDMVVE 371

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
               +T  +W++ I GY   +Q  +AL LF +M  E V  D  T+ +++PA      L  
Sbjct: 372 KGSRRTE-TWNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQ 430

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H   +  G    + + T +   YAK G + +A ELF  + +  KD++ W ++I+ Y
Sbjct: 431 AKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVAWELF--QCLPEKDVVAWTTVIAGY 488

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
             HG       LY++M +  V P+ +T   L+ +C +AG+V+EG  +F +M+  +G  P+
Sbjct: 489 GMHGHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRGVHGLMPN 548

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHY  +V++LGRAG ++EA  L++DMPF+P   VW  LL AC +H   E  E+ A+ L 
Sbjct: 549 AEHYLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSALLGACVLHENVEFGEVAAKHLF 608

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            +EP+N GNYVLL  +YAAA +W+ V  +   +  RGL K PG S ++
Sbjct: 609 ELEPDNVGNYVLLGKVYAAADRWSDVQDLWRVMEGRGLHKDPGSSVVD 656


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 214/672 (31%), Positives = 361/672 (53%), Gaps = 44/672 (6%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIHA + I  G   ++ + ++L++ Y   GL   +  VF ++ +P+ + + T+L   S F
Sbjct: 99  QIHA-FAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVL---SGF 154

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
              +  L    +M    +     T   V+  CS    FI G ++H++++K G D    VG
Sbjct: 155 QRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVG 214

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
           +AL+  Y +C    E  +G             NS +          ++  +F  M  EG 
Sbjct: 215 NALITMYSRCCRLVEARRG-------------NSGL----------EAILVFLEMLKEGM 251

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
           + D  +    + +    K  ELGR +H +AV   +   + V   L+S YSK   +EDAK+
Sbjct: 252 KLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKL 311

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F+ + D++ V W  MIS        +++  L   M R G   +  T +  + +I TMKN
Sbjct: 312 VFESIIDRNVVSWTTMISIS-----EEDATSLFNEMRRDGVYPNDVTFVGLIHAI-TMKN 365

Query: 350 -IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +E G+ +H   ++     +++V NSLI MY + E ++ + K+F+ +  + ++SW+S+I 
Sbjct: 366 LVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLIS 425

Query: 409 GYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           GY  +    EAL+ F    +E    E  F ++++ + +   I ++ H +  H + +KLGL
Sbjct: 426 GYAQNGLWQEALQTFLSALMESRPNEFTFGSVLSSIASAEAI-SMRHGQRCHSHILKLGL 484

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           N+   V++A+   YAK G I  +  +F E  +  K+ + W ++ISA+A+HGD+     L+
Sbjct: 485 NTNPIVSSALLDMYAKRGSICESLGVFSETPL--KNEVAWTAIISAHARHGDYEAVMNLF 542

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M++  V+PD ITFL ++TAC   G+V+ G  +F  M + +  EPS EHY+SMV++LGR
Sbjct: 543 KDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGR 602

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG + EA E V  +P      V   LL AC++H   ++A+  A+ LI MEP  +G+YVL+
Sbjct: 603 AGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVLM 662

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK-----LVHEFWAADQSHPQADA 701
           SN+YA  G+W  VAK+R  +R+RG++K  G SW+++G       +H F + D+ HPQ++ 
Sbjct: 663 SNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDVGDADGSLYLHGFSSDDKFHPQSEE 722

Query: 702 IYTILGILELEI 713
           IY +   L LE+
Sbjct: 723 IYRMAETLGLEM 734



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 254/547 (46%), Gaps = 51/547 (9%)

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           L Q    +I S N  +   + +NLS      + L ++K+          D     I   +
Sbjct: 35  LDQSPQTTIASLNRSMLTALRRNLSL-----EALDLFKKQLQWGFVGNIDQVTVAIVLKA 89

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--- 199
           C  D   G +IHA  +  GF S   V ++L+  Y  C  G  +   ++   F++L +   
Sbjct: 90  CCGDSKLGCQIHAFAISSGFISHVTVPNSLMNMY--CKAGLFDRALVV---FENLNNPDI 144

Query: 200 -RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             WN+++S   Q      +F L   M   G  FD+ T   +L    + +    G  +H  
Sbjct: 145 VSWNTVLS-GFQRSDDALNFAL--RMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSR 201

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
            +      ++ V  AL++MYS+   L +A+                       SG   E+
Sbjct: 202 ILKCGLDCEVFVGNALITMYSRCCRLVEAR--------------------RGNSGL--EA 239

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + + + M++ G + D  +   A+S+    K  E G+Q+H+  ++ G D  V V N LI  
Sbjct: 240 ILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLIST 299

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +CED+  A+ +F+S+  + VVSW++MI   ++ +   +A  LF+EM+ +GV  + VT 
Sbjct: 300 YSKCEDIEDAKLVFESIIDRNVVSWTTMIS--ISEE---DATSLFNEMRRDGVYPNDVTF 354

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + ++ A      +E  + +HG  +K    S  +V+ ++   YAK   +  + ++F+E  +
Sbjct: 355 VGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEE--L 412

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV--EE 556
           + ++II+WNS+IS YA++G W +  + +      + RP+  TF  +L++  +A  +    
Sbjct: 413 NYREIISWNSLISGYAQNGLWQEALQTFLSALM-ESRPNEFTFGSVLSSIASAEAISMRH 471

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+     + +  G   +    ++++++  + G + E+  +  + P K +   W  ++SA 
Sbjct: 472 GQRCHSHILK-LGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEV-AWTAIISAH 529

Query: 617 KMHSETE 623
             H + E
Sbjct: 530 ARHGDYE 536


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/508 (36%), Positives = 294/508 (57%), Gaps = 6/508 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +NSLI+  V N    ++ +LF  +R  G      T   +L++     S +LG  +H + V
Sbjct: 79  YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D++  T+LLS+YS    L DA  LFD++ D+  V W  + S Y  SG  +E+++
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   MV  G + D +  +  +S+   + +++ G+ +   +          V  +L+++Y 
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYA 258

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  AR +FDS+  K +V+WS+MI+GY ++    E + LF +M  E ++ D  +I+ 
Sbjct: 259 KCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVG 318

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--NTAIFISYAKCGCIEMAGELFDEEKI 498
            L +C ++GAL+  ++  G S+      L+++    A+   YAKCG +    E+F E K 
Sbjct: 319 FLSSCASLGALDLGEW--GISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK- 375

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KDI+  N+ IS  AK+G     F ++ Q ++  + PD  TFLGLL  CV+AGL+++G 
Sbjct: 376 -EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGL 434

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  +   Y  + + EHY  MV+L GRAG +D+A  L+ DMP +P+A VWG LLS C++
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRL 494

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
             +T+LAE   ++LI++EP NAGNYV LSNIY+  G+W+  A++R  +  +G+KK PG S
Sbjct: 495 VKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYS 554

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTIL 706
           WIE+   VHEF A D+SHP +D IY  L
Sbjct: 555 WIELEGKVHEFLADDKSHPLSDKIYAKL 582



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 138/569 (24%), Positives = 259/569 (45%), Gaps = 50/569 (8%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L+++     HL+QIH   +I H LH +  L + L+           S  +F+    PN 
Sbjct: 18  TLISVACTVNHLKQIHVS-LINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNI 76

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            LY +++        + +TL ++  +    +Y    T+P V+++C+       G  +H+ 
Sbjct: 77  FLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSL 136

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
           VVK GF+   DV        I    G  N+     + F ++  R    W +L S    +G
Sbjct: 137 VVKCGFNH--DVAAMTSLLSIYSGSGRLNDA---HKLFDEIPDRSVVTWTALFSGYTTSG 191

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           +  ++ +LFK M   G + DS  ++ +L + V +  L+ G  +       +  K+  V T
Sbjct: 192 RHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRT 251

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+++Y+K   +E A+ +FD M +KD V W+ MI  Y  + FPKE +EL + M++   + 
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKP 311

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D F+ +  +SS +++  ++ G+   + + R+     + + N+LIDMY +C  +    ++F
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +K K +V  ++ I G   +     +  +F + +  G+  D  T + +L  CV+ G ++
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
                       GL   ++++      YA    +E  G                  M+  
Sbjct: 432 D-----------GLRFFNAISCV----YALKRTVEHYG-----------------CMVDL 459

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           + + G     ++L   M    +RP+ I +  LL+ C    LV++ ++    +KE    EP
Sbjct: 460 WGRAGMLDDAYRLICDMP---MRPNAIVWGALLSGC---RLVKDTQLAETVLKELIALEP 513

Query: 573 -SQEHYASMVNLLGRAGHMDEARELVKDM 600
            +  +Y  + N+    G  DEA E V+DM
Sbjct: 514 WNAGNYVQLSNIYSVGGRWDEAAE-VRDM 541



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 168/315 (53%), Gaps = 3/315 (0%)

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +LF      +  ++N +I+ +  +    E+L+L + + + G     FT    + + +   
Sbjct: 66  LLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRAS 125

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           + + G  +H+ V++ G ++ V+   SL+ +Y     LN A K+FD +  ++VV+W+++  
Sbjct: 126 SRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFS 185

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY T  +  EA+ LF +M   GV+ D   I+ +L ACV++G L+  +++  Y  ++ +  
Sbjct: 186 GYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQK 245

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            S V T +   YAKCG +E A  +FD   +  KDI+TW++MI  YA +    +  +L+ Q
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDS--MVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M Q +++PD  + +G L++C + G ++ G      + + + +  +     +++++  + G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCG 362

Query: 589 HMDEARELVKDMPFK 603
            M    E+ K+M  K
Sbjct: 363 AMARGFEVFKEMKEK 377


>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
 gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
          Length = 849

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/669 (30%), Positives = 349/669 (52%), Gaps = 6/669 (0%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           NQ    +      SLL    +   L+ I A          + +L + ++++Y   G +  
Sbjct: 75  NQKSDFVDPAAYVSLLKQAGDVTALKTIQAHISHSKRFSGDRLLLNCVVEAYGKCGCVKD 134

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           ++ VF+SI  PN   +  +L   ++ G ++  L + +QM L  ++P   T   VI + S 
Sbjct: 135 ARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSE 194

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWN 202
           L D+    KIHA+       ++D V   AL++ Y KC   F  E    Q + KDL    N
Sbjct: 195 LGDWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLAC-CN 253

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           ++IS  +Q G +  +   F  ++  G + +  T   L R+          R+ H   ++S
Sbjct: 254 AMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILS 313

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               D+ VNTAL+SMYS+  SLEDA+ +FD+M  K+ V WN+MI+ Y Q G+  E+L+L 
Sbjct: 314 KLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLY 373

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
           + M  +G   D  T +  + S S  +++  G+ +H +V+  G D  ++V ++LI MY  C
Sbjct: 374 VSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSAC 433

Query: 383 EDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
             L  A  +F    T   +V+SW++M+     + +   AL LF +M LEGV+ + VT ++
Sbjct: 434 GSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGVKANVVTFVS 493

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            + AC +IGAL     +    +  G      + T++   Y KCG ++ A E+F    +  
Sbjct: 494 TIDACSSIGALVEGHAIFERVIVTGYLIDVVLGTSLINLYGKCGRLDYALEVF--HHLSF 551

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           K+I+TWN++++A +++G+ +   +L  +M     +P+ +T L +L  C + GLV +    
Sbjct: 552 KNIVTWNTILAASSQNGEETLSAELLQEMDLDGAQPNEMTLLNMLFGCSHNGLVAKAVSY 611

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F+ M   +   P+ EHY  +V+LLGR+G ++E    +   PF  D+ +W  LL +C +HS
Sbjct: 612 FRSMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISSKPFSLDSVLWMSLLGSCVIHS 671

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           + E     A +++ ++P+NA  YVLLSN++AA G  + V  +     +R +KK    S+I
Sbjct: 672 DVERGLRAARRVLGLDPKNASPYVLLSNMFAAIGMLDAVKSLAKLAGERAMKKEQSRSYI 731

Query: 681 EIGKLVHEF 689
           E+  +VHEF
Sbjct: 732 EVNGVVHEF 740


>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
          Length = 788

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 210/685 (30%), Positives = 363/685 (52%), Gaps = 46/685 (6%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           ++ + N+C+    LQ       +H  Y++  GLH  + ++S+L D Y   G+L+ +++VF
Sbjct: 133 NYVVPNVCKACGALQWTWFGRGVHG-YLVKAGLHDCVFVASSLADMYGKCGVLNDARKVF 191

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N + +  ++    + G  E+ + +   M  + + P   T    + + + +    
Sbjct: 192 DKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIE 251

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  +  G +  + +G +++ FY K  G  E  + +  R  +     WN LIS  
Sbjct: 252 EGKQSHAIAIVNGLEMDNILGTSILNFYCKV-GLVEYAEMIFDRMIEKDVVTWNLLISGY 310

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  + +  + KLMR+E   +DS TL  L+ +     +L+LG+ V C  +   F  ++
Sbjct: 311 VQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESEI 370

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + +  + MY+K  S+ DAK +FD   +KD ++WN +++AY  SG   E+L L   M   
Sbjct: 371 VLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQLE 430

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
               ++ T  + + S+     ++  K+M   +  +G                        
Sbjct: 431 SVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSG------------------------ 466

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             IF ++     +SW++M+ G V +  S EA+    +M+  G+  +  +I   L AC ++
Sbjct: 467 --IFPNL-----ISWTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSACAHL 519

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVN--TAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +L   + +HGY ++  L   SSV+  T++   YAKCG I  A + F  +  D  ++  +
Sbjct: 520 ASLNFGRSIHGYIIR-NLQHSSSVSFVTSLVDMYAKCGDINQAEKAFGSKLYD--ELPLY 576

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+MISAYA +G+  +   LY +++   ++PD ITF  LL+AC +AG + +   IF EM  
Sbjct: 577 NAMISAYALYGNMKEAIALYRRLEDMAIKPDSITFTSLLSACSHAGDIVQAINIFTEMVS 636

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G +P  EHY  MV+LL  +G  ++A EL+K+MP+KPDAR+   L+++     +TEL +
Sbjct: 637 KHGMKPCLEHYGLMVDLLASSGETNKALELIKEMPYKPDARMIQSLVASNNKQHKTELVD 696

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI-GKL 685
             +++L+  EPEN+GNYV +SN +A  G W+ V KMR  ++ +GLKK PGCSWI+I G+ 
Sbjct: 697 YLSKQLLESEPENSGNYVTISNAFAIEGSWDEVVKMREMMKAKGLKKKPGCSWIQIKGEX 756

Query: 686 -VHEFWAADQSHPQADAIYTILGIL 709
            VH F A D++H + D I  IL +L
Sbjct: 757 GVHLFVANDKTHIKNDEIQRILALL 781



 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 261/523 (49%), Gaps = 17/523 (3%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG- 161
           + +L K GE  + L + K+M  +++    + Y  +++ C    D  +G++IHA+++K G 
Sbjct: 2   VSSLCKHGEIREALRLVKEMEFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNGD 61

Query: 162 -FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEK 216
            +     +   L+ FY KCD        + Q  F  L+ R    W ++I L  + G  E 
Sbjct: 62  FYARNQYIETKLLIFYAKCDA-----IEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEG 116

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +   F  M   G   D+  + N+ ++   L+    GR VH   V +     + V ++L  
Sbjct: 117 ALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLAD 176

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY K   L DA+ +FDK+ +++ V WN ++  Y Q+G  +E++ LL  M + G      T
Sbjct: 177 MYGKCGVLNDARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVT 236

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               +S+ + ++ IE GKQ HA  + NG +    +  S+++ YC+   +  A  IFD + 
Sbjct: 237 VSTCLSASANIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMI 296

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K VV+W+ +I GYV      +A+ +   M+LE +  D VT+  ++ A      L+  K 
Sbjct: 297 EKDVVTWNLLISGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKE 356

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +  Y ++    S   + +     YAKCG I  A ++FD      KD+I WN++++AYA  
Sbjct: 357 VQCYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTV--EKDLILWNTLLAAYADS 414

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +  +L+  M+   V P++IT+  ++ + +  G V+E + +F +M+ S G  P+   
Sbjct: 415 GLSGEALRLFYDMQLESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSS-GIFPNLIS 473

Query: 577 YASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
           + +M+N L + G  +EA   ++ M     +P++      LSAC
Sbjct: 474 WTTMMNGLVQNGCSEEAINFLRKMQESGLRPNSFSITVALSAC 516


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 196/622 (31%), Positives = 334/622 (53%), Gaps = 13/622 (2%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N++ + +++K      E+E  L +  +M        E T   ++++CS     I G++ H
Sbjct: 5   NTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFH 64

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
             V+K GFD    VG +L+  Y +     + EK       KD++  +N +I    + G  
Sbjct: 65  CFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRC-FNFMILEYARAGNG 123

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           EK+  +F  M   G + +  T  N++ +      +E G     ++    F  + S+  A+
Sbjct: 124 EKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAI 183

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES----LELLMCMVRSGF 330
           ++MY K     +A+ +F  M+D++ + W  +IS Y +SG  K++    +EL +C V   F
Sbjct: 184 INMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVN--F 241

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
            + L T I  +   S  +N+E G Q+H  V++ G    V++  +L+D+Y +C +L  AR 
Sbjct: 242 DSSLLTTI--LDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARM 299

Query: 391 IFDSVKTKTVVSWSSMIKGYV--THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           +FD + +K + S+++++ G++  + D   + + LF+  +L+G++ D VT   +L    N 
Sbjct: 300 VFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANH 359

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             L   +  H Y++K G  +  SV  A+   YAKCG IE A  +F+   ++  D I+WN+
Sbjct: 360 STLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFN--VMNDHDSISWNA 417

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MISAYA HG  ++   L+ +M + +  PD IT L +L AC  +GL  +G  +F  M+  Y
Sbjct: 418 MISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKY 477

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
           G +P  EHYA MV+LLGRAGH+ EA +++   PF     +W  L++ CK+  +    +L 
Sbjct: 478 GIKPLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLA 537

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           ++ L+ + P  AG+Y+L+SN+YA     +  AK+RT + D  L K  G SWIEI   VH 
Sbjct: 538 SKYLLELSPVEAGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEIDDKVHH 597

Query: 689 FWAADQSHPQADAIYTILGILE 710
           F A+ + HP+++ IY  L +L 
Sbjct: 598 FVASGKDHPESNEIYAELDLLR 619



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 234/494 (47%), Gaps = 23/494 (4%)

Query: 38  LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +L  C +P +    QQ H  ++I  G  +N+++ ++LI  Y    L   +++VF+S+   
Sbjct: 47  ILQACSSPDYRIFGQQFHC-FVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACK 105

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +   +  ++   ++ G  EK + V+  M    + P + T+  +I +C   L    GE+  
Sbjct: 106 DVRCFNFMILEYARAGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFL 165

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM---IQRKFKDLKSR----WNSLISL 207
               K GF +   +G+A++  Y K        KGM    +R F  +  R    W +LIS 
Sbjct: 166 GLSFKYGFLNETSIGNAIINMYGK--------KGMAREAERMFSAMTDRNLISWTALISG 217

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             ++G  +K+ + F  + + G  FDS  L  +L    E ++LELG  +H + +   +   
Sbjct: 218 YTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACA 277

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES--LELLMCM 325
           +++ TAL+ +Y+K  +L  A+M+FD +S K    +N +++ + ++    E   + L    
Sbjct: 278 VNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHF 337

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
              G + D+ T    +S  +    +  G+  HA  ++ G +  +SV N++I MY +C  +
Sbjct: 338 RLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSI 397

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A ++F+ +     +SW++MI  Y  H Q  + L LF EM  +    D +TI++IL AC
Sbjct: 398 EEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQAC 457

Query: 446 VNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
              G   + +   +    K G+  L      +     + G +  A ++ ++    SK  +
Sbjct: 458 TYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDLLGRAGHLSEAMDIINKSPF-SKSTL 516

Query: 505 TWNSMISAYAKHGD 518
            W ++++     GD
Sbjct: 517 LWRTLVNVCKLCGD 530



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 13/303 (4%)

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           ++ + W  +I  Y      + +L +   M +SG   +  T    + + S+     +G+Q 
Sbjct: 4   RNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQF 63

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H  V++ G D  V V  SLI MY   +    A K+FDS+  K V  ++ MI  Y      
Sbjct: 64  HCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNG 123

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            +A+R+F  M   G++ +  T  NI+ AC     +E  +   G S K G  + +S+  AI
Sbjct: 124 EKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAI 183

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              Y K G    A  +F    +  +++I+W ++IS Y + GD  +    + ++    V  
Sbjct: 184 INMYGKKGMAREAERMF--SAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNF 241

Query: 537 D---LITFLGLLTACVN--AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           D   L T L   + C N   GL   G +I        GY  +     ++V+L  + G++ 
Sbjct: 242 DSSLLTTILDGCSECRNLELGLQIHGLVI------KLGYACAVNIGTALVDLYAKCGNLM 295

Query: 592 EAR 594
            AR
Sbjct: 296 SAR 298


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/592 (32%), Positives = 322/592 (54%), Gaps = 42/592 (7%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLI 205
           ++IH+  +K+G  S       ++ F    + G    K +  R+  D   +     WN++I
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESG----KMIYARQVFDAIPQPTLFIWNTMI 79

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
               +    +    ++ LM     + D  T   LL+      +L+ G+++   AV   F 
Sbjct: 80  KGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFD 139

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            +L V  A + M+S    ++ A+ +FD     + V WNIM+S Y +    K+S  L + M
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM 199

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
            + G   +  T +  +S+ S +K++E GK ++  +     +  + + N LIDM+  C ++
Sbjct: 200 EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEM 259

Query: 386 NCARKIFDSVKTKTVVSWSS-------------------------------MIKGYVTHD 414
           + A+ +FD++K + V+SW+S                               MI GY+  +
Sbjct: 260 DEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMN 319

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           + +EAL LF EM++  V+ D  T+++IL AC ++GALE  +++  Y  K  + + + V  
Sbjct: 320 RFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGN 379

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y KCG +  A ++F E  +  KD  TW +MI   A +G   +   +++ M ++ +
Sbjct: 380 ALIDMYFKCGNVGKAKKVFKE--MHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASI 437

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            PD IT++G+L AC +AG+VE+G+  F  M   +G +P+  HY  MV+LLGRAG ++EA 
Sbjct: 438 TPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAH 497

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           E++ +MP KP++ VWG LL AC++H   +LAE+ A++++ +EPEN   YVLL NIYAA  
Sbjct: 498 EVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACK 557

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +W  + ++R  + +RG+KKTPGCS +E+   V+EF A DQSHPQ+  IY  L
Sbjct: 558 RWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKL 609



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/529 (23%), Positives = 232/529 (43%), Gaps = 47/529 (8%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQ 86
           H       SLL  C++   L+QIH+  I + GL  + +    +I        G +  ++Q
Sbjct: 4   HCFGESPISLLEKCKSMYQLKQIHSHTIKM-GLSSDPLFQKRVIAFCCAHESGKMIYARQ 62

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           VF++I  P   ++ T++K  S+    +  + +Y  M   ++ P   T+PF+++  +  + 
Sbjct: 63  VFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMA 122

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-----RW 201
              G+ +    VK GFDS   V  A +  +  C          + RK  D+        W
Sbjct: 123 LQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLC------RLVDLARKVFDMGDAWEVVTW 176

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N ++S   +  + +KS  LF  M   G   +S TL+ +L +  +LK LE G+ ++     
Sbjct: 177 NIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING 236

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-------------------------- 295
               ++L +   L+ M++    +++A+ +FD M                           
Sbjct: 237 GIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKY 296

Query: 296 -----DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
                ++D V W  MI  Y +     E+L L   M  S  + D FT ++ +++ + +  +
Sbjct: 297 FDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGAL 356

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           E G+ +   + +N       V N+LIDMY +C ++  A+K+F  +  K   +W++MI G 
Sbjct: 357 ELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGL 416

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSL 469
             +    EAL +FS M    +  D +T I +L AC + G +E  + +    +M+ G+   
Sbjct: 417 AINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPN 476

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +    +     + G +E A E+     +    I+ W S++ A   H +
Sbjct: 477 VTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIV-WGSLLGACRVHKN 524


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 218/662 (32%), Positives = 359/662 (54%), Gaps = 23/662 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL--SKFGEYEKTLL 117
           GL  +L + S L+ ++A  G LS +++VFN + + N++    ++  L   K+GE E T L
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGE-EATKL 296

Query: 118 VYKQMALQSMYPAEDTYPFVIRS-----CSCLLDFISGEKIHAQVVKLGF-DSFDDVGDA 171
                ++  + P  ++Y  ++ S      +  +    G ++H  V+  G  D    +G+ 
Sbjct: 297 FMDMNSMIDVSP--ESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG 354

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           LV  Y KC    +  +       KD  S WNS+I+   QNG   ++ E +K MR      
Sbjct: 355 LVNMYAKCGSIADARRVFYFMTDKDSVS-WNSMITGLDQNGCFIEAVERYKSMRRHDILP 413

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
            S TLI+ L S   LK  +LG+ +H  ++      ++SV+ AL+++Y++   L + + +F
Sbjct: 414 GSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIF 473

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAAVSSISTMK 348
             M + D+V WN +I A  +S   +   E ++C +   R+G + +  T  + +S++S++ 
Sbjct: 474 SSMPEHDQVSWNSIIGALARS--ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLS 531

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV-KTKTVVSWSSMI 407
             E GKQ+H   L+N    + +  N+LI  Y +C +++   KIF  + + +  V+W+SMI
Sbjct: 532 FGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMI 591

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY+ ++   +AL L   M   G  +D      +L A  ++  LE    +H  S++  L 
Sbjct: 592 SGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE 651

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S   V +A+   Y+KCG ++ A   F+   +  ++  +WNSMIS YA+HG   +  KL+ 
Sbjct: 652 SDVVVGSALVDMYSKCGRLDYALRFFNTMPV--RNSYSWNSMISGYARHGQGEEALKLFE 709

Query: 528 QMK-QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            MK      PD +TF+G+L+AC +AGL+EEG   F+ M +SYG  P  EH++ M ++LGR
Sbjct: 710 TMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGR 769

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYV 644
           AG +D+  + ++ MP KP+  +W  +L AC   +  + EL +  AE L  +EPENA NYV
Sbjct: 770 AGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYV 829

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           LL N+YAA G+W  + K R  ++D  +KK  G SW+ +   VH F A D+SHP AD IY 
Sbjct: 830 LLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYK 889

Query: 705 IL 706
            L
Sbjct: 890 KL 891



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 146/609 (23%), Positives = 293/609 (48%), Gaps = 28/609 (4%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           MT     S +  C   +   +     +  + L +++ L +NLI++Y   G    +++VF+
Sbjct: 1   MTNCVPLSFVQSCVGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFD 60

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL--LDF 147
            +   N + +  I+   S+ GE+++ L+  + M  + ++  +  +  V+R+C  +  +  
Sbjct: 61  EMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGI 120

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
           + G +IH  + KL +     V + L+  Y KC G      G     F D++ +    WNS
Sbjct: 121 LFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSV----GYALCAFGDIEVKNSVSWNS 176

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGA---EFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +IS+  Q G    +F +F  M+ +G+   E+  G+L+    S  E   + L   + C   
Sbjct: 177 IISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTE-PDVRLLEQIMCTIQ 235

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S    DL V + L+S ++K  SL  A+ +F++M  ++ V  N ++    +  + +E+ +
Sbjct: 236 KSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATK 295

Query: 321 LLMCM-----VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQVSVHNS 374
           L M M     V       L ++     S++    ++ G+++H +V+  G  D+ V + N 
Sbjct: 296 LFMDMNSMIDVSPESYVILLSSFPEY-SLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG 354

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           L++MY +C  +  AR++F  +  K  VSW+SMI G   +   +EA+  +  M+   +   
Sbjct: 355 LVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPG 414

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
             T+I+ L +C ++   +  + +HG S+KLG++   SV+ A+   YA+ G +    ++F 
Sbjct: 415 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIF- 473

Query: 495 EEKIDSKDIITWNSMISAYAK-HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
              +   D ++WNS+I A A+      +    +   +++  + + ITF  +L+A  +   
Sbjct: 474 -SSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSF 532

Query: 554 VEEGRIIFK-EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            E G+ I    +K +   E + E+  +++   G+ G MD   ++   M  + D   W  +
Sbjct: 533 GELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSM 590

Query: 613 LSACKMHSE 621
           +S   +H+E
Sbjct: 591 ISG-YIHNE 598



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/538 (25%), Positives = 259/538 (48%), Gaps = 60/538 (11%)

Query: 49  QQIHARYIILHGLHQNLI-LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +++H  ++I  GL   ++ + + L++ YA  G ++ +++VF  +T  +S+ + +++  L 
Sbjct: 333 REVHG-HVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLD 391

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           + G + + +  YK M    + P   T    + SC+ L     G++IH + +KLG D    
Sbjct: 392 QNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVS 451

Query: 168 VGDALVEFYIKCDGGFENE-KGMIQRKFKDLKSRWNSLISLAVQNGKS-EKSFELFKLMR 225
           V +AL+  Y   + G+ NE + +     +  +  WNS+I    ++ +S  ++   F   +
Sbjct: 452 VSNALMTLY--AETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQ 509

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G + +  T  ++L +   L   ELG+ +H +A+ ++   + +   AL++ Y K   ++
Sbjct: 510 RAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMD 569

Query: 286 DAKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
             + +F +M+++ D V WN MIS Y  +    ++L+L+  M+++G R D F     +S+ 
Sbjct: 570 GCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAF 629

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           +++  +E G ++HA  +R   +  V V ++L+DMY +C  L+ A + F+++  +   SW+
Sbjct: 630 ASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWN 689

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEH-VKYLHGYSM 462
           SMI GY  H Q  EAL+LF  MKL+G    D VT + +L AC + G LE   K+    S 
Sbjct: 690 SMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSD 749

Query: 463 KLGLNSLSSVNTAIFISYAKC--GCIEMAGEL-----FDEEKIDSKDIITWNSMISA--- 512
             GL        A  I +  C    +  AGEL     F E+     +++ W +++ A   
Sbjct: 750 SYGL--------APRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCR 801

Query: 513 ---------------------------------YAKHGDWSQCFKLYTQMKQSDVRPD 537
                                            YA  G W    K   +MK +DV+ +
Sbjct: 802 ANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKE 859



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 160/611 (26%), Positives = 281/611 (45%), Gaps = 35/611 (5%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNL------ILSSNLIDSYAN-LGLLSLSQQVFN 89
           S+L  C+    +  +  R I  HGL   L      ++S+ LI  Y   +G +  +   F 
Sbjct: 107 SVLRACQEIGSVGILFGRQI--HGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFG 164

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL--DF 147
            I   NS+ + +I+   S+ G+      ++  M      P E T+  ++ +   L   D 
Sbjct: 165 DIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDV 224

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
              E+I   + K G  +   VG  LV  + K            ++ F  +++R     N 
Sbjct: 225 RLLEQIMCTIQKSGLLTDLFVGSGLVSAFAK-----SGSLSYARKVFNQMETRNAVTLNG 279

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK-----SLELGRIVHCV 258
           L+   V+    E++ +LF  M     +    + + LL S  E        L+ GR VH  
Sbjct: 280 LMVGLVRQKWGEEATKLFMDMN-SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGH 338

Query: 259 AVVS---DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
            + +   DF   + +   L++MY+K  S+ DA+ +F  M+DKD V WN MI+   Q+G  
Sbjct: 339 VITTGLVDFM--VGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCF 396

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            E++E    M R       FT I+++SS +++K  + G+Q+H   L+ G D  VSV N+L
Sbjct: 397 IEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNAL 456

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL-EALRLFSEMKLEGVEVD 434
           + +Y E   LN  RKIF S+     VSW+S+I      ++SL EA+  F   +  G +++
Sbjct: 457 MTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLN 516

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            +T  ++L A  ++   E  K +HG ++K  +   ++   A+   Y KCG ++   ++F 
Sbjct: 517 RITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIF- 575

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
               + +D +TWNSMIS Y  +   ++   L   M Q+  R D   +  +L+A  +   +
Sbjct: 576 SRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATL 635

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           E G  +      +   E      +++V++  + G +D A      MP + ++  W  ++S
Sbjct: 636 ERGMEVHACSVRAC-LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMIS 693

Query: 615 ACKMHSETELA 625
               H + E A
Sbjct: 694 GYARHGQGEEA 704



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 146/299 (48%), Gaps = 17/299 (5%)

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H+ + +N  D  V + N+LI+ Y E  D   ARK+FD +  +  VSW+ ++ GY  + + 
Sbjct: 24  HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV--KYLHGYSMKLGLNSLSSVNT 474
            EAL    +M  EG+  +    +++L AC  IG++  +  + +HG   KL     + V+ 
Sbjct: 84  KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSN 143

Query: 475 AIFISYAKC-GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            +   Y KC G +  A   F +  I+ K+ ++WNS+IS Y++ GD    F++++ M+   
Sbjct: 144 VLISMYWKCIGSVGYALCAFGD--IEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDG 201

Query: 534 VRPDLITFLGLL-TACVNAGLVEEGRIIFKEMK---ESYGYEPSQEHYASMVNLLGRAGH 589
            RP   TF  L+ TAC    L E    + +++    +  G        + +V+   ++G 
Sbjct: 202 SRPTEYTFGSLVTTAC---SLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGS 258

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE--KLISMEPENAGNYVLL 646
           +  AR++   M  +    + G ++   +     E  +L  +   +I + PE   +YV+L
Sbjct: 259 LSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE---SYVIL 314


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 180/502 (35%), Positives = 283/502 (56%), Gaps = 8/502 (1%)

Query: 201 WNSLI-SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +N++I SL+  N      F L++ M + G   D+ TL  LL++  +  +      +H  +
Sbjct: 105 FNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHS 164

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + +    +L V   L+  Y+    +E  + +FD+    D + W  +I AY + G+P E++
Sbjct: 165 IKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAI 224

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH--NSLID 377
                  R    AD  T +  +S+ S + +   GK++ A +  +  D    V   N+L+D
Sbjct: 225 A---AFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLD 281

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY +C   + AR++F  +  K +VSW+SMI G        EAL +F  M+  G++ D VT
Sbjct: 282 MYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVT 341

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           ++ +L +C N+G LE  K++H Y  K  + +   V  A+   YAKCG I+ A  +F   K
Sbjct: 342 LVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMK 401

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
              KD+ ++ +MI  +A HG   +   ++++M +  VRPD +T +G+L+AC +AGL+EEG
Sbjct: 402 --CKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEG 459

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           R  F++M   Y  +P  EHY  MV+LLGRAG + EA      MP  PDA VWG LL ACK
Sbjct: 460 RRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACK 519

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H++ EL E   +KLI MEPE  G Y+L+SNIY++A +W    K R  ++   +KKTPGC
Sbjct: 520 IHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGC 579

Query: 678 SWIEIGKLVHEFWAADQSHPQA 699
           S IE+  +VHEF   ++SHP++
Sbjct: 580 SSIEVDGMVHEFRKGEKSHPKS 601



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 205/442 (46%), Gaps = 43/442 (9%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS-------QQVFNS 90
           LL+ C++ + ++QIHA            I+ +N   S   L ++SL        QQ  + 
Sbjct: 32  LLSSCKSVREIKQIHAS-----------IIKANTTRSTTTLPIISLCTKITSLLQQDVHL 80

Query: 91  ITSPNSLLYGTILKNL-----------------SKFGEYEKTLLVYKQMALQSMYPAEDT 133
             S  +L Y + L N                  +    +     +Y+QM L  + P   T
Sbjct: 81  ADSIQNLWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYT 140

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN-EKGMIQR 192
            P+++++CS    FI   +IHA  +K G  S   V + L+ FY    G  E  EK   Q 
Sbjct: 141 LPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFY-AVSGFIEAVEKVFDQG 199

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
              DL S W +LI    + G   ++   F  M       D  TL+ +L +  +L    LG
Sbjct: 200 PHWDLIS-WTTLIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLG 255

Query: 253 R--IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           +  + +    + D   D+ +  ALL MY K      A+ LF  M  K+ V WN MIS   
Sbjct: 256 KKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLA 315

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G  KE+L +   M   G + D  T +  ++S + + ++E GK +H+ + +N       
Sbjct: 316 HQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGY 375

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V N+L+DMY +C  ++ A  +F ++K K V S+++MI G+  H ++  AL +FSEM   G
Sbjct: 376 VANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMG 435

Query: 431 VEVDFVTIINILPACVNIGALE 452
           V  D VT++ +L AC + G LE
Sbjct: 436 VRPDHVTLVGVLSACSHAGLLE 457



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 58  LHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLL 117
           L  +H ++ L + L+D Y   G   L++Q+F+ +   N + + +++  L+  G +++ L 
Sbjct: 266 LFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALH 325

Query: 118 VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177
           ++++M    + P   T   V+ SC+ L D   G+ +H+ + K    +   V +ALV+ Y 
Sbjct: 326 MFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYA 385

Query: 178 KC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
           KC   D  F   + M   K KD+ S    ++  A+ +GK++++  +F  M   G   D  
Sbjct: 386 KCGSIDQAFMVFQAM---KCKDVYSYTAMIVGFAM-HGKADRALAIFSEMPRMGVRPDHV 441

Query: 235 TLINLLRSTVELKSLELGR 253
           TL+ +L +      LE GR
Sbjct: 442 TLVGVLSACSHAGLLEEGR 460


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 296/548 (54%), Gaps = 42/548 (7%)

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           KD+ S WNSL+S   QNG  +++ E+F  M     E +S +   LL + V    +E    
Sbjct: 140 KDVVS-WNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEA-- 192

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
             C+   S    DL     L+  + +   L DA+ LFDKM  +D + WN MIS Y Q G 
Sbjct: 193 --CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGG 250

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSS----------------ISTMKNIEWGKQMHA 358
             ++  L      S  R D+FT  A VS                 +     + +   +  
Sbjct: 251 LSQARRLF---DESPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG 306

Query: 359 NVLRNGSD-----------YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            V     D             +S  N++I  Y +  D+  ARK FD +  +  VSW+++I
Sbjct: 307 YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAII 366

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY       EAL +F E+K +G  ++  T    L  C +I ALE  K +HG ++K+G  
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           +   V  A+   Y KCG I+ A + F  E I+ KD+++WN+M++ YA+HG   Q   ++ 
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTF--EGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            MK + V+PD IT +G+L+AC + GL++ G   F  M + YG  P+ +HY  M++LLGRA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++EA++L+++MPF+P A  WG LL A ++H  TEL E  AE +  MEP+N+G YVLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           N+YAA+G+W    KMR+ +RD G++K PG SW+E+   +H F   D SHP+ + IY  L 
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLE 664

Query: 708 ILELEIME 715
            L+L++ E
Sbjct: 665 ELDLKMRE 672



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 222/464 (47%), Gaps = 33/464 (7%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  ++L+  YA  G +  +++VF+++   NS+ +  +L      G  E+  L++   
Sbjct: 140 KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF--- 196

Query: 123 ALQSMYPAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
                   E    + + S +CL+  F+  +K+     +  FD    V DA+   +     
Sbjct: 197 --------ESKSDWDLISWNCLMGGFVRKKKLGD--ARWLFDKM-PVRDAIS--WNTMIS 243

Query: 182 GFENEKGMIQ--RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           G+    G+ Q  R F +  +R    W +++S  VQNG  +++   F  M     E +  +
Sbjct: 244 GYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVS 299

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
              ++   V+ K +++ R +      S  C+++S    +++ Y ++  +  A+  FD M 
Sbjct: 300 YNAMIAGYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP 355

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            +D V W  +I+ Y QSG  +E+L + + + + G   +  T   A+S+ + +  +E GKQ
Sbjct: 356 QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQ 415

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   ++ G      V N+L+ MY +C  ++ A   F+ ++ K VVSW++M+ GY  H  
Sbjct: 416 IHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGF 475

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNT 474
             +AL +F  MK  GV+ D +T++ +L AC + G L+   +Y +  +   G+   S   T
Sbjct: 476 GRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYT 535

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +     + G +E A +L            +W +++ A   HG+
Sbjct: 536 CMIDLLGRAGRLEEAQDLIRNMPF-QPGAASWGALLGASRIHGN 578



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 192/447 (42%), Gaps = 49/447 (10%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +WN  IS  ++NG  + +  +F  M    +   +  +   LR++       L R +    
Sbjct: 51  KWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS----KFNLARNLFDQM 106

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
                 +DL     +L+ Y +   L DA+ LFD M +KD V WN ++S Y Q+G+  E+ 
Sbjct: 107 PE----RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 320 E---------------LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG----------K 354
           E               LL   V +G    +  A     S S    I W           K
Sbjct: 163 EVFDNMPEKNSISWNGLLAAYVHNG---RIEEACLLFESKSDWDLISWNCLMGGFVRKKK 219

Query: 355 QMHANVLRNGSDYQVSVH-NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
              A  L +    + ++  N++I  Y +   L+ AR++FD   T+ V +W++M+ GYV +
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               EA   F EM  E  EV +  +I      V    ++  + L      +   ++SS N
Sbjct: 280 GMLDEAKTFFDEMP-EKNEVSYNAMI---AGYVQTKKMDIARELF---ESMPCRNISSWN 332

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           T I   Y + G I  A + FD   +  +D ++W ++I+ YA+ G + +   ++ ++KQ  
Sbjct: 333 TMI-TGYGQIGDIAQARKFFD--MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
              +  TF   L+ C +   +E G+ I  +  +  GY        +++ +  + G +DEA
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVK-MGYGTGCFVGNALLAMYFKCGSIDEA 448

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHS 620
            +  + +  K D   W  +L+    H 
Sbjct: 449 NDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 185/409 (45%), Gaps = 48/409 (11%)

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST-MKNIE 351
           ++ D D + WN  IS + ++G    +L +   M R        ++++  + IS  ++N +
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR-------SSVSYNAMISGYLRNSK 95

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +   +  N+     +  +   N ++  Y     L  AR++FD +  K VVSW+S++ GY 
Sbjct: 96  F--NLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    EA  +F  M     E + ++   +L A V+ G +E    L        L S + 
Sbjct: 154 QNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNC 209

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +    F+   K G    A  LFD  K+  +D I+WN+MIS YA+ G  SQ  +L+ +   
Sbjct: 210 LMGG-FVRKKKLG---DARWLFD--KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT 263

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            DV     T+  +++  V  G+++E +  F EM E      ++  Y +M+    +   MD
Sbjct: 264 RDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEK-----NEVSYNAMIAGYVQTKKMD 314

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELT-AEKLISMEPE-NAGNYVLLSNI 649
            AREL + MP + +   W  +++        ++ ++  A K   M P+ +  ++  +   
Sbjct: 315 IARELFESMPCR-NISSWNTMITG-----YGQIGDIAQARKFFDMMPQRDCVSWAAIIAG 368

Query: 650 YAAAGKWNGVAKMRTFLRDRGL---KKTPGCSW--------IEIGKLVH 687
           YA +G +     M   ++  G    + T GC+         +E+GK +H
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 216/693 (31%), Positives = 362/693 (52%), Gaps = 61/693 (8%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y+   GLH  + ++S+L D Y   G+L  +++VF
Sbjct: 149 NFVVPNVCKACGALQWSRFGRGVHG-YVAKAGLHHCVFVASSLADMYGKCGVLDDARKVF 207

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N++ +  ++    + G YE+ + +  +M  + + P   T    + + + +    
Sbjct: 208 DYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIE 267

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK----GMIQRKFKDLKSRWNSL 204
            G++ HA  +  G +  + +G +++ FY K  G  E  +    GMI+   KD+ + WN L
Sbjct: 268 EGKQSHAIAIVNGLELDNILGTSILNFYCKV-GLIEYAEMIFDGMIE---KDVVT-WNLL 322

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           IS  VQ G  E++  + +LMR E  +FD  TL  L+ +    ++L+LG+ + C  +    
Sbjct: 323 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGL 382

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ + +  + MY+K  S+ +AK +FD    KD ++WN ++SAY  SG   E+L L   
Sbjct: 383 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYE 442

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M       ++ T    + S+                LRNG                    
Sbjct: 443 MQLESVPPNVITWNLIILSL----------------LRNGQ------------------- 467

Query: 385 LNCARKIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +N A+++F  +++  +    +SW++M+ G V +  S EA+    +M+  G+  +  TI  
Sbjct: 468 VNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITV 527

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKID 499
            L ACVN+ +L   + +HGY ++    S S S+ T++   YAKCG I  A  +F  +   
Sbjct: 528 ALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKL-- 585

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
             ++  +N+MISAYA +G   +   LY  ++   V+PD IT   LL+AC     V +   
Sbjct: 586 CSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIE 645

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +F++M   +G +P  EHY  MV+LL  AG  D+A  L+++MP+KPDAR+   L  +C   
Sbjct: 646 VFRDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQ 705

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
            +TEL E  ++ L+  EP+N+GNYV++SN YA  G W+ VAKMR  ++ +GLKK PGCSW
Sbjct: 706 HKTELVEYLSKHLLESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSW 765

Query: 680 IEIG---KLVHEFWAADQSHPQADAIYTILGIL 709
           I+I    + VH F A D++H + D I  +L +L
Sbjct: 766 IQIKGEEEGVHVFVANDKTHLRNDEIQRMLALL 798



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/532 (28%), Positives = 265/532 (49%), Gaps = 17/532 (3%)

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
           P S  Y   + +L K GE  + L +  +M  +++    + Y  +++ C    D  +G++I
Sbjct: 9   PLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQI 68

Query: 154 HAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISL 207
           HAQ++K G  +   + +   LV FY KCD        + Q  F  L+ R    W ++I +
Sbjct: 69  HAQILKKGDFYARNEYIETKLVIFYAKCDA-----LEIAQVLFSKLRVRNVFSWAAIIGV 123

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
             + G  E +   F  M   G   D+  + N+ ++   L+    GR VH     +     
Sbjct: 124 KCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHC 183

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           + V ++L  MY K   L+DA+ +FD + D++ V WN ++  Y Q+G  +E++ LL  M +
Sbjct: 184 VFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRK 243

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G      T    +S+ + M  IE GKQ HA  + NG +    +  S+++ YC+   +  
Sbjct: 244 EGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEY 303

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A  IFD +  K VV+W+ +I GYV      EA+ +   M+ E ++ D VT+  ++ A  +
Sbjct: 304 AEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATS 363

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
              L+  K +  Y ++ GL S   + +     YAKCG I  A ++FD      KD+I WN
Sbjct: 364 TQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTV--QKDLILWN 421

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +++SAYA  G   +  +L+ +M+   V P++IT+  ++ + +  G V E + +F +M+ S
Sbjct: 422 TLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSS 481

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
            G  P+   + +M+N L + G  +EA   ++ M     +P+A      LSAC
Sbjct: 482 -GIFPNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSAC 532



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 14/227 (6%)

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D  +     S+   +     + +  EAL L +EM    + +       IL  CV    L 
Sbjct: 4   DQARIPLSTSYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLC 63

Query: 453 HVKYLHGYSMKLG--LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
             + +H   +K G        + T + I YAKC  +E+A  LF   K+  +++ +W ++I
Sbjct: 64  TGQQIHAQILKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFS--KLRVRNVFSWAAII 121

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
               + G        + +M ++ + PD      +  AC   G ++  R  F      Y  
Sbjct: 122 GVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKAC---GALQWSR--FGRGVHGYVA 176

Query: 571 EPSQEH----YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +    H     +S+ ++ G+ G +D+AR++   +P + +A  W  L+
Sbjct: 177 KAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDR-NAVAWNALM 222


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/648 (31%), Positives = 329/648 (50%), Gaps = 50/648 (7%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD-------FISGEKIHA 155
           L +L+  G        +  + LQS     D    V+ S + LL        F++G ++HA
Sbjct: 10  LGHLASHGHLHDAFKTFSLLRLQSSSAVSDD--LVLHSAASLLSACVDVRAFLAGVQVHA 67

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKS 214
             +  G +    +   LV FY   +    NE   I      L    WN LI+   +N   
Sbjct: 68  HCISSGVEYHSVLVPKLVTFYSAFN--LHNEAQSIIENSDILHPLPWNVLIASYAKNELF 125

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E+    +K M  +G   D+ T  ++L++  E   +  GR+VH    VS +   L V  AL
Sbjct: 126 EEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNAL 185

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           +SMY +  ++  A+ LFD+M ++D V WN +I+ Y   G   E+ EL   M  SG    +
Sbjct: 186 ISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSV 245

Query: 335 FT-------------AIAAVSSISTMKN----------------------IEWGKQMHAN 359
            T              + A+  IS M+N                      I  GK++H  
Sbjct: 246 ITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGL 305

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            + +  D   +V N+LI MY +C+DL  A  +F   +  ++ +W+S+I GY   ++S EA
Sbjct: 306 AIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEA 365

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFI 478
             L  EM + G + + +T+ +ILP C  I  L+H K  H Y ++       + +  ++  
Sbjct: 366 SHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVD 425

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAK G I  A ++ D   +  +D +T+ S+I  Y   G+      L+ +M +S ++PD 
Sbjct: 426 VYAKSGKIVAAKQVSD--LMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDH 483

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +T + +L+AC ++ LV EG  +F +M+  YG  P  +H++ MV+L GRAG + +A++++ 
Sbjct: 484 VTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIH 543

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP+KP    W  LL+AC +H  T++ +  AEKL+ M+PEN G YVL++N+YAAAG W+ 
Sbjct: 544 NMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSK 603

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +A++RT +RD G+KK PGC+WI+       F   D S P+A   Y +L
Sbjct: 604 LAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLL 651



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/617 (23%), Positives = 269/617 (43%), Gaps = 93/617 (15%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL+ C + +      Q+HA + I  G+  + +L   L+  Y+   L + +Q +  +   
Sbjct: 48  SLLSACVDVRAFLAGVQVHA-HCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDI 106

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + L +  ++ + +K   +E+ +  YK+M  + + P   TYP V+++C   LD   G  +
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           H  +    + S   V +AL+  Y +    F N  G+ +R F  +  R    WN++I+   
Sbjct: 167 HGSIEVSSYKSSLYVCNALISMYKR----FRN-MGIARRLFDRMFERDAVSWNAVINCYA 221

Query: 210 QNGKSEKSFELFKLMRMEGAE-----------------------------------FDSG 234
             G   ++FELF  M   G E                                    D  
Sbjct: 222 SEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPV 281

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            +I  L++   + ++ LG+ +H +A+ S +    +V   L++MYSK   L  A ++F + 
Sbjct: 282 AMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQT 341

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
            +     WN +IS Y Q    +E+  LL  M+ +GF+ +  T  + +   + + N++ GK
Sbjct: 342 EENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGK 401

Query: 355 QMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           + H  +LR     DY + + NSL+D+Y +   +  A+++ D +  +  V+++S+I GY  
Sbjct: 402 EFHCYILRRKCFKDYTM-LWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGN 460

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH-GYSMKLGLNSLSS 471
             +   AL LF EM   G++ D VT++ +L AC       H K +H G  + + +     
Sbjct: 461 QGEGGVALALFKEMTRSGIKPDHVTVVAVLSAC------SHSKLVHEGERLFMKMQC--- 511

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
                   Y    C++                  ++ M+  Y + G  ++   +   M  
Sbjct: 512 -------EYGIRPCLQ-----------------HFSCMVDLYGRAGFLAKAKDIIHNMP- 546

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG--- 588
              +P   T+  LL AC   G  + G+   +++ E     P   +Y  + N+   AG   
Sbjct: 547 --YKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPG--YYVLIANMYAAAGSWS 602

Query: 589 HMDEARELVKDMPFKPD 605
            + E R +++D+  K D
Sbjct: 603 KLAEVRTIMRDLGVKKD 619


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 329/613 (53%), Gaps = 32/613 (5%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++K+L K G   + L + + M    ++P   TY  +++ C         + +HA +++  
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 162 FDSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
           F+  D  +G+ LV  Y+K     E  +   +   K++ S W ++I+   ++   +++   
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVS-WTAMIAAYARHEHGQEALGF 153

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  M+  G + +  T  ++L +  +L+ L  G   H   V   F  ++ V   L+ MY+K
Sbjct: 154 FYEMQDVGIQPNHFTFASILPACTDLEVL--GEF-HDEIVKGGFESNVFVGNGLVDMYAK 210

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR----------SGF 330
              +E A+ LFDKM  +D V WN MI+ Y Q+G  +++L+L   + +          +G+
Sbjct: 211 RGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGY 270

Query: 331 R--ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS------------DYQVSVHNSLI 376
               D+  A+     +     + W   M A  ++NGS            +  V   N++I
Sbjct: 271 AQCGDVENAVELFEKMPEQNLVSW-NTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVI 329

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
             + +   +  A K+F ++    VVSW++MI GY  + Q+  AL+LF +M++  ++ +  
Sbjct: 330 SGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTE 389

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T   +LPAC  +  LE     H   ++ G  S   V   +   YAKCG IE A ++FD  
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFD-- 447

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           ++  +D  + ++MI  YA +G   +  +L+ QM+ + ++PD +TF+G+L+AC +AGLV+E
Sbjct: 448 RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDE 507

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           GR  F  M   Y   P+ EHY  M++LLGRAG  DEA +L+  MP KPDA +WG LLSAC
Sbjct: 508 GRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSAC 567

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           + H+  +L E  A+ LI++ P+N   YVLLSNIYAAAG+W+ +  +R  ++DR +KK  G
Sbjct: 568 RTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLG 627

Query: 677 CSWIEIGKLVHEF 689
           CSWI I K VH F
Sbjct: 628 CSWIVIKKQVHAF 640



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 249/526 (47%), Gaps = 42/526 (7%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGL 80
           N   PH ++T+  SLL  C N + L     +HA  I      Q++ L + L+  Y  LG 
Sbjct: 58  NGIWPH-SSTYD-SLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGS 115

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  +++VF+ +   N + +  ++   ++    ++ L  + +M    + P   T+  ++ +
Sbjct: 116 LVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPA 175

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C+ L   + GE  H ++VK GF+S   VG+ LV+ Y K  G  E  + +  +  +     
Sbjct: 176 CTDLE--VLGE-FHDEIVKGGFESNVFVGNGLVDMYAK-RGCIEFARELFDKMPQRDVVS 231

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL---------RSTVEL-KSLE 250
           WN++I+  VQNG  E + +LF+    E  + D  T   ++          + VEL + + 
Sbjct: 232 WNAMIAGYVQNGLIEDALKLFQ----EIPKRDVITWNTMMAGYAQCGDVENAVELFEKMP 287

Query: 251 LGRIVHCVAVVSDFCKDLSVN-----------------TALLSMYSKLASLEDAKMLFDK 293
              +V    +++ + ++ SV                   A++S +++   +E+A  LF  
Sbjct: 288 EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKT 347

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M + + V WN MI+ Y Q+G  + +L+L   M     + +  T    + + + +  +E G
Sbjct: 348 MPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG 407

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            + H  V+R+G    V V N+L+ MY +C  +  ARK+FD ++ +   S S+MI GY  +
Sbjct: 408 NEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAIN 467

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
             S E+L LF +M+  G++ D VT + +L AC + G ++  +       +    + +  +
Sbjct: 468 GCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEH 527

Query: 474 TAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
               I    + GC + A +L ++  I   D   W S++SA   H +
Sbjct: 528 YGCMIDLLGRAGCFDEANDLINKMPI-KPDADMWGSLLSACRTHNN 572



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 211/430 (49%), Gaps = 44/430 (10%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           + L+    + G+  ++  + + M   G    S T  +LL+  +  KSL   +++H   + 
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 262 SDF-CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           + F C+D+S+   L+S+Y KL SL +A+ +FD+M  K+ V W  MI+AY +    +E+L 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M   G + + FT     S +    ++E   + H  +++ G +  V V N L+DMY 
Sbjct: 153 FFYEMQDVGIQPNHFT---FASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYA 209

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   +  AR++FD +  + VVSW++MI GYV +    +AL+LF E+     + D +T   
Sbjct: 210 KRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWNT 265

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT-------------------------- 474
           ++      G +E+   L     K+   +L S NT                          
Sbjct: 266 MMAGYAQCGDVENAVELF---EKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNV 322

Query: 475 ----AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
               A+   +A+ G +E A +LF  + +   ++++WN+MI+ Y+++G      KL+ QM+
Sbjct: 323 ISWNAVISGFAQNGQVEEALKLF--KTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQ 380

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
             D++P+  TF  +L AC    ++E+G    + +  S G++       ++V +  + G +
Sbjct: 381 MVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSI 439

Query: 591 DEARELVKDM 600
           ++AR++   M
Sbjct: 440 EDARKVFDRM 449


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/623 (32%), Positives = 334/623 (53%), Gaps = 17/623 (2%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ CE P  L+Q   IHA  ++   L  +++++++L+  Y+       S+ +F+ ++ 
Sbjct: 321 SILSGCEAPSLLEQGRQIHA-LVVESSLESHVVVANSLLGMYSRCRSWEDSRSLFDRMSV 379

Query: 94  PNSLLYGTILKNLSKFGEY-EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
            +S+ + TI+   S+   +    L +Y+ M  + + P       V+ +C  L +   G+ 
Sbjct: 380 RDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKL 439

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +HA V++ G +  D VG +LV  Y KC G     + +  R     +  WNS+I+ A Q  
Sbjct: 440 VHAHVIESGLEG-DLVGISLVNMYAKC-GTVGEARKVFDRINNRSRILWNSMIT-AYQEK 496

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
              ++  LF+ M+ EG   D  T + +L + V    LE GR +H   V S F  D+ V T
Sbjct: 497 DPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVAT 556

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL +MY+K  SL +A+ +FD M  +D V WN MI+AY Q    + ++ L   M   G R 
Sbjct: 557 ALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRP 616

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  T  + +++ S    +  G+Q+H+ +  +  +  + +   LI MY  C  LN AR+IF
Sbjct: 617 DKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIF 676

Query: 393 DSVKT------KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
           D++ +      + +  W+SMI  Y  H +  +AL L+ +M    VE D VT I++L AC 
Sbjct: 677 DNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACA 736

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++  L   + +H   M+ GL +  +V  +I   Y KCG  + A  +F  EK   KDI  W
Sbjct: 737 HLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASIVF--EKTKHKDISLW 794

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            ++I++YA+HG   Q   ++ +++Q  +    +TF+ +L+AC + GL+EEG   F  M E
Sbjct: 795 TALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHVGLIEEGCEFFASMAE 854

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
             G EP+ EH++ +V+LL RAGH+  A E +  MP   +  V   LL+AC++H + E A 
Sbjct: 855 -LGIEPNMEHHSCLVDLLARAGHLHTAEEFLSRMPVAANTIVLTALLAACRVHGDVERAR 913

Query: 627 LTAEKLISMEPENAGNYVLLSNI 649
             AEKL +++PE+   YV LSNI
Sbjct: 914 RVAEKLEALDPESEAPYVTLSNI 936



 Score =  239 bits (609), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 165/599 (27%), Positives = 298/599 (49%), Gaps = 16/599 (2%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSS-NL-IDSYANLGLLSLSQQVFNSI 91
           S+L+ CE P  L+Q   IHA  ++   L  +L +   NL I+ Y   G L  + Q F  +
Sbjct: 218 SILSGCEAPSLLEQGRQIHA-LVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARM 276

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              + + +  ++   S+ G++  +L ++++M L+   P   T+  ++  C        G 
Sbjct: 277 KRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGR 336

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI-SLAVQ 210
           +IHA VV+   +S   V ++L+  Y +C   +E+ + +  R        W+++I + + +
Sbjct: 337 QIHALVVESSLESHVVVANSLLGMYSRCR-SWEDSRSLFDRMSVRDSVSWSTIIMACSRE 395

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           +     +  L++ M  EG    +  L  +L +   L  L+ G++VH   + S    DL V
Sbjct: 396 DSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDL-V 454

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             +L++MY+K  ++ +A+ +FD+++++ R++WN MI+A YQ   P E+L L   M   G 
Sbjct: 455 GISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITA-YQEKDPHEALHLFREMQPEGV 513

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D  T +  +++     ++E G+ +H  ++ +G    V V  +L +MY +C  L  AR 
Sbjct: 514 SPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEARG 573

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           +FDS+  + VVSW++MI  YV       A+ L   M+LEG+  D  T  ++L AC +   
Sbjct: 574 VFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNR 633

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD----EEKIDSKDIITW 506
           L   + +H +  +  L +   + T +   YA CG +  A E+FD      +   +D+  W
Sbjct: 634 LVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLW 693

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            SMI+AY +HG++ +  +LY QM    V  D +TF+ +L AC +   + +G+ I   +  
Sbjct: 694 TSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMR 753

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             G         S+V + G+ G  DEA  + +    K D  +W  L+++   H   E A
Sbjct: 754 R-GLATDVAVANSIVFMYGKCGSFDEASIVFEKTKHK-DISLWTALIASYARHGHGEQA 810



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 170/582 (29%), Positives = 287/582 (49%), Gaps = 13/582 (2%)

Query: 72  IDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           I+ Y   G L  + Q F  +   + + +  ++   S+ G++  +L ++++M L+   P  
Sbjct: 52  INMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNS 111

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
            T+  ++  C        G +IHA VV+   +S   V ++L+  Y +C    ++      
Sbjct: 112 VTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFA 171

Query: 192 R-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           R K +D+ S W  +I    Q+GK   S +LF+ M +EG   +S T +++L        LE
Sbjct: 172 RMKRRDVVS-WTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLE 230

Query: 251 LGRIVHCVAVVSDFCK--DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
            GR +H + V S      D+ V    ++MY K   L+ A   F +M  +D V W +MI A
Sbjct: 231 QGRQIHALVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGA 290

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y Q G    SL+L   M+  G   +  T ++ +S       +E G+Q+HA V+ +  +  
Sbjct: 291 YSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESH 350

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD-QSLEALRLFSEMK 427
           V V NSL+ MY  C     +R +FD +  +  VSWS++I      D    +AL L+  M 
Sbjct: 351 VVVANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSML 410

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            EGV    + +  +L AC ++  L+  K +H + ++ GL     V  ++   YAKCG + 
Sbjct: 411 HEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEG-DLVGISLVNMYAKCGTVG 469

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A ++FD  +I+++  I WNSMI+AY +  D  +   L+ +M+   V PD ITF+ +L A
Sbjct: 470 EARKVFD--RINNRSRILWNSMITAY-QEKDPHEALHLFREMQPEGVSPDRITFMTVLNA 526

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           CVNA  +E GR I   + +S G+        ++ N+  + G + EAR +   M F+ D  
Sbjct: 527 CVNAADLENGRTIHTRIVDS-GFAADVRVATALFNMYAKCGSLGEARGVFDSMVFR-DVV 584

Query: 608 VWGPLLSACKMHSETE--LAELTAEKLISMEPENAGNYVLLS 647
            W  +++A     + E  ++   A +L  M P+ A    LL+
Sbjct: 585 SWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLN 626



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 9/397 (2%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G   D   +  LL +  +L +LE G+++      +    D+ V    ++MY K   
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L+ A   F +M  +D V W +MI AY Q G    SL+L   M+  G   +  T ++ +S 
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR-KIFDSVKTKTVVS 402
                 +E G+Q+HA V+ +  +  V V NSL+ MY  C     +R + F  +K + VVS
Sbjct: 121 CEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVS 180

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+ MI  Y    +   +++LF EM LEG   + VT ++IL  C     LE  + +H   +
Sbjct: 181 WTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV 240

Query: 463 KLGLNS---LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           +  L S   +  +N  I + Y KCGC++ A + F   ++  +D+++W  MI AY++ G +
Sbjct: 241 ESSLESHLDIGVLNLTINM-YVKCGCLDGAVQTF--ARMKRRDVVSWTVMIGAYSQDGKF 297

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           S   +L+ +M      P+ +TF+ +L+ C    L+E+GR I   + ES   E       S
Sbjct: 298 SLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVES-SLESHVVVANS 356

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           ++ +  R    +++R L   M  + D+  W  ++ AC
Sbjct: 357 LLGMYSRCRSWEDSRSLFDRMSVR-DSVSWSTIIMAC 392


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 189/597 (31%), Positives = 332/597 (55%), Gaps = 9/597 (1%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           E T   ++++CS + D + GE+IH  V+K GF+    VG +L+  Y +     E EK   
Sbjct: 10  EHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFN 69

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
               KDL+   N +I    + G  +++  +F  +   G + +  T  N++ +     ++E
Sbjct: 70  GVGCKDLRC-LNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC----NVE 124

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            G+ +H +AV        SV  A+++MY K   +E+A  +F  M+ K+ + W  +IS Y 
Sbjct: 125 EGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYT 184

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           ++G+ +++++  + +   G   D       +   S  KN++ G Q+H  V++ G    ++
Sbjct: 185 RNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDIN 244

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF-SEMKLE 429
           +  +LID+Y +C++   AR +F+ +  ++  S+++++ G++ +D + E   +F S+++L 
Sbjct: 245 IGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLA 304

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           G++ D V+   +L    N  +L   + LH YS+K G     SV+ A+   YAKCG +E A
Sbjct: 305 GIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDA 364

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            + F+   + + D I+WN++ISAY+ HG   +   LY +M++    PD IT L +L AC 
Sbjct: 365 YQAFN--SMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACT 422

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
            +GL E+G  +F  M+  YG +P  EHYA MV+LLGRAG++ +A +++   PF     +W
Sbjct: 423 YSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLW 482

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
             L++ CK+  +  L +L ++ L+ + P+ AG+YVL+SNIYA  G  +  +K+RT ++D 
Sbjct: 483 RTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVRTTMKDL 542

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKF 726
            L K  G SW+EI  +VH F A+   HP++  IY  L +L  E M G  +S  +L  
Sbjct: 543 KLSKEAGSSWVEIDNMVHYFVASGTDHPESIEIYARLDLLRNE-MRGIYDSKADLNL 598



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 210/407 (51%), Gaps = 11/407 (2%)

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G +F+  T + +L++  ++  + LG  +H   + S F +++ V T+L+SMYS+  + ++A
Sbjct: 5   GEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEA 64

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +F+ +  KD    N MI  Y ++G+ K ++ + + ++  G   + +T    +S+    
Sbjct: 65  EKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTC--- 121

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            N+E GKQ+H   ++ G   Q SV N++I MY +   +  A ++F  +  K ++SW+++I
Sbjct: 122 -NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALI 180

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY  +    +A+  F E++  GVE D   +  IL  C     L+    +HG  +KLG  
Sbjct: 181 SGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYP 240

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY- 526
              ++ TA+   YAKC   + A  +F+   +  +   ++N+++  + ++    +   ++ 
Sbjct: 241 CDINIGTALIDLYAKCKNFQSARTVFN--GLSPRSTASFNAILVGFIENDSNEEDPMVFL 298

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK-EMKESYGYEPSQEHYASMVNLLG 585
           +Q++ + ++PD ++F  LL+   N   + +GR +    +K  +    S  +  +++ +  
Sbjct: 299 SQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSN--ALITMYA 356

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           + G +++A +    M    D   W  ++SA  +H + E A L  +++
Sbjct: 357 KCGIVEDAYQAFNSMS-ANDCISWNAIISAYSLHGQGEKALLLYQEM 402



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 149/330 (45%), Gaps = 19/330 (5%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M   G + +  T +  + + S + ++  G+Q+H  V+++G +  V V  SLI MY    +
Sbjct: 1   MCEFGEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGN 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
            + A K+F+ V  K +   + MI  Y        A+ +F  +   G++ +  T  NI+  
Sbjct: 61  FDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIIST 120

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C     +E  K LHG ++K G+   +SV  A+   Y K G +E A  +F    ++ K++I
Sbjct: 121 C----NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMF--SVMNKKNLI 174

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD---LITFLGLLTACVNAGLVEE--GRI 559
           +W ++IS Y ++G   +    + +++   V  D   L T L   + C N  L  +  G +
Sbjct: 175 SWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLV 234

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           I        GY        ++++L  +  +   AR +   +  +  A     L+   +  
Sbjct: 235 I------KLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIEND 288

Query: 620 SETE--LAELTAEKLISMEPENAGNYVLLS 647
           S  E  +  L+  +L  ++P++     LLS
Sbjct: 289 SNEEDPMVFLSQLRLAGIKPDSVSFSRLLS 318



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 17/209 (8%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C+N     QIH   I L G   ++ + + LID YA       ++ VFN ++  ++  +  
Sbjct: 221 CKNLDLGTQIHGLVIKL-GYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNA 279

Query: 102 ILKNLSKFGEYEKTLLVY-KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           IL    +    E+  +V+  Q+ L  + P   ++  ++   +     + G  +HA  +K 
Sbjct: 280 ILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKT 339

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-------RWNSLISLAVQNGK 213
           GF     V +AL+  Y KC        G+++  ++   S        WN++IS    +G+
Sbjct: 340 GFAGHISVSNALITMYAKC--------GIVEDAYQAFNSMSANDCISWNAIISAYSLHGQ 391

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            EK+  L++ M  +G   D  T++ +L++
Sbjct: 392 GEKALLLYQEMEEKGFTPDEITILVILQA 420



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 5/112 (4%)

Query: 35  SFS-LLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           SFS LL+L  N   L   + +HA Y I  G   ++ +S+ LI  YA  G++  + Q FNS
Sbjct: 312 SFSRLLSLSANRASLVKGRGLHA-YSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNS 370

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
           +++ + + +  I+   S  G+ EK LL+Y++M  +   P E T   ++++C+
Sbjct: 371 MSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACT 422


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 294/548 (53%), Gaps = 42/548 (7%)

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           KD+ S WNSL+S   QNG  +++ E+F  M     E +S +   LL + V    +E    
Sbjct: 140 KDVVS-WNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEA-- 192

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
             C+   S    DL     L+  + +   L DA+ LFDKM  +D + WN MIS Y Q G 
Sbjct: 193 --CLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGG 250

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSS----------------ISTMKNIEWGKQMHA 358
             ++  L           D+FT  A VS                 +     + +   +  
Sbjct: 251 LSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG 306

Query: 359 NVLRNGSD-----------YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
            V     D             +S  N++I  Y +  D+  ARK FD +  +  VSW+++I
Sbjct: 307 YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAII 366

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            GY       EAL +F E+K +G  ++  T    L  C +I ALE  K +HG ++K+G  
Sbjct: 367 AGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           +   V  A+   Y KCG I+ A + F  E I+ KD+++WN+M++ YA+HG   Q   ++ 
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTF--EGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            MK + V+PD IT +G+L+AC + GL++ G   F  M + YG  P+ +HY  M++LLGRA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G ++EA++L+++MPF+P A  WG LL A ++H  TEL E  AE +  MEP+N+G YVLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           N+YAA+G+W    KMR+ +RD G++K PG SW+E+   +H F   D SHP+ + IY  L 
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLE 664

Query: 708 ILELEIME 715
            L+L++ E
Sbjct: 665 ELDLKMRE 672



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 222/464 (47%), Gaps = 33/464 (7%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  ++L+  YA  G +  +++VF+++   NS+ +  +L      G  E+  L++   
Sbjct: 140 KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF--- 196

Query: 123 ALQSMYPAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
                   E    + + S +CL+  F+  +K+     +  FD    V DA+   +     
Sbjct: 197 --------ESKSDWDLISWNCLMGGFVRKKKLGD--ARWLFDKM-PVRDAIS--WNTMIS 243

Query: 182 GFENEKGMIQ--RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           G+    G+ Q  R F +  +R    W +++S  VQNG  +++   F  M     E +  +
Sbjct: 244 GYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVS 299

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
              ++   V+ K +++ R +      S  C+++S    +++ Y ++  +  A+  FD M 
Sbjct: 300 YNAMIAGYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP 355

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            +D V W  +I+ Y QSG  +E+L + + + + G   +  T   A+S+ + +  +E GKQ
Sbjct: 356 QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQ 415

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   ++ G      V N+L+ MY +C  ++ A   F+ ++ K VVSW++M+ GY  H  
Sbjct: 416 IHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGF 475

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNT 474
             +AL +F  MK  GV+ D +T++ +L AC + G L+   +Y +  +   G+   S   T
Sbjct: 476 GRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYT 535

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +     + G +E A +L            +W +++ A   HG+
Sbjct: 536 CMIDLLGRAGRLEEAQDLIRNMPFQP-GAASWGALLGASRIHGN 578



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 192/447 (42%), Gaps = 49/447 (10%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +WN  IS  ++NG  + +  +F  M    +   +  +   LR++       L R +    
Sbjct: 51  KWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNS----KFNLARNLFDQM 106

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
                 +DL     +L+ Y +   L DA+ LFD M +KD V WN ++S Y Q+G+  E+ 
Sbjct: 107 PE----RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 320 E---------------LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG----------K 354
           E               LL   V +G    +  A     S S    I W           K
Sbjct: 163 EVFDNMPEKNSISWNGLLAAYVHNG---RIEEACLLFESKSDWDLISWNCLMGGFVRKKK 219

Query: 355 QMHANVLRNGSDYQVSVH-NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
              A  L +    + ++  N++I  Y +   L+ AR++FD   T+ V +W++M+ GYV +
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               EA   F EM  E  EV +  +I      V    ++  + L      +   ++SS N
Sbjct: 280 GMLDEAKTFFDEMP-EKNEVSYNAMI---AGYVQTKKMDIARELF---ESMPCRNISSWN 332

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           T I   Y + G I  A + FD   +  +D ++W ++I+ YA+ G + +   ++ ++KQ  
Sbjct: 333 TMI-TGYGQIGDIAQARKFFD--MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
              +  TF   L+ C +   +E G+ I  +  +  GY        +++ +  + G +DEA
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVK-MGYGTGCFVGNALLAMYFKCGSIDEA 448

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHS 620
            +  + +  K D   W  +L+    H 
Sbjct: 449 NDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 182/408 (44%), Gaps = 46/408 (11%)

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST-MKNIE 351
           ++ D D + WN  IS + ++G    +L +   M R        ++++  + IS  ++N +
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRR-------SSVSYNAMISGYLRNSK 95

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +   +  N+     +  +   N ++  Y     L  AR++FD +  K VVSW+S++ GY 
Sbjct: 96  F--NLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
            +    EA  +F  M     E + ++   +L A V+ G +E    L        L S + 
Sbjct: 154 QNGYVDEAREVFDNMP----EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNC 209

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +    F+   K G    A  LFD  K+  +D I+WN+MIS YA+ G  SQ  +L+ +   
Sbjct: 210 LMGG-FVRKKKLG---DARWLFD--KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT 263

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
            DV     T+  +++  V  G+++E +  F EM E      ++  Y +M+    +   MD
Sbjct: 264 RDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEK-----NEVSYNAMIAGYVQTKKMD 314

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE-NAGNYVLLSNIY 650
            AREL + MP + +   W  +++      +       A K   M P+ +  ++  +   Y
Sbjct: 315 IARELFESMPCR-NISSWNTMITGYGQIGDIA----QARKFFDMMPQRDCVSWAAIIAGY 369

Query: 651 AAAGKWNGVAKMRTFLRDRGL---KKTPGCSW--------IEIGKLVH 687
           A +G +     M   ++  G    + T GC+         +E+GK +H
Sbjct: 370 AQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 38/146 (26%)

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
            L   +  GL++ G   F  M E Y   P+ +HY  M++LLGR   ++E           
Sbjct: 770 FLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------- 818

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
                 G LL A ++H  TEL E  A+    M P+N+                 G++KM 
Sbjct: 819 ------GALLGASRIHGNTELGEKAAQMFFKMGPQNS-----------------GISKM- 854

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEF 689
              RD G++K PG SW E+   +H F
Sbjct: 855 ---RDVGVQKVPGYSWFEVQNKIHTF 877


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 304/563 (53%), Gaps = 41/563 (7%)

Query: 190 IQRKFKDLKSR----WNSLI---SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           ++  F+ L  R    WN LI   SL+   G + K++    +MR   A     TL+ +L+ 
Sbjct: 91  MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN--TMMRDFSANLTRVTLMTMLKL 148

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD------ 296
           +     + LG+ +H   +   F   L V + LL MY+ +  + DAK +F  + D      
Sbjct: 149 SSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMY 208

Query: 297 ------------------------KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
                                   KD V W  MI    Q+G  KE++E    M   G + 
Sbjct: 209 NSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKM 268

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D +   + + +   +  I  GKQ+HA ++R      + V ++LIDMYC+C+ L+ A+ +F
Sbjct: 269 DQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVF 328

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D +K K VVSW++M+ GY    ++ EA+++F +M+  G++ D  T+   + AC N+ +LE
Sbjct: 329 DRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLE 388

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
                HG ++  GL    +V+ ++   Y KCG I+ +  LF+E  ++ +D ++W +M+SA
Sbjct: 389 EGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE--MNVRDAVSWTAMVSA 446

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA+ G   +  +L+ +M Q  ++PD +T  G+++AC  AGLVE+G+  FK M   YG  P
Sbjct: 447 YAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVP 506

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           S  HY+ M++L  R+G ++EA   +  MPF PDA  W  LLSAC+     E+ +  AE L
Sbjct: 507 SIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESL 566

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           I ++P +   Y LLS+IYA+ GKW+ VA++R  +R++ +KK PG SWI+    +H F A 
Sbjct: 567 IELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSAD 626

Query: 693 DQSHPQADAIYTILGILELEIME 715
           D+S P  D IY  L  L  +I++
Sbjct: 627 DESSPYLDQIYAKLEELNNKIID 649



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 147/625 (23%), Positives = 278/625 (44%), Gaps = 81/625 (12%)

Query: 12  QSGHVKFLR------FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNL 65
           QS +VK +        P  +T  +    H+++L+            +AR +       NL
Sbjct: 21  QSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMK--------SSTYARRVFDRIPQPNL 72

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
              +NL+ +Y+  GL+S  +  F  +   + + +  +++  S  G     +  Y  M   
Sbjct: 73  FSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRD 132

Query: 126 -SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY--IKCDG- 181
            S      T   +++  S       G++IH QV+KLGF+S+  VG  L+  Y  + C   
Sbjct: 133 FSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISD 192

Query: 182 ------GFENEK--------------GMIQ------RKFKDLKSRWNSLISLAVQNGKSE 215
                 G ++                GMI+      R  +     W ++I    QNG ++
Sbjct: 193 AKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAK 252

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ E F+ M+++G + D     ++L +   L ++  G+ +H   + ++F   + V +AL+
Sbjct: 253 EAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALI 312

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY K   L  AK +FD+M  K+ V W  M+  Y Q+G  +E++++ + M RSG   D +
Sbjct: 313 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T   A+S+ + + ++E G Q H   + +G  + V+V NSL+ +Y +C D++ + ++F+ +
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM 432

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             +  VSW++M+  Y    +++E ++LF +M   G++ D VT+  ++ AC   G +E  +
Sbjct: 433 NVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ 492

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
                                   Y K         L   E      I  ++ MI  +++
Sbjct: 493 -----------------------RYFK---------LMTSEYGIVPSIGHYSCMIDLFSR 520

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
            G   +  +    M      PD I +  LL+AC N G +E G+   + + E   + P+  
Sbjct: 521 SGRLEEAMRFINGMP---FPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAG- 576

Query: 576 HYASMVNLLGRAGHMDEARELVKDM 600
            Y  + ++    G  D   +L + M
Sbjct: 577 -YTLLSSIYASKGKWDSVAQLRRGM 600


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 311/573 (54%), Gaps = 6/573 (1%)

Query: 146  DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
            D   GE+IHA V+K  F     V ++L+  Y K    +  EK  I     DL S WN++I
Sbjct: 909  DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLIS-WNTMI 967

Query: 206  SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV---ELKSLELGRIVHCVAVVS 262
            S   QN    ++   F+ +  +G + D  TL ++LR+     E +   LG  VH  A+  
Sbjct: 968  SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 263  DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                D  V+TAL+ +YSK   +++A+ L     D D   WN ++  Y +S   +++LE  
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 323  MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
              M   G   D  T   A+ +   + N++ GKQ+ A  ++ G +  + V + ++DMY +C
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 383  EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             D+  A ++F  +     V+W++MI GY+ +     AL ++  M++ GV+ D  T   ++
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 443  PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
             A   + ALE  K +H   +KL  +    V T++   Y KCG ++ A  +F   K+D + 
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF--RKMDVRK 1265

Query: 503  IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            ++ WN+M+   A+HG   +   L+  M+ + ++PD +TF+G+L+AC ++GL  E    F 
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFD 1325

Query: 563  EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
             M ++YG  P  EHY+ +V+ LGRAG + EA  ++  MPFK  A ++  LL AC+   + 
Sbjct: 1326 AMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDA 1385

Query: 623  ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            E A+  A+KL++++P ++  YVLLSNIYAA+ +W+ V   R  ++ + +KK PG SWI++
Sbjct: 1386 ETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDV 1445

Query: 683  GKLVHEFWAADQSHPQADAIYTILGILELEIME 715
               VH F   D+SHPQA  IY  +  L   I E
Sbjct: 1446 KNKVHLFVVDDRSHPQASLIYEKIEDLMKRIRE 1478



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 218/419 (52%), Gaps = 18/419 (4%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNL 106
            +QIHA  +I       + +S++L++ Y+  G++  +++ F  I SP  + + + T++ + 
Sbjct: 914  EQIHA-LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPELDLISWNTMISSY 970

Query: 107  SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD---FISGEKIHAQVVKLGF- 162
            ++     + +  ++ +    + P + T   V+R+CS   +   F  G ++H   +K G  
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 163  -DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
             DSF  V  AL++ Y K  G  +  + ++  K+    + WN+++   +++ KS K+ E F
Sbjct: 1031 NDSF--VSTALIDLYSK-GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 222  KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             LM   G   D  TL   ++++  L +L+ G+ +   A+   F  DL V++ +L MY K 
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 282  ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
              + +A  LF ++S  D V W  MIS Y ++G    +L +   M  SG + D +T    +
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 342  SSISTMKNIEWGKQMHANVLRNGSDYQVS--VHNSLIDMYCECEDLNCARKIFDSVKTKT 399
             + S +  +E GKQ+HANV++   DY +   V  SL+DMYC+C  +  A ++F  +  + 
Sbjct: 1208 KASSCLTALEQGKQIHANVVK--LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK 1265

Query: 400  VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYL 457
            VV W++M+ G   H    EAL LF  M+  G++ D VT I +L AC + G   E  KY 
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 162/666 (24%), Positives = 287/666 (43%), Gaps = 100/666 (15%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            ++ HAR I+  G   +  L++NLI  Y+  G L  ++QVF+  +  + + + +IL   ++
Sbjct: 631  KRAHAR-IVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 109  FGE--YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG-----EKIHAQVVKLG 161
            F +  YE  L  ++   L   +    T   +  +    L  +SG     E +H   VK+G
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITR--LTLAPLLKLCLLSGFVQVSETVHGYAVKIG 747

Query: 162  FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFEL 220
            F+    V  ALV  Y  C  G   +  ++  K  +  +  WN ++   V+N   +++   
Sbjct: 748  FELDLFVSGALVNIY--CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 221  FKLMRMEG--------------------------AE-----------FDSGTLI------ 237
            F      G                          AE           FD G+ I      
Sbjct: 806  FSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKK 865

Query: 238  ------------------NLLRSTVELKSL---------------ELGRIVHCVAVVSDF 264
                               LLRST+   S+               +LG  +H + + S F
Sbjct: 866  LTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSF 925

Query: 265  CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
               + V+ +L++MYSK   +  A+  F    + D + WN MIS+Y Q+    E++     
Sbjct: 926  APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRD 985

Query: 325  MVRSGFRADLFTAIAAVSSISTMKNIEW---GKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            ++R G + D FT  + + + ST    E+   G Q+H   ++ G      V  +LID+Y +
Sbjct: 986  LLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 382  CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
               ++ A  +        + SW++++ GY+  ++S +AL  FS M   G+ +D +T+   
Sbjct: 1046 GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATA 1105

Query: 442  LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
            + A   +  L+  K +  Y++KLG N+   V++ +   Y KCG +  A ELF E  I   
Sbjct: 1106 IKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE--ISRP 1163

Query: 502  DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
            D + W +MIS Y ++GD      +Y  M+ S V+PD  TF  L+ A      +E+G+ I 
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 562  KEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
              + +    + S +H+   S+V++  + G + +A  + + M  +     W  +L     H
Sbjct: 1224 ANVVK---LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQH 1279

Query: 620  SETELA 625
               + A
Sbjct: 1280 GHVDEA 1285



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 213/480 (44%), Gaps = 63/480 (13%)

Query: 139  RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
            RS   + D   G++ HA++V  G      + + L+  Y KC       +   +   +DL 
Sbjct: 619  RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 199  SRWNSLISLAVQNGKSE-----KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            + WNS+++   Q   S      + F LF L+R  G      TL  LL+  +    +++  
Sbjct: 679  T-WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE 737

Query: 254  IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
             VH  AV   F  DL V+ AL+++Y K   +  A++LFDKM ++D V+WN+M+ AY ++ 
Sbjct: 738  TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 314  FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
            F  E+L       RSGF  D       +  +++  ++   ++ HA         QV  + 
Sbjct: 798  FQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNS--DVSNNRKRHAE--------QVKAY- 846

Query: 374  SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
                          A K+F   +   + +W+  +  ++   Q + A+  F  +    +  
Sbjct: 847  --------------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH 892

Query: 434  DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
            D VT++ IL A V    L+  + +H   +K     +  V+ ++   Y+K G +  A + F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 494  DEEKIDSK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
                I+S   D+I+WN+MIS+YA++    +    +  + +  ++PD  T   +L AC   
Sbjct: 953  ----INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG 1008

Query: 552  GLVEEGRIIFKEMKESYGYEPSQEH-YA-------------SMVNLLGRAGHMDEARELV 597
               +EG          Y    SQ H YA             ++++L  + G MDEA  L+
Sbjct: 1009 ---DEGE---------YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 34/380 (8%)

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           RS + +  L+LG+  H   V S    D  +   L++MYSK  SL  A+ +FDK SD+D V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 301 VWNIMISAYYQ---SGFPK--ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            WN +++AY Q   S +    E   L   +   GF     T    +        ++  + 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   ++ G +  + V  +L+++YC+   +  AR +FD +  +  V W+ M+K YV +  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EALR FS     G   DF  +      CV IG               G+NS  S N  
Sbjct: 799 QDEALRFFSAFHRSGFFPDFSNL-----HCV-IG---------------GVNSDVSNNRK 837

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
                 K   ++M    FD+      +I  WN  ++ +   G        +  + +S + 
Sbjct: 838 RHAEQVKAYAMKMFP--FDQ----GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIG 891

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
            D +T + +L+A V A  ++ G  I   + +S  + P      S++N+  +AG +  A +
Sbjct: 892 HDSVTLVIILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEK 950

Query: 596 LVKDMPFKPDARVWGPLLSA 615
              + P + D   W  ++S+
Sbjct: 951 TFINSP-ELDLISWNTMISS 969


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 181/491 (36%), Positives = 278/491 (56%), Gaps = 40/491 (8%)

Query: 252 GRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           G  +HC A+   F  + + V  AL+  Y+   SL+DA  +FD+M ++D V W  ++  Y 
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220

Query: 311 QSGFPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
           ++G   E+  L   MV   G R +  T +AAVS+I  M  + +G  +H  V   G    V
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSV 280

Query: 370 SVHNSLIDM-------------------------------YCECEDLNCARKIFDSVKTK 398
           ++ N+L+DM                               Y +C DL  A ++F  +  +
Sbjct: 281 NLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRR 340

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VVSWS MI  Y   +Q  EA+ LF EM   GV+    T++++L AC  +G L+  ++++
Sbjct: 341 NVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIY 400

Query: 459 G---YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
                S K+GL    ++  A+   +AKCG +  A +LFDE  +  +++++WN+MI A+A 
Sbjct: 401 ENYIVSNKIGLTV--NLGNALIDMFAKCGDVGEASKLFDE--MAERNVVSWNTMIMAHAV 456

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           HG   +  +L+ Q+K  ++ PD ITFLGLL +C ++GLV EGR  FKEM+  Y  EP  E
Sbjct: 457 HGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVE 516

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HYA M++LLG+ G ++EA E+ + MP + D   WG LL+AC+MH   E+    A+KL+ +
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVEL 576

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           +P ++G YVL+S IYA+  KW+ V  +R  +RDRG+KK PGCS IE+    H+F  AD S
Sbjct: 577 DPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVS 636

Query: 696 HPQADAIYTIL 706
           H  ++ IY+ L
Sbjct: 637 HACSEEIYSAL 647



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 126/552 (22%), Positives = 251/552 (45%), Gaps = 50/552 (9%)

Query: 13  SGHVKFLRFPANQTRPHMTATHSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNL 71
           S     L  PA  T  ++  TH   SLL  C + + L Q+HA  + + GL  +   +S L
Sbjct: 15  SAAAAVLPRPAWNTNRNLVVTHPLLSLLESCASFRRLLQLHA-LLTVTGLAAHRFPASRL 73

Query: 72  IDSYANLGLLSLSQQVFNSI----TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           + ++  L            +      PN+ + GT+++   +     + L +++++    +
Sbjct: 74  L-AFCALSTPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRL 132

Query: 128 YPAEDTYPFVIRSCSCLLDF------ISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCD 180
                T+ F +++ +   +         GE IH   +K GF      VG+ALV FY    
Sbjct: 133 PADARTFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHK 192

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINL 239
              +  K   +   +D+ S W +L+    + G +++++ LF +++ + G   ++ TL+  
Sbjct: 193 SLDDAGKVFDEMPERDVVS-WTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAA 251

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           + +  ++  L  G ++H         + ++++ AL+ M+ K   +  A+ +FD M  KD 
Sbjct: 252 VSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDV 311

Query: 300 VVWNIMISAYYQSG-------------------------------FPKESLELLMCMVRS 328
             W  M++AY + G                                P+E++ L   M+ +
Sbjct: 312 YSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAA 371

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHAN-VLRNGSDYQVSVHNSLIDMYCECEDLNC 387
           G      T ++ +S+ + +  ++ G+ ++ N ++ N     V++ N+LIDM+ +C D+  
Sbjct: 372 GVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGE 431

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A K+FD +  + VVSW++MI  +  H QS EA+RLF ++K E +  D +T + +L +C +
Sbjct: 432 ASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSH 491

Query: 448 IGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            G + E  +Y     M   +         +     K G +E A E+     +++ D   W
Sbjct: 492 SGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEA-DEAGW 550

Query: 507 NSMISAYAKHGD 518
            ++++A   HG+
Sbjct: 551 GALLNACRMHGN 562


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 311/573 (54%), Gaps = 6/573 (1%)

Query: 146  DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
            D   GE+IHA V+K  F     V ++L+  Y K    +  EK  I     DL S WN++I
Sbjct: 909  DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLIS-WNTMI 967

Query: 206  SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV---ELKSLELGRIVHCVAVVS 262
            S   QN    ++   F+ +  +G + D  TL ++LR+     E +   LG  VH  A+  
Sbjct: 968  SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 263  DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                D  V+TAL+ +YSK   +++A+ L     D D   WN ++  Y +S   +++LE  
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 323  MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
              M   G   D  T   A+ +   + N++ GKQ+ A  ++ G +  + V + ++DMY +C
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 383  EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             D+  A ++F  +     V+W++MI GY+ +     AL ++  M++ GV+ D  T   ++
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 443  PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
             A   + ALE  K +H   +KL  +    V T++   Y KCG ++ A  +F   K+D + 
Sbjct: 1208 KASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF--RKMDVRK 1265

Query: 503  IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            ++ WN+M+   A+HG   +   L+  M+ + ++PD +TF+G+L+AC ++GL  E    F 
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFD 1325

Query: 563  EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
             M ++YG  P  EHY+ +V+ LGRAG + EA  ++  MPFK  A ++  LL AC+   + 
Sbjct: 1326 AMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDA 1385

Query: 623  ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            E A+  A+KL++++P ++  YVLLSNIYAA+ +W+ V   R  ++ + +KK PG SWI++
Sbjct: 1386 ETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDV 1445

Query: 683  GKLVHEFWAADQSHPQADAIYTILGILELEIME 715
               VH F   D+SHPQA  IY  +  L   I E
Sbjct: 1446 KNKVHLFVVDDRSHPQASLIYEKIEDLMKRIRE 1478



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 218/419 (52%), Gaps = 18/419 (4%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNL 106
            +QIHA  +I       + +S++L++ Y+  G++  +++ F  I SP  + + + T++ + 
Sbjct: 914  EQIHA-LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF--INSPELDLISWNTMISSY 970

Query: 107  SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD---FISGEKIHAQVVKLGF- 162
            ++     + +  ++ +    + P + T   V+R+CS   +   F  G ++H   +K G  
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 163  -DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
             DSF  V  AL++ Y K  G  +  + ++  K+    + WN+++   +++ KS K+ E F
Sbjct: 1031 NDSF--VSTALIDLYSK-GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 222  KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
             LM   G   D  TL   ++++  L +L+ G+ +   A+   F  DL V++ +L MY K 
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKC 1147

Query: 282  ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
              + +A  LF ++S  D V W  MIS Y ++G    +L +   M  SG + D +T    +
Sbjct: 1148 GDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLI 1207

Query: 342  SSISTMKNIEWGKQMHANVLRNGSDYQVS--VHNSLIDMYCECEDLNCARKIFDSVKTKT 399
             + S +  +E GKQ+HANV++   DY +   V  SL+DMYC+C  +  A ++F  +  + 
Sbjct: 1208 KASSCLTALEQGKQIHANVVK--LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK 1265

Query: 400  VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYL 457
            VV W++M+ G   H    EAL LF  M+  G++ D VT I +L AC + G   E  KY 
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 162/666 (24%), Positives = 287/666 (43%), Gaps = 100/666 (15%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            ++ HAR I+  G   +  L++NLI  Y+  G L  ++QVF+  +  + + + +IL   ++
Sbjct: 631  KRAHAR-IVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 109  FGE--YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG-----EKIHAQVVKLG 161
            F +  YE  L  ++   L   +    T   +  +    L  +SG     E +H   VK+G
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITR--LTLAPLLKLCLLSGFVQVSETVHGYAVKIG 747

Query: 162  FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFEL 220
            F+    V  ALV  Y  C  G   +  ++  K  +  +  WN ++   V+N   +++   
Sbjct: 748  FELDLFVSGALVNIY--CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 221  FKLMRMEG--------------------------AE-----------FDSGTLI------ 237
            F      G                          AE           FD G+ I      
Sbjct: 806  FSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKK 865

Query: 238  ------------------NLLRSTVELKSL---------------ELGRIVHCVAVVSDF 264
                               LLRST+   S+               +LG  +H + + S F
Sbjct: 866  LTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSF 925

Query: 265  CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
               + V+ +L++MYSK   +  A+  F    + D + WN MIS+Y Q+    E++     
Sbjct: 926  APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRD 985

Query: 325  MVRSGFRADLFTAIAAVSSISTMKNIEW---GKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            ++R G + D FT  + + + ST    E+   G Q+H   ++ G      V  +LID+Y +
Sbjct: 986  LLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 382  CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
               ++ A  +        + SW++++ GY+  ++S +AL  FS M   G+ +D +T+   
Sbjct: 1046 GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATA 1105

Query: 442  LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
            + A   +  L+  K +  Y++KLG N+   V++ +   Y KCG +  A ELF E  I   
Sbjct: 1106 IKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGE--ISRP 1163

Query: 502  DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
            D + W +MIS Y ++GD      +Y  M+ S V+PD  TF  L+ A      +E+G+ I 
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 562  KEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
              + +    + S +H+   S+V++  + G + +A  + + M  +     W  +L     H
Sbjct: 1224 ANVVK---LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAMLLGLAQH 1279

Query: 620  SETELA 625
               + A
Sbjct: 1280 GHVDEA 1285



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 213/480 (44%), Gaps = 63/480 (13%)

Query: 139  RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
            RS   + D   G++ HA++V  G      + + L+  Y KC       +   +   +DL 
Sbjct: 619  RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 199  SRWNSLISLAVQNGKSE-----KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            + WNS+++   Q   S      + F LF L+R  G      TL  LL+  +    +++  
Sbjct: 679  T-WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSE 737

Query: 254  IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
             VH  AV   F  DL V+ AL+++Y K   +  A++LFDKM ++D V+WN+M+ AY ++ 
Sbjct: 738  TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 314  FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
            F  E+L       RSGF  D       +  +++  ++   ++ HA         QV  + 
Sbjct: 798  FQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNS--DVSNNRKRHAE--------QVKAY- 846

Query: 374  SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
                          A K+F   +   + +W+  +  ++   Q + A+  F  +    +  
Sbjct: 847  --------------AMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGH 892

Query: 434  DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
            D VT++ IL A V    L+  + +H   +K     +  V+ ++   Y+K G +  A + F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 494  DEEKIDSK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
                I+S   D+I+WN+MIS+YA++    +    +  + +  ++PD  T   +L AC   
Sbjct: 953  ----INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG 1008

Query: 552  GLVEEGRIIFKEMKESYGYEPSQEH-YA-------------SMVNLLGRAGHMDEARELV 597
               +EG          Y    SQ H YA             ++++L  + G MDEA  L+
Sbjct: 1009 ---DEGE---------YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLL 1056



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 34/380 (8%)

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           RS + +  L+LG+  H   V S    D  +   L++MYSK  SL  A+ +FDK SD+D V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 301 VWNIMISAYYQ---SGFPK--ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            WN +++AY Q   S +    E   L   +   GF     T    +        ++  + 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   ++ G +  + V  +L+++YC+   +  AR +FD +  +  V W+ M+K YV +  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             EALR FS     G   DF  +      CV IG               G+NS  S N  
Sbjct: 799 QDEALRFFSAFHRSGFXPDFSNL-----HCV-IG---------------GVNSDVSNNRK 837

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
                 K   ++M    FD+      +I  WN  ++ +   G        +  + +S + 
Sbjct: 838 RHAEQVKAYAMKMFP--FDQ----GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIG 891

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
            D +T + +L+A V A  ++ G  I   + +S  + P      S++N+  +AG +  A +
Sbjct: 892 HDSVTLVIILSAAVGADDLDLGEQIHALVIKS-SFAPVVPVSNSLMNMYSKAGVVYAAEK 950

Query: 596 LVKDMPFKPDARVWGPLLSA 615
              + P + D   W  ++S+
Sbjct: 951 TFINSP-ELDLISWNTMISS 969


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 278/456 (60%), Gaps = 8/456 (1%)

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           +D  + T L+ MYS L S++ A+ +FDK   +   VWN +  A   +G  +E L L   M
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM 169

Query: 326 VRSGFRADLFTAI----AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            R G  +D FT      A V+S  T+ ++  GK++HA++ R G    V +  +L+DMY  
Sbjct: 170 NRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR 229

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE--VDFVTII 439
              ++ A  +F  +  + VVSWS+MI  Y  + ++ EALR F EM  E  +   + VT++
Sbjct: 230 FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMV 289

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC ++ ALE  K +HGY ++ GL+S+  V +A+   Y +CG +E+   +FD  ++ 
Sbjct: 290 SVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFD--RMH 347

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D+++WNS+IS+Y  HG   +  +++ +M  +   P  +TF+ +L AC + GLVEEG+ 
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +F+ M   +G +P  EHYA MV+LLGRA  +DEA ++V+DM  +P  +VWG LL +C++H
Sbjct: 408 LFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              ELAE  + +L ++EP+NAGNYVLL++IYA A  W+ V +++  L  RGL+K PG  W
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +E+ + ++ F + D+ +P  + I+  L  L  ++ E
Sbjct: 528 MEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKE 563



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           ++H R+I+ +G  Q+  L++ LI  Y++LG +  +++VF+        ++  + + L+  
Sbjct: 98  RVH-RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLA 156

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLD-FISGEKIHAQVVKLGFDSF 165
           G  E+ L +Y +M    +     TY +V+++C    C ++  + G++IHA + + G+ S 
Sbjct: 157 GHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216

Query: 166 DDVGDALVEFYIK---CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
             +   LV+ Y +    D       GM  R        W+++I+   +NGK+ ++   F+
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS----WSAMIACYAKNGKAFEALRTFR 272

Query: 223 LMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
            M  E  +   +S T++++L++   L +LE G+++H   +       L V +AL++MY +
Sbjct: 273 EMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              LE  + +FD+M D+D V WN +IS+Y   G+ K+++++   M+ +G      T ++ 
Sbjct: 333 CGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV 392

Query: 341 VSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
           + + S    +E GK++   + R+ G   Q+  +  ++D+      L+ A K+   ++T+ 
Sbjct: 393 LGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 400 VVS-WSSMIKGYVTH 413
               W S++     H
Sbjct: 453 GPKVWGSLLGSCRIH 467



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 168/362 (46%), Gaps = 11/362 (3%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++++L K G+ ++ + V  Q +     P++ TY  +I  C          ++H  ++  G
Sbjct: 52  LIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRHILDNG 107

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
            D    +   L+  Y    G  +  + +  +  K     WN+L       G  E+   L+
Sbjct: 108 SDQDPFLATKLIGMYSDL-GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166

Query: 222 KLMRMEGAEFDSGTLINLLRSTV----ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
             M   G E D  T   +L++ V     +  L  G+ +H       +   + + T L+ M
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDM 226

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR--SGFRADLF 335
           Y++   ++ A  +F  M  ++ V W+ MI+ Y ++G   E+L     M+R       +  
Sbjct: 227 YARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSV 286

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T ++ + + +++  +E GK +H  +LR G D  + V ++L+ MY  C  L   +++FD +
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM 346

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             + VVSW+S+I  Y  H    +A+++F EM   G     VT +++L AC + G +E  K
Sbjct: 347 HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK 406

Query: 456 YL 457
            L
Sbjct: 407 RL 408



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 144/286 (50%), Gaps = 10/286 (3%)

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++H ++L NGSD    +   LI MY +   ++ ARK+FD  + +T+  W+++ +      
Sbjct: 98  RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAG 157

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACV----NIGALEHVKYLHGYSMKLGLNSLS 470
              E L L+ +M   GVE D  T   +L ACV     +  L   K +H +  + G +S  
Sbjct: 158 HGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHV 217

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM- 529
            + T +   YA+ GC++ A  +F    +  +++++W++MI+ YAK+G   +  + + +M 
Sbjct: 218 YIMTTLVDMYARFGCVDYASYVFGGMPV--RNVVSWSAMIACYAKNGKAFEALRTFREMM 275

Query: 530 -KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
            +  D  P+ +T + +L AC +   +E+G++I   +    G +      +++V + GR G
Sbjct: 276 RETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR-GLDSILPVISALVTMYGRCG 334

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
            + E  + V D     D   W  L+S+  +H   + A    E++++
Sbjct: 335 KL-EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA 379


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/468 (38%), Positives = 276/468 (58%), Gaps = 3/468 (0%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           + NLL S    +SL  G  +H   +         V+  L+++YSK      +  +FD+  
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            K    W+ +ISA+ Q+  P  +L+    M+  G R D     +A  +   ++  + GK 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   ++ G    V V +SL+DMY +C ++  AR +FD +  + VVSWS MI GY   D 
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            +EAL LF +  +E V+V+  T  +++  C +   LE  K +HG  +K+  +S S V +A
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSA 267

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+KCG IE A ++FDE  I ++++  WNSM+ A A+H    + F L+ +M    ++
Sbjct: 268 LISLYSKCGVIEGAYQVFDE--IPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+ I+FL +L AC +AGLVE+GR  F  M++ YG EP  EHYAS+V+LLGRAG + EA  
Sbjct: 326 PNFISFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVS 384

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           ++K MP +P   VWG LL+ C++H +TE+A   A++++ M+  ++G +VLLSN YAAAG+
Sbjct: 385 VIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGR 444

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           +   A+MR  LRDRG+KK  G SW+E G  VH F A D+SH +   IY
Sbjct: 445 YEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 156/318 (49%), Gaps = 7/318 (2%)

Query: 141 CSCLLDFI------SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           C+ LL F        G ++HA ++K G  +   V   L+  Y K      + + +     
Sbjct: 29  CNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQ-VFDETP 87

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           K   + W+S+IS   QN     + + F+ M  +G   D     +  ++   L+  ++G+ 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           VHC+AV + +  D+ V ++L+ MY+K   + DA+ LFD+M +++ V W+ MI  Y Q   
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E+L L    +      + FT  + +   S+   +E GK +H   L+   D    V ++
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSA 267

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI +Y +C  +  A ++FD + T+ +  W+SM+     H  +     LF EM   G++ +
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327

Query: 435 FVTIINILPACVNIGALE 452
           F++ +++L AC + G +E
Sbjct: 328 FISFLSVLYACSHAGLVE 345



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 171/375 (45%), Gaps = 17/375 (4%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+HA +I+  GL    ++S NLI+ Y+   L   S QVF+     +S  + +++   S F
Sbjct: 46  QLHA-HILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI---SAF 101

Query: 110 GEYEKTLLV---YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            + E  LL    +++M    + P +  YP   ++C  L     G+ +H   VK G+    
Sbjct: 102 AQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDV 161

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            VG +LV+ Y KC      E G  +  F ++  R    W+ +I    Q     ++  LFK
Sbjct: 162 FVGSSLVDMYAKC-----GEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFK 216

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
              +E  + +  T  +++R       LELG+++H + +   F     V +AL+S+YSK  
Sbjct: 217 QALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCG 276

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +E A  +FD++  ++  +WN M+ A  Q    +    L   M   G + +  + ++ + 
Sbjct: 277 VIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLY 336

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S    +E G++  + +   G + +   + SL+D+      L  A  +   +  +   S
Sbjct: 337 ACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTES 396

Query: 403 -WSSMIKGYVTHDQS 416
            W +++ G   H  +
Sbjct: 397 VWGALLTGCRIHKDT 411



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           E ++  I N+L +     +L     LH + +K GL ++  V+  +   Y+K      + +
Sbjct: 22  EQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQ 81

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FDE     K   TW+S+ISA+A++       + + +M    VRPD   +     AC   
Sbjct: 82  VFDETP--KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFL 139

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
              + G+ +   +    GY       +S+V++  + G + +AR L  +MP
Sbjct: 140 RRSDVGKSV-HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 197/640 (30%), Positives = 336/640 (52%), Gaps = 13/640 (2%)

Query: 50  QIHARYIILH----GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +I A  I  H    G +Q + L++  +D Y  LG +  +Q +F  +   + + +  ++  
Sbjct: 69  KIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICG 128

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S+ G     L V+ QM  +   P + T   ++ SC        G+ IH   +K G D  
Sbjct: 129 YSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLD 188

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V +AL   Y KC    +  + + +  F+  +  WN++I    QNG  +++  +FK M+
Sbjct: 189 CRVKNALTSMYAKC-ADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQ 247

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            E  E +  T+I+LL +   L S       HC  + + F  D SV T+L+  Y+   ++E
Sbjct: 248 KERVEVNYVTIISLLSANAHLDS------THCYVIKTGFATDASVITSLVCSYAGCGNIE 301

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A +L++ M  ++ V    MIS Y + G     +E    M++   + D    ++ +   +
Sbjct: 302 SAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFT 361

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
               I  G  +HA  L+ G      V N LI MY +  D+     +F  +  K ++SW+S
Sbjct: 362 DPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNS 421

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I   +   ++ +A+ LF +M++ G   D +TI ++L  C  +G L+  + LH Y ++  
Sbjct: 422 VISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNN 481

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L+    + TA+   Y KCG +E A  +F  + I    + TWN+MIS Y   G   +    
Sbjct: 482 LDMEDFLETALVDMYIKCGRLESAERVF--KSIKEPCLATWNTMISGYGLSGHEHRALSC 539

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           Y++M++  ++PD ITFLG+L+AC + GLV EG+  F+ M+E +G  P  +H A MV+LL 
Sbjct: 540 YSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLS 599

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG ++EA   VK+M  +PD+ +WG LL++C +H E +L E  A++L+ ++  + G YVL
Sbjct: 600 RAGFLEEAVIFVKNMEVEPDSAIWGALLTSCCIHQELKLGECLAKRLLLLDYYSGGLYVL 659

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           +SN+YA+ G+W+ VA++R  ++D G   + G S IE+  L
Sbjct: 660 MSNLYASKGRWDDVARVRKMMKDTGGDGSSGISLIEVSSL 699


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 301/564 (53%), Gaps = 14/564 (2%)

Query: 150 GEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNSLI 205
           G  +HA++VK   DS     + + L+  Y K D     E   +  +    ++   W SL+
Sbjct: 25  GRVVHARIVKT-LDSPPPPFLANYLINMYSKLD---HPESARLVLRLTPARNVVSWTSLV 80

Query: 206 SLAVQNGK-SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           S   QNG  S   FE F+ MR EG   +  T   + ++   L+    G+ +H +AV    
Sbjct: 81  SGLAQNGHFSTALFEFFE-MRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGR 139

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ V  +   MY K    +DA+ LFD++ +++   WN  IS     G PKE++E  + 
Sbjct: 140 ILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIE 199

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
             R G + +  T    +++ S    ++ G QMH  V R+G D  VSV+N LID Y +C+ 
Sbjct: 200 FRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQ 259

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  +  IF  +  K  VSW S++  YV + +  +A  L+   + E VE     I ++L A
Sbjct: 260 IRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSA 319

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C  +  LE  + +H +++K  +     V +A+   Y KCGCIE + + FDE  +  K+++
Sbjct: 320 CAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDE--MPEKNLV 377

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQM--KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           T NS+I  YA  G       L+  M  +     P+ +TF+ LL+AC  AG VE G  IF 
Sbjct: 378 TLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFD 437

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            MK +YG EP  EHY+ +V++LGRAG +++A E +K MP KP   VWG L +AC+MH + 
Sbjct: 438 SMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKP 497

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            L  L AE L  ++P+++GN+VLLSN +AAAG+W     +R  ++  G+KK  G SWI +
Sbjct: 498 HLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITV 557

Query: 683 GKLVHEFWAADQSHPQADAIYTIL 706
              VH F A D+SH     I T+L
Sbjct: 558 KNQVHAFQAKDRSHKMNKEIQTML 581



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 229/472 (48%), Gaps = 9/472 (1%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +HAR +          L++ LI+ Y+ L     ++ V     + N + + +++  L++ G
Sbjct: 28  VHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNG 87

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDV 168
            +   L  + +M  + + P + T+P V ++ + L   ++G++IHA  VK G   D F  V
Sbjct: 88  HFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVF--V 145

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G +  + Y K     +  K   +   ++L++ WN+ IS +V +G+ +++ E F   R  G
Sbjct: 146 GCSAFDMYCKTRLRDDARKLFDEIPERNLET-WNAYISNSVTDGRPKEAIEAFIEFRRIG 204

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            + +S T    L +  +   L+LG  +H +   S F  D+SV   L+  Y K   +  ++
Sbjct: 205 GQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSE 264

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           ++F +M  K+ V W  +++AY Q+   +++  L +   +       F   + +S+ + M 
Sbjct: 265 IIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMA 324

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +E G+ +HA+ ++   +  + V ++L+DMY +C  +  + + FD +  K +V+ +S+I 
Sbjct: 325 GLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIG 384

Query: 409 GYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEH-VKYLHGYSMKLG 465
           GY    Q   AL LF +M   G     +++T +++L AC   GA+E+ +K         G
Sbjct: 385 GYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYG 444

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           +   +   + I     + G +E A E   +  I    I  W ++ +A   HG
Sbjct: 445 IEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPT-ISVWGALQNACRMHG 495



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 197/422 (46%), Gaps = 5/422 (1%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           LL++ +   S+ LGR+VH   V + D      +   L++MYSKL   E A+++      +
Sbjct: 12  LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           + V W  ++S   Q+G    +L     M R G   + FT      ++++++    GKQ+H
Sbjct: 72  NVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIH 131

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++ G    V V  S  DMYC+    + ARK+FD +  + + +W++ I   VT  +  
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPK 191

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EA+  F E +  G + + +T    L AC +   L+    +HG   + G ++  SV   + 
Sbjct: 192 EAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLI 251

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y KC  I  +  +F E  +  K+ ++W S+++AY ++ +  +   LY + ++  V   
Sbjct: 252 DFYGKCKQIRSSEIIFAE--MGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETS 309

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
                 +L+AC     +E GR I     ++   E +    +++V++ G+ G ++++ +  
Sbjct: 310 DFMISSVLSACAGMAGLELGRSIHAHAVKAC-VERNIFVGSALVDMYGKCGCIEDSEQAF 368

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
            +MP K +      L+       + ++A    E +       A NY+   ++ +A  +  
Sbjct: 369 DEMPEK-NLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAG 427

Query: 658 GV 659
            V
Sbjct: 428 AV 429



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 9/285 (3%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
            LN C +   L    Q+H   +   G   ++ + + LID Y     +  S+ +F  +   
Sbjct: 215 FLNACSDGLLLDLGMQMHG-LVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMK 273

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N++ + +++    +  E EK  ++Y +   + +  ++     V+ +C+ +     G  IH
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIH 333

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A  VK   +    VG ALV+ Y KC    ++E+   +   K+L +  NSLI      G+ 
Sbjct: 334 AHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVT-LNSLIGGYAHQGQV 392

Query: 215 EKSFELFKLM--RMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVN 271
           + +  LF+ M  R  G   +  T ++LL +     ++E G +I   +             
Sbjct: 393 DMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHY 452

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISAYYQSGFP 315
           + ++ M  +   +E A     KM  K  + VW  + +A    G P
Sbjct: 453 SCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKP 497


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 279/456 (61%), Gaps = 8/456 (1%)

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           +D  + T L+ MYS L S++ A+ +FDK   +   VWN +  A   +G  +E L L   M
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM 169

Query: 326 VRSGFRADLFTAI----AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
            R G  +D FT      A V+S  T  ++  GK++HA++ R G +  V +  +L+DMY  
Sbjct: 170 NRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYAR 229

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE--VDFVTII 439
              ++ A  +F+ +  + VVSWS+MI  Y  + ++ EALR F EM  E  +   + VT++
Sbjct: 230 FGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMV 289

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC ++ ALE  + +HGY ++ GL+S+  V +A+   Y +CG +++   +FD  ++ 
Sbjct: 290 SVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFD--RMH 347

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D+++WNS+IS+Y  HG   +  +++ +M  +   P  +TF+ +L AC + GLVEEG+ 
Sbjct: 348 DRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +F+ M   +G +P  EHYA MV+LLGRA  +DEA ++V+DM  +P  +VWG LL +C++H
Sbjct: 408 LFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              ELAE  + +L ++EP+NAGNYVLL++IYA A  W+ V +++  L  RGL+K PG  W
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           +E+ + ++ F + D+ +P  + I+  L  L  ++ E
Sbjct: 528 MEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKE 563



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 194/375 (51%), Gaps = 16/375 (4%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           ++H R+I+ +G  Q+  L++ LI  Y++LG +  +++VF+        ++  + + L+  
Sbjct: 98  RVH-RHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLA 156

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC---SCLLDFIS-GEKIHAQVVKLGFDSF 165
           G  E+ L +Y +M    +     TY +V+++C    C  D ++ G++IHA + + G++S 
Sbjct: 157 GHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSH 216

Query: 166 DDVGDALVEFYIK---CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
             +   LV+ Y +    D       GM  R        W+++I+   +NGK+ ++   F+
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVS----WSAMIACYAKNGKAFEALRTFR 272

Query: 223 LMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
            M  E  +   +S T++++L++   L +LE GR++H   +       L V +AL++MY +
Sbjct: 273 EMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              L+  + +FD+M D+D V WN +IS+Y   G+ ++++++   M+ +G      T ++ 
Sbjct: 333 CGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSV 392

Query: 341 VSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
           + + S    +E GK++  ++ R+ G   QV  +  ++D+      L+ A K+   ++T+ 
Sbjct: 393 LGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 400 VVS-WSSMIKGYVTH 413
               W S++     H
Sbjct: 453 GPKVWGSLLGSCRIH 467



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 170/362 (46%), Gaps = 11/362 (3%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++++L K G+ ++ L V  Q +     P++ TY  +I  C        G ++H  ++  G
Sbjct: 52  LIQSLCKEGKLKQALRVLSQES----SPSQQTYELLILCCGHRSSLSDGLRVHRHILDNG 107

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
            D    +   L+  Y    G  +  + +  +  K     WN+L       G  E+   L+
Sbjct: 108 SDQDPFLATKLIGMYSDL-GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKS----LELGRIVHCVAVVSDFCKDLSVNTALLSM 277
             M   G E D  T   +L++ V  +     L  G+ +H       +   + + T L+ M
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDM 226

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV--RSGFRADLF 335
           Y++   ++ A  +F+ M  ++ V W+ MI+ Y ++G   E+L     M+        +  
Sbjct: 227 YARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSV 286

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T ++ + + +++  +E G+ +H  +LR G D  + V ++L+ MY  C  L+  +++FD +
Sbjct: 287 TMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRM 346

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             + VVSW+S+I  Y  H    +A+++F EM   G     VT +++L AC + G +E  K
Sbjct: 347 HDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK 406

Query: 456 YL 457
            L
Sbjct: 407 RL 408


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 211/665 (31%), Positives = 349/665 (52%), Gaps = 36/665 (5%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           +  L  +C++P  ++ +HA  II           + LI  YA+ G L  ++ +F+ + SP
Sbjct: 43  TIHLSRICKHPTTVKTLHASLII-----SGHPPDTTLISLYASFGFLRHARTLFHRLPSP 97

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRSCSCLLDFISGEK 152
               +  I++      +    ++ +  +A  ++    D   +  ++++ S L D +   K
Sbjct: 98  THHSFKLIIR-WHFLNDVHSHVVSFYNLARTTLGSFNDLVVFSILLKTASQLRDIVLTTK 156

Query: 153 IHAQVVKL-GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISL 207
           +H  ++K    DSF  V  +LV+ Y KC G   + +    + F ++  R    W S+I  
Sbjct: 157 LHCNILKSNAADSF--VLTSLVDAYSKC-GKLRDAR----KVFDEIPDRSVVSWTSMIVA 209

Query: 208 AVQNGKSEKSFELFKLMR---MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
            VQN  +E+   LF  MR   ++G  F  G+L+    +  +L  L  G+ VH   + +  
Sbjct: 210 YVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVT---ACTKLGCLHQGKWVHGYVIKNGI 266

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMS------DKDRVVWNIMISAYYQSGFPKES 318
             +  + T+LL+MY K   + DA+ +FD+ S        D V W  MI  Y Q G+P+ +
Sbjct: 267 EINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAA 326

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           LEL           +  T  + +S+ + ++NI  GK +H  V++ G D   S+ NSL+DM
Sbjct: 327 LELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDM 385

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  +  A  +F +   K VVSW+S+I GY     + EAL LF+ M++E    D VT+
Sbjct: 386 YAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTV 445

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEK 497
           + +L AC ++GA +    LHG+++K GL S S  V TA+   YAKCG    A  +FD   
Sbjct: 446 VGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFD--G 503

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  K+ +TW +MI      GD      L+  M + ++ P+ + F  LL AC ++G+VEEG
Sbjct: 504 MGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEG 563

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
            +IF  M +   + PS +HYA MV+LL RAG++ EA + +  MP +P   V+G  L  C 
Sbjct: 564 LMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCG 623

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +HS  +  E+   +++ + P+ A  YVL+SN+YA+ G+W  V ++R  ++ RGL K PG 
Sbjct: 624 LHSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGV 683

Query: 678 SWIEI 682
           S +E+
Sbjct: 684 SLVEM 688


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 170/479 (35%), Positives = 275/479 (57%), Gaps = 44/479 (9%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T ++ +  +   ++ A  LF ++ D +  ++N MI A   +     +++    M+R  +R
Sbjct: 24  TKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLRE-YR 82

Query: 332 ----------ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
                      D FT    V + + +     GKQ+HA   + G    +   N+LIDMY +
Sbjct: 83  NSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTK 142

Query: 382 CEDL-------------------------------NCARKIFDSVKTKTVVSWSSMIKGY 410
           C++L                                 AR +FD +  +T+VSW+++I GY
Sbjct: 143 CDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGY 202

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
                 ++AL +F EM++ G+E D  +II++LPAC  +GALE  K++H +  + GL   +
Sbjct: 203 TRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRT 262

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            +  A+   Y KCGCI+ A +LFD+ +   +D+I+W++MI   A HG   +   ++ +MK
Sbjct: 263 CICNALIEMYTKCGCIDQACQLFDQMR--GRDVISWSTMIGGLANHGKVREAIAIFERMK 320

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
           Q++++P+ ITF+GLL+AC +AG  EEG + F  MK+ +  EP  EHY S+V+LLGRAG +
Sbjct: 321 QTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRL 380

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
            +A ++V+ MP KPD+++WG LLS+C+ H   E+A +  E L  +EP++ GNYVLLSNIY
Sbjct: 381 SQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIY 440

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           A  GKW+ V++MR  +R + +KKTPGCS IE+  +  EF + D S P +  I+ +L +L
Sbjct: 441 ADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSKEIFWLLELL 499



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 189/408 (46%), Gaps = 44/408 (10%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L++ HA  +I + L Q+  L + +ID       +  +  +F  +  PN+ LY  +++  +
Sbjct: 4   LKKNHA-LVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACT 62

Query: 108 KFGEYEKTLLVYKQMALQS---------MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
               Y  T+  YKQM  +          + P E T+PFV+++C+ L     G+++HAQ  
Sbjct: 63  HNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFF 122

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFE--------NEKGMIQ--------------RK--- 193
           K G  S     +AL++ Y KCD   +        +E+G I               R+   
Sbjct: 123 KFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARA 182

Query: 194 -FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
            F ++ +R    W ++IS   + G    + ++F+ M++ G E D  ++I++L +  +L +
Sbjct: 183 LFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGA 242

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           LE G+ +H     +   +   +  AL+ MY+K   ++ A  LFD+M  +D + W+ MI  
Sbjct: 243 LETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGG 302

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SD 366
               G  +E++ +   M ++  + +  T +  +S+ +     E G  M+ + ++     +
Sbjct: 303 LANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEG-LMYFDTMKKDFHIE 361

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTH 413
            ++  + SL+D+      L+ A  I + +  K     W S++    TH
Sbjct: 362 PEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTH 409



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 144/356 (40%), Gaps = 44/356 (12%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG---- 409
           K+ HA V++        +   +ID+    ED++ A  +F  V       +++MI+     
Sbjct: 5   KKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHN 64

Query: 410 ---YVTHDQSLEALRLF--SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
               +T D   + LR +  S+   + +  D  T   ++ AC  +G     K +H    K 
Sbjct: 65  SMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKF 124

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDE----------------------------- 495
           G  S      A+   Y KC  +  A  LFDE                             
Sbjct: 125 GKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALF 184

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           +++ ++ I++W ++IS Y + G +     ++ +M+ + + PD  + + +L AC   G +E
Sbjct: 185 DEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALE 244

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G+ I      + G         +++ +  + G +D+A +L   M  + D   W  ++  
Sbjct: 245 TGKWIHMFCARN-GLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGR-DVISWSTMIGG 302

Query: 616 CKMHSETELAELTAEKL--ISMEPENAGNYVLLSNIYAAAGKW-NGVAKMRTFLRD 668
              H +   A    E++   +++P N   +V L +  A AG W  G+    T  +D
Sbjct: 303 LANHGKVREAIAIFERMKQTNIKP-NGITFVGLLSACAHAGFWEEGLMYFDTMKKD 357


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 184/562 (32%), Positives = 298/562 (53%), Gaps = 38/562 (6%)

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTV 244
           ++R F  +  R    +N+LI+     G   +S +L++ L+R E       TL  ++    
Sbjct: 98  MERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---------------------- 282
            L    LG  VHC  +   F     V + L+ MY+K+                       
Sbjct: 158 ALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNT 217

Query: 283 ---------SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
                     +EDAK LF  M D+D + W  M++   Q+G   E+L++   M   G   D
Sbjct: 218 LITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGID 277

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            +T  + +++   +   E GKQ+HA + R   +  V V ++L+DMY +C  +  A  +F 
Sbjct: 278 QYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  + ++SW++MI GY  +  S EA+R FSEM+++G++ D  T+ +++ +C N+ +LE 
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
               H  ++  GL    +V+ A+   Y KCG IE A  LFDE  +   D ++W ++++ Y
Sbjct: 398 GAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDE--MSFHDQVSWTALVTGY 455

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+ G   +   L+ +M  + ++PD +TF+G+L+AC  AGLVE+G   F  M++ +   P 
Sbjct: 456 AQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPI 515

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            +HY  M++L  R+G   EA E +K MP  PDA  W  LLS+C++    E+ +  AE L+
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLL 575

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
             +P+N  +YVLL +++AA G+W  VA +R  +RDR +KK PGCSWI+    VH F A D
Sbjct: 576 ETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 635

Query: 694 QSHPQADAIYTILGILELEIME 715
           QSHP +  IY  L  L  ++ E
Sbjct: 636 QSHPFSSRIYEKLEWLNSKMAE 657



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/573 (23%), Positives = 256/573 (44%), Gaps = 78/573 (13%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           NL   + L+ + A+  L+   +++F S+   +++ Y  ++   S  G   +++ +Y+ + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 124 LQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY------ 176
            + S+ P   T   +I   S L D   G  +H QV++LGF ++  VG  LV+ Y      
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 177 -------------------------IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
                                    ++C    E+ KG+ Q         W ++++   QN
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKM-IEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   ++ ++F+ MR EG   D  T  ++L +   L + E G+ +H     + +  ++ V 
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVG 316

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           +AL+ MYSK  S+  A+ +F +M+ ++ + W  MI  Y Q+   +E++     M   G +
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIK 376

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D FT  + +SS + + ++E G Q H   L +G    ++V N+L+ +Y +C  +  A ++
Sbjct: 377 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           FD +     VSW++++ GY    ++ E + LF +M + G++ D VT I +L AC      
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSAC------ 490

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT----WN 507
                                        ++ G +E   + FD  + D  DI+     + 
Sbjct: 491 -----------------------------SRAGLVEKGCDYFDSMQKD-HDIVPIDDHYT 520

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            MI  Y++ G + +  +   QM  S   PD   +  LL++C   G +E G+   + + E+
Sbjct: 521 CMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLSSCRLRGNMEIGKWAAENLLET 577

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
               P+   Y  + ++    G   E   L + M
Sbjct: 578 DPQNPAS--YVLLCSMHAAKGQWTEVAHLRRGM 608



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 222/530 (41%), Gaps = 109/530 (20%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L    ALLS  +    + D + LF  M ++D V +N +I+ +  +G P  S++L   ++
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 327 RS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
           R    R    T  A +   S + +   G  +H  VLR G      V + L+DMY +   +
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 386 NCARKIFDSVKTKTVV-------------------------------SWSSMIKGYVTHD 414
             AR++F  ++ KTVV                               +W++M+ G   + 
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
             LEAL +F  M+ EGV +D  T  +IL AC  + A E  K +H Y  +        V +
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGS 317

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y+KC  I +A  +F   ++  ++II+W +MI  Y ++    +  + +++M+   +
Sbjct: 318 ALVDMYSKCRSIRLAEAVF--RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
           +PD  T   ++++C N   +EEG   F  +    G         ++V L G+ G +++A 
Sbjct: 376 KPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434

Query: 595 ELVKDMPF----------------------------------KPDARVWGPLLSACKMHS 620
            L  +M F                                  KPD   +  +LSAC   S
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSAC---S 491

Query: 621 ETELAELTAEKLISMEPEN-----AGNYVLLSNIYAAAGKWN----------------GV 659
              L E   +   SM+ ++       +Y  + ++Y+ +G++                 G 
Sbjct: 492 RAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGW 551

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD---QSHPQADAIYTIL 706
           A + +  R RG         +EIGK     WAA+   ++ PQ  A Y +L
Sbjct: 552 ATLLSSCRLRGN--------MEIGK-----WAAENLLETDPQNPASYVLL 588



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 171/328 (52%), Gaps = 2/328 (0%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +      + +++ + LI       ++  ++ +F  +   +S+ + T++  L++ G  
Sbjct: 200 ARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQ 259

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            + L V+++M  + +   + T+  ++ +C  L     G++IHA + +  ++    VG AL
Sbjct: 260 LEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSAL 319

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           V+ Y KC      E    +   +++ S W ++I    QN  SE++   F  M+M+G + D
Sbjct: 320 VDMYSKCRSIRLAEAVFRRMTCRNIIS-WTAMIVGYGQNACSEEAVRAFSEMQMDGIKPD 378

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             TL +++ S   L SLE G   HC+A+VS   + ++V+ AL+++Y K  S+EDA  LFD
Sbjct: 379 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFD 438

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +MS  D+V W  +++ Y Q G  KE+++L   M+ +G + D  T I  +S+ S    +E 
Sbjct: 439 EMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEK 498

Query: 353 GKQMHANVLRNGSDYQVSVH-NSLIDMY 379
           G     ++ ++     +  H   +ID+Y
Sbjct: 499 GCDYFDSMQKDHDIVPIDDHYTCMIDLY 526



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 47/319 (14%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA YI       N+ + S L+D Y+    + L++ VF  +T  N + +  ++    +
Sbjct: 298 KQIHA-YITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQ 356

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
               E+ +  + +M +  + P + T   VI SC+ L     G + H   +  G   +  V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 169 GDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
            +ALV  Y KC G  E+   +  +  F D  S W +L++   Q GK++++ +LF+ M + 
Sbjct: 417 SNALVTLYGKC-GSIEDAHRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLVN 474

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G + D  T I                                    +LS  S+   +E  
Sbjct: 475 GLKPDGVTFI-----------------------------------GVLSACSRAGLVEKG 499

Query: 288 KMLFDKMSDKDRVV-----WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
              FD M     +V     +  MI  Y +SG  KE+ E +  M  S    D F     +S
Sbjct: 500 CDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHS---PDAFGWATLLS 556

Query: 343 SISTMKNIEWGKQMHANVL 361
           S     N+E GK    N+L
Sbjct: 557 SCRLRGNMEIGKWAAENLL 575


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 177/453 (39%), Positives = 274/453 (60%), Gaps = 4/453 (0%)

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G+ +HC+ +   F  D+ V  +L+ MYS+   + DA+ LFD M  +DR  WN MIS Y Q
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G   E+L++   M   G + D  T  + +   + + +I  GK +H  V+++G ++++ V
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFV 132

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK-LEG 430
            N+LI+MY +   L  A+K+F  +  K VVSW+++I GY  +  + EA+ ++  M+  E 
Sbjct: 133 SNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEE 191

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           +  +  T ++ILPA  ++GAL+    +HG  +K  L S   V T +   Y KCG ++ A 
Sbjct: 192 IIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAI 251

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            LF   ++  K+ + WN+MIS Y  HGD  +  +L+ +MK   V+PD ITF+ LL+AC +
Sbjct: 252 SLF--YQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSH 309

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           +GLV + +  F  M+E YG +PS +HY  MV+L GRAG ++ A   +K MP +PDA  WG
Sbjct: 310 SGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWG 369

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LL+AC++H   EL +  +E+L  ++ EN G YVLLSNIYA  GKW GV  +R+  RDRG
Sbjct: 370 ALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRG 429

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           L+K PG S I +   V  F+  +Q+HP+ + IY
Sbjct: 430 LRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIY 462



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 228/483 (47%), Gaps = 62/483 (12%)

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P V+++C  LLD   G+KIH  V+KLGF+    V  +LV  Y +         G  ++ F
Sbjct: 1   PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRF-----GLVGDARKLF 52

Query: 195 KDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
            D+ +R    WN++IS   QNG + ++ ++   MR+EG + D+ T+ ++L    ++  + 
Sbjct: 53  DDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDIL 112

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            G+++H   +      +L V+ AL++MY+K  SL  A+ +F  +  KD V WN +I+ Y 
Sbjct: 113 SGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYA 171

Query: 311 QSGFPKESLELLMCM-VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
           Q+G   E++E+ + M        +  T ++ + + S +  ++ G ++H  V++N     V
Sbjct: 172 QNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDV 231

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V   LIDMY +C  L+ A  +F  V  K  V W++MI  Y  H    +AL LF EMK E
Sbjct: 232 FVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAE 291

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            V+ D +T +++L AC + G +   ++                            C  M 
Sbjct: 292 RVKPDHITFVSLLSACSHSGLVSDAQW----------------------------CFNM- 322

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
               +EE      +  +  M+  + + G+    F     +K+  ++PD   +  LL AC 
Sbjct: 323 ---MEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNF---IKKMPIQPDASAWGALLNACR 376

Query: 550 NAGLVEEGR----IIFKEMKESYGYEPSQEHYASMVNLLGRAGH---MDEARELVKDMPF 602
             G +E G+     +F+   E+ GY      Y  + N+    G    +D+ R L +D   
Sbjct: 377 IHGNIELGKHASERLFEVDSENVGY------YVLLSNIYANVGKWEGVDDVRSLARDRGL 430

Query: 603 KPD 605
           + +
Sbjct: 431 RKN 433



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 154/299 (51%), Gaps = 6/299 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH   + L G   ++ ++++L+  Y+  GL+  ++++F+ + + +   +  ++    +
Sbjct: 14  KKIHCLVLKL-GFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L +  +M L+ +     T   V+  C+ + D +SG+ IH  V+K G +    V
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFV 132

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            +AL+  Y K  G   + + +     KD+ S WN+LI+   QNG + ++ E++ LM  E 
Sbjct: 133 SNALINMYAKF-GSLGHAQKVFGLLIKDVVS-WNTLITGYAQNGLASEAIEVYLLME-EH 189

Query: 229 AEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
            E   + GT +++L +   + +L+ G  +H   + +    D+ V T L+ MY K   L+D
Sbjct: 190 EEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDD 249

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           A  LF ++  K+ V WN MIS Y   G  +++LEL   M     + D  T ++ +S+ S
Sbjct: 250 AISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACS 308


>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 294/491 (59%), Gaps = 16/491 (3%)

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL--ASLEDAK 288
           +D   L+   + T  +KS      +H   ++  F ++  +   L+  Y++   +++EDA+
Sbjct: 8   YDYTYLLQRCKGTKTIKS------IHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDAR 61

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD + D+D  VWN +I  Y   G   E+L +   M  SG  A+ +T    + +   MK
Sbjct: 62  KVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMK 121

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           + + G+ +H +V+++G D  + V N+L+  Y +C ++  +R++FD +  K +V+W+SMI 
Sbjct: 122 DGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMIS 181

Query: 409 GYVTHDQSLEALRLFSEM-KLEGVEV---DFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           GY  +  + +AL LF  M +++G  V   D  T++ ILPAC    A++   ++H Y +K 
Sbjct: 182 GYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKS 241

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G+   +++ + +   YA CG +  A ++FD  +ID K+I+ WN++I  Y  HG   +  K
Sbjct: 242 GIELDAALGSGLIAMYANCGLLNSARDVFD--RIDDKNIVVWNAIIRCYGMHGHADEALK 299

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           +++ +  S + PD + FL LL+A  +AG+V EG  +F++M + YG E S EHYAS+V++L
Sbjct: 300 MFSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGD-YGVEKSSEHYASVVDIL 358

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644
           GRAG + EA E VK+MP +P   V+G LL AC++H+  ELAE  AEKL  ++P+NAG Y+
Sbjct: 359 GRAGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPDNAGRYI 418

Query: 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           +L  +Y  AGKW   A++R  L+++ ++K  GCS IE+G ++H F   D+SHP  D I+ 
Sbjct: 419 ILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGCVLHTFGVEDKSHPFKDQIFD 478

Query: 705 ILGILELEIME 715
            L  L+  IME
Sbjct: 479 TLERLD-NIME 488



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANL--GLLSLSQQVFNSITSPN 95
           LL  C+  + ++ IHA+ II+ G  +N  L + L+  YA      +  +++VF+ +   +
Sbjct: 13  LLQRCKGTKTIKSIHAQ-IIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRD 71

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             ++ TI++  +  G + + L +Y+ M    +     T+PFV+++C  + D   G+ IH 
Sbjct: 72  VFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHG 131

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQN 211
            VVK G D    VG+ALV FY KC     NE G  +R F  +  +    WNS+IS    N
Sbjct: 132 HVVKHGLDLDLFVGNALVAFYAKC-----NEIGASRRVFDMISEKDIVTWNSMISGYAIN 186

Query: 212 GKSEKSFELF-KLMRMEGAEF---DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
           G ++ +  LF  +++++G      DS TL+ +L +  +  +++ G  +H   + S    D
Sbjct: 187 GCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELD 246

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
            ++ + L++MY+    L  A+ +FD++ DK+ VVWN +I  Y   G   E+L++   ++ 
Sbjct: 247 AALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLID 306

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           SG   D    +  +S+ S    +  G ++   +   G +     + S++D+
Sbjct: 307 SGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASVVDI 357


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 215/670 (32%), Positives = 347/670 (51%), Gaps = 25/670 (3%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK--FGEY 112
           +++  G   +L + S L+ ++A  GL   ++ +F S+   N++    ++  L +  F E 
Sbjct: 300 WVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEE 359

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF-IS------GEKIHAQVVKLGFDSF 165
              + V  +    ++    DTY  ++   S L ++ IS      G  +H  +++ G    
Sbjct: 360 AVKIFVGTR---NTVDVNADTYVVLL---SALAEYSISEEGLRIGRVVHGHMLRTGLTDL 413

Query: 166 D-DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
              V + LV  Y KC G  E+   + Q      +  WN++IS   QNG  E++   + LM
Sbjct: 414 KIAVSNGLVNMYAKC-GAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLM 472

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           R       +  LI+ L S   LK L  G+ VHC AV      D SV+  L+ MY +  ++
Sbjct: 473 RQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAM 532

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFP-KESLELLMCMVRSGFRADLFTAIAAVSS 343
            D   +F+ M++ D V WN M+     S  P  E +++   M+R G   +  T I  +++
Sbjct: 533 SDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAA 592

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVS 402
           +S +  +E GKQ+HA V+++G      V N+LI  Y +  D+     +F ++  +   +S
Sbjct: 593 LSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAIS 652

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+SMI GY+ +    EA+     M   G  +D  T   IL AC ++ ALE    LH + +
Sbjct: 653 WNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGI 712

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           +  L S   V +A+   Y+KCG ++ A +LF+   +  ++  +WNSMIS YA+HG   + 
Sbjct: 713 RSHLESDVVVESALVDMYSKCGRVDYASKLFN--SMTQRNEFSWNSMISGYARHGLGRKA 770

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +++ +M +S   PD +TF+ +L+AC +AGLVE G   F EM   +G  P  EHY+ +++
Sbjct: 771 IEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYF-EMMPDHGILPQIEHYSCVID 829

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH---SETELAELTAEKLISMEPEN 639
           LLGRAG +D+ +E ++ MP +P+A +W  +L AC+     S  +L    +  L+ +EP+N
Sbjct: 830 LLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQN 889

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
             NYVL SN +AA G W   AK RT +R    KK  G SW+ +   VH F A D+SHP  
Sbjct: 890 PVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNT 949

Query: 700 DAIYTILGIL 709
             IY  L  L
Sbjct: 950 KEIYEKLNFL 959



 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 136/585 (23%), Positives = 279/585 (47%), Gaps = 37/585 (6%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +I  GL+ +L L ++L++SYA    L+ + QVF+ +   N++ +  ++      G  E+ 
Sbjct: 87  LIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEA 146

Query: 116 LLVYKQMALQ---SMYPAEDTYPFVIRSCS----CLLDFISGEKIHAQVVKLGFDSFDDV 168
             V++ M  +      P   T+  ++R+C       L F    ++H  V K  + S   V
Sbjct: 147 FRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGF--AVQVHGLVSKTEYASNTTV 204

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLM 224
            +AL+  Y  C  G      + QR F     R    WN+L+S+  + G    +F LFK M
Sbjct: 205 CNALISMYGSCTVG---PPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDM 261

Query: 225 -------RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KDLSVNTALLS 276
                  ++   E   G+LI     +    ++ L +++  V V+   C  DL V +AL+S
Sbjct: 262 QRGDSRIQLRPTEHTFGSLITAASLSSGSSAV-LDQVL--VWVLKSGCSSDLYVGSALVS 318

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
            +++    ++AK +F  +  K+ V  N +I    +  F +E++++ +   R+    +  T
Sbjct: 319 AFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG-TRNTVDVNADT 377

Query: 337 AIAAVSSIS----TMKNIEWGKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  +S+++    + + +  G+ +H ++LR G +D +++V N L++MY +C  +  A KI
Sbjct: 378 YVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKI 437

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  ++    +SW+++I     +    EA+  +S M+   +      +I+ L +C  +  L
Sbjct: 438 FQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLL 497

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
              + +H  ++K GL+  +SV+  +   Y +CG +    ++F+   +   D ++WN+M+ 
Sbjct: 498 TAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFN--SMAEHDEVSWNTMMG 555

Query: 512 AYA-KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
             A      S+  K++  M +  + P+ +TF+ LL A     ++E G+ +   + + +G 
Sbjct: 556 VMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMK-HGV 614

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
                   ++++   ++G M     L  +M  + DA  W  ++S 
Sbjct: 615 MEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISG 659



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 13/204 (6%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +H  +++ G ++ + + N L++ Y +   L  A ++FD +  +  VSW+ ++ GYV H
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 414 DQSLEALRLFSEMKLE---GVEVDFVTIINILPACVNIGA--LEHVKYLHGYSMKLGLNS 468
             + EA R+F  M  E   G      T   +L AC + G   L     +HG   K    S
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 469 LSSVNTAIFISYAKC--GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            ++V  A+   Y  C  G   +A  +FD   I  +D+ITWN+++S YAK GD +  F L+
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPI--RDLITWNALMSVYAKKGDVASTFTLF 258

Query: 527 TQMKQSD----VRPDLITFLGLLT 546
             M++ D    +RP   TF  L+T
Sbjct: 259 KDMQRGDSRIQLRPTEHTFGSLIT 282



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 178/407 (43%), Gaps = 27/407 (6%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           DL +   L++ Y+K A L  A  +FD+M +++ V W  ++S Y   G  +E+  +   M+
Sbjct: 95  DLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAML 154

Query: 327 R---SGFRADLFT--AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY-- 379
           R   +G R   FT   +           + +  Q+H  V +       +V N+LI MY  
Sbjct: 155 REVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGS 214

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-------KLEGVE 432
           C       A+++FD    + +++W++++  Y           LF +M       +L   E
Sbjct: 215 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTE 274

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
             F ++I          A+  +  +  + +K G +S   V +A+  ++A+ G  + A ++
Sbjct: 275 HTFGSLITAASLSSGSSAV--LDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDI 332

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNA 551
           F   K   K+ +T N +I    +     +  K++   + + DV  D  T++ LL+A    
Sbjct: 333 FLSLK--QKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNAD--TYVVLLSALAEY 388

Query: 552 GLVEE----GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
            + EE    GR++   M  +   +        +VN+  + G ++ A ++ + M    D  
Sbjct: 389 SISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLME-ATDRI 447

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
            W  ++SA   +   E A +    L+     +  N+ L+S++ + AG
Sbjct: 448 SWNTIISALDQNGNCEEA-VMHYSLMRQSCISPSNFALISSLSSCAG 493


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 278/540 (51%), Gaps = 76/540 (14%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV------ 301
           +L L R +H VA VS   +D  V ++LL  Y +L +  +A+ LFD M    R V      
Sbjct: 32  TLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSAL 91

Query: 302 --------------------------------WNIMISAYYQSGFPKESLELLMCMVRSG 329
                                           WN ++S   +SG  ++++  L  M   G
Sbjct: 92  VAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEG 151

Query: 330 F-RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC------ 382
             R D      A+S++  +  +  G+Q+H   ++ G      V  +LIDMY +C      
Sbjct: 152 LLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEV 211

Query: 383 -----------------------------EDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
                                        E L   ++  D      VVSW+S++   V +
Sbjct: 212 VRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQN 271

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
            + LEA+  F EM+ +G E + VTI  +LPA  N+ AL H +  H ++++ G      V+
Sbjct: 272 GKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVS 331

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           +A+   YAKCG ++ A  +FD   + S+++++WN+MI  YA +G+      ++  M +  
Sbjct: 332 SALVDMYAKCGRVKDARIIFD--TMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCK 389

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            +PD++TF  LL AC  AGL EEGR  FKEM   YG  P  EHYA MV LLGRAG +DEA
Sbjct: 390 QKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEA 449

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
            +L+ DMPF+PDA +WG LL +C++H   +LAE+ AEKL  +EPENAGNYVLLSNIYA+ 
Sbjct: 450 YDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASK 509

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             W+ V ++R  ++D GLKK  GCSWIEI   VH   A D SHP   AI   +  L +++
Sbjct: 510 KMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQM 569



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 172/418 (41%), Gaps = 84/418 (20%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           FLR  +    PH+  T        C      + +HA    + GL ++  ++S+L+ +Y  
Sbjct: 10  FLRHVSFPPDPHLLPT----AFKSCPTLPLARALHA-VAEVSGLARDPFVASSLLHAYLR 64

Query: 78  LGLLSLSQQVFNSITSPNSLLYG------------------TILKNLSKFGEYEKTLLVY 119
           LG    ++ +F+ +  P   + G                   +L+ + + G  E  ++ +
Sbjct: 65  LGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITW 124

Query: 120 KQM---------------ALQSMYPAEDTYPFVIRSCSCLLDFIS-------GEKIHAQV 157
             +               AL +M+      P      SC L  +        G+++H   
Sbjct: 125 NGLVSGLNRSGRARDAVVALATMHGEGLLRPDAT-GVSCALSAVGDVGLVSVGQQLHGYA 183

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFE-----NEKGMIQ--------------------- 191
           VK G  +   V  AL++ Y KC    E     +E   +                      
Sbjct: 184 VKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEAL 243

Query: 192 RKFKDLKSR--------WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           R FK+   R        W S+++  VQNGK  ++ E F+ M+ +G E +S T+  +L + 
Sbjct: 244 RLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAF 303

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             + +L  GR  HC A+   F  D+ V++AL+ MY+K   ++DA+++FD M  ++ V WN
Sbjct: 304 ANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWN 363

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG----KQMH 357
            MI  Y   G    ++ +   M++   + D+ T    +++ +     E G    K+MH
Sbjct: 364 AMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMH 421



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 149/355 (41%), Gaps = 38/355 (10%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV-ELKSLELGRIVHCVA 259
           WN L+S   ++G++  +      M  EG      T ++   S V ++  + +G+ +H  A
Sbjct: 124 WNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYA 183

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD--------------------- 298
           V +    D  V TAL+ MY K     +   +FD+ S  D                     
Sbjct: 184 VKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEAL 243

Query: 299 --------------RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
                          V W  +++   Q+G   E++E    M   G   +  T    + + 
Sbjct: 244 RLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAF 303

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + +  +  G+  H   LR G  + V V ++L+DMY +C  +  AR IFD++ ++ VVSW+
Sbjct: 304 ANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWN 363

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMK 463
           +MI GY  + +++ A+ +F  M     + D VT   +L AC   G  E  + Y      +
Sbjct: 364 AMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNE 423

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            G++        +     + G ++ A +L  +   +  D   W S++ +   HG+
Sbjct: 424 YGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFE-PDAYIWGSLLGSCRVHGN 477



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 433 VDFVTIINILP-ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           V F    ++LP A  +   L   + LH  +   GL     V +++  +Y + G    A  
Sbjct: 14  VSFPPDPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARA 73

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ-SDVRPDLITFLGLLTACVN 550
           LFD      + ++ W+++++A+A  GD    ++L  +M++   V P++IT+ GL++    
Sbjct: 74  LFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNR 133

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           +G   +  +    M       P     +  ++ +G  G +   ++L
Sbjct: 134 SGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQL 179


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 180/468 (38%), Positives = 275/468 (58%), Gaps = 3/468 (0%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           + NLL S    +SL  G  +H   +         V+  L+++YSK      +  +FD+  
Sbjct: 28  ICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETP 87

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            K    W+ +ISA+ Q+  P  +L+    M+  G R D     +A  +   ++  + GK 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H   ++ G    V V +SL+DMY +C ++  AR +FD +  + VVSWS MI GY   D 
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            +EAL LF +  +E V+V+  T  +++  C +   LE  K +HG  +K+  +S S V +A
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSA 267

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y+KCG IE A ++FDE  I ++++  WNSM+ A A+H    + F L+ +M    ++
Sbjct: 268 LISLYSKCGVIEGAYQVFDE--IPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMK 325

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+ I FL +L AC +AGLVE+GR  F  M++ YG EP  EHYAS+V+LLGRAG + EA  
Sbjct: 326 PNFIXFLSVLYACSHAGLVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVS 384

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           ++K MP +P   VWG LL+ C++H +TE+A   A++++ M+  ++G +VLLSN YAAAG+
Sbjct: 385 VIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGR 444

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           +   A+MR  LRDRG+KK  G SW+E G  VH F A D+SH +   IY
Sbjct: 445 YEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 155/318 (48%), Gaps = 7/318 (2%)

Query: 141 CSCLLDFI------SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           C+ LL F        G ++HA ++K G  +   V   L+  Y K      + + +     
Sbjct: 29  CNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQ-VFDETP 87

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           K   + W+S+IS   QN     + + F+ M  +G   D     +  ++   L+  ++G+ 
Sbjct: 88  KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKS 147

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           VHC+AV + +  D+ V ++L+ MY+K   + DA+ LFD+M +++ V W+ MI  Y Q   
Sbjct: 148 VHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDD 207

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E+L L    +      + FT  + +   S+   +E GK +H   L+   D    V ++
Sbjct: 208 GVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSA 267

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI +Y +C  +  A ++FD + T+ +  W+SM+     H  +     LF EM   G++ +
Sbjct: 268 LISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPN 327

Query: 435 FVTIINILPACVNIGALE 452
           F+  +++L AC + G +E
Sbjct: 328 FIXFLSVLYACSHAGLVE 345



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 170/375 (45%), Gaps = 17/375 (4%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+HA +I+  GL    ++S NLI+ Y+   L   S QVF+     +S  + +++   S F
Sbjct: 46  QLHA-HILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI---SAF 101

Query: 110 GEYEKTLLV---YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
            + E  LL    +++M    + P +  YP   ++C  L     G+ +H   VK G+    
Sbjct: 102 AQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDV 161

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
            VG +LV+ Y KC      E G  +  F ++  R    W+ +I    Q     ++  LFK
Sbjct: 162 FVGSSLVDMYAKC-----GEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFK 216

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
              +E  + +  T  +++R       LELG+++H + +   F     V +AL+S+YSK  
Sbjct: 217 QALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCG 276

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            +E A  +FD++  ++  +WN M+ A  Q    +    L   M   G + +    ++ + 
Sbjct: 277 VIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLY 336

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S    +E G++  + +   G + +   + SL+D+      L  A  +   +  +   S
Sbjct: 337 ACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTES 396

Query: 403 -WSSMIKGYVTHDQS 416
            W +++ G   H  +
Sbjct: 397 VWGALLTGCRIHKDT 411



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           E ++  I N+L +     +L     LH + +K GL ++  V+  +   Y+K      + +
Sbjct: 22  EQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQ 81

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FDE     K   TW+S+ISA+A++       + + +M    VRPD   +     AC   
Sbjct: 82  VFDETP--KKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFL 139

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
              + G+ +   +    GY       +S+V++  + G + +AR L  +MP
Sbjct: 140 RRSDVGKSV-HCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 201/671 (29%), Positives = 344/671 (51%), Gaps = 62/671 (9%)

Query: 91  ITSPNSLLYGTI---LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL-- 145
           +++ +  + G+I   LK+ +  G+  K+   +  + L++ Y   D++  +++S S LL  
Sbjct: 31  VSNSSEFMIGSIFSSLKDFASHGQLSKSFEAFSLIQLRTSY--NDSFDLILQSISILLVS 88

Query: 146 -----DFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
                    G+++H  ++  G   DSF  +   LV FY   +        +++       
Sbjct: 89  CTKSSSLPPGKQLHGHIISSGLVEDSF--LVSKLVMFYSSLEF-LPEAHTLVETSNLFRP 145

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV 258
             WN LI+  V++   E +   +K M  +G   D+ T  ++L++  E ++L+ G  VH  
Sbjct: 146 CSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKS 205

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
                    L V+ AL+SMY +   ++ A+ LFD M ++D V WN MIS Y   G  +E+
Sbjct: 206 INSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREA 265

Query: 319 LEL----------------------------------LMCMVRS-GFRADLFTAIAAVSS 343
            EL                                  L+  +R+ G   D    I  + +
Sbjct: 266 FELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGA 325

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            S +  I  GK++H   +R+      +V N+L+ MY  C+D+  A  +F     K+ ++W
Sbjct: 326 CSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITW 385

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +SM+ G     +  EAL LF E+ L GVE D+VT  +ILP C  +  L+H +  H Y  K
Sbjct: 386 NSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITK 445

Query: 464 -LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
                    +  A+   YA+ G +  A  +F    +  KD +T+ S+I+ Y   G+  + 
Sbjct: 446 HRDFRDHLLLWNALVDMYARAGKVSEAKRIF--YSLSKKDEVTYTSLIAGYGMQGEGGKA 503

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            +L+ +MK+  ++PD IT + +L+AC ++GLV +  ++F EM+  +G  P  EHYA M +
Sbjct: 504 VRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMAD 563

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           L GR G +++A+E++  MP++P + +W  L+ AC +H   ++ E  AEKL+ M PE++G 
Sbjct: 564 LFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGY 623

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA--- 699
           YVL++N+YAAAG W+ +A++RT +RD G+ K PGCSW+++G     F   D S PQA   
Sbjct: 624 YVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDVGSEFISFSVGDTSSPQALES 683

Query: 700 ----DAIYTIL 706
               D++Y ++
Sbjct: 684 KLLLDSLYDVM 694



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 224/508 (44%), Gaps = 42/508 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H  +II  GL ++  L S L+  Y++L  L  +  +  +        +  ++ +  K
Sbjct: 99  KQLHG-HIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVK 157

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
              YE  +L YKQM  + + P   T+P ++++C    +   G ++H  +          V
Sbjct: 158 HKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFV 217

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK------ 222
            +AL+  Y +C G  +  + +     +     WNS+IS     G   ++FELF+      
Sbjct: 218 HNALISMYGRC-GEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKC 276

Query: 223 -----------------------------LMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
                                         MR  G   D   +I  L +   + ++ LG+
Sbjct: 277 LEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGK 336

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H   +        +V  AL++MY++   +  A MLF    DK R+ WN M+S     G
Sbjct: 337 EIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLG 396

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSV 371
             +E+L L   ++  G   D  T  + +   + + +++ G++ H  + ++  D++  + +
Sbjct: 397 RVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKH-RDFRDHLLL 455

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N+L+DMY     ++ A++IF S+  K  V+++S+I GY    +  +A+RLF EMK   +
Sbjct: 456 WNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQI 515

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAG 490
           + D +T+I +L AC + G +   + L      + GL+        +   + + G +  A 
Sbjct: 516 KPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAK 575

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGD 518
           E+           I W ++I A   HG+
Sbjct: 576 EIITRMPYRPTSAI-WATLIGACCIHGN 602



 Score = 43.5 bits (101), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 37  SLLNLCE---NPQHLQQIHARYIILH-GLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           S+L LC    + QH ++ H  YI  H     +L+L + L+D YA  G +S ++++F S++
Sbjct: 422 SILPLCARVADLQHGREFHC-YITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLS 480

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
             + + Y +++      GE  K + ++++M    + P   T   V+ +CS
Sbjct: 481 KKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACS 530


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 205/648 (31%), Positives = 326/648 (50%), Gaps = 49/648 (7%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD-------FISGEKIHA 155
           L +L+  G        +  + LQS  P+  +   V+ S + LL        F+ G +IHA
Sbjct: 10  LGHLASHGHLHDAFKTFSLLRLQSS-PSAVSGDVVLHSAASLLSACVDVLAFVPGLQIHA 68

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKS 214
             V  G +    +   LV FY   +     E   I      L    WN LI+   +N   
Sbjct: 69  HCVSSGVEYHSALVPKLVTFYSAFN--LHREAQSINENSDILHPLPWNVLIASYAKNELF 126

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E+    +K M  +G   D+ T  ++L++  E   +  GR+VH    VS +   L V  AL
Sbjct: 127 EEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNAL 186

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           +SMY +  ++  A+ LFD MS++D V WN +I+ Y   G   E+ EL   M  SG    +
Sbjct: 187 ISMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSV 246

Query: 335 FT-------------AIAAVSSISTMKN----------------------IEWGKQMHAN 359
            T              + A+  IS M+N                      I  GK++H  
Sbjct: 247 ITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGL 306

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            +    D   +V N+LI MY +C+DL  A  +F   +  ++ +W+S+I GY   ++S EA
Sbjct: 307 AIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEA 366

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFI 478
             L  EM L G + +F+T+ +ILP C  I  L+H K  H Y ++       + +  ++  
Sbjct: 367 SYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVD 426

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAK G I  A ++     +   D +T+ S+I  Y   G+      L+ +M +S ++PD 
Sbjct: 427 VYAKSGKIVAAKQV--SNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDP 484

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +T + +L+AC ++ LV EG+ +F +M+  YG  P  +H++ MV+L GRAG + +A++++ 
Sbjct: 485 VTMVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIH 544

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
            MP++P    W  LL+AC +H  TE+ +  AEKL+ M+PEN G YVL++N+YA AG W+ 
Sbjct: 545 RMPYEPSGATWATLLNACHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATAGSWSK 604

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +A++RT +RD G++K PGC+WI        F   D S+PQA   Y +L
Sbjct: 605 LAEVRTIMRDLGVRKDPGCAWINTDSGFSLFSVGDTSNPQACDTYPLL 652



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 140/601 (23%), Positives = 260/601 (43%), Gaps = 90/601 (14%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIHA + +  G+  +  L   L+  Y+   L   +Q +  +    + L +  ++ + +K 
Sbjct: 65  QIHA-HCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKN 123

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
             +E+ +  YK+M  + + P   TYP V+++C   LD  SG  +H  +    +     V 
Sbjct: 124 ELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVC 183

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMR 225
           +AL+  Y +    F N  G+ +R F  +  R    WN++I+     G   ++FELF  MR
Sbjct: 184 NALISMYKR----FGN-VGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMR 238

Query: 226 MEGAE-----------------------------------FDSGTLINLLRSTVELKSLE 250
             G E                                    D   +I  L++   + ++ 
Sbjct: 239 FSGVEVSVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIR 298

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LG+ +H +A+   +    +V   L++MYSK   L +A ++F K  +     WN +IS Y 
Sbjct: 299 LGKEIHGLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYA 358

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDYQ 368
           Q    +E+  LL  M+ +GF+ +  T  + +   + + N++ GK+ H  +LR     DY 
Sbjct: 359 QVNKSEEASYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYT 418

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           + + NSL+D+Y +   +  A+++ + +     V+++S+I GY    +   AL LF EM  
Sbjct: 419 M-LWNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIR 477

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLH-GYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            G++ D VT++ +L AC       H K +H G  + + +             Y    C++
Sbjct: 478 SGIKPDPVTMVAVLSAC------SHSKLVHEGQRLFMKMQP----------KYGIRPCLQ 521

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
                             ++ M+  Y + G  ++   +  +M      P   T+  LL A
Sbjct: 522 -----------------HFSCMVDLYGRAGFLAKAKDIIHRMPY---EPSGATWATLLNA 561

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG---HMDEARELVKDMPFKP 604
           C   G  E G+   +++ E     P   +Y  + N+   AG    + E R +++D+  + 
Sbjct: 562 CHIHGNTEIGKWAAEKLLEMKPENPG--YYVLIANMYATAGSWSKLAEVRTIMRDLGVRK 619

Query: 605 D 605
           D
Sbjct: 620 D 620



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 37  SLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L LC    N QH ++ H   +         +L ++L+D YA  G +  ++QV N ++ 
Sbjct: 387 SILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSE 446

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + Y +++      GE    L ++ +M    + P   T   V+ +CS       G+++
Sbjct: 447 IDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVHEGQRL 506

Query: 154 HAQV-VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQN 211
             ++  K G          +V+ Y +  G     K +I R  ++   + W +L++    +
Sbjct: 507 FMKMQPKYGIRPCLQHFSCMVDLYGRA-GFLAKAKDIIHRMPYEPSGATWATLLNACHIH 565

Query: 212 GKSE 215
           G +E
Sbjct: 566 GNTE 569


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 328/652 (50%), Gaps = 76/652 (11%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           ++  Y+  G L L+  +F +I  P++  Y T+L  L+          ++ +M      P 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM------PV 128

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD-------ALVEFYIKCDGGF 183
            D+  + +         IS    H  +V L    FD   +        ++  Y++ +G  
Sbjct: 129 RDSVTYNV--------MISSHANHG-LVSLARHYFDLAPEKDAVSWNGMLAAYVR-NGRV 178

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           E  +G+   + +     WN+L+S  VQ GK  ++ ELF   RM G +  S    N++ S 
Sbjct: 179 EEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFD--RMPGRDVVS---WNIMVSG 233

Query: 244 VELKS--LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
              +   +E  R+     V     +D+   TA++S Y++   LE+A+ +FD M +++ V 
Sbjct: 234 YARRGDMVEARRLFDAAPV-----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS 288

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN M++AY Q     E+ EL   M                                    
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMP----------------------------------C 314

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           RN     V+  N+++  Y +   L  A+ +FD++  K  VSW++M+  Y     S E L+
Sbjct: 315 RN-----VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF EM   G  V+      +L  C +I ALE    LHG  ++ G      V  A+   Y 
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A   F+E  ++ +D+++WN+MI+ YA+HG   +  +++  M+ +  +PD IT 
Sbjct: 430 KCGNMEDARNAFEE--MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L AC ++GLVE+G   F  M   +G     EHY  M++LLGRAG + EA +L+KDMP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           F+PD+ +WG LL A ++H   EL    AEK+  +EPENAG YVLLSNIYA++GKW    K
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           MR  + +RG+KK PG SWIE+   VH F A D  HP+ + IY  L  L++ +
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRM 659



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 124/253 (49%), Gaps = 13/253 (5%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +N+   + ++  YA  G+L  ++ VF+++   +++ +  +L   S+ G  E+TL ++ +M
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                +     +  V+ +C+ +     G ++H ++++ G+     VG+AL+  Y KC G 
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC-GN 433

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            E+ +      F++++ R    WN++I+   ++G  +++ E+F +MR    + D  TL+ 
Sbjct: 434 MEDARN----AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMS- 295
           +L +      +E G I +  ++  DF         T ++ +  +   L +A  L   M  
Sbjct: 490 VLAACSHSGLVEKG-ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 548

Query: 296 DKDRVVWNIMISA 308
           + D  +W  ++ A
Sbjct: 549 EPDSTMWGALLGA 561


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/487 (36%), Positives = 274/487 (56%), Gaps = 43/487 (8%)

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-- 327
           V T ++ + +       A  +F  +   +  + N MI AY Q+   ++++E+ + M+R  
Sbjct: 44  VATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCL 103

Query: 328 ------SGFR-ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
                  GF   D FT    + +   +   + G+Q+HA+V R+G +    V NSLI+MY 
Sbjct: 104 PDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYT 163

Query: 381 ECEDLNCARKIFD-------------------------------SVKTKTVVSWSSMIKG 409
            C DL+ ARK+FD                               S+  KTVVSW++++ G
Sbjct: 164 RCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSG 223

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y        A+ +F +M++EG E D V+I+ +LPAC  +GALE  ++++ Y  K G+   
Sbjct: 224 YTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGK 283

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             +  A+   YAKCGCIE A +LF    +  KD+I+W++ I   A HG   +  KL+  M
Sbjct: 284 IYICNALMEMYAKCGCIEEALQLF--HGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVM 341

Query: 530 -KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
            ++  V P+ ITF+GLL+AC +AGL++EG   F  MKE YG EPS EHY  +V+LLGR+G
Sbjct: 342 DREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSG 401

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +  A + +  MP  PD ++WG LLSAC+ HS+ + A + AE+L+ +EPE+ GN V+L+N
Sbjct: 402 RIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLAN 461

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YAAAG+W  VA  R  +R R  +KTPGCS IE+  +V EF A +   P+   I  I+ I
Sbjct: 462 VYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGEDLGPELGGIAAIIDI 521

Query: 709 LELEIME 715
           L  ++ +
Sbjct: 522 LASQLAD 528



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 188/443 (42%), Gaps = 55/443 (12%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           MA  S++  ED     +R+C+   D +   + H   V+L       V   +V     C+G
Sbjct: 1   MAAPSLWQLEDAAIARLRACATFRDLL---RAHGLAVRLCLSQSSYVATQIVHV---CNG 54

Query: 182 GFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSG-- 234
                     R F  + +      N++I    QN     + E++ +++R       SG  
Sbjct: 55  --HGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGF 112

Query: 235 ------TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T   LL++   L + +LGR VH     S       V  +L+ MY++   L  A+
Sbjct: 113 SVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLAR 172

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-------------------- 328
            +FD M +KD V WN +ISA+ + G  +++ EL   M                       
Sbjct: 173 KVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAG 232

Query: 329 -----------GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
                      GF  D  + +A + + + +  +E G+ ++A   ++G   ++ + N+L++
Sbjct: 233 AVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALME 292

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFV 436
           MY +C  +  A ++F  +  K V+SWS+ I G   H ++ EA++LF  M  EG V  + +
Sbjct: 293 MYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGI 352

Query: 437 TIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           T + +L AC + G L E ++Y      + G+         +     + G I+ A +    
Sbjct: 353 TFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGG 412

Query: 496 EKIDSKDIITWNSMISAYAKHGD 518
             I   D   W S++SA   H D
Sbjct: 413 MPI-PPDGKIWGSLLSACRSHSD 434



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 152/339 (44%), Gaps = 50/339 (14%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           + + L  C   + L + H   + L  L Q+  +++ ++      G  + + +VF  + +P
Sbjct: 13  AIARLRACATFRDLLRAHGLAVRL-CLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAP 71

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED---------TYPFVIRSCSCLL 145
           N  L+  ++K  ++   +   + VY +M      P+           TYPF++++C  L 
Sbjct: 72  NLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLA 131

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
               G ++HA V + G +S   V ++L+E Y +C      +  + ++ F  ++ +    W
Sbjct: 132 ASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRC-----GDLSLARKVFDGMREKDAVSW 186

Query: 202 NSLISLAVQNGKSEKSFEL-------------------------------FKLMRMEGAE 230
           N+LIS   + G+  K+ EL                               F+ M+MEG E
Sbjct: 187 NTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFE 246

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            D  +++ +L +  +L +LELGR ++           + +  AL+ MY+K   +E+A  L
Sbjct: 247 PDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQL 306

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           F  MS+KD + W+  I      G  +E+++L   M R G
Sbjct: 307 FHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREG 345



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 100/202 (49%), Gaps = 11/202 (5%)

Query: 57  ILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           +  G+ +   +S N LI ++A +G +  ++++F+S+     + +  ++   +  G++   
Sbjct: 174 VFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGA 233

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           + V++QM ++   P + +   V+ +C+ L     G  I+A   K G      + +AL+E 
Sbjct: 234 VEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEM 293

Query: 176 YIKCDGGFENE----KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           Y KC G  E       GM +   KD+ S W++ I     +G++ ++ +LF++M  EG   
Sbjct: 294 YAKC-GCIEEALQLFHGMSE---KDVIS-WSTAIGGLAAHGRAREAVKLFEVMDREGRVM 348

Query: 232 DSG-TLINLLRSTVELKSLELG 252
            +G T + LL +      L+ G
Sbjct: 349 PNGITFVGLLSACSHAGLLDEG 370


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 197/631 (31%), Positives = 320/631 (50%), Gaps = 45/631 (7%)

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLD-----FISGEKIHAQVVKLGFDSFDDVGD 170
           LL + ++  + + PA  T   ++R  + LL         G ++HA  + LG      +  
Sbjct: 54  LLAFSRLR-RHLPPAAGTSHLLLRPVAALLHHHRSHLRLGVQLHALSLSLGLSRHPILLP 112

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            L+  Y        +   +       L   +N LIS  +++G   ++   ++ M   G  
Sbjct: 113 RLLSVYTSHPSLLPSAASVAADSTLPLP--YNVLISSCLRHGLPLQALAAYQEMGKNGVL 170

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
            D  T  ++LR+  E + L LGR VH  A  +    +L    AL+SMY+K   L  A+ +
Sbjct: 171 PDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKV 230

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLE------------------------------ 320
           FD M  +D V WN MIS+Y   G   E++E                              
Sbjct: 231 FDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDY 290

Query: 321 -----LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
                L+  MVR G   D  T +  +++ S +  +  GK++H   +R   D   SV N+L
Sbjct: 291 RAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNAL 350

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           I MY  C+D+ CAR +F  ++   VV+W++M+  +   D + EA  +F EM   GV+ ++
Sbjct: 351 ITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNY 410

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           VT++  L  C  +  L+H + LHG+ +K G      +  ++   Y+K G + +A  +FD 
Sbjct: 411 VTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFD- 469

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +D  D+I++ SMI+ Y   G  +   +L+ QM  S ++PD I  + +L+AC ++GLV 
Sbjct: 470 -TMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVL 528

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG  +F +M  SYG +P  EHY+ M++L  RAG +++A E++   PF P + +W  L+ A
Sbjct: 529 EGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGA 588

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C      E+ E  A KL+ M  ENAG+YVL++N+YAAAG W+ +A +R  +RD G+ K P
Sbjct: 589 CHDRGNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAP 648

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           G +W ++G     F   D+S+P A  IY +L
Sbjct: 649 GLAWTDLGNGFTPFLVGDRSNPLAPEIYVVL 679



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 241/511 (47%), Gaps = 52/511 (10%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSY-ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q+HA  + L GL ++ IL   L+  Y ++  LL  +  V    T P  L Y  ++ +  +
Sbjct: 94  QLHALSLSL-GLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLP--LPYNVLISSCLR 150

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G   + L  Y++M    + P   TYP V+R+C+   + + G  +H      G D     
Sbjct: 151 HGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFF 210

Query: 169 GDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
            +AL+  Y KC       K   GM+QR   D+ S WNS+IS     G+  ++ ELF+ MR
Sbjct: 211 QNALMSMYAKCGDLASARKVFDGMVQR---DVVS-WNSMISSYAAVGQWAEAMELFRRMR 266

Query: 226 ME-----------------------------------GAEFDSGTLINLLRSTVELKSLE 250
            E                                   GAE D  TL+  L +   +  L 
Sbjct: 267 DEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLR 326

Query: 251 LGRIVHCVAVVSDFCKDL--SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           LG+ +H +AV    C D   SV+ AL++MY++   +E A+MLF  +     V WN M+S+
Sbjct: 327 LGKEIHGLAV--RMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSS 384

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           +  S   +E+  +   M+  G + +  T +  ++  + + N++ G+++H +++++G    
Sbjct: 385 FALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGY 444

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             + NSLIDMY +   L+ A+ +FD++    ++S++SMI GY    +   ALRLF +M  
Sbjct: 445 RLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMID 504

Query: 429 EGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            G++ D + ++ +L AC + G  LE  +  +   +  G+       + +   YA+ G +E
Sbjct: 505 SGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLE 564

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            A E+ D         + W +++ A    G+
Sbjct: 565 KAEEMLDHTPFPPTSTM-WAALVGACHDRGN 594



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 178/400 (44%), Gaps = 16/400 (4%)

Query: 57  ILHGLHQNLILSSN-LIDSYANLGLLSLSQQVFNSI----TSPNSLLYGTILKNLSKFGE 111
           +  G+ Q  ++S N +I SYA +G  + + ++F  +    T  NS+ + TI     +  +
Sbjct: 230 VFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRD 289

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           Y   + + ++M          T    + +CS +     G++IH   V++  D  + V +A
Sbjct: 290 YRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNA 349

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           L+  Y +C    E  + + +         WN+++S    +  +E++  +F+ M   G + 
Sbjct: 350 LITMYARCK-DMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKP 408

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           +  T++  L     + +L+ G+ +H   V   F     +  +L+ MYSK   L  A+ +F
Sbjct: 409 NYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVF 468

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D M D D + +  MI+ Y   G    +L L   M+ SG + D    +  +S+ S    + 
Sbjct: 469 DTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVL 528

Query: 352 WGKQM-HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKG 409
            G+++ +  V+  G   Q+  ++ +ID+Y     L  A ++ D      T   W++++  
Sbjct: 529 EGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGA 588

Query: 410 YVTHDQ-----SLEALRLFSEMKLEGVEVDFVTIINILPA 444
              HD+        A R   EM+ E     +V I N+  A
Sbjct: 589 --CHDRGNIEIGERAARKLLEMRTENAG-HYVLIANMYAA 625



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           ++T     +L     N QH Q++H  +I+ HG     +L ++LID Y+  G LS++Q VF
Sbjct: 410 YVTVVTYLALCARVANLQHGQELHG-HIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVF 468

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           +++   + + Y +++      G+    L +++QM    + P       V+ +CS     +
Sbjct: 469 DTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVL 528

Query: 149 SGEKI-HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLIS 206
            GE++ +  V+  G     +    +++ Y +  G  E  + M+    F    + W +L+ 
Sbjct: 529 EGEELFNKMVISYGIKPQMEHYSCMIDLYARA-GLLEKAEEMLDHTPFPPTSTMWAALVG 587

Query: 207 LAVQNGK---SEKSFELFKLMRMEGA 229
                G     E++      MR E A
Sbjct: 588 ACHDRGNIEIGERAARKLLEMRTENA 613


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/635 (31%), Positives = 350/635 (55%), Gaps = 10/635 (1%)

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            VF+ +   N + + T++ +  K   Y + +  +  M  QS+ P+  T+  +  + S L 
Sbjct: 176 NVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLG 235

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSL 204
           D  + +  +  + K G     DV        +  D G  +   M+  R        WN++
Sbjct: 236 DSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTM 295

Query: 205 ISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           I   VQN    ++ ++F + +  E    D  TL+++L +  +L+ ++L    H   + S 
Sbjct: 296 IVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSL 355

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
               + +  A++ MYS+   ++ +  +FDKM ++D V WN +ISA+ Q+GF +E+L L+ 
Sbjct: 356 PGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVC 415

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M +  F  D  TA A +S+ S ++N+  GKQ HA ++R G  ++  + + LIDMY +  
Sbjct: 416 EMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFE-GMESYLIDMYAKSG 474

Query: 384 DLNCARKIFDS--VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
            +  A  +F+      +   +W+++I GY  +  + +A+ L  +M ++ V  + VT+ +I
Sbjct: 475 SIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASI 534

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           LPAC ++G++   + LHG+S++  L     V T++  +Y+KCG I  A  +F   +   K
Sbjct: 535 LPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVF--LRTPEK 592

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           + +T+ +M+  Y +HG   +   LY  M +S +RPD +TF+ +L+AC  +GLV+EG  IF
Sbjct: 593 NSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIF 652

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLLSACKMHS 620
           + M++ +  +PS EHY  + ++LGR G + EA E VK +    +   +WG LL +C+ H 
Sbjct: 653 ESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHG 712

Query: 621 ETELAELTAEKLIS--MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
             EL +  A+KL++  M+   AG +VLLSNIYA  G+W  V ++R  ++++GL K  GCS
Sbjct: 713 HFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCS 772

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           W+EI   V+ F + D+ HPQ+  IY +L +L L++
Sbjct: 773 WVEIAGFVNCFVSRDEKHPQSSEIYYMLDMLTLDM 807



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 139/586 (23%), Positives = 269/586 (45%), Gaps = 57/586 (9%)

Query: 79  GLLSLSQQVFNSITSP-----NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           G   L+  + +S+  P     NS++ G I  NL       + LL+Y +M   S     D 
Sbjct: 63  GQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLP-----HQALLLYAKMRSNSSCSTFDP 117

Query: 134 YPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDD----VGDALVEFYIKCDGGFENEK 187
           Y F   +++C+   D ++G+ IH+  ++   ++       V ++L+  Y  C   +    
Sbjct: 118 YTFSSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQHEYALNV 177

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
             + R+   +   WN+LI   V+  +  ++ E F  M  +       T +NL  +  +L 
Sbjct: 178 FDVMRRRNVVA--WNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLG 235

Query: 248 SLELGRIVHCV--AVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
                ++ +         +  D+ V ++ + M+S +  ++ A+M+FD+  +K+  +WN M
Sbjct: 236 DSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTM 295

Query: 306 ISAYYQSGFPKESLELLMCMVRS--GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
           I AY Q+  P E++++ +  + S  G   D+ T ++ ++++S ++ I+  +Q HA V+++
Sbjct: 296 IVAYVQNNCPVEAIDVFIQALESEEGVCDDV-TLLSVLTAVSQLQQIKLAEQFHAFVIKS 354

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                + + N+++ MY  C  ++ + K+FD +  +  VSW+++I  +V +    EAL L 
Sbjct: 355 LPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLV 414

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            EM+ +   +D VT   +L A  N+  L   K  H Y ++ G+     + + +   YAK 
Sbjct: 415 CEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQ-FEGMESYLIDMYAKS 473

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I  A  LF++     +D  TWN++I+ Y ++G   +   L  QM   +V P+ +T   
Sbjct: 474 GSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLAS 533

Query: 544 LLTACVNAG---------------LVEEGRIIFKEMKESYGY---------------EPS 573
           +L AC + G                +E+   +   + ++Y                 E +
Sbjct: 534 ILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKN 593

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDM---PFKPDARVWGPLLSAC 616
              Y +M+   G+ G    A  L   M     +PDA  +  +LSAC
Sbjct: 594 SVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSAC 639


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/506 (35%), Positives = 292/506 (57%), Gaps = 7/506 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           +N LI   ++ G  E +  LF +++       D  T+ N ++S   +  L +GR V   A
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
               F  D  V  +L+ MY+    +  A +LF  +  K  + WN MI+ Y ++G  KE +
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257

Query: 320 ELL--MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           E+   M  VR+ F  D  T ++  ++   + +   G+ +       G     ++  +L+D
Sbjct: 258 EMFKGMLEVRAPF--DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVD 315

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
           MY +C +L+ AR++FD + ++ VV+WS+MI GY   D+  EAL +F+EM+   V  + VT
Sbjct: 316 MYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVT 375

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           ++++L AC  +GALE  K++H Y  +  L     + TA+   YAKCGCI+ A + F  E 
Sbjct: 376 MVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAF--ES 433

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  ++  TW ++I   A +G   +  +L++ M ++++ P  +TF+G+L AC +  LVEEG
Sbjct: 434 MPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEG 493

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           R  F  M + YG  P  EHY  MV+LLGRAG +DEA + +++MP +P+A VW  LLSAC 
Sbjct: 494 RRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACT 553

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
           +H   E+ E   ++++ ++P ++GNY+LLSN YA+ G+W   A +R  ++++G++K PGC
Sbjct: 554 VHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGC 613

Query: 678 SWIEIGKLVHEFWAADQSHPQADAIY 703
           S IE+   + EF+A D  HPQ   IY
Sbjct: 614 SLIELEGTIFEFFAEDSEHPQLTEIY 639



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 165/364 (45%), Gaps = 9/364 (2%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y    G   +  + ++LI  YA+ G +  +  +F+++     + +  ++    K G++++
Sbjct: 196 YAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKE 255

Query: 115 TLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
            + ++K M L+   P ++ T   V  +C  L D   G+ I     + G     ++  ALV
Sbjct: 256 VVEMFKGM-LEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALV 314

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
           + Y KC G  +  + +  R        W+++IS   Q+ +  ++  +F    M+G E + 
Sbjct: 315 DMYAKC-GELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFN--EMQGTEVNP 371

Query: 234 G--TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
              T++++L +   L +LE G+ VH      D    + + TAL+  Y+K   ++DA   F
Sbjct: 372 NDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAF 431

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           + M  ++   W  +I     +G  +E+LEL   M+ +       T I  + + S    +E
Sbjct: 432 ESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVE 491

Query: 352 WGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKG 409
            G++   ++ ++ G   ++  +  ++D+      ++ A +   ++  +   V W +++  
Sbjct: 492 EGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551

Query: 410 YVTH 413
              H
Sbjct: 552 CTVH 555



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 123/272 (45%), Gaps = 19/272 (6%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           +L Q  A Y    G+ ++  L++ L+D YA  G L  ++++F+ + S + + +  ++   
Sbjct: 289 NLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGY 348

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           ++     + L ++ +M    + P + T   V+ +C+ L    +G+ +H+ + +       
Sbjct: 349 TQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTV 408

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-------RWNSLISLAVQNGKSEKSFE 219
            +G ALV+FY KC        G I+   K  +S        W +LI     NG+S ++ E
Sbjct: 409 ILGTALVDFYAKC--------GCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALE 460

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF--CKDLSVNTALLSM 277
           LF  M     E    T I +L +      +E GR  H  ++  D+  C  +     ++ +
Sbjct: 461 LFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGR-RHFTSMTQDYGICPRIEHYGCMVDL 519

Query: 278 YSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
             +   +++A      M  + + VVW  ++SA
Sbjct: 520 LGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 200/685 (29%), Positives = 366/685 (53%), Gaps = 29/685 (4%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           L  C  P+H   +HA  +  H    +L L + L+ +Y  LG    ++++ + +   N++ 
Sbjct: 24  LRSCSAPRHAAAVHAHIVRAHP-SPSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVS 80

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQV 157
           +  ++   S+ G+ E +L  + +    +   A+  TY   + +CS       G+ +HA  
Sbjct: 81  FNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALS 140

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGK 213
           V  G      V ++LV  Y +C      + G  ++ F     R    WN+L+S  V+ G 
Sbjct: 141 VLEGIAGGVFVSNSLVSMYARC-----GDMGQARQVFDAADERDDVSWNALVSGYVRAGA 195

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTV--ELKSLELGRIVHCVAVVSDFCKDLSVN 271
            +    +F +MR  G   +S  L ++++     +   +++   VH   V + F  D+ + 
Sbjct: 196 QDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLA 255

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS------AYYQSGFPKESLELLMCM 325
           +A++ MY+K  +L +A  LF  + D + VV+N MI+      A   +   +E+L L   +
Sbjct: 256 SAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEV 315

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN---GSDYQVSVHNSLIDMYCEC 382
              G     FT  + + + +   +IE+GKQ+H  VL++   G D+   + ++LID+Y   
Sbjct: 316 QSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDF---IGSALIDLYLNS 372

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +    + F SV  + VV+W++MI G V ++    AL LF E+   G++ D  TI +++
Sbjct: 373 GCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVM 432

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            AC ++      + +  ++ K G    +++  +    YA+ G +  A   F E  ++S D
Sbjct: 433 NACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQE--MESHD 490

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I++W+++IS++A+HG      + + +M  + V P+ ITFLG+LTAC + GLV+EG   ++
Sbjct: 491 IVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYE 550

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            MKE Y   P+ +H   +V+LLGRAG + +A   ++D  F  +  +W  LL++C++H + 
Sbjct: 551 TMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDM 610

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           E  +L A++++ ++P ++ +YV L NIY  AG+ +  +K+R  +++RG+KK PG SWIE+
Sbjct: 611 ERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIEL 670

Query: 683 GKLVHEFWAADQSHPQADAIYTILG 707
              VH F A D+SHP+++AIY+ L 
Sbjct: 671 RSGVHSFVAGDKSHPESNAIYSKLA 695


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 202/636 (31%), Positives = 312/636 (49%), Gaps = 97/636 (15%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + +I +YAN G L+ ++++F      + + + +++    ++G   + L ++ +M  +   
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T+  V+R CS  +    G++IHA  +K  FDS   V   LV+ Y KC    E E  
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
                 K     W ++++   QNG   K+ E F+ MR EG E +  T  ++L +   + +
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
              G  VH   V S F  ++ V +AL+ MYSK   L +A+ + + M   D V WN MI  
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
             + G  +E+L L   M     + D FT                              Y 
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFT------------------------------YP 345

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             V+N+L+DMY +    + A  +F+ +  K V+SW+S++ G V +    EALRLF EM++
Sbjct: 346 SLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 405

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G+  D + I  +                           LS+++ ++   YAKCGCIE 
Sbjct: 406 MGIHPDQIVIAAV---------------------------LSALDNSLVSMYAKCGCIED 438

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A ++FD  +I  +D+ITW ++I  YA++G                               
Sbjct: 439 ANKVFDSMEI--QDVITWTALIVGYAQNG------------------------------- 465

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
                   GR  F+ M+E YG +P  EHYA M++LLGR+G + EA+EL+  M  +PDA V
Sbjct: 466 -------RGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATV 518

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           W  LL+AC++H   EL E  A  L  +EP+NA  YVLLSN+Y+AAGKW   AK R  ++ 
Sbjct: 519 WKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKL 578

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYT 704
           RG+ K PGCSWIE+   VH F + D+SHP+   IY+
Sbjct: 579 RGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYS 614



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 196/462 (42%), Gaps = 89/462 (19%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-------------------- 313
           +LS  SK   ++DA+ LFD M D+D   WN MI AY  SG                    
Sbjct: 47  VLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITW 106

Query: 314 -----------FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
                         E+LEL   M   G R + FT  + +   S    +E GKQ+HA+ ++
Sbjct: 107 SSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIK 166

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKGYVTHDQSLEALR 421
              D    V   L+DMY +C+ +  A  +F+ +   +  V W++M+ GY  +    +A+ 
Sbjct: 167 TQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIE 226

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F +M+ EG+E +  T  +IL AC +I A      +HG  ++ G  +   V +A+   Y+
Sbjct: 227 CFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYS 286

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISA----------------------------- 512
           KCG +  A  + +  ++D  D ++WNSMI                               
Sbjct: 287 KCGDLSNARRMLETMEVD--DPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344

Query: 513 -----------YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
                      YAK G +   F ++ +M   DV    I++  L+T CV+ G  EE   +F
Sbjct: 345 PSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDV----ISWTSLVTGCVHNGSYEEALRLF 400

Query: 562 KEMKESYGYEPSQEHYA--------SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
            EM+   G  P Q   A        S+V++  + G +++A ++   M  + D   W  L+
Sbjct: 401 CEMR-IMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALI 458

Query: 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
                +        + E++  ++P    +Y  + ++   +GK
Sbjct: 459 VGYAQNGRGRDYFQSMEEVYGIKP-GPEHYACMIDLLGRSGK 499



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 14/138 (10%)

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTA-----IFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
           LEH +  H   ++  +NS  +V+++     +  + +KCG ++ A +LFD   +  +D  +
Sbjct: 19  LEHTELNH--HIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFD--VMPDRDECS 74

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN+MI AYA  G  ++  KL+    ++ +R   IT+  L++     G   E   +F EM+
Sbjct: 75  WNTMIGAYANSGRLNEARKLFY---ETPIR-SCITWSSLISGYCRYGCDVEALELFWEMQ 130

Query: 566 ESYGYEPSQEHYASMVNL 583
              G  P+Q  + S++ +
Sbjct: 131 YE-GERPNQFTWGSVLRV 147



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 28/169 (16%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +H R++ +       ++++ L+D YA  G    +  VF  +T  + + + +++      G
Sbjct: 332 MHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNG 391

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
            YE+ L ++ +M +  ++P +     VI +    LD                       +
Sbjct: 392 SYEEALRLFCEMRIMGIHPDQ----IVIAAVLSALD-----------------------N 424

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
           +LV  Y KC    +  K     + +D+ + W +LI    QNG+    F+
Sbjct: 425 SLVSMYAKCGCIEDANKVFDSMEIQDVIT-WTALIVGYAQNGRGRDYFQ 472


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 304/527 (57%), Gaps = 5/527 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+I    +    ++   L+  M  EG + DS T    L++   L  L++G I+   AV
Sbjct: 52  WNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAV 111

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              +  D+ V +++L++Y+K   ++ AK++FDKM  +D V W  MI+ + QSG P ++++
Sbjct: 112 DFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAID 171

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M +     D    +  + + +++ + ++G  +H +++R   +    +  SLIDMY 
Sbjct: 172 IYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYA 231

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   L  A ++F+ +  K+V+SW ++I G+  +  + + L    EM+  G + D V++I+
Sbjct: 232 KNGKLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLIS 291

Query: 441 ILPACVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            L AC  +G L+  K LHG+ +K L L+ +S   TA+   YAKCG +  A  LFD+  I+
Sbjct: 292 SLSACAQVGNLKVGKSLHGHIVKRLYLDKVSG--TALIDMYAKCGALTFARALFDQ--IE 347

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D+I WN+MIS+Y  HGD  +   L+ +MK++++ PD  TF  LL+AC ++GLVEEG+ 
Sbjct: 348 PRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQY 407

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  + +    +PS++HYA MV+LL RAG ++EA +L++ M  KP   +W  LLS C  H
Sbjct: 408 WFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNH 467

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
               + E+ A+K++   P++ G YVL+SN ++ A KW+  A  R  +++ G++K PG S 
Sbjct: 468 KNLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSA 527

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKF 726
           +E+   +  F   D++H Q   I  IL IL+ E+   R  S  EL F
Sbjct: 528 VEVNGDLQAFLMEDKNHNQYQDILQILDILDNEMRSIRCFSETELVF 574



 Score =  183 bits (464), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/523 (26%), Positives = 253/523 (48%), Gaps = 43/523 (8%)

Query: 48  LQQIHARYIILHGLHQNLILS-SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           + QIHA  I+  GL  N   S + LI SY  +  +  ++ VF  +   +   + +++   
Sbjct: 1   MTQIHA-LILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAY 59

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDS 164
           S+    ++ L +Y +M  + + P   T+   +++CS L+D   GE I  Q V  G  FD 
Sbjct: 60  SRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDV 119

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
           F  V  +++  Y K  G  +  K +  +  K     W ++I+   Q+G+   + ++++ M
Sbjct: 120 F--VVSSVLNLYAKS-GKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTM 176

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
           + E  E D   ++ L+++   L   + G  VH   V  +   D  + T+L+ MY+K   L
Sbjct: 177 QKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKL 236

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           E A  +F+ +  K  + W  +IS + Q+GF  ++L  L+ M  SGF+ DL + I+++S+ 
Sbjct: 237 ELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSAC 296

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + + N++ GK +H ++++     +VS   +LIDMY +C  L  AR +FD ++ + ++ W+
Sbjct: 297 AQVGNLKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIEPRDLILWN 355

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           +MI  Y  H   +EAL LF +MK   +  D  T  ++L AC + G +E  +Y        
Sbjct: 356 AMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHV---- 411

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
                                      L D+ KI   +   +  M+   ++ G   + ++
Sbjct: 412 ---------------------------LIDKSKIQPSE-KHYACMVDLLSRAGQVEEAYQ 443

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           L   M    ++P L  ++ LL+ C+N   +  G ++ K++ ES
Sbjct: 444 LIESMH---IKPGLAIWVALLSGCLNHKNLLIGEMVAKKILES 483



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 206/387 (53%), Gaps = 9/387 (2%)

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  D +    L++ Y ++ ++  A+ +F+KM  +    WN MI AY ++ +P E L L  
Sbjct: 14  FFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYY 73

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M+  G + D  T    + + S++ +++ G+ +    +  G  + V V +S++++Y +  
Sbjct: 74  RMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSG 133

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            ++ A+ +FD +  + VVSW++MI G+    + L+A+ ++  M+ E  E D V ++ ++ 
Sbjct: 134 KMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQ 193

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC ++G  +    +HG+ ++  +N  + + T++   YAK G +E+A  +F  E I  K +
Sbjct: 194 ACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVF--EGIPYKSV 251

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           I+W ++IS +A++G  ++      +M+ S  +PDL++ +  L+AC   G ++ G+ +   
Sbjct: 252 ISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGH 311

Query: 564 M-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE- 621
           + K  Y  + S     +++++  + G +  AR L   +  + D  +W  ++S+  +H + 
Sbjct: 312 IVKRLYLDKVSG---TALIDMYAKCGALTFARALFDQIEPR-DLILWNAMISSYGIHGDG 367

Query: 622 -TELAELTAEKLISMEPENAGNYVLLS 647
              L+     K  ++ P++A    LLS
Sbjct: 368 IEALSLFLKMKETNITPDHATFASLLS 394


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 328/652 (50%), Gaps = 76/652 (11%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           ++  Y+  G L L+  +F +I  P++  Y T+L  L+          ++ +M      P 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM------PV 128

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD-------ALVEFYIKCDGGF 183
            D+  + +         IS    H  +V L    FD   +        ++  Y++ +G  
Sbjct: 129 RDSVTYNV--------MISSHANHG-LVSLARHYFDLAPEKDAVSWNGMLAAYVR-NGRV 178

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           E  +G+   + +     WN+L+S  VQ GK  ++ ELF   RM G +  S    N++ S 
Sbjct: 179 EEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFD--RMPGRDVVS---WNIMVSG 233

Query: 244 VELKS--LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
              +   +E  R+     V     +D+   TA++S Y++   LE+A+ +FD M +++ V 
Sbjct: 234 YARRGDMVEARRLFDAAPV-----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS 288

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN M++AY Q     E+ EL   M                                    
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMP----------------------------------C 314

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           RN     V+  N+++  Y +   L  A+ +FD++  K  VSW++M+  Y     S E L+
Sbjct: 315 RN-----VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF EM   G  V+      +L  C +I ALE    LHG  ++ G      V  A+   Y 
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A   F+E  ++ +D+++WN+MI+ YA+HG   +  +++  M+ +  +PD IT 
Sbjct: 430 KCGNMEDARNAFEE--MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L AC ++GLVE+G   F  M   +G     EHY  M++LLGRAG + EA +L+KDMP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           F+PD+ +WG LL A ++H   EL    AEK+  +EPENAG YVLLSNIYA++GKW    K
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           MR  + +RG+KK PG SWIE+   VH F A D  HP+ + IY  L  L++ +
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRM 659



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 124/253 (49%), Gaps = 13/253 (5%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +N+   + ++  YA  G+L  ++ VF+++   +++ +  +L   S+ G  E+TL ++ +M
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                +     +  V+ +C+ +     G ++H ++++ G+     VG+AL+  Y KC G 
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC-GN 433

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            E+ +      F++++ R    WN++I+   ++G  +++ E+F +MR    + D  TL+ 
Sbjct: 434 MEDARN----AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMS- 295
           +L +      +E G I +  ++  DF         T ++ +  +   L +A  L   M  
Sbjct: 490 VLAACSHSGLVEKG-ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 548

Query: 296 DKDRVVWNIMISA 308
           + D  +W  ++ A
Sbjct: 549 EPDSTMWGALLGA 561


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 194/567 (34%), Positives = 303/567 (53%), Gaps = 14/567 (2%)

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           H   +K G  +     + ++  Y KC      E  +  + F +   R    WN++I+  V
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKC-----GEIRIASKMFGETSQRDAVSWNTMIAGFV 76

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
             G  E + E  K M+  G   D  +  ++L+    +  +E+G+ VH + V   +  ++ 
Sbjct: 77  NLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVF 136

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
             +ALL MY+K   +EDA  +F  ++ ++ V WN +IS Y Q G    +  LL CM   G
Sbjct: 137 AGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEG 196

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D  T    ++ +      +   Q+HA ++++G     +V N++I  Y EC  +  A 
Sbjct: 197 VEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAE 256

Query: 390 KIFD-SVKTKTV--VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
           ++FD +++T+ +  VSW+S++ G+     S +AL+ F  M+ + V +D      +L +C 
Sbjct: 257 RVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCS 316

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++  L+  + +H   +K G      V +++   Y+KCG IE A + FD    DS   I W
Sbjct: 317 DLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSS--IAW 374

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           NS+I  YA+HG       L+  MK   V+ D ITF+ +LTAC + GLVEEG    K M+ 
Sbjct: 375 NSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMES 434

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            YG  P  EHYA M++LLGRAG +DEA+ L++ MPF+PDA VW  LL AC+   + ELA 
Sbjct: 435 DYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELAS 494

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
             A  L+ +EPE    YVLLS+++    +WN  A ++  +++RG+KK PG SWIE+   V
Sbjct: 495 QVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEV 554

Query: 687 HEFWAADQSHPQADAIYTILGILELEI 713
             F A D+SHP  + IY  LG L  EI
Sbjct: 555 RSFNAEDRSHPNCEEIYLRLGELMEEI 581



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 227/475 (47%), Gaps = 24/475 (5%)

Query: 57  ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL 116
           I  G   ++  ++N+I  YA  G + ++ ++F   +  +++ + T++      G +E  L
Sbjct: 26  IKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETAL 85

Query: 117 LVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
              K M       A D Y F  +++  +C+     G+++H+ +VK+G++     G AL++
Sbjct: 86  EFLKSMKRYGF--AVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLD 143

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKS-------RWNSLISLAVQNGKSEKSFELFKLMRME 227
            Y KC+         ++  F+  KS        WN+LIS   Q G    +F L   M +E
Sbjct: 144 MYAKCE--------RVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELE 195

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E D GT   LL    +    +L   VH   V      D +V  A+++ YS+  S+EDA
Sbjct: 196 GVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDA 255

Query: 288 KMLFD---KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           + +FD   +  D D V WN +++ + QSG  +++L+    M       D +   A + S 
Sbjct: 256 ERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSC 315

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S +  ++ G+Q+H  VL++G +    V +SLI MY +C  +  ARK FD+    + ++W+
Sbjct: 316 SDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWN 375

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMK 463
           S+I GY  H +   AL LF  MK   V++D +T + +L AC +IG +E    +L      
Sbjct: 376 SLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESD 435

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            G+         +     + G ++ A  L +    +  D + W +++ A    GD
Sbjct: 436 YGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFE-PDAMVWKTLLGACRTCGD 489



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 131/272 (48%), Gaps = 13/272 (4%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL---LYGTILKNL 106
           Q+HA+ I+ HGL  +  + + +I +Y+  G +  +++VF+       L    + +IL   
Sbjct: 222 QVHAK-IVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGF 280

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDS 164
           S+ G  E  L  ++ M  +S Y   D Y F  V+RSCS L     G+++H  V+K GF+ 
Sbjct: 281 SQSGLSEDALKFFENM--RSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEP 338

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
              V  +L+  Y KC G  E+ +       KD    WNSLI    Q+G+ + + +LF LM
Sbjct: 339 NGFVASSLIFMYSKC-GVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLM 397

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC--KDLSVNTALLSMYSKLA 282
           +    + D  T + +L +   +  +E G      ++ SD+     +     ++ +  +  
Sbjct: 398 KDRRVKLDHITFVAVLTACSHIGLVEEG-WSFLKSMESDYGIPPRMEHYACMIDLLGRAG 456

Query: 283 SLEDAKMLFDKMS-DKDRVVWNIMISAYYQSG 313
            L++AK L + M  + D +VW  ++ A    G
Sbjct: 457 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCG 488



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           AL      H  ++K G  +       I   YAKCG I +A ++F E     +D ++WN+M
Sbjct: 14  ALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGE--TSQRDAVSWNTM 71

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I+ +   G++    +    MK+     D  +F  +L      G VE G+ +   M +  G
Sbjct: 72  IAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVK-MG 130

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           YE +    ++++++  +   +++A E+ K +  + ++  W  L+S 
Sbjct: 131 YEGNVFAGSALLDMYAKCERVEDAFEVFKSINIR-NSVTWNALISG 175


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 175/480 (36%), Positives = 279/480 (58%), Gaps = 7/480 (1%)

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G + D+ T   ++++   L+  E G  +H   V   +   + ++ +L++MY K    E +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD+M DK+ V W+ +I A  Q    KE   L   M+  G R    +  A +++++ +
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNAMACV 121

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           ++ E    ++  V+ NG D+  SV ++   M+  C  +  ARK+FD + +K +V+W++ I
Sbjct: 122 RSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTI 181

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY-SMKLGL 466
           + YV  D  LEAL L  +M L+G+  D +T++ ++ AC  + + +    +HG  +     
Sbjct: 182 EAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFY 241

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           N L +V TA+   Y KCG +  A ++FD   +  ++IITW++MIS Y  HG   +   L+
Sbjct: 242 NQLLAVETALIDLYVKCGSLTYARKVFD--GMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            QMK S V+PD ITF+ +L+AC ++GLV EG   F  M   +G  P  EHYA MV++LGR
Sbjct: 300 DQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG +DEA + ++ MP +P+A VWG LL AC++H   +LAE+ A  L  ++P NAG YV+L
Sbjct: 359 AGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVIL 418

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            NIY   GK      +RT +++RG+KK  G S IEI   ++ F A D+SHPQ D IY+ L
Sbjct: 419 YNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSEL 478



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 174/323 (53%), Gaps = 8/323 (2%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+PF+I++CSCL  F  G +IH  VVK G+ S   + ++L+  Y KCD  +E  + 
Sbjct: 8   PDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK-YELSRQ 66

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           +           W+++I   +Q+ + ++ F LF+ M  EG+    G ++N +     ++S
Sbjct: 67  VFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC---VRS 123

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
            E    V+ V V +    D SV +A   M+++   +E A+ LFD +  KD V W   I A
Sbjct: 124 HEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEA 183

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y ++  P E+L LL  M+  G   D  T +  + + ST+ + +    +H  ++  G  Y 
Sbjct: 184 YVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG-IITTGFFYN 242

Query: 369 --VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             ++V  +LID+Y +C  L  ARK+FD ++ + +++WS+MI GY  H    EAL LF +M
Sbjct: 243 QLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM 302

Query: 427 KLEGVEVDFVTIINILPACVNIG 449
           K   V+ D +T ++IL AC + G
Sbjct: 303 K-ASVKPDHITFVSILSACSHSG 324



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 170/352 (48%), Gaps = 7/352 (1%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M+R G + D FT    + + S +++ E+G ++H +V++ G   QV + NSLI MY +C+ 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
              +R++FD +  K  VSWS++I   +  D+  E   LF +M  EG       I+N + A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-A 119

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           CV   + E    ++   ++ GL+   SV +A    +A+CG +E+A +LFD   I SKD++
Sbjct: 120 CVR--SHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFD--GIMSKDLV 175

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           TW + I AY K     +   L  QM    + PD IT LG++ AC      +   I+   +
Sbjct: 176 TWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGII 235

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS-ETE 623
              + Y        ++++L  + G +  AR++   M  + +   W  ++S   MH    E
Sbjct: 236 TTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISGYGMHGWGRE 294

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
              L  +   S++P++     +LS    +     G     +  RD G+   P
Sbjct: 295 ALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRP 346



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 155/329 (47%), Gaps = 20/329 (6%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANL 78
           P N T P         ++  C   +H +   +IH + ++  G    + +S++LI  Y   
Sbjct: 8   PDNFTFPF--------IIKACSCLRHFEFGIRIH-QDVVKFGYQSQVFISNSLITMYGKC 58

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
               LS+QVF+ +   N++ +  I+    +    ++   +++QM  +   P+      ++
Sbjct: 59  DKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGA---IL 115

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDL 197
            + +C+      + ++  VV+ G D    V  A    + +C G  E  + +      KDL
Sbjct: 116 NAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARC-GRVEVARKLFDGIMSKDL 174

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
            + W + I   V+     ++  L K M ++G   D+ TL+ ++R+   L S +L  IVH 
Sbjct: 175 VT-WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHG 233

Query: 258 VAVVSDFCKD-LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
           +     F    L+V TAL+ +Y K  SL  A+ +FD M +++ + W+ MIS Y   G+ +
Sbjct: 234 IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGR 293

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           E+L L   M ++  + D  T ++ +S+ S
Sbjct: 294 EALNLFDQM-KASVKPDHITFVSILSACS 321


>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
 gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
          Length = 623

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 194/603 (32%), Positives = 324/603 (53%), Gaps = 7/603 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +++H++ +I +GL  +  L + L+  Y   G L  ++  F  I   N   +  ++  L +
Sbjct: 22  RRVHSQ-MISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNVFSWTILISLLVQ 80

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            GE  + L + K M L+     + T+  ++ +CS   D   G+KIH +V   G ++    
Sbjct: 81  NGEASEGLELLKFMDLEGTEANKITFISLLGACSVTGDLSLGKKIHERVRAKGLETDIIT 140

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G+AL+  Y  CD   E      +  F+D+ S W  +IS     G   ++ +L++ M  E 
Sbjct: 141 GNALLNMYTTCDSLDEARLVFERMVFRDVVS-WTIIISAYAHAGYPLEALQLYRRMEQEF 199

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
           +  D+ TLI++L +   L++L  G+ +H   V S    D+ V TA++S Y K  +++DA+
Sbjct: 200 SRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEAVDDAR 259

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD++ DKD V WN MI AY Q+   +++  L + MV +  R +  T I  + S S+  
Sbjct: 260 QVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTC 319

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF--DSVKTKTVVSWSSM 406
            +E G  +H      G     SV N+LI+MY +C  L  A ++F   + +T  V++W++M
Sbjct: 320 KMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNVITWNTM 379

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I      D +LEAL+++  M  EG++   VT   +L  C N G     + +H  S+  G 
Sbjct: 380 IVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGDFTTGREVHSRSLATGC 439

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            S   V  ++   Y  CG +E A   F  E + SK++++W+S+++AYA++G+  +   L+
Sbjct: 440 CS-DVVQNSLICLYGGCGNLEAAQTAF--ESVASKNVVSWSSIVAAYARNGEEDRARNLF 496

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
             M Q  V P+++TF  +L AC +AGL +EG   F  M+  +  EP+ EHY  MVNLL +
Sbjct: 497 WTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAK 556

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           +G + +A   +  MP +PDA  W  LL AC++H++ E   L A++L+  EP N+  YVLL
Sbjct: 557 SGRVKQAASFMSAMPVQPDASAWRSLLGACEVHTDKEYGALAAKQLLDAEPRNSAAYVLL 616

Query: 647 SNI 649
            NI
Sbjct: 617 YNI 619



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 258/500 (51%), Gaps = 14/500 (2%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           DTY  +++          G ++H+Q++  G D    +G+ LV+ Y +C G  ++ +    
Sbjct: 3   DTYEALLKQYGNSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRC-GSLDDARA--- 58

Query: 192 RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
             F+ +  R    W  LISL VQNG++ +  EL K M +EG E +  T I+LL +     
Sbjct: 59  -AFRGIHQRNVFSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGACSVTG 117

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            L LG+ +H          D+    ALL+MY+   SL++A+++F++M  +D V W I+IS
Sbjct: 118 DLSLGKKIHERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIIS 177

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           AY  +G+P E+L+L   M +   R D  T I+ + + ++++ +  GK +H  ++ +G + 
Sbjct: 178 AYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVET 237

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            V V  +++  Y +CE ++ AR++FD +  K +V W++MI  Y  +    +A  L+ EM 
Sbjct: 238 DVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMV 297

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
              +  + VT+I +L +C +   +E    LH  +   G  S +SV  A+   YAKCG +E
Sbjct: 298 ENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLE 357

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  +F E    + ++ITWN+MI A A+     +  ++Y +M Q  ++   +T+  +L  
Sbjct: 358 NATRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAV 417

Query: 548 CVNAGLVEEGRIIF-KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           C N G    GR +  + +      +  Q    S++ L G  G+++ A+   + +  K + 
Sbjct: 418 CANFGDFTTGREVHSRSLATGCCSDVVQN---SLICLYGGCGNLEAAQTAFESVASK-NV 473

Query: 607 RVWGPLLSACKMHSETELAE 626
             W  +++A   + E + A 
Sbjct: 474 VSWSSIVAAYARNGEEDRAR 493


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 202/672 (30%), Positives = 349/672 (51%), Gaps = 39/672 (5%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL  C   + LQ+   IHA+ ++  G   ++ L+++L++ YA  G +  ++ VF SIT+ 
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQ-LLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNK 74

Query: 95  NSLLYGTILKNLSKFGE--YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           + + +  ++   S+ G   Y   + ++++M  ++  P   T+  V  + S   +   G +
Sbjct: 75  DVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQ 134

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
            HA  +K    +D F  VG +L+  Y K     +  K      F  +  R    W ++IS
Sbjct: 135 AHALAIKTSNFYDVF--VGSSLINMYCKIGCMLDARK-----VFDTIPERNTVSWATIIS 187

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
                  + +++ELF LMR E    D     ++L +      +  G+ +HC+A+ +    
Sbjct: 188 GYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLS 247

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
             SV  AL++MY K   L+DA   F+   DKD + W+ MI+ Y Q+G   E+L L   M 
Sbjct: 248 IASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMH 307

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            +G +   FT +  +++ S +  +E GKQ+H   L+ G + Q+        +  +C  L 
Sbjct: 308 LNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKCGSLV 367

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            ARK FD +K   +V W+S                    M++E +    +T+ ++L AC 
Sbjct: 368 DARKGFDYLKEPDIVLWTS------------------CRMQMERIMPHELTMASVLRACS 409

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++ ALE  K +H  ++K G +    + +A+   YAKCG +E    +F   ++ S+DI+TW
Sbjct: 410 SLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVF--RRMPSRDIMTW 467

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+MIS  +++G+  +  +L+ +++    +PD +TF+ +L+AC + GLVE G++ F+ M +
Sbjct: 468 NAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLD 527

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G  P  EHYA MV++L RAG + E +E ++         +W  LL AC+ +   EL  
Sbjct: 528 EFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGA 587

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
              EKL+ +  + +  Y+LLS+IY A G+ + V ++R  ++ RG+ K PGCSWIE+   V
Sbjct: 588 YAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQV 647

Query: 687 HEFWAADQSHPQ 698
           H F   DQ HPQ
Sbjct: 648 HVFVVGDQIHPQ 659



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 149/548 (27%), Positives = 249/548 (45%), Gaps = 27/548 (4%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M L  + P   ++  ++  C+   D   G+ IHAQ+++ G  S   + ++LV  Y KC  
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF--ELFKLMRMEGAEFDSGTLINL 239
             + +        KD+ S WN LI+   Q G    SF  ELF+ MR E    +  T   +
Sbjct: 61  IVKAKLVFESITNKDVVS-WNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGV 119

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
             +         G   H +A+ +    D+ V ++L++MY K+  + DA+ +FD + +++ 
Sbjct: 120 FTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNT 179

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V W  +IS Y       E+ EL + M R     D F   + +S+++    + +GKQ+H  
Sbjct: 180 VSWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCL 239

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            L+NG     SV N+L+ MY +C  L+ A K F+    K  ++WS+MI GY     S EA
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEA 299

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF  M L G +    T + ++ AC +IGALE  K +HGYS+K G              
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYL 359

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
            AKCG +  A + FD  K    DI+ W S                   +M+   + P  +
Sbjct: 360 KAKCGSLVDARKGFDYLK--EPDIVLWTS------------------CRMQMERIMPHEL 399

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T   +L AC +   +E+G+ I  +  + YG+       +++  +  + G +++   + + 
Sbjct: 400 TMASVLRACSSLAALEQGKQIHAQTIK-YGFSLEVPIGSALSTMYAKCGSLEDGNLVFRR 458

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP + D   W  ++S    + E   A    E+L         +YV   N+ +A      V
Sbjct: 459 MPSR-DIMTWNAMISGLSQNGEGLKALELFEEL--RHGTTKPDYVTFVNVLSACSHMGLV 515

Query: 660 AKMRTFLR 667
            + + + R
Sbjct: 516 ERGKVYFR 523


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/665 (29%), Positives = 362/665 (54%), Gaps = 10/665 (1%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           ++  GL +++ + + L+  Y   G ++ + Q+F+ +   N + + ++++  S  G  E++
Sbjct: 213 VVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEES 272

Query: 116 LLVYKQMALQ----SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
            L+  +M  +    +  P   T   V+  C+   +   G+ +H   VKL  D    + +A
Sbjct: 273 FLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNA 332

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           L++ Y KC G   N + + +         WN+++      G +  +F++ + M   G + 
Sbjct: 333 LMDMYSKC-GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDV 391

Query: 232 --DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
             D  T++N +        L   + +HC ++  +F  +  V  A ++ Y+K  SL  A+ 
Sbjct: 392 KADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQR 451

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F  +  K    WN +I  + QS  P+ SL+  + M  SG   D FT  + +S+ S +K+
Sbjct: 452 VFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS 511

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +  GK++H  ++RN  +  + V+ S++ +Y  C +L   + +FD+++ K++VSW+++I G
Sbjct: 512 LRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITG 571

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y+ +     AL +F +M L G+++  ++++ +  AC  + +L   +  H Y++K  L   
Sbjct: 572 YLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD 631

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
           + +  ++   YAK G I  + ++F+  K   K   +WN+MI  Y  HG   +  KL+ +M
Sbjct: 632 AFIACSLIDMYAKNGSITQSSKVFNGLK--EKSTASWNAMIMGYGIHGLAKEAIKLFEEM 689

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +++   PD +TFLG+LTAC ++GL+ EG     +MK S+G +P+ +HYA ++++LGRAG 
Sbjct: 690 QRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 749

Query: 590 MDEA-RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
           +D+A R + ++M  + D  +W  LLS+C++H   E+ E  A KL  +EPE   NYVLLSN
Sbjct: 750 LDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSN 809

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +YA  GKW  V K+R  + +  L+K  GCSWIE+ + V  F   ++     + I ++  I
Sbjct: 810 LYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSI 869

Query: 709 LELEI 713
           LE++I
Sbjct: 870 LEMKI 874



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 198/415 (47%), Gaps = 19/415 (4%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
           D   G KIH  V        DDV    ++  Y  C  G  ++   +   F  L+S+    
Sbjct: 99  DIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMC--GSPDDSRFV---FDALRSKNLFQ 153

Query: 201 WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++IS   +N   ++  E F +++       D  T   ++++   +  + +G  VH + 
Sbjct: 154 WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLV 213

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V +   +D+ V  AL+S Y     + DA  LFD M +++ V WN MI  +  +GF +ES 
Sbjct: 214 VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESF 273

Query: 320 ELLMCMVR----SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            LL  M+       F  D+ T +  +   +  + I  GK +H   ++   D ++ ++N+L
Sbjct: 274 LLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNAL 333

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEV 433
           +DMY +C  +  A+ IF     K VVSW++M+ G+     +     +  +M   G  V+ 
Sbjct: 334 MDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKA 393

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D VTI+N +P C +   L  +K LH YS+K        V  A   SYAKCG +  A  +F
Sbjct: 394 DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVF 453

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
               I SK + +WN++I  +A+  D       + QMK S + PD  T   LL+AC
Sbjct: 454 --HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSAC 506



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 9/209 (4%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL+ C   + L+   ++H  +II + L ++L +  +++  Y + G L   Q +F+++  
Sbjct: 501 SLLSACSKLKSLRLGKEVHG-FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++    + G  ++ L V++QM L  +     +   V  +CS L     G + 
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619

Query: 154 HAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           HA  +K  L  D+F  +  +L++ Y K     ++ K     K K   S WN++I     +
Sbjct: 620 HAYALKHLLEDDAF--IACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIH 676

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           G ++++ +LF+ M+  G   D  T + +L
Sbjct: 677 GLAKEAIKLFEEMQRTGHNPDDLTFLGVL 705


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/547 (35%), Positives = 295/547 (53%), Gaps = 25/547 (4%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS--GTLINLLRSTVELKSLELGRIVHCV 258
           W   I +A   G+   +  LF  MR   A   S   +L   L+S   L    L   +H +
Sbjct: 15  WAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHAL 74

Query: 259 AVVSDFCKDLSVNTALLSMYSKL--------------------ASLEDAKMLFDKMSDKD 298
           A+ S    D     ALL++  KL                    A+ E  + +FD+M ++D
Sbjct: 75  AIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERD 134

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN +I    +    +E+L ++  M R GF  D FT    +   +   +I+ G  +H 
Sbjct: 135 AVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHG 194

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             ++NG D  V V +SLIDMY  C  ++ + K+FDS      V W+SM+ GY  +    E
Sbjct: 195 YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEE 254

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL +F  M   GV    VT  +++PA  N+  L   K LH Y ++   N    +++++  
Sbjct: 255 ALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLID 314

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCG +++A  +F+   I S DI++W +MI  YA HG  ++ F L+ +M+  +V+P+ 
Sbjct: 315 MYCKCGNVDIARRVFN--GIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNH 372

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL +LTAC +AGLV+ G   F  M   YG+ PS EH A++ + LGRAG +DEA   + 
Sbjct: 373 ITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFIS 432

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +M  KP + VW  LL AC++H  T LAE  A+K+  +EP++ G++V+LSN+Y+A+G+WN 
Sbjct: 433 EMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNE 492

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIMEGR 717
            A++R  +R +G+KK P CSWIE+   +H F A D+SHP  D I   L +  E  I +G 
Sbjct: 493 AAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGY 552

Query: 718 RESSEEL 724
             + E++
Sbjct: 553 VPNMEDV 559



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 155/349 (44%), Gaps = 27/349 (7%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +   +++ + T++   ++   +++ L + ++M      P   T   V+   +  
Sbjct: 124 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNS 203
            D   G  +H   +K GFD+   VG +L++ Y  C     + K  +   F D  +  WNS
Sbjct: 184 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMK--VFDSFSDCDAVLWNS 241

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +++   QNG  E++  +F+ M   G      T  +L+ +   L  L LG+ +H   + + 
Sbjct: 242 MLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRAR 301

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  ++ ++++L+ MY K  +++ A+ +F+ +   D V W  MI  Y   G   E+  L  
Sbjct: 302 FNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFE 361

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN---------- 373
            M     + +  T +A +++ S           HA ++ NG  Y  S+ N          
Sbjct: 362 RMELGNVKPNHITFLAVLTACS-----------HAGLVDNGWKYFNSMSNQYGFVPSLEH 410

Query: 374 --SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQSLEA 419
             +L D      DL+ A      +K K   S WS++++    H  ++ A
Sbjct: 411 CAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLA 459



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 128/273 (46%), Gaps = 12/273 (4%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C + +    +H  Y I +G   ++ + S+LID YAN   +  S +VF+S +  +++L+ +
Sbjct: 183 CADIKRGMVVHG-YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNS 241

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +L   ++ G  E+ L ++++M    + P   T+  +I +   L     G+++HA +++  
Sbjct: 242 MLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRAR 301

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKS 217
           F+    +  +L++ Y KC         + +R F  ++S     W ++I     +G + ++
Sbjct: 302 FNDNIFISSSLIDMYCKC-----GNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEA 356

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLS 276
           F LF+ M +   + +  T + +L +      ++ G +  + ++    F   L    AL  
Sbjct: 357 FVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALAD 416

Query: 277 MYSKLASLEDAKMLFDKMSDKD-RVVWNIMISA 308
              +   L++A     +M  K    VW+ ++ A
Sbjct: 417 TLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRA 449


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 210/652 (32%), Positives = 328/652 (50%), Gaps = 76/652 (11%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           ++  Y+  G L L+  +F +I  P++  Y T+L  L+          ++ +M      P 
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM------PV 128

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD-------ALVEFYIKCDGGF 183
            D+  + +         IS    H  +V L    FD   +        ++  Y++ +G  
Sbjct: 129 RDSVTYNV--------MISSHANHG-LVSLARHYFDLAPEKDAVSWNGMLAAYVR-NGRV 178

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           E  +G+   + +     WN+L+S  VQ GK  ++ ELF   RM G +  S    N++ S 
Sbjct: 179 EEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFD--RMPGRDVVS---WNIMVSG 233

Query: 244 VELKS--LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
              +   +E  R+     V     +D+   TA++S Y++   LE+A+ +FD M +++ V 
Sbjct: 234 YARRGDMVEARRLFDAAPV-----RDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS 288

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN M++AY Q     E+ EL   M                                    
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMMP----------------------------------C 314

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           RN     V+  N+++  Y +   L  A+ +FD++  K  VSW++M+  Y     S E L+
Sbjct: 315 RN-----VASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF EM   G  V+      +L  C +I ALE    LHG  ++ G      V  A+   Y 
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A   F+E  ++ +D+++WN+MI+ YA+HG   +  +++  M+ +  +PD IT 
Sbjct: 430 KCGNMEDARNAFEE--MEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITL 487

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L AC ++GLVE+G   F  M   +G     EHY  M++LLGRAG + EA +L+KDMP
Sbjct: 488 VGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           F+PD+ +WG LL A ++H   EL    AEK+  +EPENAG YVLLSNIYA++GKW    K
Sbjct: 548 FEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARK 607

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           MR  + +RG+KK PG SWIE+   VH F A D  HP+ + IY  L  L++ +
Sbjct: 608 MRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRM 659



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 124/253 (49%), Gaps = 13/253 (5%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +N+   + ++  YA  G+L  ++ VF+++   +++ +  +L   S+ G  E+TL ++ +M
Sbjct: 315 RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                +     +  V+ +C+ +     G ++H ++++ G+     VG+AL+  Y KC G 
Sbjct: 375 GRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKC-GN 433

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            E+ +      F++++ R    WN++I+   ++G  +++ E+F +MR    + D  TL+ 
Sbjct: 434 MEDARN----AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMS- 295
           +L +      +E G I +  ++  DF         T ++ +  +   L +A  L   M  
Sbjct: 490 VLAACSHSGLVEKG-ISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 548

Query: 296 DKDRVVWNIMISA 308
           + D  +W  ++ A
Sbjct: 549 EPDSTMWGALLGA 561


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 168/512 (32%), Positives = 298/512 (58%), Gaps = 6/512 (1%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N++I    +N  +    E    M + G E D  T+  +L++   ++ +  G+ +H  ++ 
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 262 SDFCK-DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
           +     ++ V+  L+ +YS   S+ D + +FD+   +D V W  +I A+ ++G    ++E
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDM 378
             M M     RAD  T +  +S+ S + ++  G+++H+ + R+  D +  V V N+L+DM
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYI-RHYIDMKADVFVGNALLDM 257

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C+DLN A K+FD +  K VV+W++MI G     +  EAL  F  M+ +GV+ D VT+
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + +L +C N+G LE  K++H Y  +  + +   V  A+   YAKCG I+ A  +F  E +
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVF--ESM 375

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             +D+ ++ +MI   A HG+ +  F+++++M +  + P+ +TFLGLL AC + GLV EG+
Sbjct: 376 KRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGK 435

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F +M + Y   P  EHY  M++LLGRAG + EA E++  M  +PD    G LL AC++
Sbjct: 436 KYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRI 495

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H   ++ E   +KL  ++P+  G Y+L++N+Y++  +W    K+R  ++++ ++KTPGCS
Sbjct: 496 HGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCS 555

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
            IE+  +VHEF   D+SHP++  I   + +++
Sbjct: 556 LIEVDGVVHEFRKGDKSHPRSKVIIANINLIK 587



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 158/592 (26%), Positives = 261/592 (44%), Gaps = 60/592 (10%)

Query: 34  HSFS-LLNLCENPQHLQQIHARYIILHGLH-QNLILSSNLIDS---------YANLGLLS 82
           H FS  LN C++  HL+QIH   I    L   NLI     + S         Y    LL+
Sbjct: 7   HLFSHSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLT 66

Query: 83  LSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            S      ++  N+     I++++S+       +    +M +  + P   T P V+++ +
Sbjct: 67  HSHDAQFCLSLCNA-----IIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALA 121

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
            +     G++IHA+ +K G   F+  V + L+  Y  C    + +K   +   +DL S W
Sbjct: 122 LIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVS-W 180

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC-VAV 260
            +LI    + G   ++ E F  M       D  TL+ +L +   L  L LG+ VH  +  
Sbjct: 181 TTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRH 240

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
             D   D+ V  ALL MY K   L  A  +FD+M  K+ V WN MIS     G  +E+L+
Sbjct: 241 YIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALD 300

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M   G + D  T +  ++S + +  +E GK +HA + RN       V N+L+DMY 
Sbjct: 301 TFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYA 360

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  ++ A ++F+S+K + V S+++MI G   H ++  A ++FSEM   G+E + VT + 
Sbjct: 361 KCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLG 420

Query: 441 ILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC + G + E  KY    S K  L   +     +     + G ++ A E+       
Sbjct: 421 LLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEI------- 473

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
                                        + + ++RPD+     LL AC   G V+ G  
Sbjct: 474 -----------------------------IHKMEIRPDVFACGALLGACRIHGNVDIGES 504

Query: 560 IFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           + +++ E    +P +E  Y  M NL        +A ++ K M  K   +  G
Sbjct: 505 VMQKLTE---LDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPG 553


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 302/545 (55%), Gaps = 34/545 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++I   V++   +K   L+K ++   G   D+ T   L +    L    +G  +    
Sbjct: 121 WNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQV 180

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           +   F KD+ +   ++ M   +     A  +FD+   +D V WN +I+ Y +   P+E++
Sbjct: 181 LKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAM 240

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            +   M+    + D  T I  VS+ + +++++ G+++H  +  +G + ++S+ N+L+DMY
Sbjct: 241 GIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMY 300

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT-----------HDQ------------- 415
            +C DL   + +FD+++ KTVVSW++MI GY             HD              
Sbjct: 301 VKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIG 360

Query: 416 -------SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
                  S EAL LF EM+   ++ D VT+++ L AC  +GAL+   + H Y  K  L+ 
Sbjct: 361 SCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSL 420

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
             ++ TA+   YAKCG +  A ++F+E  +  ++ +TW ++I   A +G+ +     +++
Sbjct: 421 DVALGTALIDMYAKCGNMTKALQVFNE--MPRRNSLTWTAIIGGLALYGNVNDAIFYFSK 478

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M  S + PD ITFLG+LTAC + GLVEEGR  F +MK  +   P  +HY+ MVNLLGRAG
Sbjct: 479 MIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAG 538

Query: 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            ++EA EL+K MP + DA VWG L  AC +H    + E  A KL+ ++P ++G YVLL+N
Sbjct: 539 LLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLAN 598

Query: 649 IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
           +Y  AGKW     +R  + +RG++KTPG S IE+  +++EF   D+SHPQ++ IY    +
Sbjct: 599 MYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYECFNL 658

Query: 709 LELEI 713
           +   I
Sbjct: 659 INKTI 663



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 133/535 (24%), Positives = 248/535 (46%), Gaps = 52/535 (9%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYI----ILHGLHQNLILSSNLIDSYANLG 79
           N T  ++ +    SLL  C++   L+QI A+ I    IL G   + ++S   I    NL 
Sbjct: 45  NTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNL- 103

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVI 138
                 ++ N++ +PN   +  +++   +    +K L++YK+M  ++   P   TY F+ 
Sbjct: 104 --DYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLF 161

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF---- 194
           + C+ L+    G +I  QV+K+GFD    + + ++   +        E G+  + F    
Sbjct: 162 KVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSV-----GESGLAHKVFDEGC 216

Query: 195 -KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +DL S WNSLI+  V+  +  ++  +++ M  E  + D  T+I ++ +  +L+SL+LGR
Sbjct: 217 VRDLVS-WNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGR 275

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK-------------------- 293
            +H     S     +S+  AL+ MY K   LE  K+LFD                     
Sbjct: 276 EIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNG 335

Query: 294 -----------MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
                      M +K+ V WN MI +  Q+    E+LEL   M  S  + D  T +  +S
Sbjct: 336 LLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLS 395

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           + S +  ++ G   H  + ++     V++  +LIDMY +C ++  A ++F+ +  +  ++
Sbjct: 396 ACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLT 455

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYS 461
           W+++I G   +    +A+  FS+M   G+  D +T + +L AC + G +E   KY     
Sbjct: 456 WTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMK 515

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
            +  L+      + +     + G +E A EL     +++ D + W ++  A   H
Sbjct: 516 SRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEA-DAMVWGALFFACGIH 569


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 309/563 (54%), Gaps = 41/563 (7%)

Query: 190 IQRKFKDLKSR----WNSLI---SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           ++R F+ L  R    WN LI   SL+   G + K++    +M+   +     TL+ +L+ 
Sbjct: 88  MERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN--TMMKDFSSNLTRVTLMTMLKL 145

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD------ 296
           +     + LG+ +H   +   F   L V + LL MYSK+  + DAK +F  + D      
Sbjct: 146 SSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMY 205

Query: 297 ------------------------KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
                                   KD V W+ MI    Q+G  KE++E    M   G + 
Sbjct: 206 NTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKM 265

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D +   + + +   +  I  G+Q+HA ++R      + V ++LIDMYC+C+ L+ A+ +F
Sbjct: 266 DQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVF 325

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D +K K VVSW++M+ GY    ++ EA+++F +M+  G++ D  T+   + AC NI +LE
Sbjct: 326 DRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLE 385

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
                HG ++  GL    +V+ ++   Y KCG I+ +  LF+E  ++ +D ++W +M+SA
Sbjct: 386 EGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNE--MNVRDEVSWTAMVSA 443

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA+ G   +  +L+ +M Q  ++PD +T  G+++AC  AGLVE+G+  F+ M   YG  P
Sbjct: 444 YAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVP 503

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           S  HY+ M++L  R+G ++EA   +  MPF+PDA  W  LLSAC+     E+ +  AE L
Sbjct: 504 SNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESL 563

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           I ++P +   Y LLS+IYA+ GKW+ VA++R  ++++ ++K PG SWI+    +H F A 
Sbjct: 564 IELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSAD 623

Query: 693 DQSHPQADAIYTILGILELEIME 715
           D+S P +D IY  L  L  +I++
Sbjct: 624 DESSPYSDQIYAKLEELYQKIID 646



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 153/632 (24%), Positives = 278/632 (43%), Gaps = 91/632 (14%)

Query: 13  SGHVKFLR------FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLI 66
           S HVK +        P  +T  H    H+++L+           I+AR +       NL 
Sbjct: 19  SRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIR--------SSIYARRVFDGIPQPNLF 70

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ- 125
             +NL+ +Y+  G LS  ++ F  +   + + +  +++  S  G     +  Y  M    
Sbjct: 71  SWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDF 130

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
           S      T   +++  S       G++IH QV+KLGF+S+  VG  L++ Y K  G   +
Sbjct: 131 SSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV-GCISD 189

Query: 186 EK------------------------GMIQ------RKFKDLKSRWNSLISLAVQNGKSE 215
            K                        GMI+      R  +     W+++I    QNG  +
Sbjct: 190 AKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEK 249

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ E F+ M++EG + D     ++L +   L ++  GR +H   + ++    + V +AL+
Sbjct: 250 EAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALI 309

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY K   L  AK +FD+M  K+ V W  M+  Y Q+G   E++++ + M RSG   D +
Sbjct: 310 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHY 369

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T   A+S+ + + ++E G Q H   +  G  + ++V NSL+ +Y +C D++ + ++F+ +
Sbjct: 370 TLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEM 429

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             +  VSW++M+  Y    +++EA++LF +M   G++ D VT+  ++ AC   G +E   
Sbjct: 430 NVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVE--- 486

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS----MIS 511
                                             G+ + E  I+   I+  N     MI 
Sbjct: 487 ---------------------------------KGQRYFELMINEYGIVPSNGHYSCMID 513

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            +++ G   +       M     RPD I +  LL+AC N G +E G+   + + E   + 
Sbjct: 514 LFSRSGRIEEAMGFINGMP---FRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHH 570

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           P+   Y  + ++    G  D   +L + M  K
Sbjct: 571 PAG--YTLLSSIYASKGKWDCVAQLRRGMKEK 600



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 201/425 (47%), Gaps = 39/425 (9%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL  YSK   L + +  F+K+ D+D V WN++I  Y  SG    +++    M++  F ++
Sbjct: 75  LLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD-FSSN 133

Query: 334 L--FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
           L   T +  +   S+  ++  GKQ+H  V++ G +  + V + L+DMY +   ++ A+K+
Sbjct: 134 LTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKV 193

Query: 392 F---DSVKT---------------------------KTVVSWSSMIKGYVTHDQSLEALR 421
           F   D   T                           K  VSWS+MIKG   +    EA+ 
Sbjct: 194 FYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIE 253

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F EMK+EG+++D     ++LPAC  +GA+   + +H   ++  L     V +A+   Y 
Sbjct: 254 CFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYC 313

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KC C+  A  +FD  ++  K++++W +M+  Y + G   +  K++  M++S + PD  T 
Sbjct: 314 KCKCLHYAKTVFD--RMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTL 371

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
              ++AC N   +EEG   F     + G         S+V L G+ G +D++  L  +M 
Sbjct: 372 GQAISACANISSLEEGS-QFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMN 430

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            + D   W  ++SA         A    +K++ +  +  G  V L+ + +A  +   V K
Sbjct: 431 VR-DEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDG--VTLTGVISACSRAGLVEK 487

Query: 662 MRTFL 666
            + + 
Sbjct: 488 GQRYF 492



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 149/390 (38%), Gaps = 100/390 (25%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           K +H N++R     +  +HN+++  Y        AR++FD +    + SW++++  Y   
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 414 DQSLEALRLFSEMK----------LEGVEV----------------DF------VTIINI 441
               E  R F ++           +EG  +                DF      VT++ +
Sbjct: 83  GHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTM 142

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF----DEEK 497
           L    + G +   K +HG  +KLG  S   V + +   Y+K GCI  A ++F    D   
Sbjct: 143 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNT 202

Query: 498 I----------------DS--------KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
           +                D+        KD ++W++MI   A++G   +  + + +MK   
Sbjct: 203 VMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEG 262

Query: 534 VRPDLITFLGLLTACVNAGLVEEGR----IIFKEMKESYGYEPSQ----------EHYA- 578
           ++ D   F  +L AC   G + +GR     I +   + + Y  S            HYA 
Sbjct: 263 LKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAK 322

Query: 579 ---------------SMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSACKMHS 620
                          +MV   G+ G   EA ++  DM      PD    G  +SAC   S
Sbjct: 323 TVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANIS 382

Query: 621 ETELAELTAEKLISMEPENAG--NYVLLSN 648
             E       K I+     AG  +Y+ +SN
Sbjct: 383 SLEEGSQFHGKAIT-----AGLIHYITVSN 407



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           +  C+ +GA  HVK +HG  ++   +  + ++  I  +YA       A  +FD   I   
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFD--GIPQP 67

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           ++ +WN+++ AY+K G  S+  + + ++   D     +T+  L+     +GLV      +
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDG----VTWNVLIEGYSLSGLVGAAVKAY 123

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL---VKDMPFKPDARVWGPLL 613
             M + +    ++    +M+ L    GH+   +++   V  + F+    V  PLL
Sbjct: 124 NTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL 178


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/665 (29%), Positives = 362/665 (54%), Gaps = 10/665 (1%)

Query: 56   IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
            ++  GL +++ + + L+  Y   G ++ + Q+F+ +   N + + ++++  S  G  E++
Sbjct: 568  VVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEES 627

Query: 116  LLVYKQMALQ----SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
             L+  +M  +    +  P   T   V+  C+   +   G+ +H   VKL  D    + +A
Sbjct: 628  FLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNA 687

Query: 172  LVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
            L++ Y KC G   N + + +         WN+++      G +  +F++ + M   G + 
Sbjct: 688  LMDMYSKC-GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDV 746

Query: 232  --DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
              D  T++N +        L   + +HC ++  +F  +  V  A ++ Y+K  SL  A+ 
Sbjct: 747  KADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQR 806

Query: 290  LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            +F  +  K    WN +I  + QS  P+ SL+  + M  SG   D FT  + +S+ S +K+
Sbjct: 807  VFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS 866

Query: 350  IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
            +  GK++H  ++RN  +  + V+ S++ +Y  C +L   + +FD+++ K++VSW+++I G
Sbjct: 867  LRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITG 926

Query: 410  YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
            Y+ +     AL +F +M L G+++  ++++ +  AC  + +L   +  H Y++K  L   
Sbjct: 927  YLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDD 986

Query: 470  SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
            + +  ++   YAK G I  + ++F+  K   K   +WN+MI  Y  HG   +  KL+ +M
Sbjct: 987  AFIACSLIDMYAKNGSITQSSKVFNGLK--EKSTASWNAMIMGYGIHGLAKEAIKLFEEM 1044

Query: 530  KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
            +++   PD +TFLG+LTAC ++GL+ EG     +MK S+G +P+ +HYA ++++LGRAG 
Sbjct: 1045 QRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 1104

Query: 590  MDEA-RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648
            +D+A R + ++M  + D  +W  LLS+C++H   E+ E  A KL  +EPE   NYVLLSN
Sbjct: 1105 LDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSN 1164

Query: 649  IYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
            +YA  GKW  V K+R  + +  L+K  GCSWIE+ + V  F   ++     + I ++  I
Sbjct: 1165 LYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSI 1224

Query: 709  LELEI 713
            LE++I
Sbjct: 1225 LEMKI 1229



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 198/415 (47%), Gaps = 19/415 (4%)

Query: 146 DFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
           D   G KIH  V        DDV    ++  Y  C  G  ++   +   F  L+S+    
Sbjct: 454 DIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMC--GSPDDSRFV---FDALRSKNLFQ 508

Query: 201 WNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN++IS   +N   ++  E F +++       D  T   ++++   +  + +G  VH + 
Sbjct: 509 WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLV 568

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           V +   +D+ V  AL+S Y     + DA  LFD M +++ V WN MI  +  +GF +ES 
Sbjct: 569 VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESF 628

Query: 320 ELLMCMVR----SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            LL  M+       F  D+ T +  +   +  + I  GK +H   ++   D ++ ++N+L
Sbjct: 629 LLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNAL 688

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEV 433
           +DMY +C  +  A+ IF     K VVSW++M+ G+     +     +  +M   G  V+ 
Sbjct: 689 MDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKA 748

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           D VTI+N +P C +   L  +K LH YS+K        V  A   SYAKCG +  A  +F
Sbjct: 749 DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVF 808

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
               I SK + +WN++I  +A+  D       + QMK S + PD  T   LL+AC
Sbjct: 809 --HGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSAC 861



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 9/209 (4%)

Query: 37   SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            SLL+ C   + L+   ++H  +II + L ++L +  +++  Y + G L   Q +F+++  
Sbjct: 856  SLLSACSKLKSLRLGKEVHG-FIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 914

Query: 94   PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             + + + T++    + G  ++ L V++QM L  +     +   V  +CS L     G + 
Sbjct: 915  KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 974

Query: 154  HAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
            HA  +K  L  D+F  +  +L++ Y K     ++ K     K K   S WN++I     +
Sbjct: 975  HAYALKHLLEDDAF--IACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIH 1031

Query: 212  GKSEKSFELFKLMRMEGAEFDSGTLINLL 240
            G ++++ +LF+ M+  G   D  T + +L
Sbjct: 1032 GLAKEAIKLFEEMQRTGHNPDDLTFLGVL 1060


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 287/530 (54%), Gaps = 24/530 (4%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS--GTLINLLRSTVELKSLELGRIVHCV 258
           W   I +A   G+   +  LF  MR   A   S   +L   L+S   L    L   +H +
Sbjct: 332 WAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHAL 391

Query: 259 AVVSDFCKDLSVNTALLSMYSKL--------------------ASLEDAKMLFDKMSDKD 298
           A+ S    D     ALL++  KL                    A+ E  + +FD+M ++D
Sbjct: 392 AIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERD 451

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V WN +I    +    +E+L ++  M R GF  D FT    +   +   +I+ G  +H 
Sbjct: 452 AVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHG 511

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             ++NG D  V V +SLIDMY  C  ++ + K+FDS      V W+SM+ GY  +    E
Sbjct: 512 YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEE 571

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL +F  M   GV    VT  +++PA  N+  L   K LH Y ++   N    +++++  
Sbjct: 572 ALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLID 631

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCG +++A  +F+   I S DI++W +MI  YA HG  ++ F L+ +M+  +V+P+ 
Sbjct: 632 MYCKCGNVDIARRVFN--GIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNH 689

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITFL +LTAC +AGLV+ G   F  M   YG+ PS EH A++ + LGRAG +DEA   + 
Sbjct: 690 ITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFIS 749

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +M  KP + VW  LL AC++H  T LAE  A+K+  +EP++ G++V+LSN+Y+A+G+WN 
Sbjct: 750 EMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNE 809

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708
            A++R  +R +G+KK P CSWIE+   +H F A D+SHP  D I   L +
Sbjct: 810 AAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNV 859



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 155/349 (44%), Gaps = 27/349 (7%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +   +++ + T++   ++   +++ L + ++M      P   T   V+   +  
Sbjct: 441 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 500

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNS 203
            D   G  +H   +K GFD+   VG +L++ Y  C     + K  +   F D  +  WNS
Sbjct: 501 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMK--VFDSFSDCDAVLWNS 558

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +++   QNG  E++  +F+ M   G      T  +L+ +   L  L LG+ +H   + + 
Sbjct: 559 MLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRAR 618

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
           F  ++ ++++L+ MY K  +++ A+ +F+ +   D V W  MI  Y   G   E+  L  
Sbjct: 619 FNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFE 678

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN---------- 373
            M     + +  T +A +++ S           HA ++ NG  Y  S+ N          
Sbjct: 679 RMELGNVKPNHITFLAVLTACS-----------HAGLVDNGWKYFNSMSNQYGFVPSLEH 727

Query: 374 --SLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQSLEA 419
             +L D      DL+ A      +K K   S WS++++    H  ++ A
Sbjct: 728 CAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLA 776



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y I +G   ++ + S+LID YAN   +  S +VF+S +  +++L+ ++L   ++ G  E+
Sbjct: 512 YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEE 571

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L ++++M    + P   T+  +I +   L     G+++HA +++  F+    +  +L++
Sbjct: 572 ALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLID 631

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y KC         + +R F  ++S     W ++I     +G + ++F LF+ M +   +
Sbjct: 632 MYCKC-----GNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVK 686

Query: 231 FDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
            +  T + +L +      ++ G +  + ++    F   L    AL     +   L++A  
Sbjct: 687 PNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYN 746

Query: 290 LFDKMSDKD-RVVWNIMISA 308
              +M  K    VW+ ++ A
Sbjct: 747 FISEMKIKPTSSVWSTLLRA 766


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/484 (35%), Positives = 285/484 (58%), Gaps = 25/484 (5%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN---------TAL 274
           ++  G   DS T   L++  +  +++  G ++         C+ L  N           L
Sbjct: 52  LQSHGLWADSATYSELIKCCISNRAVHEGNLI---------CRHLYFNGHRPMMFLVNVL 102

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY K   L DA  LFD+M  ++ + W  MISAY +    +++LELL+ M+R   R ++
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNV 162

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           +T  + + S + M ++   + +H  +++ G +  V V ++LID++ +  +   A  +FD 
Sbjct: 163 YTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           + T   + W+S+I G+  + +S  AL LF  MK  G   +  T+ ++L AC  +  LE  
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
              H + +K   + +  +N A+   Y KCG +E A  +F++ K   +D+ITW++MIS  A
Sbjct: 280 MQAHVHIVKYDQDLI--LNNALVDMYCKCGSLEDALRVFNQMK--ERDVITWSTMISGLA 335

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           ++G   +  KL+ +MK S  +P+ IT +G+L AC +AGL+E+G   F+ MK+ YG +P +
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EHY  M++LLG+AG +D+A +L+ +M  +PDA  W  LL AC++     LAE  A+K+I+
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA 455

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++PE+AG Y LLSNIYA + KW+ V ++RT +RDRG+KK PGCSWIE+ K +H F   D 
Sbjct: 456 LDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515

Query: 695 SHPQ 698
           SHPQ
Sbjct: 516 SHPQ 519



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 191/392 (48%), Gaps = 33/392 (8%)

Query: 31  TATHSFSLLNLC--ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +AT+S  L+  C      H   +  R++  +G    + L + LI+ Y    LL+ + Q+F
Sbjct: 61  SATYS-ELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + +   N + + T++   SK   ++K L +   M   ++ P   TY  V+RSC+ + D  
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
               +H  ++K G +S   V  AL++ + K  G  E+   +           WNS+I   
Sbjct: 179 --RMLHCGIIKEGLESDVFVRSALIDVFAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            QN +S+ + ELFK M+  G   +  TL ++LR+   L  LELG   H   V  D  +DL
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDL 293

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +N AL+ MY K  SLEDA  +F++M ++D + W+ MIS   Q+G+ +E+L+L   M  S
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV------------HNSLI 376
           G + +  T +  + + S           HA +L +G  Y  S+            +  +I
Sbjct: 354 GTKPNYITIVGVLFACS-----------HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMI 402

Query: 377 DMYCECEDLNCARKIFDSVKTKT-VVSWSSMI 407
           D+  +   L+ A K+ + ++ +   V+W +++
Sbjct: 403 DLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 28/297 (9%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           +  RP++  T+S S+L  C     ++ +H   II  GL  ++ + S LID +A LG    
Sbjct: 156 DNVRPNVY-TYS-SVLRSCNGMSDVRMLHCG-IIKEGLESDVFVRSALIDVFAKLGEPED 212

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           +  VF+ + + +++++ +I+   ++    +  L ++K+M        + T   V+R+C+ 
Sbjct: 213 ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 272

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR--- 200
           L     G + H  +VK  +D    + +ALV+ Y KC G  E+      R F  +K R   
Sbjct: 273 LALLELGMQAHVHIVK--YDQDLILNNALVDMYCKC-GSLEDA----LRVFNQMKERDVI 325

Query: 201 -WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG------- 252
            W+++IS   QNG S+++ +LF+ M+  G + +  T++ +L +      LE G       
Sbjct: 326 TWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
           + ++ +  V +          ++ +  K   L+DA  L ++M  + D V W  ++ A
Sbjct: 386 KKLYGIDPVREH------YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/515 (34%), Positives = 288/515 (55%), Gaps = 3/515 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I    +N     + E+++ MR  G   D  T   +L++  EL    L  I+H   +
Sbjct: 122 WNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQII 181

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D+ V   L+++Y+K   +  AK++FD +  +  V W  +IS Y Q+G   E+L 
Sbjct: 182 KYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALR 241

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M  +G + D    ++ + + + + ++E G+ +H  V++ G + + ++  SL   Y 
Sbjct: 242 MFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYA 301

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  A+  FD +KT  V+ W++MI GY  +  + EA+ LF  M    ++ D VT+ +
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS 361

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            + A   +G+LE  +++  Y  K    S   VNT++   YAKCG +E A  +FD      
Sbjct: 362 AVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS--D 419

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD++ W++MI  Y  HG   +   LY  MKQ+ V P+ +TF+GLLTAC ++GLV+EG  +
Sbjct: 420 KDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWEL 479

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  MK+ +   P  EHY+ +V+LLGRAG++ EA   +  +P +P   VWG LLSACK++ 
Sbjct: 480 FHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYR 538

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
              L E  A KL S++P N G+YV LSN+YA++  W+ VA +R  +R++GL K  G S I
Sbjct: 539 CVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVI 598

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           EI   +  F   D+SHP A  I+  L  LE  + E
Sbjct: 599 EINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKE 633



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 238/449 (53%), Gaps = 18/449 (4%)

Query: 16  VKFLRFPANQTRPH-MTATHSF-------SLLNLCENPQHLQQIHARYIILHGLHQNLIL 67
           VK+L F +     H +   H F       SL++   + +HL QIH R +++ GL  N  L
Sbjct: 32  VKYLCFSSALHPEHFVNHDHCFNSDSFYASLIDNSTHKRHLDQIHNR-LVISGLQHNGFL 90

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            + L++  +NLG +  ++++F+    P+  ++  I+++ S+   Y  T+ +Y+ M    +
Sbjct: 91  MTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGV 150

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
           +P   T+P+V+++C+ LLDF     IH Q++K GF S   V + LV  Y KC        
Sbjct: 151 HPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKC-----GHI 205

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           G+ +  F  L  R    W S+IS   QNGK+ ++  +F  MR  G + D   L+++LR+ 
Sbjct: 206 GVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAY 265

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
            ++  LE GR +H   +      + ++  +L + Y+K   +  AK  FD+M   + ++WN
Sbjct: 266 TDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWN 325

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS Y ++G  +E++ L   M+    + D  T  +AV + + + ++E  + M   V ++
Sbjct: 326 AMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKS 385

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                + V+ SLIDMY +C  +  AR++FD    K VV WS+MI GY  H Q  EA+ L+
Sbjct: 386 NYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLY 445

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALE 452
             MK  GV  + VT I +L AC + G ++
Sbjct: 446 HVMKQAGVFPNDVTFIGLLTACNHSGLVK 474



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 197/368 (53%), Gaps = 6/368 (1%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +H   V+S    +  + T L++  S L  +  A+ LFD+    D  +WN +I +Y ++  
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            ++++E+   M  +G   D FT    + + + + +      +H  +++ G    V V N 
Sbjct: 135 YRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNG 194

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           L+ +Y +C  +  A+ +FD +  +T+VSW+S+I GY  + +++EALR+FS+M+  GV+ D
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
           ++ +++IL A  ++  LE  + +HG+ +K+GL    ++  ++   YAKCG + +A   FD
Sbjct: 255 WIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFD 314

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
           + K  + ++I WN+MIS YAK+G   +   L+  M   +++PD +T    + A    G +
Sbjct: 315 QMK--TTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSL 372

Query: 555 EEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           E  + +   + K +YG +       S++++  + G ++ AR  V D     D  +W  ++
Sbjct: 373 ELAQWMDDYVSKSNYGSDIFVN--TSLIDMYAKCGSVEFARR-VFDRNSDKDVVMWSAMI 429

Query: 614 SACKMHSE 621
               +H +
Sbjct: 430 MGYGLHGQ 437


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 174/484 (35%), Positives = 285/484 (58%), Gaps = 25/484 (5%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN---------TAL 274
           ++  G   DS T   L++  +  +++  G ++         C+ L  N           L
Sbjct: 52  LQSHGLWADSATYSELIKCCISNRAVHEGNLI---------CRHLYFNGHRPMMFLVNVL 102

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY K   L DA  LFD+M  ++ + W  MISAY +    +++LELL+ M+R   R ++
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNV 162

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           +T  + + S + M ++   + +H  +++ G +  V V ++LID++ +  +   A  +FD 
Sbjct: 163 YTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           + T   + W+S+I G+  + +S  AL LF  MK  G   +  T+ ++L AC  +  LE  
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
              H + +K   + +  +N A+   Y KCG +E A  +F++ K   +D+ITW++MIS  A
Sbjct: 280 MQAHVHIVKYDQDLI--LNNALVDMYCKCGSLEDALRVFNQMK--ERDVITWSTMISGLA 335

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           ++G   +  KL+ +MK S  +P+ IT +G+L AC +AGL+E+G   F+ MK+ YG +P +
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EHY  M++LLG+AG +D+A +L+ +M  +PDA  W  LL AC++     LAE  A+K+I+
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA 455

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++PE+AG Y LLSNIYA + KW+ V ++RT +RDRG+KK PGCSWIE+ K +H F   D 
Sbjct: 456 LDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515

Query: 695 SHPQ 698
           SHPQ
Sbjct: 516 SHPQ 519



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 191/392 (48%), Gaps = 33/392 (8%)

Query: 31  TATHSFSLLNLC--ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +AT+S  L+  C      H   +  R++  +G    + L + LI+ Y    LL+ + Q+F
Sbjct: 61  SATYS-ELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + +   N + + T++   SK   ++K L +   M   ++ P   TY  V+RSC+ + D  
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
               +H  ++K G +S   V  AL++ + K  G  E+   +           WNS+I   
Sbjct: 179 --RMLHCGIIKEGLESDVFVRSALIDVFAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGF 235

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            QN +S+ + ELFK M+  G   +  TL ++LR+   L  LELG   H   V  D  +DL
Sbjct: 236 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDL 293

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +N AL+ MY K  SLEDA  +F++M ++D + W+ MIS   Q+G+ +E+L+L   M  S
Sbjct: 294 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 353

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV------------HNSLI 376
           G + +  T +  + + S           HA +L +G  Y  S+            +  +I
Sbjct: 354 GTKPNYITIVGVLFACS-----------HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMI 402

Query: 377 DMYCECEDLNCARKIFDSVKTKT-VVSWSSMI 407
           D+  +   L+ A K+ + ++ +   V+W +++
Sbjct: 403 DLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 28/297 (9%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           +  RP++  T+S S+L  C     ++ +H   II  GL  ++ + S LID +A LG    
Sbjct: 156 DNVRPNVY-TYS-SVLRSCNGMSDVRMLHCG-IIKEGLESDVFVRSALIDVFAKLGEPED 212

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143
           +  VF+ + + +++++ +I+   ++    +  L ++K+M        + T   V+R+C+ 
Sbjct: 213 ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 272

Query: 144 LLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR--- 200
           L     G + H  +VK  +D    + +ALV+ Y KC G  E+      R F  +K R   
Sbjct: 273 LALLELGMQAHVHIVK--YDQDLILNNALVDMYCKC-GSLEDA----LRVFNQMKERDVI 325

Query: 201 -WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG------- 252
            W+++IS   QNG S+++ +LF+ M+  G + +  T++ +L +      LE G       
Sbjct: 326 TWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSM 385

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
           + ++ +  V +          ++ +  K   L+DA  L ++M  + D V W  ++ A
Sbjct: 386 KKLYGIDPVREH------YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 218/705 (30%), Positives = 382/705 (54%), Gaps = 21/705 (2%)

Query: 18  FLRFPANQTRPHMTATHSF-SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLID 73
           F    AN+  P    T +F SLL  C + Q L     IH + ++++G   +  +SS+L++
Sbjct: 34  FSSMLANKLLPD---TFTFPSLLKACASLQRLSFGLSIHQQ-VLVNGFSSDFYISSSLVN 89

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
            YA  GLL+ +++VF  +   + + +  ++   S+ G   +   +  +M  Q + P   T
Sbjct: 90  LYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVT 149

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
              ++   S +L+    + +H   V  GFD    V ++++  Y KCD   + +    Q +
Sbjct: 150 ---LLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQME 206

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S WN++IS     G   +  +L   MR +G   D  T    L  +  +  LE+GR
Sbjct: 207 QRDMVS-WNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGR 265

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           ++HC  V + F  D+ + TAL++MY K    E +  + + + +KD V W +MIS   + G
Sbjct: 266 MLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLG 325

Query: 314 FPKESLELLMCMVRSGFRADLFT-AIAAV-SSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
             +++L +   M++SG  +DL + AIA+V +S + + + + G  +H  VLR+G       
Sbjct: 326 RAEKALIVFSEMLQSG--SDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPA 383

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            NSLI MY +C  L+ +  IF+ +  + +VSW+++I GY  +    +AL LF EMK + V
Sbjct: 384 LNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTV 443

Query: 432 E-VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           + VD  T++++L AC + GAL   K +H   ++  +   S V+TA+   Y+KCG +E A 
Sbjct: 444 QQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQ 503

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
             FD   I  KD+++W  +I+ Y  HG      ++Y++   S + P+ + FL +L++C +
Sbjct: 504 RCFDS--ISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSH 561

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
            G+V++G  IF  M   +G EP+ EH A +V+LL RA  +++A +  K+   +P   V G
Sbjct: 562 NGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLG 621

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            +L AC+ + +TE+ ++  E +I ++P +AG+YV L + +AA  +W+ V++    +R  G
Sbjct: 622 IILDACRANGKTEVEDIICEDMIELKPGDAGHYVKLGHSFAAMKRWDDVSESWNQMRSLG 681

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           LKK PG S IE+      F+    SH  +D   ++L +L  E+M+
Sbjct: 682 LKKLPGWSKIEMNGKTTTFFMNHTSH--SDDTVSLLKLLSREMMQ 724



 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 160/584 (27%), Positives = 303/584 (51%), Gaps = 25/584 (4%)

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + + + +LS  G++++ L  +  M    + P   T+P ++++C+ L     G  IH QV+
Sbjct: 14  FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR----WNSLISLAVQN 211
             GF S   +  +LV  Y K         G++   ++ F++++ R    W ++I    + 
Sbjct: 74  VNGFSSDFYISSSLVNLYAKF--------GLLAHARKVFEEMRERDVVHWTAMIGCYSRA 125

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   ++  L   MR +G +    TL+ +L   +E+  L+    +H  AV+  F  D++V 
Sbjct: 126 GIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQ---CLHDFAVIYGFDCDIAVM 182

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            ++L++Y K   + DAK LFD+M  +D V WN MIS Y   G   E L+LL  M   G R
Sbjct: 183 NSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLR 242

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  T  A++S   TM ++E G+ +H  +++ G D  + +  +LI MY +C     + ++
Sbjct: 243 PDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRV 302

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            +++  K VV W+ MI G +   ++ +AL +FSEM   G ++    I +++ +C  +G+ 
Sbjct: 303 LETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSF 362

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
           +    +HGY ++ G    +    ++   YAKCG ++ +  +F  E+++ +D+++WN++IS
Sbjct: 363 DLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIF--ERMNERDLVSWNAIIS 420

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
            YA++ D  +   L+ +MK   V+  D  T + LL AC +AG +  G++I   +  S+  
Sbjct: 421 GYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSF-I 479

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA-ELTA 629
            P      ++V++  + G+++ A+     + +K D   WG L++    H + ++A E+ +
Sbjct: 480 RPCSLVDTALVDMYSKCGYLEAAQRCFDSISWK-DVVSWGILIAGYGFHGKGDIALEIYS 538

Query: 630 EKLIS-MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           E L S MEP +     +LS+         G+    + +RD G++
Sbjct: 539 EFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVE 582


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 207/719 (28%), Positives = 358/719 (49%), Gaps = 36/719 (5%)

Query: 4   LLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQ 63
           L PP   +  G     R    Q +P   A  ++ + N+ E    L+Q+            
Sbjct: 47  LNPPLNYVYPGTATECRDMIWQGKPEQRAPTAYYVPNMPELNSQLKQL------------ 94

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
                         LG +  ++ +FN ++  + + +  ++          + L+++  M 
Sbjct: 95  ------------MKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMW 142

Query: 124 LQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
           + S +   +      +++C+  ++   GE +H   VK G  +   V  ALV+ Y+K    
Sbjct: 143 VDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVG-- 200

Query: 183 FENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
            + E+G     F+++ +R    W ++I   V  G S      F  M      +DS T   
Sbjct: 201 -KTEQGC--SVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAV 257

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
            L+++ E   L  G+ +H   +   F +   V   L +MYSK    +    LF KMS  D
Sbjct: 258 ALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPD 317

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V W  +I  Y Q G  + +L+    M +S    + +T  + +S+ + +   +WG+Q+H 
Sbjct: 318 VVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHG 377

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
           + LR G    +SV NS+I +Y +C  L  A  +FD +  K ++SWS++I  Y     + E
Sbjct: 378 HALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKE 437

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           A    S M  EG + +   + ++L  C ++  LE  K +H Y++ +GL+  + V++A+  
Sbjct: 438 AFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALIS 497

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y++ G ++ A ++FD   I + DI++W +MI+ YA+HG   +   L+  +    + PD 
Sbjct: 498 MYSRSGNLQEASKIFD--SIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDY 555

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +TF+G+LTAC +AGLV+ G   +K M   Y   PS+EHY  +++LL RAG + EA  +V+
Sbjct: 556 VTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVR 615

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MPF  D  VW  LL AC+ H + + A   AE+++ + P +AG ++ L+NIY+A+G+   
Sbjct: 616 NMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREE 675

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGR 717
            A +R  ++ +G+ K PG SWI     ++ F A  QSHP +  I TIL +L   I + R
Sbjct: 676 AAHVRKLMKSKGVIKEPGWSWINSNDQLNTFVAGVQSHPLSKQITTILELLRTSIGDAR 734


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/590 (31%), Positives = 326/590 (55%), Gaps = 7/590 (1%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           Q + P    +  ++R    L D    ++IHAQ++  G      + ++L+  Y+ C    +
Sbjct: 18  QRLSPLAQPHASILRK---LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLAD 74

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            ++      +K++ S W  LIS   +N    ++ ++F+ M M   + ++ T+ ++L +  
Sbjct: 75  AKQIFHHTPYKNVVS-WTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFA 133

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  + + + VHC  V   F  ++ V TAL+ MYSK   +  A+ LF+ MS+++ V WN 
Sbjct: 134 NLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNA 193

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++S Y   GF +E+++L   M R G   D +T ++ + +  ++  ++ G  +H  ++R G
Sbjct: 194 IVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTG 253

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            +    +  +L+D+Y     ++ A ++F  +  K V +W+ M+ G+ +      A++ F+
Sbjct: 254 YENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFN 313

Query: 425 EM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           +M  ++ +++D + ++ IL +C + GAL+  + +H  ++K    +   V +A+   YA C
Sbjct: 314 KMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANC 373

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +E A   F    +  KD++ WN+MI+    +G  +    L+ QMK S + PD  TF+ 
Sbjct: 374 GNLEDAKRFF--YGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVS 431

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +L AC +AG+V EG  IF  M ++    P+ +HYA ++++LGRAG +D A   + +MPF+
Sbjct: 432 VLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQ 491

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PD  V+  LL AC++H   +L    ++K+  MEP +AG YVLLSN+YA AG W GV   R
Sbjct: 492 PDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTR 551

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             LR + +KK PG S IEI + ++ F A ++ HPQ   I  IL  L L+I
Sbjct: 552 ASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKI 601



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 227/435 (52%), Gaps = 17/435 (3%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P  +  P +   H+ S+L   ++ + LQQIHA+ II  GL  N  LS++L+++Y   GLL
Sbjct: 16  PTQRLSP-LAQPHA-SILRKLKDLKPLQQIHAQ-IITSGLTHNTFLSNSLMNAYVYCGLL 72

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           + ++Q+F+     N + +  ++  L+K   + + + V+++M + +  P   T   V+ + 
Sbjct: 73  ADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAF 132

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK--CDGGFENEKGMIQRKFKDLKS 199
           + L      + +H   V+ GF+    V  ALV+ Y K  C        G+ ++ F+ +  
Sbjct: 133 ANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGC-------MGVARQLFESMSE 185

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    WN+++S    +G SE++ +LF LMR +G   D  T+++L+ +++ +  L++G  +
Sbjct: 186 RNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGI 245

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   + + +  D  + TAL+ +Y     ++DA  +F +MS KD   W +M++ +      
Sbjct: 246 HGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHW 305

Query: 316 KESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             +++    M+     + D    +  +SS S    ++ G+++HA  ++      + V ++
Sbjct: 306 DRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSA 365

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           +IDMY  C +L  A++ F  +  K VV W++MI G   +    +A+ LF +MK  G++ D
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPD 425

Query: 435 FVTIINILPACVNIG 449
             T +++L AC + G
Sbjct: 426 ESTFVSVLYACSHAG 440


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 281/476 (59%), Gaps = 3/476 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           + + +  + K+LE  R +H     S F  D  ++ +L+ MY K  S+ DA+ +FD+M  K
Sbjct: 56  SFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK 115

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +I+ Y Q+  P E++ LL  M++  F+ + FT  + + +     +   G+Q+H
Sbjct: 116 DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIH 175

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++ G    V V ++L+DMY  C  ++ A  +FD + +K  VSW+++I G+       
Sbjct: 176 ALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGE 235

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
            AL  F+EM   G E    T  ++  +   +GALE  K++H + +K      + V   + 
Sbjct: 236 SALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLL 295

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G +  A ++FD  ++D+KD++TWNSM++A+A++G   +    + +M++S V  +
Sbjct: 296 DMYAKSGSMIDARKVFD--RVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLN 353

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITFL +LTAC + GLV+EG+  F+ MKE Y  EP  +HY ++V LLGRAG ++ A   +
Sbjct: 354 QITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFI 412

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
             MP +P A VWG LL+AC+MH   ++ +  A+ +  ++P+++G  VLL NIYA+ G+W+
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             A++R  ++  G+KK P CSW+E+   VH F A D +HPQA+ IY + G +  +I
Sbjct: 473 AAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKI 528



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 170/329 (51%), Gaps = 5/329 (1%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQV--VKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           P    Y   I +C+   +     KIHA +   +   D+F D  ++L+  Y KC    +  
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLD--NSLIHMYCKCRSVLDAR 106

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
               Q + KD+ S W SLI+   QN    ++  L   M     + +  T  +LL++    
Sbjct: 107 NVFDQMRRKDMVS-WTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
                GR +H +AV   + +D+ V +ALL MY++   ++ A  +FDK+  K+ V WN +I
Sbjct: 166 ADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S + + G  + +L     M+R+GF A  FT  +  SSI+ +  +E GK +HA+V+++   
Sbjct: 226 SGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQK 285

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
               V N+L+DMY +   +  ARK+FD V  K +V+W+SM+  +  +    EA+  F EM
Sbjct: 286 LTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEM 345

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVK 455
           +  GV ++ +T + IL AC + G ++  K
Sbjct: 346 RKSGVYLNQITFLCILTACSHGGLVKEGK 374



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 150/326 (46%), Gaps = 13/326 (3%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S +  C   ++L+   +IHA ++       +  L ++LI  Y     +  ++ VF+ +  
Sbjct: 56  SFITACAQSKNLEDARKIHA-HLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRR 114

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + +++   ++     + + +   M      P   T+  ++++     D  +G +I
Sbjct: 115 KDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQI 174

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           HA  VK G+     VG AL++ Y +C      +  M    F  L S+    WN+LIS   
Sbjct: 175 HALAVKCGWHEDVYVGSALLDMYARC-----GKMDMATAVFDKLDSKNGVSWNALISGFA 229

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + G  E +   F  M   G E    T  ++  S   L +LE G+ VH   + S       
Sbjct: 230 RKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAF 289

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V   LL MY+K  S+ DA+ +FD++ +KD V WN M++A+ Q G  KE++     M +SG
Sbjct: 290 VGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSG 349

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQ 355
              +  T +  +++ S    ++ GK+
Sbjct: 350 VYLNQITFLCILTACSHGGLVKEGKR 375


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 210/690 (30%), Positives = 356/690 (51%), Gaps = 50/690 (7%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y++  GLH  + ++S+L D Y   G+L  +++VF
Sbjct: 171 NFVVPNVCKACGALQWSRFGRGVHG-YVVKSGLHDCVFVASSLADMYGKCGVLDDARKVF 229

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N + +  ++    + G  E+ + +   M  + + P   T    + + + +    
Sbjct: 230 DEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIE 289

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  +  G +  + +G + + FY K  G  E  + +  R  +     WN LIS  
Sbjct: 290 EGKQSHAIAIVNGLELDNILGTSNLNFYCKV-GLIEYAEMIFDRMIEKDVVTWNLLISGY 348

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  E +  + +LMR+E  ++D  TL  L+ +    ++L+LG+ V C  +   F  D+
Sbjct: 349 VQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASDI 408

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + +  + MY+   S+ DAK +FD +  KD ++WN ++S Y +SG   E+  L   M   
Sbjct: 409 VLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQLE 468

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
               +  T    + S                 LRNG                    +N A
Sbjct: 469 SVPPNAITWNLIILSF----------------LRNG-------------------QVNEA 493

Query: 389 RKIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           ++IF  +++  +    VSW++M+ G V +  S EA+    +M+  G+  +  +I   L A
Sbjct: 494 KEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSA 553

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSS-VNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           C N+ +L   + +HGY ++   +S S  + T++   YAKCG I  A  +F   K+ S D+
Sbjct: 554 CSNLASLHFGRSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVF-RSKLCS-DL 611

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
             +N+MISAYA +G+  +   L  +++ + ++PD ITF  LL+AC +AG V +   IF +
Sbjct: 612 PLYNAMISAYALNGNVKEAIALCRRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIFTD 671

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M   +G +P  EHY  MV++L  AG  D+A  L+++MP+K DAR+   L+++C M  +TE
Sbjct: 672 MVSKHGIKPCLEHYGLMVDILASAGETDKALRLIEEMPYKSDARMIQSLVASCNMKHKTE 731

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L +  +  L+  EPEN+GNYV +SN YA  G W+ V K R  ++ + LKK+PGCSWI I 
Sbjct: 732 LMDFLSRHLLETEPENSGNYVTISNAYAVEGSWDEVVKTREMMKAKRLKKSPGCSWIRIK 791

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEI 713
             VH F A D++H +   I +IL +L  ++
Sbjct: 792 GGVHVFVANDKTHLRNKEIRSILALLAYDM 821



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/529 (28%), Positives = 269/529 (50%), Gaps = 9/529 (1%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           SP+S  Y   + +LSK GE  + L +  +M  + +    + Y  +++ C    D  +G++
Sbjct: 30  SPSSASYFHRVSSLSKSGEIREALSLLTEMDFRKLRIGPEIYGEILQGCVYERDLCTGKQ 89

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           IHA+++K G  +   + +   LV FY KCD    +E    + + +++ S W ++I +  +
Sbjct: 90  IHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYS-WAAIIGVKCR 148

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G  E++   F  M       D+  + N+ ++   L+    GR VH   V S     + V
Sbjct: 149 IGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFV 208

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            ++L  MY K   L+DA+ +FD++ +++ V WN ++  Y Q+G  +E++ LL  M + G 
Sbjct: 209 ASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGI 268

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
                T    +S+ + M  IE GKQ HA  + NG +    +  S ++ YC+   +  A  
Sbjct: 269 EPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEM 328

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           IFD +  K VV+W+ +I GYV      +A+ +   M+LE ++ D VT+  ++ A      
Sbjct: 329 IFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQN 388

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+  K +  Y ++    S   + +     YA CG I  A ++FD   + +KD+I WN+++
Sbjct: 389 LKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFD--SVLAKDLILWNTLL 446

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           S YA+ G   + F+L+ +M+   V P+ IT+  ++ + +  G V E + IF +M+ S G 
Sbjct: 447 SVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSS-GI 505

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
            P+   + +M+N L + G  +EA   ++ M     +P+A      LSAC
Sbjct: 506 FPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSAC 554


>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 704

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 345/641 (53%), Gaps = 7/641 (1%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK-TLLVYKQ 121
           Q+  L++NLI  YA+ G  S +Q++F+ +   N++ Y  ++    +   YE  +  ++  
Sbjct: 41  QSPYLNNNLIAMYAHCGSRSDAQKLFDRMPRKNAISYNALIAAYCRDSSYETLSFKLFSD 100

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           M +Q + P   T+  +++ C  L D+  G  +H QV++ G+ +   V   L+  Y  C G
Sbjct: 101 MGIQRLRPNGATFTSLLQVCCLLEDWFLGSTLHGQVLQFGYVNDICVQTMLLGMYSDC-G 159

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             E+   +     +     WNS+IS  ++N + ++S  LF  M   G  F   T    L 
Sbjct: 160 DLESACKVFGYAVEKDDVFWNSMISGYLKNDRIKESLSLFGEMVRSGTIFTQFTCSMALN 219

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +  +L     GRI+H   +VS+   D ++  ALL MY        A  LF ++     + 
Sbjct: 220 ACSKLGYYSQGRIIHAQVIVSNILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLIS 279

Query: 302 WNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
           WN MIS + ++   ++++ L + ++  S  + D +T  A +S+    +  ++G+ +HA V
Sbjct: 280 WNSMISWFAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQV 339

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           ++ G  + V + N+L+ MY    D+  AR +F  ++ K VV W+ MI G+        A+
Sbjct: 340 IKAGLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAI 399

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
           +LF +M+ EG + D   +   L  C ++  L+  + LH  ++K G  +  SV  ++   Y
Sbjct: 400 KLFCKMRQEGHKSDSFALSGALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMY 459

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           AK G ++ A  +F +  + + D+  WNSMI  Y+ HG   +   L+ ++ +  + PD +T
Sbjct: 460 AKNGNLQAAQLIFSQ--VCNPDLKCWNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVT 517

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           FL LL+AC ++GLVE+G+ ++  MK++ G  P  +HY+ MV+LL RAG +DEA EL+ + 
Sbjct: 518 FLSLLSACNHSGLVEKGKFLWDYMKKN-GITPGPKHYSCMVSLLSRAGLLDEAEELITES 576

Query: 601 PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
               +  ++W  LLS+C       +    A++++ ++PE++  Y+LLSN+YA  G+W+GV
Sbjct: 577 TCSEEHLKLWRTLLSSCVNRRNLTVGARAAKQVLRLDPEDSATYILLSNLYAVTGRWDGV 636

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
           A++R  +R   L+K PG SWIE    +H F + DQS+P  D
Sbjct: 637 AELRKKIRGLMLEKDPGVSWIEAKNDIHVFSSDDQSNPVID 677



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/552 (26%), Positives = 257/552 (46%), Gaps = 24/552 (4%)

Query: 137 VIRSCSCLLDFISGEKIHAQVV----KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           +I+ C+ +       ++HA ++       +     + + L+  Y  C G   + + +  R
Sbjct: 10  LIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHC-GSRSDAQKLFDR 68

Query: 193 KFKDLKSRWNSLISLAVQNGKSEK-SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
             +     +N+LI+   ++   E  SF+LF  M ++    +  T  +LL+    L+   L
Sbjct: 69  MPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDWFL 128

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  +H   +   +  D+ V T LL MYS    LE A  +F    +KD V WN MIS Y +
Sbjct: 129 GSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLK 188

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +   KESL L   MVRSG     FT   A+++ S +     G+ +HA V+ +      ++
Sbjct: 189 NDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSAL 248

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N+L+DMY  C D   A  +F  ++  +++SW+SMI  +  +++  +A+ LF  +KL G+
Sbjct: 249 QNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGLF--VKLLGM 306

Query: 432 EV---DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
                D  T   I+ A     A ++ + LH   +K GL     +  A+   Y +   +E 
Sbjct: 307 STCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEA 366

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A  +F    ++ KD++ W  MI  + + GD     KL+ +M+Q   + D     G L+ C
Sbjct: 367 ARGVF--SLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGALSVC 424

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +  ++++G+++  +  ++ G E       S+V++  + G++ +A +L+      PD + 
Sbjct: 425 ADLAILKQGQMLHTQAVKT-GCEAEISVCGSLVDMYAKNGNL-QAAQLIFSQVCNPDLKC 482

Query: 609 WGPLLSACKMHSETELA-ELTAEKL-ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
           W  ++     H   E A  L AE L   + P+      LLS     A   +G+ +   FL
Sbjct: 483 WNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLS-----ACNHSGLVEKGKFL 537

Query: 667 RDRGLKK--TPG 676
            D   K   TPG
Sbjct: 538 WDYMKKNGITPG 549



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 229/459 (49%), Gaps = 4/459 (0%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           ++  G   ++ + + L+  Y++ G L  + +VF      + + + +++    K    +++
Sbjct: 136 VLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLKNDRIKES 195

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           L ++ +M        + T    + +CS L  +  G  IHAQV+         + +AL++ 
Sbjct: 196 LSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSALQNALLDM 255

Query: 176 YIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDS 233
           Y  C G       +  R +   L S WNS+IS   +N + EK+  LF KL+ M   + D 
Sbjct: 256 YYSC-GDRRTALTLFSRIQIPSLIS-WNSMISWFAKNEEGEKAMGLFVKLLGMSTCKPDE 313

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T   ++ +T E ++ + G+ +H   + +     + +  ALLSMY + + +E A+ +F  
Sbjct: 314 YTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEAARGVFSL 373

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M +KD V+W  MI  + + G  + +++L   M + G ++D F    A+S  + +  ++ G
Sbjct: 374 MEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGALSVCADLAILKQG 433

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +H   ++ G + ++SV  SL+DMY +  +L  A+ IF  V    +  W+SMI GY  H
Sbjct: 434 QMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDLKCWNSMIGGYSHH 493

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
             + EA+ LF+E+   G+  D VT +++L AC + G +E  K+L  Y  K G+       
Sbjct: 494 GMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWDYMKKNGITPGPKHY 553

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
           + +    ++ G ++ A EL  E     + +  W +++S+
Sbjct: 554 SCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLSS 592


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 212/642 (33%), Positives = 336/642 (52%), Gaps = 24/642 (3%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VI 138
           L+ +++VF+ +   + + +  +L   +  G + +   + + M  Q +  A +T+     +
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGL--ASNTFALGSAL 100

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK----GMIQRKF 194
           RS +       G ++ +  +K G  +      AL++ Y KC G   + +    GM +R  
Sbjct: 101 RSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKC-GRVRDARQVFDGMPERN- 158

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
                 WN+LI+   ++G    + ELF  M  EG   D  T  +LL + VE  S  L   
Sbjct: 159 ---TVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLL-TAVEGPSCFLMHQ 214

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSG 313
           +H   V       L+V  A ++ YS+  SL+D++ +FD + D +D + WN M+ AY  +G
Sbjct: 215 LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNG 274

Query: 314 FPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIE-WGKQMHANVLRNGSDYQVSV 371
              E+++  + M++ SG   D+++  + +SS S   + +  G+ +H  V+++  +    V
Sbjct: 275 MDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPV 334

Query: 372 HNSLIDMYCECEDLNC----ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            N+LI MY    + NC    A K F+S+  K  VSW+SM+ GY  H  S +AL+ F  M 
Sbjct: 335 CNALIAMYTRYNE-NCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMC 393

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            E V  D       L +   +  L+  K +HG  +  G  S   V++++   Y+K G I+
Sbjct: 394 SENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIID 453

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A + F+E   D    + WN+MI  YA+HG       L+ +M Q     D ITF+GL+T+
Sbjct: 454 DARKSFEEA--DKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITS 511

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C +AGLV+EG  I   M+  YG     EHYA  V+L GRAG +D+A++L+  MPF+PDA 
Sbjct: 512 CSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAM 571

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VW  LL AC++H   ELA   A  L   EP     YVLLS++Y+  G W+  A ++  ++
Sbjct: 572 VWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMK 631

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            RGL K PG SWIE+   VH F A D+SHP+ D IY +L +L
Sbjct: 632 KRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 232/471 (49%), Gaps = 20/471 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  N+  +S L+D YA  G +  ++QVF+ +   N++ +  ++   ++ G+    L ++
Sbjct: 123 GLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELF 182

Query: 120 KQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
            +M  + + P E T+  ++ +    SC L      ++H ++VK G      V +A +  Y
Sbjct: 183 LEMEREGLAPDEATFASLLTAVEGPSCFL----MHQLHGKIVKYGSALGLTVLNAAITAY 238

Query: 177 IKCDGGFENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDS 233
            +C G  ++ + +       +DL S WN+++     NG  +++ + F ++M+  G   D 
Sbjct: 239 SQC-GSLKDSRRIFDGIGDIRDLIS-WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDM 296

Query: 234 GTLINLLRSTVELKSLE-LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS---LEDAKM 289
            +  +++ S  E    +  GR++H + + S       V  AL++MY++      +EDA  
Sbjct: 297 YSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYK 356

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            F+ +  KD V WN M++ Y Q G   ++L+   CM     R D +   AA+ S S +  
Sbjct: 357 CFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAV 416

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           ++ GKQ+H  V+ +G      V +SLI MY +   ++ ARK F+     + V W++MI G
Sbjct: 417 LQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFG 476

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNS 468
           Y  H Q+     LF+EM      +D +T + ++ +C + G + E  + L+    K G+  
Sbjct: 477 YAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGV-P 535

Query: 469 LSSVNTAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           L   + A  +  Y + G ++ A +L D    +  D + W +++ A   HG+
Sbjct: 536 LRMEHYACGVDLYGRAGQLDKAKKLIDSMPFE-PDAMVWMTLLGACRIHGN 585



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 5/193 (2%)

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCEC--EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           HA++L++G        N L+  Y     + L  AR++FD V  +  VSW++++       
Sbjct: 14  HASLLKSGVAAPTPW-NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASG 72

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              EA RL   M  +G+  +   + + L +            L   ++K GL +     +
Sbjct: 73  AHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   YAKCG +  A ++FD   +  ++ ++WN++I+ Y + GD +   +L+ +M++  +
Sbjct: 133 ALLDVYAKCGRVRDARQVFD--GMPERNTVSWNALIAGYTESGDMASALELFLEMEREGL 190

Query: 535 RPDLITFLGLLTA 547
            PD  TF  LLTA
Sbjct: 191 APDEATFASLLTA 203


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 293/537 (54%), Gaps = 33/537 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +NSL+    ++G+   +   ++ +R  G  FD  +   +L++  ++ +L  G  +H  A 
Sbjct: 82  FNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFAF 141

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D  V T L+ MY+    +  A+ +FD+MS +D V WN MI  Y + G   E+ +
Sbjct: 142 KIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFK 201

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M  S    D       VS+     N+ + + ++  ++ N       +  +L+ MY 
Sbjct: 202 LFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYA 261

Query: 381 E--CED-----------------------------LNCARKIFDSVKTKTVVSWSSMIKG 409
              C D                             L+ AR IFD  + K +V W++MI  
Sbjct: 262 GAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISA 321

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           Y   D   EALR+F EM   G++ D VT+++++ ACVN+G L+  K++H Y+   GL S+
Sbjct: 322 YAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESV 381

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             ++ A+   YAKCG ++ A ++F  EK+ ++++++W+SMI+A+A HG+ S    L+ QM
Sbjct: 382 LPIDNALINMYAKCGGLDAARDVF--EKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQM 439

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           KQ +V P+ +TF+G+L  C ++GLVEEG+ IF  M + Y   P  EHY  MV+L GRA  
Sbjct: 440 KQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANL 499

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
           + EA E+++ MP  P+  +WG L+SAC++H E EL EL A++++ +EP++ G  VL+SNI
Sbjct: 500 LREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNI 559

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           YA   +W+ V  +R  +  + + K  G S I++    HEF   D+ H Q++ IYT L
Sbjct: 560 YAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKL 616



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 256/514 (49%), Gaps = 38/514 (7%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSL 97
           L+ C++  H++Q+HA +I+   ++  L      +   ++   LS +  +F+SI+  P S+
Sbjct: 22  LSFCKSLNHIKQLHA-HILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESI 80

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           ++ ++L++LS+ GE   T+L Y+++          ++P ++++ S +     G ++H   
Sbjct: 81  VFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFA 140

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
            K+   S   V   L++ Y  C G     + +     +     WN++I    + G  +++
Sbjct: 141 FKIATLSDPFVETGLMDMYAAC-GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEA 199

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--------------------- 256
           F+LF+ M+      D   L N++ +     ++   R ++                     
Sbjct: 200 FKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTM 259

Query: 257 -----CVAVVSDFCKDLS-----VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
                C+ +  +F + +S     V+TA++S YSK   L+DA+++FD+   KD V W  MI
Sbjct: 260 YAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMI 319

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           SAY +S  P+E+L +   M  SG + D+ T ++ +S+   +  ++  K +H     NG +
Sbjct: 320 SAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLE 379

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             + + N+LI+MY +C  L+ AR +F+ + T+ VVSWSSMI  +  H ++ ++L LF++M
Sbjct: 380 SVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQM 439

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN--TAIFISYAKCG 484
           K E VE + VT + +L  C + G +E  K +   SM    N    +     +   + +  
Sbjct: 440 KQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA-SMTDEYNITPKIEHYGCMVDLFGRAN 498

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            +  A E+ +   + + +++ W S++SA   HG+
Sbjct: 499 LLREALEVIESMPM-APNVVIWGSLMSACRVHGE 531



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 178/363 (49%), Gaps = 32/363 (8%)

Query: 290 LFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           LF  +S   + +V+N ++    +SG P+ ++     +   G R D  +    + ++S + 
Sbjct: 69  LFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVS 128

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +  G ++H    +  +     V   L+DMY  C  +N AR +FD +  + VV+W++MI+
Sbjct: 129 ALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIE 188

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
            Y       EA +LF EMK   V  D + + NI+ AC   G + + + ++ + ++  +  
Sbjct: 189 RYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRM 248

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDE-----------------------------EKID 499
            + + TA+   YA  GC++MA E F +                             ++ +
Sbjct: 249 DTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTE 308

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            KD++ W +MISAYA+     +  +++ +M  S ++PD++T L +++ACVN G +++ + 
Sbjct: 309 MKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKW 368

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           + +    + G E       +++N+  + G +D AR++ + MP + +   W  +++A  MH
Sbjct: 369 VHRYTHLN-GLESVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINAFAMH 426

Query: 620 SET 622
            E 
Sbjct: 427 GEA 429



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 131/272 (48%), Gaps = 8/272 (2%)

Query: 337 AIAAVSSI----STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           A++A ++I    S  K++   KQ+HA++LR   +++++     +       +L+ A  +F
Sbjct: 11  AVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLF 70

Query: 393 DSVKT-KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
            S+      + ++S+++      +    +  +  ++  G   D ++   IL A   + AL
Sbjct: 71  SSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSAL 130

Query: 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511
                LHG++ K+   S   V T +   YA CG I  A  +FDE  +  +D++TWN+MI 
Sbjct: 131 FEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDE--MSQRDVVTWNTMIE 188

Query: 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571
            Y + G   + FKL+ +MK S+V PD +    +++AC   G +   R I+  + E+    
Sbjct: 189 RYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEN-DVR 247

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
                  ++V +   AG MD A E  + M  +
Sbjct: 248 MDTHLLTALVTMYAGAGCMDMAMEFFRKMSVR 279



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 36  FSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
            S+++ C N   L +   +H RY  L+GL   L + + LI+ YA  G L  ++ VF  + 
Sbjct: 351 LSVISACVNLGTLDKAKWVH-RYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMP 409

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           + N + + +++   +  GE   +L ++ QM  +++ P E T+  V+  CS       G+K
Sbjct: 410 TRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKK 469

Query: 153 IHAQV 157
           I A +
Sbjct: 470 IFASM 474


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 323/559 (57%), Gaps = 14/559 (2%)

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           +H  V+K GF S+  +G  L++ YIKC    E  K      F +L SR    WNS+IS  
Sbjct: 23  VHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARK-----LFDELPSRHIVTWNSMISSH 76

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKD 267
           + +GKS+++ E +  M MEG   D+ T   + ++  +L  +  G+  H +AVV      D
Sbjct: 77  ISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLD 136

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
             V +AL+ MY+K   + DA ++F ++ +KD V++  +I  Y Q G   E+L++   MV 
Sbjct: 137 GFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVN 196

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G + + +T    + +   + ++  G+ +H  V+++G +  V+   SL+ MY  C  +  
Sbjct: 197 RGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIED 256

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           + K+F+ +     V+W+S + G V + +   A+ +F EM    +  +  T+ +IL AC +
Sbjct: 257 SIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSS 316

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           +  LE  + +H  +MKLGL+       A+   Y KCG ++ A  +FD   +   D++  N
Sbjct: 317 LAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFD--VLTELDVVAIN 374

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           SMI AYA++G   +  +L+ ++K   + P+ +TF+ +L AC NAGLVEEG  IF  ++ +
Sbjct: 375 SMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNN 434

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAEL 627
           +  E + +H+  M++LLGR+  ++EA  L++++   PD  +W  LL++CK+H E E+AE 
Sbjct: 435 HNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEK 493

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
              K++ + P + G ++LL+N+YA+AGKWN V +M++ +RD  LKK+P  SW+++ + VH
Sbjct: 494 VMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVH 553

Query: 688 EFWAADQSHPQADAIYTIL 706
            F A D SHP++  I+ +L
Sbjct: 554 TFMAGDLSHPRSLEIFEML 572



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 195/396 (49%), Gaps = 7/396 (1%)

Query: 33  THSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
           + +FS L L    +H Q+ H   ++L     +  ++S L+D YA    +  +  VF  + 
Sbjct: 108 SKAFSQLGLI---RHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVL 164

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             + +L+  ++   ++ G   + L +++ M  + + P E T   ++ +C  L D ++G+ 
Sbjct: 165 EKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQL 224

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           IH  VVK G +S      +L+  Y +C+   ++ K   Q  + + +  W S +   VQNG
Sbjct: 225 IHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYAN-QVTWTSFVVGLVQNG 283

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           + E +  +F+ M       +  TL ++L++   L  LE+G  +H + +      +     
Sbjct: 284 REEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGA 343

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+++Y K  +++ A+ +FD +++ D V  N MI AY Q+GF  E+LEL   +   G   
Sbjct: 344 ALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVP 403

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN--SLIDMYCECEDLNCARK 390
           +  T I+ + + +    +E G Q+ A++ RN  + ++++ +   +ID+      L  A  
Sbjct: 404 NGVTFISILLACNNAGLVEEGCQIFASI-RNNHNIELTIDHFTCMIDLLGRSRRLEEAAM 462

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
           + + V+   VV W +++     H +   A ++ S++
Sbjct: 463 LIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKI 498


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/524 (34%), Positives = 287/524 (54%), Gaps = 2/524 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N++I   V   +   +  L+  M       DS T   +L++   L    LG ++H +  
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVF 131

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            + F  D+ V T ++  YSK   L DA  +FD M  K+ V W  MI    + G  +E+++
Sbjct: 132 KTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVD 191

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   ++ SG R D F  +  + + + + ++E G+ +   +   G    V V  SL+DMY 
Sbjct: 192 LFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYT 251

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  AR +FD +  K +V WS+MI+GY ++    EA+ LF EM+   V  D   ++ 
Sbjct: 252 KCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVG 311

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            L +C ++GALE   +  G        S   + T++   YAKCG +E A  ++   K   
Sbjct: 312 ALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMK--E 369

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD + +N++IS  A +G     F ++ QM +  + P+  TF+GLL  C +AGLV++GR  
Sbjct: 370 KDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHY 429

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M   +   P+ EHY  MV+LL RAG +DEA  L+K MP K +  VWG LL  C++H 
Sbjct: 430 FNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHR 489

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           ET+LAE   ++LI +EP N+G+YVLLSNIY+A+ +W+   K+R+ + ++G++K PG SW+
Sbjct: 490 ETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWV 549

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
           E+  +VHEF   D SHP +  IY  L  L  ++ E     + E 
Sbjct: 550 EVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEF 593



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 225/479 (46%), Gaps = 16/479 (3%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI-TSPNSLLYGTILK 104
           +H +  H R + L+  H N +LS  L  +            VF+   T+ N+ LY T+++
Sbjct: 18  KHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIR 77

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            +     +   + +Y  M   ++ P   T+ FV+++C+ L  F  G  IH+ V K GFD 
Sbjct: 78  GMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDC 137

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFEL 220
              V   +V FY KC  GF  +   +   F D+  +    W  +I   ++ GK  ++ +L
Sbjct: 138 DVFVKTNVVCFYSKC--GFLRDAWKV---FDDMVVKNVVSWTGMICGCIEFGKFREAVDL 192

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F+ +   G   D   ++ +LR+   L  LE GR +          +++ V T+L+ MY+K
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTK 252

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
             S+E+A+ +FD M +KD V W+ MI  Y  +G P+E++EL   M +   R D +  + A
Sbjct: 253 CGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDY--QVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           +SS +++  +E G    A  L N  ++     +  SLID Y +C  +  A  ++  +K K
Sbjct: 313 LSSCASLGALELGNW--AKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEK 370

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YL 457
             V ++++I G   + Q   A  +F +M   G+  +  T + +L  C + G ++  + Y 
Sbjct: 371 DRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYF 430

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +  S    +         +    A+ G ++ A  L     + + ++I W S++     H
Sbjct: 431 NSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKA-NVIVWGSLLGGCRLH 488



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 182/383 (47%), Gaps = 8/383 (2%)

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML-FDKM-SDKDRVVWN 303
           LK L+  ++ HC  +  +   D  + + +L      ++     +L F K  ++ +  ++N
Sbjct: 14  LKCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYN 73

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI           ++ L   M ++    D FT    + + + +     G  +H+ V + 
Sbjct: 74  TMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKT 133

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G D  V V  +++  Y +C  L  A K+FD +  K VVSW+ MI G +   +  EA+ LF
Sbjct: 134 GFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLF 193

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
             +   G+  D   I+ +L AC  +G LE  +++     + GL+    V T++   Y KC
Sbjct: 194 RGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKC 253

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +E A  +FD   +  KDI+ W++MI  YA +G   +  +L+ +M++ +VRPD    +G
Sbjct: 254 GSMEEARFVFD--GMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVG 311

Query: 544 LLTACVNAGLVEEGRIIFKEMK-ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            L++C + G +E G      M  E +   P      S+++   + G M+EA  + K M  
Sbjct: 312 ALSSCASLGALELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEEALGVYKMMKE 369

Query: 603 KPDARVWGPLLSACKMHSETELA 625
           K D  V+  ++S   M+ +   A
Sbjct: 370 K-DRVVFNAVISGLAMYGQVGAA 391


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/500 (35%), Positives = 278/500 (55%), Gaps = 16/500 (3%)

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           ++ M   G   D  T  ++LR+  E + L LGR VH  A  +    +L    AL+SMY+K
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL--------------LMCMV 326
              L  A+ +FD M  +D V WN MIS+Y   G   E++EL              +  MV
Sbjct: 198 CGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREMV 257

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           R G   D  T +  +++ S +  +  GK++H   +R   D   SV N+LI MY  C+D+ 
Sbjct: 258 RGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDME 317

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
           CAR +F  ++   VV+W++M+  +   D + EA  +F EM   GV+ ++VT++  L  C 
Sbjct: 318 CARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCA 377

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +  L+H + LHG+ +K G      +  ++   Y+K G + +A  +FD   +D  D+I++
Sbjct: 378 RVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFD--TMDDCDMISY 435

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            SMI+ Y   G  +   +L+ QM  S ++PD I  + +L+AC ++GLV EG  +F +M  
Sbjct: 436 TSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVI 495

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
           SYG +P  EHY+ M++L  RAG +++A E++   PF P + +W  L+ AC      E+ E
Sbjct: 496 SYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGE 555

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
             A KL+ M  ENAG+YVL++N+YAAAG W+ +A +R  +RD G+ K PG +W ++G   
Sbjct: 556 RAARKLLEMRTENAGHYVLIANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGF 615

Query: 687 HEFWAADQSHPQADAIYTIL 706
             F   D+S+P A  IY +L
Sbjct: 616 TPFLVGDRSNPLAPEIYVVL 635



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 209/420 (49%), Gaps = 27/420 (6%)

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           Y++M    + P   TYP V+R+C+   + + G  +H      G D      +AL+  Y K
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 179 CDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME-------- 227
           C       K   GM+QR   D+ S WNS+IS     G+  ++ ELF+ MR E        
Sbjct: 198 CGDLASARKVFDGMVQR---DVVS-WNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLI 253

Query: 228 ------GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL--SVNTALLSMYS 279
                 GAE D  TL+  L +   +  L LG+ +H +AV    C D   SV+ AL++MY+
Sbjct: 254 REMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAV--RMCCDQVESVSNALITMYA 311

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           +   +E A+MLF  +     V WN M+S++  S   +E+  +   M+  G + +  T + 
Sbjct: 312 RCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVT 371

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            ++  + + N++ G+++H +++++G      + NSLIDMY +   L+ A+ +FD++    
Sbjct: 372 YLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCD 431

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLH 458
           ++S++SMI GY    +   ALRLF +M   G++ D + ++ +L AC + G  LE  +  +
Sbjct: 432 MISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFN 491

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              +  G+       + +   YA+ G +E A E+ D         + W +++ A    G+
Sbjct: 492 KMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTM-WAALVGACHDRGN 550



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           ++T     +L     N QH Q++H  +I+ HG     +L ++LID Y+  G LS++Q VF
Sbjct: 366 YVTVVTYLALCARVANLQHGQELHG-HIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVF 424

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           +++   + + Y +++      G+    L +++QM    + P       V+ +CS     +
Sbjct: 425 DTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVL 484

Query: 149 SGEKI-HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
            GE++ +  V+  G     +    +++ Y +     + E+ +    F    + W +L+  
Sbjct: 485 EGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGA 544

Query: 208 AVQNGK---SEKSFELFKLMRMEGA 229
               G     E++      MR E A
Sbjct: 545 CHDRGNIEIGERAARKLLEMRTENA 569



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/253 (18%), Positives = 108/253 (42%), Gaps = 11/253 (4%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           +S+ LI  YA    +  ++ +F  +  P  + + T+L + +     E+   ++++M  + 
Sbjct: 302 VSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRG 361

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           + P   T    +  C+ + +   G+++H  +VK GF  +  + ++L++ Y K        
Sbjct: 362 VKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSK-----SGR 416

Query: 187 KGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
             + Q  F  +       + S+I+     GK   +  LF+ M   G + D   ++ +L +
Sbjct: 417 LSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSA 476

Query: 243 TVELKSLELGRIVHCVAVVSDFCK-DLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRV 300
                 +  G  +    V+S   K  +   + ++ +Y++   LE A+ + D         
Sbjct: 477 CSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTST 536

Query: 301 VWNIMISAYYQSG 313
           +W  ++ A +  G
Sbjct: 537 MWAALVGACHDRG 549


>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 213/702 (30%), Positives = 361/702 (51%), Gaps = 22/702 (3%)

Query: 34  HSFSLLNLCENPQHLQ---QIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVF 88
           H+ SLL  C     L+   Q+HA  +        Q+  + +N++  YA  G L+ S  VF
Sbjct: 12  HALSLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVF 71

Query: 89  NSITSPNSLLYGTILKNLSKFGEYE--KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD 146
           + +     + Y  +L   S+         L +Y QM    + P+  T+  ++++ S L  
Sbjct: 72  DKMPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEH 131

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WN 202
           +  G  +HA+  KLG +    +  +L+  Y  C      +    +  F D+  R    WN
Sbjct: 132 WWFGSSLHAKGFKLGLNDIC-LQTSLLNMYSNC-----GDLSSAELVFWDMVDRDHVAWN 185

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           SLI   ++N K E+   LF  M   G      T   +L S   LK    GR++H   +V 
Sbjct: 186 SLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVR 245

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
           +   DL +  AL+ MY    +++ A  +F +M + D V WN MI+ Y ++   ++++ L 
Sbjct: 246 NVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLF 305

Query: 323 MCMVRSGF-RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
           + +    F + D +T    +S+     +  +GK +HA V++ G +  V V ++L+ MY +
Sbjct: 306 VQLQEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFK 365

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
             + + A ++F S+  K VV W+ MI GY      + A+R F +M  EG EVD   +  +
Sbjct: 366 NHESDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGV 425

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           + AC N+  L   + +H Y++KLG +   SV+ ++   YAK G +E A  +F +  +   
Sbjct: 426 VNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQ--VSEP 483

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+  WNSM+  Y+ HG   +  +++ ++ +  + PD +TFL LL+AC ++ LVE+G+ ++
Sbjct: 484 DLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLW 543

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLLSACKMHS 620
             M  S G  P  +HY+ MV L  RA  ++EA E++   P+  D   +W  LLSAC ++ 
Sbjct: 544 NYMN-SIGLIPGLKHYSCMVTLFSRAALLEEAEEIINKSPYIEDNLELWRTLLSACVINK 602

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             ++    AE+++ ++ E+    VLLSN+YAAA KW+ VA++R  +R   L K PG SWI
Sbjct: 603 NFKVGIHAAEEVLRLKAEDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLDKYPGLSWI 662

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSE 722
           E    +H F + DQSHP+AD ++  L  L+  ++    +  E
Sbjct: 663 EAKNDIHVFSSGDQSHPKADEVHAELHRLKRNMIRTENDDKE 704


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/474 (36%), Positives = 269/474 (56%), Gaps = 38/474 (8%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV----- 326
           T ++ + +     E A +LF  ++D +  ++N MI AY  +     ++ +   M+     
Sbjct: 50  TKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHG 109

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            +    D FT    V S + +   + GKQ+H +V + G      V NSL++MY +C+ L+
Sbjct: 110 ENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLD 169

Query: 387 -------------------------------CARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
                                           AR IF+ ++ KT+ SW++++ GY     
Sbjct: 170 DAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGC 229

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
             +AL  F  M++ G+E D ++++++LP C  +GALE  K++H Y+ K G      V  A
Sbjct: 230 YADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNA 289

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKCG I+    LFD+ K   +D+I+W++MI   A HG   +  +L+ +M+++ + 
Sbjct: 290 LIEMYAKCGSIDQGRRLFDQMK--ERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIE 347

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P +ITF+GLLTAC +AGL+ EG   F+ MK  Y  EP  EHY  +VNLLG +G +D+A E
Sbjct: 348 PSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALE 407

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           LVK MP KPD+ +WG LLS+C+ H   ++A +  E L+ +EP + GNYVLLSN+YA  GK
Sbjct: 408 LVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGK 467

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           W+GV++MR  +R + +KKTPGCS IE+  +V EF + D S P + AI  +L +L
Sbjct: 468 WDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLL 521



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 177/370 (47%), Gaps = 57/370 (15%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           +L  C N   L++IHA +I+   L Q+  L + ++D   + G    +  +F  +  PN+ 
Sbjct: 20  ILKDCPNIVELKKIHA-HIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAF 78

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQM-----ALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           LY  +++       Y   + VYKQM         ++P + T+PFV++SC+ L+ +  G++
Sbjct: 79  LYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQ 138

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           +H  V K G  S   V ++LVE Y+KCD   +       R F+++  R    WN+LIS  
Sbjct: 139 VHGHVFKFGQKSNTVVENSLVEMYVKCDSLDD-----AHRVFEEMTERDAVSWNTLISGH 193

Query: 209 VQNGKSEK-------------------------------SFELFKLMRMEGAEFDSGTLI 237
           V+ G+  +                               + E F+ M+M G E D  +L+
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           ++L    +L +LELG+ +H  A  + F +++ V  AL+ MY+K  S++  + LFD+M ++
Sbjct: 254 SVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER 313

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D + W+ MI      G  +E++EL   M ++     + T +  +++ +           H
Sbjct: 314 DVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA-----------H 362

Query: 358 ANVLRNGSDY 367
           A +L  G  Y
Sbjct: 363 AGLLNEGLRY 372



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 199/432 (46%), Gaps = 56/432 (12%)

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE-KGM 189
           ED +  +++ C  +++    +KIHA +VK        +   +V+    C+   E E   +
Sbjct: 14  EDMFVPILKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDV---CNHYGETEYANL 67

Query: 190 IQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLM----RMEGAEF-DSGTLINLLRST 243
           + +   D  +  +N++I     N     +  ++K M      E   F D  T   +++S 
Sbjct: 68  LFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSC 127

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             L   +LG+ VH          +  V  +L+ MY K  SL+DA  +F++M+++D V WN
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 187

Query: 304 IMISAYYQ--------------------------SGFPK-----ESLELLMCMVRSGFRA 332
            +IS + +                          SG+ +     ++LE    M   G   
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D  + ++ +   + +  +E GK +H    + G    + V N+LI+MY +C  ++  R++F
Sbjct: 248 DEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF 307

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL- 451
           D +K + V+SWS+MI G   H ++ EA+ LF EM+   +E   +T + +L AC + G L 
Sbjct: 308 DQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLN 367

Query: 452 EHVKYLHG----YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITW 506
           E ++Y       Y+++ G+     +   + +S    G ++ A EL   +K+  K D   W
Sbjct: 368 EGLRYFESMKRDYNIEPGVEHYGCLVNLLGLS----GRLDQALELV--KKMPRKPDSPIW 421

Query: 507 NSMISAYAKHGD 518
            S++S+   HG+
Sbjct: 422 GSLLSSCRSHGN 433



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 161/384 (41%), Gaps = 53/384 (13%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLR---NGSDYQVSVHNSLIDMYCECEDLNCAR 389
           D+F  I     +    NI   K++HA++++   + S + V+    + + Y E E  N   
Sbjct: 15  DMFVPI-----LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANL-- 67

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-----KLEGVEVDFVTIINILPA 444
            +F  V       +++MI+ Y  +   + A+ ++ +M         +  D  T   ++ +
Sbjct: 68  -LFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKS 126

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE--------- 495
           C  +   +  K +HG+  K G  S + V  ++   Y KC  ++ A  +F+E         
Sbjct: 127 CAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSW 186

Query: 496 --------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
                               E++  K I +W +++S YA+ G ++   + + +M+   + 
Sbjct: 187 NTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIE 246

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD I+ + +L  C   G +E G+ I     ++ G+  +     +++ +  + G +D+ R 
Sbjct: 247 PDEISLVSVLPDCAQLGALELGKWIHIYADKA-GFLRNICVCNALIEMYAKCGSIDQGRR 305

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSET-ELAELTAE-KLISMEPENAGNYVLLSNIYAAA 653
           L   M  + D   W  ++     H    E  EL  E +   +EP +   +V L    A A
Sbjct: 306 LFDQMKER-DVISWSTMIVGLANHGRAREAIELFQEMQKAKIEP-SIITFVGLLTACAHA 363

Query: 654 GKWN-GVAKMRTFLRDRGLKKTPG 676
           G  N G+    +  RD  ++  PG
Sbjct: 364 GLLNEGLRYFESMKRDYNIE--PG 385



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 5/248 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + LI  +  LG +  ++ +F  +       +  I+   ++ G Y   L  +++M +  + 
Sbjct: 187 NTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIE 246

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P E +   V+  C+ L     G+ IH    K GF     V +AL+E Y KC    +  + 
Sbjct: 247 PDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRL 306

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
             Q K +D+ S W+++I     +G++ ++ ELF+ M+    E    T + LL +      
Sbjct: 307 FDQMKERDVIS-WSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGL 365

Query: 249 LELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIM 305
           L  G + +  ++  D+  +  V     L+++      L+ A  L  KM  K D  +W  +
Sbjct: 366 LNEG-LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSL 424

Query: 306 ISAYYQSG 313
           +S+    G
Sbjct: 425 LSSCRSHG 432


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 302/577 (52%), Gaps = 74/577 (12%)

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRI--VHCV 258
           N++IS   +   +  +  +F+ +   G+   D  +   LL +   L ++ +     +HC 
Sbjct: 125 NAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCS 184

Query: 259 AVVSDFCKDLSVNTALLSMYSKLASLE---DAKMLFDKMSDKDR---------------- 299
            + S     LSV  AL+++Y K  S E   DA+ + D+M +KD                 
Sbjct: 185 VLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDV 244

Query: 300 ---------------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
                          VVWN MIS Y  SG   E+ EL   MV      D FT  + +S+ 
Sbjct: 245 GAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSAC 304

Query: 345 STMKNIEWGKQMHANVLRNGSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + +     GK +H  ++R   ++     + V+N+L+  Y +C ++  AR+IFD++  K V
Sbjct: 305 ANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDV 364

Query: 401 VSWSSMIKGYVTH---DQSLE----------------------------ALRLFSEMKLE 429
           VSW++++ GYV     D+++E                            AL+LF++M+ E
Sbjct: 365 VSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSE 424

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            V+    T    + AC  +GAL+H K LHG+ ++LG    +S   A+   YA+CG ++ A
Sbjct: 425 NVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEA 484

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             +F    + + D ++WN+MISA  +HG   +  +L+ +M    + PD I+FL +LTAC 
Sbjct: 485 HLMF--LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACN 542

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
           ++GLV+EG   F+ MK  +G  P ++HY  +++LLGRAG + EAR+L+K MPF+P   +W
Sbjct: 543 HSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIW 602

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
             +LS C+   + EL    A++L  M P++ G Y+LLSN Y+AAG W   A++R  +RDR
Sbjct: 603 EAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDR 662

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           G+KK PGCSWIE G  VH F   D  HP+A  +Y  L
Sbjct: 663 GVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFL 699



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 201/439 (45%), Gaps = 80/439 (18%)

Query: 259 AVVSDFCKDLSV--NTALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNIMISAYYQSGF 314
           A  + FC D      T+L++ Y+    L  A   FD +  + +D V+ N +ISAY ++  
Sbjct: 77  AAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASH 136

Query: 315 PKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNI--EWGKQMHANVLRNGSDYQVSV 371
              ++ +   ++ SG  R D ++  A +S+   + NI      Q+H +VL++G+   +SV
Sbjct: 137 AAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSV 196

Query: 372 HNSLIDMYCECE----------------------------------DLNCARKIFDSVKT 397
            N+L+ +Y +CE                                  D+  AR +F+ V  
Sbjct: 197 CNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDG 256

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K  V W++MI GYV    ++EA  LF  M LE V +D  T  ++L AC N+G   H K +
Sbjct: 257 KFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSV 316

Query: 458 HGYSMKLGLNSLS----SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
           HG  ++L  N +      VN A+   Y+KCG I +A  +FD   +  KD+++WN+++S Y
Sbjct: 317 HGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTL--KDVVSWNTILSGY 374

Query: 514 AK------------------------------HGDWSQ-CFKLYTQMKQSDVRPDLITFL 542
            +                              HG +++   KL+ +M+  +V+P   T+ 
Sbjct: 375 VESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYA 434

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
           G + AC   G ++ G+ +   + +  G+E S     +++ +  R G + EA  +   MP 
Sbjct: 435 GAIAACGELGALKHGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP- 492

Query: 603 KPDARVWGPLLSACKMHSE 621
             D+  W  ++SA   H  
Sbjct: 493 NIDSVSWNAMISALGQHGH 511



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 127/546 (23%), Positives = 231/546 (42%), Gaps = 86/546 (15%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQM- 122
           + +++L+ +YA    L  +   F+++     +++L+  ++   ++       + V++ + 
Sbjct: 89  VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 123 ALQSMYPAEDTYPFV-IRSCSCLLDFISGE---KIHAQVVKLGFDSFDDVGDALVEFYIK 178
           A  S+ P  D Y F  + S    L  IS     ++H  V+K G      V +ALV  Y+K
Sbjct: 149 ASGSLRP--DDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMK 206

Query: 179 CDG---------------------------GF--ENEKGMIQRKFKDLKSR----WNSLI 205
           C+                            G+    + G  +  F+++  +    WN++I
Sbjct: 207 CESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMI 266

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSD 263
           S  V +G + ++FELF+ M +E    D  T  ++L +   +     G+ VH   + +  +
Sbjct: 267 SGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPN 326

Query: 264 FCKD--LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN------------------ 303
           F  +  L VN AL++ YSK  ++  A+ +FD M+ KD V WN                  
Sbjct: 327 FVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 304 -------------IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
                        +M+S Y   GF +++L+L   M     +   +T   A+++   +  +
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGAL 446

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           + GKQ+H ++++ G +   S  N+LI MY  C  +  A  +F  +     VSW++MI   
Sbjct: 447 KHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISAL 506

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSL 469
             H    EAL LF  M  EG+  D ++ + +L AC + G + E  +Y        G+   
Sbjct: 507 GQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPG 566

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW-------SQC 522
               T +     + G I  A +L      +    I W +++S     GD         Q 
Sbjct: 567 EDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI-WEAILSGCRTSGDMELGAHAADQL 625

Query: 523 FKLYTQ 528
           FK+  Q
Sbjct: 626 FKMTPQ 631



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 182/412 (44%), Gaps = 48/412 (11%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           CE+P+  +   AR ++    +++ +  + ++  Y   G +  ++ VF  +     +++  
Sbjct: 207 CESPEATRD--ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNA 264

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++      G   +   ++++M L+ +   E T+  V+ +C+ +  F  G+ +H Q+++L 
Sbjct: 265 MISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQ 324

Query: 162 FDSFDD----VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNS-------------- 203
            +   +    V +ALV FY KC       +       KD+ S WN+              
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVS-WNTILSGYVESSCLDKA 383

Query: 204 -----------------LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
                            ++S  V  G +E + +LF  MR E  +    T    + +  EL
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGEL 443

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            +L+ G+ +H   V   F    S   AL++MY++  ++++A ++F  M + D V WN MI
Sbjct: 444 GALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMI 503

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN--- 363
           SA  Q G  +E+LEL   MV  G   D  + +  +++ +    ++ G +   ++ R+   
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGI 563

Query: 364 --GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVT 412
             G D+    +  LID+      +  AR +  ++  +   S W +++ G  T
Sbjct: 564 IPGEDH----YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRT 611


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 212/642 (33%), Positives = 336/642 (52%), Gaps = 24/642 (3%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VI 138
           L+ +++VF+ +   + + +  +L   +  G + +   + + M  Q +  A +T+     +
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGL--ASNTFALGSAL 100

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK----GMIQRKF 194
           RS +       G ++ +  +K G  +      AL++ Y KC G   + +    GM +R  
Sbjct: 101 RSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKC-GRVRDARQVFDGMPERN- 158

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
                 WN+LI+   ++G    + ELF  M  EG   D  T  +LL + VE  S  L   
Sbjct: 159 ---TVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLL-TAVEGPSCFLMHQ 214

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSG 313
           +H   V       L+V  A ++ YS+  SL+D++ +FD + D +D + WN M+ AY  +G
Sbjct: 215 LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNG 274

Query: 314 FPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIE-WGKQMHANVLRNGSDYQVSV 371
              E+++  + M++ SG   D+++  + +SS S   + +  G+ +H  V+++  +    V
Sbjct: 275 MDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPV 334

Query: 372 HNSLIDMYCECEDLNC----ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            N+LI MY    + NC    A K F+S+  K  VSW+SM+ GY  H  S +AL+ F  M 
Sbjct: 335 CNALIAMYTRYNE-NCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMC 393

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            E V  D       L +   +  L+  K +HG  +  G  S   V++++   Y+K G I+
Sbjct: 394 SENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIID 453

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A + F+E   D    + WN+MI  YA+HG       L+ +M Q     D ITF+GL+T+
Sbjct: 454 DARKSFEEA--DKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITS 511

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C +AGLV+EG  I   M+  YG     EHYA  V+L GRAG +D+A++L+  MPF+PDA 
Sbjct: 512 CSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAM 571

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VW  LL AC++H   ELA   A  L   EP     YVLLS++Y+  G W+  A ++  ++
Sbjct: 572 VWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMK 631

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            RGL K PG SWIE+   VH F A D+SHP+ D IY +L +L
Sbjct: 632 KRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 232/471 (49%), Gaps = 20/471 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  N+  +S L+D YA  G +  ++QVF+ +   N++ +  ++   ++ G+    L ++
Sbjct: 123 GLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELF 182

Query: 120 KQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
            +M  + + P E T+  ++ +    SC L      ++H ++VK G      V +A +  Y
Sbjct: 183 LEMEREGLAPDEATFASLLTAVEGPSCFL----MHQLHGKIVKYGSALGLTVLNAAITAY 238

Query: 177 IKCDGGFENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDS 233
            +C G  ++ + +       +DL S WN+++     NG  +++ + F ++M+  G   D 
Sbjct: 239 SQC-GSLKDSRRIFDGIGDIRDLIS-WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDM 296

Query: 234 GTLINLLRSTVELKSLE-LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS---LEDAKM 289
            +  +++ S  E    +  GR++H + + S       V  AL++MY++      +EDA  
Sbjct: 297 YSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYK 356

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            F+ +  KD V WN M++ Y Q G   ++L+   CM     R D +   AA+ S S +  
Sbjct: 357 CFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAV 416

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           ++ GKQ+H  V+ +G      V +SLI MY +   ++ ARK F+     + V W++MI G
Sbjct: 417 LQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFG 476

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNS 468
           Y  H Q+     LF+EM      +D +T + ++ +C + G + E  + L+    K G+  
Sbjct: 477 YAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGV-P 535

Query: 469 LSSVNTAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           L   + A  +  Y + G ++ A +L D    +  D + W +++ A   HG+
Sbjct: 536 LRMEHYACGVDLYGRAGQLDKAKKLIDSMPFE-PDAMVWMTLLGACRIHGN 585



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 4/177 (2%)

Query: 373 NSLIDMYCEC--EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           N L+  Y     + L  AR++FD V  +  VSW++++          EA RL   M  +G
Sbjct: 29  NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQG 88

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           +  +   + + L +            L   ++K GL +     +A+   YAKCG +  A 
Sbjct: 89  LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDAR 148

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
           ++FD   +  ++ ++WN++I+ Y + GD +   +L+ +M++  + PD  TF  LLTA
Sbjct: 149 QVFD--GMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTA 203


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 209/643 (32%), Positives = 340/643 (52%), Gaps = 28/643 (4%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VI 138
           L+ +++VF+ I  P++  + ++L      G +     + + M  Q +  A +T+     +
Sbjct: 41  LAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQGV--AANTFALGSSL 98

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           RS +       G ++ +   K G         AL+  Y KC G   + +    R F  + 
Sbjct: 99  RSAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKC-GRVRDAR----RVFDGMP 153

Query: 199 SR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
            R    WN+LI+  V++GK  ++ ELF  M  E    D  T   LL +  +  +  L   
Sbjct: 154 ERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALL-TAFDDSNYFLMHQ 212

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSG 313
           +H   V       L+V+ A ++ YS+  +L +++ +FD++ D +D + WN M+ AY   G
Sbjct: 213 LHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHG 272

Query: 314 FPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
              +++   + M+R SG + D+++  + +S+     + + G+ +H  V++NG +    V 
Sbjct: 273 MDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDDHQ-GRAIHGLVIKNGLEGATPVC 331

Query: 373 NSLIDMY------CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
           N+LI MY      C  ED   A K FDS+  K  VSW+SM+ GY  H+ S +ALR F  M
Sbjct: 332 NALIAMYTRISGNCMMED---ACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCM 388

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
           +   +  D       L +C  +  L+  + +HG  +  G  S + V++++   Y+K G +
Sbjct: 389 QSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGIL 448

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546
           + A + F+E   D    + WNSMI  YA+HG       L+ +M +  V  D +TF+GL+T
Sbjct: 449 DDAKKSFEEA--DKGSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLIT 506

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           +C +AGLV+EG  I   M+  YG     EHYA  V+L GRAG +++A+EL+  MPF+PDA
Sbjct: 507 SCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDA 566

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
            VW  LL AC++H   ELA   A  L+  EP+    Y+LLS++Y+  G W+  A ++  +
Sbjct: 567 MVWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILLSSMYSGLGMWSDRAIVQREM 626

Query: 667 RDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           ++RGL K PG SWIE+   VH F A D+SHP+ D IY +L +L
Sbjct: 627 KNRGLSKVPGWSWIEVKNEVHSFNAEDRSHPRMDEIYEMLSLL 669



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/513 (24%), Positives = 248/513 (48%), Gaps = 13/513 (2%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  N+  +S L+  YA  G +  +++VF+ +   N++ +  ++    + G+  + L ++
Sbjct: 121 GLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELF 180

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M  + + P E T+  ++ +      F+   ++H ++VK G      V +A +  Y +C
Sbjct: 181 INMETERLVPDEATFAALLTAFDDSNYFLM-HQLHGKIVKYGSALGLTVSNAAITAYSQC 239

Query: 180 DGGFENEKGMIQ-RKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLI 237
               E+ +   Q    +DL S WN+++     +G    +   F +++R  G + D  +  
Sbjct: 240 GALAESRRIFDQIGDSRDLIS-WNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFT 298

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS---LEDAKMLFDKM 294
           +++ +  E    + GR +H + + +       V  AL++MY++++    +EDA   FD +
Sbjct: 299 SIISTCPEHDDHQ-GRAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSL 357

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
             KD V WN M++ Y Q     ++L    CM  +  R D +   AA+ S S +  ++ G+
Sbjct: 358 LIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGR 417

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H +++ +G      V +SLI MY +   L+ A+K F+     + V W+SMI GY  H 
Sbjct: 418 QIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHG 477

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVN 473
            +     LF+EM    V +D VT + ++ +C + G + E  + L+    + G+  L   +
Sbjct: 478 HAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETRYGI-PLRMEH 536

Query: 474 TAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            A  +  Y + G +E A EL D    +  D + W +++ A   HG+     ++ + +  S
Sbjct: 537 YACGVDLYGRAGQLEKAKELIDSMPFE-PDAMVWMTLLGACRIHGNMELASEVASHLLVS 595

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           + +    T++ L +     G+  +  I+ +EMK
Sbjct: 596 EPKQH-STYILLSSMYSGLGMWSDRAIVQREMK 627


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 205/656 (31%), Positives = 353/656 (53%), Gaps = 21/656 (3%)

Query: 33  THSFSLLNL--CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           +H+  LL L  C + Q  +++HA  +++ G     +L + L+ +YA LG ++ + +VF+ 
Sbjct: 50  SHASLLLRLQSCPDFQEARRLHAA-VLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDG 108

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFIS 149
           +   NS  +  ++K L   G + + L ++  M        +  TYP VI++C+ L     
Sbjct: 109 MPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQ 168

Query: 150 GEKIHAQVVKLGFDSFDD-----VGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNS 203
           G K+  ++V+    S +      V  ALV+ + KC G  +  + + +  + +DL + W +
Sbjct: 169 GRKVW-EMVEADIASGNARPNVFVQCALVDMFAKC-GCLDEARNVFESMQVRDLAA-WTA 225

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +I   V +G   +  +LF  MR EG   DS     ++ +      L++G  +H  AV S 
Sbjct: 226 MIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSG 285

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              D+ V+ AL+ MY K   +E A  LF   + KD V W+ +I  Y Q+G    S+ L  
Sbjct: 286 ASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFC 345

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M+  G   +  T  + +  +S +K I  GK++H   +R+G +    V ++LID+Y +  
Sbjct: 346 EMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQG 405

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTH---DQSLEALRLFSEMKLEGVEVDFVTIIN 440
            +  A  IF     K +  W+SM+ GY  +   D +  ALRL  ++   G++ D VT+++
Sbjct: 406 LIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKV---GLKPDHVTVVS 462

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +LP C     L   K LH Y +K  +NS+ SVN A+   Y KCG +E+A E+F  + +  
Sbjct: 463 VLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVF--QLMTE 520

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           ++ +T+N +IS++ KH    Q    +  MK+  + PD +TF+ LL+ C +AGL+++G  +
Sbjct: 521 RNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHL 580

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           +  M   Y   P +EHY+ +V+L  R G +DEA   + +M  +P+  V G LL+AC++H+
Sbjct: 581 YHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHN 640

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
             ++AEL  +++    P + G ++LLSNIYA AG W+ V ++RT +++R LKK  G
Sbjct: 641 RMDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETG 696


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 181/481 (37%), Positives = 278/481 (57%), Gaps = 8/481 (1%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L+ S +E  SL  G  VH   V S   +D  + T L++MY  L S++ A  +FD+  +K 
Sbjct: 80  LINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKT 139

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI----AAVSSISTMKNIEWGK 354
             VWN +  A   +   ++ L L   M   G  ++ FT      A V S  ++  +  GK
Sbjct: 140 IFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGK 199

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           ++HA++LR+G +  V V  +L+D+Y     ++ A  +F ++  K +VSWS+MI  Y  ++
Sbjct: 200 EIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNE 259

Query: 415 QSLEALRLFSEMKLEGVEV--DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
             ++AL LF  M LE  +   + +T++++L AC ++ ALEH K +H Y ++ GL+S   V
Sbjct: 260 MPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPV 319

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
              +   Y +CG I     +FD  K   +D+I+WNS+IS Y  HG   +  +++  M   
Sbjct: 320 LNTLITMYGRCGEISTGQRVFDYMK--KRDVISWNSLISIYGMHGLGKKAIQIFENMINR 377

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            V P  ITF+ +L AC +AGLVEE +I+F+ M   Y   P  EHYA MV++LGRA  +DE
Sbjct: 378 GVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDE 437

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A EL+++M FKP   VWG LL +C++H   ELAE  +  L  +EP+NAGNYVLLS+IYA 
Sbjct: 438 AIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAK 497

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           +  WN V ++R  L  RGL+K P CSWIE+ + ++   + ++ +PQ + +   L  L  E
Sbjct: 498 SRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTE 557

Query: 713 I 713
           I
Sbjct: 558 I 558



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 162/339 (47%), Gaps = 15/339 (4%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T+  +I SC        G  +H ++V  G D    +   L+  Y  CD G  +   
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMY--CDLGSVDHAC 129

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
            +   F + + +    WN++        + E    L+  M   G   +  T   +L++ V
Sbjct: 130 KV---FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACV 186

Query: 245 ----ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
                +  L  G+ +H   +   +   + V T LL +Y++   +  A  +F  M DK+ V
Sbjct: 187 VSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIV 246

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRA--DLFTAIAAVSSISTMKNIEWGKQMHA 358
            W+ MI+ Y ++  P ++LEL   M+        +  T ++ + + +++  +E GK +HA
Sbjct: 247 SWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHA 306

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            VLR G D  + V N+LI MY  C +++  +++FD +K + V+SW+S+I  Y  H    +
Sbjct: 307 YVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKK 366

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           A+++F  M   GV   ++T I +L AC + G +E  K L
Sbjct: 367 AIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKIL 405



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 159/334 (47%), Gaps = 13/334 (3%)

Query: 38  LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           L+N C     L     +H R ++  GL Q+  L++ LI+ Y +LG +  + +VF+     
Sbjct: 80  LINSCIEQNSLSDGVDVHHR-LVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREK 138

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC----LLDFISG 150
              ++  I + L+     E  L++Y QM    +     TY +V+++C      +     G
Sbjct: 139 TIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKG 198

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK-SRWNSLISLAV 209
           ++IHA +++ G++    V   L++ Y +   G+ +    +     D     W+++I+   
Sbjct: 199 KEIHAHILRHGYEGHVHVMTTLLDVYAR--FGYVSYASSVFGAMPDKNIVSWSAMIACYA 256

Query: 210 QNGKSEKSFELFKLMRMEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
           +N    K+ ELF++M +E  +   +  T++++L++   L +LE G++VH   +       
Sbjct: 257 KNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDST 316

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           L V   L++MY +   +   + +FD M  +D + WN +IS Y   G  K+++++   M+ 
Sbjct: 317 LPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMIN 376

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
            G      T I  + + S    +E  K +  ++L
Sbjct: 377 RGVSPSYITFITVLCACSHAGLVEEAKILFESML 410


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 207/675 (30%), Positives = 332/675 (49%), Gaps = 96/675 (14%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC-------------- 179
           +  ++++   + D  +G  +H Q++K G      + + L+ FY K               
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 180 ----------------DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
                            G FE  + ++          W ++I    Q G  + +  +F  
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVH----------CVAVVSDF--------- 264
           M  E       T+ N+L S    ++L++GR +H          CV V +           
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 265 ------------CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
                        K++S   AL+S+Y +    E A   F+KM D+D V WN MIS Y Q 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 313 GFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           G+  E+L +   M+     + D FT  + +S+ + ++ +  GKQ+HA +LR  ++   +V
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 372 HNSLIDMYCE---------------CEDLNC------------------ARKIFDSVKTK 398
            N+LI MY +                 +LN                   AR+IF+ ++ +
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VV+W++MI GYV +    +AL LF  M  EG E +  T+  +L    ++  LEH K +H
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             ++K G +S  SV  A+   YAK G I +A  +FD      K+I++W SMI A A+HG 
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPN-GKKEIVSWTSMIMALAQHGL 491

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
             +   L+ +M    ++PD IT++G+L+AC + GLVE+GR  +  M E +  EP+  HYA
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYA 551

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
            M++L GRAG + EA   ++ MP +PD   WG LL++CK+H   +LA++ AE+L+ ++P 
Sbjct: 552 CMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPG 611

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           N+G Y+ L+N+Y+A GKW   A+ R  ++DRG++K  G SWI I   VH F   D  HPQ
Sbjct: 612 NSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQ 671

Query: 699 ADAIYTILGILELEI 713
            D IY ++  +  EI
Sbjct: 672 KDEIYKLMAEIWEEI 686



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/580 (26%), Positives = 262/580 (45%), Gaps = 113/580 (19%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-----SITSPNSL 97
           ++P   + +H + II  GLH  + L +NL+  YA  G L  +  VF+     S  S N+L
Sbjct: 24  KDPFAGRSVHCQ-IIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTL 82

Query: 98  LYG--------------------------TILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           + G                           I+   ++FG ++  + ++ +M  + + P++
Sbjct: 83  ISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQ 142

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC------------ 179
            T   V+ SC+       G KIH+ VVKLG  S   V  +L+  Y KC            
Sbjct: 143 FTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDR 202

Query: 180 ------------------DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKS 217
                              G FE    +   +F+ +  R    WNS+IS   Q G + ++
Sbjct: 203 MTVKNISTWNALISLYMQSGQFE----LAASQFEKMPDRDIVSWNSMISGYSQQGYNLEA 258

Query: 218 FELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV--------------AVVS 262
             +F K++     + D+ TL ++L +   L+ L +G+ +H                A++S
Sbjct: 259 LAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALIS 318

Query: 263 DFCKDLSVN-------------------TALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
            + K   V                    T+LL  Y+KL +++ A+ +F+K+ D+D V W 
Sbjct: 319 MYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWT 378

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI  Y Q+G   ++LEL   MV  G   + +T  A +S  S++  +E GKQ+HA+ ++ 
Sbjct: 379 AMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKA 438

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           G     SV N+LI MY +  ++N A+++FD     K +VSW+SMI     H    EA+ L
Sbjct: 439 GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINL 498

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSV--NTAIFIS 479
           F  M   G++ D +T + +L AC ++G +E   KY   Y+M   ++ +     + A  I 
Sbjct: 499 FERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKY---YNMMTEVHEIEPTLSHYACMID 555

Query: 480 -YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            Y + G ++ A  LF E      D I W S++++   H +
Sbjct: 556 LYGRAGLLQEA-YLFIESMPIEPDNIAWGSLLASCKIHKN 594



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 213/481 (44%), Gaps = 66/481 (13%)

Query: 23  ANQTRPHMTATHSF--------------SLLNL---CENPQHLQQIHARYIILHGLHQNL 65
           ANQT       HSF              SLLN+   C +P   + +  R  +     +N+
Sbjct: 154 ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTV-----KNI 208

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
              + LI  Y   G   L+   F  +   + + + +++   S+ G   + L ++ +M  +
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 126 -SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
            S+ P   T   ++ +C+ L     G++IHA +++   ++   VG+AL+  Y K  GG E
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAK-SGGVE 327

Query: 185 NEKGMIQRK-----------------------------FKDLKSR----WNSLISLAVQN 211
             + +++                               F  L+ R    W ++I   VQN
Sbjct: 328 IARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQN 387

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G    + ELF+LM  EG E +S TL  +L  +  L  LE G+ +H  A+ +      SV 
Sbjct: 388 GLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGF 330
            AL++MY+K  ++  AK +FD  + K  +V W  MI A  Q G  KE++ L   M+  G 
Sbjct: 448 NALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCA 388
           + D  T +  +S+ + +  +E G++ + N++    + +  +S +  +ID+Y     L  A
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYY-NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 389 RKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKL---EGVEVDFVTIINILPA 444
               +S+  +   ++W S++     H  + +  ++ +E  L    G    ++ + N+  A
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNA-DLAKVAAERLLLIDPGNSGAYLALANVYSA 625

Query: 445 C 445
           C
Sbjct: 626 C 626


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 273/465 (58%), Gaps = 2/465 (0%)

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           S +  ++L   R VH     +   ++L+V   LL MY +  +LEDA+ LFD MS +    
Sbjct: 59  SLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYS 118

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           W++++  Y + G       +   ++RSG   D ++A   + +   +K+++ G+ +H   L
Sbjct: 119 WSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITL 178

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           + G DY   V  +L+DMY  C+ +  A +IF  +  + + +W+ MI         +E+L 
Sbjct: 179 KCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLV 238

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
            F  M+ +G+  D V ++ ++ AC  +GA+   K +H Y    G +    + TA+   YA
Sbjct: 239 FFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYA 298

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A  +FD  ++  +++ITW++MI+AY  HG   +  +L+  M +S + P+ ITF
Sbjct: 299 KCGSVESARWIFDRMQV--RNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITF 356

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + LL AC +AGL+EEG+  F  M + YG  P  +HY  MV+LLGRAG +DEA E+++ MP
Sbjct: 357 VSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMP 416

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            + D  +WG LL AC++H   +LAE  A  L+ ++ +  G+YVLLSNIYA AGKW  +AK
Sbjct: 417 VEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAK 476

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            R  +   GL+K PG +WIE+G+ +++F   D++HP+++ IY +L
Sbjct: 477 TRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKML 521



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 179/386 (46%), Gaps = 4/386 (1%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           DT  F     SC  +     ++HAQ+   G      V + L+  Y++  G  E+ + +  
Sbjct: 52  DTKRFRSSLLSCR-NLFQVRQVHAQIATNGAFRNLAVANKLLYMYVE-RGALEDAQELFD 109

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
              K     W+ ++    + G     F +F+ +   GA  D  +   ++R+  +LK L+ 
Sbjct: 110 GMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKC 169

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           GR++HC+ +         V   L+ MY++   +EDA  +F KM  +D   W +MI A  +
Sbjct: 170 GRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAE 229

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           SG P ESL     M   G   D    +  V + + +  +   K +HA +   G    V +
Sbjct: 230 SGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVIL 289

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             ++IDMY +C  +  AR IFD ++ + V++WS+MI  Y  H Q  +AL LF  M   G+
Sbjct: 290 GTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGI 349

Query: 432 EVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
             + +T +++L AC + G +E   ++      + G+       T +     + G ++ A 
Sbjct: 350 LPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEAL 409

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKH 516
           E+ +   ++ KD + W +++ A   H
Sbjct: 410 EMIEGMPVE-KDEVLWGALLGACRIH 434



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 201/411 (48%), Gaps = 15/411 (3%)

Query: 6   PPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNL 65
           P  CS +S     L +   + R         SLL+ C N   ++Q+HA+ I  +G  +NL
Sbjct: 36  PTPCSQESECSHVLHYDTKRFRS--------SLLS-CRNLFQVRQVHAQ-IATNGAFRNL 85

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            +++ L+  Y   G L  +Q++F+ ++  +   +  I+   +K G +     +++++ L+
Sbjct: 86  AVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFREL-LR 144

Query: 126 SMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           S  P +D + P VIR+C  L D   G  IH   +K G D    V   LV+ Y +C    +
Sbjct: 145 SGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVED 204

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
             +  ++   +DL + W  +I    ++G   +S   F  MR +G   D   L+ ++ +  
Sbjct: 205 AHQIFVKMWKRDLAT-WTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACA 263

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           +L ++   + +H     + +  D+ + TA++ MY+K  S+E A+ +FD+M  ++ + W+ 
Sbjct: 264 KLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSA 323

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN- 363
           MI+AY   G  +++LEL   M+RSG   +  T ++ + + S    IE G++  +++    
Sbjct: 324 MIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEY 383

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMIKGYVTH 413
           G    V  +  ++D+      L+ A ++ + +   K  V W +++     H
Sbjct: 384 GVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIH 434


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 205/656 (31%), Positives = 353/656 (53%), Gaps = 21/656 (3%)

Query: 33  THSFSLLNL--CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           +H+  LL L  C + Q  +++HA  +++ G     +L + L+ +YA LG ++ + +VF+ 
Sbjct: 55  SHASLLLRLQSCPDFQEARRLHAA-VLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDG 113

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFIS 149
           +   NS  +  ++K L   G + + L ++  M        +  TYP VI++C+ L     
Sbjct: 114 MPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQ 173

Query: 150 GEKIHAQVVKLGFDSFDD-----VGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNS 203
           G K+  ++V+    S +      V  ALV+ + KC G  +  + + +  + +DL + W +
Sbjct: 174 GRKVW-EMVETDIASGNARPNVFVQCALVDMFAKC-GCLDEARNVFESMQVRDLAA-WTA 230

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD 263
           +I   V +G   +  +LF  MR EG   DS     ++ +      L++G  +H  AV S 
Sbjct: 231 MIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSG 290

Query: 264 FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
              D+ V+ AL+ MY K   +E A  LF   + KD V W+ +I  Y Q+G    S+ L  
Sbjct: 291 ASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFC 350

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M+  G   +  T  + +  +S +K I  GK++H   +R+G +    V ++LID+Y +  
Sbjct: 351 EMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQG 410

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTH---DQSLEALRLFSEMKLEGVEVDFVTIIN 440
            +  A  IF     K +  W+SM+ GY  +   D +  ALRL  ++   G++ D VT+++
Sbjct: 411 LIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKV---GLKPDHVTVVS 467

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +LP C     L   K LH Y +K  +NS+ SVN A+   Y KCG +E+A E+F  + +  
Sbjct: 468 VLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVF--QLMTE 525

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           ++ +T+N +IS++ KH    Q    +  MK+  + PD +TF+ LL+ C +AGL+++G  +
Sbjct: 526 RNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHL 585

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           +  M   Y   P +EHY+ +V+L  R G +DEA   + +M  +P+  V G LL+AC++H+
Sbjct: 586 YHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHN 645

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
             ++AEL  +++    P + G ++LLSNIYA AG W+ V ++RT +++R LKK  G
Sbjct: 646 RMDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETG 701


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 207/685 (30%), Positives = 362/685 (52%), Gaps = 29/685 (4%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN--SITSPNSLLYGTILKNL 106
           +Q+H  + I  G   +  + +  I  Y+  G+L  +Q+VF+  S+ + + LL+ +I+   
Sbjct: 141 RQLHG-WSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAY 199

Query: 107 SKFGEYEKTLLVY-KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
              G + + L ++ K +++  + P E TY  V+ +C    +   G  +H +++K G ++ 
Sbjct: 200 IFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEA- 258

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK-LM 224
            ++ ++LV FY KC G  ++   + +R  +     WN++I+   Q G+ E +  LF+ ++
Sbjct: 259 TNLWNSLVTFYGKC-GNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRML 317

Query: 225 RMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           ++E   + +  T ++LL +   L +L  GR +H          D S+  +L++ YSK   
Sbjct: 318 KVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCRE 377

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI----A 339
           +  A+ +F+++  +D + WN M++ Y Q+       ++   M+ SG   D  +      A
Sbjct: 378 VGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNA 437

Query: 340 AVSSISTMKNIEWGKQMHANVLR--NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           A    S +     GK++H  +LR        +SV N+++ MY +   +  A KIF  +K 
Sbjct: 438 ASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKN 497

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +   SW++M+ GY  + +  + L +F ++  +G  +D V++  +L +C  + +L+  K  
Sbjct: 498 RDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQF 557

Query: 458 HGYSMKL-------GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           H    KL         +SL S+N A+   Y+KCG I+ A ++F   K++ KD+ +W +MI
Sbjct: 558 HAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVF--LKMERKDVFSWTAMI 615

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +  A HG   +  +L+ +MK   ++P+ +TFL LL AC + GLV+EG   F  M   YG 
Sbjct: 616 TGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGL 675

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVK-----DMPFKPDA-RVWGPLLSACKMHSETEL 624
            PS EHYA M++L GR+G  D A+ LV+       P+  D   +W  LL AC    + +L
Sbjct: 676 SPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDL 735

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
               A K++ +EPE+   Y+LL+N+YA++G W    K+R  +RD+GL+K  GCSWI+ G 
Sbjct: 736 GVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGN 795

Query: 685 LVHEFWAADQSHPQADAIYTILGIL 709
             H F A D  HPQ   IY  L  L
Sbjct: 796 RRHVFVAGDVYHPQRKEIYEKLAQL 820



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 206/390 (52%), Gaps = 17/390 (4%)

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           Q+ F +  +R    W++LI+   + G   ++F LF+ M  EG + +  +L +LL+ +   
Sbjct: 75  QQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCST 134

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS--DKDRVVWNI 304
             + L R +H  ++ + F  D  +  A ++MYS+   LEDA+ +FD+ S    D ++WN 
Sbjct: 135 GEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNS 194

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHANVLRN 363
           +I+AY   G   E L L   MV  G  A    T  + V++  +    ++G  +H  +++ 
Sbjct: 195 IIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKA 254

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G +   ++ NSL+  Y +C +L  A ++F+ +  K VVSW++MI       +   AL LF
Sbjct: 255 GLE-ATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLF 313

Query: 424 SEM-KLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
             M K+E  V+ + VT +++L A   + AL   + +H +  +L L   +S+  ++   Y+
Sbjct: 314 RRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYS 373

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KC  +  A E+F  E++  +DII+WNSM++ Y ++    +CF ++ +M  S + PD  + 
Sbjct: 374 KCREVGKAREIF--ERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHS- 430

Query: 542 LGLLTACVNAGLVE-EGRIIFKEMKESYGY 570
              LT   NA   +  G I F+  KE +GY
Sbjct: 431 ---LTIIFNAASRDSSGLIYFRRGKEIHGY 457



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 178/362 (49%), Gaps = 16/362 (4%)

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           S F    S  +  L   S+   L+ A+ LFD   ++D + W+ +I+AY + G   ++  L
Sbjct: 49  SQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGL 108

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M+  G + + F+  + +    +   I   +Q+H   +R G      +  + I MY  
Sbjct: 109 FQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSR 168

Query: 382 CEDLNCARKIFD--SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV----EVDF 435
           C  L  A+++FD  S+    ++ W+S+I  Y+ H   +E LRLF +M   GV    E+ +
Sbjct: 169 CGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTY 228

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            +++N   AC + G  ++   +HG  +K GL + +  N+ +   Y KCG ++ A +LF  
Sbjct: 229 ASVVN---ACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTF-YGKCGNLQHASQLF-- 282

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPDLITFLGLLTACVNAGL 553
           E+I  KD+++WN+MI+A  + G+      L+ +M + +  V+P+ +TFL LL+A      
Sbjct: 283 ERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSA 342

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +  GR I   +      E       S++    +   + +ARE+ + +  + D   W  +L
Sbjct: 343 LRCGREIHAHIFR-LSLEVDTSITNSLITFYSKCREVGKAREIFERLLLR-DIISWNSML 400

Query: 614 SA 615
           + 
Sbjct: 401 AG 402



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 151/284 (53%), Gaps = 7/284 (2%)

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           E E L CA+++FD+   + V+SWS++I  Y       +A  LF +M  EG++ +  ++ +
Sbjct: 67  EHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLAS 126

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L    + G +   + LHG+S++ G    S +  A    Y++CG +E A  +FDE  + +
Sbjct: 127 LLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLA 186

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRI 559
            DI+ WNS+I+AY  HG W +  +L+ +M     V P  +T+  ++ AC ++G  + G +
Sbjct: 187 LDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAM 246

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +   + ++ G E +   + S+V   G+ G++  A +L + +  + D   W  +++A +  
Sbjct: 247 VHGRIIKA-GLEATNL-WNSLVTFYGKCGNLQHASQLFERIS-RKDVVSWNAMIAANEQR 303

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
            E E A     +++ +EP    N V   ++ +A    +G++ +R
Sbjct: 304 GEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAV---SGLSALR 344


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 184/617 (29%), Positives = 333/617 (53%), Gaps = 12/617 (1%)

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + + +++   ++ G  E  L ++  M    + P +      + +C+ L    +GE++H
Sbjct: 5   NVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVH 64

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           +  V+ GF     +G  L+E Y +C G     K +  R        + SLIS   +NG+ 
Sbjct: 65  SLAVRAGFAGDAWIGSCLIEMYSRC-GSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEF 123

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV--NT 272
           E + E    M  +G + +  T+  +L +   +    LG+ +H   +     +  SV  +T
Sbjct: 124 ELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSST 179

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+  YS+    + AK +FD +  K+ V W  M+  Y + G  +E+L++   M+  G   
Sbjct: 180 ALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDP 239

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           + F A++ V  +    +I  G+Q+H + +++     + V N+L+ MY     +     + 
Sbjct: 240 NEF-ALSIV--LGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAML 296

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           + ++   +VSW++ I     +    +A+ L  +M  EG   +     ++L +C ++ +L+
Sbjct: 297 NKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLD 356

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
                H  ++KLG +S      A+   Y+KCG +  A   FD   + + D+ +WNS+I  
Sbjct: 357 QGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD--VMHTHDVTSWNSLIHG 414

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           +A+HGD ++  +++++M+ + ++PD  TFLG+L  C ++G+VEEG + F+ M + Y + P
Sbjct: 415 HAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTP 474

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
           +  HYA M+++LGR G  DEA  ++ DMPF+PDA +W  LL++CK+H   ++ +L A++L
Sbjct: 475 APSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRL 534

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + +   ++ +YVL+SNIYA  G+W    K+R  + + G+KK  GCSWIEI   VH F + 
Sbjct: 535 MELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASR 594

Query: 693 DQSHPQADAIYTILGIL 709
           D SHP +D+IY +LG L
Sbjct: 595 DMSHPNSDSIYQMLGEL 611



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 144/558 (25%), Positives = 266/558 (47%), Gaps = 56/558 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H+   +  G   +  + S LI+ Y+  G L  +++VF+ + SP+ + Y +++    +
Sbjct: 61  EQVHS-LAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV-KLGFDSFDD 167
            GE+E       QM  Q + P E T   ++ +C  +L    G++IH  ++ K+G  S   
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSV 175

Query: 168 VGD-ALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
               AL++FY + +G F+  K +           W S++ L +++G+ E++ ++F  M  
Sbjct: 176 YSSTALIDFYSR-NGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMIS 234

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG + +   L  +L +     S+ LGR +HC A+  D   D+ V+ ALLSMY +   +E+
Sbjct: 235 EGVDPNEFALSIVLGAC---GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEE 291

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
            + + +K+ + D V W   ISA +Q+GF ++++ LL  M   GF  + +   + +SS + 
Sbjct: 292 LEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCAD 351

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           + +++ G Q H   L+ G D ++   N+LI+MY +C  +  AR  FD + T  V SW+S+
Sbjct: 352 VASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSL 411

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I G+  H  + +AL +FS+M+  G++ D  T + +L  C + G +E              
Sbjct: 412 IHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEE------------- 458

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS----MISAYAKHGDWSQC 522
                                  GELF    ID        S    MI    ++G + + 
Sbjct: 459 -----------------------GELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEA 495

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            ++   M      PD + +  LL +C     ++ G++    + E    + +   Y  M N
Sbjct: 496 LRMINDMP---FEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSAS--YVLMSN 550

Query: 583 LLGRAGHMDEARELVKDM 600
           +    G  ++AR++ + M
Sbjct: 551 IYAMHGEWEDARKVRRRM 568



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 168/345 (48%), Gaps = 29/345 (8%)

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           M  K+ V W  ++S Y ++G P+ +L +   MV SG   + F   AA+ + + +  +  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           +Q+H+  +R G      + + LI+MY  C  L  A+++FD + +  VV ++S+I  +  +
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM-KLGLNSLSSV 472
            +   A     +M  +G++ +  T+  IL AC  +      + +HGY + K+GL S S  
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLG----QQIHGYLIKKIGLRSQSVY 176

Query: 473 -NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
            +TA+   Y++ G  ++A  +FD   +  K++++W SM+  Y + G   +  +++  M  
Sbjct: 177 SSTALIDFYSRNGEFKLAKAVFD--SLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMIS 234

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIF-KEMKESYGYEPSQEHYASMVNLLGRAGHM 590
             V P+      +L AC + GL   GR +    +K     +    +  +++++ GR G +
Sbjct: 235 EGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSN--ALLSMYGRTGLV 289

Query: 591 DEARELVKDMPFKPDARVWGPLLSA--------------CKMHSE 621
           +E   ++  +   PD   W   +SA              C+MHSE
Sbjct: 290 EELEAMLNKIE-NPDLVSWTTAISANFQNGFGEKAIALLCQMHSE 333


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 204/657 (31%), Positives = 342/657 (52%), Gaps = 28/657 (4%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLI-DSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           HL +  AR +     H+N I S NLI  +Y++ G L  +Q +F S    N+  +  +++ 
Sbjct: 272 HLHR--ARAMFDQMPHKN-IFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRA 328

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            +  G     L +++ M  + + P   T   V+    C +       +H   +K G D+ 
Sbjct: 329 HAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSLHPFAIKFGLDTH 383

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V + L++ Y K        +  ++   KD  + +N+++    + G   ++ +LF  MR
Sbjct: 384 VFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVT-YNAMMMGCSKEGLHTQALQLFAAMR 442

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G            R  + L      R     +V++ F     VN +LL  YSK   L+
Sbjct: 443 RAGYS----------RHPLHLLQYSHSR-SRSTSVLNVF-----VNNSLLDFYSKCDCLD 486

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           D + LFD+M ++D V +N++I+AY  +      L L   M + GF   +      +S   
Sbjct: 487 DMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG 546

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++ ++  GKQ+HA ++  G   +  + N+LIDMY +C  L+ A+  F +   K+ +SW++
Sbjct: 547 SLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTA 606

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +I GYV + Q  EAL+LFS+M+  G+  D  T  +I+ A  ++  +   + LH Y ++ G
Sbjct: 607 LITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSG 666

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
             S     + +   YAKCGC++ A   FDE  +  ++ I+WN++ISAYA +G+     K+
Sbjct: 667 YKSSVFSGSVLVDMYAKCGCLDEALRTFDE--MPERNSISWNAVISAYAHYGEAKNAIKM 724

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +  M      PD +TFL +L AC + GL +E    F  MK  Y   P +EHYA +++ LG
Sbjct: 725 FEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLG 784

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           R G   + ++++ +MPFK D  +W  +L +C++H   ELA + A+KL  MEP +A  YV+
Sbjct: 785 RVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVI 844

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           LSNIYA AG+W   A ++  +RDRG++K  G SW+EI + ++ F + D + P  D I
Sbjct: 845 LSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 901


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 283/471 (60%), Gaps = 11/471 (2%)

Query: 252 GRIVHCVAVVSD-FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           GR +H +A+ S  F  D    +ALL MY+  +   DA+  FD++   + V+   M S Y 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 311 QSGFPKESLELLMCMVRSG--FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           ++     SL L   ++ SG     D   A+ A S+ + + +      +HA V++ G D  
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 369 VSVHNSLIDMYCEC--EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V N+++D Y +    DL  ARK+FD+++ K VVSW+SMI  Y  +  S +AL L+ +M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 427 -KLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
             + G ++ + VT+  IL AC + G ++  K +H   +++GL     V T++   Y+KCG
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCG 346

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +EMA + F  +KI  K+I++W++MI+ Y  HG   +   ++ +M +S   P+ ITF+ +
Sbjct: 347 RVEMARKAF--QKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISV 404

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC +AGL+++GR  +  MK+ +G EP  EHY  MV+LLGRAG +DEA  L+K+M  KP
Sbjct: 405 LAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKP 464

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           DA +WG LLSAC++H   ELAE++A++L  ++  N G YVLLSNIYA AG W  V +MR 
Sbjct: 465 DAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRV 524

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            ++ RG++K PG S +E+    H F+  D+SHPQ   IY+ LG L LE M+
Sbjct: 525 LVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKL-LEKMQ 574



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 170/358 (47%), Gaps = 26/358 (7%)

Query: 84  SQQVFNSITSPNSLLY-----GTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138
           +++ F+ I SPN ++      G +  NL     Y    L  K +A  S    ++    V 
Sbjct: 144 ARKAFDEIPSPNPVIITAMASGYVRNNLV----YPSLALFRKLIASGSATAVDEAAALVA 199

Query: 139 RSCSCLL-DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF--- 194
            S S  + D      +HA VVK G D    V + +++ Y K   G   + G  ++ F   
Sbjct: 200 FSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAK---GGRRDLGAARKVFDTM 256

Query: 195 -KDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGA-EFDSGTLINLLRSTVELKSLEL 251
            KD+ S WNS+I+L  QNG S  +  L+ K++ + G+ + ++ TL  +L +     +++ 
Sbjct: 257 EKDVVS-WNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQT 315

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G+ +H   V     +++ V T+++ MYSK   +E A+  F K+ +K+ + W+ MI+ Y  
Sbjct: 316 GKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGM 375

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH-ANVLRNGSDYQVS 370
            G  +E+L++   M RSG   +  T I+ +++ S    ++ G+  + A   R G +  V 
Sbjct: 376 HGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVE 435

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQ----SLEALRLF 423
            +  ++D+      L+ A  +   +K K   + W +++     H       + A RLF
Sbjct: 436 HYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLF 493


>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
          Length = 830

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 209/688 (30%), Positives = 355/688 (51%), Gaps = 52/688 (7%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y++  GL   + ++S+L D Y   G+L  +++VF
Sbjct: 173 NFVVPNVCKACGALQWSRFGRGVHG-YVVKAGLEDCVFVASSLADMYGKCGVLDDARKVF 231

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N + +  +L    + G  E+ + +   M    + P+  T    + + + +    
Sbjct: 232 DEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVA 291

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  +  G +  + +G +L+ FY K  G  E  + +  R F      WN LIS  
Sbjct: 292 EGKQSHAIAILNGLELDNILGTSLLNFYCKV-GLIEYAEMIFDRMFDKDVVTWNLLISGY 350

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  E +  + +LMR+E  ++D  TL  L+ +    K+L+ G+ V C  +      D+
Sbjct: 351 VQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDI 410

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + +  + MY+K  S+ DAK +FD   +KD ++WN +++AY +SG   E+L L   M   
Sbjct: 411 VLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLE 470

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
               ++ T    + S+                LRNG                   ++N A
Sbjct: 471 SVPPNVITWNLIILSL----------------LRNG-------------------EVNEA 495

Query: 389 RKIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +++F  +++  +    +SW++M+ G V +  S EA+    +M+  G+  +  +I   L A
Sbjct: 496 KEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNAFSITVALSA 555

Query: 445 CVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
             N+ +L   + +HGY ++ L  +S  S+ T++   YAKCG I  A  +F  +     ++
Sbjct: 556 SANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVDMYAKCGDINKAERVFGSKLY--SEL 613

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
             +N+MISAYA +G+  +   LY  ++    +PD ITF  LL+AC + G + +   IF +
Sbjct: 614 PLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNITFTSLLSACNHVGDINQAIEIFTD 673

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M   +G +P  EHY  MV+LL  AG  D A +L+++MP+KPDAR+   L+++C    ++E
Sbjct: 674 MVSKHGVKPCLEHYGLMVDLLASAGETDRALKLIEEMPYKPDARMIQSLVASCNKQHKSE 733

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L E  +  L+  EPEN+GNYV +SN YA  G W+ V KMR  ++ +GL K PGCSWI+I 
Sbjct: 734 LVEYFSRHLLESEPENSGNYVTISNAYAVEGSWDEVVKMRDMMKAKGLTKNPGCSWIQIK 793

Query: 684 --KLVHEFWAADQSHPQADAIYTILGIL 709
             + VH F A D++H + D I  I+ +L
Sbjct: 794 GEEGVHVFVANDKTHIRKDEIQRIIALL 821



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 267/524 (50%), Gaps = 19/524 (3%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           +P+S  Y   + +L K GE ++ L +  +M  +++    + Y  +++ C    D  +G++
Sbjct: 32  NPSSTSYFHRVSSLCKNGEIKEALSLVTKMDFRNLRIGPEIYGEILQGCVYERDLCTGKQ 91

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           IHA+++K G  +   + +   LV FY KCD        + Q  F  L+ R    W ++I 
Sbjct: 92  IHARILKNGDFYAGNEYIETKLVIFYAKCDA-----LEIAQVLFSKLRVRNVFSWAAIIG 146

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           +  + G  E +   F  M +E   F D+  + N+ ++   L+    GR VH   V +   
Sbjct: 147 VKCRIGLCEGALMGFVEM-LENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLE 205

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
             + V ++L  MY K   L+DA+ +FD++ +++ V WN ++  Y Q+G  +E++ LL  M
Sbjct: 206 DCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDM 265

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
            + G      T    +S+ + M  +  GKQ HA  + NG +    +  SL++ YC+   +
Sbjct: 266 RKDGVEPSRVTVSTCLSASANMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLI 325

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A  IFD +  K VV+W+ +I GYV      +A+ +   M+LE ++ D VT+  ++ A 
Sbjct: 326 EYAEMIFDRMFDKDVVTWNLLISGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAA 385

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
                L+  K +  Y ++  L S   + +     YAKCG I  A ++FD      KD+I 
Sbjct: 386 ARTKNLKFGKEVQCYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTV--EKDLIL 443

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN++++AYA+ G   +  +L+ +M+   V P++IT+  ++ + +  G V E + +F +M+
Sbjct: 444 WNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQ 503

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDA 606
            S G  P+   + +M+N + + G  +EA   ++ M     +P+A
Sbjct: 504 SS-GISPNLISWTTMMNGMVQNGCSEEAILFLRKMQDSGLRPNA 546


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 207/678 (30%), Positives = 365/678 (53%), Gaps = 24/678 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH  +    G    + +S+ ++  Y   G    +  +F ++  P+ + + TIL   S F
Sbjct: 97  QIHG-FSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTIL---SGF 152

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            + +  L    +M    +     TY   +  C     F+ G ++ + VVK G +S   VG
Sbjct: 153 DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVG 212

Query: 170 DALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGK-SEKSFELFKLMRME 227
           ++ +  Y +  G F   + +  +  FKD+ S WNSL+S   Q G    ++  +F+ M  E
Sbjct: 213 NSFITMYSR-SGSFRGARRVFDEMSFKDMIS-WNSLLSGLSQEGTFGFEAVVIFRDMMRE 270

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E D  +  +++ +      L+L R +H + +   +   L V   L+S YSK   LE  
Sbjct: 271 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 330

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K +F +MS+++ V W  MIS+        +++ + + M   G   +  T +  ++++   
Sbjct: 331 KSVFHQMSERNVVSWTTMISSN-----KDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCN 385

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           + I+ G ++H   ++ G   + SV NS I +Y + E L  A+K F+ +  + ++SW++MI
Sbjct: 386 EQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMI 445

Query: 408 KGYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            G+  +  S EAL++F     E +  E  F +++N +    +I +++  +  H + +KLG
Sbjct: 446 SGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNAIAFAEDI-SVKQGQRCHAHLLKLG 504

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           LNS   V++A+   YAK G I+ + ++F+E  +  K+   W S+ISAY+ HGD+     L
Sbjct: 505 LNSCPVVSSALLDMYAKRGNIDESEKVFNE--MSQKNQFVWTSIISAYSSHGDFETVMNL 562

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M + +V PDL+TFL +LTAC   G+V++G  IF  M E Y  EPS EHY+ MV++LG
Sbjct: 563 FHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLG 622

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG + EA EL+ ++P  P   +   +L +C++H   ++    AE  + M+PE +G+YV 
Sbjct: 623 RAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQ 682

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK-----LVHEFWAADQSHPQAD 700
           + NIYA   +W+  A++R  +R + + K  G SWI++G       +  F + D+SHP++D
Sbjct: 683 MYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSD 742

Query: 701 AIYTILGILELEI-MEGR 717
            IY ++ I+ LE+ +EG+
Sbjct: 743 EIYRMVEIIGLEMNLEGK 760



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 154/592 (26%), Positives = 272/592 (45%), Gaps = 54/592 (9%)

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
           +C  D   G +IH      GF SF  V +A++  Y K  G F+N   + +         W
Sbjct: 87  ACRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKA-GRFDNALCIFENLVDPDVVSW 145

Query: 202 NSLISLAVQNGKSEKSFELFKLMRME--GAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           N+++S     G  +    L  ++RM+  G  FD+ T    L   V  +   LG  +    
Sbjct: 146 NTILS-----GFDDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTV 200

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-FPKES 318
           V +    DL V  + ++MYS+  S   A+ +FD+MS KD + WN ++S   Q G F  E+
Sbjct: 201 VKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEA 260

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + +   M+R G   D  +  + +++     +++  +Q+H   ++ G +  + V N L+  
Sbjct: 261 VVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSR 320

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV---EVDF 435
           Y +C  L   + +F  +  + VVSW++MI          +A+ +F  M+ +GV   EV F
Sbjct: 321 YSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMRFDGVYPNEVTF 375

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           V +IN +     I   E +K +HG  +K G  S  SV  +    YAK   +E A + F  
Sbjct: 376 VGLINAVKCNEQIK--EGLK-IHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAF-- 430

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG--L 553
           E I  ++II+WN+MIS +A++G   +  K++     ++  P+  TF  +L A   A    
Sbjct: 431 EDITFREIISWNAMISGFAQNGFSHEALKMFLS-AAAETMPNEYTFGSVLNAIAFAEDIS 489

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V++G+     + +  G        ++++++  + G++DE+ ++  +M  K +  VW  ++
Sbjct: 490 VKQGQRCHAHLLK-LGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQK-NQFVWTSII 547

Query: 614 SACKMHSETELAELTAEKLISMEPEN-AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           SA   H + E       K+I    EN A + V   ++  A          R  + D+G  
Sbjct: 548 SAYSSHGDFETVMNLFHKMI---KENVAPDLVTFLSVLTACN--------RKGMVDKGY- 595

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
                   EI  ++ E +  + SH     +  +LG        GR + +EEL
Sbjct: 596 --------EIFNMMIEVYNLEPSHEHYSCMVDMLG------RAGRLKEAEEL 633


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 300/570 (52%), Gaps = 12/570 (2%)

Query: 150 GEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNSLI 205
           G  +HA++VK   DS     + + L+  Y K D     E   +  +    ++   W SLI
Sbjct: 25  GRVVHARIVKT-LDSPPPPFLANYLINMYSKLD---HPESARLVLRLTPARNVVSWTSLI 80

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
           S   QNG    +   F  MR EG   +  T     ++   L+    G+ +H +AV     
Sbjct: 81  SGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRI 140

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            D+ V  +   MY K    +DA+ LFD++ +++   WN  IS     G P+E++E  +  
Sbjct: 141 LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEF 200

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
            R     +  T  A +++ S   ++  G Q+H  VLR+G D  VSV N LID Y +C+ +
Sbjct: 201 RRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQI 260

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             +  IF  + TK  VSW S++  YV + +  +A  L+   + + VE     I ++L AC
Sbjct: 261 RSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSAC 320

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
             +  LE  + +H +++K  +     V +A+   Y KCGCIE + + FDE  +  K+++T
Sbjct: 321 AGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDE--MPEKNLVT 378

Query: 506 WNSMISAYAKHGDWSQCFKLYTQM--KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
            NS+I  YA  G       L+ +M  +     P+ +TF+ LL+AC  AG VE G  IF  
Sbjct: 379 RNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDS 438

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M+ +YG EP  EHY+ +V++LGRAG ++ A E +K MP +P   VWG L +AC+MH + +
Sbjct: 439 MRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQ 498

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L  L AE L  ++P+++GN+VLLSN +AAAG+W     +R  L+  G+KK  G SWI + 
Sbjct: 499 LGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVK 558

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEI 713
             VH F A D+SH     I T L  L  E+
Sbjct: 559 NQVHAFQAKDRSHILNKEIQTTLAKLRNEM 588



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 226/472 (47%), Gaps = 9/472 (1%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +HAR +          L++ LI+ Y+ L     ++ V     + N + + +++  L++ G
Sbjct: 28  VHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNG 87

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDV 168
            +   L+ + +M  + + P + T+P   ++ + L   ++G++IHA  VK G   D F  V
Sbjct: 88  HFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVF--V 145

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G +  + Y K     +  K   +   ++L++ WN+ IS +V +G+  ++ E F   R   
Sbjct: 146 GCSAFDMYCKTRLRDDARKLFDEIPERNLET-WNAFISNSVTDGRPREAIEAFIEFRRID 204

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +S T    L +  +   L LG  +H + + S F  D+SV   L+  Y K   +  ++
Sbjct: 205 GHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSE 264

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           ++F +M  K+ V W  +++AY Q+   +++  L +   +       F   + +S+ + M 
Sbjct: 265 IIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMA 324

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +E G+ +HA+ ++   +  + V ++L+DMY +C  +  + + FD +  K +V+ +S+I 
Sbjct: 325 GLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIG 384

Query: 409 GYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEH-VKYLHGYSMKLG 465
           GY    Q   AL LF EM   G     +++T +++L AC   GA+E+ +K         G
Sbjct: 385 GYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYG 444

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           +   +   + I     + G +E A E   +  I    I  W ++ +A   HG
Sbjct: 445 IEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT-ISVWGALQNACRMHG 495



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 178/366 (48%), Gaps = 4/366 (1%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           LL++ +   S+ LGR+VH   V + D      +   L++MYSKL   E A+++      +
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           + V W  +IS   Q+G    +L     M R G   + FT   A  ++++++    GKQ+H
Sbjct: 72  NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++ G    V V  S  DMYC+    + ARK+FD +  + + +W++ I   VT  +  
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EA+  F E +      + +T    L AC +   L     LHG  ++ G ++  SV   + 
Sbjct: 192 EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLI 251

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y KC  I  +  +F E  + +K+ ++W S+++AY ++ +  +   LY + ++  V   
Sbjct: 252 DFYGKCKQIRSSEIIFTE--MGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETS 309

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
                 +L+AC     +E GR I     ++   E +    +++V++ G+ G ++++ +  
Sbjct: 310 DFMISSVLSACAGMAGLELGRSIHAHAVKAC-VERTIFVGSALVDMYGKCGCIEDSEQAF 368

Query: 598 KDMPFK 603
            +MP K
Sbjct: 369 DEMPEK 374



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 10/353 (2%)

Query: 12  QSGH-----VKFLRFPANQTRPH-MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNL 65
           Q+GH     V+F         P+  T   +F  +     P   +QIHA   +  G   ++
Sbjct: 85  QNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHA-LAVKCGRILDV 143

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            +  +  D Y    L   ++++F+ I   N   +   + N    G   + +  + +    
Sbjct: 144 FVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRI 203

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
             +P   T+   + +CS  L    G ++H  V++ GFD+   V + L++FY KC     +
Sbjct: 204 DGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSS 263

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
           E    +   K+  S W SL++  VQN + EK+  L+   R +  E     + ++L +   
Sbjct: 264 EIIFTEMGTKNAVS-WCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAG 322

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +  LELGR +H  AV +   + + V +AL+ MY K   +ED++  FD+M +K+ V  N +
Sbjct: 323 MAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSL 382

Query: 306 ISAYYQSGFPKESLELL--MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           I  Y   G    +L L   M     G   +  T ++ +S+ S    +E G ++
Sbjct: 383 IGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 435



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 17/294 (5%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           + LN C +  HL    Q+H   ++  G   ++ + + LID Y     +  S+ +F  + +
Sbjct: 214 AFLNACSDWLHLNLGMQLHG-LVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGT 272

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS----CSCLLDFIS 149
            N++ + +++    +  E EK  ++Y    L+S     +T  F+I S    C+ +     
Sbjct: 273 KNAVSWCSLVAAYVQNHEDEKASVLY----LRSRKDIVETSDFMISSVLSACAGMAGLEL 328

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G  IHA  VK   +    VG ALV+ Y KC    ++E+   +   K+L +R NSLI    
Sbjct: 329 GRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTR-NSLIGGYA 387

Query: 210 QNGKSEKSFELFKLM--RMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCK 266
             G+ + +  LF+ M  R  G   +  T ++LL +     ++E G +I   +        
Sbjct: 388 HQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEP 447

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISAYYQSGFPKESL 319
                + ++ M  +   +E A     KM  +  + VW  + +A    G P+  L
Sbjct: 448 GAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGL 501


>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
 gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
          Length = 849

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 209/690 (30%), Positives = 354/690 (51%), Gaps = 7/690 (1%)

Query: 4   LLPPACSLQSGHVKFLRFP-ANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLH 62
           L PP  S +    K       NQ    +      SLL    +   L+ I A         
Sbjct: 54  LAPPTLSDEDVKQKLASLEEQNQKSGFVDPAAYVSLLKQSGDVTALKTIQAHISHSKRFA 113

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
            + +L + ++++Y   G +  ++ VF+SI  PN   +  +L   ++ G ++  L + +QM
Sbjct: 114 GDRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQM 173

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDG 181
            L  ++P   T   VI + S L ++    KIHA+       ++D V   AL++ Y KC  
Sbjct: 174 DLLGVWPNAVTLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGD 233

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            F  E    Q + KDL    N++IS  +Q G +  +   F  ++  G + +  T   L R
Sbjct: 234 IFHAEVVFDQARNKDLAC-CNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFR 292

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
           +          R+ H   ++S    D+ VNTAL+SMYS+  SLEDA+ +FD+M  K+ V 
Sbjct: 293 ACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVT 352

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN+MI+ Y Q G+  E+L+L + M  +G   D  T +  + S S  +++  G+ +H +V+
Sbjct: 353 WNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVV 412

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEA 419
             G D  ++V ++LI MY  C  L  A  +F    T   +V+SW++M+     + +   A
Sbjct: 413 DAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSA 472

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF +M LEGV  + VT ++ + AC +IGAL     +    +  G      + T++   
Sbjct: 473 LALFRKMDLEGVRANVVTFVSTIDACSSIGALVEGHAIFERVIVTGHLIDVVLGTSLINL 532

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KCG ++ A E+F    +  K+I+TWN++++A +++G+ +   +L  +M     +P+ +
Sbjct: 533 YGKCGRLDYALEVF--HYLSFKNIVTWNTILAASSQNGEETLSDELLQEMDLDGAQPNEM 590

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T L +L  C + GLV +    F+ M   +   P+ EHY  +V+LLGR+G ++E    +  
Sbjct: 591 TLLNMLFGCSHNGLVAKAVSYFRSMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISS 650

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
            PF  D+ +W  LL +C +HS+ E     A +++ ++P+NA  YVLLSN++AA G  + V
Sbjct: 651 KPFSLDSVLWMSLLGSCVIHSDVERGLRAARRVLGLDPKNASPYVLLSNMFAAIGMLDAV 710

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
             +     +R +KK    S+IE+  +VHEF
Sbjct: 711 KSLAKLAGERAMKKEQSRSYIEVNGVVHEF 740


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 163/465 (35%), Positives = 277/465 (59%), Gaps = 3/465 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
            LL+     K L  GRIVH   + S F  D+ +   LL+MY+K  SLE+A+ +F+KM  +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +IS Y Q   P ++L     M+R G+  + FT  + + + +  +    G Q+H
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
              ++ G D  V V ++L+D+Y     ++ A+ +FD+++++  VSW+++I G+     + 
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +AL LF  M  +G      +  ++  AC + G LE  K++H Y +K G   ++     + 
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G I  A ++FD  ++  +D+++WNS+++AYA+HG   +    + +M++  +RP+
Sbjct: 305 DMYAKSGSIHDARKIFD--RLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            I+FL +LTAC ++GL++EG   ++ MK+  G  P   HY ++V+LLGRAG ++ A   +
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           ++MP +P A +W  LL+AC+MH  TEL    AE +  ++P++ G +V+L NIYA+ G+WN
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
             A++R  +++ G+KK P CSW+EI   +H F A D+ HPQ + I
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 214/446 (47%), Gaps = 10/446 (2%)

Query: 126 SMYPAEDT-YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           S  PA+   Y  +++ C+     I G  +HA +++  F     +G+ L+  Y KC G  E
Sbjct: 54  SYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-GSLE 112

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
             + + ++  +     W +LIS   Q+ +   +   F  M   G   +  TL +++++  
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
             +    G  +H   V   F  ++ V +ALL +Y++   ++DA+++FD +  ++ V WN 
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I+ + +    +++LEL   M+R GFR   F+  +   + S+   +E GK +HA ++++G
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                   N+L+DMY +   ++ ARKIFD +  + VVSW+S++  Y  H    EA+  F 
Sbjct: 293 EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EM+  G+  + ++ +++L AC + G L+   + +    K G+   +     +     + G
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAG 412

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD---WSQCFKLYTQMKQSDVRPDLITF 541
            +  A    +E  I+    I W ++++A   H +    +   +   ++   D  P +I  
Sbjct: 413 DLNRALRFIEEMPIEPTAAI-WKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI-- 469

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKES 567
             L     + G   +   + K+MKES
Sbjct: 470 --LYNIYASGGRWNDAARVRKKMKES 493



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 200/430 (46%), Gaps = 26/430 (6%)

Query: 7   PACSLQSGHVKFLRFPANQ----------TRPHMTATHSF--SLLNLCENPQHLQQ---I 51
           PA   +    + L+FP+N              ++ A   F  +LL  C   + L Q   +
Sbjct: 23  PAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIV 82

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           HA +I+      ++++ + L++ YA  G L  +++VF  +   + + + T++   S+   
Sbjct: 83  HA-HILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDR 141

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
               LL + QM      P E T   VI++ +       G ++H   VK GFDS   VG A
Sbjct: 142 PCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSA 201

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRME 227
           L++ Y +   G  ++  ++   F  L+SR    WN+LI+   +   +EK+ ELF+ M  +
Sbjct: 202 LLDLYTRY--GLMDDAQLV---FDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD 256

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G      +  +L  +      LE G+ VH   + S           LL MY+K  S+ DA
Sbjct: 257 GFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDA 316

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +FD+++ +D V WN +++AY Q GF KE++     M R G R +  + ++ +++ S  
Sbjct: 317 RKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHS 376

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSM 406
             ++ G   +  + ++G   +   + +++D+     DLN A +  + +  + T   W ++
Sbjct: 377 GLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKAL 436

Query: 407 IKGYVTHDQS 416
           +     H  +
Sbjct: 437 LNACRMHKNT 446


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 207/678 (30%), Positives = 365/678 (53%), Gaps = 24/678 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH  +    G    + +S+ ++  Y   G    +  +F ++  P+ + + TIL   S F
Sbjct: 22  QIHG-FSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTIL---SGF 77

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            + +  L    +M    +     TY   +  C     F+ G ++ + VVK G +S   VG
Sbjct: 78  DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVG 137

Query: 170 DALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGK-SEKSFELFKLMRME 227
           ++ +  Y +  G F   + +  +  FKD+ S WNSL+S   Q G    ++  +F+ M  E
Sbjct: 138 NSFITMYSR-SGSFRGARRVFDEMSFKDMIS-WNSLLSGLSQEGTFGFEAVVIFRDMMRE 195

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E D  +  +++ +      L+L R +H + +   +   L V   L+S YSK   LE  
Sbjct: 196 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 255

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K +F +MS+++ V W  MIS+        +++ + + M   G   +  T +  ++++   
Sbjct: 256 KSVFHQMSERNVVSWTTMISSN-----KDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCN 310

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           + I+ G ++H   ++ G   + SV NS I +Y + E L  A+K F+ +  + ++SW++MI
Sbjct: 311 EQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMI 370

Query: 408 KGYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            G+  +  S EAL++F     E +  E  F +++N +    +I +++  +  H + +KLG
Sbjct: 371 SGFAQNGFSHEALKMFLSAAAETMPNEYTFGSVLNAIAFAEDI-SVKQGQRCHAHLLKLG 429

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           LNS   V++A+   YAK G I+ + ++F+E  +  K+   W S+ISAY+ HGD+     L
Sbjct: 430 LNSCPVVSSALLDMYAKRGNIDESEKVFNE--MSQKNQFVWTSIISAYSSHGDFETVMNL 487

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M + +V PDL+TFL +LTAC   G+V++G  IF  M E Y  EPS EHY+ MV++LG
Sbjct: 488 FHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLG 547

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG + EA EL+ ++P  P   +   +L +C++H   ++    AE  + M+PE +G+YV 
Sbjct: 548 RAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQ 607

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK-----LVHEFWAADQSHPQAD 700
           + NIYA   +W+  A++R  +R + + K  G SWI++G       +  F + D+SHP++D
Sbjct: 608 MYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSD 667

Query: 701 AIYTILGILELEI-MEGR 717
            IY ++ I+ LE+ +EG+
Sbjct: 668 EIYRMVEIIGLEMNLEGK 685



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 154/592 (26%), Positives = 272/592 (45%), Gaps = 54/592 (9%)

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
           +C  D   G +IH      GF SF  V +A++  Y K  G F+N   + +         W
Sbjct: 12  ACRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKA-GRFDNALCIFENLVDPDVVSW 70

Query: 202 NSLISLAVQNGKSEKSFELFKLMRME--GAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           N+++S     G  +    L  ++RM+  G  FD+ T    L   V  +   LG  +    
Sbjct: 71  NTILS-----GFDDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTV 125

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-FPKES 318
           V +    DL V  + ++MYS+  S   A+ +FD+MS KD + WN ++S   Q G F  E+
Sbjct: 126 VKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEA 185

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + +   M+R G   D  +  + +++     +++  +Q+H   ++ G +  + V N L+  
Sbjct: 186 VVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSR 245

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV---EVDF 435
           Y +C  L   + +F  +  + VVSW++MI          +A+ +F  M+ +GV   EV F
Sbjct: 246 YSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMRFDGVYPNEVTF 300

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           V +IN +     I   E +K +HG  +K G  S  SV  +    YAK   +E A + F  
Sbjct: 301 VGLINAVKCNEQIK--EGLK-IHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAF-- 355

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG--L 553
           E I  ++II+WN+MIS +A++G   +  K++     ++  P+  TF  +L A   A    
Sbjct: 356 EDITFREIISWNAMISGFAQNGFSHEALKMFLS-AAAETMPNEYTFGSVLNAIAFAEDIS 414

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           V++G+     + +  G        ++++++  + G++DE+ ++  +M  K +  VW  ++
Sbjct: 415 VKQGQRCHAHLLK-LGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQK-NQFVWTSII 472

Query: 614 SACKMHSETELAELTAEKLISMEPEN-AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           SA   H + E       K+I    EN A + V   ++  A          R  + D+G  
Sbjct: 473 SAYSSHGDFETVMNLFHKMI---KENVAPDLVTFLSVLTACN--------RKGMVDKGY- 520

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEEL 724
                   EI  ++ E +  + SH     +  +LG        GR + +EEL
Sbjct: 521 --------EIFNMMIEVYNLEPSHEHYSCMVDMLG------RAGRLKEAEEL 558



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           +D VT+   L AC   G L+    +HG+S   G  S   V+ A+   Y K G  + A  +
Sbjct: 1   MDEVTLCLALKACR--GDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 58

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E +   D+++WN+++S +    D         +MK + V  D  T+   L+ CV + 
Sbjct: 59  F--ENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGS- 112

Query: 553 LVEEGRIIFKEMKESY---GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
              EG ++  +++ +    G E       S + +  R+G    AR +  +M FK D   W
Sbjct: 113 ---EGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFK-DMISW 168

Query: 610 GPLLSA 615
             LLS 
Sbjct: 169 NSLLSG 174


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/638 (30%), Positives = 337/638 (52%), Gaps = 11/638 (1%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  ++Q+F+ +   N + + +++   ++ G YE+ + ++ +    ++   + TY   +  
Sbjct: 98  LGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGF 157

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR 200
           C    D   GE +H  VV  G      + + L++ Y KC G  +    +  R  +  +  
Sbjct: 158 CGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKC-GKLDQAMSLFDRCDERDQVS 216

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST-VELKS--LELGRIVHC 257
           WNSLIS  V+ G +E+   L   M  +G    +  L ++L++  + L    +E G  +HC
Sbjct: 217 WNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHC 276

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ-----S 312
                    D+ V TALL MY+K  SL++A  LF  M  K+ V +N MIS + Q      
Sbjct: 277 YTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITD 336

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
               E+ +L M M R G      T    + + S  K +E+G+Q+HA + +N       + 
Sbjct: 337 EASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIG 396

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           ++LI++Y          + F S   + + SW+SMI  +V ++Q   A  LF ++    + 
Sbjct: 397 SALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIR 456

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            +  T+  ++ AC +  AL   + + GY++K G+++ +SV T+    YAK G + +A ++
Sbjct: 457 PEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQV 516

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F E  + + D+ T+++MIS+ A+HG  ++   ++  MK   ++P+   FLG+L AC + G
Sbjct: 517 FIE--VQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGG 574

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
           LV +G   F+ MK  Y   P+++H+  +V+LLGR G + +A  L+    F+     W  L
Sbjct: 575 LVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRAL 634

Query: 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672
           LS+C+++ ++ + +  AE+L+ +EPE +G+YVLL NIY  +G  +   ++R  +RDRG+K
Sbjct: 635 LSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVK 694

Query: 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILE 710
           K P  SWI IG   H F  AD SHP +  IYT+L  ++
Sbjct: 695 KEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLETMD 732



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 178/330 (53%), Gaps = 10/330 (3%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           L ++  +  S+ LG++ H   + S     L +   LL+MY K   L  A+ LFD+M +++
Sbjct: 53  LFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERN 112

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            + +N +IS Y Q GF ++++EL +    +  + D FT   A+       +++ G+ +H 
Sbjct: 113 IISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHG 172

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            V+ NG   QV + N LIDMY +C  L+ A  +FD    +  VSW+S+I GYV    + E
Sbjct: 173 LVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEE 232

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPAC---VNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            L L ++M  +G+ +    + ++L AC   +N G +E    +H Y+ KLG+     V TA
Sbjct: 233 PLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTA 292

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW-----SQCFKLYTQMK 530
           +   YAK G ++ A +LF    + SK+++T+N+MIS + +  +      S+ FKL+  M+
Sbjct: 293 LLDMYAKNGSLKEAIKLF--SLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQ 350

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +  + P   TF  +L AC  A  +E GR I
Sbjct: 351 RRGLEPSPSTFSVVLKACSAAKTLEYGRQI 380


>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Glycine max]
          Length = 714

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 194/621 (31%), Positives = 326/621 (52%), Gaps = 10/621 (1%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
            + QI  + ++  G+ Q L +++ LID Y  LG  + ++Q+F  + S + + +  ++   
Sbjct: 61  QVNQIQTQ-LLKRGIDQFLYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGY 119

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           S+ G     L ++  M  +S  P + T   ++ SC     F+ G  +HA  +K G     
Sbjct: 120 SQHGHPHDALQLFVHMLRESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDP 179

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            + +AL   Y KCD   E  + + Q   +     WN++I    QNG  +K+   FK M  
Sbjct: 180 QLSNALTSMYAKCDD-LEASQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLK 238

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG +    T++NL+ +        +   VHC  +   F  D SV T+L+ +Y+K    + 
Sbjct: 239 EGWQPSPVTMMNLMSANA------VPETVHCYIIKCGFTGDASVVTSLVCLYAKQGFTDM 292

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           AK+L++    KD +    +IS+Y + G  + ++E  +  ++   + D    I+ +  IS 
Sbjct: 293 AKLLYECYPTKDLISLTGIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISD 352

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
             +   G   H   L+NG      V N LI  Y   +++  A  +F     K +++W+SM
Sbjct: 353 PSHFAIGCAFHGYGLKNGLTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWNSM 412

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I G V   +S +A+ LF +M + G + D +TI ++L  C  +G L   + LHGY ++  +
Sbjct: 413 ISGCVQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRNNV 472

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                  TA+   Y KCG ++ A ++F    I+   ++TWNS+IS Y+ +G   + F  +
Sbjct: 473 KVEDFTGTALIDMYTKCGRLDYAEKIF--YSINDPCLVTWNSIISGYSLYGLEHKAFGCF 530

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
           +++++  + PD ITFLG+L AC + GLV  G   F+ M++ YG  P+ +HYA +V LLGR
Sbjct: 531 SKLQEQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMRKEYGLMPTLQHYACIVGLLGR 590

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG   EA E++ +M  +PD+ VWG LLSAC +  E +L E  A+ L  +  +N G YV L
Sbjct: 591 AGLFKEAIEIINNMEIRPDSAVWGALLSACWIQQEVKLGECLAKNLFLLNYKNGGFYVSL 650

Query: 647 SNIYAAAGKWNGVAKMRTFLR 667
           SN+YA  G+W+ VA++R  +R
Sbjct: 651 SNLYAIVGRWDDVARVRDMMR 671



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/583 (24%), Positives = 259/583 (44%), Gaps = 30/583 (5%)

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD---------FISGEKIHAQV 157
           S F +    LL+++Q+   S  P   T+  +I++C              ++   +I  Q+
Sbjct: 10  SLFHDASSALLIFRQLLQSSANPNHLTFSLLIKACLSSSSSFSRGSPTAWLQVNQIQTQL 69

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGK 213
           +K G D F  V  AL++FY+K   GF       ++ F+DL S     WN LI    Q+G 
Sbjct: 70  LKRGIDQFLYVNTALIDFYMKL--GFTTHA---RQLFEDLPSADVVSWNVLICGYSQHGH 124

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
              + +LF  M  E    +  T+ +LL S    +    GR VH   + +    D  ++ A
Sbjct: 125 PHDALQLFVHMLRESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNA 184

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L SMY+K   LE +++LF +M +K+ + WN MI AY Q+GF  +++     M++ G++  
Sbjct: 185 LTSMYAKCDDLEASQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPS 244

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T +  +S+ +  + +      H  +++ G     SV  SL+ +Y +    + A+ +++
Sbjct: 245 PVTMMNLMSANAVPETV------HCYIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYE 298

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
              TK ++S + +I  Y    +   A+  F +     ++ D V +I++L    +      
Sbjct: 299 CYPTKDLISLTGIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAI 358

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
               HGY +K GL +   V   +   Y++   I  A  LF +     K +ITWNSMIS  
Sbjct: 359 GCAFHGYGLKNGLTNDCLVANGLISFYSRFDEILAALSLFFDRS--EKPLITWNSMISGC 416

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
            + G  S   +L+ QM     +PD IT   LL+ C   G +  G  +   +  +   +  
Sbjct: 417 VQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRN-NVKVE 475

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL- 632
                +++++  + G +D A ++   +   P    W  ++S   ++     A     KL 
Sbjct: 476 DFTGTALIDMYTKCGRLDYAEKIFYSIN-DPCLVTWNSIISGYSLYGLEHKAFGCFSKLQ 534

Query: 633 -ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
              +EP+      +L+        + G+   R   ++ GL  T
Sbjct: 535 EQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMRKEYGLMPT 577



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 137/309 (44%), Gaps = 2/309 (0%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +++NL       + +H  YII  G   +  + ++L+  YA  G   +++ ++    + + 
Sbjct: 247 TMMNLMSANAVPETVHC-YIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYPTKDL 305

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
           +    I+ + S+ GE E  +  + Q     + P       V+   S    F  G   H  
Sbjct: 306 ISLTGIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGY 365

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
            +K G  +   V + L+ FY + D           R  K L + WNS+IS  VQ GKS  
Sbjct: 366 GLKNGLTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLIT-WNSMISGCVQAGKSSD 424

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           + ELF  M M G + D+ T+ +LL    +L  L +G  +H   + ++   +    TAL+ 
Sbjct: 425 AMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALID 484

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY+K   L+ A+ +F  ++D   V WN +IS Y   G   ++      +   G   D  T
Sbjct: 485 MYTKCGRLDYAEKIFYSINDPCLVTWNSIISGYSLYGLEHKAFGCFSKLQEQGLEPDKIT 544

Query: 337 AIAAVSSIS 345
            +  +++ +
Sbjct: 545 FLGVLAACT 553


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 207/675 (30%), Positives = 332/675 (49%), Gaps = 96/675 (14%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC-------------- 179
           +  ++++   + D  +G  +H Q++K G      + + L+ FY K               
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 180 ----------------DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
                            G FE  + ++          W ++I    Q G  + +  +F  
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVH----------CVAVVSDF--------- 264
           M  E       T+ N+L S    ++L++GR +H          CV V +           
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 265 ------------CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
                        K++S   AL+S+Y +    E A   F+KM D+D V WN MIS Y Q 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 313 GFPKESLELLMCMV-RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           G+  E+L +   M+     + D FT  + +S+ + ++ +  GKQ+HA +LR  ++   +V
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 372 HNSLIDMYCE---------------CEDLNC------------------ARKIFDSVKTK 398
            N+LI MY +                 +LN                   AR+IF+ ++ +
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VV+W++MI GYV +    +AL LF  M  EG E +  T+  +L    ++  LEH K +H
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             ++K G +S  SV  A+   YAK G I +A  +FD      K+I++W SMI A A+HG 
Sbjct: 433 ASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPN-GKKEIVSWTSMIMALAQHGL 491

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
             +   L+ +M    ++PD IT++G+L+AC + GLVE+GR  +  M E +  EP+  HYA
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYA 551

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
            M++L GRAG + EA   ++ MP +PD   WG LL++CK+H   +LA++ AE+L+ ++P 
Sbjct: 552 CMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPG 611

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698
           N+G Y+ L+N+Y+A GKW   A+ R  ++DRG++K  G SWI I   VH F   D  HPQ
Sbjct: 612 NSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQ 671

Query: 699 ADAIYTILGILELEI 713
            D IY ++  +  EI
Sbjct: 672 KDEIYKLMAEIWEEI 686



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 156/577 (27%), Positives = 260/577 (45%), Gaps = 107/577 (18%)

Query: 43  ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-----SITSPNSL 97
           ++P   + +H + II  GLH  + L +NL+  YA  G L  +  VF+     S  S N+L
Sbjct: 24  KDPFAGRSVHCQ-IIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTL 82

Query: 98  LYG--------------------------TILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
           + G                           I+   ++FG ++  + ++ +M  + + P++
Sbjct: 83  ISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQ 142

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
            T   V+ SC+       G KIH+ VVKLG  S   V  +L+  Y KC G     K +  
Sbjct: 143 FTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKC-GDPVIAKVVFD 201

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELF------------------------------ 221
           R      S WN+LISL +Q+G+ E +   F                              
Sbjct: 202 RMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVI 261

Query: 222 --KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCV--------------AVVSDFC 265
             K++     + D+ TL ++L +   L+ L +G+ +H                A++S + 
Sbjct: 262 FSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYA 321

Query: 266 KDLSVN-------------------TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           K   V                    T+LL  Y+KL +++ A+ +F+K+ D+D V W  MI
Sbjct: 322 KSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMI 381

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
             Y Q+G   ++LEL   MV  G   + +T  A +S  S++  +E GKQ+HA+ ++ G  
Sbjct: 382 VGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES 441

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              SV N+LI MY +  ++N A+++FD     K +VSW+SMI     H    EA+ LF  
Sbjct: 442 STPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFER 501

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSV--NTAIFIS-YA 481
           M   G++ D +T + +L AC ++G +E   KY   Y+M   ++ +     + A  I  Y 
Sbjct: 502 MLSVGMKPDHITYVGVLSACTHVGLVEQGRKY---YNMMTEVHEIEPTLSHYACMIDLYG 558

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           + G ++ A  LF E      D I W S++++   H +
Sbjct: 559 RAGLLQEA-YLFIESMPIEPDNIAWGSLLASCKIHKN 594



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 214/481 (44%), Gaps = 66/481 (13%)

Query: 23  ANQTRPHMTATHSF--------------SLLNL---CENPQHLQQIHARYIILHGLHQNL 65
           ANQT       HSF              SLLN+   C +P   + +  R  +     +N+
Sbjct: 154 ANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTV-----KNI 208

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
              + LI  Y   G   L+   F  +   + + + +++   S+ G   + L+++ +M  +
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 126 -SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
            S+ P   T   ++ +C+ L     G++IHA +++   ++   VG+AL+  Y K  GG E
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAK-SGGVE 327

Query: 185 NEKGMIQRK-----------------------------FKDLKSR----WNSLISLAVQN 211
             + +++                               F  L+ R    W ++I   VQN
Sbjct: 328 IARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQN 387

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G    + ELF+LM  EG E +S TL  +L  +  L  LE G+ +H  A+ +      SV 
Sbjct: 388 GLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGF 330
            AL++MY+K  ++  AK +FD  + K  +V W  MI A  Q G  KE++ L   M+  G 
Sbjct: 448 NALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ--VSVHNSLIDMYCECEDLNCA 388
           + D  T +  +S+ + +  +E G++ + N++    + +  +S +  +ID+Y     L  A
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYY-NMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 389 RKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKL---EGVEVDFVTIINILPA 444
               +S+  +   ++W S++     H  + +  ++ +E  L    G    ++ + N+  A
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNA-DLAKVAAERLLLIDPGNSGAYLALANVYSA 625

Query: 445 C 445
           C
Sbjct: 626 C 626


>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39952, mitochondrial; Flags: Precursor
 gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 775

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 205/631 (32%), Positives = 334/631 (52%), Gaps = 11/631 (1%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +H   +   G  +N  + ++ +  Y+  G L  +  VF+ +   + + +  I+    + G
Sbjct: 147 VHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNG 206

Query: 111 EYEKTLLVYKQMALQSM---YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
           E E  L    +M         P   T     ++CS L     G  +H   VK G  S   
Sbjct: 207 ESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKF 266

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRM 226
           V  ++  FY K   G  +E  +  R+  D     W S+I+   ++G  E+SF++F  M+ 
Sbjct: 267 VQSSMFSFYSK--SGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQN 324

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           +G   D   +  L+    ++  +  G+  H   +   F  D +V  +LLSMY K   L  
Sbjct: 325 KGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSV 384

Query: 287 AKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           A+ LF ++S++ ++  WN M+  Y +     + +EL   +   G   D  +A + +SS S
Sbjct: 385 AEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCS 444

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            +  +  GK +H  V++   D  +SV NSLID+Y +  DL  A ++F    T  V++W++
Sbjct: 445 HIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT-NVITWNA 503

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI  YV  +QS +A+ LF  M  E  +   +T++ +L ACVN G+LE  + +H Y  +  
Sbjct: 504 MIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETE 563

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
                S++ A+   YAKCG +E + ELFD    + KD + WN MIS Y  HGD      L
Sbjct: 564 HEMNLSLSAALIDMYAKCGHLEKSRELFDAG--NQKDAVCWNVMISGYGMHGDVESAIAL 621

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + QM++SDV+P   TFL LL+AC +AGLVE+G+ +F +M + Y  +P+ +HY+ +V+LL 
Sbjct: 622 FDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQ-YDVKPNLKHYSCLVDLLS 680

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           R+G+++EA   V  MPF PD  +WG LLS+C  H E E+    AE+ ++ +P+N G Y++
Sbjct: 681 RSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIM 740

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           L+N+Y+AAGKW    + R  +R+ G+ K  G
Sbjct: 741 LANMYSAAGKWEEAERAREMMRESGVGKRAG 771



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 179/596 (30%), Positives = 309/596 (51%), Gaps = 21/596 (3%)

Query: 41  LCENPQHLQQI--HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           LC+    L+ +  H   II  GL +N+ ++S LI SYA+ G  +LS +VF+ +T  +  L
Sbjct: 33  LCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFL 92

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +I+K     G+Y ++L  +  M L    P   T P V+ +C+ LL F  G  +H  V+
Sbjct: 93  WNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVL 152

Query: 159 KL-GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGK 213
           K  GFD    VG + V FY KC  GF  +  ++   F ++  R    W ++IS  VQNG+
Sbjct: 153 KHGGFDRNTAVGASFVYFYSKC--GFLQDACLV---FDEMPDRDVVAWTAIISGHVQNGE 207

Query: 214 SEKSFELFKLMRMEGAEFDSG---TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
           SE        M   G++ D     TL    ++   L +L+ GR +H  AV +       V
Sbjct: 208 SEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFV 267

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            +++ S YSK  +  +A + F ++ D+D   W  +I++  +SG  +ES ++   M   G 
Sbjct: 268 QSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGM 327

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D       ++ +  M  +  GK  H  V+R+      +V NSL+ MYC+ E L+ A K
Sbjct: 328 HPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEK 387

Query: 391 IFDSVKTK-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           +F  +  +    +W++M+KGY      ++ + LF +++  G+E+D  +  +++ +C +IG
Sbjct: 388 LFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIG 447

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           A+   K LH Y +K  L+   SV  ++   Y K G + +A  +F E      ++ITWN+M
Sbjct: 448 AVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEAD---TNVITWNAM 504

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           I++Y       +   L+ +M   + +P  IT + LL ACVN G +E G++I + + E+  
Sbjct: 505 IASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETE- 563

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +E +    A+++++  + GH++++REL  D   + DA  W  ++S   MH + E A
Sbjct: 564 HEMNLSLSAALIDMYAKCGHLEKSRELF-DAGNQKDAVCWNVMISGYGMHGDVESA 618



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL  C N   L   Q IH RYI       NL LS+ LID YA  G L  S+++F++   
Sbjct: 538 TLLMACVNTGSLERGQMIH-RYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQ 596

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            +++ +  ++      G+ E  + ++ QM    + P   T+  ++ +C+       G+K+
Sbjct: 597 KDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKL 656

Query: 154 ----HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
               H   VK     +      LV+   +     E E  ++   F      W +L+S  +
Sbjct: 657 FLKMHQYDVKPNLKHY----SCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCM 712

Query: 210 QNGKSEKSFEL 220
            +G+ E    +
Sbjct: 713 THGEFEMGIRM 723


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 204/642 (31%), Positives = 338/642 (52%), Gaps = 15/642 (2%)

Query: 51  IHA---RYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           +HA   RY +L     ++ + S+L+  YA  G++  + ++F  +   + + +  ++    
Sbjct: 132 VHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCV 191

Query: 108 KFGEYEKTLLVYKQMALQS----MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
           + GE    L    +M   +      P   T    + +C  L +  SG  +H   VK+G  
Sbjct: 192 RNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVG 251

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  AL   Y KC    +      +   KD+ S W SLI +    G   ++ ELF+ 
Sbjct: 252 DSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVS-WTSLIGIYCWRGLIREAMELFQE 310

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   G + D   +  LL       ++  G+  H V +  +F  ++ V  AL+SMY K   
Sbjct: 311 MMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFEL 370

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG---FRADLFTAIAA 340
           +++A  +F  +  +D   WN+MI  Y ++G   + LEL   M       F  D  + ++A
Sbjct: 371 VDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSA 430

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT- 399
           +SS S +  +  G+  H   +++  D   SV N LI MY  C   + A KIF   K K  
Sbjct: 431 ISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGD 490

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           VV+W+++I  Y     S  A+ L+ +M  EG+  +  T+I ++ AC N+ ALE  + +H 
Sbjct: 491 VVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHS 550

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           Y  ++G +   S+NTA+   YAKCG +  A  +FD   +   D++ WN MIS Y  HG+ 
Sbjct: 551 YVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFD--SMLQHDVVAWNVMISGYGMHGEA 608

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            Q  +L+ +M+   ++P+ +TFL +L+AC ++GL+EEGR +F  M + Y  EP+ +HYA 
Sbjct: 609 KQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGK-YSLEPNLKHYAC 667

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           MV+LLG++GH+ EA ++V  MP +PD  +WG LLSACK+H + E+    A+K  + + EN
Sbjct: 668 MVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASDAEN 727

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            G Y+L+SN Y +A KW+ + K+R  +++ G++K  G S ++
Sbjct: 728 EGYYILISNSYGSAKKWDEIEKLREAMKNHGVQKGAGWSAVD 769



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 159/596 (26%), Positives = 286/596 (47%), Gaps = 30/596 (5%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L ++HA   +  GL Q   + + L+ +Y++ G   L+   F++   P++ L+ ++++   
Sbjct: 28  LLRVHA-LAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHH 86

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
              ++   L  +++M   S  P+  T P    + + L     G  +HA  V+ G  + D 
Sbjct: 87  CASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDG 146

Query: 168 ----VGDALVEFYIKCDGGFENEKGMIQ---RKFKDLKSR----WNSLISLAVQNGKSEK 216
               V  +LV  Y +C        G+++   + F++++ R    W +++S  V+NG+   
Sbjct: 147 GSVAVPSSLVYMYARC--------GVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGD 198

Query: 217 SFE-LFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
               L +++R+ G   A  +S T+ + L +   L  L  GR +H  AV         V +
Sbjct: 199 GLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVIS 258

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL SMYSK  S EDA  LF ++ +KD V W  +I  Y   G  +E++EL   M+ SG + 
Sbjct: 259 ALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQP 318

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D       +S +    N+  GK  HA +++      V V N+LI MY + E ++ A ++F
Sbjct: 319 DDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVF 378

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE---VDFVTIINILPACVNIG 449
             +  +   SW+ MI GY      ++ L L+ EM+         D  ++++ + +C  + 
Sbjct: 379 RLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLV 438

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L   +  H YS+K  L+  SSV   +   Y +CG  + A ++F   K+   D++TWN++
Sbjct: 439 ELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKG-DVVTWNTL 497

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           IS+YA  G  +    LY QM    + P+  T + +++AC N   +E G  I   +KE  G
Sbjct: 498 ISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKE-MG 556

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           ++       +++++  + G +  AR +   M  + D   W  ++S   MH E + A
Sbjct: 557 WDYDVSINTALIDMYAKCGQLGTARRIFDSM-LQHDVVAWNVMISGYGMHGEAKQA 611


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 201/667 (30%), Positives = 344/667 (51%), Gaps = 8/667 (1%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +II +G   ++ ++++LI  +++   +  +  VF+ +   + + +  ++   +  G   +
Sbjct: 322 HIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRE 381

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
           +L  +  M          T   ++  CS + +   G  IH  VVKLG DS   + + L+ 
Sbjct: 382 SLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLT 441

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y +     + E        +DL S WNS+++  VQ+GK     ++   +   G   +  
Sbjct: 442 LYSEAGRSEDAELVFQAMTERDLIS-WNSMMACYVQDGKCLDGLKILAELLQMGKVMNHV 500

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T  + L +    + L   +IVH + +V+ F   L V  AL++MY KL  + +AK +   M
Sbjct: 501 TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 560

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWG 353
              DRV WN +I  + ++  P E+++    +   G  A+  T ++ + + S   ++ + G
Sbjct: 561 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 620

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
             +HA+++  G +    V NSLI MY +C DLN +  IFD +  K+ ++W++M+     H
Sbjct: 621 MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHH 680

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
               EAL++F EM+  GV +D  +    L A  N+  LE  + LHG  +KLG  S   V 
Sbjct: 681 GCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 740

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            A    Y KCG  EM   L    +  ++  ++WN +ISA+A+HG + +  + + +M +  
Sbjct: 741 NAAMDMYGKCG--EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLG 798

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
            +PD +TF+ LL+AC + GLV+EG   +  M   +G  P  EH   +++LLGR+G +  A
Sbjct: 799 PKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHA 858

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
              +K+MP  P+   W  LL+AC++H   ELA  TAE L+ ++P +   YVL SN+ A +
Sbjct: 859 EGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATS 918

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           GKW  V  +R  +    +KK P CSW+++   VH F   ++ HPQA  I   LG    E+
Sbjct: 919 GKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLG----EL 974

Query: 714 MEGRRES 720
           M+  +E+
Sbjct: 975 MKMTKEA 981



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 146/581 (25%), Positives = 274/581 (47%), Gaps = 12/581 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           + +HA + I+  ++  +  ++ LI+ Y+  G +  ++ VF+ +   N   + T+L    +
Sbjct: 114 KALHA-FCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS---CLLDFISGEKIHAQVVKLGFDSF 165
            G YE+ + ++ QM    + P       +I +CS    + D   G ++H  VVK G    
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD--EGFQVHGFVVKTGILGD 230

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             VG ALV FY    G   N + + +         W SL+     +G   +   +++ MR
Sbjct: 231 VYVGTALVHFYGSI-GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 289

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            EG   +  T   +  S   L+   LG  V    +   F   +SV  +L+SM+S  +S+E
Sbjct: 290 QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVE 349

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           +A  +FD M++ D + WN MISAY   G  +ESL     M       +  T  + +S  S
Sbjct: 350 EACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCS 409

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++ N++WG+ +H  V++ G D  V + N+L+ +Y E      A  +F ++  + ++SW+S
Sbjct: 410 SVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNS 469

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           M+  YV   + L+ L++ +E+   G  ++ VT  + L AC N   L   K +H   +  G
Sbjct: 470 MMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAG 529

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            +    V  A+   Y K G +  A ++   + +   D +TWN++I  +A++ + ++  K 
Sbjct: 530 FHDFLIVGNALVTMYGKLGMMMEAKKVL--QTMPQPDRVTWNALIGGHAENEEPNEAVKA 587

Query: 526 YTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           Y  +++  +  + IT + +L AC     L++ G  I   +  + G+E       S++ + 
Sbjct: 588 YKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT-GFESDDYVKNSLITMY 646

Query: 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            + G ++ +  +   +  K     W  +++A   H   E A
Sbjct: 647 AKCGDLNSSNYIFDGLGNKSPI-TWNAMVAANAHHGCGEEA 686



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 9/296 (3%)

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L+   E+ S   G+ +H   +V      +     L++MYSK  ++E A+ +FD+M  ++ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWGKQMHA 358
             W+ M+S Y + G  +E++ L   M   G   + F   + +++ S    + + G Q+H 
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            V++ G    V V  +L+  Y     +  A+K+F+ +    VVSW+S++ GY       E
Sbjct: 221 FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 280

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH--VKY-LHGYSMKLGLNSLSSVNTA 475
            L ++  M+ EGV  +  T   +  +C   G LE   + Y + G+ ++ G     SV  +
Sbjct: 281 VLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANS 337

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +   ++    +E A  +FD   ++  DII+WN+MISAYA HG   +  + +  M+ 
Sbjct: 338 LISMFSSFSSVEEACYVFDH--MNECDIISWNAMISAYAHHGLCRESLRCFHWMRH 391



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 137/270 (50%), Gaps = 9/270 (3%)

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           GK +HA  +    +  +   N+LI+MY +  ++  AR +FD ++ +   SWS+M+ GYV 
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHGYSMKLGLNSLSS 471
                EA+ LF +M   GVE +   + +++ AC   G +    + +HG+ +K G+     
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V TA+   Y   G +  A +LF+E  +   ++++W S++  Y+  G+  +   +Y +M+Q
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEE--MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 290

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE--SYGYEPSQEHYASMVNLLGRAGH 589
             V  +  TF  + ++C   GL+E+  + ++ +     YG+E S     S++++      
Sbjct: 291 EGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 347

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMH 619
           ++EA  +   M  + D   W  ++SA   H
Sbjct: 348 VEEACYVFDHMN-ECDIISWNAMISAYAHH 376


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 332/639 (51%), Gaps = 21/639 (3%)

Query: 45  PQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL-LYGTIL 103
           P    Q+HA  ++L   H +      L+ SY   G    +Q +   +  P S+ +  T+L
Sbjct: 28  PTTTAQLHA--LLLTSGHLHYDSPHLLLYSYCACGCPFDAQNLLAQMPQPASVSVSNTLL 85

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
           ++ S  G + + L +Y QM     +    T+ F  ++C+ L     G  +H + +  GF 
Sbjct: 86  RSYSGLGFHRQALALYSQM----RHFDHLTFTFAAKACAGLRLRRHGRAVHGRALAAGFG 141

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFE 219
           S   V +A+V  Y++C      +    +  F  L SR    WN++I+  V++G++E++ E
Sbjct: 142 SDAYVQNAIVSMYMRC-----RDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALE 196

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           +F+ M   G   D  +++++L +  + + L  GR VH +AVV    K ++V  AL+ MY 
Sbjct: 197 VFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYG 256

Query: 280 KLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESLELLMCM-VRSGFRADLFTA 337
           K  SLEDA+ +FD+ S DKD V W +MI AY  +    ++  L   M V S  + +  T 
Sbjct: 257 KCGSLEDARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTM 316

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
              +S+ +++ + +  K  HA  +R G    + V  +L+D Y +C  +     + +    
Sbjct: 317 AHLLSACASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMGVIDMVVEKGSR 376

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           +T  +W++ I GY   DQ  +AL LF  M  E V  D  T+ +++PA      L     +
Sbjct: 377 RTE-TWNAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNI 435

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H   +  G    + + T +   YAK G + +A ELF  + +  KD++ W ++I+ Y  HG
Sbjct: 436 HCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELF--QCLPEKDVVAWTTVIAGYGMHG 493

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
                  LY++M +  V P+ +T   LL +C +AG+V+EG  +F +M   +G  P+ EHY
Sbjct: 494 HAQTAMLLYSRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHY 553

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
             +V++LGRAG ++EA   ++DMPF+P   VW  LL AC +H   E  E+ A+ L  +EP
Sbjct: 554 LCLVDMLGRAGRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFELEP 613

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           +N GNYVLL  +YAAA +W+ V  +R  +    L K PG
Sbjct: 614 DNVGNYVLLGKVYAAAERWSDVQHLRRVMEGMDLHKDPG 652


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 184/533 (34%), Positives = 291/533 (54%), Gaps = 20/533 (3%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRM-EGAEFDSGTLINL---LRSTVELKSLELGRIVH 256
           W   I +A   G    +  LF  MR  + A   S  L +L   L+S   L    LG  +H
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLH 81

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLAS--------------LEDAKMLFDKMSDKDRVVW 302
            +A+ S    D     ALL++Y KL +              LE  + +FD+M +KD V W
Sbjct: 82  ALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSW 141

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           N ++    +SG   E+L L+  M R G + D FT  + +   +   ++  G ++H    R
Sbjct: 142 NTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATR 201

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           NG    V V +SLIDMY  C   + + K+FD++  +  + W+SM+ G   +    EAL L
Sbjct: 202 NGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGL 261

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F  M   G++   VT  +++PAC N+ +L   K LH Y ++ G +    +++++   Y K
Sbjct: 262 FRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCK 321

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
           CG + +A  +FD  +I S DI++W +MI  +A HG   +   L+ +M+  +++P+ ITFL
Sbjct: 322 CGNVSIARRIFD--RIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFL 379

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            +LTAC +AGLV++G   F  M + YG  PS EH+A++ + LGR G ++EA   +  M  
Sbjct: 380 AVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKI 439

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
           KP A VW  LL ACK+H  T LAE  A+K+  +EP + G++++LSN Y+++G+WN  A +
Sbjct: 440 KPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHL 499

Query: 663 RTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           R  +R +G++K P CSWIE+    H F A D+SHP  + I   L +   +++ 
Sbjct: 500 RKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVR 552



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 201/398 (50%), Gaps = 15/398 (3%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM--- 189
           + P  ++SC+ L     G  +HA  ++ G  +     +AL+  Y K      +   M   
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 190 ------IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
                 +++ F ++  +    WN+L+    ++G+  ++  L + M  +G + DS TL ++
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L    E   +  G  +H  A  + F  D+ V ++L+ MY+     + +  +FD +  +D 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           ++WN M++   Q+G   E+L L   M+ SG +    T  + + +   + ++  GKQ+HA 
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           V+R G D  V + +SLIDMYC+C +++ AR+IFD +++  +VSW++MI G+  H  + EA
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFI 478
           L LF  M+L  ++ + +T + +L AC + G ++   KY +  S   G+      + A+  
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALAD 419

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +  + G +E A       KI     + W++++ A   H
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASV-WSTLLRACKVH 456



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 151/341 (44%), Gaps = 11/341 (3%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+ +   + + + T++   ++ G + + L + ++M      P   T   V+   +  
Sbjct: 127 RKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEG 186

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D   G ++H    + GF     VG +L++ Y  C            + F +L  R    
Sbjct: 187 ADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANC-----TRTDYSVKVFDNLPVRDAIL 241

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNS+++   QNG  +++  LF+ M   G +    T  +L+ +   L SL LG+ +H   +
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI 301

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  ++ ++++L+ MY K  ++  A+ +FD++   D V W  MI  +   G  +E+L 
Sbjct: 302 RGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALV 361

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG-KQMHANVLRNGSDYQVSVHNSLIDMY 379
           L   M     + +  T +A +++ S    ++ G K  ++     G    +  H +L D  
Sbjct: 362 LFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTL 421

Query: 380 CECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTHDQSLEA 419
                L  A      +K K   S WS++++    H  ++ A
Sbjct: 422 GRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLA 462



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 122/260 (46%), Gaps = 11/260 (4%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           +   +G H ++ + S+LID YAN      S +VF+++   +++L+ ++L   ++ G  ++
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDE 257

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            L ++++M    + P   T+  +I +C  L   + G+++HA V++ GFD    +  +L++
Sbjct: 258 ALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLID 317

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y KC         + +R F  ++S     W ++I     +G + ++  LF  M +   +
Sbjct: 318 MYCKC-----GNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLK 372

Query: 231 FDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
            +  T + +L +      ++ G +  + ++        L  + AL     +   LE+A  
Sbjct: 373 PNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYN 432

Query: 290 LFDKMSDKDRV-VWNIMISA 308
               M  K    VW+ ++ A
Sbjct: 433 FISGMKIKPTASVWSTLLRA 452



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 17/156 (10%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDS 74
           F R   +  +P M  T S SL+  C N   L   +Q+HA Y+I  G   N+ +SS+LID 
Sbjct: 262 FRRMLHSGIKP-MPVTFS-SLIPACGNLASLLLGKQLHA-YVIRGGFDGNVFISSSLIDM 318

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G +S+++++F+ I SP+ + +  ++   +  G   + L+++ +M L ++ P   T+
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITF 378

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
             V+ +CS           HA +V  G+  F+ + D
Sbjct: 379 LAVLTACS-----------HAGLVDKGWKYFNSMSD 403


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  331 bits (849), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 179/508 (35%), Positives = 295/508 (58%), Gaps = 6/508 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LI+  V N    ++ +LF  +R  G      T   +L++     + +LG  +H + V
Sbjct: 79  YNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVV 138

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  D++  T+LLS+YS    L DA  +F+++ ++  V W  + S Y  +G  +E+++
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAID 198

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   MV  G R D +  +  +S+   + +++ G+ +  ++          V  +L+++Y 
Sbjct: 199 LFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYA 258

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  AR +FDS+  K +V+WS+MI+GY ++    E +  F +M  E ++ D  +I+ 
Sbjct: 259 KCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVG 318

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--NTAIFISYAKCGCIEMAGELFDEEKI 498
            L +C ++GAL+  ++  G S+      L+++    A+   YAKCG +    E+F E K 
Sbjct: 319 FLSSCASLGALDLGEW--GISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK- 375

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
             KDI+  N+ IS  AK+G     F ++ Q ++  + PD  TFLGLL  CV+AGL+++G 
Sbjct: 376 -EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGL 434

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F  +   Y  + + EHY  MV+L GRAG +D+A  L+ DMP +P+A VWG LLS C++
Sbjct: 435 RFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRL 494

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
             +T+LAE   ++LI++EP NAGNYV LSNIY+ +G+W+  A++R  +  +G+KK PG S
Sbjct: 495 VKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYS 554

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTIL 706
           WIE+   VHEF A D+SHP +D IY  L
Sbjct: 555 WIELEGTVHEFLADDKSHPLSDKIYAKL 582



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/569 (24%), Positives = 258/569 (45%), Gaps = 50/569 (8%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +L+++     HL+Q+H   +I H LH +  L + L+           S  +F+    PN 
Sbjct: 18  TLISVASTFNHLKQVHVS-LIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNI 76

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            LY T++        + +TL ++  +    +     T+P V+++C+   +   G  +H+ 
Sbjct: 77  FLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSL 136

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNG 212
           VVK GF+   DV        I    G  N+     + F+++  R    W +L S     G
Sbjct: 137 VVKCGFNH--DVAAMTSLLSIYSGSGRLNDA---HKVFEEIPERSVVTWTALFSGYTTAG 191

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
           K  ++ +LFK M   G   DS  ++ +L + V +  L+ G  +       +  K+  V T
Sbjct: 192 KHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRT 251

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
            L+++Y+K   +E A+ +FD M +KD V W+ MI  Y  + FPKE +E  + M++   + 
Sbjct: 252 TLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKP 311

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           D F+ +  +SS +++  ++ G+   + + R+     + + N+LIDMY +C  +    ++F
Sbjct: 312 DQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVF 371

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +K K +V  ++ I G   +     +  +F + +  G+  D  T + +L  CV+ G ++
Sbjct: 372 KEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQ 431

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
                       GL   ++++      YA    +E  G                  M+  
Sbjct: 432 D-----------GLRFFNAISCV----YALKRTVEHYG-----------------CMVDL 459

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           + + G     ++L   M    +RP+ I +  LL+ C    LV++ ++    +KE    EP
Sbjct: 460 WGRAGMLDDAYRLICDMP---MRPNAIVWGALLSGC---RLVKDTQLAETVLKELIALEP 513

Query: 573 -SQEHYASMVNLLGRAGHMDEARELVKDM 600
            +  +Y  + N+   +G  DEA E V+DM
Sbjct: 514 WNAGNYVQLSNIYSVSGRWDEAAE-VRDM 541



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 166/315 (52%), Gaps = 3/315 (0%)

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
           +LF      +  ++N +I+ +  +    E+L+L + + + G     FT    + + +   
Sbjct: 66  LLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRAS 125

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           N + G  +H+ V++ G ++ V+   SL+ +Y     LN A K+F+ +  ++VV+W+++  
Sbjct: 126 NRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFS 185

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           GY T  +  EA+ LF +M   GV  D   I+ +L ACV++G L+  +++  +  ++ +  
Sbjct: 186 GYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQK 245

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            S V T +   YAKCG +E A  +FD   +  KDI+TW++MI  YA +    +  + + Q
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDS--MGEKDIVTWSTMIQGYASNSFPKEGIEFFLQ 303

Query: 529 MKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588
           M Q +++PD  + +G L++C + G ++ G      + + + +  +     +++++  + G
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCG 362

Query: 589 HMDEARELVKDMPFK 603
            M    E+ K+M  K
Sbjct: 363 AMARGFEVFKEMKEK 377


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 208/678 (30%), Positives = 364/678 (53%), Gaps = 24/678 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH  +    G    + +S+ ++  Y   G    +  +F ++  P+ + + TIL   S F
Sbjct: 22  QIHG-FSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTIL---SGF 77

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            + +  L    +M    +     TY   +  C     F  G ++ + VVK G +S   VG
Sbjct: 78  DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVG 137

Query: 170 DALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGK-SEKSFELFKLMRME 227
           ++ +  Y +  G F   + +  +  FKD+ S WNSL+S   Q G    ++  +F+ M  E
Sbjct: 138 NSFITMYSR-SGSFRGARRVFDEMPFKDMIS-WNSLLSGLSQEGTFGFEAVLIFRDMMRE 195

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E D  +  +++ +      L+L R +H + +   +   L V   L+S YSK   LE  
Sbjct: 196 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 255

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           K +F +MS+++ V W  MIS+        +++ + + M   G   +  T +  ++++   
Sbjct: 256 KSVFYQMSERNVVSWTTMISSNRD-----DAVSIFLNMRLDGVYPNEVTFVGLLNAVKCN 310

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           + I+ G ++H   ++ G   + SV NS I MY + E L  A+K FD +  + ++SW++MI
Sbjct: 311 EQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMI 370

Query: 408 KGYVTHDQSLEALRLFSEMKLEGV--EVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            G+  +  S EAL++F     E +  E  F +++N +    +I +++H +  H + +KLG
Sbjct: 371 SGFAQNGFSHEALKMFLSATAETMPNEYTFGSVLNAIAFAEDI-SVKHGQRCHAHLLKLG 429

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           LNS   V++A+   YAK G I  + ++F+E  +  ++   W S+ISAY+ HGD++    L
Sbjct: 430 LNSCPVVSSALLDMYAKRGNINESEKVFNE--MSQRNQFVWTSIISAYSSHGDFNSVMNL 487

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           + +M + +V PDL+TFL +LTAC   G+V++G  I   M E Y  EPS EHY+ MV++LG
Sbjct: 488 FHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDMLG 547

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG + EA EL+ ++P  P   +   +L +C++H   ++    AE  + M+PE +G+YV 
Sbjct: 548 RAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQ 607

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK-----LVHEFWAADQSHPQAD 700
           + NIYA   +W+  A++R  +R + + K  G SWI++G       +  F + D+SHP++D
Sbjct: 608 MYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSD 667

Query: 701 AIYTILGILELEI-MEGR 717
            IY ++ I+ LE+ +EG+
Sbjct: 668 EIYRMVEIVGLEMNLEGK 685



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 232/485 (47%), Gaps = 21/485 (4%)

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
           +C  D   G +IH      GF SF  V +A++  Y K  G F+N   + +         W
Sbjct: 12  ACRGDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKA-GRFDNALYIFENLVDPDVVSW 70

Query: 202 NSLISLAVQNGKSEKSFELFKLMRME--GAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           N+++S     G  +    L  ++RM+  G  FD+ T    L   V  +   LG  +    
Sbjct: 71  NTILS-----GFDDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTV 125

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-FPKES 318
           V S    DL V  + ++MYS+  S   A+ +FD+M  KD + WN ++S   Q G F  E+
Sbjct: 126 VKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEA 185

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + +   M+R G   D  +  + +++     +++  +Q+H   ++ G +  + V N L+  
Sbjct: 186 VLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSR 245

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  L   + +F  +  + VVSW++MI          +A+ +F  M+L+GV  + VT 
Sbjct: 246 YSKCGVLEAVKSVFYQMSERNVVSWTTMIS-----SNRDDAVSIFLNMRLDGVYPNEVTF 300

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           + +L A      ++    +HG  +K G  S  SV  +    YAK   +E A + FD+  I
Sbjct: 301 VGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDD--I 358

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG--LVEE 556
             ++II+WN+MIS +A++G   +  K++     ++  P+  TF  +L A   A    V+ 
Sbjct: 359 TFREIISWNAMISGFAQNGFSHEALKMFLS-ATAETMPNEYTFGSVLNAIAFAEDISVKH 417

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+     + +  G        ++++++  + G+++E+ ++  +M  + +  VW  ++SA 
Sbjct: 418 GQRCHAHLLK-LGLNSCPVVSSALLDMYAKRGNINESEKVFNEMS-QRNQFVWTSIISAY 475

Query: 617 KMHSE 621
             H +
Sbjct: 476 SSHGD 480



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 9/183 (4%)

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
           +D VT+   L AC   G L+    +HG+S   G  S   V+ A+   Y K G  + A  +
Sbjct: 1   MDEVTLCLALKACR--GDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYI 58

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F  E +   D+++WN+++S +    D         +MK + V  D  T+   L+ CV + 
Sbjct: 59  F--ENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSE 113

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
               G  +   + +S G E       S + +  R+G    AR +  +MPFK D   W  L
Sbjct: 114 GFRLGLQLQSTVVKS-GLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFK-DMISWNSL 171

Query: 613 LSA 615
           LS 
Sbjct: 172 LSG 174


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 198/664 (29%), Positives = 353/664 (53%), Gaps = 9/664 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-SPNSLLYGTILK 104
           +H + +HA  +I  G      + ++++  Y   G   ++  VFNS+  S +S+ +  ++ 
Sbjct: 64  RHGKSLHA-CLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIH 122

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
                G     L  +    +    P   T   VI++C  L     G  +H  ++K GF +
Sbjct: 123 GHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWA 182

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KL 223
              V ++L+  Y+  D   E  + +     +     W+ +I   +Q  + +   ++F K+
Sbjct: 183 ISSVQNSLLSMYVDAD--MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKM 240

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           + + G E D   ++++L++    + +  GR+VH + +   F  DL V  +L+ MYSK   
Sbjct: 241 VLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKD 300

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
              A  +F+++S ++ V WN M+S +  +    E+  L+  M +     D  T +  +  
Sbjct: 301 AGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQI 360

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
                +    K +H  ++R GS+    V ++LID Y +C  +  A ++F  ++ + VVSW
Sbjct: 361 CKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSW 420

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           S+MI G+    +  EA+ ++ EM  + V+ + +TIIN+L AC     L+  K+ HG +++
Sbjct: 421 STMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIR 480

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G  S  +V TA+   Y+KCG I  +   FD+  +  K+I+TW++MI+AY  +G   +  
Sbjct: 481 QGFASEVTVGTAVVDMYSKCGEILASRRAFDQLAL--KNIVTWSAMIAAYGMNGLAHEAL 538

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+ +MK+  ++P+ +T L +L AC + GLVEEG  +FK M +  G EP  EHY+ MV++
Sbjct: 539 ALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDM 598

Query: 584 LGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           LGRAG +D A E++K MP   K  A +WG LLSAC+ +  TEL +    +++ +EP N+ 
Sbjct: 599 LGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSA 658

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            Y++ S++YAA G W+  A++R   +++G+K   G S + I      F A D SHP++D 
Sbjct: 659 GYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDE 718

Query: 702 IYTI 705
           I+++
Sbjct: 719 IFSM 722



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 169/600 (28%), Positives = 308/600 (51%), Gaps = 25/600 (4%)

Query: 88  FNSITS----PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE-DTYPFVIRSCS 142
           F++I S    PN +L    +K  S  G++++ +  Y ++    +   +   +P ++++ S
Sbjct: 3   FSAIVSGSKLPNWILR---IKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWS 59

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSR 200
             L    G+ +HA ++K GFDSF  +G++++ FYI+C G F+    +    R+ +D  S 
Sbjct: 60  -FLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRC-GDFDIAVDVFNSMRRSRDSVS- 116

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN LI   + NG        F   R+ G E +  T++ ++++   L +   G I+H   +
Sbjct: 117 WNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLI 176

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S F    SV  +LLSMY   A +E A+ LFD+M +KD + W++MI  Y Q   P+  L+
Sbjct: 177 KSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQ 235

Query: 321 LLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           +   MV   G   D    ++ + + ++ +++  G+ +H  V+  G D  + V NSLIDMY
Sbjct: 236 MFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMY 295

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C+D   A K+F+ +  +  VSW+SM+ G+V ++   EA  L S M+ E VE D VT++
Sbjct: 296 SKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLV 355

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           NIL  C       H K +H   ++ G  +   V +A+  +YAKC  IE+A E+F   ++ 
Sbjct: 356 NILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVF--ARMR 413

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEGR 558
            +D+++W++MIS +A  G   +   +Y +M +  V+P++IT + LL AC V A L     
Sbjct: 414 RRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKW 473

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
                +++ +  E +     ++V++  + G +  +R     +  K +   W  +++A  M
Sbjct: 474 AHGVAIRQGFASEVTVG--TAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAMIAAYGM 530

Query: 619 H--SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           +  +   LA     K   ++P       +L+          G++  ++ +++ GL+  PG
Sbjct: 531 NGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLE--PG 588


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 280/509 (55%), Gaps = 34/509 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LIS     G++  +  LF  MR  G + D  TL  ++ +  +   L +G++ H VAV
Sbjct: 108 YNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL-IGQL-HSVAV 165

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESL 319
            S F   +SVN ALL+ Y K   L+DAK +F  M   +D V WN MI AY Q     ++L
Sbjct: 166 SSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKAL 225

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   MVR G   D+FT  + +++ + ++++  G Q H  +++ G      V + LID+Y
Sbjct: 226 GLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLY 285

Query: 380 CECED-LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVT 437
            +C   ++  RK+F+ +    +V W++M+ GY  +++ LE AL  F +M+  G   +  +
Sbjct: 286 SKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCS 345

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
            + ++ AC N+ +    K +H  ++K                            LFD  +
Sbjct: 346 FVCVISACSNLSSPSQGKQIHSLALK---------------------------RLFD--R 376

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +   + ++ NSMI+ YA+HG   +   L+  M +  + P  ITF+ +L+AC + G VEEG
Sbjct: 377 MAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEG 436

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
              F  MKE +  EP  EHY+ M++LLGRAG + EA  L+  MPF P +  W  LL AC+
Sbjct: 437 WNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACR 496

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGC 677
            H   ELA   A +++ +EP NA  YV+LSN+YA+AG+W  VA +R F+RDRG+KK PGC
Sbjct: 497 THGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGC 556

Query: 678 SWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SWIE+ K +H F A D SHP    IY  L
Sbjct: 557 SWIEVKKRIHVFVAEDSSHPMIKEIYEFL 585



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 126/511 (24%), Positives = 228/511 (44%), Gaps = 44/511 (8%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+   + +I +YA      ++ Q+F+ I  P+ + Y T++   +  GE    L ++  M 
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              +     T   VI +C   +  I   ++H+  V  GFDS+  V +AL+ +Y K +G  
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGK-NGDL 189

Query: 184 ENEKGMI--QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           ++ K +       +D  S WNS+I    Q+ +  K+  LF+ M   G   D  TL ++L 
Sbjct: 190 DDAKRVFYGMGGIRDEVS-WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL-ASLEDAKMLFDKMSDKDRV 300
           +   L+ L  G   H   + + F ++  V + L+ +YSK    + D + +F+++++ D V
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 301 VWNIMISAYYQS-GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           +WN M+S Y Q+  F +++LE    M   G+R +  + +  +S+ S + +   GKQ+H+ 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            L                           +++FD +     VS +SMI GY  H   +E+
Sbjct: 369 AL---------------------------KRLFDRMAEHNTVSLNSMIAGYAQHGIEMES 401

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFI 478
           L LF  M    +    +T I++L AC + G +E    Y +    K  +   +   + +  
Sbjct: 402 LHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMID 461

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ---SDVR 535
              + G +  A  L      +    I W S++ A   HG+     K   Q+ Q   S+  
Sbjct: 462 LLGRAGKLSEAENLIARMPFNPGS-IGWASLLGACRTHGNIELAVKAANQVLQLEPSNAA 520

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           P ++    L     +AG  EE   + K M++
Sbjct: 521 PYVV----LSNMYASAGRWEEVATVRKFMRD 547



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 140/283 (49%), Gaps = 20/283 (7%)

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           S    + W ++   ++    SD  V   N++I  Y +      A ++FD +    +VS++
Sbjct: 54  SKCGRLAWARKAFQDI----SDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYN 109

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           ++I  Y    ++  AL LFS M+  G+++D  T+  ++ AC +   L  +  LH  ++  
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL--IGQLHSVAVSS 167

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G +S  SVN A+   Y K G ++ A  +F       +D ++WNSMI AY +H + S+   
Sbjct: 168 GFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG-GIRDEVSWNSMIVAYGQHQEGSKALG 226

Query: 525 LYTQMKQSDVRPDLITFLGLLTA--C---VNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           L+ +M +  +  D+ T   +LTA  C   ++ GL   G++I        G+  +    + 
Sbjct: 227 LFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI------KTGFHQNSHVGSG 280

Query: 580 MVNLLGR-AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           +++L  +  G M + R++ +++  +PD  +W  ++S    + E
Sbjct: 281 LIDLYSKCGGGMSDCRKVFEEIT-EPDLVLWNTMVSGYSQNEE 322



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 165/377 (43%), Gaps = 34/377 (9%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYG 100
           C++   + Q+H+   +  G    + +++ L+  Y   G L  +++VF  +    + + + 
Sbjct: 151 CDDVGLIGQLHS-VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWN 209

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           +++    +  E  K L ++++M  + +     T   V+ + +CL D   G + H Q++K 
Sbjct: 210 SMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT 269

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS-EKSFE 219
           GF     VG  L++ Y KC GG  + + + +   +     WN+++S   QN +  E + E
Sbjct: 270 GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALE 329

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
            F+ M+  G   +  + + ++ +   L S   G+ +H +A+                   
Sbjct: 330 CFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL------------------- 370

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
                   K LFD+M++ + V  N MI+ Y Q G   ESL L   M+         T I+
Sbjct: 371 --------KRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFIS 422

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVK- 396
            +S+ +    +E G   + N+++   + +     ++ +ID+      L+ A  +   +  
Sbjct: 423 VLSACAHTGRVEEGWN-YFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPF 481

Query: 397 TKTVVSWSSMIKGYVTH 413
               + W+S++    TH
Sbjct: 482 NPGSIGWASLLGACRTH 498



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 34/216 (15%)

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE---- 495
           ++L  C+    L   K LH   +K  +   +  +    + Y+KCG +  A + F +    
Sbjct: 13  HLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDP 72

Query: 496 -------------------------EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
                                    ++I   D++++N++ISAYA  G+ +    L++ M+
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 531 QSDVRPDLITFLGLLTACV-NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           +  +  D  T   ++TAC  + GL+ +       +  S G++       +++   G+ G 
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIGQ----LHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +D+A+ +   M    D   W  ++ A   H E   A
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKA 224


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 198/664 (29%), Positives = 353/664 (53%), Gaps = 9/664 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-SPNSLLYGTILK 104
           +H + +HA  +I  G      + ++++  Y   G   ++  VFNS+  S +S+ +  ++ 
Sbjct: 64  RHGKSLHA-CLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIH 122

Query: 105 NLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
                G     L  +    +    P   T   VI++C  L     G  +H  ++K GF +
Sbjct: 123 GHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWA 182

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KL 223
              V ++L+  Y+  D   E  + +     +     W+ +I   +Q  + +   ++F K+
Sbjct: 183 ISSVQNSLLSMYVDAD--MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKM 240

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           + + G E D   ++++L++    + +  GR+VH + +   F  DL V  +L+ MYSK   
Sbjct: 241 VLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKD 300

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
              A  +F+++S ++ V WN M+S +  +    E+  L+  M +     D  T +  +  
Sbjct: 301 AGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQI 360

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
                +    K +H  ++R GS+    V ++LID Y +C  +  A ++F  ++ + VVSW
Sbjct: 361 CKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSW 420

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           S+MI G+    +  EA+ ++ EM  + V+ + +TIIN+L AC     L+  K+ HG +++
Sbjct: 421 STMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIR 480

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
            G  S  +V TA+   Y+KCG I  +   FD+  +  K+I+TW++MI+AY  +G   +  
Sbjct: 481 QGFASEVTVGTAVVDMYSKCGEILASRRAFDQLAL--KNIVTWSAMIAAYGMNGLAHEAL 538

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
            L+ +MK+  ++P+ +T L +L AC + GLVEEG  +FK M +  G EP  EHY+ MV++
Sbjct: 539 ALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDM 598

Query: 584 LGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           LGRAG +D A E++K MP   K  A +WG LLSAC+ +  TEL +    +++ +EP N+ 
Sbjct: 599 LGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSA 658

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            Y++ S++YAA G W+  A++R   +++G+K   G S + I      F A D SHP++D 
Sbjct: 659 GYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDE 718

Query: 702 IYTI 705
           I+++
Sbjct: 719 IFSM 722



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 169/600 (28%), Positives = 308/600 (51%), Gaps = 25/600 (4%)

Query: 88  FNSITS----PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE-DTYPFVIRSCS 142
           F++I S    PN +L    +K  S  G++++ +  Y ++    +   +   +P ++++ S
Sbjct: 3   FSAIVSGSKLPNWILR---IKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWS 59

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSR 200
             L    G+ +HA ++K GFDSF  +G++++ FYI+C G F+    +    R+ +D  S 
Sbjct: 60  -FLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRC-GDFDIAVDVFNSMRRSRDSVS- 116

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN LI   + NG        F   R+ G E +  T++ ++++   L +   G I+H   +
Sbjct: 117 WNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLI 176

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S F    SV  +LLSMY   A +E A+ LFD+M +KD + W++MI  Y Q   P+  L+
Sbjct: 177 KSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQ 235

Query: 321 LLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           +   MV   G   D    ++ + + ++ +++  G+ +H  V+  G D  + V NSLIDMY
Sbjct: 236 MFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMY 295

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C+D   A K+F+ +  +  VSW+SM+ G+V ++   EA  L S M+ E VE D VT++
Sbjct: 296 SKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLV 355

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           NIL  C       H K +H   ++ G  +   V +A+  +YAKC  IE+A E+F   ++ 
Sbjct: 356 NILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVF--ARMR 413

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEGR 558
            +D+++W++MIS +A  G   +   +Y +M +  V+P++IT + LL AC V A L     
Sbjct: 414 RRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKW 473

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
                +++ +  E +     ++V++  + G +  +R     +  K +   W  +++A  M
Sbjct: 474 AHGVAIRQGFASEVTVG--TAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAMIAAYGM 530

Query: 619 H--SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           +  +   LA     K   ++P       +L+          G++  ++ +++ GL+  PG
Sbjct: 531 NGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLE--PG 588


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 276/480 (57%), Gaps = 8/480 (1%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           ++L+S V   SL  GR +H   +VS    D  ++T L+ +Y+    +  A+ LFD M  +
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKR 126

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           +  +WN++I AY + G  + ++ L   MV  G   D FT    + + + + ++E G+++H
Sbjct: 127 NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVH 186

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             V        V V   ++DMY +C  ++ AR +FD +  +  V W+SMI  Y  + + +
Sbjct: 187 QRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPM 246

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           EAL L  +M   G+     T+++ + A  +  AL   + LHG+  + G      + T++ 
Sbjct: 247 EALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLV 306

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK-QSDVRP 536
             YAK G +++A  LF  E++  +++++WN+MI  Y  HG   +   L+ +MK  + V P
Sbjct: 307 DMYAKSGWVQVARVLF--EQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTP 364

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D ITF+G+L+AC + G+VEE +  F  M  +Y  +P+ +HY  ++++LG  G  +EA +L
Sbjct: 365 DNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDL 424

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           +K M  +PD+ +WG LL+ CK+H   EL EL  +KLI +EPE+AGNYV LSNIYA +GKW
Sbjct: 425 IKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKW 484

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEG 716
              A++R  + +RGLKK   CSWIE+    H F   D SHP++D IY      ELE +EG
Sbjct: 485 EKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYG-----ELERLEG 539



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 176/337 (52%), Gaps = 15/337 (4%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           +++SC       +G ++H +++  G      +   LV+ Y  C      + G  +R F  
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAAC-----GQVGHARRLFDG 122

Query: 197 LKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           +  R    WN LI    + G  E +  L++ M   G E D+ T   +L++   L  LE G
Sbjct: 123 MPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETG 182

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH     + + +D+ V   ++ MY+K   ++DA+ +FD ++ +D VVWN MI+AY Q+
Sbjct: 183 REVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQN 242

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G P E+L L   M  +G    + T ++AVS+ +    +  G+++H    R G   Q  + 
Sbjct: 243 GRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLK 302

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-V 431
            SL+DMY +   +  AR +F+ +  + +VSW++MI GY  H  + EAL LF++MK +  V
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQV 362

Query: 432 EVDFVTIINILPACVNIGALEHVK---YL--HGYSMK 463
             D +T + +L AC + G +E  K   YL  + YS+K
Sbjct: 363 TPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIK 399



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 161/327 (49%), Gaps = 18/327 (5%)

Query: 5   LPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGL 61
           LPP     +        P   + PH    H+ S+L  C     L+   Q+H R +++ GL
Sbjct: 36  LPPNTGFAASPPPPSTNPRLASSPHAYHHHT-SILQSCVASGSLRAGRQLHGR-LLVSGL 93

Query: 62  HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
             + +LS+ L+D YA  G +  ++++F+ +   N  L+  +++  ++ G  E  + +Y+ 
Sbjct: 94  GPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRG 153

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV--VKLGFDSFDDVGDALVEFYIKC 179
           M    + P   TYP V+++C+ LLD  +G ++H +V   + G D F  V   +V+ Y KC
Sbjct: 154 MVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVF--VCAGVVDMYAKC 211

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
            G  ++ + +    F  +  R    WNS+I+   QNG+  ++  L + M   G      T
Sbjct: 212 -GCVDDARAV----FDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIAT 266

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L++ + +  +  +L  GR +H       F     + T+L+ MY+K   ++ A++LF+++ 
Sbjct: 267 LVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLM 326

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELL 322
            ++ V WN MI  Y   G   E+L L 
Sbjct: 327 KRELVSWNAMICGYGMHGHADEALALF 353


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/464 (35%), Positives = 277/464 (59%), Gaps = 3/464 (0%)

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           LL+     K L  GRIVH   + S F  D+ +   LL+MY+K  SLE+A+ +F+KM  +D
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V W  +IS Y Q   P ++L     M+R G+  + FT  + + + +  +    G Q+H 
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             ++ G D  V V ++L+D+Y     ++ A+ +FD+++++  VSW+++I G+     + +
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF  M  +G      +  ++  AC + G LE  K++H Y +K G   ++     +  
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            YAK G I  A ++FD  ++  +D+++WNS+++AYA+HG   +    + +M++  +RP+ 
Sbjct: 306 MYAKSGSIHDARKIFD--RLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           I+FL +LTAC ++GL++EG   ++ MK+  G  P   HY ++V+LLGRAG ++ A   ++
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIE 422

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP +P A +W  LL+AC+MH  TEL    AE +  ++P++ G +V+L NIYA+ G+WN 
Sbjct: 423 EMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWND 482

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            A++R  +++ G+KK P CSW+EI   +H F A D+ HPQ + I
Sbjct: 483 AARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 214/446 (47%), Gaps = 10/446 (2%)

Query: 126 SMYPAEDT-YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           S  PA+   Y  +++ C+     I G  +HA +++  F     +G+ L+  Y KC G  E
Sbjct: 54  SYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC-GSLE 112

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
             + + ++  +     W +LIS   Q+ +   +   F  M   G   +  TL +++++  
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
             +    G  +H   V   F  ++ V +ALL +Y++   ++DA+++FD +  ++ V WN 
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           +I+ + +    +++LEL   M+R GFR   F+  +   + S+   +E GK +HA ++++G
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
                   N+L+DMY +   ++ ARKIFD +  + VVSW+S++  Y  H    EA+  F 
Sbjct: 293 EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           EM+  G+  + ++ +++L AC + G L+   + +    K G+   +     +     + G
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAG 412

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD---WSQCFKLYTQMKQSDVRPDLITF 541
            +  A    +E  I+    I W ++++A   H +    +   +   ++   D  P +I  
Sbjct: 413 DLNRALRFIEEMPIEPTAAI-WKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI-- 469

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKES 567
             L     + G   +   + K+MKES
Sbjct: 470 --LYNIYASGGRWNDAARVRKKMKES 493



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 179/371 (48%), Gaps = 11/371 (2%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +HA +I+      ++++ + L++ YA  G L  +++VF  +   + + + T++   S+  
Sbjct: 82  VHA-HILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHD 140

Query: 111 EYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD 170
                LL + QM      P E T   VI++ +       G ++H   VK GFDS   VG 
Sbjct: 141 RPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGS 200

Query: 171 ALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
           AL++ Y +   G  ++  ++   F  L+SR    WN+LI+   +   +EK+ ELF+ M  
Sbjct: 201 ALLDLYTRY--GLMDDAQLV---FDALESRNDVSWNALIAGHARRSGTEKALELFQGMLR 255

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           +G      +  +L  +      LE G+ VH   + S           LL MY+K  S+ D
Sbjct: 256 DGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHD 315

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A+ +FD+++ +D V WN +++AY Q GF KE++     M R G R +  + ++ +++ S 
Sbjct: 316 ARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSH 375

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSS 405
              ++ G   +  + ++G   +   + +++D+     DLN A +  + +  + T   W +
Sbjct: 376 SGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKA 435

Query: 406 MIKGYVTHDQS 416
           ++     H  +
Sbjct: 436 LLNACRMHKNT 446


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 210/690 (30%), Positives = 357/690 (51%), Gaps = 54/690 (7%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y+   GL   + ++S+L D Y   G+L  +++VF
Sbjct: 129 NFVVPNVCKACGALQWRGFGRGVHG-YVAKSGLDDCVFVASSLADMYGKCGVLDDARKVF 187

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N + +  ++    + G  E+ + +   M  + + P   T    + + + +    
Sbjct: 188 DEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVE 247

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  V  G +  + +G +++ FY K  G  E  + +  R        WN LIS  
Sbjct: 248 EGKQSHALAVVNGLELDNILGTSVLNFYCKV-GLVEYAEMVFDRMVGKDVVTWNLLISGY 306

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  E +  + KLMR+E  +FD  TL  L+ +    ++ +LG+ V C  +   F  D+
Sbjct: 307 VQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDI 366

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + +  + MY+K  S+ DAK +FD    KD ++WN +++AY +SG   E+L L   M   
Sbjct: 367 VLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLE 426

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
               ++ T    + S+                LRNG                    ++ A
Sbjct: 427 SVPPNVITWNLIILSL----------------LRNGQ-------------------VDEA 451

Query: 389 RKIFDSVKTK----TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +K+F  +++     T+VSW++M+ G V +  S EA+    +M+  G+  +  +I   L A
Sbjct: 452 KKMFLQMQSSGIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSA 511

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           C N+ +L   + +HGY ++  L+S S S+ T++   YAKCG I  A ++F  +     ++
Sbjct: 512 CANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFS--EL 569

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
             +N+MISAYA +G+  +   LY  +    ++PD ITF  +L+AC +AG + +   IF +
Sbjct: 570 PLYNAMISAYALYGNVEEAMALYRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSD 629

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M   +G +P  EHY  MV+LL  AG  ++A  L+++MP++PDAR+   LL+ C    +TE
Sbjct: 630 MVSKHGVKPCLEHYGLMVDLLASAGETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTE 689

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           L E  +++L+  EP+N+GNYV +SN YA  G W+ V KMR  ++ +GLKK PGCSWI + 
Sbjct: 690 LVEYLSKQLLESEPDNSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKQPGCSWIRVK 749

Query: 684 K----LVHEFWAADQSHPQADAIYTILGIL 709
           +     V  F A D++H + + I  +L +L
Sbjct: 750 REEEEEVQVFVANDKTHLRNNEIRRMLALL 779



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 139/516 (26%), Positives = 261/516 (50%), Gaps = 9/516 (1%)

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FD 163
           L K GE ++ L +  +M  +++    + Y  +++ C    DF +G++IHA+++K G  + 
Sbjct: 1   LCKNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYA 60

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
             + +   LV FY KCD     E    + + +++ S W ++I +  + G  E +   F  
Sbjct: 61  KNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFS-WAAIIGVKCRMGLVEGALMGFVE 119

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M  +    D+  + N+ ++   L+    GR VH     S     + V ++L  MY K   
Sbjct: 120 MLKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGV 179

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L+DA+ +FD++ +++ V WN ++  Y Q+G  +E++ L+  M   G      T    +S+
Sbjct: 180 LDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSA 239

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            + M  +E GKQ HA  + NG +    +  S+++ YC+   +  A  +FD +  K VV+W
Sbjct: 240 SANMGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTW 299

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           + +I GYV      +A+R+   M+LE ++ D VT+  ++         +  K +  Y ++
Sbjct: 300 NLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIR 359

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
               S   + +     YAKCG I  A ++FD      KD+I WN++++AYA+ G   +  
Sbjct: 360 HSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTV--QKDLILWNTLLAAYAESGLSGEAL 417

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           +L+ +M+   V P++IT+  ++ + +  G V+E + +F +M+ S G  P+   + +M+N 
Sbjct: 418 RLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSS-GIVPTIVSWTTMMNG 476

Query: 584 LGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
           L + G  +EA   ++ M     +P+       LSAC
Sbjct: 477 LVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSAC 512


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/480 (36%), Positives = 273/480 (56%), Gaps = 45/480 (9%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-------ADLFTAIA 339
           A  +F ++ D +  + N MI AY Q+   ++++ + + M+R            D FT   
Sbjct: 65  AARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF 124

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD------ 393
            + +      +E GKQ+H +V+R+G D    V NSLI+MY    DL  A K+FD      
Sbjct: 125 LLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD 184

Query: 394 -------------------------SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
                                    S+  KT+V+W++M+ GY T      A+  F  M+ 
Sbjct: 185 VVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQT 244

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           EG E D V+I+ +LPAC  +GALE  ++++ Y  + G+ + + +  A+   YAKCGCI+ 
Sbjct: 245 EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQ 304

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTA 547
           A +LFD   +  KD+I+W+++I   A HG   +   L+T+M K+  VRP++ITF+GLL+A
Sbjct: 305 ALQLFD--GMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSA 362

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C  AGLV+EG   F  M + YG EP  EHY  +V+LLGR+G +  A +LV+DMP   DA+
Sbjct: 363 CSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAK 422

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VWG LLSAC+ H + + A L AE+L+ +EP++ GN V+L+N+YAAA +W+ VA  R  +R
Sbjct: 423 VWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIR 482

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
            R ++KTPGCS IE+G +V EF A +    +   +  +L IL   +     +  E++ F+
Sbjct: 483 SRSMRKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHLA----DDEEDIDFA 538



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 209/493 (42%), Gaps = 90/493 (18%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           L  C   + L ++H   + L  + Q+  L++ ++        ++ + +VF  +  PN  L
Sbjct: 21  LRACVTFRDLLRVHGHVVRLR-ISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHL 79

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-------TYPFVIRSCSCLLDFISGE 151
           +  ++K  ++  ++   + VY +M      P +        TYPF++++C        G+
Sbjct: 80  HNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGK 139

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H  VV+ G                 CD        ++Q          NSLI +  + 
Sbjct: 140 QVHTHVVRSG-----------------CD-----SSAIVQ----------NSLIEMYTRA 167

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G    + ++F  MR                                        +D+   
Sbjct: 168 GDLALAHKVFDEMRE---------------------------------------RDVVSW 188

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             L+S +++L  +  A  LF+ M DK  V W  M+S Y   G    +++    M   GF 
Sbjct: 189 NMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFE 248

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  + +A + + + +  +E G+ ++A   R+G      + N+L++MY +C  ++ A ++
Sbjct: 249 PDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQL 308

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIG- 449
           FD +  K V+SWS++I G   H ++ EA+ LF+EM+ EG V  + +T + +L AC   G 
Sbjct: 309 FDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGL 368

Query: 450 ---ALEHVKYLHG-YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
               L H   ++  Y ++ G+     V   +     + G I  A +L  +  + + D   
Sbjct: 369 VDEGLSHFDRMNDVYGVEPGVEHYGCVVDLL----GRSGQIRRALDLVRDMPVPA-DAKV 423

Query: 506 WNSMISAYAKHGD 518
           W S++SA   HGD
Sbjct: 424 WGSLLSACRSHGD 436


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 203/663 (30%), Positives = 337/663 (50%), Gaps = 53/663 (7%)

Query: 58  LHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT----SPNSLLYGTILKNLSKFGEYE 113
           L G+  +LI  S L+  +A  G + L+ +    +      P    +  I+    + G  E
Sbjct: 277 LDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLE 336

Query: 114 KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173
             L ++ +M      P   T   ++ +C+ L     G+ IH    K G      V  +++
Sbjct: 337 DALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVI 396

Query: 174 EFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233
           + Y KC G ++  + +  +      + WN +I+  V  GK E +  L + M+ +G + D 
Sbjct: 397 DMYSKC-GSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPD- 454

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
                               ++    ++S   ++  + T    + S++           +
Sbjct: 455 --------------------VITYNTILSGHARN-GLKTQAXELLSEMV----------Q 483

Query: 294 MSDKDRVV-WNIMISAYYQSGFPKESLELLMCM------------VRSGFRADLFTAIAA 340
           M  K  VV +N++IS + QSG   E+L++   M            +    R +  T   A
Sbjct: 484 MGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGA 543

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + + +     GK++H   LRNG +  + V ++L+DMY +C D++ A K+F  +  +  
Sbjct: 544 LPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNT 603

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSW++++ GY+ + Q  EAL+LF EM  EG++   +T + + PAC +I A+   + LHGY
Sbjct: 604 VSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGY 663

Query: 461 SMKLGLNSL-SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
           + K  L+ L +++ +A+   YAKCG I  A  +FD E    KD+  WN+MISA++ HG  
Sbjct: 664 AAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEV--EKDVPLWNAMISAFSVHGMA 721

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
              F ++ QM+   + PD ITF+ LL+AC   GLVEEG   F  M+ SYG   + EHY  
Sbjct: 722 RNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTC 781

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           MV +LG AG +DEA + ++ MP+ PDA +W  LL AC++HS  E+ E  A+ L  +EP+N
Sbjct: 782 MVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDN 841

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
           A NY+LLSNIY ++G W+    +R+F+R R L     CS++ +G     F   + SHP+ 
Sbjct: 842 ATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHXCTFKGGESSHPEL 901

Query: 700 DAI 702
           + I
Sbjct: 902 EEI 904



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 211/471 (44%), Gaps = 38/471 (8%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSF-DDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           ++  CS L +F    +IHA+VVKL    +   +G+ LV  Y K     E+ + ++     
Sbjct: 89  LLNRCSTLSEF---RQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPN 145

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
                + +LI    ++ + ++ F  F+LM  EG   D   +  +L++   +    +G++V
Sbjct: 146 RTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMV 205

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +      D+ V  AL+  YS    L  ++ +F  M ++D V W  +ISAY + G  
Sbjct: 206 HGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLX 265

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
            E+  +   M   G + DL +  A +S  +                RNG           
Sbjct: 266 DEAKHIFHLMQLDGVKPDLISWSALLSGFA----------------RNGE---------- 299

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           ID+  E  +    R +       TV SW+ +I G V +    +AL +FS M     + + 
Sbjct: 300 IDLALETLEEMPERGL-----QPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNI 354

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
           +TI +ILPAC  + AL   K +H  + K G+     V  ++   Y+KCG  + A ++F  
Sbjct: 355 ITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVF-- 412

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
            K ++K+   WN MI+AY   G       L   M++   +PD+IT+  +L+     GL  
Sbjct: 413 XKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKT 472

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           +   +  EM +  G +P+   +  +++   ++G   EA ++ + M    D 
Sbjct: 473 QAXELLSEMVQ-MGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDG 522



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/603 (21%), Positives = 260/603 (43%), Gaps = 94/603 (15%)

Query: 33  THSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA-NLGLLSLSQQVFNSI 91
           + S SLLN C      +QIHAR + L+ L     + + L+  Y  N   L  ++++ + I
Sbjct: 84  SDSISLLNRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEI 143

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
            +     Y  ++++  +  ++++    ++ M  + M P +   P ++++CS +L    G+
Sbjct: 144 PNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGK 203

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISL 207
            +H  V++   +S   VG+AL+ FY  C      + G  +  F  ++ R    W +LIS 
Sbjct: 204 MVHGFVIRKSVESDVFVGNALIHFYSNC-----GDLGSSRSVFHSMQERDVVSWTALISA 258

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            ++ G  +++  +F LM+++G + D                     ++   A++S F ++
Sbjct: 259 YMEEGLXDEAKHIFHLMQLDGVKPD---------------------LISWSALLSGFARN 297

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
             ++ A          LE  + + ++        WN +IS   Q+G+ +++L++   M+ 
Sbjct: 298 GEIDLA----------LETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLW 347

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                ++ T  + + + + +K +  GK +H    ++G    V V  S+IDMY +C   + 
Sbjct: 348 YPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDY 407

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           A K+F   + K    W+ MI  YV   +  +AL L   M+ +G + D +T   IL     
Sbjct: 408 AEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHAR 467

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            G       L    +++GL                                   +++++N
Sbjct: 468 NGLKTQAXELLSEMVQMGLK---------------------------------PNVVSFN 494

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQS------------DVRPDLITFLGLLTACVNAGLVE 555
            +IS + + G   +  K++  M+               +RP+ IT  G L AC +  L  
Sbjct: 495 VLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWC 554

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR---VWGPL 612
           +G+ I      + G+EP+    +++V++  +   MD A ++     F+ D R    W  L
Sbjct: 555 QGKEIHGYTLRN-GFEPNIFVSSALVDMYAKCHDMDSANKVF----FRIDGRNTVSWNAL 609

Query: 613 LSA 615
           ++ 
Sbjct: 610 MAG 612



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 115/263 (43%), Gaps = 5/263 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y + +G   N+ +SS L+D YA    +  + +VF  I   N++ +  ++     
Sbjct: 557 KEIHG-YTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIN 615

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD- 167
             + E+ L ++ +M  + + P+  T+  +  +C  +     G  +H    K   D   + 
Sbjct: 616 NKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNA 675

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           +  AL++ Y KC G   + K +   + +     WN++IS    +G +  +F +F  M + 
Sbjct: 676 IXSALIDMYAKC-GSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELL 734

Query: 228 GAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           G   D  T ++LL +      +E G +  + + +       L   T ++ +      L++
Sbjct: 735 GIXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDE 794

Query: 287 AKMLFDKMS-DKDRVVWNIMISA 308
           A     +M    D  +W  ++ A
Sbjct: 795 ALDFIRQMPYPPDACMWATLLQA 817


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 174/467 (37%), Positives = 265/467 (56%), Gaps = 38/467 (8%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL+ Y++L S  DA+ +F+ + + D V W  +IS Y  +  P ++  +   +  SG R D
Sbjct: 43  LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYC----------- 380
            F  + AVS+    K++  G+ +H  V R   GSD  V   N+LIDMY            
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVG--NALIDMYSRSGAIEVACSV 160

Query: 381 --------------------ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
                               +C D+  AR+IFD +  +  VSW++MI GYV  +  +  L
Sbjct: 161 FKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGL 220

Query: 421 RLFSEMKLEGVE-VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            LF EM+ EG +    +TI+ +L  C +IGA +    +HGY  K  L+   +VN A+   
Sbjct: 221 ELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDM 280

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAK G + +A ++F E  +  +D+ +W +MIS  A HG  +   + ++ M +S V P+ +
Sbjct: 281 YAKSGALVLALKIFQE--MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEV 338

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T L +L+AC +AGLV EGR +F++M + +G +P  +HY  MV+LLGRAG + EA+EL++ 
Sbjct: 339 TLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEH 398

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPD+ +W  LLSAC +H    LAE+  + +I +EP++ G Y+LL NIY +A +W   
Sbjct: 399 MPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDA 458

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            K R  +RDR +KK PGCSW+E+  +VHEF A D  H     +YT+L
Sbjct: 459 LKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVL 505



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 181/421 (42%), Gaps = 40/421 (9%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMI 190
           T+ F+++ C  L      ++IH + V LG        +   L+  Y +     + +K   
Sbjct: 5   TFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 61

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
             +  D+ S W  LISL +   +  K+F +F  +   G   DS  ++  + +    K L 
Sbjct: 62  HIQNPDIVS-WTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLS 120

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYS------------------------------- 279
            GRIVH +    +   D  V  AL+ MYS                               
Sbjct: 121 NGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFI 180

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-ADLFTAI 338
           K   +E A+ +FD+M  ++ V W  MI+ Y Q   P   LEL   M   G     + T +
Sbjct: 181 KCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIV 240

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           A +S  + +   + G  +H  V +   D  V+V+N+L+DMY +   L  A KIF  +  +
Sbjct: 241 AVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKR 300

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            V SW++MI G   H +   AL  FS+M   GV  + VT++++L AC + G +   + L 
Sbjct: 301 DVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLF 360

Query: 459 GYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
              ++  G+         +     + G +  A EL +   I    +I W S++SA   HG
Sbjct: 361 QKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVI-WRSLLSACLVHG 419

Query: 518 D 518
           +
Sbjct: 420 N 420



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 181/413 (43%), Gaps = 36/413 (8%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGL-HQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           + LL  C + + L+QIH + + L  L  +   L+  L+++Y  LG    +Q+VFN I +P
Sbjct: 7   YFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNP 66

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + + +  ++       +  K   ++  +    + P        + +C    D  +G  +H
Sbjct: 67  DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVH 126

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFE---------------------------NEK 187
             V +    S   VG+AL++ Y +  G  E                           N+ 
Sbjct: 127 GMVFRFELGSDPIVGNALIDMYSR-SGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDI 185

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG-TLINLLRS 242
              +R F ++  R    W ++I+  VQ        ELF+ MR EG ++ +  T++ +L  
Sbjct: 186 EAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSG 245

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             ++ + +LG  VH     ++   D++VN AL+ MY+K  +L  A  +F +M  +D   W
Sbjct: 246 CADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSW 305

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
             MIS     G    +LE    M +SG   +  T ++ +S+ S    +  G+ +   +++
Sbjct: 306 TTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQ 365

Query: 363 -NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
            +G   ++  +  ++D+      L  A+++ + +  K   V W S++   + H
Sbjct: 366 CHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVH 418



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 449 GALEHVKYLHGYSMKLGL--NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           G+LE +K +HG ++ LGL  +    +   +  +Y + G    A ++F+   I + DI++W
Sbjct: 14  GSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNH--IQNPDIVSW 71

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-K 565
             +IS Y       + F +++ +  S +RPD    +G ++AC +   +  GRI+   + +
Sbjct: 72  TCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFR 131

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              G +P   +  +++++  R+G ++ A  + K M  K D   W  LL+ 
Sbjct: 132 FELGSDPIVGN--ALIDMYSRSGAIEVACSVFKTMEIK-DVSSWTSLLNG 178


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 273/466 (58%), Gaps = 3/466 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +L+ +    +SL+  R +H     S F   + ++ +L+ +Y K  ++ DA+ +FD M  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D   W  +I+ Y Q+  P E+L LL  M+R  F+ + FT  + + +     +   G+Q+H
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++      V V ++L+DMY  C  ++ A  +FD +++K  VSW+++I G+       
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
             L +F+EM+  G E    T  ++  A   IGALE  K++H + +K G    + V   I 
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G +  A ++FD  ++D KD++TWNSM++A+A++G   +    + +M++  V  +
Sbjct: 309 DMYAKSGSMIDARKVFD--RVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITFL +LTAC + GLV+EG+  F  MKE Y  EP  +HY ++V+LLGRAG +++A   +
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
             MP KP A VWG LL +C+MH   ++ +  A+ +  ++P++ G  VLL NIYA+ G+W+
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
             A++R  ++  G+KK P CSW+EI   VH F A D +HP+++ IY
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIY 531



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 167/322 (51%), Gaps = 1/322 (0%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +I +C+          IHA +    F     + ++L+  Y KC    +  +      
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            +D+ S W SLI+   QN   +++  L   M     + +  T  +LL++     S  +G 
Sbjct: 127 ARDMCS-WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H + V  D+  D+ V +ALL MY++   ++ A  +FD++  K+ V WN +I+ + + G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             + +L +   M R+GF A  FT  +  S+I+ +  +E GK +HA+++++G      V N
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 305

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +++DMY +   +  ARK+FD V  K VV+W+SM+  +  +    EA+  F EM+  GV +
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 365

Query: 434 DFVTIINILPACVNIGALEHVK 455
           + +T ++IL AC + G ++  K
Sbjct: 366 NQITFLSILTACSHGGLVKEGK 387



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 176/389 (45%), Gaps = 16/389 (4%)

Query: 37  SLLNLCENPQHLQQIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           SL+  C   + L    A +  L G     ++ L ++LI  Y   G ++ +++VF+ + + 
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +   + +++   ++    ++ L +   M      P   T+  ++++         GE+IH
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 155 AQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           A  VK  +D  DDV  G AL++ Y +C         M    F  L+S+    WN+LI+  
Sbjct: 189 ALTVK--YDWHDDVYVGSALLDMYARC-----GRMDMAIAVFDQLESKNGVSWNALIAGF 241

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            + G  E +  +F  M+  G E    T  ++  +   + +LE G+ VH   + S      
Sbjct: 242 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V   +L MY+K  S+ DA+ +FD++  KD V WN M++A+ Q G  +E++     M + 
Sbjct: 302 FVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKC 361

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   +  T ++ +++ S    ++ GKQ    +     + ++  + +++D+      LN A
Sbjct: 362 GVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421

Query: 389 RK-IFDSVKTKTVVSWSSMIKGYVTHDQS 416
              IF      T   W +++     H  +
Sbjct: 422 LVFIFKMPMKPTAAVWGALLGSCRMHKNA 450


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 297/569 (52%), Gaps = 43/569 (7%)

Query: 118  VYKQMALQSMY-PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
            VY+ ++    +  + DTY   I   +       G  +HA +V +G          L+ FY
Sbjct: 789  VYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFY 848

Query: 177  IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
             +C G   N + +  +       RW  L     + G  E++   F  M+ EG   +   L
Sbjct: 849  TEC-GQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 907

Query: 237  INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
             ++L++   L     G  +H V + + F  D  + +AL+ MYSK   +E A  +FD + D
Sbjct: 908  PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 967

Query: 297  KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
            KD VV N M+S Y Q GF  E+L+L+  M ++G + ++               + W    
Sbjct: 968  KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNV---------------VSW---- 1008

Query: 357  HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK----TVVSWSSMIKGYVT 412
                            N+LI  + +  D +   ++F  +        VVSW+S+I G+V 
Sbjct: 1009 ----------------NTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQ 1052

Query: 413  HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
            +  + E    F EM  +G     VTI ++LPAC N+  L H K +HGY+M +G+     V
Sbjct: 1053 NFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYV 1112

Query: 473  NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
             +A+   YAKCG I  A  LF    +  ++ +TWNS+I  YA HG  ++  +L+ QM++S
Sbjct: 1113 RSALVDMYAKCGYISEAKILF--YMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEES 1170

Query: 533  DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            D + D +TF  +L AC +AG+VE G  +F +M+E Y  EP  EHYA MV+LLGRAG + E
Sbjct: 1171 DTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSE 1230

Query: 593  ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
            A +L+K MP +PD  VWG LL AC+ H   ELAE+ AE L  +EPE+ G+ +LLSN+YA 
Sbjct: 1231 AYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYAD 1290

Query: 653  AGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            AG+W   AKM+  ++ R   K PGCSWIE
Sbjct: 1291 AGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  322 bits (824), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 178/569 (31%), Positives = 316/569 (55%), Gaps = 8/569 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL-KSRWNSLISLA 208
           G + H  VVK+G  S + V  +L++ Y KC  G  +    +  K   L  +  N LIS  
Sbjct: 132 GRRWHCFVVKIGLGSDEFVCTSLIDMYAKC--GEVDSAVRVYDKMTSLDAATCNCLISAY 189

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            +NG   ++F++F  +   G   +  T   +L     + +++ G+ +H   V   +  + 
Sbjct: 190 ARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSET 249

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           +V  ALL++YSK   +E+A+++F+ +  ++ + W   I+ +YQ G  K++L+    M  S
Sbjct: 250 AVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRES 309

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   + FT    ++S   +K+   G+  H  V++ G    V V  ++IDMY    +++ A
Sbjct: 310 GIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEA 369

Query: 389 RKIFDSV-KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
            K F  + +  + VSW+++I GYV +++  +A+  F  M  E V  +  T  NI  AC +
Sbjct: 370 EKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSS 429

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
             +L     +H   +K  + S   V +++  +Y +CG +E A ++F +  I   D+++WN
Sbjct: 430 FPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQ--ISDADVVSWN 487

Query: 508 SMISAYAKHGD-WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           S+I AY+++GD W   F L   +++ + +P   TFL +L+AC ++GLV+EG+  FK M +
Sbjct: 488 SIIKAYSQNGDPWKAIFLLRKMIEEGN-KPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQ 546

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            Y  +P + H + MV++LGRAG ++ A + +K +  KP A +W PLL+AC+ +S  ++AE
Sbjct: 547 DYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAE 606

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
             AEK++ +EP +A  YV LSN+YA  G+W      R  +  + + K PGCSWIE+   +
Sbjct: 607 YVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKM 666

Query: 687 HEFWAADQSHPQADAIYTILGILELEIME 715
           ++F++ D++HP+   +Y  L  L  +I +
Sbjct: 667 YKFFSHDKAHPEMPKVYEKLKQLVRQIQD 695



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 218/449 (48%), Gaps = 21/449 (4%)

Query: 12  QSGHVKFLR-FPANQTRPHMTATHSFSLLNLC--ENPQHLQQIHARYIILHGLHQNLILS 68
           ++ HV+F   FP  Q        + FS L+ C  E    L +    +++  GL  +  + 
Sbjct: 100 ETPHVEFGGGFPHRQ--------YVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVC 151

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           ++LID YA  G +  + +V++ +TS ++     ++   ++ G + +   V+ Q+      
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR 211

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   TY  ++  C  +     G+++HA VVK+ + S   VG+AL+  Y KC  G   E  
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKC--GMMEEAE 269

Query: 189 MIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           ++   F+ L+ R    W + I+   Q+G  +K+ + F +MR  G E +  T   +L S  
Sbjct: 270 IV---FESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCG 326

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWN 303
            +K    GR+ H   +       + V TA++ MYS L  +++A+  F +M      V WN
Sbjct: 327 CVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWN 386

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            +I+ Y  +   ++++E    MV+     + FT      + S+  ++    Q+H+ ++++
Sbjct: 387 ALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS 446

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
             +  + V +SLI+ Y +C  L  A ++F  +    VVSW+S+IK Y  +    +A+ L 
Sbjct: 447 NVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLL 506

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALE 452
            +M  EG +    T + +L AC + G ++
Sbjct: 507 RKMIEEGNKPTSXTFLTVLSACSHSGLVQ 535



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 175/366 (47%), Gaps = 9/366 (2%)

Query: 18  FLRFPANQTRP-HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYA 76
           F++     TRP H T +   ++       Q  +Q+HA  + +  L +  +  + L+  Y+
Sbjct: 202 FMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAV-GNALLTLYS 260

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
             G++  ++ VF S+   N + +   +    + G+++K L  +  M    + P E T+  
Sbjct: 261 KCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSI 320

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           V+ SC C+ DFI G   H QV+K G  S   VG A+++ Y       E EK   Q     
Sbjct: 321 VLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAA 380

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
               WN+LI+  V N K EK+ E F  M  E    +  T  N+ ++     SL     +H
Sbjct: 381 SNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIH 440

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              + S+   +L V ++L+  Y++  SLE+A  +F ++SD D V WN +I AY Q+G P 
Sbjct: 441 SRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPW 500

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           +++ LL  M+  G +    T +  +S+ S    ++ G++   ++++   DY +       
Sbjct: 501 KAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQ---DYSIQPE---- 553

Query: 377 DMYCEC 382
           + +C C
Sbjct: 554 ETHCSC 559



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 159/300 (53%), Gaps = 1/300 (0%)

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           +ELGR  HC  V      D  V T+L+ MY+K   ++ A  ++DKM+  D    N +ISA
Sbjct: 129 VELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISA 188

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y ++GF  ++ ++ M +   G R + +T    ++   T+  I+ GKQ+HA+V++     +
Sbjct: 189 YARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSE 248

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
            +V N+L+ +Y +C  +  A  +F+S++ + ++SW++ I G+  H    +AL+ FS M+ 
Sbjct: 249 TAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRE 308

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
            G+E +  T   +L +C  +      +  H   +K G+ S   V TAI   Y+  G ++ 
Sbjct: 309 SGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDE 368

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A + F +    + + ++WN++I+ Y  +    +  + + +M + DV  +  T+  +  AC
Sbjct: 369 AEKQFKQMGRAASN-VSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKAC 427



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 162/377 (42%), Gaps = 70/377 (18%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            + +HA  +I+ GL +    ++ L+  Y   G LS ++++F+ I + N   +  +    ++
Sbjct: 823  RALHAHLVII-GLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 881

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             G YE+ L  + +M  + + P +   P ++++C  L D  +GE +H  ++K  F+S   +
Sbjct: 882  RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYI 941

Query: 169  GDALVEFYIKC-----------------------------DGGFENE-----KGMIQRKF 194
              AL+  Y KC                               GF +E     + M Q   
Sbjct: 942  ISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGV 1001

Query: 195  KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD---------------------- 232
            K     WN+LI+   Q G      E+F+LM   G E D                      
Sbjct: 1002 KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFD 1061

Query: 233  -------------SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
                         S T+ +LL +   + +L  G+ +H  A+V    KD+ V +AL+ MY+
Sbjct: 1062 AFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYA 1121

Query: 280  KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
            K   + +AK+LF  M +++ V WN +I  Y   G+  E++EL   M  S  + D  T  A
Sbjct: 1122 KCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 1181

Query: 340  AVSSISTMKNIEWGKQM 356
             +++ S    +E G+ +
Sbjct: 1182 VLNACSHAGMVELGESL 1198



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHD--QSLEALRLFSEMKLEGVEVD-----FV 436
           DLN A  +F+    +  VS +   +   T D  + ++    F+  +   VE         
Sbjct: 55  DLNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPHRQ 114

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
            + + L  C   G +E  +  H + +K+GL S   V T++   YAKCG ++ A  ++D  
Sbjct: 115 YVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYD-- 172

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K+ S D  T N +ISAYA++G + Q F+++ Q+     RP+  T+  +L  C     ++E
Sbjct: 173 KMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQE 232

Query: 557 GRIIFKE-MKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           G+ +    +K  Y  E +  +  +++ L  + G M+EA
Sbjct: 233 GKQLHAHVVKMQYLSETAVGN--ALLTLYSKCGMMEEA 268



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 94/209 (44%), Gaps = 35/209 (16%)

Query: 37   SLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            SLL  C N    +H ++IH  Y ++ G+ +++ + S L+D YA  G +S ++ +F  +  
Sbjct: 1080 SLLPACTNVANLRHGKEIHG-YAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPE 1138

Query: 94   PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             N++ + +++   +  G   + + ++ QM          T+  V+ +CS           
Sbjct: 1139 RNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACS----------- 1187

Query: 154  HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
            HA +V+LG   F  +                 EK  I+ + +     +  ++ L  + GK
Sbjct: 1188 HAGMVELGESLFXKM----------------QEKYRIEPRLE----HYACMVDLLGRAGK 1227

Query: 214  SEKSFELFKLMRMEGAEFDSGTLINLLRS 242
              ++++L K M +E  +F  G L+   R+
Sbjct: 1228 LSEAYDLIKAMPVEPDKFVWGALLGACRN 1256


>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 726

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 210/673 (31%), Positives = 358/673 (53%), Gaps = 24/673 (3%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLIL-SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG 100
           C++ + L+QIHA  ++  G ++++   S+ LI  Y+    L  +  VF+ +  PN+L + 
Sbjct: 38  CKDLRTLKQIHASLLVSTGFNESISFPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWN 97

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL-DFISGEKIHAQVVK 159
            I++    FG   + LL+YK+M    +     T+P + R+   L  D + G+ +H   +K
Sbjct: 98  LIMRTHLDFGLVTEALLLYKKMRESGVKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMK 157

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
           LGF       + ++E Y +C   +       +   +DL S W S+IS  V  G    +FE
Sbjct: 158 LGFGYDLYFCNTMIEVYARCGCVYYGRVMFDEMSPRDLVS-WTSMISGYVSEGNVFSAFE 216

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  MR+E  E +S TLI +L+      +   GR +HC  + +      SV  ++L MYS
Sbjct: 217 LFNKMRLE-MEPNSVTLIVMLKGCYAYDNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYS 275

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC---MVRSGFRADLFT 336
              S ++ + LF ++  +D + WN +I  Y   G  +E    ++C    +R        T
Sbjct: 276 ITGSAKEVESLFVEIYRRDVISWNTLIGFYALRGDAEE----MVCGFNQMRGEVALSSET 331

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
               +S  + + N+  G+++H+  ++ G    V +  SL+D Y +C +L  + ++F  + 
Sbjct: 332 LTLVISVFAKIGNLVEGEKLHSFSIKVGLCDDVLL-ASLLDFYAKCGELRNSVQLFGEIP 390

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            ++  +W  M+ G + +    EA+ LF +M+  GV++    + +++ AC ++G+L+  K 
Sbjct: 391 CRSSSTWKLMMSGCIQNGYFDEAIHLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKE 450

Query: 457 LHGYSMKLGLNSLSSVN----TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
           +HGY  +     L   N    T+I   Y +CG I  A E F+  ++ +KD ITW SMI  
Sbjct: 451 IHGYLTRNFFYILEGDNIHLGTSILNMYIRCGSISSAREYFN--RMVAKDNITWTSMIEG 508

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y  HG   +  KL+ QM    V P+ +TFL LL+AC ++GL+ +G  +F  MK  +G EP
Sbjct: 509 YGIHGMAIEALKLFNQMLVERVLPNRVTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEP 568

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             +HY  MV+LLGR G + EA  ++  M    D+R+WG L+++C++H + ++ E  A++L
Sbjct: 569 DLDHYTCMVDLLGRCGKIKEALAMIIRMVVVADSRIWGALVASCRVHGDKKVGEFAAQRL 628

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK-----LVH 687
           + ME +N G Y LLSNI A  GKW+ V ++R  + ++ L+KTPG S I +GK      + 
Sbjct: 629 LEMESDNVGYYTLLSNIQAMVGKWDEVEQVRKVIHEKDLRKTPGWSCI-VGKGRNYCFIS 687

Query: 688 EFWAADQSHPQAD 700
           E  + ++   QAD
Sbjct: 688 EGLSDNRLTTQAD 700


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 300/543 (55%), Gaps = 36/543 (6%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNSLI     +G  + S  L+  M     +  + T   +L++   L S+  G  +H   +
Sbjct: 61  WNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVL 120

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  DL V  +L+ MY K   L+ A+  +D M  +D V WN +IS Y Q G  +++ +
Sbjct: 121 RLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARD 180

Query: 321 LL--MCMVR----------------------SGFRADLFTA----------IAAVSSIST 346
           L   M M R                      S FR  L +A          +  +S+ ST
Sbjct: 181 LFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACST 240

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
           + N E G+ +   +  N       +  +LIDMY +C D+  A +IFD V  K + SW+++
Sbjct: 241 LCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAI 300

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I G V      EA+ L+  MK + V+ + +T++N+L AC  +GALE  + +H Y  + GL
Sbjct: 301 ITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGL 360

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +    + TA+   YAKCG I+ A  +F   K   KD+  WN+MI   A HGD      ++
Sbjct: 361 DLNVILATALVDMYAKCGKIDDACLIF--VKTSEKDVALWNAMILGLAYHGDGRDSLAVF 418

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
           +QM ++ V+P+ +TF+G+L+AC ++GLVEEGR+ F  M + +G  P  EHYA MV+LLGR
Sbjct: 419 SQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGR 478

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AGH+ EA ELV++M   PD+ +WG LLSAC++H   ELA+  +E +++ +  N G  +LL
Sbjct: 479 AGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILL 538

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SNIYA++G+W  VA++R  ++++ +KK  GCSW+E+  +VH F   D +H ++  IY   
Sbjct: 539 SNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYGAY 598

Query: 707 GIL 709
            IL
Sbjct: 599 EIL 601



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 149/521 (28%), Positives = 251/521 (48%), Gaps = 52/521 (9%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
            SLL    +   + QIHA+ +I HGL     L ++LI    +L  +  ++ V +   SP 
Sbjct: 3   LSLLRTATSLTQIHQIHAQTLI-HGLP----LQTHLIPKLIDLHSIDYARFVLDQTPSPT 57

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
              + ++++  +  G  + +L +Y +M   S  P+  T+PFV+++CS L   + GE+IH 
Sbjct: 58  DFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT 117

Query: 156 QVVKLGFDSFDDVGDALVEFYIKC-----DGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
            V++LGF S   V ++L++ Y KC        F ++ G     F+D  S WNS+IS  VQ
Sbjct: 118 HVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMG-----FRDEVS-WNSIISGYVQ 171

Query: 211 NGKSEKSFELFKLMRME-------------GAEFD---------------------SGTL 236
            G+ EK+ +LF+ M M              G E D                     + T+
Sbjct: 172 WGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATM 231

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           + LL +   L + E+GR +     V+    +  + TAL+ MYSK   +E A  +FD +S 
Sbjct: 232 VCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSC 291

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           K+   WN +I+   Q G  +E+++L   M     + +  T +  +S+ + +  +E G+++
Sbjct: 292 KNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREV 351

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H  + RNG D  V +  +L+DMY +C  ++ A  IF     K V  W++MI G   H   
Sbjct: 352 HLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDG 411

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHGYSMKLGLNSLSSVNTA 475
            ++L +FS+M   GV+ + VT I +L AC + G +E  +      + K GL+        
Sbjct: 412 RDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYAC 471

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +     + G ++ A EL     I   D I W +++SA   H
Sbjct: 472 MVDLLGRAGHLKEAYELVQNMLI-PPDSIIWGALLSACRIH 511



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 203/422 (48%), Gaps = 49/422 (11%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L++LLR+   L  +     +H   ++      L + T L+     L S++ A+ + D+  
Sbjct: 2   LLSLLRTATSLTQIHQ---IHAQTLI----HGLPLQTHLIPKLIDLHSIDYARFVLDQTP 54

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
                 WN +I AY   G P+ SL L + M+RS  +   FT    + + ST+ ++  G+Q
Sbjct: 55  SPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQ 114

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H +VLR G    + V NSLIDMYC+C  L+ AR  +D +  +  VSW+S+I GYV   Q
Sbjct: 115 IHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQ 174

Query: 416 SLEALRLFSEMKLE-------------GVEVDFV---------------------TIINI 441
             +A  LF EM +              G E DFV                     T++ +
Sbjct: 175 VEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCL 234

Query: 442 LPACVNIGALEHVKYLHGY--SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           L AC  +   E  ++L  +    K+ LN++  + TA+   Y+KCG +E A  +FD   + 
Sbjct: 235 LSACSTLCNYEVGRFLSVFIDVNKIPLNTI--LVTALIDMYSKCGDVEKAWRIFD--GVS 290

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            K++ +WN++I+   + G   +   LY  MK   V+P+ IT + +L+AC   G +E GR 
Sbjct: 291 CKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGRE 350

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +   +  + G + +     ++V++  + G +D+A  L+     + D  +W  ++     H
Sbjct: 351 VHLYLGRN-GLDLNVILATALVDMYAKCGKIDDAC-LIFVKTSEKDVALWNAMILGLAYH 408

Query: 620 SE 621
            +
Sbjct: 409 GD 410


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 199/649 (30%), Positives = 352/649 (54%), Gaps = 12/649 (1%)

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
           L  L  +VF ++   + + + T++    K   Y + +  ++ M    + P+  ++  V  
Sbjct: 49  LSRLLHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFP 108

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           + S + DF +   ++  ++KLG +  +D  V  + +  Y +  G  +  + +     +  
Sbjct: 109 AISSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAEL-GCLDLCRKVFDSCLEKS 167

Query: 198 KSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
              WN++I   +QN    +   LF + M+ E    D  T ++ L +  +L+ L LG+ +H
Sbjct: 168 AEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMH 227

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
              + +     ++V  A+L MYS+  S++ +  +F+KM +KD V WN MIS + Q+G  +
Sbjct: 228 AFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDE 287

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E L L+  M + GF AD  T  + +S+ S ++N E GKQ HA ++R+G  +   + + LI
Sbjct: 288 EGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLI 346

Query: 377 DMYCECEDLNCARKIF--DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           DMY +   +  ++++F  ++++ +   +W+++I GY  +    +A   F  M  + +  +
Sbjct: 347 DMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPN 406

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VT+ +ILPAC ++G++   K LHG S++  L+    V TA+   Y+K G I  A  +F 
Sbjct: 407 AVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFT 466

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
           +     ++ +T+ +MI  Y +HG       L+  MK+S ++PD ITF+ +L+AC  AGLV
Sbjct: 467 QS--SERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLV 524

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA-RVWGPLL 613
           +EG  IF+ MK  +  +PS  HY  + ++LGR G + EA E VK +  +     +WG LL
Sbjct: 525 DEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLL 584

Query: 614 SACKMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
            AC++H   EL E  + +L+ M   +  AG  VLLSN+YA    W  V K+R  +R++GL
Sbjct: 585 GACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGL 644

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRES 720
           +K  GCSWI+ G L+  F + D+ H + + IY +L  L +E+ +   +S
Sbjct: 645 RKEVGCSWIDTGGLLVRFVSKDKDHTRCEEIYEMLERLAMEMEDNDHKS 693



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 224/462 (48%), Gaps = 14/462 (3%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           +L + S+ I  YA LG L L ++VF+S    ++ ++ T++    +   + + + ++ Q A
Sbjct: 136 DLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQ-A 194

Query: 124 LQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           +++ +   D   F+  + + S L     G+++HA  +K        V +A++  Y +C+ 
Sbjct: 195 MKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNS 254

Query: 182 ---GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
               FE  + M +   KD+ S WN++IS  +QNG  E+   L   M+ +G   DS T+ +
Sbjct: 255 VQTSFEVFEKMPE---KDVVS-WNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTS 310

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF--DKMSD 296
           LL +   L++ E+G+  H   +      D  +++ L+ MY+K   +  ++ +F  + + +
Sbjct: 311 LLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGLIRISQRVFENNNIQN 369

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           +D+  WN +I+ Y Q+G  +++      M+    R +  T  + + + S++ +I  GKQ+
Sbjct: 370 RDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQL 429

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           H   +R   D  + V  +L+DMY +   +N A  +F     +  V++++MI GY  H   
Sbjct: 430 HGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMG 489

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTA 475
             AL LF  MK  G++ D +T + +L AC   G + E ++          +   ++    
Sbjct: 490 ENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCC 549

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           +     + G +  A E   +   +   I  W S++ A   HG
Sbjct: 550 VADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHG 591



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H    I + L QN+ + + L+D Y+  G ++ ++ VF   +  NS+ Y T++    +
Sbjct: 427 KQLHG-VSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQ 485

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            G  E  L ++  M    + P   T+  V+ +CS
Sbjct: 486 HGMGENALSLFHSMKKSGIQPDAITFVAVLSACS 519


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 273/466 (58%), Gaps = 3/466 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +L+ +    +SL+  R +H     S F   + ++ +L+ +Y K  ++ DA+ +FD M  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D   W  +I+ Y Q+  P E+L LL  M+R  F+ + FT  + + +     +   G+Q+H
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++      V V ++L+DMY  C  ++ A  +FD +++K  VSW+++I G+       
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
             L +F+EM+  G E    T  ++  A   IGALE  K++H + +K G    + V   I 
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G +  A ++FD  ++D KD++TWNSM++A+A++G   +    + +M++  V  +
Sbjct: 309 DMYAKSGSMIDARKVFD--RVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITFL +LTAC + GLV+EG+  F  MKE Y  EP  +HY ++V+LLGRAG +++A   +
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
             MP KP A VWG LL +C+MH   ++ +  A+ +  ++P++ G  VLL NIYA+ G+W+
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
             A++R  ++  G+KK P CSW+EI   VH F A D +HP+++ IY
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIY 531



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 169/326 (51%), Gaps = 9/326 (2%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +I +C+          IHA +    F     + ++L+  Y KC G   + +    R 
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKC-GAVADAR----RV 121

Query: 194 FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           F  + +R    W SLI+   QN   +++  L   M     + +  T  +LL++     S 
Sbjct: 122 FDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASS 181

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
            +G  +H + V  D+  D+ V +ALL MY++   ++ A  +FD++  K+ V WN +I+ +
Sbjct: 182 GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGF 241

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQV 369
            + G  + +L +   M R+GF A  FT  +  S+I+ +  +E GK +HA+++++G     
Sbjct: 242 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            V N+++DMY +   +  ARK+FD V  K VV+W+SM+  +  +    EA+  F EM+  
Sbjct: 302 FVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKC 361

Query: 430 GVEVDFVTIINILPACVNIGALEHVK 455
           GV ++ +T ++IL AC + G ++  K
Sbjct: 362 GVHLNQITFLSILTACSHGGLVKEGK 387



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 176/389 (45%), Gaps = 16/389 (4%)

Query: 37  SLLNLCENPQHLQQIHARYIILHG--LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           SL+  C   + L    A +  L G     ++ L ++LI  Y   G ++ +++VF+ + + 
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +   + +++   ++    ++ L +   M      P   T+  ++++         GE+IH
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 155 AQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLA 208
           A  VK  +D  DDV  G AL++ Y +C         M    F  L+S+    WN+LI+  
Sbjct: 189 ALTVK--YDWHDDVYVGSALLDMYARC-----GRMDMAIAVFDQLESKNGVSWNALIAGF 241

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            + G  E +  +F  M+  G E    T  ++  +   + +LE G+ VH   + S      
Sbjct: 242 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 301

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V   +L MY+K  S+ DA+ +FD++  KD V WN M++A+ Q G  +E++     M + 
Sbjct: 302 FVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKC 361

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   +  T ++ +++ S    ++ GKQ    +     + ++  + +++D+      LN A
Sbjct: 362 GVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421

Query: 389 RK-IFDSVKTKTVVSWSSMIKGYVTHDQS 416
              IF      T   W +++     H  +
Sbjct: 422 LVFIFKMPMKPTAAVWGALLGSCRMHKNA 450


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 202/672 (30%), Positives = 345/672 (51%), Gaps = 16/672 (2%)

Query: 55   YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
            +II +G   ++ ++++LI  +++   +  +  VF+ +   + + +  ++   +  G   +
Sbjct: 972  HIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRE 1031

Query: 115  TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            +L  +  M          T   ++  CS + +   G  IH  VVKLG DS   + + L+ 
Sbjct: 1032 SLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLT 1091

Query: 175  FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
             Y +     + E        +DL S WNS+++  VQ+GK     ++   +   G   +  
Sbjct: 1092 LYSEAGRSEDAELVFQAMTERDLIS-WNSMMACYVQDGKCLDGLKILAELLQMGKVMNHV 1150

Query: 235  TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            T  + L +    + L   +IVH + +V+ F   L V  AL++MY KL  + +AK +   M
Sbjct: 1151 TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210

Query: 295  SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWG 353
               DRV WN +I  + ++  P E+++    +   G  A+  T ++ + + S   ++ + G
Sbjct: 1211 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 1270

Query: 354  KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
              +HA+++  G +    V NSLI MY +C DLN +  IFD +  K+ ++W++M+     H
Sbjct: 1271 MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHH 1330

Query: 414  DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
                EAL++F EM+  GV +D  +    L A  N+  LE  + LHG  +KLG  S   V 
Sbjct: 1331 GCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 1390

Query: 474  TAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITWNSMISAYAKHGDWSQCFKLYTQM 529
             A    Y KCG      E+ D  K+  + I    ++WN +ISA+A+HG + +  + + +M
Sbjct: 1391 NAAMDMYGKCG------EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEM 1444

Query: 530  KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
             +   +PD +TF+ LL+AC + GLV+EG   +  M   +G  P  EH   +++LLGR+G 
Sbjct: 1445 LKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGR 1504

Query: 590  MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
            +  A   +K+MP  P+   W  LL+AC++H   ELA  TAE L+ ++P +   YVL SN+
Sbjct: 1505 LSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNV 1564

Query: 650  YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
             A +GKW  V  +R  +    +KK P CSW+++   VH F   ++ HPQA  I   LG  
Sbjct: 1565 CATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLG-- 1622

Query: 710  ELEIMEGRRESS 721
              E+M+  +E+ 
Sbjct: 1623 --ELMKMTKEAG 1632



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/539 (31%), Positives = 274/539 (50%), Gaps = 10/539 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLIS 206
           G  IH  ++  GF S   +   L+ FY+K            GM +R        W +++S
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVS----WTAMVS 104

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
              QNG+ EK+F LF  MR  G + +  T  + LR+   L+ L++G  V        F +
Sbjct: 105 GYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVE 164

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           +L V +AL+  +SK   +EDA  LF  M ++D V WN MI  Y   GF  +S  +   M+
Sbjct: 165 NLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSML 224

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           R G   D +T  + + + +    +    Q+H  + + G      V   LI+ Y +   L 
Sbjct: 225 RGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLR 284

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHD-QSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
            A+ +   +  K + S +++I GY      S++AL LF EM    + +D V + ++L  C
Sbjct: 285 SAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNIC 344

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
            N+ +      +H +++K   +   ++  A+   YAK G IE A   FDE  ++ K++I+
Sbjct: 345 ANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDE--MEEKNVIS 402

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           W S+IS YAKHG       LY +M+    +P+ +TFL LL AC + GL  EG   F  M 
Sbjct: 403 WTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMV 462

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             Y  +P  EHY+ MV+L  R G ++EA  L+  +  K +A +WG +L A  ++    L 
Sbjct: 463 NKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLG 522

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           +  A  L +M+PEN+ NYV+L++IY+AAG W+   K+R  + +R  KK  G S+ +  K
Sbjct: 523 KEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATK 581



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/588 (25%), Positives = 278/588 (47%), Gaps = 26/588 (4%)

Query: 49   QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
            + +HA + I+  ++  +  ++ LI+ Y+  G +  ++ VF+ +   N   + T+L    +
Sbjct: 764  KALHA-FCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 109  FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS---CLLDFISGEKIHAQVVKLGFDSF 165
             G YE+ + ++ QM    + P       +I +CS    + D   G ++H  VVK G    
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD--EGFQVHGFVVKTGILGD 880

Query: 166  DDVGDALVEFYIKCDGGFENEKGMI---QRKFKDLKSR----WNSLISLAVQNGKSEKSF 218
              VG ALV FY           G++   Q+ F+++       W SL+     +G   +  
Sbjct: 881  VYVGTALVHFY--------GSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVL 932

Query: 219  ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
             +++ MR EG   +  T   +  S   L+   LG  V    +   F   +SV  +L+SM+
Sbjct: 933  NVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMF 992

Query: 279  SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
            S  +S+E+A  +FD M++ D + WN MISAY   G  +ESL     M       +  T  
Sbjct: 993  SSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLS 1052

Query: 339  AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
            + +S  S++ N++WG+ +H  V++ G D  V + N+L+ +Y E      A  +F ++  +
Sbjct: 1053 SLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTER 1112

Query: 399  TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
             ++SW+SM+  YV   + L+ L++ +E+   G  ++ VT  + L AC N   L   K +H
Sbjct: 1113 DLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVH 1172

Query: 459  GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
               +  G +    V  A+   Y K G +  A ++   + +   D +TWN++I  +A++ +
Sbjct: 1173 ALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVL--QTMPQPDRVTWNALIGGHAENEE 1230

Query: 519  WSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
             ++  K Y  +++  +  + IT + +L AC     L++ G  I   +  + G+E      
Sbjct: 1231 PNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT-GFESDDYVK 1289

Query: 578  ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
             S++ +  + G ++ +  +   +  K     W  +++A   H   E A
Sbjct: 1290 NSLITMYAKCGDLNSSNYIFDGLGNKSPI-TWNAMVAANAHHGCGEEA 1336



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 244/522 (46%), Gaps = 10/522 (1%)

Query: 1   MLGLLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIH--ARYIIL 58
           M   +  AC+L           +N TR  +  +    +L LC + +  +Q H    ++I 
Sbjct: 1   MFSKIQSACNLGRLAEALKLLSSNPTR--LDPSLYLKILQLCIDKKAKKQGHLIHTHLIT 58

Query: 59  HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
           +G   +L L++ LI  Y  +G +  ++ VF+ +   + + +  ++   S+ G +EK  ++
Sbjct: 59  NGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVL 118

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           +  M    +   + TY   +R+C+ L     G ++   + K  F     V  ALV+F+ K
Sbjct: 119 FSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSK 178

Query: 179 CDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
           C G  E+   +     +     WN++I      G ++ SF +F+ M   G   D  TL +
Sbjct: 179 C-GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGS 237

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           +LR++ E   L +   +H +     +     V   L++ Y+K  SL  AK L   M  KD
Sbjct: 238 VLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKD 297

Query: 299 RVVWNIMISAYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
                 +I+ Y   G +  ++L+L   M +     D     + ++  + + +   G Q+H
Sbjct: 298 LFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIH 357

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  L+    Y V++ N+LIDMY +  ++  A++ FD ++ K V+SW+S+I GY  H    
Sbjct: 358 AFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGH 417

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAI 476
            A+ L+ +M+ +G + + VT +++L AC + G   E  +  +    K  +   +   + +
Sbjct: 418 MAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCM 477

Query: 477 FISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHG 517
              +A+ G +E A  L    KID K +   W +++ A + +G
Sbjct: 478 VDLFARQGLLEEAYNLLC--KIDIKHNASLWGAILGASSIYG 517



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 197/410 (48%), Gaps = 9/410 (2%)

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
           E  KL+       D    + +L+  ++ K+ + G ++H   + + F  DL +NT L+  Y
Sbjct: 16  EALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFY 75

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
            K+  +  A+ +FD M ++  V W  M+S Y Q+G  +++  L   M   G +A+ FT  
Sbjct: 76  VKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYG 135

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           +A+ + ++++ ++ G Q+   + +      + V ++L+D + +C  +  A  +F ++  +
Sbjct: 136 SALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMER 195

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            VVSW++MI GY     + ++  +F  M   G+  D  T+ ++L A    G L     +H
Sbjct: 196 DVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIH 255

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           G   +LG  S   V   +  +YAK G +  A +L   + +  KD+ +  ++I+ YA  G 
Sbjct: 256 GIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDL--RKGMLKKDLFSSTALITGYAHEGI 313

Query: 519 WS-QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-- 575
           +S     L+ +M Q ++  D +    +L  C N      G  I      +  Y+PS +  
Sbjct: 314 YSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIH---AFALKYQPSYDVA 370

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
              +++++  ++G +++A+    +M  K +   W  L+S    H    +A
Sbjct: 371 MGNALIDMYAKSGEIEDAKRAFDEMEEK-NVISWTSLISGYAKHGYGHMA 419



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 9/296 (3%)

Query: 240  LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
            L+   E+ S   G+ +H   +V      +     L++MYSK  ++E A+ +FD+M  ++ 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 300  VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWGKQMHA 358
              W+ M+S Y + G  +E++ L   M   G   + F   + +++ S    + + G Q+H 
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 359  NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
             V++ G    V V  +L+  Y     +  A+K+F+ +    VVSW+S++ GY       E
Sbjct: 871  FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 930

Query: 419  ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH--VKY-LHGYSMKLGLNSLSSVNTA 475
             L ++  M+ EGV  +  T   +  +C   G LE   + Y + G+ ++ G     SV  +
Sbjct: 931  VLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANS 987

Query: 476  IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
            +   ++    +E A  +FD   ++  DII+WN+MISAYA HG   +  + +  M+ 
Sbjct: 988  LISMFSSFSSVEEACYVFDH--MNECDIISWNAMISAYAHHGLCRESLRCFHWMRH 1041



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 137/271 (50%), Gaps = 9/271 (3%)

Query: 353  GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
            GK +HA  +    +  +   N+LI+MY +  ++  AR +FD ++ +   SWS+M+ GYV 
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 413  HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY-LHGYSMKLGLNSLSS 471
                 EA+ LF +M   GVE +   + +++ AC   G +    + +HG+ +K G+     
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 472  VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
            V TA+   Y   G +  A +LF+E  +   ++++W S++  Y+  G+  +   +Y +M+Q
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEE--MPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 940

Query: 532  SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE--SYGYEPSQEHYASMVNLLGRAGH 589
              V  +  TF  + ++C   GL+E+  + ++ +     YG+E S     S++++      
Sbjct: 941  EGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 997

Query: 590  MDEARELVKDMPFKPDARVWGPLLSACKMHS 620
            ++EA  +   M  + D   W  ++SA   H 
Sbjct: 998  VEEACYVFDHMN-ECDIISWNAMISAYAHHG 1027


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/480 (36%), Positives = 273/480 (56%), Gaps = 45/480 (9%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-------ADLFTAIA 339
           A  +F ++ D +  + N MI AY Q+   ++++ + + M+R            D FT   
Sbjct: 65  AARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF 124

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD------ 393
            + +      +E GKQ+H +V+R+G D    V NSLI+MY    DL  A K+FD      
Sbjct: 125 LLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD 184

Query: 394 -------------------------SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
                                    S+  KT+V+W++M+ GY T      A+  F  M+ 
Sbjct: 185 VVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQT 244

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           EG E D V+I+ +LPAC  +GALE  ++++ Y  + G+ + + +  A+   YAKCGCI+ 
Sbjct: 245 EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQ 304

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTA 547
           A +LFD   +  KD+I+W+++I   A HG   +   L+T+M K+  VRP++ITF+GLL+A
Sbjct: 305 ALQLFD--GMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSA 362

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C  AGLV+EG   F  M + YG EP  EHY  +V+LLGR+G +  A +LV+DMP   DA+
Sbjct: 363 CSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAK 422

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VWG LLSAC+ H + + A L AE+L+ +EP++ GN V+L+N+YAAA +W+ VA  R  +R
Sbjct: 423 VWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIR 482

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
            R ++KTPGCS IE+G +V EF A +    +   +  +L IL   +     +  E++ F+
Sbjct: 483 SRSMRKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHLA----DDEEDIDFA 538



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 209/493 (42%), Gaps = 90/493 (18%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           L  C   + L ++H   + L  + Q+  L++ ++        ++ + +VF  +  PN  L
Sbjct: 21  LRACVTFRDLLRVHGHVVRLR-ISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHL 79

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-------TYPFVIRSCSCLLDFISGE 151
           +  ++K  ++  ++   + VY +M      P +        TYPF++++C        G+
Sbjct: 80  HNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGK 139

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H  VV+ G                 CD        ++Q          NSLI +  + 
Sbjct: 140 QVHTHVVRSG-----------------CD-----SSAIVQ----------NSLIEMYTRA 167

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G    + ++F  MR                                        +D+   
Sbjct: 168 GDLALAHKVFDEMRE---------------------------------------RDVVSW 188

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             L+S +++L  +  A  LF+ M DK  V W  M+S Y   G    +++    M   GF 
Sbjct: 189 NMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFE 248

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  + +A + + + +  +E G+ ++A   R+G      + N+L++MY +C  ++ A ++
Sbjct: 249 PDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQL 308

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIG- 449
           FD +  K V+SWS++I G   H ++ EA+ LF+EM+ EG V  + +T + +L AC   G 
Sbjct: 309 FDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGL 368

Query: 450 ---ALEHVKYLHG-YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
               L H   ++  Y ++ G+     V   +     + G I  A +L  +  + + D   
Sbjct: 369 VDEGLSHFDRMNDVYGVEPGVEHYGCVVDLL----GRSGQIRRALDLVRDMPVPA-DAKV 423

Query: 506 WNSMISAYAKHGD 518
           W S++SA   HGD
Sbjct: 424 WGSLLSACRSHGD 436


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 300/519 (57%), Gaps = 6/519 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  +I+   Q G +  + +LF  M + G   D  T  ++L +  EL  L LG+ +H   +
Sbjct: 19  WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 78

Query: 261 VSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-FPK 316
                 D+ V  +L+ MY+K A   S++D++ +F++M + + + W  +I+AY QSG   K
Sbjct: 79  RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDK 138

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E++EL   M+    R + F+  + + +   + +   G+Q+++  ++ G      V NSLI
Sbjct: 139 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLI 198

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY     +  ARK FD +  K +VS+++++ GY  + +S EA  LF+E+   G+ +   
Sbjct: 199 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 258

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T  ++L    +IGA+   + +HG  +K G  S   +  A+   Y++CG IE A ++F+E 
Sbjct: 259 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE- 317

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            ++ +++I+W SMI+ +AKHG  ++  +++ +M ++  +P+ IT++ +L+AC + G++ E
Sbjct: 318 -MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 376

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+  F  M + +G  P  EHYA MV+LLGR+G + EA E +  MP   DA VW  LL AC
Sbjct: 377 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 436

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           ++H  TEL    AE ++  EP++   Y+LLSN++A+AG+W  V K+R  +++R L K  G
Sbjct: 437 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 496

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           CSWIE+   VH F   + SHPQA  IY  L  L  +I E
Sbjct: 497 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 535



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 234/485 (48%), Gaps = 6/485 (1%)

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +VF+ +   N + +  ++   ++ G     + ++  M L    P   TY  V+ +C+ L 
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC--DGGFENEKGMIQRKFKDLKSRWNS 203
               G+++H++V++LG      VG +LV+ Y KC  DG  ++ + + ++  +     W +
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 204 LISLAVQNGKSEK-SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +I+   Q+G+ +K + ELF  M       +  +  ++L++   L     G  V+  AV  
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 185

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                  V  +L+SMY++   +EDA+  FD + +K+ V +N ++  Y ++   +E+  L 
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 245

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             +  +G     FT  + +S  +++  +  G+Q+H  +L+ G      + N+LI MY  C
Sbjct: 246 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 305

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
            ++  A ++F+ ++ + V+SW+SMI G+  H  +  AL +F +M   G + + +T + +L
Sbjct: 306 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 365

Query: 443 PACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
            AC ++G + E  K+ +    + G+         +     + G +  A E  +   + + 
Sbjct: 366 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA- 424

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D + W +++ A   HG+ ++  +   +M       D   ++ L     +AG  ++   I 
Sbjct: 425 DALVWRTLLGACRVHGN-TELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 483

Query: 562 KEMKE 566
           K MKE
Sbjct: 484 KSMKE 488



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 177/318 (55%), Gaps = 7/318 (2%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +FDKM +++ V W +MI+ + Q G  +++++L + M  SG+  D FT  + +S+ + 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE---DLNCARKIFDSVKTKTVVSW 403
           +  +  GKQ+H+ V+R G    V V  SL+DMY +C     ++ +RK+F+ +    V+SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 404 SSMIKGYVTHDQ-SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           +++I  Y    +   EA+ LF +M    +  +  +  ++L AC N+      + ++ Y++
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           KLG+ S++ V  ++   YA+ G +E A + FD   +  K+++++N+++  YAK+    + 
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFD--ILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           F L+ ++  + +     TF  LL+   + G + +G  I   + +  GY+ +Q    ++++
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYKSNQCICNALIS 300

Query: 583 LLGRAGHMDEARELVKDM 600
           +  R G+++ A ++  +M
Sbjct: 301 MYSRCGNIEAAFQVFNEM 318



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 166/317 (52%), Gaps = 7/317 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANL---GLLSLSQQVFNSITSPNSLLYGTILKN 105
           +Q+H+R I L GL  ++ +  +L+D YA     G +  S++VF  +   N + +  I+  
Sbjct: 71  KQLHSRVIRL-GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129

Query: 106 LSKFGEYEKTLL-VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            ++ GE +K  + ++ +M    + P   ++  V+++C  L D  +GE++++  VKLG  S
Sbjct: 130 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 189

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            + VG++L+  Y +  G  E+ +      F+     +N+++    +N KSE++F LF  +
Sbjct: 190 VNCVGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 248

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
              G    + T  +LL     + ++  G  +H   +   +  +  +  AL+SMYS+  ++
Sbjct: 249 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 308

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           E A  +F++M D++ + W  MI+ + + GF   +LE+   M+ +G + +  T +A +S+ 
Sbjct: 309 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 368

Query: 345 STMKNIEWGKQMHANVL 361
           S +  I  G Q H N +
Sbjct: 369 SHVGMISEG-QKHFNSM 384


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/590 (31%), Positives = 323/590 (54%), Gaps = 7/590 (1%)

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           Q + P   ++  ++R    L D    ++IHAQ++  G      + ++L+  Y+ C G   
Sbjct: 18  QRLCPLAQSHASILRK---LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYC-GLLA 73

Query: 185 NEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           + K +           W  LIS   +N    ++ ++F+ M M   + ++ T+ ++L +  
Sbjct: 74  DAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFA 133

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            L  + + + VHC  V   F  ++ V TAL+ MYSK   +  A+ LF+ MS+++ V WN 
Sbjct: 134 NLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNA 193

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           ++S Y   GF +E+++L   M R G   D +T ++ + +  ++  ++ G  +H  ++R G
Sbjct: 194 IVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTG 253

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            +    +  +L+D+Y     ++ A ++F  +  K V +W+ M+ G+ +      A++ F+
Sbjct: 254 YENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFN 313

Query: 425 EM-KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           +M  ++ +++D + ++ IL +C + GAL+  + +H  ++K    +   V +A+   YA C
Sbjct: 314 KMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANC 373

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +E A   F    +  KD++ WN+MI+    +G  +    L+ QMK S + PD  TF+ 
Sbjct: 374 GNLEDAKRFF--YGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVS 431

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +L AC +AG+V EG  IF  M ++    P+ +HYA ++++LGRAG +D A   + +MPF+
Sbjct: 432 VLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQ 491

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           PD  V+  LL AC++H   +L    ++K+  MEP +AG YVLLSN+YA AG W GV   R
Sbjct: 492 PDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTR 551

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             LR + LKK PG S IEI + ++ F A ++ HPQ   I  IL  L L+I
Sbjct: 552 ASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKI 601



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 227/435 (52%), Gaps = 17/435 (3%)

Query: 22  PANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           P  +  P +  +H+ S+L   ++ + LQQIHA+ II  GL  N  LS++L+++Y   GLL
Sbjct: 16  PTQRLCP-LAQSHA-SILRKLKDLKPLQQIHAQ-IITSGLTHNTFLSNSLMNAYVYCGLL 72

Query: 82  SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
           + ++Q+F+     N + +  ++  L+K   + + + V+++M + +  P   T   V+ + 
Sbjct: 73  ADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAF 132

Query: 142 SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK--CDGGFENEKGMIQRKFKDLKS 199
           + L      + +H   V+ GF+    V  ALV+ Y K  C        G+ ++ F+ +  
Sbjct: 133 ANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGC-------MGVARQLFESMSE 185

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    WN+++S    +G SE++ +LF LMR +G   D  T+++L+ +++ +  L++G  +
Sbjct: 186 RNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGI 245

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   + + +  D  + TAL+ +Y     ++DA  +F +M  KD   W +M++ +      
Sbjct: 246 HGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHW 305

Query: 316 KESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             +++    M+     + D    +  +SS S    ++ G+++HA  ++      + V ++
Sbjct: 306 DRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSA 365

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           +IDMY  C +L  A++ F  +  K VV W++MI G   +    +A+ LF +MK  G++ D
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPD 425

Query: 435 FVTIINILPACVNIG 449
             T +++L AC + G
Sbjct: 426 ESTFVSVLYACSHAG 440


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 300/519 (57%), Gaps = 6/519 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W  +I+   Q G +  + +LF  M + G   D  T  ++L +  EL  L LG+ +H   +
Sbjct: 24  WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 83

Query: 261 VSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-FPK 316
                 D+ V  +L+ MY+K A   S++D++ +F++M + + + W  +I+AY QSG   K
Sbjct: 84  RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDK 143

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E++EL   M+    R + F+  + + +   + +   G+Q+++  ++ G      V NSLI
Sbjct: 144 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLI 203

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
            MY     +  ARK FD +  K +VS+++++ GY  + +S EA  LF+E+   G+ +   
Sbjct: 204 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 263

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T  ++L    +IGA+   + +HG  +K G  S   +  A+   Y++CG IE A ++F+E 
Sbjct: 264 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE- 322

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
            ++ +++I+W SMI+ +AKHG  ++  +++ +M ++  +P+ IT++ +L+AC + G++ E
Sbjct: 323 -MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 381

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           G+  F  M + +G  P  EHYA MV+LLGR+G + EA E +  MP   DA VW  LL AC
Sbjct: 382 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 441

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
           ++H  TEL    AE ++  EP++   Y+LLSN++A+AG+W  V K+R  +++R L K  G
Sbjct: 442 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 501

Query: 677 CSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           CSWIE+   VH F   + SHPQA  IY  L  L  +I E
Sbjct: 502 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 540



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 234/485 (48%), Gaps = 6/485 (1%)

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +VF+ +   N + +  ++   ++ G     + ++  M L    P   TY  V+ +C+ L 
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC--DGGFENEKGMIQRKFKDLKSRWNS 203
               G+++H++V++LG      VG +LV+ Y KC  DG  ++ + + ++  +     W +
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 204 LISLAVQNGKSEK-SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +I+   Q+G+ +K + ELF  M       +  +  ++L++   L     G  V+  AV  
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 190

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
                  V  +L+SMY++   +EDA+  FD + +K+ V +N ++  Y ++   +E+  L 
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF 250

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             +  +G     FT  + +S  +++  +  G+Q+H  +L+ G      + N+LI MY  C
Sbjct: 251 NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRC 310

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
            ++  A ++F+ ++ + V+SW+SMI G+  H  +  AL +F +M   G + + +T + +L
Sbjct: 311 GNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 370

Query: 443 PACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
            AC ++G + E  K+ +    + G+         +     + G +  A E  +   + + 
Sbjct: 371 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMA- 429

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D + W +++ A   HG+ ++  +   +M       D   ++ L     +AG  ++   I 
Sbjct: 430 DALVWRTLLGACRVHGN-TELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 488

Query: 562 KEMKE 566
           K MKE
Sbjct: 489 KSMKE 493



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 177/318 (55%), Gaps = 7/318 (2%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A  +FDKM +++ V W +MI+ + Q G  +++++L + M  SG+  D FT  + +S+ + 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE---DLNCARKIFDSVKTKTVVSW 403
           +  +  GKQ+H+ V+R G    V V  SL+DMY +C     ++ +RK+F+ +    V+SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 404 SSMIKGYVTHDQ-SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           +++I  Y    +   EA+ LF +M    +  +  +  ++L AC N+      + ++ Y++
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           KLG+ S++ V  ++   YA+ G +E A + FD   +  K+++++N+++  YAK+    + 
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFD--ILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           F L+ ++  + +     TF  LL+   + G + +G  I   + +  GY+ +Q    ++++
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYKSNQCICNALIS 305

Query: 583 LLGRAGHMDEARELVKDM 600
           +  R G+++ A ++  +M
Sbjct: 306 MYSRCGNIEAAFQVFNEM 323



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 166/317 (52%), Gaps = 7/317 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANL---GLLSLSQQVFNSITSPNSLLYGTILKN 105
           +Q+H+R I L GL  ++ +  +L+D YA     G +  S++VF  +   N + +  I+  
Sbjct: 76  KQLHSRVIRL-GLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 134

Query: 106 LSKFGEYEKTLL-VYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
            ++ GE +K  + ++ +M    + P   ++  V+++C  L D  +GE++++  VKLG  S
Sbjct: 135 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 194

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
            + VG++L+  Y +  G  E+ +      F+     +N+++    +N KSE++F LF  +
Sbjct: 195 VNCVGNSLISMYAR-SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 253

Query: 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284
              G    + T  +LL     + ++  G  +H   +   +  +  +  AL+SMYS+  ++
Sbjct: 254 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 313

Query: 285 EDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
           E A  +F++M D++ + W  MI+ + + GF   +LE+   M+ +G + +  T +A +S+ 
Sbjct: 314 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 373

Query: 345 STMKNIEWGKQMHANVL 361
           S +  I  G Q H N +
Sbjct: 374 SHVGMISEG-QKHFNSM 389


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/627 (30%), Positives = 337/627 (53%), Gaps = 2/627 (0%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           II + ++ +  L + L+ +Y++LG L  +++VF+ I  P ++L   ++    +   Y   
Sbjct: 80  IITNPIYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDC 139

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           + + K M+   +     T  F +++C  LLD+  G ++    V  G      +G +++ F
Sbjct: 140 IELLKMMSRCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNF 199

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
            +K       +    Q   KD+   WN +I   +Q G   + + LF  M     E  + T
Sbjct: 200 LVKTGDIMCAQFFFHQMVEKDVVC-WNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVT 258

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           +I+L++S  E+++L  G+ +H   +     +D  V T L+ MY K   +E A+ +F+ M 
Sbjct: 259 MISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMP 318

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            ++ V WN+MIS Y Q+G   E+L L   ++      D  T ++ +   S   +++ GK 
Sbjct: 319 SRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKI 378

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H  + R G D  + +  +++D+Y +C  L  A  +F+ +K K V+SW++M+ G   +  
Sbjct: 379 LHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGH 438

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
           + +AL+LF +M+ E V  + +T+++++  C  +G L   + +H    +    S   V TA
Sbjct: 439 ARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTA 498

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKC  I  A E+  +  +  KD+I +NSMIS Y  HG   +   +Y +M +  ++
Sbjct: 499 LIDMYAKCSKINSA-EMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQ 557

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P+  TF+ LL+AC ++GLVEEG  +F+ M + +   P+ + YA +V+LL RAG + +A E
Sbjct: 558 PNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEE 617

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
           L+  MPF P + +   LL+ C +H + EL    A++L+S+E  N   Y+ LSNIYA A +
Sbjct: 618 LINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKASR 677

Query: 656 WNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           W+ V  +R  + ++ +KK PG S IE+
Sbjct: 678 WDSVKYVRGLMMEQEIKKIPGYSSIEV 704



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 178/358 (49%), Gaps = 10/358 (2%)

Query: 11  LQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLIL 67
            + G+  FL    N+  P  +A    SL+  C   ++L   + +H  +++  G+ ++  +
Sbjct: 237 FREGYNLFLDMLYNKIEP--SAVTMISLIQSCGEMRNLTFGKCMHG-FVLGFGMSRDTRV 293

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
            + LID Y   G +  ++ +F ++ S N + +  ++    + G   +TL +++++ +  +
Sbjct: 294 LTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDV 353

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
                T   +I+ CS   D   G+ +H  + + G D    +  A+V+ Y KC G      
Sbjct: 354 GFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKC-GSLAYAS 412

Query: 188 GMIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
            + +R K K++ S W +++    QNG +  + +LF  M+ E   F++ TL++L+     L
Sbjct: 413 SVFERMKNKNVIS-WTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLL 471

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD-KMSDKDRVVWNIM 305
             L  GR VH       F  ++ V TAL+ MY+K + +  A+M+F   ++ KD +++N M
Sbjct: 472 GLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSM 531

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
           IS Y   G   ++L +   M R G + +  T ++ +S+ S    +E G  +  N++++
Sbjct: 532 ISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKD 589



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 17/268 (6%)

Query: 37  SLLNLCENPQHLQ--QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           SL+ LC     L   +I   +I   GL  NL+L + ++D YA  G L+ +  VF  + + 
Sbjct: 362 SLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNK 421

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           N + +  +L  L++ G     L ++ QM  + +     T   ++  C+ L     G  +H
Sbjct: 422 NVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVH 481

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNSLISLAVQNG 212
           A + +  F S   V  AL++ Y KC     N   M+ +     K    +NS+IS    +G
Sbjct: 482 ATLTRFHFASEVVVMTALIDMYAKCSK--INSAEMVFKYGLTPKDVILYNSMISGYGMHG 539

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN- 271
              K+  ++  M  EG + +  T ++LL +      +E G     +A+  +  KD +   
Sbjct: 540 LGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEG-----IALFQNMVKDHNTTP 594

Query: 272 -----TALLSMYSKLASLEDAKMLFDKM 294
                  ++ + S+   L  A+ L ++M
Sbjct: 595 TDKLYACIVDLLSRAGRLRQAEELINQM 622


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 211/679 (31%), Positives = 356/679 (52%), Gaps = 24/679 (3%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILK-NLS 107
           + +H R +    L  + +++++L+  Y+  G +  +++VF+ +     L+  T +   L+
Sbjct: 63  RALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLT 122

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC-SCLLDFISGEKIHAQVVKLGFDSFD 166
           + G  ++ L++  +M    + P   T      +C    L   SG  +    +K GF   D
Sbjct: 123 RNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTD 182

Query: 167 -DVGDALVEFYIKCDGGFENEKGMIQRK-FKDLKSR----WNSLISLAVQNGKSEKSFEL 220
             VG AL++ + +      N   +  RK F  L  R    W  +I+  VQ G + K+ EL
Sbjct: 183 VSVGCALIDMFAR------NGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVEL 236

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  M  +G E D  T+ +++ +  E  S  LG+ +H + +      D  V+  L+ MY+K
Sbjct: 237 FLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTK 296

Query: 281 LA---SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE-SLELLMCMVRSGFRADLFT 336
           L    S+E A+ +F +M   + + W  +IS Y Q G  +  ++ELL  M+      +  T
Sbjct: 297 LQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLT 356

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
             + + + + + + + G+Q+HA V++        V N+L+ MY E   +  ARK FD + 
Sbjct: 357 YSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLY 416

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + ++S SS I      + S       S+++   V V   T  ++L A   +G     + 
Sbjct: 417 ERNLLSTSSDIGETGRSNASWS-----SQIESMDVGVSTFTFASLLSAAATVGLPTKGQQ 471

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           LH  S+K G  S   ++ ++   Y++CG ++ A   FDE + D  ++I+W S+ISA AKH
Sbjct: 472 LHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEME-DDHNVISWTSIISALAKH 530

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +   L+  M  S V+P+ +T++ +L+AC + GLV+EG+  F+ M++ +   P  EH
Sbjct: 531 GHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEH 590

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA MV+LL R+G + EA E + +MP K DA VW  LL AC+ +   E+ E+ A  +I +E
Sbjct: 591 YACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLE 650

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
           P++   YVLLSN+YA  G W+ VA++R+ +R R L K  G SW+ +G  +HEF A D SH
Sbjct: 651 PQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSH 710

Query: 697 PQADAIYTILGILELEIME 715
           P+A  IY  L +L  EI +
Sbjct: 711 PRAQEIYAKLAVLIREIKD 729


>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
 gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
          Length = 673

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 181/589 (30%), Positives = 324/589 (55%), Gaps = 15/589 (2%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRK 193
           Y  +IR C+      +G  IHA +++ G+     + ++LVE Y KCD    +   + +  
Sbjct: 13  YESLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDS-LRDATAVFELV 71

Query: 194 FKD-LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
            ++ +   WN LI+   Q G+S +S  L++ M  EG + ++ TL+++L +   L+ L+ G
Sbjct: 72  ARERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTG 131

Query: 253 RIVHCVAVVSDFCK--------DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           R +H   V+    +        D  + TAL++MY +  S+ DA+ +F+ +  +D   WN 
Sbjct: 132 REIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNA 191

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           M++AY ++G   +++ +L  M   G R    T +  +S   T+  ++  + +HA++L  G
Sbjct: 192 MVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATG 251

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
            + + +V  +L+ MY  C  L  A   F  ++ K +V+W++MI  Y     S +++R++ 
Sbjct: 252 LESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYH 311

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            M LEGV VD VT+I +L AC ++      + +H   +  G+     + TA+  +YA+ G
Sbjct: 312 VMDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAYARGG 371

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  +F E  ++ +++ TW++M++AYA+ G   +  ++Y +M+   +RP+ IT++ +
Sbjct: 372 HLVDADLVFAE--MEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYVSI 429

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L AC +AGL++ G   F  M   YG E  +EH + +V+LLGR+G +DEA  L+  +P++ 
Sbjct: 430 LFACNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPYRL 489

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
               W  LL AC+ H + E     A +   +E      YV LSN+YA  G W+ V+++R 
Sbjct: 490 GISAWMCLLGACRTHGDVERGARVARRAFQVESGEVAPYVALSNMYAGHGMWDEVSRVRQ 549

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            + +  L K+ G S++EI   +HEF   D++HP+ D+I     ILELE+
Sbjct: 550 LMANT-LDKSTGKSFVEIDGRLHEFIQGDETHPEKDSIQA--KILELEL 595



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/530 (24%), Positives = 247/530 (46%), Gaps = 21/530 (3%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           + +R  +T     SL+  C NP  L+    IHA +I+ HG      L ++L++ Y     
Sbjct: 2   DHSRLPITVPLYESLIRRCANPHSLEAGRSIHA-HILRHGYGGERFLLNSLVEMYCKCDS 60

Query: 81  LSLSQQVFNSITSPN-SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
           L  +  VF  +     +  +  ++   ++ G+  +++ +Y++M+ + + P   T   V+ 
Sbjct: 61  LRDATAVFELVARERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLG 120

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDS--------FDDV-GDALVEFYIKCDGGFENEKGMI 190
           +C+ L D  +G +IH   V LG  S         D V   ALV  Y +C G   + + + 
Sbjct: 121 ACANLEDLKTGREIHRSHV-LGGRSRPYERPMPVDAVMATALVTMYGRC-GSVADARAVF 178

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           +       + WN++++   +NG+  ++  + + M +EG     GT + +L     + +L+
Sbjct: 179 EGICGRDLAAWNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALD 238

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
             R +H   + +      +V T L+SMY +  SL  A   F ++ DKD V WN MI+AY 
Sbjct: 239 EARSIHAHILATGLESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYA 298

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           QSG  ++S+ +   M   G R D  T I  + + S++      + +HA ++  G +  V 
Sbjct: 299 QSGHSRDSIRIYHVMDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVV 358

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           +  +L++ Y     L  A  +F  ++ + V +WS+M+  Y        +L ++ EM+L+G
Sbjct: 359 LGTALVNAYARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQG 418

Query: 431 VEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           +  +++T ++IL AC + G L+H + Y        G+ S     + I     + G ++ A
Sbjct: 419 LRPNYITYVSILFACNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEA 478

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT---QMKQSDVRP 536
             L          I  W  ++ A   HGD  +  ++     Q++  +V P
Sbjct: 479 EALMASVPY-RLGISAWMCLLGACRTHGDVERGARVARRAFQVESGEVAP 527


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 328/622 (52%), Gaps = 41/622 (6%)

Query: 115 TLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           T +     AL+S  P   T+P +  + +C  +      +++H Q +K G ++   + + +
Sbjct: 2   TTIAATSSALKSFSPP--THPLISLLETCESMDQL---QQVHCQAIKKGLNANPVLQNRV 56

Query: 173 VEFYIKCD-GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231
           + F    + G F+  + +     +     WN++I    +    +    L+  M   G + 
Sbjct: 57  MTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP 116

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D  T   L +      +LE GR +H   +      ++ V+TAL+ MY     L+ A+ +F
Sbjct: 117 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 176

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D     D + WN++ISAY + G  +ES  L + M          T +  +S+ S +K++ 
Sbjct: 177 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 236

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN------------------------- 386
            GK++H+ V     +  + + N++IDMY +C +++                         
Sbjct: 237 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 296

Query: 387 ------CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
                  AR  FD +  K  VSW++MI GY+  ++  EAL LF  M+   V+ D  T+++
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 356

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC ++GALE  +++  Y  +  + +   V  A+   Y KCG ++ A  +F E  +  
Sbjct: 357 VLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE--MSQ 414

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +D  TW +MI   A +G   +   +++ M ++ + PD IT++G+L+AC + GLV++GR  
Sbjct: 415 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 474

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M   +G EP+  HY  +V+LL RAG + EA E++++MP K ++ VWG LL+ C+++ 
Sbjct: 475 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 534

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           E+++AE+  ++++ +EP+N   YVLL NIYAA  +WN + ++R  + D+G+KKTPGCS I
Sbjct: 535 ESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLI 594

Query: 681 EIGKLVHEFWAADQSHPQADAI 702
           E+   VHEF A D+SHPQ   I
Sbjct: 595 EMNGRVHEFVAGDRSHPQTKNI 616



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 240/515 (46%), Gaps = 38/515 (7%)

Query: 33  THSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFN 89
           TH   SLL  CE+   LQQ+H +  I  GL+ N +L + ++        G    ++++F+
Sbjct: 18  THPLISLLETCESMDQLQQVHCQ-AIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFD 76

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
            I  PN  ++ T+++  S+    +  + +Y +M  + + P   T+PF+ +  +  +    
Sbjct: 77  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 136

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G ++H  V+K G      V  ALV+ Y+ C G  +  +G+     K     WN +IS   
Sbjct: 137 GRQLHGHVLKHGLQYNVFVHTALVQMYLLC-GQLDTARGVFDVCPKADVITWNMIISAYN 195

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + GK E+S  LF +M  +     + TL+ +L +  +LK L  G+ VH          +L 
Sbjct: 196 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLV 255

Query: 270 VNTALLSMY-------------------------------SKLASLEDAKMLFDKMSDKD 298
           +  A++ MY                               + L  ++ A+  FDKM +KD
Sbjct: 256 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 315

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V W  MI  Y +S   KE+LEL   M  +  + D FT ++ +++ + +  +E G+ +  
Sbjct: 316 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 375

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            + RN     + V N+LIDMY +C D++ A  IF  +  +   +W++MI G   +    +
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 435

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIF 477
           AL +FS M    +  D +T I +L AC + G ++   KY    + + G+    +    + 
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
              A+ G ++ A E+ +   I +  I+ W ++++ 
Sbjct: 496 DLLARAGRLKEAYEVIENMPIKANSIV-WGALLAG 529


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 214/709 (30%), Positives = 370/709 (52%), Gaps = 32/709 (4%)

Query: 25  QTRPHMTATHSFSLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLL 81
           + RP+  A    +L+N C    N    ++IH++ I      +N +L + LI  Y+  G L
Sbjct: 2   EVRPNCHAL--IALVNACSCLGNLAAGRRIHSQ-ISDRDFEENSVLGNALISMYSKCGSL 58

Query: 82  SLSQQVFNSI---TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFV 137
             ++Q F+ +   +  + + +  ++    + G   + L +++ M      P    T+  V
Sbjct: 59  IDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSV 118

Query: 138 IRSC--SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           + SC  + LL       IH ++V  G +    V  ALV+ Y K  G  ++   +  RK  
Sbjct: 119 LDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKL-GSLDDAWEVFLRKSD 177

Query: 196 DLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR--STVELKSL 249
           +  S      +++IS   QNG  ++S  LF  M +EG +    TL+++L   S + + S 
Sbjct: 178 EEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSA 237

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
               +   + VVS   +D  + T LL+ Y++   L  A+  FD +   D V WN M +AY
Sbjct: 238 TAFVLEQAMEVVS-ATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAY 296

Query: 310 YQSGFPKESLELLMCMVRSGFR---ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
            Q   P+E+L L   M+  G R   A   TA+ A ++         GK++ + +   G +
Sbjct: 297 LQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLE 356

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFS 424
              +V N+ ++MY +C  L  AR +F+ +    +  ++W+SM+  Y  H    EA  LF 
Sbjct: 357 GDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQ 416

Query: 425 EMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            M+ E  V+ + VT + +L A  +  ++   + +H   +  G  S + +  A+   YAKC
Sbjct: 417 AMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKC 476

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G ++ A  +FD+   + +D+I W S+++ YA++G   +  KL+  M+Q  VRP+ ITF+ 
Sbjct: 477 GSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFIS 536

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
            LTAC + G +E+G  +   M   +G  P+ +H++ +V+LLGR G +DEA +L++    +
Sbjct: 537 ALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-Q 595

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
            D   W  LL ACK   E E  E  AE+++ ++PE A +Y++L+++YAAAG+WN  A +R
Sbjct: 596 ADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIR 655

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
             + D+G++  PGCS +E+ + +H F A D+SHP+++ IY     LELE
Sbjct: 656 KTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIY-----LELE 699


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 205/665 (30%), Positives = 344/665 (51%), Gaps = 18/665 (2%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY-EKTLLVY 119
           L ++L +++ L+D+Y   G +  + +VF+ I  P+ + +   +   +   E  ++ LL+ 
Sbjct: 166 LERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLV 225

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           ++M L+ + P   ++  ++ SC           IHA+V +LGF     V  ALV  Y +C
Sbjct: 226 RRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRC 285

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G  +    + +         WN++I+   Q G    +F ++  M+ EG   +  T +  
Sbjct: 286 -GSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTA 344

Query: 240 LRSTVELKSLELGR--IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           L++     S +LG    +H     +    D+ V TAL++MY    +++ A+  FD +  K
Sbjct: 345 LKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAK 404

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           + V WN M++AY  +G  +E++EL   M R     +  + +A    +   +++   + +H
Sbjct: 405 NIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAV---LGCCEDVSEARSIH 461

Query: 358 ANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQS 416
           A V+ NG   Q  S+ N ++ M+     L  A   FD+   K  VSW++ +      +  
Sbjct: 462 AEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDL 521

Query: 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG-YSMKLGLNSLSSVNTA 475
             A+  F  M+ EG   D  T+++++  C ++G LE  + +    S  + +     V +A
Sbjct: 522 HGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASA 581

Query: 476 IFISYAKCGC-IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ-SD 533
           +    AKCG  ++    LF     D KD++ WN+MI+AYA+HG   +  KL+  M+Q S 
Sbjct: 582 VMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSS 641

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDE 592
           VRPD  TF+ +L+ C +AGLVE+G   F   +E  G E    EHYA +V++LGR G++ E
Sbjct: 642 VRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLRE 701

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A + ++ MP   D+ VW  LL AC  + + E  E  A   I +   ++  YV+LSNIYAA
Sbjct: 702 AEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAA 761

Query: 653 AGKWNGVAKMRTFLRDRGLKK-TPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           AG+W    ++R  + +R +KK  PG S I +   VHEF+A D+SHPQ+DAIY      EL
Sbjct: 762 AGRWEDSIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYA-----EL 816

Query: 712 EIMEG 716
           E ++G
Sbjct: 817 ERLKG 821



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 221/482 (45%), Gaps = 33/482 (6%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           +T   ++R C    D   G ++H Q+VK G    D +G+ LV+ Y KC    +       
Sbjct: 25  ETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAA--- 81

Query: 192 RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG---TLINLLRSTV 244
             F  L+SR    WN+LI  A Q+  +   F+L+  M++E    +     T+I +L +  
Sbjct: 82  --FSALRSRGIATWNTLI--AAQSSPA-AVFDLYTRMKLEERAENRPNKLTIIAVLGAIA 136

Query: 245 ----------ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
                        S+   RIVH     SD  +DL V TALL  Y K   +E A  +F ++
Sbjct: 137 SGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRI 196

Query: 295 SDKDRVVWNIMISAYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
              D + WN  I A   +   P  +L L+  M   G   +  + +A +SS     ++   
Sbjct: 197 QVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLA 256

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +HA V   G    V V  +L+ MY  C  ++ +  +F+++  +  VSW++MI  +   
Sbjct: 257 RSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQC 316

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA--LEHVKYLHGYSMKLGLNSLSS 471
                A  ++  M+ EG   + +T +  L A  +  +  L     LHG+    GL     
Sbjct: 317 GHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVM 376

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V TA+   Y   G I+ A   FD   I +K+I++WN+M++AY  +G   +  +L+  MK+
Sbjct: 377 VGTALVTMYGSTGAIDRARAAFD--AIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKR 434

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
             + P+ +++L +L  C +   V E R I  E+  +  +         +V +  R+G ++
Sbjct: 435 QSLAPNKVSYLAVLGCCED---VSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLE 491

Query: 592 EA 593
           EA
Sbjct: 492 EA 493



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 184/396 (46%), Gaps = 21/396 (5%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           TL  LLR  +    L  GR +H   V     ++  +   L+ MYSK  SL+DA   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAAVSSIST----- 346
             +    WN +I+A  QS  P    +L   M    R+  R +  T IA + +I++     
Sbjct: 86  RSRGIATWNTLIAA--QSS-PAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSS 142

Query: 347 -----MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
                  +I   + +H ++  +  +  + V  +L+D Y +C  +  A ++F  ++   ++
Sbjct: 143 SSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLI 202

Query: 402 SWSSMIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            W++ I     +D+  + AL L   M LEG+  +  + + IL +C +  +L   + +H  
Sbjct: 203 CWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHAR 262

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
             +LG      V TA+   Y +CG ++ +  +F  E +  ++ ++WN+MI+A+A+ G  S
Sbjct: 263 VEELGFLGDVVVATALVTMYGRCGSVDESIAVF--EAMAVRNHVSWNAMIAAFAQCGHRS 320

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR-IIFKEMKESYGYEPSQEHYAS 579
             F +Y +M+Q   RP+ ITF+  L A  ++   + G            G E       +
Sbjct: 321 AAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTA 380

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +V + G  G +D AR     +P K +   W  +L+A
Sbjct: 381 LVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTA 415



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 125/290 (43%), Gaps = 17/290 (5%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
            ++L  CE+    + IHA  ++ +GL  Q   +++ ++  +A  G L  +   F++    
Sbjct: 445 LAVLGCCEDVSEARSIHAE-VVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVK 503

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +S+ + T +  LS   +    +  +  M  +   P + T   V+  C+ L     G  I 
Sbjct: 504 DSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQ 563

Query: 155 AQV---VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNSLISLAV 209
            Q+   +++  D    V  A++    KC    +  + +  R   D K    WN++I+   
Sbjct: 564 QQLSAAIEVERDVV--VASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYA 621

Query: 210 QNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC--- 265
           Q+G   K+ +LF++M+   +   DS T +++L        +E G  +HC  +  +     
Sbjct: 622 QHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDG--IHCFFLAREVLGIE 679

Query: 266 -KDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSG 313
            + +     L+ +  ++  L +A+    KM    D VVW  ++ A    G
Sbjct: 680 QQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYG 729


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/467 (37%), Positives = 264/467 (56%), Gaps = 38/467 (8%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL+ Y++L S  DA+ +F+ + + D V W  +IS Y  +  P ++  +   +  SG R D
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYC----------- 380
            F  + AVS+    K++  G+ +H  V R   GSD  V   N+LIDMY            
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVG--NALIDMYSRSGAIEVACSV 411

Query: 381 --------------------ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
                               +C D+  AR+IFD +  +  VSW++MI GYV  +  +  L
Sbjct: 412 FKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGL 471

Query: 421 RLFSEMKLEGVE-VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            LF EM+ EG +    +TI+ +L  C +IGA +    +HGY  K  L+   +VN A+   
Sbjct: 472 ELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDM 531

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAK G + +A ++F E  +  +D+ +W +MIS  A HG  +   + ++ M +S   P+ +
Sbjct: 532 YAKSGALVLALKIFQE--MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEV 589

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T L +L+AC +AGLV EGR +F++M + +G +P  +HY  MV+LLGRAG + EA+EL++ 
Sbjct: 590 TLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEH 649

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP KPD+ +W  LLSAC +H    LAE+  + +I +EP++ G Y+LL NIY +A +W   
Sbjct: 650 MPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDA 709

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
            K R  +RDR +KK PGCSW+E+  +VHEF A D  H     +YT+L
Sbjct: 710 LKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVL 756



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 180/421 (42%), Gaps = 40/421 (9%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMI 190
           T+ F+++ C  L      ++IH + V LG        +   L+  Y +     + +K   
Sbjct: 256 TFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 312

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
             +  D+ S W  LISL +   +  K+F +F  +   G   DS  ++  + +    K L 
Sbjct: 313 HIQNPDIVS-WTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLS 371

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYS------------------------------- 279
            GRIVH +    +   D  V  AL+ MYS                               
Sbjct: 372 NGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFI 431

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-ADLFTAI 338
           K   +E A+ +FD+M  ++ V W  MI+ Y Q   P   LEL   M   G     + T +
Sbjct: 432 KCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIV 491

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           A +S  + +   + G  +H  V +   D  V+V+N+L+DMY +   L  A KIF  +  +
Sbjct: 492 AVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKR 551

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
            V SW++MI G   H +   AL  FS+M   G   + VT++++L AC + G +   + L 
Sbjct: 552 DVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLF 611

Query: 459 GYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
              ++  G+         +     + G +  A EL +   I    +I W S++SA   HG
Sbjct: 612 QKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVI-WRSLLSACLVHG 670

Query: 518 D 518
           +
Sbjct: 671 N 671



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 187/430 (43%), Gaps = 37/430 (8%)

Query: 20  RFPANQTR-PHMTATHSFSLLNLCENPQHLQQIHARYIILHGL-HQNLILSSNLIDSYAN 77
           +F +   R  HM     + LL  C + + L+QIH + + L  L  +   L+  L+++Y  
Sbjct: 241 KFASYTNRNAHMNTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQ 300

Query: 78  LGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
           LG    +Q+VFN I +P+ + +  ++       +  K   ++  +    + P        
Sbjct: 301 LGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGA 360

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFE------------- 184
           + +C    D  +G  +H  V +    S   VG+AL++ Y +  G  E             
Sbjct: 361 VSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSR-SGAIEVACSVFKTMEIKD 419

Query: 185 --------------NEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRM 226
                         N+    +R F ++  R    W ++I+  VQ        ELF+ MR 
Sbjct: 420 VSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRA 479

Query: 227 EGAEFDSG-TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           EG ++ +  T++ +L    ++ + +LG  VH     ++   D++VN AL+ MY+K  +L 
Sbjct: 480 EGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALV 539

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A  +F +M  +D   W  MIS     G    +LE    M +SG   +  T ++ +S+ S
Sbjct: 540 LALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACS 599

Query: 346 TMKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSW 403
               +  G+ +   +++ +G   ++  +  ++D+      L  A+++ + +  K   V W
Sbjct: 600 HAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIW 659

Query: 404 SSMIKGYVTH 413
            S++   + H
Sbjct: 660 RSLLSACLVH 669



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 449 GALEHVKYLHGYSMKLGL--NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           G+LE +K +HG ++ LGL  +    +   +  +Y + G    A ++F+   I + DI++W
Sbjct: 265 GSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNH--IQNPDIVSW 322

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM-K 565
             +IS Y       + F +++ +  S +RPD    +G ++AC +   +  GRI+   + +
Sbjct: 323 TCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFR 382

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
              G +P   +  +++++  R+G ++ A  + K M  K D   W  LL+ 
Sbjct: 383 FELGSDPIVGN--ALIDMYSRSGAIEVACSVFKTMEIK-DVSSWTSLLNG 429


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/543 (34%), Positives = 296/543 (54%), Gaps = 6/543 (1%)

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           V   L+ + +  D  F   + +  +  K     WN +     ++    ++  L+ LM   
Sbjct: 62  VSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRN 121

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G   D+ +   +L++   L  L  GR +H   +      D+ V  AL+S +S   ++E A
Sbjct: 122 GTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAA 181

Query: 288 KMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSI 344
           + +FD +    +D V WN MIS Y QS   + +L++   ++  G    D  T ++A+S  
Sbjct: 182 RAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVC 241

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
             +  ++ GK++H     +G    V V +SLIDMY +C  +  ARK+FD +  +  V W+
Sbjct: 242 GRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWT 301

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           SMI GY   D   EA+ LF EM++ G   D  TI  +L AC + GAL   +++H Y  + 
Sbjct: 302 SMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERN 361

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
            +    +   A+   Y+KCG I+ A E+F    +   DI +W+++IS  A +G+  +   
Sbjct: 362 SIEMDLNARNALIGMYSKCGDIQKALEIF--HGLTQPDIFSWSAVISGLAMNGESDKALH 419

Query: 525 LYTQMKQ-SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
           L++QM+  SD+RP+ ITFLG+L AC + G V++G   F  M + Y   P  EHY  MV+L
Sbjct: 420 LFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDL 479

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRA  + EA + ++ +P +PD  +W  LL AC+ H   ELAE  A+++  +EP   G  
Sbjct: 480 LGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGAR 539

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLLSN+YA+A +W  V ++R  +  + +KK PGCS++EI  LVHE + AD+SHP+  AIY
Sbjct: 540 VLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIY 599

Query: 704 TIL 706
             +
Sbjct: 600 ETM 602



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/518 (27%), Positives = 259/518 (50%), Gaps = 33/518 (6%)

Query: 20  RFPANQTRPHMTATHSFSL--LNLCENPQHLQQIHARYIILHGLHQNLILSSNLID-SYA 76
           R P      +  + H+FSL  L    +P+   QI + + I  G+ ++ ++SS L+  S +
Sbjct: 14  RRPWGWAWGYRQSYHNFSLSLLQNLSHPRSFNQILS-HAIASGVFRDPVVSSKLLYYSLS 72

Query: 77  NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
           +    + S+ +F  I  PN   +  + +  S+     +T+ +Y  M      P   ++PF
Sbjct: 73  HDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPF 132

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKG---MIQ 191
           V+++C+ L     G +IH+  +KLG   D F  V +AL+  +  C G  E  +    M+ 
Sbjct: 133 VLKACARLSLLHKGREIHSSTLKLGVHLDVF--VQNALISAFSSC-GAVEAARAVFDMLP 189

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLE 250
              +D+ S WNS+IS  +Q+ + E + ++F  +  +G+   D  TL++ L     L  L+
Sbjct: 190 ALVRDVVS-WNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLD 248

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
           LG+ +H +   S F  D+ V ++L+ MYSK   +EDA+ +FD++  ++ V W  MI+ Y 
Sbjct: 249 LGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYA 308

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           QS   KE++EL   M   GF AD  T    +S+      +  G+ +H    RN  +  ++
Sbjct: 309 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 368

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL-E 429
             N+LI MY +C D+  A +IF  +    + SWS++I G   + +S +AL LFS+M++  
Sbjct: 369 ARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMIS 428

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV-NTAIFISYAKCGCIEM 488
            +  + +T + +L AC + G ++   Y          N+++ + N    I +  C  +++
Sbjct: 429 DIRPNEITFLGVLCACNHGGFVDKGLYY--------FNAMTQIYNLTPGIEHYGC-MVDL 479

Query: 489 AGE---LFDEEKI-----DSKDIITWNSMISAYAKHGD 518
            G    L + EK         D++ W S++ A   HG+
Sbjct: 480 LGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGN 517


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/636 (30%), Positives = 338/636 (53%), Gaps = 15/636 (2%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           L  ++Q+F+ +   N + + +++   ++ G YE+ + ++ +    ++   + TY   +  
Sbjct: 99  LGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGF 158

Query: 141 CS--CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           C   C LDF  G+ +H  VV  G      + + L++ Y KC G  +    +  R  +  +
Sbjct: 159 CGERCDLDF--GKLLHGLVVVNGLSQQVFLINVLIDMYSKC-GKLDQAMSLFDRCNERDQ 215

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST-VELKS--LELGRIV 255
             WNSLIS  V+ G +E+   L   M   G +  +  L ++L++  + L    +E G  +
Sbjct: 216 VSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAI 275

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ---- 311
           HC A       D+ V TALL MY+K  SL++A  LF  M  K+ V +N MIS + Q    
Sbjct: 276 HCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDI 335

Query: 312 -SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
                 E+ +L M M R G      T    + + S  K +E+G+Q+HA + +N       
Sbjct: 336 TDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEF 395

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           + ++LI++Y          + F S   + + SW+S+I  +V ++Q   A  LF ++    
Sbjct: 396 IGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSP 455

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           +  +  T+  ++ AC +  AL   + + GY++K G+++ +SV T+    YAK G + +A 
Sbjct: 456 IRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLAN 515

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++F E  + + D+ T+++MIS+ A+HG       ++  MK   ++P+   FLG+L AC +
Sbjct: 516 KVFIE--VQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCH 573

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
            GLV  G   F+ MK SYG  P+++H+  + +LLGR G + +A  L+    F+    +W 
Sbjct: 574 GGLVTHGVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMWR 633

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LLS+C+++ ++ + +  AE+L+ +EPE +G+YVLL NIY  +G  +   ++R  +RDRG
Sbjct: 634 ALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRG 693

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           +KK P  SWI +G   H F  AD SHP +  IYT+L
Sbjct: 694 VKKEPALSWIVLGNQTHSFAVADWSHPSSQMIYTML 729


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 279/524 (53%), Gaps = 71/524 (13%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLE---DAKMLFDKMSDKDR------------ 299
           +HC  + S     LSV+ AL+++Y K  + E   DA+ + D+M DKD             
Sbjct: 185 LHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVR 244

Query: 300 -------------------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
                              VVWN MIS Y QSG   ++ EL   MV      D FT  + 
Sbjct: 245 RGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSV 304

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVK 396
           +S+ +       GK +H  ++R   ++     + V+N+L+ +Y +   +  A++IFD++ 
Sbjct: 305 LSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 364

Query: 397 TKTVVSWSS-------------------------------MIKGYVTHDQSLEALRLFSE 425
            K VVSW++                               M+ GYV    S +AL+LF++
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 424

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+ E V+    T    + AC  +GAL+H + LH + ++ G  + +S   A+   YAKCG 
Sbjct: 425 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 484

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  +F    + + D ++WN+MISA  +HG   +  +L+ QM    + PD I+FL +L
Sbjct: 485 VNDARLVF--LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 542

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           TAC +AGLV+EG   F+ MK  +G  P ++HYA +++LLGR+G + EAR+L+K MPF+P 
Sbjct: 543 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 602

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
             +W  +LS C+ + + E     A++L  M P++ G Y+LLSN Y+AAG+W   A++R  
Sbjct: 603 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 662

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +RDRG+KK PGCSWIE+G  +H F   D  HP+A  +Y  L ++
Sbjct: 663 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVI 706



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 230/525 (43%), Gaps = 75/525 (14%)

Query: 68  SSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQM-AL 124
           +++L+ + A  G L  +   F+++     +++L+  ++   ++       + V+  +   
Sbjct: 95  ATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 154

Query: 125 QSMYPAEDTYPFVIRSCSCLLDFISGE--KIHAQVVKLGFDSFDDVGDALVEFYIKCD-- 180
            S+ P + ++  +I +   + +  +    ++H  V+K G  +   V +AL+  Y+KCD  
Sbjct: 155 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 214

Query: 181 -GGFENEK------------------GMIQRK--------FKDLKSR----WNSLISLAV 209
              ++  K                  G ++R         F+++  +    WN++IS  V
Sbjct: 215 EASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYV 274

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSDFCKD 267
           Q+G    +FELF+ M  E    D  T  ++L +         G+ VH   + +  +F  +
Sbjct: 275 QSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPE 334

Query: 268 --LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
             L VN AL+++YSK   +  AK +FD M+ KD V WN ++S Y  SG   +++E+   M
Sbjct: 335 AALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVM 394

Query: 326 ---------------VRSGFRADL----------------FTAIAAVSSISTMKNIEWGK 354
                          V  G   D                 +T   A+++   +  ++ G+
Sbjct: 395 PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGR 454

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+HA++++ G +   S  N+L+ MY +C  +N AR +F  +     VSW++MI     H 
Sbjct: 455 QLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHG 514

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVN 473
              EAL LF +M  EG++ D ++ + IL AC + G + E   Y        G++      
Sbjct: 515 HGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHY 574

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             +     + G I  A +L      +    I W +++S    +GD
Sbjct: 575 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSI-WEAILSGCRTNGD 618



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 3/181 (1%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  + ++  Y + G L  + +VF  +   N L +  ++      G  E  L ++ QM
Sbjct: 366 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 425

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             + + P + TY   I +C  L     G ++HA +V+ GF++ +  G+AL+  Y KC  G
Sbjct: 426 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC--G 483

Query: 183 FENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             N+  ++     +L S  WN++IS   Q+G   ++ ELF  M  EG + D  + + +L 
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543

Query: 242 S 242
           +
Sbjct: 544 A 544



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 47/289 (16%)

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEM- 426
           S   SL+        L  A   FD+V    +  V  ++M+  +     +  A+ +F  + 
Sbjct: 93  SPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALL 152

Query: 427 ---KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
               L   +  F  +I+ +    N+ A  H   LH   +K G  ++ SV+ A+   Y KC
Sbjct: 153 GSGSLRPDDYSFTALISAVGQMHNLAA-PHCTQLHCSVLKSGAAAVLSVSNALIALYMKC 211

Query: 484 GCIEM---AGELFDEEKIDSKDIITWNSMISAYAKHGD------------------W--- 519
              E    A ++ DE  +  KD +TW +M+  Y + GD                  W   
Sbjct: 212 DTPEASWDARKVLDE--MPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAM 269

Query: 520 ----------SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE---MKE 566
                     +  F+L+ +M    V  D  TF  +L+AC NAG    G+ +  +   ++ 
Sbjct: 270 ISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQP 329

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++  E +     ++V L  + G +  A+ +   M  K D   W  +LS 
Sbjct: 330 NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSG 377


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 203/631 (32%), Positives = 316/631 (50%), Gaps = 63/631 (9%)

Query: 135 PFVIRSCSCLLDFISGE-----KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
           P  ++SCS     +S        +HA  VK G     +  + L+  Y K      N    
Sbjct: 288 PLWLQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAK-----SNNMAH 342

Query: 190 IQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
            Q+ F ++  R    W  LIS   + G SE  F LF+ M+ +GA  +  TL ++L+    
Sbjct: 343 AQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSL 402

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
             +L+LG+ VH   + +    D+ +  ++L +Y K    E A+ LF+ M++ D V WNIM
Sbjct: 403 DNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIM 462

Query: 306 ISAY-------------------------------YQSGFPKESLELLMCMVRSGFRADL 334
           I AY                                Q G+ + +LE L CMV  G     
Sbjct: 463 IGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSA 522

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T   A+   S++ ++E G+Q+H  VL+ G D    + +SL++MYC+C  ++ A  I   
Sbjct: 523 VTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRD 582

Query: 395 VKTKT----------------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           V                    +VSW SM+ GYV + +  + L+ F  M  E V VD  T+
Sbjct: 583 VPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTV 642

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
             I+ AC N G LE  +++H Y  K+G    + V +++   Y+K G ++ A  +F +   
Sbjct: 643 TTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQS-- 700

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           +  +I+ W SMIS YA HG       L+ +M    + P+ +TFLG+L AC +AGL+EEG 
Sbjct: 701 NEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGC 760

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
             F+ MK++Y   P  EH  SMV+L GRAGH+ + +  +          VW   LS+C++
Sbjct: 761 RYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRL 820

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H   E+ +  +E L+ + P + G YVLLSN+ A+  +W+  A++R+ +  RG+KK PG S
Sbjct: 821 HKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQS 880

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           WI++   +H F   D+SHPQ D IY+ L IL
Sbjct: 881 WIQLKDQIHTFVMGDRSHPQDDEIYSYLDIL 911



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 211/461 (45%), Gaps = 49/461 (10%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
             L  +P  L  +HA Y+  +G  Q L  +++L+  YA    ++ +Q++F+ I   N+  
Sbjct: 299 FTLSNSPPPLGTLHALYV-KNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQT 357

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           +  ++   ++ G  E    ++++M  +   P + T   V++ CS   +   G+ +HA ++
Sbjct: 358 WTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWML 417

Query: 159 KLGFDSFDDVGDALVEFYIKCD------------------------------GGFENEKG 188
           + G D    +G+++++ Y+KC                               G  E    
Sbjct: 418 RNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLD 477

Query: 189 MIQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
           M +R  +KD+ S WN+++   +Q G    + E    M   G EF + T    L     L 
Sbjct: 478 MFRRLPYKDVVS-WNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLS 536

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD------------KMS 295
            +ELGR +H + +   F  D  + ++L+ MY K   ++ A ++              ++S
Sbjct: 537 HVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVS 596

Query: 296 DKDR----VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
            K+     V W  M+S Y  +G  ++ L+    MVR     D+ T    +S+ +    +E
Sbjct: 597 YKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILE 656

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +G+ +HA V + G      V +SLIDMY +   L+ A  +F       +V W+SMI GY 
Sbjct: 657 FGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYA 716

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
            H Q + A+ LF EM  +G+  + VT + +L AC + G +E
Sbjct: 717 LHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIE 757



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 199/451 (44%), Gaps = 57/451 (12%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C    +LQ    +HA +++ +G+  +++L ++++D Y    +   ++++F  +  
Sbjct: 395 SVLKCCSLDNNLQLGKGVHA-WMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNE 453

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQM-----------------------ALQSMYPA 130
            + + +  ++    + G+ EK+L +++++                       AL+ +Y  
Sbjct: 454 GDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCM 513

Query: 131 ED--------TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
            +        T+   +   S L     G ++H  V+K GFDS   +  +LVE Y KC G 
Sbjct: 514 VECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKC-GR 572

Query: 183 FEN-------------EKGMIQRKFKDLKS---RWNSLISLAVQNGKSEKSFELFKLMRM 226
            +               KG  +  +K+ K+    W S++S  V NGK E   + F+LM  
Sbjct: 573 MDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVR 632

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           E    D  T+  ++ +      LE GR VH          D  V ++L+ MYSK  SL+D
Sbjct: 633 ELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDD 692

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A M+F + ++ + V+W  MIS Y   G    ++ L   M+  G   +  T +  +++ S 
Sbjct: 693 AWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSH 752

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHN--SLIDMYCECEDLNCARK-IFDSVKTKTVVSW 403
              IE G + +  ++++       V +  S++D+Y     L   +  IF +  +     W
Sbjct: 753 AGLIEEGCR-YFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVW 811

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
            S +     H +++E  +  SEM L+    D
Sbjct: 812 KSFLSSCRLH-KNVEMGKWVSEMLLQVAPSD 841


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 278/515 (53%), Gaps = 4/515 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W SLIS   QNG    +   F  MR EG   +  T     ++   L+    G+ +H +AV
Sbjct: 26  WTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 85

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D+ V  +   MY K    +DA+ LFD++ +++   WN  IS     G P+E++E
Sbjct: 86  KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIE 145

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
             +   R     +  T  A +++ S   ++  G Q+H  VLR+G D  VSV N LID Y 
Sbjct: 146 AFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 205

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C+ +  +  IF  + TK  VSW S++  YV + +  +A  L+   + + VE     I +
Sbjct: 206 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISS 265

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC  +  LE  + +H +++K  +     V +A+   Y KCGCIE + + FDE  +  
Sbjct: 266 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDE--MPE 323

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQM--KQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           K+++T NS+I  YA  G       L+ +M  +     P+ +TF+ LL+AC  AG VE G 
Sbjct: 324 KNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM 383

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618
            IF  M+ +YG EP  EHY+ +V++LGRAG ++ A E +K MP +P   VWG L +AC+M
Sbjct: 384 KIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRM 443

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H + +L  L AE L  ++P+++GN+VLLSN +AAAG+W     +R  L+  G+KK  G S
Sbjct: 444 HGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 503

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           WI +   VH F A D+SH     I T L  L  E+
Sbjct: 504 WITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEM 538



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 215/448 (47%), Gaps = 9/448 (2%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y+ L     ++ V     + N + + +++  L++ G +   L+ + +M  + + P + T+
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           P   ++ + L   ++G++IHA  VK G   D F  VG +  + Y K     +  K   + 
Sbjct: 62  PCAFKAVASLRLPVTGKQIHALAVKCGRILDVF--VGCSAFDMYCKTRLRDDARKLFDEI 119

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             ++L++ WN+ IS +V +G+  ++ E F   R      +S T    L +  +   L LG
Sbjct: 120 PERNLET-WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLG 178

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H + + S F  D+SV   L+  Y K   +  ++++F +M  K+ V W  +++AY Q+
Sbjct: 179 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 238

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
              +++  L +   +       F   + +S+ + M  +E G+ +HA+ ++   +  + V 
Sbjct: 239 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVG 298

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV- 431
           ++L+DMY +C  +  + + FD +  K +V+ +S+I GY    Q   AL LF EM   G  
Sbjct: 299 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCG 358

Query: 432 -EVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
              +++T +++L AC   GA+E+ +K         G+   +   + I     + G +E A
Sbjct: 359 PTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERA 418

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHG 517
            E   +  I    I  W ++ +A   HG
Sbjct: 419 YEFIKKMPIQPT-ISVWGALQNACRMHG 445



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 158/327 (48%), Gaps = 3/327 (0%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MYSKL   E A+++      ++ V W  +IS   Q+G    +L     M R G   + FT
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
              A  ++++++    GKQ+HA  ++ G    V V  S  DMYC+    + ARK+FD + 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + + +W++ I   VT  +  EA+  F E +      + +T    L AC +   L     
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           LHG  ++ G ++  SV   +   Y KC  I  +  +F E  + +K+ ++W S+++AY ++
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTE--MGTKNAVSWCSLVAAYVQN 238

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
            +  +   LY + ++  V         +L+AC     +E GR I     ++   E +   
Sbjct: 239 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC-VERTIFV 297

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFK 603
            +++V++ G+ G ++++ +   +MP K
Sbjct: 298 GSALVDMYGKCGCIEDSEQAFDEMPEK 324



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 10/353 (2%)

Query: 12  QSGH-----VKFLRFPANQTRPH-MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNL 65
           Q+GH     V+F         P+  T   +F  +     P   +QIHA   +  G   ++
Sbjct: 35  QNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHA-LAVKCGRILDV 93

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ 125
            +  +  D Y    L   ++++F+ I   N   +   + N    G   + +  + +    
Sbjct: 94  FVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRI 153

Query: 126 SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN 185
             +P   T+   + +CS  L    G ++H  V++ GFD+   V + L++FY KC     +
Sbjct: 154 DGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSS 213

Query: 186 EKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
           E    +   K+  S W SL++  VQN + EK+  L+   R +  E     + ++L +   
Sbjct: 214 EIIFTEMGTKNAVS-WCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAG 272

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           +  LELGR +H  AV +   + + V +AL+ MY K   +ED++  FD+M +K+ V  N +
Sbjct: 273 MAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSL 332

Query: 306 ISAYYQSGFPKESLELL--MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356
           I  Y   G    +L L   M     G   +  T ++ +S+ S    +E G ++
Sbjct: 333 IGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 385



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 17/294 (5%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           + LN C +  HL    Q+H   ++  G   ++ + + LID Y     +  S+ +F  + +
Sbjct: 164 AFLNACSDWLHLNLGMQLHG-LVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGT 222

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS----CSCLLDFIS 149
            N++ + +++    +  E EK  ++Y    L+S     +T  F+I S    C+ +     
Sbjct: 223 KNAVSWCSLVAAYVQNHEDEKASVLY----LRSRKDIVETSDFMISSVLSACAGMAGLEL 278

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G  IHA  VK   +    VG ALV+ Y KC    ++E+   +   K+L +R NSLI    
Sbjct: 279 GRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTR-NSLIGGYA 337

Query: 210 QNGKSEKSFELFKLM--RMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCK 266
             G+ + +  LF+ M  R  G   +  T ++LL +     ++E G +I   +        
Sbjct: 338 HQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEP 397

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISAYYQSGFPKESL 319
                + ++ M  +   +E A     KM  +  + VW  + +A    G P+  L
Sbjct: 398 GAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGL 451


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/585 (33%), Positives = 321/585 (54%), Gaps = 13/585 (2%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           +K+    G Y +TL ++ ++ L          P VI++ S       G ++H   +K G 
Sbjct: 23  IKSFLSKGLYHQTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALKTGS 82

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSF 218
            S   V ++++  Y K      ++ G  ++ F  +  R    WNSLI+  + NG  E++ 
Sbjct: 83  HSETVVSNSIITMYFK-----FSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEAL 137

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD-FCKDLSVNTALLSM 277
           E    + + G       L +++         ++GR +H + VV++   + + ++TAL+  
Sbjct: 138 EALNDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDF 197

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y +      A  +FD M  K+ V W  MIS         E+      M   G   +  T+
Sbjct: 198 YFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTS 257

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC-EDLNCARKIFDSVK 396
           IA +S+ +    ++ GK++H    R+G +   S  ++L++MYC+C E ++ A  IF+   
Sbjct: 258 IALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSS 317

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            + VV WSS+I  +     S +AL+LF++M+ E +E ++VT++ ++ AC N+ +L+H   
Sbjct: 318 FRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCG 377

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           LHGY  K G     SV  A+   YAKCGC+  + ++F E  + ++D +TW+S+ISAY  H
Sbjct: 378 LHGYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLE--MPNRDNVTWSSLISAYGLH 435

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   Q  +++ +M +  V+PD ITFL +L+AC +AGLV EG+ IFK+++       + EH
Sbjct: 436 GCGEQALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEH 495

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA +V+LLGR+G ++ A E+ + MP KP AR+W  L+SACK+H   ++AE+ A +LI  E
Sbjct: 496 YACLVDLLGRSGKLEYALEIRRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSE 555

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           P NAGNY LL+ IYA  G W    ++R  ++ + LKK  G S IE
Sbjct: 556 PNNAGNYTLLNTIYAEHGHWLDTEQVREAMKLQKLKKCYGFSRIE 600



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 231/472 (48%), Gaps = 31/472 (6%)

Query: 1   MLGLLPPACSLQSGHVK-FLRFPANQTRPHMTATHSFSLLNLCEN-------PQHLQ--- 49
           +L  + P CS  S  +K FL    ++   H T    FS L+LC +       P  ++   
Sbjct: 8   LLTTVAPTCSSPSNQIKSFL----SKGLYHQT-LQLFSELHLCGHSSISFFLPSVIKASS 62

Query: 50  --QIHARYIILH------GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
             Q H     LH      G H   ++S+++I  Y     +  ++QVF+++   + + + +
Sbjct: 63  SAQCHTFGTQLHCLALKTGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNS 122

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV--- 158
           ++      G  E+ L     + L  + P  +    V+  C   +    G +IHA VV   
Sbjct: 123 LINGYLHNGYLEEALEALNDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNE 182

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
           ++G   F  +  ALV+FY +C       +     + K++ S W ++IS  + +   +++F
Sbjct: 183 RIGQSMF--LSTALVDFYFRCGDSLMALRVFDGMEVKNVVS-WTTMISGCIAHQDYDEAF 239

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
             F+ M+ EG   +  T I LL +  E   ++ G+ +H  A    F    S ++AL++MY
Sbjct: 240 ACFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMY 299

Query: 279 SKLA-SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
            +    +  A+++F+  S +D V+W+ +I ++ + G   ++L+L   M       +  T 
Sbjct: 300 CQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTL 359

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           +A +S+ + + +++ G  +H  + + G  + +SV N+LI+MY +C  LN +RK+F  +  
Sbjct: 360 LAVISACTNLSSLKHGCGLHGYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPN 419

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           +  V+WSS+I  Y  H    +AL++F EM   GV+ D +T + +L AC + G
Sbjct: 420 RDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHAG 471



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 181/371 (48%), Gaps = 6/371 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIHA  ++   + Q++ LS+ L+D Y   G   ++ +VF+ +   N + + T++     
Sbjct: 172 RQIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIA 231

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             +Y++    ++ M  + + P   T   ++ +C+       G++IH    + GF+S    
Sbjct: 232 HQDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSF 291

Query: 169 GDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             ALV  Y +C       + + +   F+D+   W+S+I    + G S K+ +LF  MR E
Sbjct: 292 SSALVNMYCQCGEPMHLAELIFEGSSFRDV-VLWSSIIGSFSRRGDSFKALKLFNKMRTE 350

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
             E +  TL+ ++ +   L SL+ G  +H       FC  +SV  AL++MY+K   L  +
Sbjct: 351 EIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGFCFSISVGNALINMYAKCGCLNGS 410

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           + +F +M ++D V W+ +ISAY   G  +++L++   M   G + D  T +A +S+ +  
Sbjct: 411 RKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHA 470

Query: 348 KNIEWGKQMHANVLRNGSDYQVSV--HNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WS 404
             +  G+++   V R   +  +++  +  L+D+      L  A +I  ++  K     WS
Sbjct: 471 GLVAEGQRIFKQV-RADCEIPLTIEHYACLVDLLGRSGKLEYALEIRRTMPMKPSARIWS 529

Query: 405 SMIKGYVTHDQ 415
           S++     H +
Sbjct: 530 SLVSACKLHGR 540



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 128/280 (45%), Gaps = 8/280 (2%)

Query: 35  SFSLLNLCENP---QHLQQIHARYIILHGLHQNLILSSNLIDSYANLG-LLSLSQQVFNS 90
           S +LL+ C  P   +H ++IH  Y   HG       SS L++ Y   G  + L++ +F  
Sbjct: 257 SIALLSACAEPGFVKHGKEIHG-YAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEG 315

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
            +  + +L+ +I+ + S+ G+  K L ++ +M  + + P   T   VI +C+ L     G
Sbjct: 316 SSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHG 375

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
             +H  + K GF     VG+AL+  Y KC     + K  ++   +D    W+SLIS    
Sbjct: 376 CGLHGYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRD-NVTWSSLISAYGL 434

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLS 269
           +G  E++ ++F  M   G + D+ T + +L +      +  G RI   V    +    + 
Sbjct: 435 HGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIE 494

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMISA 308
               L+ +  +   LE A  +   M  K    +W+ ++SA
Sbjct: 495 HYACLVDLLGRSGKLEYALEIRRTMPMKPSARIWSSLVSA 534


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 207/694 (29%), Positives = 369/694 (53%), Gaps = 49/694 (7%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA ++   G      + ++L++ Y   G +  +++VF+ IT+ + + + +++    +
Sbjct: 105 KQLHA-HVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACR 163

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLD-FISGEKIHAQVVKLGFDSFDD 167
           F E+E  + +++ M L+++ P   T   V  +CS L++  + G+++HA V++ G D    
Sbjct: 164 FEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTF 222

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
             +ALV  Y K    +E +        KDL S WN++IS   QN + E++     +M   
Sbjct: 223 TNNALVTMYAKLGRVYEAKTLFDVFDDKDLVS-WNTIISSLSQNDRFEEALLYLHVMLQS 281

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS-DFCKDLSVNTALLSMYSKLASLED 286
           G   +  TL ++L +   L+ L  G+ +H   +++ D  ++  V  AL+ MY      E 
Sbjct: 282 GVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEK 341

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTAIAAVSSIS 345
            +++FD M  +   VWN MI+ Y ++ F  E++EL + MV   G   +  T  + + +  
Sbjct: 342 GRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACV 401

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
             ++    + +H+ V++ G +    V N+L+DMY     +  AR IF S+  K +VSW++
Sbjct: 402 RCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNT 461

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVE------------------VDFVTIINILPACVN 447
           MI GYV   +  +AL L  +M+    E                   + VT++ +LP C  
Sbjct: 462 MITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAA 521

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
           + AL   K +H Y++K  L+   +V +A+   YAKCGC+ ++  +F  E++  +++ITWN
Sbjct: 522 LAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVF--EQMSVRNVITWN 579

Query: 508 SMISAYAKHGDWSQCFKLYTQM-----KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
            +I AY  HG   +  KL+ +M        ++RP+ +T++ +  +  ++G+V+EG  +F 
Sbjct: 580 VLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFY 639

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF---KPDARVWGPLLSACKMH 619
            MK  +G EP+ +HYA +V+LLGR+G ++EA  L+K MP    K DA  W  LL ACK+H
Sbjct: 640 TMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDA--WSSLLGACKIH 697

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              E+ E+ A+ L  ++P          N+     K + + +    ++++G++K PGCSW
Sbjct: 698 QNLEIGEIAAKNLFVLDP----------NVLDYGTKQSMLGRK---MKEKGVRKEPGCSW 744

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           IE G  VH+F A D SHPQ+  ++  L  L L +
Sbjct: 745 IEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRM 778



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 270/545 (49%), Gaps = 47/545 (8%)

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
           + + +  Y  M    + P    +P V+++ + + D   G+++HA V K G      V ++
Sbjct: 66  FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 172 LVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRME 227
           LV  Y KC      +    +R F ++ +R    WNS+I+ A +  + E +  LF+LM +E
Sbjct: 126 LVNMYGKC-----GDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLE 180

Query: 228 GAEFDSGTLINLLRSTVEL-KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
                S TL+++  +   L   L LG+ VH   + +   +  + N AL++MY+KL  + +
Sbjct: 181 NVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFT-NNALVTMYAKLGRVYE 239

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           AK LFD   DKD V WN +IS+  Q+   +E+L  L  M++SG R +  T  + + + S 
Sbjct: 240 AKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSH 299

Query: 347 MKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
           ++ +  GK++HA VL N    + S V  +L+DMYC C+     R +FD +  +T+  W++
Sbjct: 300 LEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNA 359

Query: 406 MIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           MI GYV ++   EA+ LF EM  E G+  + VT+ ++LPACV   +    + +H   +K 
Sbjct: 360 MIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKW 419

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY---AKHGD--- 518
           G      V  A+   Y++ G IE+A  +F    ++ KDI++WN+MI+ Y    +H D   
Sbjct: 420 GFEKDKYVQNALMDMYSRMGRIEIARSIFG--SMNRKDIVSWNTMITGYVVCGRHDDALN 477

Query: 519 ------------WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
                           F  Y   K   ++P+ +T + +L  C     + +G       KE
Sbjct: 478 LLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKG-------KE 530

Query: 567 SYGYEPSQ------EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
            + Y   Q         +++V++  + G ++ +R + + M  + +   W  L+ A  MH 
Sbjct: 531 IHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMHG 589

Query: 621 ETELA 625
           + E A
Sbjct: 590 KGEEA 594



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 175/351 (49%), Gaps = 18/351 (5%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           MV +G   D F   A + + + ++++  GKQ+HA+V + G     +V NSL++MY +C D
Sbjct: 76  MVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGD 135

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           ++ AR++FD +  +  VSW+SMI      ++   A+ LF  M LE V     T++++  A
Sbjct: 136 IDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHA 195

Query: 445 CVN-IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           C N I  L   K +H + ++ G +  +  N A+   YAK G +  A  LFD    D KD+
Sbjct: 196 CSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFD--VFDDKDL 252

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++WN++IS+ +++  + +       M QS VRP+ +T   +L AC +  ++  G+ I   
Sbjct: 253 VSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAF 312

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSET 622
           +  +     +     ++V++       ++ R LV D  F+    VW  +++   +   + 
Sbjct: 313 VLMNNDLIENSFVGCALVDMYCNCKQPEKGR-LVFDGMFRRTIAVWNAMIAGYVRNEFDY 371

Query: 623 ELAELTAEKL--ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           E  EL  E +  + + P    N V LS++  A        +  +FL   G+
Sbjct: 372 EAIELFVEMVFELGLSP----NSVTLSSVLPAC------VRCESFLDKEGI 412



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query: 403 WSSMIKGYVTHDQSL-EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           W S ++       +  +A+  ++ M   GV  D      +L A   I  L   K LH + 
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
            K G    ++V  ++   Y KCG I+ A  +FDE  I ++D ++WNSMI+A  +  +W  
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDE--ITNRDDVSWNSMINAACRFEEWEL 169

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVN 550
              L+  M   +V P   T + +  AC N
Sbjct: 170 AVHLFRLMLLENVGPTSFTLVSVAHACSN 198


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 334/628 (53%), Gaps = 16/628 (2%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           L +LSK G+  +    +++M    +  +  +Y  +  +C  L     G  +H ++ ++G 
Sbjct: 53  LVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRM-RMGI 111

Query: 163 DSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFEL 220
           ++   +  + +++ Y +C G  E+   +   +  DL +    ++IS   + G  +K+  L
Sbjct: 112 ENPSVLLQNCVLQMYCEC-GSLEDADKLFD-EMSDLNAVSRTTMISAYAEQGLLDKAVGL 169

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
           F  M   G +  S     LL+S V  ++L++GR +H   + +  C + S+ T +++MY K
Sbjct: 170 FSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVK 229

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
              L  AK +FD+M+ K  V W  ++  Y Q+G  +++L+L + ++  G   D F     
Sbjct: 230 CGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVV 289

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           + + ++++ + +GKQ+HA V + G + +VSV   L+D Y +C     A + F  ++    
Sbjct: 290 LKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPND 349

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPACVNIGALEHVKYLHG 459
           VSWS++I GY    Q  EA++ F  ++ +  V ++  T  +I  AC  +        +H 
Sbjct: 350 VSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHA 409

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
            ++K  L       +A+   Y+KCGC++ A E+F  E +D+ DI+ W + IS +A +G+ 
Sbjct: 410 DAIKRSLIGSQYGESALITMYSKCGCLDDAHEVF--ESMDNPDIVAWTAFISGHAYYGNA 467

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           S+  +L+ +M    ++P+ +TF+ +LTAC +AGLVE+G+     M   Y   P+ +HY  
Sbjct: 468 SEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDC 527

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           M+++  R+G +DEA   +K+MPF+PDA  W   LS C  H   EL ++  E+L  ++PE+
Sbjct: 528 MIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPED 587

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
              YVL  N+Y  AGKW   A++   + +R LKK   CSWI+    +H F   D+ HPQ+
Sbjct: 588 TAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQS 647

Query: 700 DAIYTIL----GILELEI----MEGRRE 719
             IY  L    G +E ++    M  RRE
Sbjct: 648 QEIYEKLKEFDGFMEGDMFQCSMTERRE 675



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 14/386 (3%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL    NP+ L   +QIHA ++I  GL  N  + + +++ Y   G L  +++VF+ +  
Sbjct: 187 TLLKSLVNPRALDIGRQIHA-HVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAV 245

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
              + +  ++   ++ G     L ++  +  + +      +  V+++C+ L +   G++I
Sbjct: 246 KKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQI 305

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA V KLG +    VG  LV+FYIKC   FE+     Q   +     W+++IS   Q  +
Sbjct: 306 HACVAKLGLECEVSVGTPLVDFYIKC-SSFESACRAFQEIREPNDVSWSAIISGYCQMSQ 364

Query: 214 SEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
            E++ + FK +R + A   +S T  ++ ++   L    +G  VH  A+           +
Sbjct: 365 FEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGES 424

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL++MYSK   L+DA  +F+ M + D V W   IS +   G   E+L L   MV  G + 
Sbjct: 425 ALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKP 484

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV----HNSLIDMYCECEDLNCA 388
           +  T IA +++ S    +E GK     +LR    Y V+     ++ +ID+Y     L+ A
Sbjct: 485 NSVTFIAVLTACSHAGLVEQGKHYLDTMLRK---YNVAPTIDHYDCMIDIYARSGLLDEA 541

Query: 389 RKIFDSVKTKT-VVSWSSMIKGYVTH 413
            +   ++  +   +SW   + G  TH
Sbjct: 542 LRFMKNMPFEPDAMSWKCFLSGCWTH 567



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 125/269 (46%), Gaps = 4/269 (1%)

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           K+S K   V N+ + +  + G   E+ E    M ++G    L++      +   ++++  
Sbjct: 40  KISHKQGQVENLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSH 99

Query: 353 GKQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           G+ +H N +R G  +  V + N ++ MYCEC  L  A K+FD +     VS ++MI  Y 
Sbjct: 100 GRLLH-NRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYA 158

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 +A+ LFS M   G +        +L + VN  AL+  + +H + ++ GL S +S
Sbjct: 159 EQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNAS 218

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           + T I   Y KCG +  A  +FD+  +  K  + W  ++  Y + G      KL+  +  
Sbjct: 219 IETGIVNMYVKCGWLVGAKRVFDQMAV--KKPVAWTGLMVGYTQAGRARDALKLFVDLIT 276

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRII 560
             V  D   F  +L AC +   +  G+ I
Sbjct: 277 EGVEWDSFVFSVVLKACASLEELRFGKQI 305


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/643 (29%), Positives = 335/643 (52%), Gaps = 41/643 (6%)

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV--IRSCSCLLDFISGE 151
           P  + + T+L +       + T +     AL+S  P   T+P +  + +C  +      +
Sbjct: 2   PVPVRFRTLLHHRHVKKPKQMTTIAATSSALKSFSPP--THPLISLLETCESMDQL---Q 56

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCD-GGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           ++H Q +K G ++   + + ++ F    + G F+  + +     +     WN++I    +
Sbjct: 57  QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSR 116

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
               +    L+  M   G + D  T   L +      +LE GR +H   +      ++ V
Sbjct: 117 LDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFV 176

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           +TAL+ MY     L+ A+ +FD     D + WN++ISAY + G  +ES  L + M     
Sbjct: 177 HTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQV 236

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN---- 386
                T +  +S+ S +K++  GK++H+ V     +  + + N++IDMY +C +++    
Sbjct: 237 LPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALG 296

Query: 387 ---------------------------CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
                                       AR  FD +  K  VSW++MI GY+  ++  EA
Sbjct: 297 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 356

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           L LF  M+   V+ D  T++++L AC ++GALE  +++  Y  +  + +   V  A+   
Sbjct: 357 LELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDM 416

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y KCG ++ A  +F E  +  +D  TW +MI   A +G   +   +++ M ++ + PD I
Sbjct: 417 YFKCGDVDKAESIFRE--MSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEI 474

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           T++G+L+AC + GLV++GR  F  M   +G EP+  HY  +V+LL RAG + EA E++++
Sbjct: 475 TYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIEN 534

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           MP K ++ VWG LL+ C+++ E+++AE+  ++++ +EP+N   YVLL NIYAA  +WN +
Sbjct: 535 MPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDL 594

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            ++R  + D+G+KK PGCS IE+   VHEF A D+SHPQ   I
Sbjct: 595 RELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNI 637



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/515 (25%), Positives = 240/515 (46%), Gaps = 38/515 (7%)

Query: 33  THSF-SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFN 89
           TH   SLL  CE+   LQQ+H +  I  GL+ N +L + ++        G    ++++F+
Sbjct: 39  THPLISLLETCESMDQLQQVHCQ-AIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFD 97

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
            I  PN  ++ T+++  S+    +  + +Y +M  + + P   T+PF+ +  +  +    
Sbjct: 98  EIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEY 157

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G ++H  V+K G      V  ALV+ Y+ C G  +  +G+     K     WN +IS   
Sbjct: 158 GRQLHGHVLKHGLQYNVFVHTALVQMYLLC-GQLDTARGVFDVCPKADVITWNMIISAYN 216

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + GK E+S  LF +M  +     + TL+ +L +  +LK L  G+ VH          +L 
Sbjct: 217 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLV 276

Query: 270 VNTALLSMY-------------------------------SKLASLEDAKMLFDKMSDKD 298
           +  A++ MY                               + L  ++ A+  FDKM +KD
Sbjct: 277 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 336

Query: 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
            V W  MI  Y +S   KE+LEL   M  +  + D FT ++ +++ + +  +E G+ +  
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 396

Query: 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
            + RN     + V N+LIDMY +C D++ A  IF  +  +   +W++MI G   +    +
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 456

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIF 477
           AL +FS M    +  D +T I +L AC + G ++   KY    + + G+    +    + 
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
              A+ G ++ A E+ +   I +  I+ W ++++ 
Sbjct: 517 DLLARAGRLKEAYEVIENMPIKANSIV-WGALLAG 550


>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
          Length = 1118

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/645 (29%), Positives = 345/645 (53%), Gaps = 20/645 (3%)

Query: 44   NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTIL 103
             P     +HA  +    LH +  L+++++  Y       L++ +F+ I SP   L   +L
Sbjct: 486  TPLAAAHLHANILRSGLLHSSHHLTAHVLACYPP----GLARDLFDEIRSPTPRLANALL 541

Query: 104  KNLSKFGEYEKTLLVYKQMALQSMYPAED--TYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
            +   +  ++   +L+ +++ ++      D  T   ++R+C+ L     G  +HA  V+  
Sbjct: 542  RAHIRARQWRAAILLGQRLRVR-----RDGFTLSLLLRACTALPSLTHGRAVHAAAVRSC 596

Query: 162  FDSFDD-VGDALVEFYIKCD--GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
              S D  V  A+V+ Y +C    G  N  GM+++    L++   S+++   QNG +E++ 
Sbjct: 597  TASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRT---SVVTGYEQNGMAEEAL 653

Query: 219  ELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            E F + +  +G      TL++++ +  +L  +  G+  H   V +    DL++  A+L  
Sbjct: 654  EFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGF 713

Query: 278  YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
            Y K+  L+ +  LF+ M+D+D + W+ MI  Y Q G       +   MV++  + +  T 
Sbjct: 714  YVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTL 773

Query: 338  IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            ++ + + + + + E GK++H   +  G + ++ V  +L+DMY +C     A ++F  +  
Sbjct: 774  VSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPK 833

Query: 398  KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
            K VV+W+++I G   ++   E+L  F  M L     D VT++ +L AC   G       L
Sbjct: 834  KDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRLAICL 893

Query: 458  HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
            HGY ++ G N+ + V  A+   Y+KCG ++ A  +F  E    KDI+ W SMI+ Y  HG
Sbjct: 894  HGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVF--EGTTEKDIVVWGSMIAGYGAHG 951

Query: 518  DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
               +   LY +M  S ++P+ +TFL +L+AC ++GLV+EG  IF  M + +G  P+ EH 
Sbjct: 952  LGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQ 1011

Query: 578  ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
            ++MV+LLGRAG + EA  +++DM  +  A  W  LL+AC+ H+ T+++E+ A+ L+ ++P
Sbjct: 1012 SAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALLAACRKHNNTKMSEVAAKNLLKLDP 1071

Query: 638  ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            ++ G Y LL+N+YA   KW  V   R  ++ R L+K  G S +E+
Sbjct: 1072 DHVGYYNLLTNLYAFDEKWENVKDTRDMVKGRDLRKVAGYSSVEV 1116


>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
 gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
          Length = 625

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/622 (31%), Positives = 329/622 (52%), Gaps = 27/622 (4%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C   + L  I A  I     H N+++ ++L+ +Y   G L  +++VF+SI + + + + +
Sbjct: 20  CSGREELDTIQAS-IAASDFHSNVVVKNSLVSAYTRSGDLRSARKVFDSIENKDLISWNS 78

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           ++   S+ G  E+ L ++++M ++   P   TY  ++ +CS +     G+++HA+V +  
Sbjct: 79  MVVAYSQHGHGEEMLELFRKMDVE---PDSITYASILGACSAMELLELGKEVHARVSRSR 135

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKS 217
           F S   +  AL+  Y KC G  E+ +    R F  ++S     WN++IS  VQ+G++ ++
Sbjct: 136 FKSDPALAAALINMYSKC-GVLESAR----RVFDGIQSVDPSPWNAMISGLVQHGRAREA 190

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
             LF+ M+ E    D  + + +L +   L+ L  G  +H  A      KDL V TA+ +M
Sbjct: 191 LGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAVFNM 250

Query: 278 YSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           YSK   ++ A+ +FD M++K  VV WN MI+AY QSG  +E+LEL   M   G + D  T
Sbjct: 251 YSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDIT 310

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
              A+ + ++      G ++H+ +  +     V +  ++++MY +C +L  A   F+ ++
Sbjct: 311 YAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMR 370

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            K  V+WS+M+  ++      EAL L+  M  EG +   +T+   L AC  IGAL+  K 
Sbjct: 371 RKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKA 430

Query: 457 LHGYSMKLGLNSLSSVNTAIFIS------YAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +H       + +  ++   +F+       YAKCGC+ +A  +F    +  +D  +WN++I
Sbjct: 431 IHSR-----IQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFS--NLQRRDSFSWNTII 483

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
             +A HGD  +   L+ +M Q  V PD +TF  +L AC +AGL++ GR  F  M   Y  
Sbjct: 484 VGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRSHFLSMTGDYCI 543

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +P  +HY  +V++L RAG   EA  L   MPF P    W  LL ACK+H ET+     A 
Sbjct: 544 KPMLDHYECLVDVLSRAGWAREAEALAMAMPFTPRPVTWTTLLGACKLHGETKRGVEAAR 603

Query: 631 KLISMEPENAGNYVLLSNIYAA 652
            L+ +  E + +YVLLSN+ A 
Sbjct: 604 SLLELGFECSSSYVLLSNLVAG 625


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 205/633 (32%), Positives = 348/633 (54%), Gaps = 18/633 (2%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           ++VF+++   N + + T++    K G   +    +  M    + P+  ++  V  + S  
Sbjct: 168 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSIS 227

Query: 145 LDFISGEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWN 202
                    +  ++KLG +   D  V  + +  Y +  G  E+ + +     +     WN
Sbjct: 228 RSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAEL-GDIESSRRVFDSCVERNIEVWN 286

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV--ELKSLELGRIVHCVAV 260
           ++I + VQN    +S ELF L  +   E  S  +  LL ++    L+ +ELGR  H    
Sbjct: 287 TMIGVYVQNDCLVESIELF-LEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFH--GF 343

Query: 261 VSDFCKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
           VS   ++L +    +L+ MYS+  S+  +  +F  M ++D V WN MISA+ Q+G   E 
Sbjct: 344 VSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEG 403

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           L L+  M + GF+ D  T  A +S+ S ++N E GKQ HA ++R G  ++  +++ LIDM
Sbjct: 404 LMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDM 462

Query: 379 YCECEDLNCARKIFDS--VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           Y +   +  ++K+F+      +   +W+SMI GY  +  + +   +F +M  + +  + V
Sbjct: 463 YSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAV 522

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496
           T+ +ILPAC  IG+++  K LHG+S++  L+    V +A+   Y+K G I+ A ++F + 
Sbjct: 523 TVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQT 582

Query: 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556
           K   ++ +T+ +MI  Y +HG   +   L+  M++S ++PD ITF+ +L+AC  +GL++E
Sbjct: 583 K--ERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDE 640

Query: 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSA 615
           G  IF+EM+E Y  +PS EHY  + ++LGR G ++EA E VK +  + + A +WG LL +
Sbjct: 641 GLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGS 700

Query: 616 CKMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
           CK+H E ELAE  +E+L   +     +G  VLLSN+YA   KW  V K+R  +R++GLKK
Sbjct: 701 CKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKK 760

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
             G S IEI   V+ F + DQ HP +  IY ++
Sbjct: 761 EVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVI 793



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 150/582 (25%), Positives = 294/582 (50%), Gaps = 46/582 (7%)

Query: 79  GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF-- 136
           G   L++Q+F++I  P ++L+ TI+          + LL Y +M   + +   D Y +  
Sbjct: 53  GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFEN-EKGMIQRKFK 195
            +++C+   +  +G+ +H  +++   +S   V ++L+  Y+ C    +  E  ++++ F 
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFD 172

Query: 196 DLKSR----WNSLISLAVQNGKSEKSFELFK-LMRMEGAEFDSGTLINLLRSTVELKSLE 250
           +++ +    WN+LIS  V+ G++ ++   F  +MRME  +    + +N+  +    +S++
Sbjct: 173 NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRME-VKPSPVSFVNVFPAVSISRSIK 231

Query: 251 LGRIVH--CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
              + +   + +  ++ KDL V ++ +SMY++L  +E ++ +FD   +++  VWN MI  
Sbjct: 232 KANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGV 291

Query: 309 YYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
           Y Q+    ES+EL +  + S    +D  T + A S++S ++ +E G+Q H  V +N  + 
Sbjct: 292 YVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFREL 351

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            + + NSL+ MY  C  ++ +  +F S++ + VVSW++MI  +V +    E L L  EM+
Sbjct: 352 PIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 411

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            +G ++D++T+  +L A  N+   E  K  H + ++ G+     +N+ +   Y+K G I 
Sbjct: 412 KQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQ-FEGMNSYLIDMYSKSGLIR 470

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
           ++ +LF+      +D  TWNSMIS Y ++G   + F ++ +M + ++RP+ +T   +L A
Sbjct: 471 ISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPA 530

Query: 548 CVNAGLVEEGR------------------------------IIFKEMKESYGYEPSQEHY 577
           C   G V+ G+                              I + E   S   E +   Y
Sbjct: 531 CSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTY 590

Query: 578 ASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
            +M+   G+ G  + A  L   M     KPDA  +  +LSAC
Sbjct: 591 TTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSAC 632



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 196/399 (49%), Gaps = 17/399 (4%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY-------EKT 115
           ++L + S+ I  YA LG +  S++VF+S    N  ++ T++      G Y       E  
Sbjct: 249 KDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMI------GVYVQNDCLVESI 302

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
            L  + +  + +   E TY     + S L     G + H  V K   +    + ++L+  
Sbjct: 303 ELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVM 362

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
           Y +C    ++    +  + +D+ S WN++IS  VQNG  ++   L   M+ +G + D  T
Sbjct: 363 YSRCGSVHKSFGVFLSMRERDVVS-WNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYIT 421

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD--K 293
           +  LL +   L++ E+G+  H   ++    +   +N+ L+ MYSK   +  ++ LF+   
Sbjct: 422 VTALLSAASNLRNKEIGKQTHAF-LIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSG 480

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
            +++D+  WN MIS Y Q+G  +++  +   M+    R +  T  + + + S + +++ G
Sbjct: 481 YAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLG 540

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           KQ+H   +R   D  V V ++L+DMY +   +  A  +F   K +  V++++MI GY  H
Sbjct: 541 KQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQH 600

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
                A+ LF  M+  G++ D +T + +L AC   G ++
Sbjct: 601 GMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLID 639



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 121/244 (49%), Gaps = 16/244 (6%)

Query: 382 CEDLN--CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG--VEVDFVT 437
           C+D N   AR++FD++   T V W+++I G++ ++   EAL  +S MK        D  T
Sbjct: 50  CQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYT 109

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC----GCIE--MAGE 491
             + L AC     L+  K +H + ++   NS   V+ ++   Y  C     C E  +  +
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRK 169

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FD   +  K+++ WN++IS Y K G  ++  + +  M + +V+P  ++F+ +  A   +
Sbjct: 170 VFD--NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSIS 227

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
             +++  + +  M +  G E  ++ +  +S +++    G ++ +R  V D   + +  VW
Sbjct: 228 RSIKKANVFYGLMLK-LGDEYVKDLFVVSSAISMYAELGDIESSRR-VFDSCVERNIEVW 285

Query: 610 GPLL 613
             ++
Sbjct: 286 NTMI 289



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 11/139 (7%)

Query: 12  QSGHVK-----FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQ 63
           Q+GH +     F +      RP+  A    S+L  C     +   +Q+H  + I   L Q
Sbjct: 498 QNGHTEKTFLVFRKMLEQNIRPN--AVTVASILPACSQIGSVDLGKQLHG-FSIRQYLDQ 554

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           N+ ++S L+D Y+  G +  ++ +F+     NS+ Y T++    + G  E+ + ++  M 
Sbjct: 555 NVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQ 614

Query: 124 LQSMYPAEDTYPFVIRSCS 142
              + P   T+  V+ +CS
Sbjct: 615 ESGIKPDAITFVAVLSACS 633


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 181/550 (32%), Positives = 311/550 (56%), Gaps = 9/550 (1%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG-FENEKGMIQR 192
           Y  ++++C+  + F  G + H+  +K G D+   VG++L+  Y K     FE  +     
Sbjct: 63  YASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGL 122

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
            +KDL S W S+I+  V+  K +KS ELF  M   G E +  TL  ++++   L  L LG
Sbjct: 123 FYKDLIS-WTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLG 181

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           +  H V +V  F  +  ++TAL+ MY + ++++DA ++F ++   D + W  +ISA+ ++
Sbjct: 182 KCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRN 241

Query: 313 GFPKESLELLMCMVRS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
               ++L     M R  G   D FT    +++   +  ++ GK++HA V+ +G    V V
Sbjct: 242 DVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFV 301

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            +SL+DMY +C  +N ++ +FD +  K +VSW++++ GY  +      +R+F E    G 
Sbjct: 302 ESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFRE----GK 357

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           +VD  +   +L AC  + A+   K +H   +K          +A+   YAKCGCI+ A  
Sbjct: 358 KVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYR 417

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F   ++  +++ITWNSMI  +A++G   + F+L+ +M +  +RPD I+F+G+L AC +A
Sbjct: 418 IF--VRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHA 475

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           GLV++G+  F  M E Y  +P  EHY  M++LLGRAG ++EA  L+++   + +  +W  
Sbjct: 476 GLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTV 535

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LL AC     +  AE  A+K + ++P++  +YV L+N+Y A G+W+   K+R  +  RG+
Sbjct: 536 LLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGV 595

Query: 672 KKTPGCSWIE 681
            K PG SWIE
Sbjct: 596 GKMPGTSWIE 605



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 145/304 (47%), Gaps = 22/304 (7%)

Query: 17  KFLRFPANQTRPHMTATHSFS---LLNLCENPQHLQQ---IHARYIILHGLHQNLILSSN 70
           K L F  +  R H  +   F+   +L  C N   L+Q   +HA+ +I  GL  N+ + S+
Sbjct: 246 KALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAK-VITSGLSGNVFVESS 304

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           L+D Y    L++ SQ VF+ ++  N + +  +L    + G++E  + ++++         
Sbjct: 305 LVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREG------KK 358

Query: 131 EDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENE 186
            DTY F  V+R+C+ L     G+++H Q VK     + DV    ALV+ Y KC       
Sbjct: 359 VDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRC--CWRDVVTESALVDLYAKCGCIDFAY 416

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           +  ++   ++L + WNS+I    QNG+  + F+LF  M  EG   D  + + +L +    
Sbjct: 417 RIFVRMSVRNLIT-WNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHA 475

Query: 247 KSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR-VVWNI 304
             ++ G +    +  V +    +     ++ +  +   LE+A+ L +  + +D   +W +
Sbjct: 476 GLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTV 535

Query: 305 MISA 308
           ++ A
Sbjct: 536 LLGA 539


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 176/480 (36%), Positives = 272/480 (56%), Gaps = 45/480 (9%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR-------ADLFTAIA 339
           A  +F ++ D +  + N MI AY Q+   ++++ + + M+R            D FT   
Sbjct: 65  AARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF 124

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD------ 393
            + +      +E GKQ+H +V+R+G D    V NSLI+MY    DL  A K+FD      
Sbjct: 125 LLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERD 184

Query: 394 -------------------------SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
                                    S+  KT+V+W++M+ GY T      A+  F  M+ 
Sbjct: 185 VVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQT 244

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           EG E D V+I+ +LPAC  +G LE  ++++ Y  + G+ + + +  A+   YAKCGCI+ 
Sbjct: 245 EGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQ 304

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTA 547
           A +LFD   +  KD+I+W+++I   A HG   +   L+T+M K+  VRP++ITF+GLL+A
Sbjct: 305 ALQLFD--GMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSA 362

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C  AGLV+EG   F  M + YG EP  EHY  +V+LLGR+G +  A +LV+DMP   DA+
Sbjct: 363 CSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAK 422

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VWG LLSAC+ H + + A L AE+L+ +EP++ GN V+L+N+YAAA +W+ VA  R  +R
Sbjct: 423 VWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIR 482

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRRESSEELKFS 727
            R ++KTPGCS IE+G +V EF A +    +   +  +L IL   +     +  E++ F+
Sbjct: 483 SRSMRKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHLA----DDEEDIDFA 538



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 209/493 (42%), Gaps = 90/493 (18%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           L  C   + L ++H   + L  + Q+  L++ ++        ++ + +VF  +  PN  L
Sbjct: 21  LRACVTFRDLLRVHGHVVRLR-ISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHL 79

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-------TYPFVIRSCSCLLDFISGE 151
           +  ++K  ++  ++   + VY +M      P +        TYPF++++C        G+
Sbjct: 80  HNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGK 139

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H  VV+ G                 CD        ++Q          NSLI +  + 
Sbjct: 140 QVHTHVVRSG-----------------CD-----SSAIVQ----------NSLIEMYTRA 167

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G    + ++F  MR                                        +D+   
Sbjct: 168 GDLALAHKVFDEMRE---------------------------------------RDVVSW 188

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             L+S +++L  +  A  LF+ M DK  V W  M+S Y   G    +++    M   GF 
Sbjct: 189 NMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFE 248

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D  + +A + + + +  +E G+ ++A   R+G      + N+L++MY +C  ++ A ++
Sbjct: 249 PDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQL 308

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIG- 449
           FD +  K V+SWS++I G   H ++ EA+ LF+EM+ EG V  + +T + +L AC   G 
Sbjct: 309 FDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGL 368

Query: 450 ---ALEHVKYLHG-YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
               L H   ++  Y ++ G+     V   +     + G I  A +L  +  + + D   
Sbjct: 369 VDEGLSHFDRMNDVYGVEPGVEHYGCVVDLL----GRSGQIRRALDLVRDMPVPA-DAKV 423

Query: 506 WNSMISAYAKHGD 518
           W S++SA   HGD
Sbjct: 424 WGSLLSACRSHGD 436


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 181/567 (31%), Positives = 311/567 (54%), Gaps = 10/567 (1%)

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G+++HA ++K GF     + + ++  Y+KC    + EK   +   +++ S WN LI   V
Sbjct: 69  GKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVS-WNILIRGIV 127

Query: 210 QNGKS-------EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
             G +       ++ F  FK M +E    DS T   L    V+   +++G  +HC AV  
Sbjct: 128 GCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKL 187

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
               D  V + L+ +Y++   +E+A+ +F  +  +D VVWN+MIS Y  +  P+E+  + 
Sbjct: 188 GLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMF 247

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M   G   D FT    +S   +++  ++GKQ+H ++LR   D  V V ++LI+MY + 
Sbjct: 248 NLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKN 307

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           E++  A ++FD++  + VV+W+++I GY    +  E ++L  EM  EG   D +TI + +
Sbjct: 308 ENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTI 367

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
             C  + A+      H +++K       SV  ++  +Y+KCG I  A + F   +    D
Sbjct: 368 SLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTR--EPD 425

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           +++W S+I+AYA HG   +  +++ +M    + PD I+FLG+L+AC + GLV +G   F 
Sbjct: 426 LVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHYFN 485

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M   Y   P   HY  +V+LLGR G ++EA E ++ MP + ++   G  +++C +H+  
Sbjct: 486 LMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAESNTLGAFVASCNLHANI 545

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
            LA+  AEKL ++EPE   NY ++SNIYA+   W+ V ++R  + ++   + PGCSWIEI
Sbjct: 546 GLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMMGNKCDARVPGCSWIEI 605

Query: 683 GKLVHEFWAADQSHPQADAIYTILGIL 709
              VH F + D+ HP+A  ++  L +L
Sbjct: 606 TNQVHSFVSNDKIHPKALEMHATLKML 632



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 149/574 (25%), Positives = 252/574 (43%), Gaps = 56/574 (9%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA ++I  G    L L + ++  Y        ++++F  ++  N + +  +++ +  
Sbjct: 70  KQLHA-HLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVG 128

Query: 109 FGE-------YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
            G+        ++    +K+M L+ + P   T+  +   C    D   G ++H   VKLG
Sbjct: 129 CGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLG 188

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKS 217
            D    VG  LV+ Y +C G  EN +    R F  ++ R    WN +IS    N   E++
Sbjct: 189 LDLDCFVGSVLVDLYAQC-GLVENAR----RVFLVVQHRDLVVWNVMISCYALNCLPEEA 243

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
           F +F LMR +GA  D  T  NLL     L+  + G+ VH   +   F  D+ V +AL++M
Sbjct: 244 FVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINM 303

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y+K  ++ DA  LFD M  ++ V WN +I  Y       E ++LL  M+R GF  D  T 
Sbjct: 304 YAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTI 363

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + +S    +  I    Q HA  +++     +SV NSLI  Y +C  +  A K F   + 
Sbjct: 364 SSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTRE 423

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
             +VSW+S+I  Y  H  + EA  +F +M   G+  D ++ + +L AC + G +   K L
Sbjct: 424 PDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLV--TKGL 481

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H +      N ++SV   +                         D   +  ++    ++G
Sbjct: 482 HYF------NLMTSVYKIV------------------------PDSGHYTCLVDLLGRYG 511

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-H 576
             ++ F+    M        L  F+       N GL +         ++ +  EP +  +
Sbjct: 512 LINEAFEFLRSMPMEAESNTLGAFVASCNLHANIGLAKWA------AEKLFTIEPEKNVN 565

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           YA M N+     H  +   + + M  K DARV G
Sbjct: 566 YAVMSNIYASHRHWSDVERVRRMMGNKCDARVPG 599



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 184/408 (45%), Gaps = 19/408 (4%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           N L+ + +   L  G+ +H   +   FC  LS+   +L +Y K    +DA+ LF+++S +
Sbjct: 55  NALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVR 114

Query: 298 DRVVWNIMISAYYQSGFPKES-------LELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           + V WNI+I      G   E+             M+      D  T            +I
Sbjct: 115 NVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHDI 174

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
           + G Q+H   ++ G D    V + L+D+Y +C  +  AR++F  V+ + +V W+ MI  Y
Sbjct: 175 DMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMISCY 234

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
             +    EA  +F+ M+ +G   D  T  N+L  C ++   +  K +HG+ ++L  +S  
Sbjct: 235 ALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDV 294

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            V +A+   YAK   I  A  LFD   I  ++++ WN++I  Y    + ++  KL  +M 
Sbjct: 295 LVASALINMYAKNENIVDAHRLFDNMVI--RNVVAWNTIIVGYGNRREGNEVMKLLREML 352

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL----GR 586
           +    PD +T    ++ C     + E          ++  + S + + S+ N L     +
Sbjct: 353 REGFSPDELTISSTISLCGYVSAITE-----TMQAHAFAVKSSFQEFLSVANSLISAYSK 407

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
            G +  A +  + +  +PD   W  L++A   H   + A    EK++S
Sbjct: 408 CGSITSACKCFR-LTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLS 454



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           +LL++C++ ++    +Q+H  +I+      +++++S LI+ YA    +  + ++F+++  
Sbjct: 264 NLLSICDSLEYYDFGKQVHG-HILRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVI 322

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + + TI+       E  + + + ++M  +   P E T    I  C  +       + 
Sbjct: 323 RNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETMQA 382

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA  VK  F  F  V ++L+  Y KC       K     +  DL S W SLI+    +G 
Sbjct: 383 HAFAVKSSFQEFLSVANSLISAYSKCGSITSACKCFRLTREPDLVS-WTSLINAYAFHGL 441

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           ++++ E+F+ M   G   D  + + +L +
Sbjct: 442 AKEATEVFEKMLSCGIIPDQISFLGVLSA 470


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 290/510 (56%), Gaps = 3/510 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I    Q    +    ++  M++     +  T + +L++        +G+ +H    
Sbjct: 53  WNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF 112

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  ++ V  +L+SMY+K   +  A+++FDK+ D+  V W  +IS Y Q+G P E+L 
Sbjct: 113 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 172

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M +   + D    ++ +++ + ++++  GK +H  V + G +++  +  SL  MY 
Sbjct: 173 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 232

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   +  AR  F+ ++   ++ W++MI GY  +    EA++LF EM  + + VD +T+ +
Sbjct: 233 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 292

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            + A   +G+LE  ++L GY  K      + VNT +   YAKCG I +A  +FD  ++  
Sbjct: 293 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD--RVAD 350

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD++ W+ MI  Y  HG   +   LY +MKQ+ V P+  TF+GLLTAC N+GLV+EG  +
Sbjct: 351 KDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWEL 410

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M + +G EP  +HY+ +V+LLGRAG++++A + +  MP KP   VWG LLSACK+H 
Sbjct: 411 FHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHR 469

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           +  L E+ AE+L  ++P N G+YV LSN+YA+A  W  VA +R  +  +GL K  G S I
Sbjct: 470 KVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 529

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILE 710
           EI   +  F   D+SHP++  I+  L  LE
Sbjct: 530 EINGNLETFQVGDRSHPKSKEIFEELDRLE 559



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 209/407 (51%), Gaps = 2/407 (0%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +HL Q++ + +I+ GLH+   L    I++  + G ++ + + F  ++ P+ LL+  I+K 
Sbjct: 1   KHLDQVYVQ-LIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 59

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++    +  + +Y  M +  ++P   T+ +V+++C        G++IH Q  K GF S 
Sbjct: 60  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 119

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V ++LV  Y K  G     + +  +        W S+IS  VQNG   ++  +FK MR
Sbjct: 120 VFVQNSLVSMYAKF-GQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 178

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
               + D   L++++ +   ++ L  G+ +H +        +  +  +L +MY+K   +E
Sbjct: 179 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A+  F++M   + ++WN MIS Y  +G+ +E+++L   M+    R D  T  +AV + +
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 298

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            + ++E  + +   + ++       V+  LIDMY +C  +  AR +FD V  K VV WS 
Sbjct: 299 QVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSV 358

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           MI GY  H    EA+ L++EMK  GV  +  T I +L AC N G ++
Sbjct: 359 MIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 405



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 167/339 (49%), Gaps = 4/339 (1%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A   F ++S+ D ++WN +I  Y Q       + + M M  S    + FT +  + +   
Sbjct: 38  AHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGG 97

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
                 GKQ+H    + G    V V NSL+ MY +   ++ AR +FD +  +TVVSW+S+
Sbjct: 98  TSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSI 157

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I GYV +   +EAL +F EM+   V+ D++ +++++ A  N+  L   K +HG   KLGL
Sbjct: 158 ISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGL 217

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                +  ++   YAK G +E+A   F+  +++  ++I WN+MIS YA +G   +  KL+
Sbjct: 218 EFEPDIVISLTTMYAKRGLVEVARFFFN--RMEKPNLILWNAMISGYANNGYGEEAIKLF 275

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M   ++R D IT    + A    G +E  R +   + +S  Y         ++++  +
Sbjct: 276 REMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKS-EYRDDTFVNTGLIDMYAK 334

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            G +  AR  V D     D  +W  ++    +H   + A
Sbjct: 335 CGSIYLAR-CVFDRVADKDVVLWSVMIMGYGLHGHGQEA 372



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 180/366 (49%), Gaps = 3/366 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIH +    +G   N+ + ++L+  YA  G +S ++ VF+ +     + + +I+    +
Sbjct: 105 KQIHGQ-TFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 163

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+  + L V+K+M   ++ P       V+ + + + D   G+ IH  V KLG +   D+
Sbjct: 164 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDI 223

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L   Y K  G  E  +    R  K     WN++IS    NG  E++ +LF+ M  + 
Sbjct: 224 VISLTTMYAK-RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 282

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              DS T+ + + ++ ++ SLEL R +      S++  D  VNT L+ MY+K  S+  A+
Sbjct: 283 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLAR 342

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD+++DKD V+W++MI  Y   G  +E++ L   M ++G   +  T I  +++     
Sbjct: 343 CVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSG 402

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI 407
            ++ G ++   +  +G +     ++ ++D+      LN A     S+  K  VS W +++
Sbjct: 403 LVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALL 462

Query: 408 KGYVTH 413
                H
Sbjct: 463 SACKIH 468



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           D+N A K F  V    ++ W+++IKGY   +     +R++ +M++  V  +  T + +L 
Sbjct: 34  DVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLK 93

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC         K +HG + K G  S   V  ++   YAK G I  A  +FD  K+  + +
Sbjct: 94  ACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD--KLHDRTV 151

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W S+IS Y ++GD  +   ++ +M+Q +V+PD I  + ++TA  N   + +G+ I   
Sbjct: 152 VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSI-HG 210

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +    G E   +   S+  +  + G ++ AR     M  KP+  +W  ++S 
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISG 261


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 193/571 (33%), Positives = 295/571 (51%), Gaps = 66/571 (11%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I      G+  K+  +   M  EG E    TL N+L S    + LE G+ VH   V
Sbjct: 114 WTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIV 173

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM-------------------------- 294
                 ++SV+ +LL+MY+K      AK++FD+M                          
Sbjct: 174 KLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMA 233

Query: 295 -----SDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMK 348
                +++D V WN MIS Y Q G+   +L++   M+R S    D FT  + +S+ + ++
Sbjct: 234 QFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLE 293

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE------------------------- 383
            +  G+Q+H++++  G D    V N+LI MY  C                          
Sbjct: 294 KLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTAL 353

Query: 384 --------DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
                   D+N A+ IFDS+K + VV+W++MI GY  H    EA+ LF  M  E    + 
Sbjct: 354 LDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNS 413

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+  +L    ++ +L H K +HG ++K G     SV+ A+   YAK G I  A   FD 
Sbjct: 414 YTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDL 473

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
            + + +D ++W SMI A A+HG   +  +L+  M    +RPD IT++G+ +AC +AGLV 
Sbjct: 474 IRCE-RDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVN 532

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +GR  F  MK+     P+  HYA MV+L GRAG + EA+E ++ MP +PD   WG LLSA
Sbjct: 533 QGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C+++   +L ++ AE+L+ +EPEN+G Y  L+N+Y+A GKW   AK+R  ++D  +KK  
Sbjct: 593 CRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQ 652

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           G SWIE+   VH F   D  HPQ + IY  +
Sbjct: 653 GFSWIEVKHKVHAFGVEDGIHPQKNEIYITM 683



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 232/511 (45%), Gaps = 69/511 (13%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++ +YA  G +  S + F+ +   +S+ + T++      G+Y K + +  +M  + + 
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P++ T   V+ S +      +G+K+H+ +VKLG      V ++L+  Y KC      +  
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 189 MIQRKFKDLKS------------------------------RWNSLISLAVQNGKSEKSF 218
             +   KD+ S                               WNS+IS   Q G   ++ 
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 219 ELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF------------- 264
           ++F K++R      D  TL ++L +   L+ L +G  +H   V + F             
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 265 ------------------CKDLSVN--TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
                              KDL +   TALL  Y KL  + +AK +FD + D+D V W  
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTA 383

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MI  Y Q G   E++ L   MV    R + +T  A +S  S++ ++  GKQ+H + +++G
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-KTVVSWSSMIKGYVTHDQSLEALRLF 423
             Y VSV N+LI MY +   +  A + FD ++  +  VSW+SMI     H  + EAL LF
Sbjct: 444 EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG--LNSLSSVNTAIFISYA 481
             M +EG+  D +T + +  AC + G +   +        +   + +LS     + + + 
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL-FG 562

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
           + G ++ A E  ++  I+  D++TW S++SA
Sbjct: 563 RAGLLQEAQEFIEKMPIEP-DVVTWGSLLSA 592



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 180/421 (42%), Gaps = 65/421 (15%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
            S NT +LS Y+K   ++ +   FD++  +D V W  MI  Y   G   +++ ++  M+R
Sbjct: 81  FSWNT-VLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMR 139

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            G     FT    ++S++  + +E GK++H+ +++ G    VSV NSL++MY +C D   
Sbjct: 140 EGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 388 ARKIFDSVKTK-------------------------------TVVSWSSMIKGYVTHDQS 416
           A+ +FD +  K                                +V+W+SMI GY      
Sbjct: 200 AKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYD 259

Query: 417 LEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
           L AL +FS+M  +  +  D  T+ ++L AC N+  L   + +H + +  G +    V  A
Sbjct: 260 LRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNA 319

Query: 476 IFISYAKCGCIEMAGELFDE-------------------------------EKIDSKDII 504
           +   Y++CG +E A  L ++                               + +  +D++
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVV 379

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            W +MI  Y +HG + +   L+  M   + RP+  T   +L+   +   +  G+ I    
Sbjct: 380 AWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSA 439

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            +S G   S     +++ +  +AG +  A      +  + D   W  ++ A   H   E 
Sbjct: 440 VKS-GEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEE 498

Query: 625 A 625
           A
Sbjct: 499 A 499


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 279/524 (53%), Gaps = 71/524 (13%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLE---DAKMLFDKMSDKDR------------ 299
           +HC  + S     LSV+ AL+++Y K  + E   DA+ + D+M DKD             
Sbjct: 187 LHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVR 246

Query: 300 -------------------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
                              VVWN MIS Y QSG   ++ EL   MV      D FT  + 
Sbjct: 247 RGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSV 306

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVK 396
           +S+ +       GK +H  ++R   ++     + V+N+L+ +Y +   +  A++IFD++ 
Sbjct: 307 LSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 366

Query: 397 TKTVVSWSS-------------------------------MIKGYVTHDQSLEALRLFSE 425
            K VVSW++                               M+ GYV    S +AL+LF++
Sbjct: 367 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 426

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+ E V+    T    + AC  +GAL+H + LH + ++ G  + +S   A+   YAKCG 
Sbjct: 427 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 486

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +  A  +F    + + D ++WN+MISA  +HG   +  +L+ QM    + PD I+FL +L
Sbjct: 487 VNDARLVF--LVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           TAC +AGLV+EG   F+ MK  +G  P ++HYA +++LLGR+G + EAR+L+K MPF+P 
Sbjct: 545 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 604

Query: 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
             +W  +LS C+ + + E     A++L  M P++ G Y+LLSN Y+AAG+W   A++R  
Sbjct: 605 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 664

Query: 666 LRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           +RDRG+KK PGCSWIE+G  +H F   D  HP+A  +Y  L ++
Sbjct: 665 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVI 708



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/527 (22%), Positives = 232/527 (44%), Gaps = 75/527 (14%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQM- 122
           + +++L+ ++A  G L  +   F+++     +++L+  ++   ++       + V+  + 
Sbjct: 95  VAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALL 154

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGE--KIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
              S+ P + ++  +I +   + +  +    ++H  V+K G  +   V +AL+  Y+KCD
Sbjct: 155 GSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCD 214

Query: 181 ---GGFENEK------------------GMIQRK--------FKDLKSR----WNSLISL 207
                ++  K                  G ++R         F+++  +    WN++IS 
Sbjct: 215 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 274

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSDFC 265
            VQ+G    +FELF+ M  E    D  T  ++L +         G+ VH   + +  +F 
Sbjct: 275 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFV 334

Query: 266 KD--LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323
            +  L VN AL+++YSK   +  AK +FD M+ KD V WN ++S Y  SG   +++E+  
Sbjct: 335 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFK 394

Query: 324 CM---------------VRSGFRADL----------------FTAIAAVSSISTMKNIEW 352
            M               V  G   D                 +T   A+++   +  ++ 
Sbjct: 395 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKH 454

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+Q+HA++++ G +   S  N+L+ MY +C  +N AR +F  +     VSW++MI     
Sbjct: 455 GRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQ 514

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSS 471
           H    EAL LF +M  EG++ D ++ + IL AC + G + E   Y        G++    
Sbjct: 515 HGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGED 574

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
               +     + G I  A +L      +    I W +++S    +GD
Sbjct: 575 HYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI-WEAILSGCRTNGD 620



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 3/179 (1%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++++  + ++  Y + G L  + +VF  +   N L +  ++      G  E  L ++ QM
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 427

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             + + P + TY   I +C  L     G ++HA +V+ GF++ +  G+AL+  Y KC  G
Sbjct: 428 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC--G 485

Query: 183 FENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
             N+  ++     +L S  WN++IS   Q+G   ++ ELF  M  EG + D  + + +L
Sbjct: 486 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 47/301 (15%)

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQ 415
           A + R+  D       SL+  +     L  A   FD+V    +  V  ++M+  +     
Sbjct: 83  AALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASL 142

Query: 416 SLEALRLFSEM----KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
           +  A+ +F  +     L   +  F  +I+ +    N+ A  H   LH   +K G  ++ S
Sbjct: 143 AAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAA-PHCTQLHCSVLKSGAAAVLS 201

Query: 472 VNTAIFISYAKCGCIEM---AGELFDEEKIDSKDIITWNSMISAYAKHGD---------- 518
           V+ A+   Y KC   E    A ++ DE  +  KD +TW +M+  Y + GD          
Sbjct: 202 VSNALIALYMKCDTPEASWDARKVLDE--MPDKDDLTWTTMVVGYVRRGDVNAARSVFEE 259

Query: 519 --------W-------------SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
                   W             +  F+L+ +M    V  D  TF  +L+AC NAG    G
Sbjct: 260 VDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHG 319

Query: 558 RIIFKE---MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           + +  +   ++ ++  E +     ++V L  + G +  A+ +   M  K D   W  +LS
Sbjct: 320 KSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILS 378

Query: 615 A 615
            
Sbjct: 379 G 379


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 195/648 (30%), Positives = 343/648 (52%), Gaps = 11/648 (1%)

Query: 37   SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            S++  CEN  +    + +HA +++ + L   L +++ L+  YA LG L+ +  +F  +  
Sbjct: 362  SIIPCCENSANFWYGKSLHA-HVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPR 420

Query: 94   PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             N L + +++      G +E ++  +  M  +   P   +   ++ +CS L   + G+  
Sbjct: 421  RNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAA 480

Query: 154  HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
            HA   +  FDS  ++ +AL+ FY  C G   +   + Q+        WN+LIS  V NG 
Sbjct: 481  HAFSFRKEFDSNLNISNALLAFYSDC-GKLSSSFKLFQKMPLRNAISWNTLISGCVHNGD 539

Query: 214  SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            ++K+  L   M+ E  E D  TLI+++      ++L  G  +H  A+ + F  D+S+  A
Sbjct: 540  TKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLVNA 599

Query: 274  LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
            L+SMY     +   K LF+ M  +  V WN +I+ Y       E +     M+R G + +
Sbjct: 600  LISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPN 659

Query: 334  LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
              T +  + S  T+     GK +HA  +R G   +  +  SLI MY   E++N    +F+
Sbjct: 660  YVTLLNLLPSCRTLLQ---GKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLFE 716

Query: 394  SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
                + +  W++++  YV    + E++  F E+    VE D++T ++++ ACV + +L  
Sbjct: 717  MGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNL 776

Query: 454  VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
               +  Y ++ G +    ++ A+   +A+CG I +A ++F  E + SKD ++W++MI+ Y
Sbjct: 777  SNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIF--EGLSSKDAVSWSTMINGY 834

Query: 514  AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
              HGD      L +QM+ S ++PD IT+  +L+AC + G +++G +IF  M E  G    
Sbjct: 835  GLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEE-GVPRR 893

Query: 574  QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
             EHYA MV+LLGR G ++EA + V+ +P KP   +   LL AC +H   +L E  +  L 
Sbjct: 894  MEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLGACIIHGNVKLGEKISSLLF 953

Query: 634  SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
             ++P+N+G+YV+L NIYAAAG+W    ++R+ + +R L+K PG S +E
Sbjct: 954  ELDPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRKIPGFSLVE 1001



 Score =  248 bits (633), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 168/628 (26%), Positives = 323/628 (51%), Gaps = 14/628 (2%)

Query: 24  NQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL 83
           N + P +T+     L +LC N ++L+ + +  I+   +    +++  +I  + +LG   L
Sbjct: 51  NSSNPKVTSF--LRLFDLCRNIENLKPLGSVLIVRDLMRDEYVVAEFIISCF-HLGAPEL 107

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCS 142
           +   F +I  P+  L   +++ L   G +E  L VY +  +    P++D T+PFVI++C+
Sbjct: 108 ALSAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLGC-PSDDFTFPFVIKACT 166

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWN 202
            L      E +H  V++  F+    +  ALV+FY K  G     + ++ +  +     WN
Sbjct: 167 ALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAK-TGRMVKARLVLDKISQPDLVTWN 225

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +LIS    NG  ++ FE+ + +   G + +  T  +++     +K L++G+ +H   V S
Sbjct: 226 ALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKS 285

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
            F  D  +  AL+SMY+   +L  A+ LFD  ++K+ V+WN MISAY Q+    E+ ++ 
Sbjct: 286 GFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMF 345

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M+++  + ++ T ++ +       N  +GK +HA+V++   D Q+SV  +L+ MY + 
Sbjct: 346 QQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKL 405

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA-LRLFSEMKLEGVEVDFVTIINI 441
            DLN A  IF  +  + ++SW+SMI GY  H+   EA +  F +M+ EG + D ++I+NI
Sbjct: 406 GDLNSADFIFYQMPRRNLLSWNSMISGY-GHNGLWEASMDAFCDMQFEGFDPDAISIVNI 464

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L AC  + A+   K  H +S +   +S  +++ A+   Y+ CG +  + +LF  +K+  +
Sbjct: 465 LSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLF--QKMPLR 522

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           + I+WN++IS    +GD  +   L  +M+Q  +  DL+T + ++  C  A  + +G  + 
Sbjct: 523 NAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLH 582

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
               ++ G+        +++++    G ++  + L + MP++     W  L++  + H  
Sbjct: 583 GYAIKT-GFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVS-WNALITGYRFHYL 640

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNI 649
               E+ A     +      NYV L N+
Sbjct: 641 QN--EVMASFCQMIREGQKPNYVTLLNL 666



 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/607 (27%), Positives = 312/607 (51%), Gaps = 14/607 (2%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S++ LC   + L   + IH  +++  G   +  L+  LI  YA  G L +++ +F+S   
Sbjct: 261 SIIPLCTRMKCLDIGKSIHG-FVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAE 319

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N +++ +++   ++  +  +   +++QM   +M P   T+  +I  C    +F  G+ +
Sbjct: 320 KNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSL 379

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA V+K   DS   V  AL+  Y K       +    Q   ++L S WNS+IS    NG 
Sbjct: 380 HAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLS-WNSMISGYGHNGL 438

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            E S + F  M+ EG + D+ +++N+L +  +L+++ LG+  H  +   +F  +L+++ A
Sbjct: 439 WEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNA 498

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           LL+ YS    L  +  LF KM  ++ + WN +IS    +G  K+++ LL  M +     D
Sbjct: 499 LLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELD 558

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
           L T I+ +      +N+  G  +H   ++ G    VS+ N+LI MY  C D+N  + +F+
Sbjct: 559 LVTLISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFE 618

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  +++VSW+++I GY  H    E +  F +M  EG + ++VT++N+LP+C     L  
Sbjct: 619 VMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSC---RTLLQ 675

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            K +H ++++ G+   + + T++   YA+   I     LF  E    +DI  WN+++S Y
Sbjct: 676 GKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLF--EMGGKEDIALWNAIMSVY 733

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
            +  +  +    + ++  + V PD ITFL L++ACV    +     +   + +  G++  
Sbjct: 734 VQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVIQK-GFDKH 792

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH--SETELAELTAEK 631
                ++++L  R G++  A+++ + +  K DA  W  +++   +H  SE  LA L+  +
Sbjct: 793 IVISNALIDLFARCGNISIAKKIFEGLSSK-DAVSWSTMINGYGLHGDSEAALALLSQMR 851

Query: 632 LISMEPE 638
           L  M+P+
Sbjct: 852 LSGMKPD 858


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/664 (29%), Positives = 343/664 (51%), Gaps = 4/664 (0%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           A ++I+ GL   + ++++LI  + NLG +  ++++F+ +   +++    ++   S  G  
Sbjct: 168 ASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGIC 227

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
            K  LV+  M    + P   T   ++  C+    F  G  IH+  ++   DS   V +AL
Sbjct: 228 SKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINAL 287

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           V  Y       + E        +DL S WN++IS  VQN  S  + +    +       +
Sbjct: 288 VNMYSAAGKLSDAEFLFWNMSRRDLIS-WNTMISSYVQNCNSTDALKTLGQLFHTNEIPN 346

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T  + L +     +L  G++VH + +     ++L V  +L++MY K  S+EDA+ +F 
Sbjct: 347 HLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ 406

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE- 351
            M   D V +N++I  Y       +++++   +  +G + +  T I    S ++  ++  
Sbjct: 407 SMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHN 466

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
           +G+ +HA ++R G      V NSLI MY +C +L  +  IF+S+  K +VSW+++I    
Sbjct: 467 YGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANA 526

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471
                 EAL+LF +M+  G ++D V +   L +C ++ +LE    LHG  MK GL+S S 
Sbjct: 527 QLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSY 586

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           V  A    Y KCG +    ++  ++ I  +    WN++IS YAK+G + +  + + QM  
Sbjct: 587 VVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQ--CWNTLISGYAKYGYFKEAEETFKQMVA 644

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
              +PD +TF+ LL+AC +AGLV++G   +  M  S+G  P  +H   +V+LLGR G   
Sbjct: 645 MGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFA 704

Query: 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651
           EA   +++MP  P+  +W  LLS+ + H   E+    A+KL+ ++P +   YVLLSN+YA
Sbjct: 705 EAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYA 764

Query: 652 AAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
              +W  V K+R+ ++   + K P CSW+++   V  F   D+ H  A+ IY  L  + L
Sbjct: 765 TNARWVDVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLL 824

Query: 712 EIME 715
           ++ E
Sbjct: 825 KLRE 828



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 165/619 (26%), Positives = 312/619 (50%), Gaps = 13/619 (2%)

Query: 37  SLLNLCENPQHLQQIH---ARYIILH--GLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
           SL+  CE     + I    A + + H  GL  N+ + + L+  Y + G++S ++++F  +
Sbjct: 46  SLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEM 105

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              N + +  ++  LS  G  E+TL  Y+QM  + +    + +  V+  C  L + + G 
Sbjct: 106 PERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGL 165

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++ + V+  G  +   V ++L+  +       + EK   + +  D  SR N++IS+    
Sbjct: 166 QVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISR-NAMISMYSHQ 224

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   K F +F  MR  G   D+ TL +L+           G  +H + + S     ++V 
Sbjct: 225 GICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVI 284

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            AL++MYS    L DA+ LF  MS +D + WN MIS+Y Q+    ++L+ L  +  +   
Sbjct: 285 NALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEI 344

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T  +A+ + S+   +  GK +HA VL+      + V NSLI MY +C  +  A K+
Sbjct: 345 PNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKV 404

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F S+ T  VVS++ +I GY   +   +A+++FS ++  G++ +++T+INI  +  +   L
Sbjct: 405 FQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDL 464

Query: 452 EHV-KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
            +  + LH Y ++ G  S   V  ++   YAKCG +E +  +F+   I +K+I++WN++I
Sbjct: 465 HNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFN--SITNKNIVSWNAII 522

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +A A+ G   +  KL+  M+ +  + D +     L++C +   +EEG +    +    G 
Sbjct: 523 AANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEG-MQLHGLGMKSGL 581

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +       + +++ G+ G M+E  ++V D   +P  + W  L+S    +   + AE T +
Sbjct: 582 DSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQ-QCWNTLISGYAKYGYFKEAEETFK 640

Query: 631 KLISM--EPENAGNYVLLS 647
           ++++M  +P+      LLS
Sbjct: 641 QMVAMGRKPDYVTFVALLS 659



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 199/406 (49%), Gaps = 6/406 (1%)

Query: 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTVELKSLELGRIV 255
           S W + +S  V+ G+   +FEL + MR  G   + F   +L+         + +  G  +
Sbjct: 7   STWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAI 66

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H +   +    ++ + TALL +Y     + DA+ LF +M +++ V W  ++ A   +G+ 
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYL 126

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSL 375
           +E+L     M R G   +       VS   +++N   G Q+ ++V+ +G   QVSV NSL
Sbjct: 127 EETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSL 186

Query: 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           I M+     +  A K+FD ++    +S ++MI  Y       +   +FS+M+  G+  D 
Sbjct: 187 ITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDA 246

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+ +++  C +     H   +H   ++  L+S  +V  A+   Y+  G +  A  LF  
Sbjct: 247 TTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF-- 304

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             +  +D+I+WN+MIS+Y ++ + +   K   Q+  ++  P+ +TF   L AC + G + 
Sbjct: 305 WNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALI 364

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+++   + +    + +     S++ + G+   M++A ++ + MP
Sbjct: 365 DGKMVHAIVLQ-LSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 409


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/652 (30%), Positives = 344/652 (52%), Gaps = 28/652 (4%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
           LI +   + ++ +L         F+ I + +   +  ++    + G   + +  +    L
Sbjct: 19  LICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 78

Query: 125 QS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            S + P   T+P V+++C  ++D   G KIH   +K GF     V  +L+  Y +     
Sbjct: 79  SSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 135

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
                  +   +D+ S WN++IS   Q+G ++++  L   +R      DS T+++LL + 
Sbjct: 136 NARILFDEMPVRDMGS-WNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSAC 190

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
            E      G  +H  ++      +L               L D + +FD+M  +D + WN
Sbjct: 191 TEAGDFNRGVTIHSYSIKHGLESEL---------------LRDCQKVFDRMYVRDLISWN 235

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            +I AY  +  P  ++ L   M  S  + D  T I+  S +S + +I   + +    LR 
Sbjct: 236 SIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK 295

Query: 364 GSDYQ-VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
           G   + +++ N+++ MY +   ++ AR +F+ +    V+SW+++I GY  +  + EA+ +
Sbjct: 296 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEM 355

Query: 423 FSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           ++ M+ EG +  +  T +++LPAC   GAL     LHG  +K GL     V T++   Y 
Sbjct: 356 YNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 415

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A  LF   +I   + + WN++I+ +  HG   +   L+ +M    V+PD ITF
Sbjct: 416 KCGRLEDALSLF--YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 473

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + LL+AC ++GLV+EG+  F+ M+  YG  PS +HY  MV++ GRAG ++ A + +K M 
Sbjct: 474 VTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMS 533

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
            +PDA +WG LLSAC++H   +L ++ +E L  +EPE+ G +VLLSN+YA+AGKW GV +
Sbjct: 534 LQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDE 593

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +R+    +GL+KTPG S +E+   V  F+  +Q+HP  + +Y  L  L+ ++
Sbjct: 594 IRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKL 645



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 120/253 (47%), Gaps = 12/253 (4%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +++ + + ++  YA LGL+  ++ VFN + + + + + TI+   ++ G   + + +Y  M
Sbjct: 300 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 359

Query: 123 ALQSMYPA-EDTYPFVIRSCSCLLDFISGEKIHAQVVKLG--FDSFDDVGDALVEFYIKC 179
             +    A + T+  V+ +CS       G K+H +++K G   D F  V  +L + Y KC
Sbjct: 360 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVF--VVTSLADMYGKC 417

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G  E+   +  +  +     WN+LI+    +G  EK+  LFK M  EG + D  T + L
Sbjct: 418 -GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 476

Query: 240 LRSTVELKSLELGRIVHCVAVV-SDF--CKDLSVNTALLSMYSKLASLEDAKMLFDKMS- 295
           L +      ++ G+   C  ++ +D+     L     ++ MY +   LE A      MS 
Sbjct: 477 LSACSHSGLVDEGQW--CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 534

Query: 296 DKDRVVWNIMISA 308
             D  +W  ++SA
Sbjct: 535 QPDASIWGALLSA 547



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 37  SLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L  C     L+Q   +H R ++ +GL+ ++ + ++L D Y   G L  +  +F  I  
Sbjct: 374 SVLPACSQAGALRQGMKLHGR-LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 432

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142
            NS+ + T++      G  EK ++++K+M  + + P   T+  ++ +CS
Sbjct: 433 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS 481


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/685 (28%), Positives = 366/685 (53%), Gaps = 25/685 (3%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL--SQQVFNSITSPN 95
           LL  C    H+  +HA     H    +L L ++L+ +Y  LG+ +   + ++ + +   N
Sbjct: 8   LLRSCTALPHVAAVHAHIARAHPT-ASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRN 66

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLLDFISGEKIH 154
           ++ Y  ++ + S+ G   + L  + +    +    +  TY   + +CS  LD  +G+ +H
Sbjct: 67  AVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVH 126

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           A  V  G  +   + ++L   Y  C      E G  +R F   +      WNSL+S  V+
Sbjct: 127 AMTVLDGLGNGVFLSNSLASMYASC-----GEMGEARRVFDAAEEHDDVSWNSLLSGYVR 181

Query: 211 NGKSEKSFELFKLMRMEGAEFDS---GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD 267
            G  E++ ++F LM   G  ++S   G++I    S  ++    +   VH   V +    D
Sbjct: 182 AGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGR-HIAEAVHGCVVKAGLDAD 240

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG------FPKESLEL 321
           L + +A++ MY+K  +L +A  LF  + D + +V+N MI+ + +          +E+L L
Sbjct: 241 LFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSL 300

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              M   G +   FT  + + + +      +GKQ+H  VL++       + ++LID+Y +
Sbjct: 301 YSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSD 360

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              +    + F S+  + +V+W+SMI G V ++   +ALRLF E    G++ D  T+ ++
Sbjct: 361 SGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSV 420

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           + AC ++      + +   ++K G N  +++  +     A+ G ++     F E  ++S+
Sbjct: 421 MNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQE--MESR 478

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+++W+++IS++A+HG      +++ +M  + V P+ +TFL +LTAC + GLV++G   +
Sbjct: 479 DVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYY 538

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           + MK  YG  P+ +H   +V+LLGRAG + +A   ++D  F  DA VW  LL++C++H +
Sbjct: 539 EIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGD 598

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
            E  +L A++++ +EP ++ +YV+L N+Y  AG+ +  +K R  +++RG+KK PG SWIE
Sbjct: 599 MERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIE 658

Query: 682 IGKLVHEFWAADQSHPQADAIYTIL 706
           +   VH F A D+SHP+++AIY  L
Sbjct: 659 LRSGVHSFVAGDKSHPESNAIYKKL 683


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 209/666 (31%), Positives = 350/666 (52%), Gaps = 33/666 (4%)

Query: 36  FSLLNLCENPQHL---QQIHARYIILHGLHQNLILSS-----NLIDSYANLGLLSLSQQV 87
            SLL  C   ++L   Q IH      H L ++L LSS     NL   YA+   + L++ V
Sbjct: 3   LSLLETCIRSRNLVLGQVIHQ-----HLLKRSLTLSSSTVLVNLTRLYASCNEVELARHV 57

Query: 88  FNSITSP--NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           F+ I  P  N + +  +++  +     EK L +Y +M    + P + TYPFV+++C+ L 
Sbjct: 58  FDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLR 117

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
               G+ IH+ V    F +   V  ALV+FY KC      E  M  + F ++  R    W
Sbjct: 118 AIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKC-----GELEMAIKVFDEMPKRDMVAW 172

Query: 202 NSLIS-LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           N++IS  ++    ++       + R++G   +  T++ +  +     +L  G+ VH    
Sbjct: 173 NAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCT 232

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  DL V T +L +Y+K   +  A+ +FD    K+ V W+ MI  Y ++   KE+ E
Sbjct: 233 RMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGE 292

Query: 321 LLMCMVRSGFRADLFTAIAA---VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377
           +   M+ +   A + T +A    +   +   ++  G+ +H   ++ G    ++V N++I 
Sbjct: 293 VFFQMLVNDNVA-MVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIIS 351

Query: 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT 437
            Y +   L  A + F  +  K V+S++S+I G V + +  E+ RLF EM+  G+  D  T
Sbjct: 352 FYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITT 411

Query: 438 IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           ++ +L AC ++ AL H    HGY +  G    +S+  A+   Y KCG +++A  +FD   
Sbjct: 412 LLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFD--T 469

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  +DI++WN+M+  +  HG   +   L+  M+++ V PD +T L +L+AC ++GLV+EG
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEG 529

Query: 558 RIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616
           + +F  M +  +   P  +HY  M +LL RAG++DEA + V  MPF+PD RV G LLSAC
Sbjct: 530 KQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSAC 589

Query: 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPG 676
             +   EL    ++K+ S+  E   + VLLSN Y+AA +W   A++R   + RGL KTPG
Sbjct: 590 WTYKNAELGNEVSKKMQSL-GETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPG 648

Query: 677 CSWIEI 682
            SW+++
Sbjct: 649 YSWVDV 654


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 207/652 (31%), Positives = 324/652 (49%), Gaps = 72/652 (11%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++  YA  G L  +   F SI  P+S  Y T+L  L           ++ +M      
Sbjct: 142 NTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEM------ 195

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGD-------ALVEFYIKCDG 181
           P +D+  + +         IS    H  +V L    FD   +        ++  Y++ +G
Sbjct: 196 PVKDSVSYNV--------MISSHANHG-LVSLARHYFDLAPEKDAVSWNGMLAAYVR-NG 245

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
             +  + +   + +     WN+L++  VQ  + E++ ++F  M     + D  +   ++ 
Sbjct: 246 RIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM----PQRDVVSWNTMVS 301

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV 301
                  +   R +  VA +    +D+   TA++S Y++   LE+AK +FD M DK+ V 
Sbjct: 302 GYARRGDMAEARRLFDVAPI----RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS 357

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           WN M++AY Q    +E+ EL   M                                    
Sbjct: 358 WNAMMAAYVQRRMMEEAKELFDAMP----------------------------------C 383

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
           RN     V+  N+++  Y +   L+ AR IF  +  K  VSW++M+  Y     S E L+
Sbjct: 384 RN-----VASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQ 438

Query: 422 LFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481
           LF EM   G  V+      +L  C +I ALE    LH   +K G      V  A+   Y 
Sbjct: 439 LFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYF 498

Query: 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
           KCG +E A   F+E  ++ +D+++WN+MI+ YA+HG   +  +++  M+++  +PD IT 
Sbjct: 499 KCGSMEEAHSAFEE--MEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITL 556

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +G+L AC ++GLVE+G   F  M   +G     EHY  M++LLGRAG +DEA  L+KDMP
Sbjct: 557 VGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMP 616

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661
           F+PD+ +WG LL A ++H  +EL    AEK+  +EPENAG YVLLSNIYA++GKW  V K
Sbjct: 617 FEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDK 676

Query: 662 MRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           MR  + +RG+KK PG SWIE+   VH F   D  HP+ + IY  L  L++ +
Sbjct: 677 MRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRM 728



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 121/249 (48%), Gaps = 5/249 (2%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           +N+   + ++  YA  G+L  ++ +F  +   +++ +  +L   S+ G  E+TL ++K+M
Sbjct: 384 RNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
                +     +  V+ +C+ +     G ++H++++K G+     VG+AL+  Y KC   
Sbjct: 444 GRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSM 503

Query: 183 FENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            E      + + +D+ S WN++I+   ++G  +++ E+F  MR    + D  TL+ +L +
Sbjct: 504 EEAHSAFEEMEERDVVS-WNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAA 562

Query: 243 TVELKSLELGRIVHCVAVVSDF--CKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDR 299
                 +E G I +  ++  DF         T ++ +  +   L++A  L   M  + D 
Sbjct: 563 CSHSGLVEKG-ISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDS 621

Query: 300 VVWNIMISA 308
            +W  ++ A
Sbjct: 622 TMWGALLGA 630


>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
          Length = 829

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 210/690 (30%), Positives = 358/690 (51%), Gaps = 46/690 (6%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y+   GLH  + ++S+L D Y   GLL  +++VF
Sbjct: 168 NFVVPNVCKACGALQWSRFGRGVHG-YVAKAGLHDCVFVASSLADMYGKCGLLDDARKVF 226

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I     + +  ++    + G  ++ + +   M  + + P   T    + + + +    
Sbjct: 227 DEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIE 286

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
            G++ HA  +  G +  + +G +++ FY K  G  E  + +  R  +     WN LIS  
Sbjct: 287 EGKQSHAIAIVNGLELDNILGTSILNFYCKV-GLIEYAEMIFDRMIEKDVVTWNLLISGY 345

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQ G  E +  + +LMR     FD  TL +L+ +     +L+LG+ V C  +   F  D+
Sbjct: 346 VQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSDI 405

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + +  + MY+K  S+ DAK +F+   +KD ++WN +++AY + G   E+L L   M   
Sbjct: 406 VLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQLE 465

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   ++ T  + + S+                LRNG   QV   N   DM+ + +     
Sbjct: 466 GVPPNVITWNSVILSL----------------LRNG---QV---NEAKDMFLQMQS---- 499

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
                S  +  ++SW++M+ G V +  S EA+    +M+  G+ ++  +I   L AC N+
Sbjct: 500 -----SGISPNLISWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANL 554

Query: 449 GALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
            +L   + +HGY ++   +S S S+ T++   YAKCG I  A  +F  +     ++  +N
Sbjct: 555 ASLHFGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGDISKAERVFGSKLYS--ELPLYN 612

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           +MISAYA +G+  +   LY  + +   + PD IT   +L+AC +AG + +   IF +M  
Sbjct: 613 AMISAYALYGNVKEATALYRSLDEDVGIEPDNITITNVLSACHHAGDINQAIHIFTDMVS 672

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +  +P  EHY  MV+LL  AG  ++A  L+++MP+KPDAR+   LL++C    ++EL E
Sbjct: 673 KHAMKPCLEHYGLMVDLLASAGETEKALRLIEEMPYKPDARMIQSLLASCNKQHKSELVE 732

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG--- 683
             +  L+  EPEN+GNYV +SN+YA  G W+ V KMR  ++ +GLKK PGCSWI+I    
Sbjct: 733 YLSRHLLESEPENSGNYVTISNVYAVEGSWDEVGKMREMMKVKGLKKKPGCSWIQIKGEE 792

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEI 713
           + VH F A D++H + + I  IL +L  E+
Sbjct: 793 QGVHVFVANDKTHFRNNEIRRILALLTYEM 822



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 257/514 (50%), Gaps = 14/514 (2%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           +P S+ Y   + +L K GE  + L +  +M  +++    + Y  +++ C    D  +G++
Sbjct: 27  NPPSISYFHRVSSLCKKGEIREALGLVTEMGSRNVRIGPEIYGEILQGCVYERDLSTGQQ 86

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLIS 206
           IHA+++K G  +   + +   LV FY KCD        + Q  F  L++R    W ++I 
Sbjct: 87  IHARILKNGDFYAKNEYIETKLVIFYAKCDA-----LEVAQLLFSKLRARNVFSWAAIIG 141

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
           +  + G  E +   F  M   G   D+  + N+ ++   L+    GR VH     +    
Sbjct: 142 VRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHD 201

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
            + V ++L  MY K   L+DA+ +FD++ D+  V WN ++  Y Q+G  +E++ LL  M 
Sbjct: 202 CVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMR 261

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
             G      T    +S+ + M  IE GKQ HA  + NG +    +  S+++ YC+   + 
Sbjct: 262 NEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIE 321

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            A  IFD +  K VV+W+ +I GYV      +A+ +   M+   +  D VT+ +++ A  
Sbjct: 322 YAEMIFDRMIEKDVVTWNLLISGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAA 381

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
               L+  K +  Y ++ G  S   + +     YAKCG I  A ++F+      KD+I W
Sbjct: 382 RTHNLKLGKEVQCYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTV--EKDLILW 439

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N++++AYA+ G   +  +L+ +M+   V P++IT+  ++ + +  G V E + +F +M+ 
Sbjct: 440 NTLLAAYAEPGLSGEALRLFYEMQLEGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQS 499

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           S G  P+   + +M+N L + G  +EA   ++ M
Sbjct: 500 S-GISPNLISWTTMMNGLVQNGCSEEAIVYLRKM 532


>gi|347954456|gb|AEP33728.1| chlororespiratory reduction 21, partial [Brassica oleracea]
          Length = 643

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 204/666 (30%), Positives = 351/666 (52%), Gaps = 51/666 (7%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           Y+   GL   + ++S+L D Y   G+L  +++VF+ I   N + +  ++    + G  E+
Sbjct: 9   YVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEE 68

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
            + +   M  + + P   T    + + + +     G+  HA  V  G +  + +G +++ 
Sbjct: 69  AIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNILGTSILN 128

Query: 175 FYIKCDGGFENEKGMIQRKF--KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           FY  C  G  +   M+  +   KD+ + WN LIS  VQ G  E +  + +LMR+E  +FD
Sbjct: 129 FY--CKVGLIDYAEMVFDRMIGKDVVT-WNLLISGYVQQGLVEDAIRMCQLMRLEKLKFD 185

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             TL  L+ +    ++ +LG+ V C  +   F  D+ + +A + MY+K  S+ DAK +FD
Sbjct: 186 CVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAKKVFD 245

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
               KD ++WN +++AY +SG   E+L L   M       ++ T    + S+        
Sbjct: 246 STVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSL-------- 297

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK----TVVSWSSMIK 408
                   LRNG                    ++ A+++F  +++     T+VSW++M+ 
Sbjct: 298 --------LRNGQ-------------------VDEAKEMFLQMQSSGIVPTIVSWTTMMN 330

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           G V +  S EA+    +M+  G+  +  +I   L AC N+ +L   + +HGY ++  L+S
Sbjct: 331 GLVXNGCSEEAIHYLRKMQESGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHS 390

Query: 469 LS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
            S S+ T++   YAKCG I  A ++F  +     ++  +N+MISAYA +G+  +   LY 
Sbjct: 391 SSVSIETSLVDMYAKCGDISKAEKVFRRKLF--SELPLYNAMISAYALYGNVEEAMALYG 448

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
            ++   ++PD ITF  +L+AC +AG + +   IF +M   +G +P  EHY  MV+LL  A
Sbjct: 449 SLEDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASA 508

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G  ++A  L+++MP++PDAR+   LL+ C    +TEL E  +++L+  EP+N+GNYV +S
Sbjct: 509 GETEKALRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTIS 568

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK----LVHEFWAADQSHPQADAIY 703
           N YA  G W+ V KMR  ++ +GLKK PGCSWI + +     V  F A D++H + + I 
Sbjct: 569 NAYAGEGSWDEVVKMREMMKAKGLKKQPGCSWIRVKREEEEXVQVFVANDKTHLRNNEIR 628

Query: 704 TILGIL 709
            +L +L
Sbjct: 629 RMLALL 634



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 190/369 (51%), Gaps = 6/369 (1%)

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            GR VH     S     + V ++L  MY K   L+DA+ +FD++ +++ V WN ++  Y 
Sbjct: 2   FGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 61

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           Q+G  +E++ L+  M   G      T    +S+ + M  +E GK  HA  + NG +    
Sbjct: 62  QNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASANMGGVEEGKXSHALAVVNGLELDNI 121

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           +  S+++ YC+   ++ A  +FD +  K VV+W+ +I GYV      +A+R+   M+LE 
Sbjct: 122 LGTSILNFYCKVGLIDYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCQLMRLEK 181

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           ++ D VT+  ++         +  K +  Y ++    S   + +A    YAKCG I  A 
Sbjct: 182 LKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASAAVDMYAKCGSIVDAK 241

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++FD      KD+I WN++++AYA+ G   +  +L+ +M+   V P++IT+  ++ + + 
Sbjct: 242 KVFDSTV--QKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLR 299

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDAR 607
            G V+E + +F +M+ S G  P+   + +M+N L   G  +EA   ++ M     +P+  
Sbjct: 300 NGQVDEAKEMFLQMQSS-GIVPTIVSWTTMMNGLVXNGCSEEAIHYLRKMQESGMRPNVF 358

Query: 608 VWGPLLSAC 616
                LSAC
Sbjct: 359 SITVALSAC 367


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 283/472 (59%), Gaps = 8/472 (1%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDF-CKDLSVNTALLSMYSKLASLEDAKML 290
           D+ T   L++  +   +++  R+VH     + +  K   +NT L++MY K   L++A+ L
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINT-LINMYVKFGLLDEARNL 73

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           FD+M D++ V W  MISAY  S    ++L+ L+ M+R G R +++T  + + +   + N+
Sbjct: 74  FDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL 133

Query: 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410
              +Q+H ++L+ G +  V V ++LID Y +  + + A  +F+ + T  +V W+S+I G+
Sbjct: 134 ---RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGF 190

Query: 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
             +    E L L+  MK      D  T+ ++L AC  +  LE  + +H + +K   + + 
Sbjct: 191 AQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLI- 249

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
            +N A+   Y KCG +E A  LF    +  KD+I+W++MI+  A++G  +   KL+  MK
Sbjct: 250 -LNNALLDMYCKCGSLEDANLLF-TRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMK 307

Query: 531 QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590
               +P+ IT LG+L AC +AGLV +G   F+ MKE +G +P +EHY  +++LLGRAG +
Sbjct: 308 SKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKL 367

Query: 591 DEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650
           DEA +L+ +M  +PDA  W  LL AC++H   +LA   A++++ ++P +AG Y+LLSNIY
Sbjct: 368 DEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIY 427

Query: 651 AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           A + KW  VA++R  +R RG+KK PGCSWIE+ K VH F   D SHP+ + I
Sbjct: 428 ANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEI 479



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 152/303 (50%), Gaps = 12/303 (3%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           Q  + +H  ++  +G      L + LI+ Y   GLL  ++ +F+ +   N + + T++  
Sbjct: 33  QQARLVH-EHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISA 91

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S      K L     M  + + P   TY  V+R+C  LL+     ++H  ++K+G +S 
Sbjct: 92  YSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESD 148

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V  AL++ Y K  G   +   +           WNS+I    QN   +++  L+K  R
Sbjct: 149 VFVRSALIDTYSKL-GEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYK--R 205

Query: 226 MEGAEF--DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M+ A+F  D  TL ++LR+   L  LELGR VH   +  D  +DL +N ALL MY K  S
Sbjct: 206 MKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGS 263

Query: 284 LEDAKMLFDK-MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           LEDA +LF + M++KD + W+ MI+   Q+GF  ++L+L   M   G + +  T +  + 
Sbjct: 264 LEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLF 323

Query: 343 SIS 345
           + S
Sbjct: 324 ACS 326



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 161/328 (49%), Gaps = 10/328 (3%)

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M R+   AD  T    +        ++  + +H +V  NG + +  + N+LI+MY +   
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           L+ AR +FD +  + VVSW++MI  Y   + + +AL     M  EGV  +  T  ++L A
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C     L +++ LHG  +K+GL S   V +A+  +Y+K G    A  +F+E  + + D++
Sbjct: 127 C---DGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNE--MITGDLV 181

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
            WNS+I  +A++ D  +   LY +MK++D   D  T   +L AC    L+E GR +   +
Sbjct: 182 VWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHV 241

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
            +   Y+       +++++  + G +++A  L   M  + D   W  +++    +  +  
Sbjct: 242 LK---YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSAD 298

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAA 652
           A    E + S  P+   NY+ +  +  A
Sbjct: 299 ALKLFEAMKSKGPK--PNYITILGVLFA 324



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 121/217 (55%), Gaps = 9/217 (4%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
            RP+M  T+S S+L  C+   +L+Q+H   I+  GL  ++ + S LID+Y+ LG    + 
Sbjct: 113 VRPNMY-TYS-SVLRACDGLLNLRQLHGS-ILKVGLESDVFVRSALIDTYSKLGEQHDAL 169

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            VFN + + + +++ +I+   ++  + ++TL +YK+M        + T   V+R+C+ L 
Sbjct: 170 NVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLA 229

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNS 203
               G ++H  V+K  +D    + +AL++ Y KC G  E+   +  R    KD+ S W++
Sbjct: 230 LLELGRQVHVHVLK--YDQDLILNNALLDMYCKC-GSLEDANLLFTRMMTEKDVIS-WST 285

Query: 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           +I+   QNG S  + +LF+ M+ +G + +  T++ +L
Sbjct: 286 MIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVL 322


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 211/660 (31%), Positives = 338/660 (51%), Gaps = 9/660 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   I       ++ + ++L+D Y     +   ++VF ++   N + + ++L    +
Sbjct: 123 KQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQ 182

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G     + ++ +M  + ++P   T+  V+   +       G ++HAQ VK G  S   V
Sbjct: 183 DGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFV 242

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++L+  Y KC    E        + +D+ S WN+L++  V NG   ++ +LF   R   
Sbjct: 243 CNSLMNMYAKCGLVEEARVVFCGMETRDMVS-WNTLMAGLVLNGHDLEALQLFHDSRSSI 301

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T   +++    +K L L R +H   +   F    +V TAL+  YSK   L +A 
Sbjct: 302 TMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNAL 361

Query: 289 MLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
            +F  MS    VV W  MI+   Q+G    +  L   M   G   + FT     S+I T 
Sbjct: 362 DIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFT----YSTILTA 417

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
                  Q+HA V++   +    V  +L+  Y +  +   A  IF  +  K VVSWS+M+
Sbjct: 418 SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAML 477

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-LEHVKYLHGYSMKLGL 466
             Y     S  A  +F +M + G++ +  TI +++ AC +  A ++  +  H  S+K   
Sbjct: 478 TCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRC 537

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
           +    V++A+   YA+ G IE A  +F  E+   +D+++WNSM+S YA+HG   +   ++
Sbjct: 538 HDALCVSSALVSMYARKGSIESAQCIF--ERQTDRDLVSWNSMLSGYAQHGYSQKALDVF 595

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            QM+   +  D +TFL ++  C +AGLVEEG+  F  M   YG  P+ EHYA MV+L  R
Sbjct: 596 RQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSR 655

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
           AG +DEA  L++ M F     VW  LL ACK+H   EL +L AEKL+S+EP ++  YVLL
Sbjct: 656 AGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLL 715

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SNIY+AAGKW    ++R  +  + +KK  GCSWI+I   VH F A+D+SHP ++ IY  L
Sbjct: 716 SNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKL 775



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/497 (26%), Positives = 243/497 (48%), Gaps = 22/497 (4%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFD-DVGDALVEFYIKCDGGFENEKGMIQRKFK 195
           V++ C  + D + G+++H   ++ G D  D  VG +LV+ Y+K     +  K      F+
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRK-----VFE 163

Query: 196 DLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
            +  R    W SL++  +Q+G      ELF  MR EG   +S T  ++L        ++L
Sbjct: 164 AMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDL 223

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           GR VH  +V    C  + V  +L++MY+K   +E+A+++F  M  +D V WN +++    
Sbjct: 224 GRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVL 283

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G   E+L+L      S       T    +   + +K +   +Q+H++VL+ G     +V
Sbjct: 284 NGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV 343

Query: 372 HNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
             +L+D Y +   L  A  IF  +  ++ VVSW++MI G + +     A  LFS M+ +G
Sbjct: 344 MTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDG 403

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V  +  T   IL A  ++ +L     +H   +K      S V TA+  SY+K    E A 
Sbjct: 404 VAPNDFTYSTILTA--SVASLP--PQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEAL 459

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
            +F  + ID KD+++W++M++ YA+ GD      ++ +M    ++P+  T   ++ AC +
Sbjct: 460 SIF--KMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACAS 517

Query: 551 --AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
             AG V+ GR  F  +   +    +    +++V++  R G ++ A+ + +    + D   
Sbjct: 518 PTAG-VDLGR-QFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDR-DLVS 574

Query: 609 WGPLLSACKMHSETELA 625
           W  +LS    H  ++ A
Sbjct: 575 WNSMLSGYAQHGYSQKA 591



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 180/343 (52%), Gaps = 5/343 (1%)

Query: 210 QNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH--CVAVVSDFCK 266
           + G   ++ + F  + R  G     G L+ +L+    +    LG+ +H  C+    D   
Sbjct: 79  RRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDR-G 137

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+ V T+L+ MY K  S+ D + +F+ M  ++ V W  +++ Y Q G   + +EL   M 
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
             G   +  T  + +S +++   ++ G+++HA  ++ G    V V NSL++MY +C  + 
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            AR +F  ++T+ +VSW++++ G V +   LEAL+LF + +     +   T   ++  C 
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           NI  L   + LH   +K G +S  +V TA+  +Y+K G +  A ++F      S+++++W
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMS-GSQNVVSW 376

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
            +MI+   ++GD      L+++M++  V P+  T+  +LTA V
Sbjct: 377 TAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASV 419


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 285/497 (57%), Gaps = 34/497 (6%)

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
            +KS    + +H   +V    +   + T ++ +  KL  ++ A  LF+++S+ +  ++N 
Sbjct: 19  RVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNS 78

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFR-ADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
           +I AY  +    + + +   ++R      D FT      S +++ +   GKQ+H ++ + 
Sbjct: 79  IIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKF 138

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--------------------------- 396
           G  + V   N+LIDMY + +DL  A K+FD +                            
Sbjct: 139 GPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLF 198

Query: 397 ----TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
                KT+VSW++MI GY      +EA+  F EM+L G+E D +++I++LP+C ++G+LE
Sbjct: 199 HLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLE 258

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             K++H Y+ + GL   + V  A+   Y+KCG +  A +LF++ K   KD+I+W++MIS 
Sbjct: 259 LGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTK--GKDVISWSTMISG 316

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           YA HG+  + F+ + +M+++ V+P+ ITFLGLL+AC + GL ++G   F  M++ Y  EP
Sbjct: 317 YAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEP 376

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             EHY  ++++L RAG ++ A E+ K MP KPD+++WG LLS+C+     ++A +  + L
Sbjct: 377 KIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHL 436

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
           + +EP++ GNYVLL+NIYA  GKW  V+++R  +R   +KKTPGCS IE+  +V EF A 
Sbjct: 437 VEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAG 496

Query: 693 DQSHPQADAIYTILGIL 709
           D S P    I  +L + 
Sbjct: 497 DNSKPFWTEISLVLQLF 513



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 213/449 (47%), Gaps = 49/449 (10%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IHA  II+HGL Q+  + + ++D    LG +  + ++FN +++PN  LY +I++  + 
Sbjct: 27  KKIHA-CIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTH 85

Query: 109 FGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
              Y   + +YKQ+  +++ +P   T+PF+ +SC+ L     G+++H  + K G      
Sbjct: 86  NSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVV 145

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM--- 224
             +AL++ Y+K D   +  K   +   +D+ S WNSL+S   + G+ +K+  LF LM   
Sbjct: 146 TENALIDMYMKFDDLVDAHKVFDEMSERDVIS-WNSLLSGYARLGQMKKAKGLFHLMIDK 204

Query: 225 ----------------------------RMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
                                       ++ G E D  +LI++L S   L SLELG+ +H
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIH 264

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
             A      K   V  AL+ MYSK   L  A  LF++   KD + W+ MIS Y   G   
Sbjct: 265 MYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAH 324

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV----H 372
            + E  + M R+  + +  T +  +S+ S +   + G + + +++R   DYQ+      +
Sbjct: 325 RAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLK-YFDMMRQ--DYQIEPKIEHY 381

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMIKGYVTH---DQSLEALRLFSEMKL 428
             LID+      L  A +I  ++  K     W S++    T    D +L A+    E++ 
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEP 441

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYL 457
           + +  ++V + NI     ++G  E V  L
Sbjct: 442 DDMG-NYVLLANIY---ADLGKWEDVSRL 466


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 261/451 (57%), Gaps = 3/451 (0%)

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           +DL     L+S Y+K+  L++AK LFDKM ++D   W  MIS Y +   P E+LEL   M
Sbjct: 134 RDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMM 193

Query: 326 VRS-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
            RS   +++ FT  +A+++ + +  +  GK++H  ++R G D    V ++L DMY +C  
Sbjct: 194 KRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGS 253

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  AR IFD +  + +V+W++MI  Y    +  E   LF+++   G+  +  T   +L A
Sbjct: 254 IEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNA 313

Query: 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII 504
           C N  + E  K +HGY  ++G +  S   +A+   Y+KCG +  A  +F E      D+ 
Sbjct: 314 CANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKE--TPQPDLF 371

Query: 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564
           +W S+I+ YA++G   +  + +  + +S  +PD ITF+G+L+AC +AGLV++G   F  +
Sbjct: 372 SWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSI 431

Query: 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETEL 624
           KE YG   + +HYA +++LL R+G  DEA  ++  M  KPD  +W  LL  C++H   +L
Sbjct: 432 KEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKL 491

Query: 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGK 684
           A+  AE L  +EPEN   YV L+NIYA AG W+ VAK+R  + DRG+ K PG SWI I +
Sbjct: 492 AQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKR 551

Query: 685 LVHEFWAADQSHPQADAIYTILGILELEIME 715
            VH F   D SHP++  I   LG L   + E
Sbjct: 552 DVHVFLVGDDSHPKSKEINEFLGKLSKRMKE 582



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 223/481 (46%), Gaps = 40/481 (8%)

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           Q+  Q   P+   Y  +I+SC        G+K+H  +   GF     + + L+E Y KCD
Sbjct: 60  QILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCD 119

Query: 181 GGFENEK-----------------------GMIQRK---FKDLKSR----WNSLISLAVQ 210
              +++K                       G++Q     F  +  R    W ++IS  V+
Sbjct: 120 SLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVR 179

Query: 211 NGKSEKSFELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + +  ++ ELF++M R + ++ +  T+ + L +   +  L +G+ +H   + +    D  
Sbjct: 180 HDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEV 239

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V +AL  MY K  S+E+A+ +FDKM D+D V W  MI  Y+Q G  KE  +L   ++RSG
Sbjct: 240 VWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSG 299

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            R + FT    +++ +   + E GK++H  + R G D      ++L+ MY +C ++  A 
Sbjct: 300 IRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAE 359

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           ++F       + SW+S+I GY  + Q  EA+R F  +   G + D +T + +L AC + G
Sbjct: 360 RVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAG 419

Query: 450 ALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            ++  + Y H    + GL   +     I    A+ G  + A  +  +  +   D   W S
Sbjct: 420 LVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSM-KPDKFLWAS 478

Query: 509 MISAYAKHGDWSQCFKLYTQMKQS--DVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMK 565
           ++     HG+     KL  +  ++  ++ P+   T++ L      AG+  E   I K M 
Sbjct: 479 LLGGCRIHGN----LKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMD 534

Query: 566 E 566
           +
Sbjct: 535 D 535



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 162/380 (42%), Gaps = 14/380 (3%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           LI  YA +GLL  ++ +F+ +   ++  +  ++    +     + L +++ M        
Sbjct: 142 LISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSD---N 198

Query: 131 EDTYPFVIRSCSCLLDFIS----GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
             +  F + S       +     G++IH  +++ G DS + V  AL + Y KC G  E  
Sbjct: 199 SKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKC-GSIEEA 257

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           + +  +        W ++I    Q+G+ ++ F+LF  +   G   +  T   +L +    
Sbjct: 258 RHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQ 317

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            S ELG+ VH       F       +AL+ MYSK  ++  A+ +F +    D   W  +I
Sbjct: 318 TSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLI 377

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG-KQMHANVLRNGS 365
           + Y Q+G P E++     +V+SG + D  T +  +S+ +    ++ G    H+   + G 
Sbjct: 378 AGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGL 437

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQ---SLEALR 421
            +    +  +ID+       + A  I   +  K     W+S++ G   H     +  A  
Sbjct: 438 THTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAE 497

Query: 422 LFSEMKLEGVEVDFVTIINI 441
              E++ E     +VT+ NI
Sbjct: 498 ALFEIEPEN-PATYVTLANI 516



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 117/256 (45%), Gaps = 4/256 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  YI+  GL  + ++ S L D Y   G +  ++ +F+ +   + + +  ++    +
Sbjct: 223 KEIHG-YIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQ 281

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  ++   ++  +    + P E T+  V+ +C+       G+K+H  + ++GFD F   
Sbjct: 282 DGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFA 341

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             ALV  Y KC      E+   +    DL S W SLI+   QNG+ +++   F+L+   G
Sbjct: 342 ASALVHMYSKCGNMVSAERVFKETPQPDLFS-WTSLIAGYAQNGQPDEAIRYFELLVKSG 400

Query: 229 AEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
            + D  T + +L +      ++ G    H +               ++ + ++    ++A
Sbjct: 401 TQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEA 460

Query: 288 KMLFDKMSDK-DRVVW 302
           + +  KMS K D+ +W
Sbjct: 461 ENIISKMSMKPDKFLW 476


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 290/510 (56%), Gaps = 3/510 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I    Q    +    ++  M++     +  T + +L++        +G+ +H    
Sbjct: 68  WNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTF 127

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  ++ V  +L+SMY+K   +  A+++FDK+ D+  V W  +IS Y Q+G P E+L 
Sbjct: 128 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 187

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M +   + D    ++ +++ + ++++  GK +H  V + G +++  +  SL  MY 
Sbjct: 188 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 247

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +   +  AR  F+ ++   ++ W++MI GY  +    EA++LF EM  + + VD +T+ +
Sbjct: 248 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 307

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
            + A   +G+LE  ++L GY  K      + VNT +   YAKCG I +A  +FD  ++  
Sbjct: 308 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD--RVAD 365

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           KD++ W+ MI  Y  HG   +   LY +MKQ+ V P+  TF+GLLTAC N+GLV+EG  +
Sbjct: 366 KDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWEL 425

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  M + +G EP  +HY+ +V+LLGRAG++++A + +  MP KP   VWG LLSACK+H 
Sbjct: 426 FHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHR 484

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           +  L E+ AE+L  ++P N G+YV LSN+YA+A  W  VA +R  +  +GL K  G S I
Sbjct: 485 KVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 544

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILE 710
           EI   +  F   D+SHP++  I+  L  LE
Sbjct: 545 EINGNLETFQVGDRSHPKSKEIFEELDRLE 574



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 209/407 (51%), Gaps = 2/407 (0%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +HL Q++ + +I+ GLH+   L    I++  + G ++ + + F  ++ P+ LL+  I+K 
Sbjct: 16  KHLDQVYVQ-LIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            ++    +  + +Y  M +  ++P   T+ +V+++C        G++IH Q  K GF S 
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V ++LV  Y K  G     + +  +        W S+IS  VQNG   ++  +FK MR
Sbjct: 135 VFVQNSLVSMYAKF-GQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 193

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
               + D   L++++ +   ++ L  G+ +H +        +  +  +L +MY+K   +E
Sbjct: 194 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 253

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            A+  F++M   + ++WN MIS Y  +G+ +E+++L   M+    R D  T  +AV + +
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            + ++E  + +   + ++       V+  LIDMY +C  +  AR +FD V  K VV WS 
Sbjct: 314 QVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSV 373

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           MI GY  H    EA+ L++EMK  GV  +  T I +L AC N G ++
Sbjct: 374 MIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 420



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 167/339 (49%), Gaps = 4/339 (1%)

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346
           A   F ++S+ D ++WN +I  Y Q       + + M M  S    + FT +  + +   
Sbjct: 53  AHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGG 112

Query: 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM 406
                 GKQ+H    + G    V V NSL+ MY +   ++ AR +FD +  +TVVSW+S+
Sbjct: 113 TSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSI 172

Query: 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466
           I GYV +   +EAL +F EM+   V+ D++ +++++ A  N+  L   K +HG   KLGL
Sbjct: 173 ISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGL 232

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
                +  ++   YAK G +E+A   F+  +++  ++I WN+MIS YA +G   +  KL+
Sbjct: 233 EFEPDIVISLTTMYAKRGLVEVARFFFN--RMEKPNLILWNAMISGYANNGYGEEAIKLF 290

Query: 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            +M   ++R D IT    + A    G +E  R +   + +S  Y         ++++  +
Sbjct: 291 REMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKS-EYRDDTFVNTGLIDMYAK 349

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            G +  AR  V D     D  +W  ++    +H   + A
Sbjct: 350 CGSIYLAR-CVFDRVADKDVVLWSVMIMGYGLHGHGQEA 387



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 181/368 (49%), Gaps = 3/368 (0%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +QIH +    +G   N+ + ++L+  YA  G +S ++ VF+ +     + + +I+    +
Sbjct: 120 KQIHGQ-TFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 178

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G+  + L V+K+M   ++ P       V+ + + + D   G+ IH  V KLG +   D+
Sbjct: 179 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDI 238

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
             +L   Y K  G  E  +    R  K     WN++IS    NG  E++ +LF+ M  + 
Sbjct: 239 VISLTTMYAK-RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 297

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              DS T+ + + ++ ++ SLEL R +      S++  D  VNT L+ MY+K  S+  A+
Sbjct: 298 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLAR 357

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD+++DKD V+W++MI  Y   G  +E++ L   M ++G   +  T I  +++     
Sbjct: 358 CVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSG 417

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI 407
            ++ G ++   +  +G +     ++ ++D+      LN A     S+  K  VS W +++
Sbjct: 418 LVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALL 477

Query: 408 KGYVTHDQ 415
                H +
Sbjct: 478 SACKIHRK 485



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
           D+N A K F  V    ++ W+++IKGY   +     +R++ +M++  V  +  T + +L 
Sbjct: 49  DVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLK 108

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC         K +HG + K G  S   V  ++   YAK G I  A  +FD  K+  + +
Sbjct: 109 ACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD--KLHDRTV 166

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W S+IS Y ++GD  +   ++ +M+Q +V+PD I  + ++TA  N   + +G+ I   
Sbjct: 167 VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSI-HG 225

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +    G E   +   S+  +  + G ++ AR     M  KP+  +W  ++S 
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISG 276


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 176/443 (39%), Positives = 255/443 (57%), Gaps = 19/443 (4%)

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFRADLFTA 337
           S   SL+ A+ +FD++   +   WN +I AY  S  P +SL + + M+ +S    D FT 
Sbjct: 80  SPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTF 139

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
              + + S ++ +  GK  H  V++   GSD  V + NSLI  Y +C +L    ++F + 
Sbjct: 140 PFLIKAASELEELFTGKAFHGMVIKVLLGSD--VFILNSLIHFYAKCGELGLGYRVFVNX 197

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
             + VVSW+SMI  +V      EAL LF EM+ + V+ + +T++ +L AC      E  +
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           ++H Y  +  +    +++ A+   Y KCG +E A  LFD  K+  KDI++W +M+  YAK
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFD--KMPEKDIVSWTTMLVGYAK 315

Query: 516 ------------HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
                       HG       L+++M++  V+P+ +TF  +L AC + GLVEEGR  F +
Sbjct: 316 IGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQ 375

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M+  YG  P  +HYA MV++LGRAG ++EA EL++ MP  P A VWG LL AC +H    
Sbjct: 376 MELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVV 435

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           LAE    +LI +EP N G YVLLSNIYA AGKW+ V+ +R  +RD GLKK PGCS IE+ 
Sbjct: 436 LAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVD 495

Query: 684 KLVHEFWAADQSHPQADAIYTIL 706
            +VHEF   D SHP A  IY  L
Sbjct: 496 GIVHEFLVGDNSHPSAKKIYAKL 518



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 161/292 (55%), Gaps = 18/292 (6%)

Query: 32  ATH-SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL--SQQVF 88
           A H + SL++ C   + L+QIHA+ ++  GL  +   +S LI + A     SL  +QQVF
Sbjct: 34  ANHPTLSLIDQCSETKQLKQIHAQ-MLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVF 92

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM-YPAEDTYPFVIRSCSCLLDF 147
           + I  PN   + T+++  +      ++LL++ +M  QS  +P + T+PF+I++ S L + 
Sbjct: 93  DQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEEL 152

Query: 148 ISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
            +G+  H  V+K  LG D F  + ++L+ FY KC      E G+  R F +   R    W
Sbjct: 153 FTGKAFHGMVIKVLLGSDVF--ILNSLIHFYAKC-----GELGLGYRVFVNXPRRDVVSW 205

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           NS+I+  VQ G  E++ ELF+ M  +  + +  T++ +L +  +    E GR VH     
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
           +   + L+++ A+L MY+K  S+EDAK LFDKM +KD V W  M+  Y + G
Sbjct: 266 NRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 185/386 (47%), Gaps = 26/386 (6%)

Query: 151 EKIHAQVVKLG--FDSFDD---VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
           ++IHAQ+++ G  FD F     +  A +  +   D     ++   Q    +L + WN+LI
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYA---QQVFDQIPHPNLYT-WNTLI 107

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
                +    +S  +F  M  +  +F D  T   L+++  EL+ L  G+  H + +    
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
             D+ +  +L+  Y+K   L     +F     +D V WN MI+A+ Q G P+E+LEL   
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M     + +  T +  +S+ +   + E+G+ +H+ + RN     +++ N+++DMY +C  
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGS 287

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVT------------HDQSLEALRLFSEMKLEGVE 432
           +  A+++FD +  K +VSW++M+ GY              H    +A+ LFS+M+ + V+
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVK 347

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN--TAIFISYAKCGCIEMAG 490
            + VT  NIL AC ++G +E  +      M+L    L  V     +     + G +E A 
Sbjct: 348 PNAVTFTNILCACSHVGLVEEGRTFFN-QMELVYGVLPGVKHYACMVDILGRAGLLEEAV 406

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKH 516
           EL ++  +     + W +++ A   H
Sbjct: 407 ELIEKMPMAPAASV-WGALLGACTIH 431



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 119/271 (43%), Gaps = 21/271 (7%)

Query: 58  LHGLHQNLILSSN------LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
            HG+   ++L S+      LI  YA  G L L  +VF +    + + + +++    + G 
Sbjct: 158 FHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGC 217

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
            E+ L ++++M  Q++ P   T   V+ +C+   DF  G  +H+ + +        + +A
Sbjct: 218 PEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNA 277

Query: 172 LVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLA-----------VQNGKSEKSFE 219
           +++ Y KC G  E+ K +  +   KD+ S    L+  A             +G  + +  
Sbjct: 278 MLDMYTKC-GSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIA 336

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMY 278
           LF  M+ +  + ++ T  N+L +   +  +E GR   + + +V      +     ++ + 
Sbjct: 337 LFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDIL 396

Query: 279 SKLASLEDAKMLFDKMSDKDRV-VWNIMISA 308
            +   LE+A  L +KM       VW  ++ A
Sbjct: 397 GRAGLLEEAVELIEKMPMAPAASVWGALLGA 427


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  328 bits (842), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 211/724 (29%), Positives = 362/724 (50%), Gaps = 85/724 (11%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS-----ITSPNSLLYGTI--- 102
           + AR +    L +N +  + +I  Y   G +++++++F++     ++S NS+L G     
Sbjct: 113 LEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSL 172

Query: 103 ----LKNL----------------SKFGEYE---KTLLVYKQMALQSMYPAEDTYPFVIR 139
                +NL                S +G  E   K   ++ +M  + + P +  +   + 
Sbjct: 173 QMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALS 232

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK----CDGGFENEKGMIQRKFK 195
           +   L +    E +    +K GF+    +G A++  Y +     D   +  + MI+R   
Sbjct: 233 AVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN-- 290

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
             +  W+++I+     G+ + +  +++   ++     +  +  L          + GRI 
Sbjct: 291 --EYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLA---------QCGRID 339

Query: 256 HCVAVVSDFCKDLSVN-TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
               +     + + V+  AL++ Y +   + +AK LFDKM  ++ + W  MI+ Y Q+G 
Sbjct: 340 DARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            +E+L LL  + RSG    L +  +   + S +  +E G Q+H+  ++ G  +     N+
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNA 459

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI MY +C ++  AR++F  + TK +VSW+S +   V +D   EA   F  M L   +V 
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-LSRDDVS 518

Query: 435 FVTIIN--------------------------------ILPACVNIGALEHVKYLHGYSM 462
           + TII+                                +L  C ++GA +  + +H  ++
Sbjct: 519 WTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAI 578

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           KLG++S   V  A+   Y KCGC + +  +FD   ++ +DI TWN++I+ YA+HG   + 
Sbjct: 579 KLGMDSELIVANALISMYFKCGCAD-SRRIFD--LMEERDIFTWNTIITGYAQHGLGREA 635

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            K+Y  M+ + V P+ +TF+GLL AC +AGLV+EG   FK M + YG  P  EHYA MV+
Sbjct: 636 IKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVD 695

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGR G +  A + + DMP +PD  +W  LL ACK+H   E+ +  AEKL  +EP NAGN
Sbjct: 696 LLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGN 755

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           YV+LSNIY++ G W  VA++R  ++ +G+ K PGCSW +I   +H F   D+ H Q + I
Sbjct: 756 YVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEI 815

Query: 703 YTIL 706
              L
Sbjct: 816 VATL 819



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 171/383 (44%), Gaps = 36/383 (9%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           ++S  +A +    +L  + +A+ +FD M  +D + WN MISAY  +G P  + +L   + 
Sbjct: 33  EVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS 92

Query: 327 RSGFR--ADLFTAIAAVSSISTMKNIEWG---------KQMHANVLRNGS---------- 365
               R  A L +    +  +   + +  G           M +  ++NG           
Sbjct: 93  GGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 366 --DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                VS  NS++  YC    +  AR +F+ +  + +VSW+ MI GY   +   +A  +F
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIF 212

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK- 482
            +M  EG+  D     + L A   +G L+ ++ L   ++K G      + TAI   Y++ 
Sbjct: 213 CKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRD 272

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              ++ A + F  E +  ++  TW++MI+A +  G       +Y    + D    +    
Sbjct: 273 TSVLDTAIKFF--ESMIERNEYTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRT 326

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            L+T     G +++ RI+F+++      EP    + +++    + G ++EA+EL   MPF
Sbjct: 327 ALITGLAQCGRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 603 KPDARVWGPLLSACKMHSETELA 625
           + +   W  +++    +  +E A
Sbjct: 382 R-NTISWAGMIAGYAQNGRSEEA 403



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 103/502 (20%), Positives = 220/502 (43%), Gaps = 44/502 (8%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI--------------NLLRSTVEL 246
           WNS+IS    NG  + + +L+    + G    +G ++               +    +E 
Sbjct: 68  WNSMISAYCHNGMPDAARDLYDA--ISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLER 125

Query: 247 KSLELGRIVHCVAVVSDFC-----------KDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
            ++    ++ C     D             +D+S   ++L+ Y     + DA+ LF+KM 
Sbjct: 126 NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMP 185

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           +++ V W +MIS Y +     ++ ++   M R G   D     +A+S++  + N++  + 
Sbjct: 186 ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLES 245

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYC-ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           +    L+ G +  V +  +++++Y  +   L+ A K F+S+  +   +WS+MI       
Sbjct: 246 LRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGG 305

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           +   A+ ++    ++ +      +I  L  C   G ++  + L     ++    + S N 
Sbjct: 306 RIDAAIAVYERDPVKSIACR-TALITGLAQC---GRIDDARILF---EQIPEPIVVSWN- 357

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y + G +  A ELFD  K+  ++ I+W  MI+ YA++G   +   L  ++ +S +
Sbjct: 358 ALITGYMQNGMVNEAKELFD--KMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            P L +   +  AC N   +E G  +   +    G + +     +++ + G+  +M+ AR
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQV-HSLAVKVGCQFNSFACNALITMYGKCRNMEYAR 474

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           ++   M  K D   W   L+A   +   + A  T + ++S +     ++  + + YA A 
Sbjct: 475 QVFSRMVTK-DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDV---SWTTIISAYAHAE 530

Query: 655 KWN-GVAKMRTFLRDRGLKKTP 675
           + N  +   +T   +  L  +P
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSP 552



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 122/282 (43%), Gaps = 35/282 (12%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C N ++ +Q+ +R +      ++++  ++ + +     LL  ++  F+++ S + + + T
Sbjct: 467 CRNMEYARQVFSRMVT-----KDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTT 521

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           I+   +   +  + +  +K M  +   P       ++  C  L     G++IH   +KLG
Sbjct: 522 IISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLG 581

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKS 217
            DS   V +AL+  Y KC  G  + +    R F  ++ R    WN++I+   Q+G   ++
Sbjct: 582 MDSELIVANALISMYFKC--GCADSR----RIFDLMEERDIFTWNTIITGYAQHGLGREA 635

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            ++++ M   G   +  T + LL +      ++ G           F K +S +  L  +
Sbjct: 636 IKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG---------WKFFKSMSQDYGLTPL 686

Query: 278 YSKLASLED-----------AKMLFDKMSDKDRVVWNIMISA 308
               A + D            + ++D   + D V+W+ ++ A
Sbjct: 687 PEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 281/512 (54%), Gaps = 33/512 (6%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+  ++     L    LGR VHC  +   F       + L+ MY+K+  + DA+ +FD+M
Sbjct: 147 TMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEM 206

Query: 295 S-------------------------------DKDRVVWNIMISAYYQSGFPKESLELLM 323
                                           ++D + W  M++   Q+G   E+L++  
Sbjct: 207 EGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFR 266

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M   G   D +T  + +++   +  +E GKQ+HA + R   +  V V ++L+DMY +C 
Sbjct: 267 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCR 326

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            +  A  +F  +  K ++SW++MI GY  +    EA+R+FSEM+ +G++ D  T+ +++ 
Sbjct: 327 SVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVIS 386

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           +C N+ +LE     H  ++  GL    +V+ A+   Y KCG IE A  LFDE  +   D 
Sbjct: 387 SCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDE--MSFHDQ 444

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++W +++  YA+ G   +   L+ +M    V+PD +TF+G+L+AC  +GLV++GR  F  
Sbjct: 445 VSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHS 504

Query: 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           M++ +   P  +HY  M++L  R+G + +A E +K MP  PDA  W  LLSAC++  + E
Sbjct: 505 MQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDME 564

Query: 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIG 683
           + +  AE L+ ++P+N  +YVLL +++A+ G+WN VAK+R  +RDR +KK PGCSWI+  
Sbjct: 565 IGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYK 624

Query: 684 KLVHEFWAADQSHPQADAIYTILGILELEIME 715
             VH F A DQSHP +  IY  L  L  +++E
Sbjct: 625 NKVHIFSADDQSHPFSRTIYEKLQWLNSKMVE 656



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 253/527 (48%), Gaps = 35/527 (6%)

Query: 25  QTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           +T PH + T+  + L        L   HAR +      +NL+  ++L+ + A  GL+   
Sbjct: 38  RTLPHPSPTYLLNTLLTAYASSGLLP-HARRVFDAMPGRNLVTGNSLLSALARAGLVRDM 96

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ--SMYPAEDTYPFVIRSCS 142
           +++F S+   +++ Y  +L   S+ G + +    Y  +      + P+  T   V+   S
Sbjct: 97  ERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVAS 156

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK--------------- 187
            L D   G ++H Q+++LGF ++   G  LV+ Y K     +  +               
Sbjct: 157 ALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNT 216

Query: 188 ---GMIQRK--------FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
              G+++ K        F+ ++ R    W ++++   QNG   ++ ++F+ MR EG   D
Sbjct: 217 MITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGID 276

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
             T  ++L +   L +LE G+ +H     + +  ++ V +AL+ MYSK  S+  A+ +F 
Sbjct: 277 QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
           +M  K+ + W  MI  Y Q+G  +E++ +   M R G + D FT  + +SS + + ++E 
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEE 396

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G Q H   L +G    V+V N+L+ +Y +C  +  A ++FD +     VSW++++ GY  
Sbjct: 397 GAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQ 456

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSS 471
             ++ E + LF +M  +GV+ D VT I +L AC   G ++  + Y H       +  L  
Sbjct: 457 FGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDD 516

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             T +   Y++ G ++ A E F ++     D   W +++SA    GD
Sbjct: 517 HYTCMIDLYSRSGWLKQAEE-FIKQMPRCPDAFGWATLLSACRLRGD 562



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 178/381 (46%), Gaps = 37/381 (9%)

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           ++L    +LLS  ++   + D + LF  +  +D V +N +++ + ++G    +    + +
Sbjct: 75  RNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVAL 134

Query: 326 VR--SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           +R  +G R    T    V   S + +   G+Q+H  +LR G        + L+DMY +  
Sbjct: 135 LRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVG 194

Query: 384 DLNCARKIFDSVKTKTVV-------------------------------SWSSMIKGYVT 412
            +  AR++FD ++ K VV                               +W++M+ G   
Sbjct: 195 PIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQ 254

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +    EAL +F  M+ EGV +D  T  +IL AC  + ALE  K +H Y  +        V
Sbjct: 255 NGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFV 314

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   Y+KC  + +A  +F   ++  K+II+W +MI  Y ++G   +  +++++M++ 
Sbjct: 315 GSALVDMYSKCRSVRLAEAVF--RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRD 372

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
            ++PD  T   ++++C N   +EEG   F  +    G  P      ++V L G+ G +++
Sbjct: 373 GIKPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLRPYVTVSNALVTLYGKCGSIED 431

Query: 593 ARELVKDMPFKPDARVWGPLL 613
           A  L  +M F  D   W  L+
Sbjct: 432 AHRLFDEMSFH-DQVSWTALV 451


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 304/558 (54%), Gaps = 7/558 (1%)

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
            GFD    + + L+  Y KC G       +  R  K     W +L+   +QNG   +S  
Sbjct: 3   FGFDLM--LSNDLIVMYGKC-GRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLL 59

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  M + G + +  T    L++   L  L++GR +H + V + F     V  +++ MYS
Sbjct: 60  LFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYS 119

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K   + +A  +F+ M  ++ + WN MI+ Y  +GF +++L L   M   G   D FT  +
Sbjct: 120 KCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTS 179

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQV--SVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + S +  I+ G Q+HA ++  G  Y V  +V  +LID+Y +C  L  AR++F  ++ 
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           K V+SW+++I GY       E++ LF +++   ++VD   + +++    +   ++  K +
Sbjct: 240 KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQM 299

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
           H +++K+      SV  +I   Y KCG I  A  LF E  + ++++I+W  MI+ Y KHG
Sbjct: 300 HAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSE--MPARNVISWTVMITGYGKHG 357

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
              +  +L+ +M+     PD +T+L +L  C ++GLVE+G+  F  +   +G +   EHY
Sbjct: 358 LGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHY 417

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
           A MV+LLGRAG + EA+ LV  MP + +  +W  LLSAC++H + EL +     L+ ++ 
Sbjct: 418 ACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDS 477

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
           EN  NYV++SNIYA AG W    ++R  ++ + LKK  G SW+EI K VH F+  D +HP
Sbjct: 478 ENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHP 537

Query: 698 QADAIYTILGILELEIME 715
             + I+ IL  +E  + E
Sbjct: 538 LTEKIHEILKEMERRMKE 555



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 234/468 (50%), Gaps = 17/468 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G   +L+LS++LI  Y   G L ++  VF+ +   N + +  ++    + G   ++LL++
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +M L  + P + T+   +++C  L     G +IH   VK GFD  + VG+++++ Y KC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 180 DGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
             G  NE   +   F+ +  R    WN++I+     G  EK+  LF+ M+  G   D  T
Sbjct: 122 --GRINEAACM---FEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFT 176

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT----ALLSMYSKLASLEDAKMLF 291
             + L++  +L +++ G  +H   +   F    SVNT    AL+ +Y K   L  A+ +F
Sbjct: 177 FTSTLKACSDLGAIKEGNQIHAFLITGGFL--YSVNTAVAGALIDLYVKCGKLFMARRVF 234

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
             + +K  + W  +I  Y Q G   ES+EL   +  S  + D F   + +   +    ++
Sbjct: 235 SHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQ 294

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GKQMHA  ++  S   +SV NS++DMY +C  +N A ++F  +  + V+SW+ MI GY 
Sbjct: 295 QGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYG 354

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLS 470
            H    EA+RLF EM+L+  E D VT + +L  C + G +E  + Y        G+ +  
Sbjct: 355 KHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARV 414

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                +     + G ++ A  L D   +++ ++  W +++SA   HGD
Sbjct: 415 EHYACMVDLLGRAGRLKEAKNLVDSMPLEA-NVGIWQTLLSACRVHGD 461



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 3/234 (1%)

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G  + + + N LI MY +C  L  A  +FD +  + VVSW++++ G++ +   LE+L LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
           S+M L GV+ +  T    L AC  +  L+  + +H   +K G + ++ V  +I   Y+KC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G I  A  +F  E +  +++I+WN+MI+ Y   G   +   L+ +M++     D  TF  
Sbjct: 122 GRINEAACMF--EVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTS 179

Query: 544 LLTACVNAGLVEEGRIIFKEM-KESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
            L AC + G ++EG  I   +    + Y  +     ++++L  + G +  AR +
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRV 233


>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Brachypodium distachyon]
          Length = 594

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 309/587 (52%), Gaps = 12/587 (2%)

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
           L  ++L++ +  G Y + + +Y  M          T+PF  ++C  L     G  +H + 
Sbjct: 9   LANSLLRSYTGLGHYREAVALYSGMRSFDHL----TFPFAAKACGGLRLSRHGRAVHCRA 64

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKS 217
           +  GF     V +AL+  Y+ C      E      + + + S WN++I+  V+N  +E++
Sbjct: 65  LAAGFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVS-WNAVIAGCVKNDCAERA 123

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            E+F  M  +G E D  T++++L +  + K+L +GR VH +          +V  AL+ M
Sbjct: 124 LEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAAVKNALIDM 183

Query: 278 YSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESLEL--LMCMVRSGFRADL 334
           Y K  +LE A+ +FD    DKD V W +MI AY  +   +E+  L   M M       + 
Sbjct: 184 YGKCRNLEGARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNG 243

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T    +S+ S +      K MHA  +R G +  + V  +L+D Y +C ++       ++
Sbjct: 244 VTMAYLLSACSRLSG-RHAKCMHAMCIRLGLESDIIVETALMDAYAKCHNMKMMELTLEN 302

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
              +T  +W++ I GY  ++Q  +A+ L   M  E    D  T+ +ILPA      +   
Sbjct: 303 GSRRTE-TWNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQA 361

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
             +H Y + LG    + + T +   YAK G ++++  LFD   +  KD++ W ++I+ Y 
Sbjct: 362 TNIHCYLLTLGFLRSTEITTGLINVYAKAGDLDVSWSLFD--GLPEKDVVAWTTVIAGYG 419

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
            HG       LY +M Q  V+P+ +TF  LL AC + G+V+EG  +F++M+  +G  P+ 
Sbjct: 420 MHGQAQTSILLYNRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNA 479

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           +HY+S+V+++GRAG ++EA  L++DMP +P   VWG LL AC +H   +  E+ A+ L  
Sbjct: 480 DHYSSLVDMVGRAGRIEEAYRLIEDMPLEPSTSVWGALLGACVLHKNVKFGEVAAKHLFE 539

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           +EP+N GN+VLL NIYAAA +W+ V  +R  + ++GL K  G S +E
Sbjct: 540 LEPKNTGNHVLLGNIYAAADRWSDVQDVRRRMAEKGLSKESGSSLVE 586



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 196/423 (46%), Gaps = 12/423 (2%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +H + +H R +   G   +  + + LI  Y   G ++ ++ VF ++ +   + +  ++  
Sbjct: 55  RHGRAVHCRALAA-GFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAG 113

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
             K    E+ L V+ +MA         T   V+ +C+   +   G  +H  V + G   +
Sbjct: 114 CVKNDCAERALEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADY 173

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLAVQNGKSEKSFELFKLM 224
             V +AL++ Y KC       K     K+ KD+ S W  +I   V N   E++F L   M
Sbjct: 174 AAVKNALIDMYGKCRNLEGARKVFDDHKYDKDVVS-WTVMIGAYVLNDHVEEAFALGHEM 232

Query: 225 RM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
            M  GA + +G  +  L S     S    + +H + +      D+ V TAL+  Y+K  +
Sbjct: 233 LMTSGAPWPNGVTMAYLLSACSRLSGRHAKCMHAMCIRLGLESDIIVETALMDAYAKCHN 292

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           ++  ++  +  S +    WN  IS Y  +   K+++ELL  M+    R D  T  + + +
Sbjct: 293 MKMMELTLENGSRRTE-TWNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPA 351

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            +   ++     +H  +L  G      +   LI++Y +  DL+ +  +FD +  K VV+W
Sbjct: 352 YAESADVRQATNIHCYLLTLGFLRSTEITTGLINVYAKAGDLDVSWSLFDGLPEKDVVAW 411

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-------EHVKY 456
           +++I GY  H Q+  ++ L++ M   GV+ + VT  ++L AC ++G +       E ++ 
Sbjct: 412 TTVIAGYGMHGQAQTSILLYNRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDMRG 471

Query: 457 LHG 459
           +HG
Sbjct: 472 IHG 474


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 208/688 (30%), Positives = 350/688 (50%), Gaps = 24/688 (3%)

Query: 44  NPQHLQQIHARYIILHG------LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           +P       A+  I+H       L ++L +++ L+D+Y   G +  + +VF+ I  P+ +
Sbjct: 139 DPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLI 198

Query: 98  LYGTILKNLSKFGEY-EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            +   +   +   E  ++ LL+ ++M L+ + P   ++  ++ SC           IHA+
Sbjct: 199 CWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHAR 258

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
           V +LGF     V  ALV  Y +C G  +    + +         WN++I+   Q G    
Sbjct: 259 VEELGFLGDVVVATALVTMYGRC-GSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSA 317

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR--IVHCVAVVSDFCKDLSVNTAL 274
           +F ++  M+ EG   +  T +  L++     S +LG    +H     +    D+ V TAL
Sbjct: 318 AFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTAL 377

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY    +++ A+  FD +  K+ V WN M++AY  +G  +E++EL   M R     + 
Sbjct: 378 VTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNK 437

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFD 393
            + +A    +   +++   + +HA V+ NG   Q  S+ N ++ M+     L  A   FD
Sbjct: 438 VSYLAV---LGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFD 494

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           +   K  VSW++ +      +    A+  F  M+ EG   D  T+++++  C ++G LE 
Sbjct: 495 ATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLEL 554

Query: 454 VKYLHG-YSMKLGLNSLSSVNTAIFISYAKCGC-IEMAGELFDEEKIDSKDIITWNSMIS 511
            + +    S  + +     V +A+    AKCG  ++    LF     D KD++ WN+MI+
Sbjct: 555 GRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIA 614

Query: 512 AYAKHGDWSQCFKLYTQMKQ-SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           AYA+HG   +  KL+  M+Q S VRPD  TF+ +L+ C +AGLVE+G   F   +E  G 
Sbjct: 615 AYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGI 674

Query: 571 EPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
           E    EHYA +V++LGR G++ EA + ++ MP   D+ VW  LL AC  + + E  E  A
Sbjct: 675 EQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAA 734

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK-TPGCSWIEIGKLVHE 688
              I +   ++  YV+LSNIYAAAG+W    ++R  + +R +KK  PG S I +   VHE
Sbjct: 735 RAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRAPGKSSIVVKNRVHE 794

Query: 689 FWAADQSHPQADAIYTILGILELEIMEG 716
           F+A D+SHPQ+D IY      ELE ++G
Sbjct: 795 FFARDRSHPQSDEIYA-----ELERLKG 817



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 219/478 (45%), Gaps = 29/478 (6%)

Query: 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           +T   ++R C    D   G ++H Q+VK G    D +G+ LV+ Y KC    +       
Sbjct: 25  ETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAA--- 81

Query: 192 RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
             F  L+SR    WN+LI  A Q+  +   F+L+  M++E    +    + ++     + 
Sbjct: 82  --FSALRSRGIATWNTLI--AAQSSPA-AVFDLYTRMKLEERAENRPNRLTIIAVLGAIA 136

Query: 248 SLE---------LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD 298
           S +           RIVH     SD  +DL V TALL  Y K   +E A  +F ++   D
Sbjct: 137 SGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPD 196

Query: 299 RVVWNIMISAYYQSG-FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
            + WN  I A   +   P  +L L+  M   G   +  + +A +SS     ++   + +H
Sbjct: 197 LICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIH 256

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A V   G    V V  +L+ MY  C  ++ +  +F+++  +  VSW++MI  +       
Sbjct: 257 ARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRS 316

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGA--LEHVKYLHGYSMKLGLNSLSSVNTA 475
            A  ++  M+ EG   + +T +  L A  +  +  L     LHG+    GL     V TA
Sbjct: 317 AAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTA 376

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   Y   G I+ A   FD   I +K+I++WN+M++AY  +G   +  +L+  MK+  + 
Sbjct: 377 LVTMYGSTGAIDRARAAFD--AIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLA 434

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           P+ +++L +L  C +   V E R I  E+  +  +         +V +  R+G ++EA
Sbjct: 435 PNKVSYLAVLGCCED---VSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEA 489



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 17/392 (4%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           TL  LLR  +    L  GR +H   V     ++  +   L+ MYSK  SL+DA   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAAVSSIST----- 346
             +    WN +I+A  QS  P    +L   M    R+  R +  T IA + +I++     
Sbjct: 86  RSRGIATWNTLIAA--QSS-PAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSS 142

Query: 347 -MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
              +    + +H ++  +  +  + V  +L+D Y +C  +  A ++F  ++   ++ W++
Sbjct: 143 SSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNA 202

Query: 406 MIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
            I     +D+  + AL L   M LEG+  +  + + IL +C +  +L   + +H    +L
Sbjct: 203 AIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEEL 262

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G      V TA+   Y +CG ++ +  +F  E +  ++ ++WN+MI+A+A+ G  S  F 
Sbjct: 263 GFLGDVVVATALVTMYGRCGSVDESIAVF--EAMAVRNHVSWNAMIAAFAQCGHRSAAFA 320

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR-IIFKEMKESYGYEPSQEHYASMVNL 583
           +Y +M+Q   RP+ ITF+  L A  ++   + G            G E       ++V +
Sbjct: 321 IYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTM 380

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            G  G +D AR     +P K +   W  +L+A
Sbjct: 381 YGSTGAIDRARAAFDAIPAK-NIVSWNAMLTA 411



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 124/285 (43%), Gaps = 17/285 (5%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLH-QNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
            ++L  CE+    + IHA  ++ +GL  Q   +++ ++  +A  G L  +   F++    
Sbjct: 441 LAVLGCCEDVSEARSIHAE-VVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVK 499

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           +S+ + T +  LS   +    +  +  M  +   P + T   V+  C+ L     G  I 
Sbjct: 500 DSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQ 559

Query: 155 AQV---VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNSLISLAV 209
            Q+   +++  D    V  A++    KC    +  + +  R   D K    WN++I+   
Sbjct: 560 QQLSAAIEVERDVV--VESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYA 617

Query: 210 QNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC--- 265
           Q+G   K+ +LF++M+   +   DS T +++L        +E G  +HC  +  +     
Sbjct: 618 QHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDG--IHCFFLAREVLGIE 675

Query: 266 -KDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
            + +     L+ +  ++  L +A+    KM    D VVW  ++ A
Sbjct: 676 QQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGA 720


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 180/524 (34%), Positives = 299/524 (57%), Gaps = 12/524 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+LIS  V NG  +     ++ MR  G   D  T   L++   E+  +   + +H +  
Sbjct: 28  YNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKIHGLVR 87

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D+ V ++L+S Y K   +++A+ LFD++ D+D V+WN M++ Y Q G   E+L 
Sbjct: 88  KLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALG 147

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M + G     FT    +S  +   + + G+ +H  +++ G D  VSV N+LIDMY 
Sbjct: 148 VCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYG 207

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  A +IF+++  K + SW+S++            LRLF  M  +GV++D VTI  
Sbjct: 208 KCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITT 267

Query: 441 ILPACVNIGALEHVKYLHGYSMKLG---------LNSLSSVNTAIFISYAKCGCIEMAGE 491
           ILPAC ++ AL H + +HGY +  G         + +L ++N A+   YAKCG +  AG 
Sbjct: 268 ILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTIN-ALMDMYAKCGSMRDAGM 326

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F    + ++D  +WN MI  Y  HG  ++   +++ M +S ++P+ ITF+G+L AC +A
Sbjct: 327 VF--YNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHA 384

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           G + +G     EM+  +G  P+ +HY  ++++LGRAG ++EA +L   MP + +  VW  
Sbjct: 385 GFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQTNPVVWRA 444

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LL+AC+++   +LAE+ A+K+  + P + GNYVL+SN Y AAG++  V  +R  +R + +
Sbjct: 445 LLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQQDV 504

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           KKTPGCSWIE+   ++ F   D++HP+A  IY  L +L   I E
Sbjct: 505 KKTPGCSWIELKNGMNTFINGDRNHPEARLIYPELHLLAAHIRE 548



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 217/452 (48%), Gaps = 24/452 (5%)

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIR 139
           +L+ +     ++ + N+L+ G +L  L + G     L  Y++M    + P + T+P +I+
Sbjct: 14  VLNRTADYARNVFAYNALISGFVLNGLPQDG-----LGAYEEMRQAGVLPDKYTFPCLIK 68

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS 199
               +++    +KIH  V KLG D    VG +LV  Y+K +   E      +  F ++  
Sbjct: 69  GLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKE-----ARELFDEIPD 123

Query: 200 R----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
           R    WNS+++   Q G+ +++  + + M  EG      T+  +L         + GR+V
Sbjct: 124 RDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLV 183

Query: 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315
           H   +   F   +SV  AL+ MY K   + DA  +F+ M++KD   WN ++SA       
Sbjct: 184 HGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDH 243

Query: 316 KESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--------SDY 367
             +L L   M+  G + DL T    + + S +  +  G+++H  ++ NG        + Y
Sbjct: 244 DGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMY 303

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            +   N+L+DMY +C  +  A  +F ++  +   SW+ MI GY  H    EAL +FS+M 
Sbjct: 304 NLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMC 363

Query: 428 LEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486
             G++ + +T + +L AC + G + + +K+L    +K G+       T +     + G +
Sbjct: 364 KSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQL 423

Query: 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           E A +L     I +  ++ W ++++A   +G+
Sbjct: 424 EEAYKLAVTMPIQTNPVV-WRALLAACQLYGN 454



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 188/379 (49%), Gaps = 14/379 (3%)

Query: 41  LCENPQHLQ--QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLL 98
           LCE  +  Q  +IH     L GL  ++ + S+L+ SY    L+  ++++F+ I   + +L
Sbjct: 70  LCEVMEVFQVKKIHGLVRKL-GLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVL 128

Query: 99  YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158
           + +++   ++ G +++ L V ++M+ + +  ++ T   V+   +   DF +G  +H  ++
Sbjct: 129 WNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMI 188

Query: 159 KLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSF 218
           K+GFDS   V +AL++ Y KC    +  +       KD+ S WNS++S        + + 
Sbjct: 189 KMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFS-WNSILSANELCSDHDGTL 247

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD--------LSV 270
            LF  M  +G + D  T+  +L +   L +L  GR +H   +V+ F KD        L  
Sbjct: 248 RLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQT 307

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
             AL+ MY+K  S+ DA M+F  MS++D   WNIMI  Y   G+  E+L +   M +SG 
Sbjct: 308 INALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGL 367

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANV-LRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
           + +  T +  + + S    I  G +    + L++G    +  +  +IDM      L  A 
Sbjct: 368 KPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAY 427

Query: 390 KIFDSVKTKT-VVSWSSMI 407
           K+  ++  +T  V W +++
Sbjct: 428 KLAVTMPIQTNPVVWRALL 446



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 122/250 (48%), Gaps = 9/250 (3%)

Query: 378 MYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
           MY +C  +N A  + +      + V +++++I G+V +    + L  + EM+  GV  D 
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T   ++     +  +  VK +HG   KLGL+    V +++  SY K   ++ A ELFDE
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
             I  +D++ WNSM++ YA+ G + +   +  +M Q  V     T  G+L+     G  +
Sbjct: 121 --IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFD 178

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
            GR++   M +  G++       +++++ G+   + +A E+ + M  K D   W  +LSA
Sbjct: 179 NGRLVHGFMIK-MGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEK-DIFSWNSILSA 236

Query: 616 ---CKMHSET 622
              C  H  T
Sbjct: 237 NELCSDHDGT 246



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 113/268 (42%), Gaps = 19/268 (7%)

Query: 55  YIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEK 114
           ++I  G    + + + LID Y     +  + ++F ++   +   + +IL       +++ 
Sbjct: 186 FMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDG 245

Query: 115 TLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD------- 167
           TL ++ +M    +     T   ++ +CS L   + G +IH  ++  GF    +       
Sbjct: 246 TLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNL 305

Query: 168 -VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
              +AL++ Y KC  G   + GM+   F ++ +R    WN +I     +G   ++  +F 
Sbjct: 306 QTINALMDMYAKC--GSMRDAGMV---FYNMSNRDTASWNIMIMGYGMHGYGNEALYMFS 360

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
            M   G + +  T + +L +      +  G + +  + +       +   T ++ M  + 
Sbjct: 361 DMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRA 420

Query: 282 ASLEDAKMLFDKMS-DKDRVVWNIMISA 308
             LE+A  L   M    + VVW  +++A
Sbjct: 421 GQLEEAYKLAVTMPIQTNPVVWRALLAA 448


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/515 (34%), Positives = 284/515 (55%), Gaps = 34/515 (6%)

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
           + T   LL+  ++L++L+ G  VH     S F   + ++  +L MY K  SL +AK LFD
Sbjct: 89  AATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFD 148

Query: 293 KMSDKDRVVWNIMISAYYQSGF-------------------------------PKESLEL 321
           +M+++D   WNIMIS Y ++G                                 +E+LEL
Sbjct: 149 EMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALEL 208

Query: 322 LMCMVR-SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
              M R   F+ + FT  +A+++ + ++++  GK++H ++LR G D    V ++L DMY 
Sbjct: 209 FRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYG 268

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  AR IFD    + VVSW++MI  Y    +  E   LFS++   G+  +  T   
Sbjct: 269 KCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSG 328

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC +  A E  K +HGY  ++G +  S   + +   Y KCG I+ A  +F+   +  
Sbjct: 329 VLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFN--GMPR 386

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            D+++W S+IS YA++G   +  + +  + +S  +PD ITF+G+L+AC +AGLV++G   
Sbjct: 387 PDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEY 446

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
           F  +KE +G   + +HYA +++LL R+G + EA +++  MP +PD  +W  LL  C++H 
Sbjct: 447 FDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHG 506

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
             +LA+  AE L  +EPEN   Y  L+NIYA AG W GVA++R  +  RG+ K PG SWI
Sbjct: 507 NLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWI 566

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           EI + VH F   D SH ++  I+  LG L   + E
Sbjct: 567 EIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKE 601



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 202/422 (47%), Gaps = 33/422 (7%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK- 187
           P+  TY  +++ C  L     G K+HA     GF     + + +++ YIKC+     ++ 
Sbjct: 87  PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRL 146

Query: 188 ----------------------GMIQ--RK-FKDLKSR----WNSLISLAVQNGKSEKSF 218
                                 G +Q  RK F  +  R    W ++ S  V++ + E++ 
Sbjct: 147 FDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEAL 206

Query: 219 ELFKLM-RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
           ELF+ M R E  + +  T+ + L ++  ++SL LG+ +H   +      D  V +AL  M
Sbjct: 207 ELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDM 266

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y K  S+ +A+ +FDK  D+D V W  MI  Y++ G  +E   L   +++SG   + FT 
Sbjct: 267 YGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTF 326

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
              +++ +     E GKQ+H  + R G D      ++L+ MY +C ++  AR++F+ +  
Sbjct: 327 SGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPR 386

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKY 456
             +VSW+S+I GY  + Q  EAL+ F  +   G + D +T + +L AC + G ++  ++Y
Sbjct: 387 PDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEY 446

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
                 K GL   +     +    ++ G ++ A ++ D+  I+  D   W S++     H
Sbjct: 447 FDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEP-DKFLWASLLGGCRIH 505

Query: 517 GD 518
           G+
Sbjct: 506 GN 507



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 157/346 (45%), Gaps = 4/346 (1%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I  YA  G L  ++++F+ +T  ++  +  +     +  ++E+ L +++ M     +  
Sbjct: 161 MISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKC 220

Query: 131 ED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T    + + + +     G++IH  ++++G D    V  AL + Y KC G     + +
Sbjct: 221 NKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKC-GSIGEARHI 279

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
             +        W ++I    + G+ E+ F LF  +   G   +  T   +L +  +  + 
Sbjct: 280 FDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAE 339

Query: 250 ELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY 309
           ELG+ VH       F       + L+ MY+K  ++++A+ +F+ M   D V W  +IS Y
Sbjct: 340 ELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGY 399

Query: 310 YQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL-RNGSDYQ 368
            Q+G P E+L+    +++SG + D  T +  +S+ +    ++ G +   ++  ++G  + 
Sbjct: 400 AQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHT 459

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
              +  LID+      L  A  I D +  +     W+S++ G   H
Sbjct: 460 ADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIH 505



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 49/246 (19%)

Query: 334 LFTAIAAVSSISTMKNIEWGKQ-MHANVLRNGSDYQV-------SVHNSLIDMYCECEDL 385
           LF+   A+ S ST    +  K  +H    ++G+  ++       +     ID+ CE + L
Sbjct: 15  LFSPRRAICSSSTTSQPQLSKPPIHNTFFKSGAKDELVKRLCKDNNFKEAIDILCEQKRL 74

Query: 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445
             A +I D V   +  ++S++                                   L  C
Sbjct: 75  REAIQILDHVDRPSAATYSTL-----------------------------------LQLC 99

Query: 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT 505
           + + AL+    +H ++   G      ++  I   Y KC  +  A  LFDE  +  +D+ +
Sbjct: 100 LQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDE--MAERDLCS 157

Query: 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           WN MIS YAK G   +  KL+ QM + D      ++  + +  V     EE   +F+ M+
Sbjct: 158 WNIMISGYAKAGRLQEARKLFDQMTERDN----FSWTAMTSGYVRHDQHEEALELFRAMQ 213

Query: 566 ESYGYE 571
               ++
Sbjct: 214 RHENFK 219


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 211/724 (29%), Positives = 362/724 (50%), Gaps = 85/724 (11%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS-----ITSPNSLLYGTI--- 102
           + AR +    L +N +  + +I  Y   G +++++++F++     ++S NS+L G     
Sbjct: 113 LEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSL 172

Query: 103 ----LKNL----------------SKFGEYE---KTLLVYKQMALQSMYPAEDTYPFVIR 139
                +NL                S +G  E   K   ++ +M  + + P +  +   + 
Sbjct: 173 QMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALS 232

Query: 140 SCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK----CDGGFENEKGMIQRKFK 195
           +   L +    E +    +K GF+    +G A++  Y +     D   +  + MI+R   
Sbjct: 233 AVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERN-- 290

Query: 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIV 255
             +  W+++I+     G+ + +  +++   ++     +  +  L          + GRI 
Sbjct: 291 --EYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLA---------QCGRID 339

Query: 256 HCVAVVSDFCKDLSVN-TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
               +     + + V+  AL++ Y +   + +AK LFDKM  ++ + W  MI+ Y Q+G 
Sbjct: 340 DARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            +E+L LL  + RSG    L +  +   + S +  +E G Q+H+  ++ G  +     N+
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNA 459

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           LI MY +C ++  AR++F  + TK +VSW+S +   V +D   EA   F  M L   +V 
Sbjct: 460 LITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-LSRDDVS 518

Query: 435 FVTIIN--------------------------------ILPACVNIGALEHVKYLHGYSM 462
           + TII+                                +L  C ++GA +  + +H  ++
Sbjct: 519 WTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAI 578

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           KLG++S   V  A+   Y KCGC + +  +FD   ++ +DI TWN++I+ YA+HG   + 
Sbjct: 579 KLGMDSELIVANALISMYFKCGCAD-SRRIFD--LMEERDIFTWNTIITGYAQHGLGREA 635

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
            K+Y  M+ + V P+ +TF+GLL AC +AGLV+EG   FK M + YG  P  EHYA MV+
Sbjct: 636 IKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVD 695

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGR G +  A + + DMP +PD  +W  LL ACK+H   E+ +  AEKL  +EP NAGN
Sbjct: 696 LLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGN 755

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
           YV+LSNIY++ G W  VA++R  ++ +G+ K PGCSW +I   +H F   D+ H Q + I
Sbjct: 756 YVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEI 815

Query: 703 YTIL 706
              L
Sbjct: 816 VATL 819



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 171/383 (44%), Gaps = 36/383 (9%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           ++S  +A +    +L  + +A+ +FD M  +D + WN MISAY  +G P  + +L   + 
Sbjct: 33  EVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAIS 92

Query: 327 RSGFR--ADLFTAIAAVSSISTMKNIEWG---------KQMHANVLRNGS---------- 365
               R  A L +    +  +   + +  G           M +  ++NG           
Sbjct: 93  GGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 366 --DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
                VS  NS++  YC    +  AR +F+ +  + +VSW+ MI GY   +   +A  +F
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIF 212

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK- 482
            +M  EG+  D     + L A   +G L+ ++ L   ++K G      + TAI   Y++ 
Sbjct: 213 CKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRD 272

Query: 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542
              ++ A + F  E +  ++  TW++MI+A +  G       +Y    + D    +    
Sbjct: 273 TSVLDTAIKFF--ESMIERNEYTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRT 326

Query: 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            L+T     G +++ RI+F+++      EP    + +++    + G ++EA+EL   MPF
Sbjct: 327 ALITGLAQCGRIDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 603 KPDARVWGPLLSACKMHSETELA 625
           + +   W  +++    +  +E A
Sbjct: 382 R-NTISWAGMIAGYAQNGRSEEA 403



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 103/502 (20%), Positives = 220/502 (43%), Gaps = 44/502 (8%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI--------------NLLRSTVEL 246
           WNS+IS    NG  + + +L+    + G    +G ++               +    +E 
Sbjct: 68  WNSMISAYCHNGMPDAARDLYDA--ISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLER 125

Query: 247 KSLELGRIVHCVAVVSDFC-----------KDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
            ++    ++ C     D             +D+S   ++L+ Y     + DA+ LF+KM 
Sbjct: 126 NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMP 185

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           +++ V W +MIS Y +     ++ ++   M R G   D     +A+S++  + N++  + 
Sbjct: 186 ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLES 245

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYC-ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           +    L+ G +  V +  +++++Y  +   L+ A K F+S+  +   +WS+MI       
Sbjct: 246 LRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGG 305

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
           +   A+ ++    ++ +      +I  L  C   G ++  + L     ++    + S N 
Sbjct: 306 RIDAAIAVYERDPVKSIACR-TALITGLAQC---GRIDDARILF---EQIPEPIVVSWN- 357

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   Y + G +  A ELFD  K+  ++ I+W  MI+ YA++G   +   L  ++ +S +
Sbjct: 358 ALITGYMQNGMVNEAKELFD--KMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            P L +   +  AC N   +E G  +   +    G + +     +++ + G+  +M+ AR
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQV-HSLAVKVGCQFNSFACNALITMYGKCRNMEYAR 474

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           ++   M  K D   W   L+A   +   + A  T + ++S +     ++  + + YA A 
Sbjct: 475 QVFSRMVTK-DIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDV---SWTTIISAYAHAE 530

Query: 655 KWN-GVAKMRTFLRDRGLKKTP 675
           + N  +   +T   +  L  +P
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSP 552



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 122/282 (43%), Gaps = 35/282 (12%)

Query: 42  CENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGT 101
           C N ++ +Q+ +R +      ++++  ++ + +     LL  ++  F+++ S + + + T
Sbjct: 467 CRNMEYARQVFSRMVT-----KDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTT 521

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           I+   +   +  + +  +K M  +   P       ++  C  L     G++IH   +KLG
Sbjct: 522 IISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLG 581

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKS 217
            DS   V +AL+  Y KC  G  + +    R F  ++ R    WN++I+   Q+G   ++
Sbjct: 582 MDSELIVANALISMYFKC--GCADSR----RIFDLMEERDIFTWNTIITGYAQHGLGREA 635

Query: 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
            ++++ M   G   +  T + LL +      ++ G           F K +S +  L  +
Sbjct: 636 IKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG---------WKFFKSMSQDYGLTPL 686

Query: 278 YSKLASLED-----------AKMLFDKMSDKDRVVWNIMISA 308
               A + D            + ++D   + D V+W+ ++ A
Sbjct: 687 PEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728


>gi|242046440|ref|XP_002461091.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
 gi|241924468|gb|EER97612.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
          Length = 695

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 210/659 (31%), Positives = 348/659 (52%), Gaps = 13/659 (1%)

Query: 31  TATHSFSLLNLCENP--QHLQQIHARYIILHGLHQNLILSSNLIDSYANL--GLLSLSQQ 86
             +H   LL L   P    ++++HA  +++ G   + +L++ L+ +YA L  G L  + +
Sbjct: 41  VGSHDSLLLRLQSGPALTEVRRLHA-ALLVRGYRTSTVLAAQLVRAYARLRDGGLGHAVR 99

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIRSCSCLL 145
           VF+ + + NS  +  ++K L   G + + L  Y  M       A+  TYP V+++C+ L 
Sbjct: 100 VFDGMLTRNSFAWNAVIKGLVDAGRFSEALQWYWDMVGDGSVVADRFTYPPVLKACAALG 159

Query: 146 DFISGEKIHAQV---VKLGFDSFDD-VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRW 201
               G K+   V   +  G    +  V  ALV+ + KC    E        + +DL + W
Sbjct: 160 VVEQGRKVQENVEADIARGIAKCNVFVQCALVDMFAKCGCLGEARNVFESMEVRDLAA-W 218

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
            ++I   V  G   +   L K M+ EG   DS  L  ++ +  ++K L  G  +H   V 
Sbjct: 219 TAMIGGTVHGGDWLEVMTLLKRMKSEGFRPDSMILATVIPACGKVKELRTGTALHGCVVK 278

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
                D  V  AL+ MY K A L+ A  LF  +  KD + W+ +I+ + Q+     S+ L
Sbjct: 279 CGVGVDTCVLNALVDMYCKCARLDFAASLFWSIDHKDVISWSTIIAGHSQNRRYHVSVSL 338

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              MV SG + +  T  + + S+S ++   +GK++H   LRNG ++   + ++LID Y  
Sbjct: 339 FSEMVASGVKPNSTTLASILPSLSELRLFRYGKEIHCFSLRNGLEHSEFLASALIDFYSR 398

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              +  A  +F+      +V  +SMI GYV ++ S  ALRL   +  EG+  D VT++++
Sbjct: 399 QGSIKEAEIVFEFTPKNDLVVSNSMIGGYVVNEDSESALRLLRALLKEGLRPDRVTVVSV 458

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           LP C     L   K LH Y+++  ++S  SV+ A+   Y KCGC+E+A E+F    +  +
Sbjct: 459 LPLCNQHSRLLQGKELHAYAIRHNISSCCSVSNALTDMYCKCGCLELAFEIF--LLMTER 516

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           + +T+N++IS+  KHG   Q F L+  MK+  V PD +TF+ LL+ C + GL+++G   +
Sbjct: 517 NTVTYNTLISSLGKHGHAEQAFFLFDLMKRDGVSPDKVTFVALLSCCSHEGLIDKGLCFY 576

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             M   Y   P +EHY+ +V+L  R+G +D A   + ++   P+  V G LLSAC+ H+ 
Sbjct: 577 DSMLRDYNISPDKEHYSCIVDLYSRSGRLDAAWSFIANLQEVPEIDVLGCLLSACREHNR 636

Query: 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
            ++AEL AE++    P + G ++LLSNIYA+AG W+ V ++RT + +R LKK  G S I
Sbjct: 637 MDIAELVAERIFEQNPNDPGYHILLSNIYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 695


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/445 (36%), Positives = 266/445 (59%), Gaps = 5/445 (1%)

Query: 255 VHCVAVVSDFCKDLSVNTALL---SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           +    + ++   D+SV T L+   ++    + ++ A  LFD++ DKD +++NIM   Y +
Sbjct: 48  IQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYAR 107

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           S  P  +  L   ++ SG   D +T  + + + ++ K +  G  +H   ++ G ++ + +
Sbjct: 108 SNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYI 167

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
             +LI+MY EC D+N AR +FD ++   +VS++++I GY    Q  EAL LF E++   +
Sbjct: 168 CPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNI 227

Query: 432 EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491
           E   VT+++++ +C  +GAL+  K++H Y  K G +    VNTA+   +AKCG +  A  
Sbjct: 228 EPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAIS 287

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +F+  ++  +D   W++MI A+A HGD  +   ++ +MK+  VRPD ITFLGLL AC +A
Sbjct: 288 IFEGMRV--RDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHA 345

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           GLVE+GR  F  M ++YG  P  +HY  MV+LLGRAGH+DEA   V  +  K    +W  
Sbjct: 346 GLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRT 405

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
           LLSAC  H   E+A+   E++  ++  + G+YV+LSN+YA  G+W  V  +R  ++DRG+
Sbjct: 406 LLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGV 465

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSH 696
            K PGCS +E+  +VHEF++ D  H
Sbjct: 466 VKVPGCSSVEVNNVVHEFFSGDGVH 490



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 154/303 (50%), Gaps = 2/303 (0%)

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           +F LF  +   G   D  T  +LL++    K+L  G  +HC AV      ++ +   L++
Sbjct: 114 AFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLIN 173

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY++   +  A+ +FD+M     V +N +I+ Y +S  P E+L L   +  S       T
Sbjct: 174 MYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVT 233

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            ++ + S + +  ++ GK +H  V + G D  V V+ +LIDM+ +C  L  A  IF+ ++
Sbjct: 234 MLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMR 293

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK- 455
            +   +WS+MI  + TH   L+A+ +F EMK EGV  D +T + +L AC + G +E  + 
Sbjct: 294 VRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRG 353

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
           Y +  S   G+         +     + G ++ A    D+ +I +  I+ W +++SA + 
Sbjct: 354 YFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPIL-WRTLLSACST 412

Query: 516 HGD 518
           HG+
Sbjct: 413 HGN 415



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/432 (21%), Positives = 197/432 (45%), Gaps = 14/432 (3%)

Query: 34  HSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLG----LLSLSQQVFN 89
           H  SLL+ C +   L+QI A Y I   L  ++ + + LI+ +  L      +  +  +F+
Sbjct: 31  HPLSLLSKCTSLNELKQIQA-YTIKTNLQSDISVLTKLIN-FCTLNPTTSYMDHAHHLFD 88

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
            I   + +L+  + +  ++         ++ ++    + P + T+  ++++C+       
Sbjct: 89  QILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALRE 148

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G  +H   VKLG +    +   L+  Y +C+      +G+     +     +N++I+   
Sbjct: 149 GMGLHCFAVKLGLNHNIYICPTLINMYAECND-MNAARGVFDEMEQPCIVSYNAIITGYA 207

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           ++ +  ++  LF+ ++    E    T+++++ S   L +L+LG+ +H       F K + 
Sbjct: 208 RSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVK 267

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           VNTAL+ M++K  SL DA  +F+ M  +D   W+ MI A+   G   +++ +   M R G
Sbjct: 268 VNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREG 327

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCA 388
            R D  T +  + + S    +E G+    ++ +  G    +  +  ++D+      L+ A
Sbjct: 328 VRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEA 387

Query: 389 RKIFDSVKTK-TVVSWSSMIKGYVTHDQSLEALRLFSEM-KLEGVE-VDFVTIINILPAC 445
               D ++ K T + W +++    TH     A R+   + +L+     D+V + N+    
Sbjct: 388 YNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLY--- 444

Query: 446 VNIGALEHVKYL 457
             +G  E V +L
Sbjct: 445 ARVGRWEDVNHL 456


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 209/729 (28%), Positives = 388/729 (53%), Gaps = 54/729 (7%)

Query: 31  TATHSFSLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           T    F LL L     +P   + +HA+++    L +++ L + LI +Y  LGL+  + +V
Sbjct: 96  TIASPFDLLRLSTRYGDPDLARAVHAQFL---KLEEDIFLGNALISAYLKLGLVRDADKV 152

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F+ ++ PN + Y  ++   SK    ++ + ++  M    + P E T+  ++ +C   +D+
Sbjct: 153 FSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDY 212

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
             G ++H  VVKLG  S   + +AL+  Y KC  GF +   ++ R F+++  R    WN+
Sbjct: 213 QLGSQVHGIVVKLGLLSCVFICNALMGLYCKC--GFLD---LVLRLFEEMPERDITSWNT 267

Query: 204 LISLAVQNGKSEKSFELFKLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +IS  V+  K +++F+ F+ M++ +G + D  +L  LL +         G+ +H +A+  
Sbjct: 268 VISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKV 327

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF-------- 314
                LSV+++L+  Y+K  S  D   LF+ M  +D + W  MI++Y + G         
Sbjct: 328 GLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVF 387

Query: 315 ---PKE--------------------SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
              PK                     +LEL + M+  G      T  + +++   +K+ +
Sbjct: 388 NKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFK 447

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF--DSVKTKTVVSWSSMIKG 409
             +Q+   V++ G      +  +L+DMY  C  +  A KIF   S++       +SMI G
Sbjct: 448 VSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICG 507

Query: 410 YVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           Y  + +  EA+ LF   + EG + +D V   +IL  C +IG  E  K +H +++K GL +
Sbjct: 508 YARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMHCHALKSGLIT 567

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            + V  A    Y+KC  ++ A  +F+   ++ +DI++WN +++ +  H    +   ++ +
Sbjct: 568 ETGVGNATVSMYSKCWNMDDAVRVFN--TMNMQDIVSWNGLVAGHVLHWQGDKALGIWKK 625

Query: 529 MKQSDVRPDLITFLGLLTACVNA--GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
           M+++ ++PD ITF  +++A  +    LV+  R +F  M+  +  +P+ EHYAS +++LGR
Sbjct: 626 MEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGR 685

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
            G ++EA + +++MP +PD  VW  LL++C+++    L +L A  ++++EP++  +Y+L 
Sbjct: 686 WGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILK 745

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SN+Y+A+G+W    K+R  +R++G +K P  SWI     +H F+A D+SHPQ   IY+ L
Sbjct: 746 SNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGL 805

Query: 707 GILELEIME 715
            IL LE ++
Sbjct: 806 EILILECLK 814


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  328 bits (840), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/481 (36%), Positives = 264/481 (54%), Gaps = 41/481 (8%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMS----DKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +AL++ ++     E A  L ++M     + + + WN ++S   +SG  ++++  L+ M  
Sbjct: 90  SALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG 149

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
            GF  D      A+S++  + ++  G+Q+H  V++ G      V  +LIDMY +C   + 
Sbjct: 150 EGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADE 209

Query: 388 ARKIFDSVKTK-----------------------------------TVVSWSSMIKGYVT 412
             ++FD                                         VVSW+S++   V 
Sbjct: 210 IVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQ 269

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           + + LEA+ LF EM+ EG+E + VTI  +LPA  NI AL H +  H +S++ G +    V
Sbjct: 270 NGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYV 329

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   YAKCG +  A  +F  E +  +++++WN+MI  YA HG+     +L+  M+ S
Sbjct: 330 GSALVDMYAKCGRVRDARMIF--EAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSS 387

Query: 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592
             +PDL+TF  +L AC  AG  EEGR  F EM+  +G  P  EHYA MV LLGRAG +D+
Sbjct: 388 KEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDD 447

Query: 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652
           A +++  MPF+PD  +WG LL +C++H    LAE+ AE L  +EPENAGNYVLLSNIYA+
Sbjct: 448 AYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYAS 507

Query: 653 AGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
              W+GV ++R  ++  GLKK  GCSWIEI   VH   A D SHP   AI   L  L +E
Sbjct: 508 KKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTME 567

Query: 713 I 713
           +
Sbjct: 568 M 568



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 149/337 (44%), Gaps = 39/337 (11%)

Query: 57  ILHGL-HQNLILSSNLIDSYANLG----LLSLSQQVFNSITSPNSLLYGTILKNLSKFGE 111
           +L G+ H+ ++  S LI ++A+ G       L +++ +    PN + +  ++  L++ G 
Sbjct: 77  VLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGR 136

Query: 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171
               +L   +M  +   P        + +   + D   GE++H  VVK G      V  A
Sbjct: 137 ARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATA 196

Query: 172 LVEFYIKCDGG------FENEKGM--------------------IQRKFKDLKSR----- 200
           L++ Y KC         F+    M                      R F++   R     
Sbjct: 197 LIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELN 256

Query: 201 ---WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              W S+++  VQNG+  ++ +LF+ M+ EG E +S T+  +L +   + +L  GR  HC
Sbjct: 257 VVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHC 316

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKE 317
            ++   F  D+ V +AL+ MY+K   + DA+M+F+ M  ++ V WN MI  Y   G  + 
Sbjct: 317 FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAEN 376

Query: 318 SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGK 354
           ++ L   M  S  + DL T    + + S     E G+
Sbjct: 377 AVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGR 413



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 163/380 (42%), Gaps = 45/380 (11%)

Query: 181 GGFENEKGMIQRKFKDLKS----RWNSLISLAVQNGKSEKSFELFKLMRMEGAEF--DSG 234
           G  E   G+++R   D        WN L+S   ++G++  +  +  L+RM G  F  D+ 
Sbjct: 100 GDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDA--VLALVRMHGEGFLPDAT 157

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            +   L +  ++  + +G  +H   V +    D  V TAL+ MY K    ++   +FD+ 
Sbjct: 158 GVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDES 217

Query: 295 SDKDR-----------------------------------VVWNIMISAYYQSGFPKESL 319
           S  D                                    V W  +++   Q+G   E++
Sbjct: 218 SHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAV 277

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           +L   M   G   +  T    + + + +  +  G+  H   LR G  + + V ++L+DMY
Sbjct: 278 DLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMY 337

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C  +  AR IF+++  + VVSW++MI GY  H ++  A+RLF  M+    + D VT  
Sbjct: 338 AKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFT 397

Query: 440 NILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +L AC   G  E  + Y +    K G++        +     + G ++ A ++ ++   
Sbjct: 398 CVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPF 457

Query: 499 DSKDIITWNSMISAYAKHGD 518
           +    I W S++ +   HG+
Sbjct: 458 EPDGCI-WGSLLGSCRVHGN 476



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 133/325 (40%), Gaps = 74/325 (22%)

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V +SL+  Y        AR + D +  +TVV WS++I  + +H  +  A  L   M+ +G
Sbjct: 57  VASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDG 116

Query: 431 VEVDFVT-----------------------------------IINILPACVNIGALEHVK 455
           VE + +T                                   +   L A  ++G +   +
Sbjct: 117 VEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGE 176

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            LHGY +K G    + V TA+   Y KCG  +    +FDE      D+ + N++++  ++
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESS--HMDVASCNALVAGLSR 234

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +   S+  +L+ +     +  +++++  ++  CV  G   E   +F+EM +S G EP+  
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREM-QSEGIEPNSV 293

Query: 576 ------------------------------HY-----ASMVNLLGRAGHMDEARELVKDM 600
                                         H+     +++V++  + G + +AR + + M
Sbjct: 294 TIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAM 353

Query: 601 PFKPDARVWGPLLSACKMHSETELA 625
           P++ +   W  ++    MH E E A
Sbjct: 354 PYR-NVVSWNAMIGGYAMHGEAENA 377



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/299 (19%), Positives = 124/299 (41%), Gaps = 43/299 (14%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-----SITSPNSLLYG--- 100
           +Q+H  Y++  G   +  +++ LID Y   G      +VF+      + S N+L+ G   
Sbjct: 176 EQLHG-YVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSR 234

Query: 101 ---------------------------TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
                                      +I+    + G   + + ++++M  + + P   T
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVT 294

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI--Q 191
            P V+ + + +   + G   H   ++ GF     VG ALV+ Y KC  G   +  MI   
Sbjct: 295 IPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKC--GRVRDARMIFEA 352

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
             ++++ S WN++I     +G++E +  LF+ M+    + D  T   +L +  +    E 
Sbjct: 353 MPYRNVVS-WNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEE 411

Query: 252 GR-IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
           GR   + +         +     ++++  +   L+DA  + ++M  + D  +W  ++ +
Sbjct: 412 GRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGS 470



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
           G++  + V +++  +Y + G    A  + D   +  + ++ W+++I+A+A HGD    + 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLD--GMPHRTVVGWSALIAAHASHGDAEGAWG 107

Query: 525 LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584
           L  +M+   V P++IT+ GL++    +G   +  +    M    G+ P     +  ++ +
Sbjct: 108 LLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRM-HGEGFLPDATGVSCALSAV 166

Query: 585 GRAGHMDEAREL 596
           G  G +    +L
Sbjct: 167 GDVGDVAVGEQL 178


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  328 bits (840), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 209/678 (30%), Positives = 357/678 (52%), Gaps = 20/678 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA    L     +  + ++L+  Y   G +  +++VF  +   N + +  ++  ++ 
Sbjct: 83  RQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVA- 141

Query: 109 FGEYEKTLLVYKQMALQSM----YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDS 164
             +  + L +++   L+ +     P E T   V+  C+ L    +G  +H   VK G+D+
Sbjct: 142 --DPRRGLELFRD-CLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA 198

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKS--RWNSLISLAVQNGKSEKSFELFK 222
              V + LV+ Y KC    + E   ++      ++   WN ++    +NG++  +F L +
Sbjct: 199 APRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLR 258

Query: 223 LMRME--GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF--CKDLSVNTALLSMY 278
            M+ME  G   D  T++++L     L  L   R +H   V        D+ V  AL++ Y
Sbjct: 259 EMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDM-VPNALIAAY 317

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS-GFRADLFTA 337
            +   L  A  +FD +  K    WN +I A+ Q+G    ++EL   M  + G + D F+ 
Sbjct: 318 GRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSI 377

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            + + +   +K++  GK  H  +LRNG +    +  SL+ +Y +C   + AR +FD+V+ 
Sbjct: 378 GSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEE 437

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEM--KLEGVEVDFVTIINILPACVNIGALEHVK 455
           K  VSW++MI GY  +    E+L+LF EM  K  G     +   + L AC  + A+   K
Sbjct: 438 KDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGK 497

Query: 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
            +H +++K  L   S ++++I   Y+KCG ++ A   FD  ++ +KD ++W  MI+ YA 
Sbjct: 498 EMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFD--RLKAKDAVSWTVMITGYAV 555

Query: 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575
           +G   +   LY +M +  + PD  T+LGLL AC +AG++E+G   F+EM+     E   E
Sbjct: 556 NGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLE 615

Query: 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
           HYA ++ +L RAG   +A  L++ MP +PDA++   +LSAC MH E EL +  A+KL+ +
Sbjct: 616 HYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLEL 675

Query: 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQS 695
           EP  A +YVL SN+YA + +W+ + K+R  LRD G+ K PGCSWI+I   V+ F A + S
Sbjct: 676 EPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENS 735

Query: 696 HPQADAIYTILGILELEI 713
            P+   +  +   LE +I
Sbjct: 736 LPEMHKVRKMWYSLEEKI 753


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 198/633 (31%), Positives = 337/633 (53%), Gaps = 8/633 (1%)

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           ++F+ +   +S+ + T++   +  G+ E +  ++  M     Y    ++  +++  +   
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
            F  GE++H  VVK G++    VG +LV+ Y KC+   E+  G      +     WN+LI
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCER-VEDAFGAFMEILEPNSVSWNALI 120

Query: 206 SLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           +  VQ   ++ +F L  LM M+ A   D GT   LL    +     L + VH   +    
Sbjct: 121 AGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGL 180

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISAYYQSGFPKESLELLM 323
             ++++  A++S Y+    + DAK +FD +   KD + WN MI+   +    + + EL  
Sbjct: 181 EHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFT 240

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
            M R+    D++T    VS+ S  ++  +GK +H  V++ G +   SV N+LI MY +  
Sbjct: 241 EMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFP 300

Query: 384 D--LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
              +  A  +F+S+K K +VSW+S++ G+  +  S +A++ F  ++   +EVD      +
Sbjct: 301 TGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAV 360

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L +C ++  L+  +  H  + K    S   V +++ + Y+KCG IE A + F  E+I SK
Sbjct: 361 LRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCF--EQISSK 418

Query: 502 -DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
            + I WN+MI  YA+HG       L++QM   +V+ D +TF  +LTAC + GL++EG  +
Sbjct: 419 HNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLEL 478

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
              M+  Y  +P  EHYA+ V+LLGRAG +++ +EL++ MP  PD  V    L  C+   
Sbjct: 479 LNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVCRACG 538

Query: 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWI 680
           E E+A   A  L+ +EPE+   YV LS++Y+   KW   A ++  +++RG+KK PG SWI
Sbjct: 539 EIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVPGWSWI 598

Query: 681 EIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           EI   V+ F A D+SH  +  IY ++  L  E+
Sbjct: 599 EIRNQVNAFNAEDRSHSLSKEIYLMIEDLTQEM 631



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 207/416 (49%), Gaps = 21/416 (5%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+H   ++  G   N+ + S+L+D YA    +  +   F  I  PNS+ +  ++    +
Sbjct: 67  EQVHG-LVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIAGFVQ 125

Query: 109 FGEYEKTLLVYKQMALQSMYPAED-TYPFVIR------SCSCLLDFISGEKIHAQVVKLG 161
             + +    +   M +++    +D T+  ++        C+ L      +++HA+V+KLG
Sbjct: 126 VRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLL------KQVHAKVLKLG 179

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFE 219
            +    + +A++  Y  C G   + K +       KDL S WNS+I+   ++ + E +FE
Sbjct: 180 LEHEITICNAMISSYANC-GLVSDAKRVFDGLGGSKDLIS-WNSMIAGLSKHEQKESAFE 237

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
           LF  M     E D  T   ++ +    +    G+ +H + +     +  SV+ AL+SMY 
Sbjct: 238 LFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYI 297

Query: 280 KLAS--LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           +  +  ++DA  LF+ +  KD V WN +++ + Q+G  +++++    +  S    D +  
Sbjct: 298 QFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAF 357

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
            A + S S +  ++ G+Q HA   ++  +    V +SLI MY +C  +  ARK F+ + +
Sbjct: 358 SAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISS 417

Query: 398 K-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           K   ++W++MI GY  H     +L LFS+M  + V++D VT   IL AC + G ++
Sbjct: 418 KHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQ 473



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 170/326 (52%), Gaps = 9/326 (2%)

Query: 38  LLNLCENPQH---LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           LL L ++P     L+Q+HA+ + L GL   + + + +I SYAN GL+S +++VF+ +   
Sbjct: 155 LLTLLDDPMFCNLLKQVHAKVLKL-GLEHEITICNAMISSYANCGLVSDAKRVFDGLGGS 213

Query: 95  NSLL-YGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
             L+ + +++  LSK  + E    ++ +M    +     TY  ++ +CS       G+ +
Sbjct: 214 KDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSL 273

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI--QRKFKDLKSRWNSLISLAVQN 211
           H  V+K G +    V +AL+  YI+   G   +   +    K KDL S WNS+++   QN
Sbjct: 274 HGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLFESLKPKDLVS-WNSIMTGFSQN 332

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G SE + + F+ +R    E D      +LRS  +L +L+LG+  H +A  S F  +  V 
Sbjct: 333 GLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVT 392

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
           ++L+ MYSK   +E+A+  F+++S K + + WN MI  Y Q G  + SL+L   M     
Sbjct: 393 SSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNV 452

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQM 356
           + D  T  A +++ S    I+ G ++
Sbjct: 453 KLDHVTFTAILTACSHTGLIQEGLEL 478


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/664 (28%), Positives = 343/664 (51%), Gaps = 46/664 (6%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIHA   +  GL  ++   S L+D Y     L  +   F+ +   NS+ +G ++    + 
Sbjct: 184 QIHA-LAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQN 242

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
            +Y + L +                   +  C  +    +  ++HA  +K  F S   VG
Sbjct: 243 EQYMRGLEL-------------------LCRCKAITCLSTARQLHAHAIKNKFSSDRVVG 283

Query: 170 DALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229
            A+V+ Y K D   +  +         +++  N+++   V+ G   ++ +LF+ M   G 
Sbjct: 284 TAIVDVYAKADSLVDARRAFFGLPNHTVET-CNAMMVGLVRTGLGAEAMQLFQFMTRSGI 342

Query: 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289
            F   +L  +  +  E+K  ++               D+ V  A+L +Y K  +L +A +
Sbjct: 343 GFGVVSLSGVFSACAEVKGFDV---------------DVCVRNAILDLYGKCKALVEAYL 387

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
           +F +M  +D V WN +I+A  Q+   ++++  L  M+RSG  AD FT  + + + + +++
Sbjct: 388 VFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQS 447

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           +E+G  +H   +++G      V ++++DMYC+C  +  A K+ D +  + +VSW+S+I G
Sbjct: 448 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSWNSIIAG 507

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469
           +  + QS EA + FSEM   GV+ D  T   +L +C N+  +E  K +HG  +K  +   
Sbjct: 508 FSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGD 567

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQM 529
             +++ +   YAKCG +  +  +F  EK+   D ++WN+MI  YA HG   +  +++ + 
Sbjct: 568 EFISSTLVDMYAKCGNMPDSQLMF--EKVQKLDFVSWNAMICGYALHGQGFEALEMFERT 625

Query: 530 KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
           ++++V P+  TF+ +L AC + GL+++G   F  M   Y  EP  EH+A M         
Sbjct: 626 QKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACM--------G 677

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
             EA + ++ MP + DA +W  LLS CK+  + E+AE  A  ++ ++P+++  Y+LLSN+
Sbjct: 678 PQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNV 737

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           YA +GKW  V++ R  +R   LKK PGCSWIE+   +H F   ++ HP++  +Y +L  L
Sbjct: 738 YAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLVGEKVHPRSREVYEMLNNL 797

Query: 710 ELEI 713
             E+
Sbjct: 798 ICEM 801



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 152/655 (23%), Positives = 293/655 (44%), Gaps = 90/655 (13%)

Query: 13  SGHVKFLRFPANQTRP-----HMTATHSFS-LLNLCENPQHL-----QQIHARYII---- 57
           +GH+     P    RP        AT +FS +  LC +  H      Q  HAR ++    
Sbjct: 4   TGHITRSLSPGCPGRPTPAQAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSGFV 63

Query: 58  ---------------------LHGL-----HQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
                                 HG+     H++ +  + ++ +YA++G   ++  +   +
Sbjct: 64  PTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVM 123

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
             P+ + +  +L    + G +   + +  +MA   + P   T   ++++C  L D   G 
Sbjct: 124 PDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGV 183

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLA 208
           +IHA  VK G +     G ALV+ Y KC   +       GM +R        W ++I+  
Sbjct: 184 QIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERN----SVSWGAVIAGC 239

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
           VQN +  +  EL  L R +                  +  L   R +H  A+ + F  D 
Sbjct: 240 VQNEQYMRGLEL--LCRCKA-----------------ITCLSTARQLHAHAIKNKFSSDR 280

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            V TA++ +Y+K  SL DA+  F  + +      N M+    ++G   E+++L   M RS
Sbjct: 281 VVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRS 340

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G    + +     S+ + +K               G D  V V N+++D+Y +C+ L  A
Sbjct: 341 GIGFGVVSLSGVFSACAEVK---------------GFDVDVCVRNAILDLYGKCKALVEA 385

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
             +F  ++ +  VSW+++I     ++   + +   +EM   G+E D  T  ++L AC  +
Sbjct: 386 YLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGL 445

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
            +LE+   +HG ++K GL   + V++ +   Y KCG I  A +L D  +I  +++++WNS
Sbjct: 446 QSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHD--RIGGQELVSWNS 503

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM--KE 566
           +I+ ++ +    +  K +++M    V+PD  T+  +L +C N   +E G+ I  ++  +E
Sbjct: 504 IIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQE 563

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             G E      +++V++  + G+M +++ + + +  K D   W  ++    +H +
Sbjct: 564 MLGDEFIS---STLVDMYAKCGNMPDSQLMFEKVQ-KLDFVSWNAMICGYALHGQ 614



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/544 (22%), Positives = 228/544 (41%), Gaps = 72/544 (13%)

Query: 125 QSMYPAEDTYPFVIRSCSCL--LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
           Q+ + A  T+  V + C+        +G+  HA+++  GF     V + L++ Y +C G 
Sbjct: 23  QAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGA 82

Query: 183 FENEKGMIQRKFKDLKS------------------------------RWNSLISLAVQNG 212
                       +D  S                               WN+L+S   Q G
Sbjct: 83  AHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRG 142

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
                  L   M   G   D  TL  LL++   L  L LG  +H +AV +    D+   +
Sbjct: 143 MFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGS 202

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           AL+ MY K  SLEDA   F  M +++ V W  +I+   Q+      LELL C  +     
Sbjct: 203 ALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELL-CRCK----- 256

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
                  A++ +ST       +Q+HA+ ++N       V  +++D+Y + + L  AR+ F
Sbjct: 257 -------AITCLST------ARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRAF 303

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +   TV + ++M+ G V      EA++LF  M   G+    V++  +  AC  +    
Sbjct: 304 FGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVK--- 360

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
                       G +    V  AI   Y KC  +  A  +F E  ++ +D ++WN++I+A
Sbjct: 361 ------------GFDVDVCVRNAILDLYGKCKALVEAYLVFQE--MEQRDSVSWNTIIAA 406

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF-KEMKESYGYE 571
             ++  +        +M +S +  D  T+  +L AC     +E G ++  K +K   G +
Sbjct: 407 LEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLD 466

Query: 572 PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631
                 +++V++  + G + EA +L  D     +   W  +++   ++ ++E A+    +
Sbjct: 467 AFVS--STVVDMYCKCGMITEALKL-HDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSE 523

Query: 632 LISM 635
           ++ M
Sbjct: 524 MLDM 527


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 198/627 (31%), Positives = 328/627 (52%), Gaps = 54/627 (8%)

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
           ++ S N ++ G +     + G  E  L ++ +M      P   T   ++ +C+ L     
Sbjct: 9   TVNSWNGIISGCV-----QNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRL 63

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAV 209
           G+ IHA  +K G      V  ++++ Y KC      EK  ++ + K+  + WN +I+  V
Sbjct: 64  GKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKN-TAMWNEMIAAYV 122

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
             GK E +  L + M+ +G + D                     ++    ++S   ++  
Sbjct: 123 NEGKVEDALGLLRSMQKDGWKPD---------------------VITYNTILSGHARN-G 160

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCM--- 325
           + T    + S++           +M  K  VV +N++IS + QSG   E+L++   M   
Sbjct: 161 LKTQAFELLSEMV----------QMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSP 210

Query: 326 ---------VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
                    +    R +  T   A+ + + +     GK++H   LRNG +  + V ++L+
Sbjct: 211 SDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALV 270

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV 436
           DMY +C D++ A K+F  +  +  VSW++++ GY+ + Q  EAL+LF EM  EG++   +
Sbjct: 271 DMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSI 330

Query: 437 TIINILPACVNIGALEHVKYLHGYSMKLGLNSL-SSVNTAIFISYAKCGCIEMAGELFDE 495
           T + + PAC +I A+   + LHGY+ K  L+ L +++ +A+   YAKCG I  A  +FD 
Sbjct: 331 TFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDS 390

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
           E    KD+  WN+MISA++ HG     F ++ QM+   + PD ITF+ LL+AC   GLVE
Sbjct: 391 EV--EKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVE 448

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           EG   F  M+ SYG   + EHY  MV +LG AG +DEA + ++ MP+ PDA +W  LL A
Sbjct: 449 EGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQA 508

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           C++HS  E+ E  A+ L  +EP+NA NY+LLSNIY ++G W+    +R+F+R R L    
Sbjct: 509 CRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIK 568

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAI 702
            CS++ +G  +  F   + SHP+ + I
Sbjct: 569 ECSYLTVGSHICTFKGGESSHPELEEI 595



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 224/474 (47%), Gaps = 50/474 (10%)

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           M +R  +   + WN +IS  VQNG  E + ++F  M     + +  T+ ++L +   LK+
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L LG+ +H +A+      ++ V  +++ MYSK  S + A+ +F K  +K+  +WN MI+A
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAA 120

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           Y   G  +++L LL  M + G++ D+ T    +S              HA   RNG   Q
Sbjct: 121 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSG-------------HA---RNGLKTQ 164

Query: 369 V-SVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
              + + ++ M  +                  VVS++ +I G+     S EAL++F  M+
Sbjct: 165 AFELLSEMVQMGLK----------------PNVVSFNVLISGFQQSGLSYEALKVFRIMQ 208

Query: 428 LE------------GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
                          +  + +TI   LPAC ++      K +HGY+++ G      V++A
Sbjct: 209 SPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSA 268

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAKC  ++ A ++F   +ID ++ ++WN++++ Y  +    +  KL+ +M    ++
Sbjct: 269 LVDMYAKCHDMDSANKVF--FRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQ 326

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           P  ITF+ L  AC +   +  GR +     +    E      ++++++  + G + +A+ 
Sbjct: 327 PSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKS 386

Query: 596 LVKDMPFKPDARVWGPLLSACKMH--SETELAELTAEKLISMEPENAGNYVLLS 647
            V D   + D  +W  ++SA  +H  +    A     +L+ + P++     LLS
Sbjct: 387 -VFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLS 439



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 147/312 (47%), Gaps = 20/312 (6%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS----PNSLLYGTILKNLSKFGEYEKT 115
           G   ++I  + ++  +A  GL + + ++ + +      PN + +  ++    + G   + 
Sbjct: 141 GWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEA 200

Query: 116 LLVYKQMALQS------------MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFD 163
           L V++ M   S            M P   T    + +C+ L  +  G++IH   ++ GF+
Sbjct: 201 LKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFE 260

Query: 164 SFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
               V  ALV+ Y KC       K   +   ++  S WN+L++  + N + E++ +LF  
Sbjct: 261 PNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVS-WNALMAGYIYNKQPEEALKLFLE 319

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS--DFCKDLSVNTALLSMYSKL 281
           M  EG +  S T + L  +  ++ ++  GR +H  A     D  K+ ++ +AL+ MY+K 
Sbjct: 320 MLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKN-AIASALIDMYAKC 378

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
            S+ DAK +FD   +KD  +WN MISA+   G  + +  + + M   G   D  T ++ +
Sbjct: 379 GSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLL 438

Query: 342 SSISTMKNIEWG 353
           S+ +    +E G
Sbjct: 439 SACARDGLVEEG 450



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 115/263 (43%), Gaps = 5/263 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           ++IH  Y + +G   N+ +SS L+D YA    +  + +VF  I   N++ +  ++     
Sbjct: 248 KEIHG-YTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIY 306

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD- 167
             + E+ L ++ +M  + + P+  T+  +  +C  +     G  +H    K   D   + 
Sbjct: 307 NKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNA 366

Query: 168 VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRME 227
           +  AL++ Y KC G   + K +   + +     WN++IS    +G +  +F +F  M + 
Sbjct: 367 IASALIDMYAKC-GSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELL 425

Query: 228 GAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           G   D  T ++LL +      +E G +  + + +       L   T ++ +      L++
Sbjct: 426 GILPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDE 485

Query: 287 AKMLFDKMS-DKDRVVWNIMISA 308
           A     +M    D  +W  ++ A
Sbjct: 486 ALDFIRQMPYPPDACMWATLLQA 508


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/477 (36%), Positives = 265/477 (55%), Gaps = 37/477 (7%)

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           T +++ Y +   L+ A+   D M++K  V WN MIS Y   GF  E+LE+   M   G +
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS----DYQVSVHNSLIDMYCECEDLNC 387
            D FT  + +S+ +       GKQ+HA +LR       D+ +SV+N+L  +Y +C  ++ 
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA---------------------------- 419
           AR++F+ +  K +VSW++++ GYV   +  EA                            
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 420 ---LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476
              L+LF+ MK EG E         + AC  + AL H + LH   ++LG +S  S   A+
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
              YAKCG +E A  LF    +   D ++WN+MI+A  +HG  +Q  +L+  M + D+ P
Sbjct: 469 ITMYAKCGVVEAAHCLF--LTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILP 526

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
           D ITFL +L+ C +AGLVEEG   FK M   YG  P ++HYA M++LL RAG   EA+++
Sbjct: 527 DRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDM 586

Query: 597 VKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656
           ++ MP +P   +W  LL+ C++H   +L    AE+L  + P++ G YVLLSN+YA  G+W
Sbjct: 587 IETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRW 646

Query: 657 NGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           + VAK+R  +RD+G+KK PGCSWIE+   VH F   D  HP+  A+Y  L  L L++
Sbjct: 647 DDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKM 703



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 204/480 (42%), Gaps = 109/480 (22%)

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD----------- 296
           S  + R VH   + S F     +   L+ +Y K + L  A  LFD++             
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIA 89

Query: 297 ----------------------KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
                                 +D V +N MI+ Y  +     ++EL   ++R+GFR D 
Sbjct: 90  AHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDN 149

Query: 335 FTAIAAVSSIS-TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE---------- 383
           FT  + + +++  +++ +  +Q+H  V+++GS +  SV N+L+ ++ +C           
Sbjct: 150 FTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSL 209

Query: 384 ------------------------------DLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
                                         +L+ AR+  D +  K VV+W++MI GYV H
Sbjct: 210 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 269

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL----GLNSL 469
              LEAL +F +M L G++ D  T  ++L AC N G   H K +H Y ++      L+  
Sbjct: 270 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 329

Query: 470 SSVNTAIFISYAKCGCIEMAGELFDE-----------------------------EKIDS 500
            SVN A+   Y KCG ++ A ++F++                             E++  
Sbjct: 330 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           ++++TW  MIS  A++G   +  KL+ +MK     P    F G + AC     +  GR +
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQL 449

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS 620
             ++    G++ S     +++ +  + G ++ A  L   MP+  D+  W  +++A   H 
Sbjct: 450 HAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAALGQHG 507



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 204/468 (43%), Gaps = 81/468 (17%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVF--NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQ 121
           +++  + LI ++++ G  +L++++F    +   +++ Y  ++   S   +    + +++ 
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 122 MALQSMYPAEDTYPFVIRSCSCLL-DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           +      P   T+  V+ + + ++ D    ++IH  VVK G      V +AL+  ++KC 
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 181 ----------------------------------GGFENEKGMIQRKFKD-----LKSRW 201
                                             G   N +    R+F D     L   W
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           N++IS  V +G   ++ E+F+ M + G ++D  T  ++L +         G+ VH   + 
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 262 S------DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN------------ 303
           +      DF   LSVN AL ++Y K   +++A+ +F++M  KD V WN            
Sbjct: 320 TEPRPSLDF--SLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRI 377

Query: 304 -------------------IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344
                              +MIS   Q+GF +ESL+L   M   GF    +    A+ + 
Sbjct: 378 DEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIAC 437

Query: 345 STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           + +  +  G+Q+HA ++R G D  +S  N+LI MY +C  +  A  +F ++     VSW+
Sbjct: 438 AWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWN 497

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +MI     H    +AL LF  M  E +  D +T + +L  C + G +E
Sbjct: 498 AMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVE 545



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 169/402 (42%), Gaps = 48/402 (11%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + +I  Y   G L  ++Q  + +T    + +  ++      G + + L ++++M L  + 
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL----GFDSFDDVGDALVEFYIKCDGGFE 184
             E TY  V+ +C+    F+ G+++HA +++       D    V +AL   Y KC    E
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 185 NEKGMIQRKFKDLKS------------------------------RWNSLISLAVQNGKS 214
             +   Q   KDL S                               W  +IS   QNG  
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E+S +LF  M+ EG E         + +   L +L  GR +H   V   F   LS   AL
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY+K   +E A  LF  M   D V WN MI+A  Q G   ++LEL   M++     D 
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDR 528

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANV-----LRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
            T +  +S+ S    +E G +   ++     +  G D+    +  +ID+ C     + A+
Sbjct: 529 ITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDH----YARMIDLLCRAGKFSEAK 584

Query: 390 KIFDSVKTKTVVS-WSSMIKGYVTH---DQSLEAL-RLFSEM 426
            + +++  +     W +++ G   H   D  ++A  RLF  M
Sbjct: 585 DMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELM 626



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 63  QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM 122
           ++L+  + ++  Y N G +  ++  F  +   N L +  ++  L++ G  E++L ++ +M
Sbjct: 359 KDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRM 418

Query: 123 ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG 182
             +   P +  +   I +C+ L   + G ++HAQ+V+LGFDS    G+AL+  Y KC G 
Sbjct: 419 KSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKC-GV 477

Query: 183 FENEKGM-IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
            E    + +   + D  S WN++I+   Q+G   ++ ELF+LM  E    D  T + +L 
Sbjct: 478 VEAAHCLFLTMPYLDSVS-WNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLS 536

Query: 242 STVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDR 299
           +      +E G R    ++ +   C        ++ +  +     +AK + + M  +   
Sbjct: 537 TCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGP 596

Query: 300 VVWNIMISA 308
            +W  +++ 
Sbjct: 597 PIWEALLAG 605


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/447 (38%), Positives = 254/447 (56%), Gaps = 42/447 (9%)

Query: 303 NIMISAYYQSGFPKESLELLMCMVR-------SGFR-ADLFTAIAAVSSISTMKNIEWGK 354
           N MI AY Q+   ++++E+ + M+R       +GF   D FT    + +   +     G+
Sbjct: 77  NAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGR 136

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD--------------------- 393
           Q+HA+V R+G +    V NSLI+MY  C DL+ ARK FD                     
Sbjct: 137 QVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMG 196

Query: 394 ----------SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
                     S+  KTVVSW++++ GY        A+ +F  M++EG E D V+I+ +LP
Sbjct: 197 QMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLP 256

Query: 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI 503
           AC  +GALE  ++++ Y  K G+     +  A+   YAKCGCIE A +LF    +  KD+
Sbjct: 257 ACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLF--HGMSEKDV 314

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           I+W++ I   A HG   +  +L+  M ++  V P+ ITF+GLL+AC +AGLV+EG     
Sbjct: 315 ISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLD 374

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
           +MKE YG EP  EHY  +V+LLGR+G +  A + ++ MP  PD ++WG LLSAC+ H + 
Sbjct: 375 QMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDV 434

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           E A + AE+L+ +EP + GN V+L+N+Y AAG+W  VA  R  +R R  +KTPGCS IE+
Sbjct: 435 ETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEV 494

Query: 683 GKLVHEFWAADQSHPQADAIYTILGIL 709
             +V EF A     P+   I T+L IL
Sbjct: 495 DNVVREFVAGQDLGPELGGIATVLDIL 521



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 187/438 (42%), Gaps = 46/438 (10%)

Query: 122 MALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181
           MA +S++  ED     +R+C+   D +   + H   V+L       V   +V        
Sbjct: 1   MAARSLWQLEDAIIARLRTCATFRDLL---RAHGLAVRLCLSQSSYVATQIVHICNAHGR 57

Query: 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRM----EGAEFDSG-- 234
                +   Q    +L    N++I    QN     + E++ +++R       A F  G  
Sbjct: 58  AAHAARVFAQIPAPNLHLH-NAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDR 116

Query: 235 -TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T   LL++   L +  LGR VH     S       V  +L+ MY++   L  A+  FD 
Sbjct: 117 FTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDG 176

Query: 294 MSDKDRVVWNIMISAYYQSG-----------FPKES--------------------LELL 322
           M +KD V WN +ISA+ + G            P ++                    +E+ 
Sbjct: 177 MREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVF 236

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
             M   GF  D  + +A + + + +  +E G+ ++A   ++G   +V + N+L++MY +C
Sbjct: 237 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKC 296

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINI 441
             +  A ++F  +  K V+SWS+ I G   H ++ EA+RLF  M  EG V  + +T + +
Sbjct: 297 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGL 356

Query: 442 LPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           L AC + G + E ++YL       G+         +     + G I+ A +      +  
Sbjct: 357 LSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPP 416

Query: 501 KDIITWNSMISAYAKHGD 518
              I W S++SA   HGD
Sbjct: 417 DGKI-WGSLLSACRSHGD 433



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 40/282 (14%)

Query: 87  VFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED--------TYPFVI 138
           VF  I +PN  L+  ++K  ++   +   + VY +M     +P+          TYPF++
Sbjct: 64  VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLK 198
           ++C  L     G ++HA V + G +S   V ++L+E Y +C       K     + KD+ 
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183

Query: 199 SRWNSLISLAVQNGKSEKSFEL-------------------------------FKLMRME 227
           S WN+LIS   + G+  ++ EL                               F+LM+ME
Sbjct: 184 S-WNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQME 242

Query: 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDA 287
           G E D  +++ +L +  +L +LELGR ++           + +  AL+ MY+K   +E+A
Sbjct: 243 GFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEA 302

Query: 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
             LF  MS+KD + W+  I      G  +E++ L   M R G
Sbjct: 303 LQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREG 344



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 60  GLHQNLILSSN-LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLV 118
           G+ +  ++S N LI ++A +G +  ++++F S+     + +  ++   +  G++   + V
Sbjct: 176 GMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEV 235

Query: 119 YKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIK 178
           ++ M ++   P + +   V+ +C+ L     G  I+A   K G      + +AL+E Y K
Sbjct: 236 FRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAK 295

Query: 179 CDGGFENE----KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
           C G  E       GM +   KD+ S W++ I     +G++ ++  LF++M  EG    +G
Sbjct: 296 C-GCIEEALQLFHGMSE---KDVIS-WSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNG 350

Query: 235 -TLINLL 240
            T + LL
Sbjct: 351 ITFVGLL 357


>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
          Length = 587

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 313/560 (55%), Gaps = 8/560 (1%)

Query: 150 GEKIHAQVVKLGFDSFDD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
           G  +HA  ++    ++ D  V  ALV  Y KC G   +          D+  R  S+++ 
Sbjct: 8   GRALHALAIR-SCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLR-TSMVTG 65

Query: 208 AVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             QN  + ++ E F + +  +G      TL++++ +  +LK +  G+  H   + ++F  
Sbjct: 66  YEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEY 125

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           DL +  A+L  Y ++ +++ A+ LF+ M++KD V W+ M++ Y QSG   E+L     MV
Sbjct: 126 DLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMV 185

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
            +G + +  T ++ V + S   +IE G+++H   ++ G + +++V  +L+DMY +C    
Sbjct: 186 EAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHE 245

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            A ++F  +  K  V+W+ +I G+  +    E++R+F  M   G   D VT++ +L AC 
Sbjct: 246 EAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACS 305

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
             G +     LHGY +  G      V  A+   Y+KCG +  A  +F  E    KD++ W
Sbjct: 306 ESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVF--ESAMEKDVVLW 363

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           +SMIS Y  HG   Q  +L+  M  S V+P+ +TF+ +L+AC ++GLV+EG+ IF+ M +
Sbjct: 364 SSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQ 423

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            YG  P+  H+++MV+LLGRAG + EA +L+     + DA  W  LL+AC+ H +TE++E
Sbjct: 424 VYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAACRAHHDTEMSE 482

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           + A KL+ ++P++AG Y LL+NIY     W+   + R  +RDRGL K PGCS +E+  ++
Sbjct: 483 VVAAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVELNNVM 542

Query: 687 HEFWAADQSHPQADAIYTIL 706
           H F A ++ H   + I  +L
Sbjct: 543 HTFTAGERPHKDWEKISRLL 562



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/507 (24%), Positives = 249/507 (49%), Gaps = 19/507 (3%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           H + +HA  I     + +  +++ L+  YA    +  S   +N+ + P+ +L  +++   
Sbjct: 7   HGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGY 66

Query: 107 SKFGEYEKTLLVY-KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            +     + L  + + +  Q   P+  T   VI + + L D ++G+  HA V++  F+  
Sbjct: 67  EQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYD 126

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             + +A++ FY++  G  +  + + +   +     W+ +++  VQ+G   ++   +K M 
Sbjct: 127 LVLVNAILGFYMRI-GAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMV 185

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G + ++ T+++++++      +E GR VH +AV      +++V TAL+ MY K +  E
Sbjct: 186 EAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHE 245

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           +A  LF +MS KD V W ++IS + Q+G P ES+ +  CM+  G   D  T +  +++ S
Sbjct: 246 EAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACS 305

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
               +     +H  ++  G   ++ V  +L+D+Y +C +L CA ++F+S   K VV WSS
Sbjct: 306 ESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSS 365

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           MI GY  H    +A+ LF  M    V+ + +T +++L AC + G ++  K +        
Sbjct: 366 MISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRI-------- 417

Query: 466 LNSLSSVNTAIFISYAKCGCIEM---AGELFDEEKI----DSKDIITWNSMISAYAKHGD 518
             S++ V   +  +      +++   AGEL +  K+       D  TW ++++A   H D
Sbjct: 418 FESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNGRADAHTWCALLAACRAHHD 477

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLL 545
                 +  ++ + D  PD   +  LL
Sbjct: 478 TEMSEVVAAKLLKLD--PDHAGYYNLL 502


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 312/570 (54%), Gaps = 9/570 (1%)

Query: 150 GEKIHAQVVKL---GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
           G   HAQ++K     F +F  + + LV  Y K D    + K +++         W +LI+
Sbjct: 25  GRAAHAQILKTLKTPFPAF--LYNHLVNMYAKLDH-LNSAKLILELAPCRSVVTWTALIA 81

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            +VQNG    +   F  M  +    +  T   +L+++  L+    G+ +H +AV      
Sbjct: 82  GSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLIN 141

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+ V  ++  MYSKL  L DA  +FD+M  ++   WN  IS     G P++S+   + ++
Sbjct: 142 DVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELL 201

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           R G + D  T  A +++ S    +  G Q+H  ++R+G    VSV N LID Y +C ++ 
Sbjct: 202 RVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVE 261

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
           C+  +FD +  +  VSWSS+I  YV +++  +A  LF   + E +E     + ++L AC 
Sbjct: 262 CSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACA 321

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +  +E  + +   ++K  +     V +A+   Y KCG I+ A + F+   +  +++++W
Sbjct: 322 GLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFN--AMPERNLVSW 379

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           N+++  YA  G  ++   L  +M  +  + P  ++ +  L+AC  AG ++ G  IF+ MK
Sbjct: 380 NALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMK 439

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           E YG EP  EHYA +V+LLGRAG ++ A + +K MPF P   +WG LL AC+MH + EL 
Sbjct: 440 ERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELG 499

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           +L AEKL  ++P+++GN+V+LSN++AA G+W  V  +R  +++ G+KK  G SWI +   
Sbjct: 500 KLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSR 559

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME 715
           +H F A D+SH +   I  ILG L  E+ +
Sbjct: 560 IHMFQAKDKSHEKDPEIQDILGKLRKEMQD 589



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 219/457 (47%), Gaps = 12/457 (2%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           L ++L++ YA L  L+ ++ +       + + +  ++    + G +   LL +  M    
Sbjct: 44  LYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDC 103

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           + P + T+P V+++ + L    +G+++HA  VK G  +   VG ++ + Y K   GF N+
Sbjct: 104 VRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKL--GFLND 161

Query: 187 KGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
                + F ++  R    WN+ IS +V +G+ E S   F  +   G + DS T    L +
Sbjct: 162 A---YKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNA 218

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             +   L  G  +H   + S + +++SV+  L+  Y K   +E ++M+FD+M +++ V W
Sbjct: 219 CSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSW 278

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           + +I+AY Q+   +++  L +   +       F   + + + + +  IE+G+ + A  ++
Sbjct: 279 SSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVK 338

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
              +  + V ++L+DMY +C  ++ A + F+++  + +VSW++++ GY     + +A+ L
Sbjct: 339 ACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVAL 398

Query: 423 FSEM-KLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISY 480
             EM    G+   +V++I  L AC   G L+  +K       + G+         +    
Sbjct: 399 LEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLL 458

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
            + G +E A +           I  W +++ A   HG
Sbjct: 459 GRAGMVECAYDFIKRMPF-PPTISIWGALLGACRMHG 494



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 181/382 (47%), Gaps = 9/382 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA   +  GL  ++ +  ++ D Y+ LG L+ + +VF+ +   N   +   + N   
Sbjct: 128 KQLHA-LAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVL 186

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E +++ + ++      P   T+   + +CS  L    G ++H  +++ G+     V
Sbjct: 187 HGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSV 246

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            + L++FY KC G  E  + +  R  +     W+SLI+  VQN + EK+  LF   R E 
Sbjct: 247 SNGLIDFYGKC-GEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKED 305

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            E     + ++L +   L  +E GR V  +AV +   +++ V +AL+ MY K  S+++A+
Sbjct: 306 IEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAE 365

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRADLFTAIAAVSSISTM 347
             F+ M +++ V WN ++  Y   G   +++ LL  M   +G      + I A+S+ S  
Sbjct: 366 QAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRA 425

Query: 348 KNIEWGKQMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSS 405
            +++ G ++  ++  R G +     +  L+D+      + CA      +     +S W +
Sbjct: 426 GDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGA 485

Query: 406 MIKGYVTHDQS----LEALRLF 423
           ++     H +     L A +LF
Sbjct: 486 LLGACRMHGKPELGKLAAEKLF 507



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           + LN C +   L    Q+H  +II  G  QN+ +S+ LID Y   G +  S+ VF+ +  
Sbjct: 214 AFLNACSDKLGLGPGCQLHG-FIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGE 272

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            NS+ + +++    +  E EK   ++ +   + + P +     V+ +C+ L +   G  +
Sbjct: 273 RNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSV 332

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
            A  VK   +    V  ALV+ Y KC G  +N     ++ F  +  R    WN+L+    
Sbjct: 333 QALAVKACVEQNIFVASALVDMYGKC-GSIDNA----EQAFNAMPERNLVSWNALLGGYA 387

Query: 210 QNGKSEKSFELFKLM 224
             G + K+  L + M
Sbjct: 388 HQGHANKAVALLEEM 402


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 301/525 (57%), Gaps = 15/525 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N++I+  V NG +   F+ +K MR  G   D  T   ++R+  E   +   R +H    
Sbjct: 45  YNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTFPCVVRACCEFMEV---RKIHGCLF 101

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 ++ V +AL++ Y K+   EDA+ +F+++ ++D V+WN MI+ Y + G   +++ 
Sbjct: 102 KMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVV 161

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           +   M   G     FT  + +S +++M +I  G+ +H  V + G    V+V N+LIDMY 
Sbjct: 162 VFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYG 221

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C+    A  IF+ +  K + SW+S+I  +   D     LRLF +M    V  D +TI  
Sbjct: 222 KCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITA 281

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSS-----VNTAIFISYAKCGCIEMAGELFDE 495
           +LPAC ++ AL H + +HGY +  GL    +     +N AI   YAKCGC++ A  +FD 
Sbjct: 282 VLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDL 341

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
            +  +KD+ +WN MI  YA HG  ++   ++ +M ++ ++PD++TF+G+L+AC +AG V 
Sbjct: 342 MR--NKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVH 399

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +GR     M+  +G  P+ EHY  ++++LGRAGH+ EA +L + +P + +  +W  LL A
Sbjct: 400 QGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGA 459

Query: 616 CKMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673
           C++H   EL  +  EK+  +EP++  +G+Y+L+S++Y   G++    ++R  ++++ +KK
Sbjct: 460 CRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKK 519

Query: 674 TPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL---GILELEIME 715
           TPGCSWIE+   ++ F   D++H + +A+   L   G    E+M 
Sbjct: 520 TPGCSWIELKDGLYVFSMGDRTHHELNALINCLCGFGYFHDEVMH 564



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/542 (26%), Positives = 242/542 (44%), Gaps = 53/542 (9%)

Query: 69  SNLIDSYANLGLLSLSQQVF-NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127
           ++LI+ Y+    +  +  VF +     N   Y  I+      G        YK+M    +
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 128 YPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
            P + T+P V+R+C    +F+   KIH  + K+G +    VG ALV  Y+K DG  + EK
Sbjct: 74  MPDKFTFPCVVRACC---EFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
                 F++L  R    WN++I+   + G   K+  +FK M  EG      T  ++L   
Sbjct: 131 -----VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSIL 185

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
             +  +  GR +H +     +   ++V+ AL+ MY K    EDA M+F+ +++KD   WN
Sbjct: 186 TSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWN 245

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            +ISA+ Q      +L L   M+ S    D+ T  A + + S +  +  G+++H  ++ N
Sbjct: 246 SIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVN 305

Query: 364 G-----SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418
           G     +   V ++N+++DMY +C  +  A  IFD ++ K V SW+ MI GY  H    E
Sbjct: 306 GLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTE 365

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL +F  M    ++ D VT + +L AC       H  ++H            S  T + +
Sbjct: 366 ALDMFHRMCEAQIKPDVVTFVGVLSAC------SHAGFVH---------QGRSFLTRMEL 410

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            +     IE                  +  +I    + G   + + L  ++   D   +L
Sbjct: 411 EFGVIPTIE-----------------HYTCIIDMLGRAGHLGEAYDLAQRIPLED---NL 450

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           I ++ LL AC   G  E G ++ +++ +          Y  M +L G  G  +EA E+ +
Sbjct: 451 ILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRR 510

Query: 599 DM 600
            M
Sbjct: 511 TM 512



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 178/366 (48%), Gaps = 11/366 (3%)

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLF-DKMSDKDRVVWNIMISAYYQSGFPKES 318
           V S F    S  T+L++MYS+   +E+A ++F D   +++   +N +I+ +  +G   + 
Sbjct: 2   VTSGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADG 61

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
            +    M   G   D FT    V +      +   +++H  + + G +  V V ++L++ 
Sbjct: 62  FQFYKRMRSVGVMPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNT 118

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y + +    A K+F+ +  + VV W++MI GY       +A+ +F  M  EG+ +   T 
Sbjct: 119 YLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTT 178

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
            +IL    ++G + + + +HG   K+G +S  +V+ A+   Y KC   E A  +F  E I
Sbjct: 179 TSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIF--EMI 236

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
           + KD+ +WNS+ISA+ +  D     +L+ +M  S V PD+IT   +L AC +   +  GR
Sbjct: 237 NEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGR 296

Query: 559 IIFKEM-KESYGYEPSQEHY---ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            I   M     G   + +      +++++  + G M  A +++ D+    D   W  ++ 
Sbjct: 297 EIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNA-DIIFDLMRNKDVASWNIMIM 355

Query: 615 ACKMHS 620
              MH 
Sbjct: 356 GYAMHG 361



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 159/328 (48%), Gaps = 13/328 (3%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  N+ + S L+++Y  +     +++VF  +   + +L+  ++   +K G   K ++V+
Sbjct: 104 GLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVF 163

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           K+M  + +  +  T   ++   + + D  +G  IH  V K+G+ S   V +AL++ Y KC
Sbjct: 164 KRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKC 223

Query: 180 DGGFENEKGMIQRKF---KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL 236
                 E  ++  +    KDL S WNS+IS   Q    + +  LF  M       D  T+
Sbjct: 224 K---HTEDALMIFEMINEKDLFS-WNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITI 279

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCK-----DLSVNTALLSMYSKLASLEDAKMLF 291
             +L +   L +L  GR +H   +V+   K     D+ +N A++ MY+K   +++A ++F
Sbjct: 280 TAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIF 339

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           D M +KD   WNIMI  Y   G+  E+L++   M  +  + D+ T +  +S+ S    + 
Sbjct: 340 DLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVH 399

Query: 352 WGKQMHANV-LRNGSDYQVSVHNSLIDM 378
            G+     + L  G    +  +  +IDM
Sbjct: 400 QGRSFLTRMELEFGVIPTIEHYTCIIDM 427



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 121/253 (47%), Gaps = 11/253 (4%)

Query: 374 SLIDMYCECEDLNCARKIF-DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           SLI+MY  C  +  A  +F D    + V +++++I G+V +  + +  + +  M+  GV 
Sbjct: 15  SLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVM 74

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D  T   ++ AC        V+ +HG   K+GL     V +A+  +Y K    E A ++
Sbjct: 75  PDKFTFPCVVRACCE---FMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKV 131

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F+E  +  +D++ WN+MI+ Y K G  ++   ++ +M +  +     T   +L+   + G
Sbjct: 132 FEE--LPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMG 189

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
            +  GR I   +    GY        +++++ G+  H ++A  ++ +M  + D   W  +
Sbjct: 190 DINNGRAI-HGIVTKMGYSSCVAVSNALIDMYGKCKHTEDAL-MIFEMINEKDLFSWNSI 247

Query: 613 LSA---CKMHSET 622
           +SA   C  H  T
Sbjct: 248 ISAHEQCDDHDGT 260


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 189/578 (32%), Positives = 297/578 (51%), Gaps = 75/578 (12%)

Query: 202 NSLISLAVQNGKSEKSFELFK--LMRMEGAEFDSGTLINLLRSTVELKSLELGRI--VHC 257
           N++IS   +   +  +  +F+  L   +    D  +  +LL +  ++  L +     +HC
Sbjct: 126 NAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHC 185

Query: 258 VAVVSDFCKDLSVNTALLSMYSKLAS---LEDAKMLFDKMSDKDR--------------- 299
                     LSV+ AL+++Y K  +     DA+ + D+M +KD                
Sbjct: 186 AVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGD 245

Query: 300 ----------------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
                           VVWN MIS Y QSG   E+ EL   MV      D FT  + +S+
Sbjct: 246 VHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSA 305

Query: 344 ISTMKNIEWGKQMHANVLRNGSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            +       GK +H   +R   D+     + V+N+L+ +Y +   +  A KIFDS+  K 
Sbjct: 306 CANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKD 365

Query: 400 VVSWSS-------------------------------MIKGYVTHDQSLEALRLFSEMKL 428
           VVSW++                               M+ GYV    + +AL+LF++M+ 
Sbjct: 366 VVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS 425

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
           E V+    T    + AC  +GAL+H K LH + ++ G  + +S   A+   YA+CG ++ 
Sbjct: 426 EDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKD 485

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
           A  +F    + + D ++WN+MISA  +HG   +  +L+ QM    + PD I+FL +LTAC
Sbjct: 486 ARLVF--LVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTAC 543

Query: 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV 608
            +AGLV++G   F+ M+  +G  P ++HYA +++LLGRAG + EAR+L+K MPF+P   +
Sbjct: 544 NHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAI 603

Query: 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
           W  +LS C+++ + EL    A++L  M PE+ G Y+LLSN Y+AAG+W   A++R  +RD
Sbjct: 604 WEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRD 663

Query: 669 RGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           RG+KK PGCSWIE+G  VH F   D  HP A  +Y  L
Sbjct: 664 RGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFL 701



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/528 (22%), Positives = 222/528 (42%), Gaps = 76/528 (14%)

Query: 66  ILSSNLIDSYANLGLLSLSQQVFNSI--TSPNSLLYGTILKNLSKFGEYEKTLLVYKQM- 122
           + +++L+ +YA  G L  S   F+S+     +++L+  ++   ++       + V++ + 
Sbjct: 90  VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149

Query: 123 -ALQSMYPAEDTYPFVIRSCSCLLDFISGE--KIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            +  S+ P + ++  ++ +   + D       ++H  V KLG  +   V +AL+  Y+KC
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209

Query: 180 D---------------------------------GGFENEKGMIQRKFKDLKSRWNSLIS 206
           D                                 G     +   +    +    WN++IS
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS 269

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC--VAVVSDF 264
             VQ+G   ++FELF+ M  +    D  T  +LL +         G+ VH   + +  DF
Sbjct: 270 GYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDF 329

Query: 265 CKD--LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN------------------- 303
             +  L VN AL+++YSK   +  A  +FD M+ KD V WN                   
Sbjct: 330 VPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIF 389

Query: 304 ------------IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
                       +M+S Y   G  +++L+L   M     +   +T   AV++   +  ++
Sbjct: 390 KEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALK 449

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GKQ+HA++++ G +   S  N+L+ MY  C  +  AR +F  +     VSW++MI    
Sbjct: 450 HGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALG 509

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLS 470
            H    EAL LF +M  +G+  D ++ + IL AC + G ++   +Y        G++   
Sbjct: 510 QHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGE 569

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                +     + G I  A +L      +    I W +++S    +GD
Sbjct: 570 DHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAI-WEAILSGCRINGD 616



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 40/242 (16%)

Query: 37  SLLNLCENPQ---HLQQIHARYIILHG---LHQNLILSSNLIDSYANLGLLSLSQQVFNS 90
           SLL+ C N     H + +H ++I L         L +++ L+  Y+  G ++++ ++F+S
Sbjct: 301 SLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDS 360

Query: 91  IT-----SPNSLLYGTI----LKNLSKF----------------------GEYEKTLLVY 119
           +T     S N++L G I    L N ++                       G  E  L ++
Sbjct: 361 MTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLF 420

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
            QM  + + P + TY   + +C  L     G+++HA +V+ GF++ +  G+AL+  Y +C
Sbjct: 421 NQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARC 480

Query: 180 DGGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238
             G   +  ++     ++ S  WN++IS   Q+G   ++ ELF  M  +G   D  + + 
Sbjct: 481 --GAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLT 538

Query: 239 LL 240
           +L
Sbjct: 539 IL 540



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 12/121 (9%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
           +H +Q+HA +++  G   +    + L+  YA  G +  ++ VF  + + +S+ +  ++  
Sbjct: 449 KHGKQLHA-HLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           L + G   + L ++ QM  Q +YP   ++  ++ +C+           HA +V  GF  F
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACN-----------HAGLVDDGFQYF 556

Query: 166 D 166
           +
Sbjct: 557 E 557


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 193/589 (32%), Positives = 302/589 (51%), Gaps = 78/589 (13%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVA 259
           +N++I+    N     + ELF  M+ +    D+ T  ++L +   +   E   + +HC  
Sbjct: 115 YNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAV 174

Query: 260 VVSDFCKDLSVNTALLSMYSKLAS---------LEDAKMLFDKMSDKDR----------- 299
           V S      SV  AL+S Y K A+         + +A+ LFD+M ++D            
Sbjct: 175 VKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYV 234

Query: 300 --------------------VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
                               V WN MIS Y   G   E+ E+   M+ S  + D FT  +
Sbjct: 235 KNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTS 294

Query: 340 AVSSISTMKNIEWGKQMHANVLRN----GSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
            +S  +       GK+MHA  L+       D  + V+N+LI  Y +C  ++ A++IF+ +
Sbjct: 295 VISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKM 354

Query: 396 KTKTVVSWSSMIKGYVT---HDQSL----------------------------EALRLFS 424
             + +VSW+ ++ GYV     D++                             EAL+ F+
Sbjct: 355 PERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFN 414

Query: 425 EMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
            MKL+G E         + +C  +G+L+H + LH   ++ G  S  S   A+   YA+CG
Sbjct: 415 RMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCG 474

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            ++ A  LF    +   D I+WN+MI+A  +HG  +Q  +L+ +M +  + PD I+FL +
Sbjct: 475 VVDAAHCLFI--NMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTV 532

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           ++AC +AGLV+EGR  F  M   YG  P +EHYA +++LL RAG   EA+E+++ MPF+P
Sbjct: 533 ISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEP 592

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
            A +W  LL+ C++H   +L    AE+L  ++P++ G YVLLSN+YA AG+WN +AK+R 
Sbjct: 593 GAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRK 652

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
            +RDRG+KK PGCSWIE+   VH F   D +HP+   IY  L  L LE+
Sbjct: 653 LMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEM 701



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/545 (22%), Positives = 231/545 (42%), Gaps = 79/545 (14%)

Query: 52  HARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNS--ITSPNSLLYGTILKNLSKF 109
           +ARY+       +++  + LI +Y+  G L LS+++F+   +   +S+ Y  ++   S  
Sbjct: 66  YARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHN 125

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG-EKIHAQVVKLGFDSFDDV 168
            +    + ++  M   +  P   T+  V+ + + + +     +++H  VVK G      V
Sbjct: 126 HDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSV 185

Query: 169 GDALVEFYIKC---------------------------------------DGGFENEKGM 189
            +AL+  Y+KC                                       +   +  K  
Sbjct: 186 LNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEF 245

Query: 190 IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249
           +    K L   WN++IS     G   ++FE+F+ M M   + D  T  +++         
Sbjct: 246 LNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCF 305

Query: 250 ELGRIVHC--VAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
            LG+ +H   +  V++   D++  VN AL++ Y K   ++ A+ +F+KM ++D V WNI+
Sbjct: 306 RLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNII 365

Query: 306 ISAYY-------------------------------QSGFPKESLELLMCMVRSGFRADL 334
           +S Y                                Q GF +E+L+    M   GF    
Sbjct: 366 LSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCD 425

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           +    A+ S S + +++ G+Q+HA V+R G +  +S  N+LI MY  C  ++ A  +F +
Sbjct: 426 YAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFIN 485

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EH 453
           +     +SW++MI     H Q  +A+ LF EM  EG+  D ++ + ++ AC + G + E 
Sbjct: 486 MPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEG 545

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            KY        G+N        I     + G    A E+ +    +    I W ++++  
Sbjct: 546 RKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPI-WEALLAGC 604

Query: 514 AKHGD 518
             HG+
Sbjct: 605 RIHGN 609



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 209/517 (40%), Gaps = 113/517 (21%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           +R     + S   I  L+S +   S  L R VH   + S F     +   L+ +YSK + 
Sbjct: 7   IRTAANRYGSLLQICCLQSPI---SYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSK 63

Query: 284 LEDAKMLFDKMSD---------------------------------KDRVVWNIMISAYY 310
           L  A+ LFD++                                   +D V +N MI+AY 
Sbjct: 64  LNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYS 123

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE-WGKQMHANVLRNGSDYQV 369
            +     ++EL   M R  FR D +T  + + +++ +   E   +Q+H  V+++G+ +  
Sbjct: 124 HNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVT 183

Query: 370 SVHNSLIDMYCEC----------------------------------------EDLNCAR 389
           SV N+LI  Y +C                                         DL+ A+
Sbjct: 184 SVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAK 243

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           +  +    K  V+W++MI GY      LEA  +F +M +  +++D  T  +++  C N G
Sbjct: 244 EFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAG 303

Query: 450 ALEHVKYLHGYSMKLGLNSLSS----VNTAIFISYAKCGCIEMAGELF------------ 493
                K +H Y +K   N        VN A+   Y KCG +++A E+F            
Sbjct: 304 CFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWN 363

Query: 494 ------------DEEK-----IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536
                       DE K     +  K+I++W  MIS  A+ G   +  K + +MK     P
Sbjct: 364 IILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEP 423

Query: 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAREL 596
               F G + +C   G ++ GR +  ++   YGYE S     +++ +  R G +D A  L
Sbjct: 424 CDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCL 482

Query: 597 VKDMPFKPDARVWGPLLSACKMHSE-TELAELTAEKL 632
             +MP   DA  W  +++A   H + T+  EL  E L
Sbjct: 483 FINMPCV-DAISWNAMIAALGQHGQGTQAIELFEEML 518



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 173/409 (42%), Gaps = 61/409 (14%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + +I  Y     L  +++  N  +    + +  ++   +  G Y +   ++++M +  + 
Sbjct: 227 TTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQ 286

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG----DALVEFYIKCD---- 180
             E T+  VI  C+    F  G+++HA  +K   +   DV     +AL+ FY KC     
Sbjct: 287 LDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDI 346

Query: 181 --------------------GGFENEKGMIQRK--FKDLKSR----WNSLISLAVQNGKS 214
                                G+ N + M + K  F ++  +    W  +IS   Q G +
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFA 406

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           E++ + F  M+++G E         + S   L SL+ GR +H   V   +   LS   AL
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNAL 466

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY++   ++ A  LF  M   D + WN MI+A  Q G   +++EL   M++ G   D 
Sbjct: 467 ITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDR 526

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN------------SLIDMYCEC 382
            + +  +S+ S           HA +++ G  Y  S+HN             +ID+ C  
Sbjct: 527 ISFLTVISACS-----------HAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRA 575

Query: 383 EDLNCARKIFDSVKTKTVVS-WSSMIKGYVTH---DQSLEALRLFSEMK 427
              + A+++ +S+  +     W +++ G   H   D  +EA     E+K
Sbjct: 576 GKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELK 624


>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 729

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/623 (30%), Positives = 325/623 (52%), Gaps = 9/623 (1%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G++Q + + ++LID Y  LG  S ++ +F+ ++  + + +  ++   S+ G     + ++
Sbjct: 86  GVNQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLF 145

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
             M  ++  P + T   ++ SC C      G  IH   +K GF     + +AL+  Y KC
Sbjct: 146 VDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKC 205

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           D   E  + +     +     WN++I +  QNG  +K+   FK M  EG    S T++NL
Sbjct: 206 DD-LEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNL 264

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           + +    ++      VHC  V   F  D SV T+L+ +Y+K      AK L+     KD 
Sbjct: 265 VSANAFPEN------VHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDL 318

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           +    +IS+Y + G  + ++E  +  ++   + D    I  +  I+   +   G   H  
Sbjct: 319 ITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGY 378

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
            +++G      V N LI +Y   +++  A  +F  ++ K +++W+SMI G V   +S +A
Sbjct: 379 GVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDA 438

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + LFSEM + G + D +TI ++L  C  +G L   + LH Y ++  +     + TA+   
Sbjct: 439 MELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDM 498

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y+KCG ++ A ++F    I    + TWN++IS Y+ +G     F  Y+++++  ++PD I
Sbjct: 499 YSKCGRLDYAEKVF--YNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKI 556

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TFLG+L AC + GLV  G   F  M + YG  PS +HYA +V LLG+ G   EA E +  
Sbjct: 557 TFLGVLAACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINK 616

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
           M  +PD+ VWG LL+AC +  E +L E  A+KL  +  +N G YVL+SN+YA  G+W+ V
Sbjct: 617 MEIQPDSAVWGALLNACCIQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDV 676

Query: 660 AKMRTFLRDRGLKKTPGCSWIEI 682
           A++R  ++D G     G S I++
Sbjct: 677 ARVREMMKDSGGDGCSGVSVIDV 699



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 141/542 (26%), Positives = 252/542 (46%), Gaps = 29/542 (5%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140
           LSL   +F + TSP  +++  IL+      E+  +LL+   ++  S      T     R 
Sbjct: 18  LSLFHSLFQNATSPALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQAR- 76

Query: 141 CSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKS 199
                      +I  Q +K G + F  V  +L++ Y+K  G   + + M  Q  ++D+ S
Sbjct: 77  -----------QIQTQCLKRGVNQFIHVHTSLIDLYMKL-GFTSHARNMFDQMSYRDVVS 124

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
            WN LI    QNG    + +LF  M  E  + +  T+++LL S    + +  GR +H   
Sbjct: 125 -WNVLICGYSQNGYLYHAIQLFVDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFG 183

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
           + + F  D  +N AL+SMY+K   LE +++LFD+M +K  V WN MI  Y Q+G   +++
Sbjct: 184 IKAGFGLDSHLNNALMSMYAKCDDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAI 243

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
                M++ GF     T +  VS+ +  +N+      H  V++ G     SV  SL+ +Y
Sbjct: 244 LYFKEMLKEGFHPSSVTIMNLVSANAFPENV------HCYVVKCGFTNDASVVTSLVCLY 297

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +    N A++++    TK +++ +++I  Y        A+  F +     ++ D V +I
Sbjct: 298 AKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALI 357

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            +L    N          HGY +K GL++   V   +   Y++   IE A  LF + +  
Sbjct: 358 GVLHGITNPSHFAIGCTFHGYGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMR-- 415

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            K +ITWNSMIS   + G  S   +L+++M     +PD IT   LL+ C   G +  G  
Sbjct: 416 EKPLITWNSMISGCVQAGKSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGET 475

Query: 560 IFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           +   +  +       E +   +++++  + G +D A ++  ++   P    W  ++S   
Sbjct: 476 LHSYILRN---NVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIK-DPCLATWNAIISGYS 531

Query: 618 MH 619
           ++
Sbjct: 532 LY 533



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 142/315 (45%), Gaps = 10/315 (3%)

Query: 35  SFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
           S +++NL       + +H  Y++  G   +  + ++L+  YA  G  + ++Q++    + 
Sbjct: 258 SVTIMNLVSANAFPENVHC-YVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTK 316

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + +    I+ + S+ G+ E  +  + Q     + P       V+   +    F  G   H
Sbjct: 317 DLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFH 376

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
              VK G  +   V + L+  Y + D   E E  +    F D++ +    WNS+IS  VQ
Sbjct: 377 GYGVKSGLSNDCLVANGLISLYSRFD---EIEAAL--SLFYDMREKPLITWNSMISGCVQ 431

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            GKS  + ELF  M M G + D+ T+ +LL    +L +L +G  +H   + ++   +  +
Sbjct: 432 AGKSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFI 491

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            TAL+ MYSK   L+ A+ +F  + D     WN +IS Y   G    +      +   G 
Sbjct: 492 GTALIDMYSKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGL 551

Query: 331 RADLFTAIAAVSSIS 345
           + D  T +  +++ +
Sbjct: 552 KPDKITFLGVLAACT 566



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/270 (19%), Positives = 112/270 (41%), Gaps = 7/270 (2%)

Query: 44  NPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYG 100
           NP H       H  Y +  GL  + ++++ LI  Y+    +  +  +F  +     + + 
Sbjct: 365 NPSHFAIGCTFHG-YGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWN 423

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           +++    + G+    + ++ +M++    P   T   ++  C  L +   GE +H+ +++ 
Sbjct: 424 SMISGCVQAGKSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRN 483

Query: 161 GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
                D +G AL++ Y KC      EK     K   L + WN++IS     G    +F  
Sbjct: 484 NVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIKDPCLAT-WNAIISGYSLYGLEHTAFGC 542

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYS 279
           +  ++ +G + D  T + +L +      + LG    + +         L     ++++  
Sbjct: 543 YSKLQEQGLKPDKITFLGVLAACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLG 602

Query: 280 KLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
           K    ++A    +KM    D  VW  +++A
Sbjct: 603 KEGLFKEAIEFINKMEIQPDSAVWGALLNA 632


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/507 (35%), Positives = 284/507 (56%), Gaps = 46/507 (9%)

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           ++ VELKS      +H   +     +   + T ++ +  K   L  A +LF ++ + +  
Sbjct: 25  KNIVELKS------IHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGY 78

Query: 301 VWNIMISAYYQSG-------FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           ++N MI A+  +        F KE L L      +    D FT    + S S +     G
Sbjct: 79  LYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLG 138

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV------------------ 395
           KQ+HA++ + G    +++ N+LIDMY +C  L  A K+FD +                  
Sbjct: 139 KQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGV 198

Query: 396 -------------KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
                          +T+VSW++MI GY       +AL +F +M++ GVE D ++II++L
Sbjct: 199 GQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVL 258

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
           PAC  +GALE  K++H Y  + GL   +S+  A+   Y+KCGCI  A +LFD+  +   D
Sbjct: 259 PACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQ--MSKGD 316

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           +I+W++MI   A HG   +  +L+ +MK++ + P+ ITFLGLL+AC +AG   EG   F 
Sbjct: 317 VISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFD 376

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M + Y  EP  EHY  +V++LGRAG + +A ++++ MP KPD+++WG LLS+C+ HS  
Sbjct: 377 SMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNL 436

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           ++A +  E L  +EP++ GNYVLLSNIYA   KW+GV++MR  ++ + +KKTPG S I+I
Sbjct: 437 DIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDI 496

Query: 683 GKLVHEFWAADQSHPQADAIYTILGIL 709
             +V EF + D S P +  I+ +L +L
Sbjct: 497 NNVVQEFVSWDDSKPFSRDIFWLLELL 523



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 163/347 (46%), Gaps = 46/347 (13%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           +L  C+N   L+ IHA ++I + L Q+  L + ++D       L  +  +F  +  PN  
Sbjct: 20  ILQNCKNIVELKSIHA-HVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGY 78

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQM-------ALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           LY  +++  +    Y   +L YK+M       +   ++P   T+PFVI+SCS L+ +  G
Sbjct: 79  LYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLG 138

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISL 207
           +++HA + K G  S   + +AL++ Y KC    +  K   GM++R        WNS+IS 
Sbjct: 139 KQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERD----AISWNSIISG 194

Query: 208 AVQNGKSEKSFELFKL-------------------------------MRMEGAEFDSGTL 236
            V  G+  K+  LF L                               M++ G E D  ++
Sbjct: 195 HVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISI 254

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296
           I++L +  +L +LE+G+ +H     +   +  S+  AL+ MYSK   +  A  LFD+MS 
Sbjct: 255 ISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSK 314

Query: 297 KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
            D + W+ MI      G  +E++EL   M ++    +  T +  +S+
Sbjct: 315 GDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSA 361



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 48/370 (12%)

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           V  +   KNI   K +HA+V++        +   ++D+  + EDL  A  +F  VK    
Sbjct: 18  VPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNG 77

Query: 401 VSWSSMIKGYVTHDQSL--------EALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
             +++MI+ + TH++          E LRL        +  D  T   ++ +C  +    
Sbjct: 78  YLYNAMIRAH-THNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYN 136

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKC----------------------------- 483
             K +H +  K G  S  ++  A+   Y KC                             
Sbjct: 137 LGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHV 196

Query: 484 --GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541
             G +  AG LFD   +  + I++W +MIS Y + G ++    ++ QM+   V PD I+ 
Sbjct: 197 GVGQMRKAGALFD--LMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISI 254

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           + +L AC   G +E G+ I      + G         +++ +  + G + +A +L   M 
Sbjct: 255 ISVLPACAQLGALEVGKWIHMYCDRN-GLLRKTSICNALMEMYSKCGCIGQAYQLFDQMS 313

Query: 602 FKPDARVWGPLLSACKMHSET-ELAELTAE-KLISMEPENAGNYVLLSNIYAAAGKWN-G 658
            K D   W  ++     H +  E  EL    K   +EP N   ++ L +  A AG WN G
Sbjct: 314 -KGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEP-NGITFLGLLSACAHAGFWNEG 371

Query: 659 VAKMRTFLRD 668
           +A   +  +D
Sbjct: 372 LAYFDSMSKD 381



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 45/298 (15%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-----SPNSLLYGTI- 102
           +Q+HA ++   G   N+ + + LID Y     L  + +VF+ +      S NS++ G + 
Sbjct: 139 KQVHA-HLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVG 197

Query: 103 -------------------------LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFV 137
                                    +   ++ G Y   L V++QM +  + P E +   V
Sbjct: 198 VGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISV 257

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           + +C+ L     G+ IH    + G      + +AL+E Y KC G       +  +  K  
Sbjct: 258 LPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKC-GCIGQAYQLFDQMSKGD 316

Query: 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257
              W+++I     +GK+ ++ ELFK M+    E +  T + LL +         G     
Sbjct: 317 VISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEG----- 371

Query: 258 VAVVSDFCKDLSVNT------ALLSMYSKLASLEDAKMLFDKMSDK-DRVVWNIMISA 308
           +A      KD  +         L+ +  +   L  A  + +KM  K D  +W  ++S+
Sbjct: 372 LAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSS 429


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 282/481 (58%), Gaps = 4/481 (0%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M + G + +      +L   +  +++  G+ VH   + + +   + + T L+  Y K  S
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           L DA+ +FD M +++ V W  MISAY Q G+  ++L L + M+RSG   + FT    ++S
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
                    G+Q+H+++++   +  V V +SL+DMY +   ++ AR IF  +  + VVS 
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSC 228

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I GY       EAL LF  ++ EG++ ++VT  ++L A   + AL+H K +H + ++
Sbjct: 229 TAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLR 288

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             + S   +  ++   Y+KCG +  A  +FD   +  + +I+WN+M+  Y+KHG+  +  
Sbjct: 289 SEVPSYVVLQNSLIDMYSKCGNLTYARRIFD--TLHERTVISWNAMLVGYSKHGEGREVL 346

Query: 524 KLYTQM-KQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES-YGYEPSQEHYASMV 581
           +L+  M  ++ V+PD +T L +L+ C + GL ++G  IF +M       +P  +HY  +V
Sbjct: 347 ELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVV 406

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           ++LGRAG ++ A E VK MPF+P A +WG LL AC +HS  ++ E    +L+ +EPENAG
Sbjct: 407 DMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAG 466

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
           NYV+LSN+YA+AG+W  V  +R  +  + + K PG SWIE+ +++H F A+D SHP+ + 
Sbjct: 467 NYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREE 526

Query: 702 I 702
           +
Sbjct: 527 V 527



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 200/402 (49%), Gaps = 7/402 (1%)

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
            MAL+ +      Y  V+  C        G+++HA ++K  +     +   L+ FY+KCD
Sbjct: 48  HMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCD 107

Query: 181 GGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
              +          +++ S W ++IS   Q G + ++  LF  M   G E +  T   +L
Sbjct: 108 SLRDARHVFDVMPERNVVS-WTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVL 166

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            S +      LGR +H   +  ++   + V ++LL MY+K   + +A+ +F  + ++D V
Sbjct: 167 TSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
               +IS Y Q G  +E+LEL   + R G +++  T  + ++++S +  ++ GKQ+H ++
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL 286

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
           LR+     V + NSLIDMY +C +L  AR+IFD++  +TV+SW++M+ GY  H +  E L
Sbjct: 287 LRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVL 346

Query: 421 RLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSM---KLGLNSLSSVNTAI 476
            LF+ M  E  V+ D VT++ +L  C + G LE       Y M   K+ +   S     +
Sbjct: 347 ELFNLMIDENKVKPDSVTVLAVLSGCSH-GGLEDKGMDIFYDMTSGKISVQPDSKHYGCV 405

Query: 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                + G +E A E   +   +    I W  ++ A + H +
Sbjct: 406 VDMLGRAGRVEAAFEFVKKMPFEPSAAI-WGCLLGACSVHSN 446



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 160/314 (50%), Gaps = 8/314 (2%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           ++LN C   + +   Q++HA  I  H L   + L + LI  Y     L  ++ VF+ +  
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYL-PCVYLRTRLIVFYVKCDSLRDARHVFDVMPE 121

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  ++   S+ G   + L ++ QM      P E T+  V+ SC     F+ G +I
Sbjct: 122 RNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQI 181

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ-RKFKDLKSRWNSLISLAVQNG 212
           H+ ++KL +++   VG +L++ Y K DG     +G+ Q    +D+ S   ++IS   Q G
Sbjct: 182 HSHIIKLNYEAHVYVGSSLLDMYAK-DGKIHEARGIFQCLPERDVVS-CTAIISGYAQLG 239

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
             E++ ELF+ ++ EG + +  T  ++L +   L +L+ G+ VH   + S+    + +  
Sbjct: 240 LDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQN 299

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGFR 331
           +L+ MYSK  +L  A+ +FD + ++  + WN M+  Y + G  +E LEL   M+  +  +
Sbjct: 300 SLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVK 359

Query: 332 ADLFTAIAAVSSIS 345
            D  T +A +S  S
Sbjct: 360 PDSVTVLAVLSGCS 373



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           E L+ M   G   +       ++     + I  G+++HA++++      V +   LI  Y
Sbjct: 44  EALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFY 103

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +C+ L  AR +FD +  + VVSW++MI  Y     + +AL LF +M   G E +  T  
Sbjct: 104 VKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFA 163

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            +L +C+        + +H + +KL   +   V +++   YAK G I  A  +F  + + 
Sbjct: 164 TVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIF--QCLP 221

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            +D+++  ++IS YA+ G   +  +L+ ++++  ++ + +T+  +LTA      ++ G+ 
Sbjct: 222 ERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQ 281

Query: 560 IFKEM--KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           +   +   E   Y   Q    S++++  + G++  AR +  D   +     W  +L    
Sbjct: 282 VHNHLLRSEVPSYVVLQN---SLIDMYSKCGNLTYARRIF-DTLHERTVISWNAMLVGYS 337

Query: 618 MHSE-TELAEL 627
            H E  E+ EL
Sbjct: 338 KHGEGREVLEL 348


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 283/484 (58%), Gaps = 25/484 (5%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN---------TAL 274
           ++  G   DS T   L++  +  +++  G ++         C+ L  N           L
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLI---------CRHLYFNGHQPMMFLVNVL 54

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           ++MY K   L DA  LFD+M  ++ + W  MISAY +    +++LELL+ M+R G R ++
Sbjct: 55  INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNV 114

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           +T  + + + + M ++   + +H  +++ G +  V V ++LID++ +  +   A  +FD 
Sbjct: 115 YTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDE 171

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454
           + T   + W+S+I G+  + +S  AL LF  MK  G   +  T+ ++L AC  +  LE  
Sbjct: 172 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 231

Query: 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
              H + +K   + +  +N A+   Y KCG +E A  +F++ K   +D+ITW++MIS  A
Sbjct: 232 MQAHVHIVKYDQDLI--LNNALVDMYCKCGSLEDARRVFNQMK--ERDVITWSTMISGLA 287

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
           ++G   +  KL+  MK S  +P+ IT +G+L AC +AGL+E+G   F+ MK+ YG  P +
Sbjct: 288 QNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGR 347

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
           EHY  M++LLG+AG +D+A +L+ +M  +PDA  W  LL AC++     LAE  A+K+I+
Sbjct: 348 EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA 407

Query: 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQ 694
           ++PE+AG Y +LSNIYA + KW+ V ++R  +RD G+KK PGCSWIE+ K +H F   D+
Sbjct: 408 LDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDE 467

Query: 695 SHPQ 698
           SHPQ
Sbjct: 468 SHPQ 471



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 191/392 (48%), Gaps = 33/392 (8%)

Query: 31  TATHSFSLLNLC--ENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +AT+S  L+  C      H   +  R++  +G    + L + LI+ Y    LL+ + Q+F
Sbjct: 13  SATYS-ELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + +   N + + T++   SK   ++K L +   M    + P   TY  V+R+C+ + D  
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV- 130

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLA 208
               +H  ++K G +S   V  AL++ + K  G  E+   +           WNS+I   
Sbjct: 131 --RMLHCGIIKEGLESDVYVRSALIDVFAKL-GEPEDALSVFDEMVTGDAIVWNSIIGGF 187

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
            QN +S+ + ELFK M+  G   +  TL ++LR+   L  LELG   H   V  D  +DL
Sbjct: 188 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDL 245

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            +N AL+ MY K  SLEDA+ +F++M ++D + W+ MIS   Q+G+ +E+L+L   M  S
Sbjct: 246 ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSS 305

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV------------HNSLI 376
           G + +  T +  + + S           HA +L +G  Y  S+            +  +I
Sbjct: 306 GTKPNYITIVGVLFACS-----------HAGLLEDGWYYFRSMKKLYGINPGREHYGCMI 354

Query: 377 DMYCECEDLNCARKIFDSVKTKT-VVSWSSMI 407
           D+  +   L+ A K+ + ++ +   V+W +++
Sbjct: 355 DLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 26/294 (8%)

Query: 26  TRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQ 85
            RP++  T+S S+L  C     ++ +H   II  GL  ++ + S LID +A LG    + 
Sbjct: 110 VRPNVY-TYS-SVLRACNGMSDVRMLHCG-IIKEGLESDVYVRSALIDVFAKLGEPEDAL 166

Query: 86  QVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
            VF+ + + +++++ +I+   ++    +  L ++K+M        + T   V+R+C+ L 
Sbjct: 167 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLA 226

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----W 201
               G + H  +VK  +D    + +ALV+ Y KC G  E+ +    R F  +K R    W
Sbjct: 227 LLELGMQAHVHIVK--YDQDLILNNALVDMYCKC-GSLEDAR----RVFNQMKERDVITW 279

Query: 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261
           +++IS   QNG S+++ +LF+LM+  G + +  T++ +L +      LE G         
Sbjct: 280 STMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWY-----YF 334

Query: 262 SDFCKDLSVNTA------LLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
               K   +N        ++ +  K   L+DA  L ++M  + D V W  ++ A
Sbjct: 335 RSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 388


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 292/514 (56%), Gaps = 6/514 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           +N+L+S      + + +F +++ +  +G   D  T   +L+S  +   +  GR VH V +
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
              F  ++ V  +L+  YS      DA  +FD+M  +D V W  +IS Y ++G   E++ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L +   R     +  T ++ + +      +  GK +H    ++     + V N+L+DMY 
Sbjct: 122 LFL---RMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYV 178

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  L  A+++FD +  K +VSW+S+I G V  +   EAL LF +M+  G+E D + + +
Sbjct: 179 KCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTS 238

Query: 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500
           +L AC  +GAL++ +++H +  +  +     + TA+   YAKCGCIEM+ ++F+   +  
Sbjct: 239 VLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFN--GMPH 296

Query: 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           K+++TWN++++  A HG   +  +L+ +M +  +RP+ +TFL +LTAC + GLV EGR  
Sbjct: 297 KNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQY 356

Query: 561 FKEMK-ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           F  MK + Y   P  EHY  MV+LL RA  +DEA EL K MP  PD R+ G LLSACK +
Sbjct: 357 FNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKEN 416

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
             TEL +   ++ + ++  ++G YVLLSNI+A   +W+ V ++R  ++++G+KK PG + 
Sbjct: 417 GNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTV 476

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           IE+    HEF   D  HPQ   I  +L IL  +I
Sbjct: 477 IELDGKAHEFIVGDTRHPQDKRIRLLLKILSDQI 510



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 110 GEYEKT-LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           G+  KT  LVY+++      P   T+P V++SC+  +    G ++H  ++K+GF     V
Sbjct: 12  GDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYV 71

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            ++LV FY  C    +  +   +   +D+ S W  +IS  V+ G  +++  LF  +RM+ 
Sbjct: 72  ENSLVHFYSVCKRFGDASRVFDEMLVRDVVS-WTGVISGYVRAGLFDEAVGLF--LRMD- 127

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            E ++ T +++L +      L +G+ +H ++  S F   L V+ AL+ MY K   L  AK
Sbjct: 128 VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAK 187

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +FD++++KD V W  +IS   Q   PKE+LEL   M  SG   D     + +S+ + + 
Sbjct: 188 QVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLG 247

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
            +++G+ +H ++ R    + + +  +++DMY +C  +  + +IF+ +  K V++W++++ 
Sbjct: 248 ALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLN 307

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
           G   H  + + L LF EM   G+  + VT + IL AC + G
Sbjct: 308 GLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCG 348



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 9/194 (4%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
            L +S+ L+D Y   G L  ++QVF+ +   + + + +I+  L +    ++ L +++ M 
Sbjct: 166 GLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQ 225

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
              + P       V+ +C+ L     G  +H  + +        +G A+V+ Y KC G  
Sbjct: 226 SSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKC-GCI 284

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           E    M  + F  +  +    WN+L++    +G + K  ELF+ M   G   +  T + +
Sbjct: 285 E----MSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAI 340

Query: 240 LRSTVELKSLELGR 253
           L +      +  GR
Sbjct: 341 LTACCHCGLVNEGR 354


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/582 (32%), Positives = 313/582 (53%), Gaps = 16/582 (2%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           VI+SC+ L     G +IH  + ++G  S   V + LV  Y KC G  E  + + +     
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKC-GSLEEARLVFEATPAK 98

Query: 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL---INLLRSTVELKSLELGR 253
               W  LI++  Q+G+S+++  LF  M  +G +  S +    IN   +  E   L  GR
Sbjct: 99  NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEF--LPAGR 156

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H +     F   +   T+L+SMYSK  SLE++   F+ M++ + V WN MI+A+ +  
Sbjct: 157 ALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHR 216

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
              E+L  L  M   G RA   T I  +S+      ++  + +H  +LR G D  V   N
Sbjct: 217 RGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--N 274

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
            +++MY +C  L  A  +F S+    V++W++MI  Y  H  + EALR +  M+ EGV  
Sbjct: 275 VILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVP 334

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS--LSSVNTAIFISYAKCGCIEMAGE 491
           D  T ++++ AC  +G +E  K +H    +LG  +  ++ +  ++   Y KCG +++A  
Sbjct: 335 DDYTYVSVIDACATLGDMEVGKQVH---RRLGDRAFQVTELANSLVNMYGKCGILDVARS 391

Query: 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551
           +FD+    +K  +TWN+MI AYA+H    Q F+L+  M+     P  ITF+ +L+AC NA
Sbjct: 392 IFDKT---AKGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANA 448

Query: 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP 611
           GL EE    F  M++ +G  P   HY  MV  LG+AG + +A  L++ MPF+PD   W  
Sbjct: 449 GLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTS 508

Query: 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671
            L+ C+ H + +  +  A+  I ++PE +  YV L+ I+A AG +   +++R  + DRG+
Sbjct: 509 FLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGI 568

Query: 672 KKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           +K  G S I++G  V+EF A DQS+P++  I+  L  L+ E+
Sbjct: 569 RKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEM 610



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 217/430 (50%), Gaps = 19/430 (4%)

Query: 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           R ++L+S   Q G+   + +  +  +    + D    + +++S   L +L  GR +H + 
Sbjct: 5   RLSTLLSKRQQLGQIAAAIDALQKRK----DADLKECVRVIQSCARLGALAEGRRIHQLI 60

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
                  D+ V+  L+ MY K  SLE+A+++F+    K+   W I+I+   Q G  +E+L
Sbjct: 61  RRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEAL 120

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKN-IEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
            L   M++ G +    +  AA+++ S     +  G+ +HA + R G    V    SL+ M
Sbjct: 121 ALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSM 180

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  L  + K F+S+     VSW++MI  +  H + LEALR   +M LEG+    VT 
Sbjct: 181 YSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTY 240

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           I ++ A      L+  +Y+H   ++ G +    V   I   Y KCGC++ A  +F  + +
Sbjct: 241 ITLMSAYDQPSQLKSARYIHDCILRTGFD--QDVVNVILNMYGKCGCLQDAEAMF--KSM 296

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558
              D+I WN+MI+AY++HG  S+  + Y  M++  V PD  T++ ++ AC   G +E G+
Sbjct: 297 SQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGK 356

Query: 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR---VWGPLLSA 615
            + + + +   ++ + E   S+VN+ G+ G +D AR +     F   A+    W  ++ A
Sbjct: 357 QVHRRLGDR-AFQVT-ELANSLVNMYGKCGILDVARSI-----FDKTAKGSVTWNAMIGA 409

Query: 616 CKMHSETELA 625
              HS  + A
Sbjct: 410 YAQHSHEQQA 419



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 163/346 (47%), Gaps = 10/346 (2%)

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
           ADL   +  + S + +  +  G+++H  + R G    V V N L+ MY +C  L  AR +
Sbjct: 32  ADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLV 91

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC-VNIGA 450
           F++   K V SW+ +I     H +S EAL LF EM  +G++   V+    + AC      
Sbjct: 92  FEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEF 151

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L   + LH    + G        T++   Y+KCG +E + + F  E +   + ++WN+MI
Sbjct: 152 LPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTF--ESMTELNAVSWNAMI 209

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +A+A+H    +  +   +M    +R   +T++ L++A      ++  R I   +  + G+
Sbjct: 210 AAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRT-GF 268

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +  Q+    ++N+ G+ G + +A  + K M  +PD   W  +++A   H  T  A L   
Sbjct: 269 D--QDVVNVILNMYGKCGCLQDAEAMFKSMS-QPDVIAWNTMIAAYSQHGHTSEA-LRFY 324

Query: 631 KLISMEPENAGNYVLLSNIYAAA--GKWNGVAKMRTFLRDRGLKKT 674
           +L+  E     +Y  +S I A A  G      ++   L DR  + T
Sbjct: 325 ELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVT 370



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 110/209 (52%), Gaps = 11/209 (5%)

Query: 36  FSLLNLCENPQHLQQIHARYI----ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
            +L++  + P  L+   ARYI    +  G  Q+++  + +++ Y   G L  ++ +F S+
Sbjct: 241 ITLMSAYDQPSQLKS--ARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFKSM 296

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
           + P+ + + T++   S+ G   + L  Y+ M  + + P + TY  VI +C+ L D   G+
Sbjct: 297 SQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGK 356

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           ++H ++    F    ++ ++LV  Y KC G  +  + +  +  K   + WN++I    Q+
Sbjct: 357 QVHRRLGDRAF-QVTELANSLVNMYGKC-GILDVARSIFDKTAKGSVT-WNAMIGAYAQH 413

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLL 240
              +++FELF LMR++G E    T +++L
Sbjct: 414 SHEQQAFELFLLMRLDGEEPSYITFMSVL 442


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 211/642 (32%), Positives = 335/642 (52%), Gaps = 24/642 (3%)

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--VI 138
           L+ +++VF+ +   + + +  +L   +  G + +   + + M  Q +  A +T+     +
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQGL--ASNTFALGSAL 100

Query: 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK----GMIQRKF 194
           RS +       G ++ +  +K G  +      AL++ Y KC G   + +    GM +R  
Sbjct: 101 RSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKC-GRVRDARQVFDGMPERN- 158

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
                 WN+LI+   ++G    + ELF  M  EG   D  T  +LL + VE  S  L   
Sbjct: 159 ---TVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLL-TAVEGPSCFLMHQ 214

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSG 313
           +H   V       L+V  A ++ YS+  SL+D++ +FD + D +D + WN M+ AY  +G
Sbjct: 215 LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNG 274

Query: 314 FPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMKNIE-WGKQMHANVLRNGSDYQVSV 371
              E+++  + M++ SG   D+++  + +SS S   + +  G+ +H  V+++  +    V
Sbjct: 275 MDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPV 334

Query: 372 HNSLIDMYCECEDLNC----ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            N+LI MY    + NC    A K F+S+  K  VSW+SM+ GY  H  S +AL+ F  M 
Sbjct: 335 CNALIAMYTRYNE-NCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMC 393

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            E V  D       L +   +  L+  K +HG  +  G  S   V++++   Y+K G I+
Sbjct: 394 SENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIID 453

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A + F+E   D    + WN+MI  YA+HG       L+ +M Q     D ITF+GL+T+
Sbjct: 454 DARKSFEEA--DKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITS 511

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C +AGLV+EG  I   M+  YG     EHYA  V+L GRAG +D+A++L+  MPF+PDA 
Sbjct: 512 CSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAM 571

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           VW  LL AC++H   ELA   A  L   EP     YVLLS++Y+  G W+  A ++  ++
Sbjct: 572 VWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMK 631

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            RGL K PG S IE+   VH F A D+SHP+ D IY +L +L
Sbjct: 632 KRGLSKVPGWSLIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 232/471 (49%), Gaps = 20/471 (4%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  N+  +S L+D YA  G +  ++QVF+ +   N++ +  ++   ++ G+    L ++
Sbjct: 123 GLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELF 182

Query: 120 KQMALQSMYPAEDTYPFVIRSC---SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFY 176
            +M  + + P E T+  ++ +    SC L      ++H ++VK G      V +A +  Y
Sbjct: 183 LEMEREGLVPDEATFASLLTAVEGPSCFL----MHQLHGKIVKYGSALGLTVLNAAITAY 238

Query: 177 IKCDGGFENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDS 233
            +C G  ++ + +       +DL S WN+++     NG  +++ + F ++M+  G   D 
Sbjct: 239 SQC-GSLKDSRRIFDGIGDIRDLIS-WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDM 296

Query: 234 GTLINLLRSTVELKSLE-LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS---LEDAKM 289
            +  +++ S  E    +  GR++H + + S       V  AL++MY++      +EDA  
Sbjct: 297 YSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYK 356

Query: 290 LFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349
            F+ +  KD V WN M++ Y Q G   ++L+   CM     R D +   AA+ S S +  
Sbjct: 357 CFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAV 416

Query: 350 IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKG 409
           ++ GKQ+H  V+ +G      V +SLI MY +   ++ ARK F+     + V W++MI G
Sbjct: 417 LQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFG 476

Query: 410 YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNS 468
           Y  H Q+     LF+EM      +D +T + ++ +C + G + E  + L+    K G+  
Sbjct: 477 YAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGV-P 535

Query: 469 LSSVNTAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           L   + A  +  Y + G ++ A +L D    +  D + W +++ A   HG+
Sbjct: 536 LRMEHYACGVDLYGRAGQLDKAKKLIDSMPFE-PDAMVWMTLLGACRIHGN 585



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 5/193 (2%)

Query: 357 HANVLRNGSDYQVSVHNSLIDMYCEC--EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           HA++L++G        N L+  Y     + L  AR++FD V  +  VSW++++  +    
Sbjct: 14  HASLLKSGFAAPTPW-NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASG 72

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474
              EA RL   M  +G+  +   + + L +            L   ++K GL +     +
Sbjct: 73  AHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A+   YAKCG +  A ++FD   +  ++ ++WN++I+ Y + GD +   +L+ +M++  +
Sbjct: 133 ALLDVYAKCGRVRDARQVFD--GMPERNTVSWNALIAGYTESGDMASALELFLEMEREGL 190

Query: 535 RPDLITFLGLLTA 547
            PD  TF  LLTA
Sbjct: 191 VPDEATFASLLTA 203


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 214/713 (30%), Positives = 371/713 (52%), Gaps = 32/713 (4%)

Query: 21  FPANQTRPHMTATHSFSLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYAN 77
           F   + RP+  A    +L+N C    N    ++IH++ I      +N +L + LI  Y+ 
Sbjct: 132 FDRMEVRPNCHAL--IALVNACSCLGNLAAGRRIHSQ-ISDRDFEENSVLGNALISMYSK 188

Query: 78  LGLLSLSQQVFNSI---TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-T 133
            G L  ++Q F+ +   +  + + +  ++    + G   + L +++ M      P    T
Sbjct: 189 CGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVT 248

Query: 134 YPFVIRSC--SCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           +  V+ SC  + LL       IH ++V  G +    V  ALV+ Y K  G  ++   +  
Sbjct: 249 FVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKL-GSLDDAWEVFL 307

Query: 192 RKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR--STVE 245
           RK  +  S      +++IS   QNG  ++S  LF  M +EG +    TL+++L   S ++
Sbjct: 308 RKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQ 367

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           + S     +   + VVS   +D  + T LL+ Y++   L  A+  FD +   D V WN M
Sbjct: 368 VGSATAFVLEQAMEVVS-ATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAM 426

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFR---ADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
            +AY Q    +E+L L   M+  G R   A   TA+ A ++         GK++ + +  
Sbjct: 427 AAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEE 486

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEAL 420
            G +   +V N+ ++MY +C  L  AR +F+ +    +  ++W+SM+  Y  H    EA 
Sbjct: 487 AGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAF 546

Query: 421 RLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            LF  M+ E  V+ + VT + +L A  +  ++   + +H   +  G  S + +  A+   
Sbjct: 547 ELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNM 606

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           YAKCG ++ A  +FD+   + +D+I W S+I+ YA++G   +  KL+  M+Q  VRP+ +
Sbjct: 607 YAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHV 666

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TF+  LTAC + G +E+G  +   M   +G  P+ +H++ +V+LLGR G +DEA +L++ 
Sbjct: 667 TFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLER 726

Query: 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659
              + D   W  LL ACK   E E  E  AE+++ ++PE A +Y++L+++YAAAG+WN  
Sbjct: 727 TS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEA 785

Query: 660 AKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELE 712
           A +R  + D+G++  PGCS +E+ + +H F A D+SHP+++ IY     LELE
Sbjct: 786 ATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIY-----LELE 833



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 269/550 (48%), Gaps = 32/550 (5%)

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
           + + G  + T  V + +A Q  + A  TY  ++++C  L     G+++HA ++    D  
Sbjct: 19  IQRLGVEDLTAAVSRIIADQG-HCAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLH 77

Query: 166 DD--VGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL 223
           +   +   L+  + KC    E E   +  +F  + S   ++I   +++G+ +K+ ELF  
Sbjct: 78  NHSFLASDLIVMHAKCGNLAEAEA--LADRFASVYS-CTAMIRAWMEHGRPDKAMELFD- 133

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
            RME    +   LI L+ +   L +L  GR +H      DF ++  +  AL+SMYSK  S
Sbjct: 134 -RME-VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGS 191

Query: 284 LEDAKMLFDKM---SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF---RADLFTA 337
           L DAK  FD++   S +D V WN MISA+ ++G  +E+L+L   M R G     +  F +
Sbjct: 192 LIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVS 251

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF----D 393
           +      + + ++E  + +H  ++  G + +  V  +L+D Y +   L+ A ++F    D
Sbjct: 252 VLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGD 311

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
              + ++V+ S+MI     +    E+LRLF  M LEG +   VT++++L AC  +     
Sbjct: 312 EEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSA 371

Query: 454 VKYLHGYSMKLGLNSLSSV-NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             ++   +M++   +  +V  T +  +YA+   +  A   FD   I S D+++WN+M +A
Sbjct: 372 TAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFD--AIQSPDVVSWNAMAAA 429

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK---ESYG 569
           Y +H    +   L+ +M    VRP + TF+  LTAC  A   +    I K ++   E  G
Sbjct: 430 YLQHHRSREALVLFERMLLEGVRPSVATFITALTACA-AYPPQTASAIGKRIQSLLEEAG 488

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELA--- 625
            E       + +N+  + G + +AR + + + P + D   W  +L+A   H   + A   
Sbjct: 489 LEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFEL 548

Query: 626 --ELTAEKLI 633
              + AEKL+
Sbjct: 549 FQAMEAEKLV 558


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/660 (29%), Positives = 352/660 (53%), Gaps = 17/660 (2%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           ++  GL ++L + + L+  Y   G +S + ++F+ +   N + + ++++  S  G+    
Sbjct: 213 VVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDD--- 269

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
                     +  P   T   V+  C+   +   G+ +H   VKL  D    V +AL++ 
Sbjct: 270 ---------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM 320

Query: 176 YIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM--EGAEFDS 233
           Y K     +++        K++ S WN+++      G    +F+L + M    E  + D 
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVS-WNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADE 379

Query: 234 GTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDK 293
            T++N +    +   L   + +HC ++  +F  D  +  A ++ Y+K  SL  A+ +F  
Sbjct: 380 VTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHG 439

Query: 294 MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353
           +  K    WN +I  Y QS  P+ SL+  + M  SG   D FT  + +S+ S +K++  G
Sbjct: 440 IRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLG 499

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           K++H  ++RN  +  + V+ S++ +Y  C +L   + +FD+++  ++VSW+++I G++ +
Sbjct: 500 KEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQN 559

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVN 473
                AL LF +M L G++   ++++ +  AC  + +L   +  H Y++K  L   + + 
Sbjct: 560 GFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIA 619

Query: 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533
            +I   YAK G I  + ++F+  K   K   +WN+MI  Y  HG   +  KL+ +M+++ 
Sbjct: 620 CSIIDMYAKNGAITQSSKVFNGLK--EKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTG 677

Query: 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
             PD +TFLG+LTAC ++GL+ EG     +MK S+G +P+ +HYA ++++LGRAG +D A
Sbjct: 678 RNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNA 737

Query: 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653
             +  +M  +PD  +W  LLS C++H   E+ E  A KL  +EPE   NYVLLSN+YA  
Sbjct: 738 LRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGL 797

Query: 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           GKW+ V ++R  +++  L+K  GCSWIE+   V  F   ++     + I ++  ILE++I
Sbjct: 798 GKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKI 857



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 215/474 (45%), Gaps = 31/474 (6%)

Query: 89  NSITSPNSLLYGTILKNLSKF---GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           N+I+S NS      L+ +S F   G+ +K+  V ++ A      + D +  V  +   LL
Sbjct: 34  NAISS-NSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDD-ESSSDVFLLVREALGLLL 91

Query: 146 -------DFISGEKIHAQVVKLGFDSFDDV-GDALVEFYIKCDGGFENEKGMIQRKFKDL 197
                  D   G KIH  V        DDV    ++  Y  C    ++       + K+L
Sbjct: 92  QASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNL 151

Query: 198 KSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVH 256
             +WN++IS   +N    +  E+F K++       D+ T   ++++   +  + +G  VH
Sbjct: 152 -FQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVH 210

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
            + V +   +DL V  AL+S Y     + DA  LFD M +++ V WN MI  +  +G   
Sbjct: 211 GLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDD- 269

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
                        F  D+ T +  +   +  + I  GK +H   ++   D ++ V+N+L+
Sbjct: 270 -----------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALM 318

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM--KLEGVEVD 434
           DMY +   +  ++ IF     K VVSW++M+ G+           L  +M    E V+ D
Sbjct: 319 DMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKAD 378

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            VTI+N +P C +   L  +K LH YS+K        +  A   SYAKCG +  A  +F 
Sbjct: 379 EVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVF- 437

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548
              I SK + +WN++I  YA+  D       + QMK S + PD  T   LL+AC
Sbjct: 438 -HGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSAC 490



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 131/276 (47%), Gaps = 7/276 (2%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           SLL+ C   + L+   ++H  +II + L ++L +  +++  Y + G L   Q +F+++  
Sbjct: 485 SLLSACSKLKSLRLGKEVHG-FIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMED 543

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + + T++    + G  E+ L +++QM L  + P   +   V  +CS L     G + 
Sbjct: 544 NSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREA 603

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA  +K   +    +  ++++ Y K     ++ K     K K   S WN++I     +G+
Sbjct: 604 HAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS-WNAMIMGYGMHGR 662

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG-RIVHCVAVVSDFCKDLSVNT 272
           ++++ +LF+ M+  G   D  T + +L +      L  G R +  +        +L    
Sbjct: 663 AKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYA 722

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRV-VWNIMIS 307
            ++ M  +   L++A  +  +MS++  V +WN ++S
Sbjct: 723 CVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLS 758


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 295/506 (58%), Gaps = 7/506 (1%)

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            +VQ+ K  + F    +  +  +EF+S    N L+  ++      G+ +HC  +    C 
Sbjct: 16  FSVQSAKLTQEF----VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCL 71

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           DL     LL+MY K   L DA  LFD+M +++ + +  +I  Y +S    E++EL + + 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           R     + FT  + + + +TM+ +  G Q+H +V++ G    V V N+L+D+Y +C  + 
Sbjct: 132 REVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 190

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            + ++F     +  V+W+++I G+V      +ALRLF  M    V+   VT  + L AC 
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           ++ ALE    +H  ++K   +    V  A+   YAKCG I+ A  +FD   ++ +D ++W
Sbjct: 251 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFD--LMNKQDEVSW 308

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N+MIS Y+ HG   +  +++ +M++++V+PD +TF+G+L+AC NAGL+++G+  F  M +
Sbjct: 309 NAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQ 368

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
            +G EP  EHY  MV LLGR GH+D+A +L+ ++PF+P   VW  LL AC +H++ EL  
Sbjct: 369 DHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGR 428

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           ++A++++ MEP++   +VLLSN+YA A +W+ VA +R  ++ +G+KK PG SWIE    V
Sbjct: 429 ISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTV 488

Query: 687 HEFWAADQSHPQADAIYTILGILELE 712
           H F   D SHP+   I  +L  L ++
Sbjct: 489 HSFTVGDTSHPEVRVINGMLEWLHMK 514



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 185/361 (51%), Gaps = 5/361 (1%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           L++ Y     L  + ++F+ +   N++ + T+++  ++   + + + ++ ++  + + P 
Sbjct: 79  LLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH-REVLPN 137

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           + T+  V+++C+ +     G +IH  V+K+G  S   V +AL++ Y KC G  EN   + 
Sbjct: 138 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKC-GRMENSMELF 196

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
                     WN++I   VQ G  EK+  LF  M     +    T  + LR+   L +LE
Sbjct: 197 AESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 256

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            G  +H + V + F KD+ V  AL+ MY+K  S++DA+++FD M+ +D V WN MIS Y 
Sbjct: 257 PGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYS 316

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQV 369
             G  +E+L +   M  +  + D  T +  +S+ +    ++ G+    +++++ G +  +
Sbjct: 317 MHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCI 376

Query: 370 SVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             +  ++ +      L+ A K+ D +  + +V+ W +++   V H+  +E  R+ ++  L
Sbjct: 377 EHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHN-DIELGRISAQRVL 435

Query: 429 E 429
           E
Sbjct: 436 E 436


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/521 (34%), Positives = 286/521 (54%), Gaps = 14/521 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN ++S  V+N K  +    F  MR      D+ T   ++        L  G+ VH  A 
Sbjct: 115 WNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPCC----DLGFGQQVH--AD 168

Query: 261 VSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318
           +   C DL   + T LL MY+++  + DA+ +FD M  +  V WN MIS Y + G   +S
Sbjct: 169 IVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKS 228

Query: 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378
           + L   + R G  AD +T    ++  +    +    Q+H+ ++  G       +N+L+++
Sbjct: 229 IGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNL 288

Query: 379 YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438
           Y +C  +  A ++F+ +  + VVSW+ +I G++      EA+ LF +M+L  +E +  T 
Sbjct: 289 YSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTF 348

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
             +L AC +  A +  ++ HG  +K GL  +   V +A+   Y+KCG  EM   L   ++
Sbjct: 349 GGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCG--EMGDALRAFQE 406

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQM---KQSDVRPDLITFLGLLTACVNAGLV 554
           +  +DI +WN +I  YA++G   +  KLY +M     S + P+ +TF+G+L AC + GL+
Sbjct: 407 MPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLL 466

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           +EG   FKEM + +  +P+ EHY  MV+LLGRAG + EA  L+  +P KPD  +WG LL 
Sbjct: 467 KEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLG 526

Query: 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
           ACK+H + ++   TAE L + EP N+ NYVLL+N Y   G+W    ++R  +  RG++KT
Sbjct: 527 ACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVEKT 586

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            GCSW+EIG  +H F A D  HPQ +    +L  L L++ E
Sbjct: 587 AGCSWVEIGTCMHSFLAGDXLHPQIEVASQVLPRLYLQMRE 627



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 175/347 (50%), Gaps = 10/347 (2%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +S NT +LS Y K   + +A  LFD  S +D   WNI++S   ++    E L   M M  
Sbjct: 82  VSYNT-ILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRC 140

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
           S  R D FT     + I    ++ +G+Q+HA++++  SD    +  +L+ MY E  ++  
Sbjct: 141 SSVRPDNFT----YAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGD 196

Query: 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           ARK+FD + ++ +V+W++MI  Y  + +  +++ LF ++  EG+  D  T   +L     
Sbjct: 197 ARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAA 256

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
              +     +H   ++ G  S    N A+   Y+KCG +  A  LF+E  I  +D+++W 
Sbjct: 257 RWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEE--IPDQDVVSWT 314

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
            +I  + + G   +   L+ QM+  D+ P+  TF GLL AC +A   ++GR  F  +   
Sbjct: 315 VIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGR-HFHGLVLK 373

Query: 568 YGYEPSQEHYAS-MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
           +G   +     S +V++  + G M +A    ++MP + D   W  ++
Sbjct: 374 FGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPER-DIASWNGII 419



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 170/365 (46%), Gaps = 28/365 (7%)

Query: 11  LQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSN 70
           L  G   F++   +  RP      +++++  C +    QQ+HA  I+      +  + +N
Sbjct: 128 LGEGLTHFMKMRCSSVRPD---NFTYAIIIPCCDLGFGQQVHAD-IVKVCSDLDAFIGTN 183

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           L+  YA +G +  +++VF+ + S   + +  ++   SK+G  +K++ +++Q+  + +   
Sbjct: 184 LLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISAD 243

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI 190
           E TY  V+   +         ++H+ +++ GF S     +ALV  Y KC  G+       
Sbjct: 244 EYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKC--GYVASA--- 298

Query: 191 QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
            R F+++  +    W  +I   +Q+G  E++  LF  M++   E +S T   LL +  + 
Sbjct: 299 SRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADA 358

Query: 247 KSLELGRIVHCVAV-VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
            + + GR  H + +       D+ V +A++ MYSK   + DA   F +M ++D   WN +
Sbjct: 359 NAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGI 418

Query: 306 ISAYYQSGFPKESLELLMCMV---RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           I  Y Q+G   ++L+L   MV    SG   +  T +  + + S           H  +L+
Sbjct: 419 ICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACS-----------HNGLLK 467

Query: 363 NGSDY 367
            G  Y
Sbjct: 468 EGYSY 472


>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
          Length = 711

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 204/673 (30%), Positives = 345/673 (51%), Gaps = 22/673 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           Q+H   + + G    + + S+LI  Y+    L  S  VF ++ + N++ +  ++   +  
Sbjct: 34  QLHGLLVKV-GCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALH 92

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVG 169
              E  L ++  M L S  P + T+  +   C+       G  +HA  +++GF S+  V 
Sbjct: 93  NRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRSVHALQMRMGFHSYVHVS 152

Query: 170 DALVEFYIKCDGGFENEK---GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
           +AL+  Y KC G  E  +   G I    KDL S WN++I    Q   ++   +L K M  
Sbjct: 153 NALLSMYAKC-GCIEEAQFIFGCI--ACKDLVS-WNAIIFGCSQYVLAKHCLDLLKEMER 208

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSD--FCKDLSVNTALLSMYSKLASL 284
           +    D+ + + +L S    + +E GR  HC   + +      L   + ++ +  +   L
Sbjct: 209 QHIVPDALSFLGVLSSCRHARLVEEGR--HCFKTMIEHGIKPGLDHYSCMVDLLGRAGLL 266

Query: 285 EDAKMLFDKMS-DKDRVVWNIMISAY-----YQSGFPKESLELLMCMVRSGFRADLFTAI 338
           E+A  L   MS   + V+W  ++ +         G       L +   +     D     
Sbjct: 267 EEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGKGETSTDQSILA 326

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           AA+SS +  +    G Q+H  +++ G D  V + +SLI +Y  C  L  +  +F ++ TK
Sbjct: 327 AAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTK 386

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
             VSW++MI G+  H++    L LF+ M+L   + + +T   +   C N   L   K +H
Sbjct: 387 NTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALGKSVH 446

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              M++G +S   V+ A+   YAKCGCI+ A  +F    I  KD+++WN+MI   +++G 
Sbjct: 447 ALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFG--FIACKDLVSWNAMIFGCSQYGL 504

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
              C  L  +M++  + PD ++FLG+L++C +A LVEEGR  FK M E +G +P  +HY+
Sbjct: 505 AKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIE-HGIKPGLDHYS 563

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
            MV+LLGRAG ++EA +L++ M   P+A +WG LL +C++H    +    AE  + +EP 
Sbjct: 564 CMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPG 623

Query: 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP- 697
            A  ++ L+N+YA  G W+ VA++R  ++ RGLK   GCSWIE+G  V+ F A ++S   
Sbjct: 624 CAATHIQLANLYATIGCWSDVARVRMAMKARGLKTNIGCSWIEVGDKVYSFTAENRSKSH 683

Query: 698 QADAIYTILGILE 710
           Q + +  IL  L+
Sbjct: 684 QVNNVLAILDCLQ 696



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 179/315 (56%), Gaps = 4/315 (1%)

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
           AA+SS +  +    G Q+H  +++ G D  V + +SLI +Y  C  L  +  +F ++ TK
Sbjct: 18  AAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTK 77

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458
             VSW++MI G+  H++    L LF+ M L   + + +T   +   C     L   + +H
Sbjct: 78  NTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRSVH 137

Query: 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
              M++G +S   V+ A+   YAKCGCIE A  +F    I  KD+++WN++I   +++  
Sbjct: 138 ALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFG--CIACKDLVSWNAIIFGCSQYVL 195

Query: 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
              C  L  +M++  + PD ++FLG+L++C +A LVEEGR  FK M E +G +P  +HY+
Sbjct: 196 AKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIE-HGIKPGLDHYS 254

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638
            MV+LLGRAG ++EA +L++ M   P+A +WG LL +C++H    +    AE  + +EP 
Sbjct: 255 CMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEP- 313

Query: 639 NAGNYVLLSNIYAAA 653
             G      +I AAA
Sbjct: 314 GKGETSTDQSILAAA 328



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 230/502 (45%), Gaps = 20/502 (3%)

Query: 147 FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
           F  G ++H  +VK+G DS   +G +L+  Y +C    E+   + Q         W ++IS
Sbjct: 29  FTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCS-QLESSYLVFQTMPTKNTVSWTAMIS 87

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
               + + E    LF  M +   + +  T   L     +   L LGR VH + +   F  
Sbjct: 88  GFALHNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRSVHALQMRMGFHS 147

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
            + V+ ALLSMY+K   +E+A+ +F  ++ KD V WN +I    Q    K  L+LL  M 
Sbjct: 148 YVHVSNALLSMYAKCGCIEEAQFIFGCIACKDLVSWNAIIFGCSQYVLAKHCLDLLKEME 207

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           R     D  + +  +SS    + +E G+     ++ +G    +  ++ ++D+      L 
Sbjct: 208 RQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIEHGIKPGLDHYSCMVDLLGRAGLL- 266

Query: 387 CARKIFDSVKTKTV----VSWSSMIKGYVTHDQ-SLEALRLFSEMKLEGVEVDFVTIINI 441
              + +D ++T ++    V W S++     H   S+        +KLE  + +  T  +I
Sbjct: 267 --EEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGKGETSTDQSI 324

Query: 442 LPA----CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           L A    C +         LHG  +K+G +S   + +++   Y++C  +E +  +F  + 
Sbjct: 325 LAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVF--QT 382

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           + +K+ ++W +MIS +A H     C  L+  M+ S  +P+ ITF  L + C N  L+  G
Sbjct: 383 MPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALG 442

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           + +   ++   G+        +++++  + G +DEA+ +   +  K D   W  ++  C 
Sbjct: 443 KSV-HALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACK-DLVSWNAMIFGC- 499

Query: 618 MHSETELAELTAEKLISMEPEN 639
             S+  LA+   + L  ME ++
Sbjct: 500 --SQYGLAKHCLDLLKEMERQH 519



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 191/440 (43%), Gaps = 22/440 (5%)

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280
            +L R      D   L   + S  + +    G  +H + V       + + ++L+++YS+
Sbjct: 1   MELHRKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSR 60

Query: 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340
            + LE + ++F  M  K+ V W  MIS +      +  L L   M+ S  + +  T    
Sbjct: 61  CSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATL 120

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
            S  +    +  G+ +HA  +R G    V V N+L+ MY +C  +  A+ IF  +  K +
Sbjct: 121 FSVCTKHALLALGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDL 180

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL--- 457
           VSW+++I G   +  +   L L  EM+ + +  D ++ + +L +C +   +E  ++    
Sbjct: 181 VSWNAIIFGCSQYVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKT 240

Query: 458 ---HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
              HG  +K GL+  S +   +     + G +E A +L     I    +I W S++ +  
Sbjct: 241 MIEHG--IKPGLDHYSCMVDLL----GRAGLLEEAWDLIQTMSIPPNAVI-WGSLLGSCR 293

Query: 515 KHGDWSQCF-----KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
            HG+ S        +L  +  + +   D       +++C +  +  +G  +   + +  G
Sbjct: 294 VHGNISIGIQAAEHRLKLEPGKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVK-VG 352

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE--LAEL 627
            + +    +S++ L  R   ++ +  + + MP K +   W  ++S   +H+  E  L   
Sbjct: 353 CDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTK-NTVSWTAMISGFALHNRVEPCLHLF 411

Query: 628 TAEKLISMEPENAGNYVLLS 647
            + +L S +P +     L S
Sbjct: 412 ASMRLSSCKPNDITFATLFS 431


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/495 (35%), Positives = 278/495 (56%), Gaps = 36/495 (7%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +HC A+++       +   L+ +Y +   +  A  +F +M+  D V +NIMI  Y + G 
Sbjct: 149 IHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGH 208

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDYQVSVH 372
             E+L+ L  MV  G + D FT +  +     + + + GK +HA + R G      + ++
Sbjct: 209 NIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILN 268

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY-------VTHD----------- 414
           N+L+DMY +C++L  A+ IF+ +  K  +SW++MI GY       + H+           
Sbjct: 269 NALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLV 328

Query: 415 -------------QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
                          L   RLF  M  E +  DFVTIIN++ A   IGAL H +++HG+ 
Sbjct: 329 SWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWV 388

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
           +++ +   + + +A    Y KCG I+ A  +F E  +  KD+  W +MI+ +A HG  S+
Sbjct: 389 VRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFRE--VTEKDVTVWTTMITGFAFHGYGSK 446

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
             +L+ +M Q  V P+ +TF+ +LTAC ++G V +G  IF  MKE YG EP  EHY  +V
Sbjct: 447 ALQLFYEM-QEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLV 505

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +LLGR+G   E +++++ MP KP   +WG +LSAC+ +   E+AE+  ++L+ +EPE  G
Sbjct: 506 DLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEG 565

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            YVLLSNIYA +G+W    K+R  +  RG+KKT GCS + +  ++HEF AAD+ HP+   
Sbjct: 566 GYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIE 625

Query: 702 IYTILGILELEIMEG 716
           I +IL  L+ E+  G
Sbjct: 626 IQSILFCLKSEMKLG 640



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 146/613 (23%), Positives = 251/613 (40%), Gaps = 94/613 (15%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSS-NLIDSYANLGLLSLSQQVFNSITS-PN 95
           LL  C    H +QI A+ + ++ + Q   +S   L  +  +   L ++  +F   T  PN
Sbjct: 37  LLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDMAVLLFRHHTPHPN 96

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
             +Y T++  LS      ++   Y  +    +YP   T+ F++++   L   +   +IH 
Sbjct: 97  LYIYNTMISALSL--SLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQVM---QIHC 151

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEK-GMIQRKFKDLKS----RWNSLISLAVQ 210
             +  G   +  + + L++ Y+      ENEK G+  + F+ + +     +N +I    +
Sbjct: 152 HAIITGSFYYGYLQNTLMKIYL------ENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAK 205

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK--DL 268
            G + ++ +    M   G + D  T++ LL     L   +LG+ VH         K  +L
Sbjct: 206 KGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNL 265

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG-----------FPKE 317
            +N ALL MY K   L  A+ +F+ +  KD + WN MI+ Y + G            P  
Sbjct: 266 ILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCR 325

Query: 318 SL--------------------ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
            L                     L   MV      D  T I  VS+ + +  +  G+ +H
Sbjct: 326 DLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIH 385

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
             V+R        + ++ IDMY +C  +  A  +F  V  K V  W++MI G+  H    
Sbjct: 386 GWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGS 445

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
           +AL+LF EM+ E V  + VT + +L AC + G +             GL   +S+     
Sbjct: 446 KALQLFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQ-----------GLRIFNSMKE--- 490

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             Y     +E  G L D                    + G +S+   +   M    ++P 
Sbjct: 491 -RYGIEPGVEHYGCLVD-----------------LLGRSGRFSEVKDVIEMMP---MKPS 529

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLL---GRAGHMDEA 593
              +  +L+AC   G +E   I  KE+ +    EP +E  Y  + N+    GR  H D+ 
Sbjct: 530 RSIWGAVLSACRAYGNIEIAEIAGKELLK---LEPEKEGGYVLLSNIYATSGRWKHSDKI 586

Query: 594 RELVKDMPFKPDA 606
           RE+++    K  A
Sbjct: 587 REIMESRGVKKTA 599



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 137/302 (45%), Gaps = 45/302 (14%)

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414
           Q+H + +  GS Y   + N+L+ +Y E E +  A ++F  +     VS++ MI GY    
Sbjct: 148 QIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKG 207

Query: 415 QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--V 472
            ++EAL+   EM   G++ D  T++ +L  C  +G  +  K +H +  + GL   S+  +
Sbjct: 208 HNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLIL 267

Query: 473 NTAIFISYAKCGCIEMAGELFDE-----------------------------EKIDSKDI 503
           N A+   Y KC  + +A  +F+                              E +  +D+
Sbjct: 268 NNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDL 327

Query: 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563
           ++WNS+I+ YA+ GD     +L+  M   ++ PD +T + L++A    G +  GR I   
Sbjct: 328 VSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWI--- 384

Query: 564 MKESYGYEPSQEHY------ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
               +G+    +        ++ +++  + G +  A  + +++  K D  VW  +++   
Sbjct: 385 ----HGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEK-DVTVWTTMITGFA 439

Query: 618 MH 619
            H
Sbjct: 440 FH 441


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/470 (35%), Positives = 272/470 (57%), Gaps = 39/470 (8%)

Query: 274 LLSMYSKLASLEDA--KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
           LL   +KL    D   +++F ++   +  +W  +I  Y   G   ES+ L   M R G  
Sbjct: 77  LLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIG 136

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHA-NVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
              FT  A + + S   ++  G+Q+H   +L  G    + V N+LIDMY +C  L C  +
Sbjct: 137 PVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHR 196

Query: 391 IFDSVKTKTVVSWSS-------------------------------MIKGYVTHDQSLEA 419
           +FD +  + V+SW+S                               M+ GY  + +  EA
Sbjct: 197 VFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREA 256

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV--NTAIF 477
           L +F  M+  GV+ D VT++ ++ AC  +GA ++  ++   + + G    S+V   +A+ 
Sbjct: 257 LEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALI 316

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAKCG +E A ++F  E+++ +++ +++SMI  +A HG      +L+ +M +++++P+
Sbjct: 317 DMYAKCGSVEDAYKVF--ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPN 374

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            +TF+G+LTAC +AG+VE+G+ +F  M+E +G  PS++HYA MV+LLGRAG ++EA  LV
Sbjct: 375 RVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLV 434

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           K MP  P   VWG LL AC++H   ++A++ A  L  +EP   GNY+LLSNIYA+AG+W+
Sbjct: 435 KMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWD 494

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGK-LVHEFWAADQSHPQADAIYTIL 706
            V+K+R  +R +GLKK PGCSW+E  K ++HEF+A D SHP++  I   L
Sbjct: 495 DVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQAL 544



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 185/393 (47%), Gaps = 39/393 (9%)

Query: 2   LGLLPPACSLQSGHVKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGL 61
           L +LP     Q     F+ F   Q +  +  +   S+L+ C +   ++Q+HA +I   GL
Sbjct: 10  LFILPKTSYCQLQTQSFIPFSVRQEQ-KILESRLVSVLHGCTHINQVKQVHA-HIFRKGL 67

Query: 62  HQNLILSSNLIDSYANLGLL--SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
            Q   + + L+ +   L +      + VF  +  PN  L+  +++  +  G + +++L+Y
Sbjct: 68  EQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLY 127

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL-GFDSFDDVGDALVEFYIK 178
             M  Q + P   T+  ++++CS  LD   G ++H Q + + GF S   VG+ L++ Y+K
Sbjct: 128 NSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVK 187

Query: 179 C---DGGFENEKGMIQR----------------------------KFKDLKSRWNSLISL 207
           C     G      M+ R                              KD+ + W ++++ 
Sbjct: 188 CGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVA-WTAMVTG 246

Query: 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF--C 265
             QN +  ++ E+F+ M+  G + D  TL+ ++ +  +L + +    V  VA  S F   
Sbjct: 247 YAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPT 306

Query: 266 KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
            ++ V +AL+ MY+K  S+EDA  +F++M +++   ++ MI  +   G    ++EL   M
Sbjct: 307 SNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEM 366

Query: 326 VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358
           +++  + +  T I  +++ S    +E G+Q+ A
Sbjct: 367 LKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFA 399



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 136/296 (45%), Gaps = 44/296 (14%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W +LI      G   +S  L+  MR +G    S T   LL++      + LGR VH   +
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTI 166

Query: 261 -VSDFCKDLSVNTALLSMY-------------------------------SKLASLEDAK 288
            +  F  DL V   L+ MY                               +K+ ++E A 
Sbjct: 167 LIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAAS 226

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LFD +  KD V W  M++ Y Q+  P+E+LE+   M  +G + D  T +  +S+ + + 
Sbjct: 227 ELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQL- 285

Query: 349 NIEWGKQMHANVLRN-------GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
               G   +AN +R+       G    V V ++LIDMY +C  +  A K+F+ ++ + V 
Sbjct: 286 ----GAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVY 341

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
           S+SSMI G+  H  +  A+ LF EM    ++ + VT I +L AC + G +E  + L
Sbjct: 342 SYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQL 397



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 142/297 (47%), Gaps = 41/297 (13%)

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL--NCARKIFDSVKTK 398
           VS +    +I   KQ+HA++ R G +    V   L+    + +       R +F  V+  
Sbjct: 43  VSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYP 102

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC-----VNIGALEH 453
               W+++I+GY      +E++ L++ M+ +G+     T   +L AC     VN+G   H
Sbjct: 103 NPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVH 162

Query: 454 VKYL----HGYSMKLGLNSLSSVN------------------------TAIFISYAKCGC 485
            + +     G  + +G N+L  +                         T++ ++YAK G 
Sbjct: 163 TQTILIGGFGSDLYVG-NTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           +E A ELFD   +  KD++ W +M++ YA++    +  +++ +M+ + V+ D +T +G++
Sbjct: 222 MEAASELFD--GLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVI 279

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHY--ASMVNLLGRAGHMDEARELVKDM 600
           +AC   G  +    + +++ E  G+ P+      ++++++  + G +++A ++ + M
Sbjct: 280 SACAQLGAAKYANWV-RDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 268/456 (58%), Gaps = 7/456 (1%)

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH   V +   +DL +   LL  Y++  +++DA  LFD ++ +D   W++M+  + ++
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG--SDYQVS 370
           G           ++R G   D +T    + +     +++ G+ +H  VL++G  SD+ V 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
              SL+DMY +C  +  A+++F+ + +K +V+W+ MI  Y   + + E+L LF  M+ EG
Sbjct: 140 A--SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEG 196

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           V  D V ++ ++ AC  +GA+   ++ + Y ++ G +    + TA+   YAKCG +E A 
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAR 256

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           E+FD  K   K++I+W++MI+AY  HG       L+  M    + P+ +TF+ LL AC +
Sbjct: 257 EVFDRMK--EKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSH 314

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           AGL+EEG   F  M E +   P  +HY  MV+LLGRAG +DEA  L++ M  + D R+W 
Sbjct: 315 AGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWS 374

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670
            LL AC++HS+ ELAE  A  L+ ++P+N G+YVLLSNIYA AGKW  VAK R  +  R 
Sbjct: 375 ALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRK 434

Query: 671 LKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           LKK PG +WIE+    ++F   D+SHPQ+  IY +L
Sbjct: 435 LKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEML 470



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 168/325 (51%), Gaps = 5/325 (1%)

Query: 30  MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN 89
           M A     LL  C N  H++Q+HA +++ +G  Q+L++++ L+ +YA    +  +  +F+
Sbjct: 1   MGAESCIDLLLRCRNVFHIRQVHA-HVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFD 59

Query: 90  SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFIS 149
            +T  +S  +  ++   +K G++      ++++    + P   T PFVIR+C    D   
Sbjct: 60  GLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQI 119

Query: 150 GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF-KDLKSRWNSLISLA 208
           G  IH  V+K G  S   V  +LV+ Y KC    E+ + + +R   KDL + W  +I  A
Sbjct: 120 GRVIHDVVLKHGLLSDHFVCASLVDMYAKCIV-VEDAQRLFERMLSKDLVT-WTVMIG-A 176

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDL 268
             +  + +S  LF  MR EG   D   ++ ++ +  +L ++   R  +   V + F  D+
Sbjct: 177 YADCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDV 236

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
            + TA++ MY+K  S+E A+ +FD+M +K+ + W+ MI+AY   G  K++++L   M+  
Sbjct: 237 ILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSC 296

Query: 329 GFRADLFTAIAAVSSISTMKNIEWG 353
               +  T ++ + + S    IE G
Sbjct: 297 AILPNRVTFVSLLYACSHAGLIEEG 321



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 132/274 (48%), Gaps = 5/274 (1%)

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
           +N+   +Q+HA+V+ NG+   + + N L+  Y + + ++ A  +FD +  +   +WS M+
Sbjct: 14  RNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMV 73

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
            G+            F E+   GV  D  T+  ++  C +   L+  + +H   +K GL 
Sbjct: 74  GGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLL 133

Query: 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527
           S   V  ++   YAKC  +E A  LF  E++ SKD++TW  MI AYA    + +   L+ 
Sbjct: 134 SDHFVCASLVDMYAKCIVVEDAQRLF--ERMLSKDLVTWTVMIGAYADCNAY-ESLVLFD 190

Query: 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           +M++  V PD +  + ++ AC   G +   R     +  + G+        +M+++  + 
Sbjct: 191 RMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRN-GFSLDVILGTAMIDMYAKC 249

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
           G ++ ARE+   M  K +   W  +++A   H  
Sbjct: 250 GSVESAREVFDRMKEK-NVISWSAMIAAYGYHGR 282


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 204/645 (31%), Positives = 339/645 (52%), Gaps = 13/645 (2%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           ++L+D Y   G +    +VF  +   N + + ++L   +    + + + ++ +M  + ++
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+  V+ + +       G+++HAQ VK G  S   V ++L+  Y KC G  E+ K 
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKC-GLVEDAKS 257

Query: 189 MIQ-RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
           +    + +D+ S WN+L++    N    ++ +LF   R    +    T   +++    LK
Sbjct: 258 VFNWMETRDMVS-WNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLK 316

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMI 306
            L L R +H   +   F    +V TAL   YSK   L DA  +F   +    VV W  +I
Sbjct: 317 QLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAII 376

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV-SSISTMKNIEWGKQMHANVLRNGS 365
           S   Q+G    ++ L   M       + FT  A + +S+S +       Q+HA V++   
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP-----PQIHAQVIKTNY 431

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
            +  SV  +L+  Y +      A  IF  ++ K VV+WS+M+  +        A  LF++
Sbjct: 432 QHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK 491

Query: 426 MKLEGVEVDFVTIINILPACVNIGA-LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484
           M ++G++ +  TI +++ AC    A ++  +  H  S+K   +    V++A+   Y++ G
Sbjct: 492 MAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKG 551

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            I+ A  +F  E+   +D+++WNSMIS YA+HG   +  + + QM+ S ++ D +TFL +
Sbjct: 552 NIDSAQIVF--ERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAV 609

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           +  C + GLV EG+  F  M   +   P+ EHYA MV+L  RAG +DE   L++DMPF  
Sbjct: 610 IMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPA 669

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
            A VW  LL AC++H   EL + +A+KL+S+EP ++  YVLLSNIYAAAGKW    ++R 
Sbjct: 670 GAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRK 729

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
            +  R +KK  GCSWI+I   VH F A D+SHP +D IY  L ++
Sbjct: 730 LMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVI 774



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 244/494 (49%), Gaps = 20/494 (4%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD-DVGDALVEFYIKCDG---GFENEKG 188
           T   V+++C  + D + GE++H   VK G D  +   G +LV+ Y+KC     G E  +G
Sbjct: 101 TLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG 160

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
           M ++        W SL++         +   LF  MR EG   +  T  ++L +     +
Sbjct: 161 MPKKNV----VTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L+LG+ VH  +V       + V  +L++MY+K   +EDAK +F+ M  +D V WN +++ 
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
              +    E+L+L      +  +    T    +   + +K +   +Q+H+ VL++G    
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 369 VSVHNSLIDMYCECEDLNCARKIFD-SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
            +V  +L D Y +C +L  A  IF  +  ++ VVSW+++I G + +     A+ LFS M+
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMR 396

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
            + V  +  T   +L A ++I   +    +H   +K     + SV TA+  SY+K G  E
Sbjct: 397 EDRVMPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQHIPSVGTALLASYSKFGSTE 452

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A  +F  + I+ KD++ W++M+S +A+ GD      L+ +M    ++P+  T   ++ A
Sbjct: 453 DALSIF--KMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 548 CV--NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           C   +AG V++GR  F  +   Y Y  +    +++V++  R G++D A ++V +     D
Sbjct: 511 CACPSAG-VDQGR-QFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA-QIVFERQTDRD 567

Query: 606 ARVWGPLLSACKMH 619
              W  ++S    H
Sbjct: 568 LVSWNSMISGYAQH 581



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 227/457 (49%), Gaps = 9/457 (1%)

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK-DL 268
           + G   +  + F + R  G   DS TL  +L++   +    LG  +HC+ V     + ++
Sbjct: 76  RRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEV 135

Query: 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRS 328
           S  T+L+ MY K  S+ +   +F+ M  K+ V W  +++    +    E + L   M   
Sbjct: 136 SAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAE 195

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G   + FT  + +S++++   ++ G+++HA  ++ G    V V NSL++MY +C  +  A
Sbjct: 196 GIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDA 255

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           + +F+ ++T+ +VSW++++ G   ++  LEAL+LF E +    ++   T   ++  C N+
Sbjct: 256 KSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANL 315

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
             L   + LH   +K G +   +V TA+  +Y+KCG +  A  +F      S+++++W +
Sbjct: 316 KQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF-SMTTGSRNVVSWTA 374

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           +IS   ++GD      L+++M++  V P+  T+  +L A ++   +   +I  + +K +Y
Sbjct: 375 IISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS---ILPPQIHAQVIKTNY 431

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
            + PS     +++    + G  ++A  + K M  + D   W  +LS      + E A   
Sbjct: 432 QHIPSVG--TALLASYSKFGSTEDALSIFK-MIEQKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665
             K+ +++      + + S I A A    GV + R F
Sbjct: 489 FNKM-AIQGIKPNEFTISSVIDACACPSAGVDQGRQF 524



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 233/473 (49%), Gaps = 14/473 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           Q++HA+ +   G   ++ + ++L++ YA  GL+  ++ VFN + + + + + T++  L +
Sbjct: 221 QRVHAQSVKF-GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL-Q 278

Query: 109 FGEYE-KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDD 167
             E E + L ++ +         + TY  VI+ C+ L       ++H+ V+K GF    +
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338

Query: 168 VGDALVEFYIKCDGGFENEKGM--IQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
           V  AL + Y KC G   +   +  +    +++ S W ++IS  +QNG    +  LF  MR
Sbjct: 339 VMTALADAYSKC-GELADALNIFSMTTGSRNVVS-WTAIISGCIQNGDIPLAVVLFSRMR 396

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            +    +  T   +L++++ +    L   +H   + +++    SV TALL+ YSK  S E
Sbjct: 397 EDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTE 452

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
           DA  +F  +  KD V W+ M+S + Q+G  + +  L   M   G + + FT  + + + +
Sbjct: 453 DALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512

Query: 346 -TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
                ++ G+Q HA  ++      + V ++L+ MY    +++ A+ +F+    + +VSW+
Sbjct: 513 CPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWN 572

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMK 463
           SMI GY  H  S++A+  F +M+  G+++D VT + ++  C + G  +E  +Y       
Sbjct: 573 SMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRD 632

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
             +N        +   Y++ G ++    L  +    +  ++ W +++ A   H
Sbjct: 633 HKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMV-WRTLLGACRVH 684



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 169/363 (46%), Gaps = 14/363 (3%)

Query: 274 LLSMYSKLASLED---------AKMLFDKMSDKDRVVW-NIMISAYYQSGFPKESLELLM 323
           LL+  +  A +ED         A+   D++  +D  V  N ++  Y + G   E L+   
Sbjct: 29  LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFS 88

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY-QVSVHNSLIDMYCEC 382
              R G   D  T    + +  ++ +   G+Q+H   ++ G D  +VS   SL+DMY +C
Sbjct: 89  VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKC 148

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
             +    ++F+ +  K VV+W+S++ G        E + LF  M+ EG+  +  T  ++L
Sbjct: 149 GSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVL 208

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            A  + GAL+  + +H  S+K G  S   V  ++   YAKCG +E A  +F+   ++++D
Sbjct: 209 SAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW--METRD 266

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
           +++WN++++    +    +  +L+ + + +  +    T+  ++  C N   +   R +  
Sbjct: 267 MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            + + +G+  +     ++ +   + G + +A  +        +   W  ++S C  + + 
Sbjct: 327 CVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 623 ELA 625
            LA
Sbjct: 386 PLA 388


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/444 (37%), Positives = 265/444 (59%), Gaps = 3/444 (0%)

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           + ++ S  + +  A  +F ++ + +   WN MI  Y +S  P  +LEL   M  S    D
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T    + +I+ + ++  G+++H+  +RNG +  V V N+L+ MY  C     A K+F+
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFE 199

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            +  + +V+W+S+I GY  + +  EAL LF EM L GVE D  T++++L AC  +GAL  
Sbjct: 200 LMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALAL 259

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            +  H Y +K+GL+       A+   YAKCG I  A ++FDE  ++ K +++W S+I   
Sbjct: 260 GRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDE--MEEKSVVSWTSLIVGL 317

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A +G   +  +L+ ++++  + P  ITF+G+L AC + G+V+EG   FK MKE YG  P 
Sbjct: 318 AVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPK 377

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHY  MV+LLGRAG + +A E +++MP +P+A VW  LL AC +H    L E+   +L+
Sbjct: 378 IEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLL 437

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +EP+++G+YVLLSN+YA+  +W+ V K+R  +   G+KKTPG S +E+   +HEF   D
Sbjct: 438 QLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGD 497

Query: 694 QSHPQADAIYTILG-ILELEIMEG 716
           +SHPQ + IY  L  I +L  +EG
Sbjct: 498 RSHPQTEEIYVKLAEITKLLKLEG 521



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 23/336 (6%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSL------SQQVFNSI 91
           LL+   +    +QIHA + I HG+     L++  +  Y    LLS       + Q+F+ I
Sbjct: 46  LLSCASSKFKFRQIHA-FSIRHGV----PLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQI 100

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
            +PN   + T+++  ++       L +Y+QM +  + P   TYPF++++ + L+D   GE
Sbjct: 101 QNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGE 160

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           K+H+  ++ GF+S   V + LV  Y  C G  E+   + +   +     WNS+I+    N
Sbjct: 161 KVHSIAIRNGFESLVFVQNTLVHMYAAC-GHAESAHKLFELMAERNLVTWNSVINGYALN 219

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G+  ++  LF+ M + G E D  T+++LL +  EL +L LGR  H   V      +L   
Sbjct: 220 GRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAG 279

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            ALL +Y+K  S+  A  +FD+M +K  V W  +I     +GF KE+LEL   + R G  
Sbjct: 280 NALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLM 339

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
               T +  + + S           H  ++  G DY
Sbjct: 340 PSEITFVGVLYACS-----------HCGMVDEGFDY 364



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 159/318 (50%), Gaps = 2/318 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN++I    ++     + EL++ M +   E D+ T   LL++  +L  +  G  VH +A+
Sbjct: 108 WNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAI 167

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            + F   + V   L+ MY+     E A  LF+ M++++ V WN +I+ Y  +G P E+L 
Sbjct: 168 RNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALT 227

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M   G   D FT ++ +S+ + +  +  G++ H  +++ G D  +   N+L+D+Y 
Sbjct: 228 LFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYA 287

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  +  A K+FD ++ K+VVSW+S+I G   +    EAL LF E++ +G+    +T + 
Sbjct: 288 KCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVG 347

Query: 441 ILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC + G + E   Y      + G+         +     + G ++ A E      + 
Sbjct: 348 VLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQ 407

Query: 500 SKDIITWNSMISAYAKHG 517
              ++ W +++ A   HG
Sbjct: 408 PNAVV-WRTLLGACTIHG 424


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/431 (38%), Positives = 263/431 (61%), Gaps = 5/431 (1%)

Query: 266 KDLSVNTALLSMYSKL---ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
           +D+S NT L++  ++    +S+  A+ LFD MS+ D V++N +   Y +S  P E   L 
Sbjct: 60  EDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLF 119

Query: 323 MCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382
           + ++      D +T  + + + +  K +E G+Q+H   ++ G D  V V  +LI+MY EC
Sbjct: 120 VEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTEC 179

Query: 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
           ED++ AR +FD +    VV +++MI GY   ++  EAL LF EM+ + ++ + +T++++L
Sbjct: 180 EDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVL 239

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502
            +C  +G+L+  K++H Y+ K G      VNTA+   +AKCG ++ A  +F  E +  KD
Sbjct: 240 SSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIF--ENMRYKD 297

Query: 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562
              W++MI AYA HG       ++ +M+  +V+PD ITFLGLL AC + GLVEEGR  F 
Sbjct: 298 TQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFS 357

Query: 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSET 622
            M   +G  PS +HY SMV+LLGRAGH+++A E +  +P  P   +W  LL+AC  H+  
Sbjct: 358 WMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNL 417

Query: 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
           ELAE  +E+++ ++  + G+YV+LSN+YA   KW  V  +R  ++DR   K PGCS IE+
Sbjct: 418 ELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEV 477

Query: 683 GKLVHEFWAAD 693
             +VHEF++ D
Sbjct: 478 NNVVHEFFSGD 488



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 168/333 (50%), Gaps = 7/333 (2%)

Query: 192 RKFKDLKSRWNSLISLAVQNGKSEKS-----FELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           R   D  S  + +I  ++  G S  +     F LF  +  +    D+ T  +LL++    
Sbjct: 85  RHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVA 144

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
           K+LE GR +HC+++      ++ V   L++MY++   ++ A+ +FD++ +   V +N MI
Sbjct: 145 KALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMI 204

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           + Y +   P E+L L   M     + +  T ++ +SS + + +++ GK +H    ++G  
Sbjct: 205 TGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFC 264

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
             V V+ +LIDM+ +C  L+ A  IF++++ K   +WS+MI  Y  H Q+  ++ +F  M
Sbjct: 265 KYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERM 324

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           + E V+ D +T + +L AC + G +E  + Y      + G+        ++     + G 
Sbjct: 325 RSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGH 384

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
           +E A E  D+  I    ++ W  +++A + H +
Sbjct: 385 LEDAYEFIDKLPISPTPML-WRILLAACSSHNN 416



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 194/397 (48%), Gaps = 9/397 (2%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID---SYANLGLLSLSQQVFNSITSP 94
           L++ C + + L QI A  I  H   +++  ++ LI+          +S ++ +F++++ P
Sbjct: 37  LISKCNSERELMQIQAYAIKSH--QEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEP 94

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           + +++ +I +  S+     +   ++ ++    + P   T+P ++++C+       G ++H
Sbjct: 95  DIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLH 154

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
              +KLG D    V   L+  Y +C+   +  + +  R  +     +N++I+   +  + 
Sbjct: 155 CLSMKLGVDDNVYVCPTLINMYTECED-VDAARCVFDRIVEPCVVCYNAMITGYARRNRP 213

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            ++  LF+ M+ +  + +  TL+++L S   L SL+LG+ +H  A    FCK + VNTAL
Sbjct: 214 NEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTAL 273

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + M++K  SL+DA  +F+ M  KD   W+ MI AY   G  + S+ +   M     + D 
Sbjct: 274 IDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDE 333

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            T +  +++ S    +E G++  + ++   G    +  + S++D+      L  A +  D
Sbjct: 334 ITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFID 393

Query: 394 SVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
            +  + T + W  ++    +H+ +LE     SE  LE
Sbjct: 394 KLPISPTPMLWRILLAACSSHN-NLELAEKVSERILE 429


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 268/452 (59%), Gaps = 2/452 (0%)

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           VH     +    DL V   LL M +K   L  A +LF+KM ++D V W++MI  + ++G 
Sbjct: 22  VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGD 81

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
            +   +    ++R+G + D F+    + +      +  G+ +H+ VL+NG      V ++
Sbjct: 82  YERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCST 141

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434
           L+DMY +C  ++ A+++FD +  K +V+ + MI GY    +  E+  LF +M+ +G   D
Sbjct: 142 LVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPD 201

Query: 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494
            V ++ I+ AC  +GA+   + +H Y      +    + TA+   YAKCG I+ + E+FD
Sbjct: 202 KVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFD 261

Query: 495 EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
             +++ K++I+W++MI AY  HG   +  +L+  M  S + P+ ITF+ LL AC +AGLV
Sbjct: 262 --RMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLV 319

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           ++G  +F  M  SYG  P  +HY  MV+LLGRAG +D+A  L+++M  + D  +W   L 
Sbjct: 320 DDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLG 379

Query: 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
           AC++H + +LAE  A+ L+S++ +N G+Y+LLSNIYA AG+W  VAK+R  +  R LKK 
Sbjct: 380 ACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKI 439

Query: 675 PGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           PG +WIE+  +++ F A D SH +++ IY +L
Sbjct: 440 PGYTWIEVDNIIYRFGAGDNSHLRSNEIYEML 471



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 163/317 (51%), Gaps = 2/317 (0%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W+ +I   V+NG  E+ F+ F+ +   G++ D+ +L  ++++  +   L +GR++H   +
Sbjct: 69  WSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVL 128

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D  V + L+ MY+K   +++AK LFD+M  KD V   +MI+ Y + G P ES  
Sbjct: 129 KNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWV 188

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           L   M R GF  D    +  V++ + +  +   + +H  V        V +  ++IDMY 
Sbjct: 189 LFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYA 248

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +C  ++ +R+IFD ++ K V+SWS+MI  Y  H Q  EAL LF  M   G+  + +T I+
Sbjct: 249 KCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFIS 308

Query: 441 ILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           +L AC + G ++  ++     S+  G+       T +     + G ++ A  L +  +++
Sbjct: 309 LLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVE 368

Query: 500 SKDIITWNSMISAYAKH 516
            KD   W + + A   H
Sbjct: 369 -KDEGIWCAFLGACRIH 384



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 190/383 (49%), Gaps = 6/383 (1%)

Query: 36  FSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
            S L  C N   ++Q+HA+ +   G+  +LI+++ L+   A    L  +  +FN +   +
Sbjct: 7   ISTLFKCRNIFQIKQVHAQ-VTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERD 65

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
            + +  ++    K G+YE+    ++++      P   + PFVI++C   +  I G  IH+
Sbjct: 66  PVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHS 125

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR-KFKDLKSRWNSLISLAVQNGKS 214
            V+K G    + V   LV+ Y KC G  +N K +  R   KDL +R   +I+   + GK 
Sbjct: 126 TVLKNGLHLDNFVCSTLVDMYAKC-GMIDNAKQLFDRMPKKDLVTR-TVMIAGYAECGKP 183

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
            +S+ LF  MR +G   D   ++ ++ +  +L ++   R+VH       +  D+ + TA+
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAM 243

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           + MY+K  S++ ++ +FD+M  K+ + W+ MI AY   G  +E+LEL   M+ SG   + 
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNR 303

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANV-LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
            T I+ + + S    ++ G Q+ + + +  G    V  +  ++D+      L+ A ++ +
Sbjct: 304 ITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIE 363

Query: 394 SVKT-KTVVSWSSMIKGYVTHDQ 415
           +++  K    W + +     H Q
Sbjct: 364 NMEVEKDEGIWCAFLGACRIHRQ 386



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 4/285 (1%)

Query: 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400
           +S++   +NI   KQ+HA V   G  + + V N L+ M  + +DL  A  +F+ ++ +  
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDP 66

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           VSWS MI G+V +       + F E+   G + D  ++  ++ AC +   L   + +H  
Sbjct: 67  VSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            +K GL+  + V + +   YAKCG I+ A +LFD  ++  KD++T   MI+ YA+ G  +
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFD--RMPKKDLVTRTVMIAGYAECGKPN 184

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
           + + L+ QM++    PD +  + ++ AC   G + + R++  +   +  Y    E   +M
Sbjct: 185 ESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLV-HDYVCARRYSLDVELGTAM 243

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           +++  + G +D +RE+   M  K +   W  ++ A   H +   A
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQK-NVISWSAMIGAYGYHGQGREA 287


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/673 (28%), Positives = 357/673 (53%), Gaps = 39/673 (5%)

Query: 49  QQIHARYIILHGLHQ-NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           + +H   +   G+ + +L  ++ L++ Y  LG L+ ++++F+ +   N + + T+++  +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK----IHAQVVKLGFD 163
           + G++E    +++++     +   +   FV+ +   L   +        +H+   KLG D
Sbjct: 139 QRGDFEAAAALFRRL----RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHD 194

Query: 164 SFDDVGDALVEFYIKCDGGFENE---KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFEL 220
               VG  L++ Y  C    + E    G++++        W +++S   +N   E +F  
Sbjct: 195 HNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKD----AVVWTAMVSCYSENDCPENAFRC 250

Query: 221 FKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI-VHCVAVVSDFCKDLSVNTALLSMYS 279
            +                    +  L ++   R  +H  A+ +    +  V  ALL MY+
Sbjct: 251 AQ--------------------SCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYA 290

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           K   ++DA++ F+ +   D ++ + MIS Y QS   +++ EL + ++RS    + ++  +
Sbjct: 291 KCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSS 350

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
            + + + M  +++GKQ+H + ++ G +  + V N+L+D Y +C D++ + KIF S++   
Sbjct: 351 VLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDAN 410

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
            VSW++++ G+       EAL +F EM+   +    VT  ++L AC +  ++ H   +H 
Sbjct: 411 EVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHC 470

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
              K   N+ + +  ++  +YAKCG I  A ++F  + +  +DII+WN++IS YA HG  
Sbjct: 471 SIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF--QHLMERDIISWNAIISGYALHGQA 528

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
           +   +L+ +M +S+V  + ITF+ LL+ C + GLV  G  +F  M+  +G +PS EHY  
Sbjct: 529 ADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC 588

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           +V LLGRAG +++A + + D+P  P A VW  LLS+C +H    L   +AEK++ +EP++
Sbjct: 589 IVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQD 648

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQA 699
              YVLLSN+YAAAG  + VA +R  +R+ G++K PG SW+EI   +H F      HP  
Sbjct: 649 ETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDM 708

Query: 700 DAIYTILGILELE 712
             I  +L  L L+
Sbjct: 709 RVINAMLEWLNLK 721



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 19/301 (6%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDS 74
           FLR   +   P+  +  S  +L  C N   L   +QIH   I + G   +L + + L+D 
Sbjct: 333 FLRLMRSSVLPNEYSLSS--VLQACTNMVQLDFGKQIHNHAIKI-GHESDLFVGNALMDF 389

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           YA    +  S ++F+S+   N + + TI+   S+ G  E+ L V+ +M    M   + TY
Sbjct: 390 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 449

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V+R+C+         +IH  + K  F++   +G++L++ Y KC G   +   + Q   
Sbjct: 450 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKC-GYIRDALKVFQHLM 508

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     WN++IS    +G++  + ELF  M     E +  T + LL           G +
Sbjct: 509 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCC-----STGLV 563

Query: 255 VHCVAVVSDFCKDLSVN------TALLSMYSKLASLEDA-KMLFDKMSDKDRVVWNIMIS 307
            H +++      D  +       T ++ +  +   L DA + + D  S    +VW  ++S
Sbjct: 564 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 623

Query: 308 A 308
           +
Sbjct: 624 S 624


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/578 (32%), Positives = 306/578 (52%), Gaps = 66/578 (11%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I    Q G+ E + ++F  M  +       TL N+L S     S  +G+ VH   V
Sbjct: 75  WTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVV 134

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM-------------------------- 294
                  + V  +LL+MY+K   L+ AK++FD+M                          
Sbjct: 135 KLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALA 194

Query: 295 -----SDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRADLFTAIAAVSSISTMK 348
                S++D V WN MI+   Q GF  E+L+    +++ +  + D F+  +A+S+ + ++
Sbjct: 195 QFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLE 254

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC-------------------------- 382
            + +GKQ+H  ++R   D   +V N+LI MY +                           
Sbjct: 255 KLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTAL 314

Query: 383 -------EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435
                   D+  AR+IF+S+K   VV+W++MI GYV +  + +A+ +F  M  EG   + 
Sbjct: 315 LNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNS 374

Query: 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495
            T+  +L A  ++ +L H K +H  +++ G     SV  A+   YAK G I  A ++F+ 
Sbjct: 375 FTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNL 434

Query: 496 EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555
            +  ++D ++W SMI A A+HG   +  +L+ QM    ++PD IT++G+L+AC + GLVE
Sbjct: 435 LR-QNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVE 493

Query: 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           +GR  F  MK  +  +P+  HYA MV+L GRAG + EA + V++MP +PD   WG LLS+
Sbjct: 494 QGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSS 553

Query: 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTP 675
           CK++   +LA++ AE+L+ +EP N+G Y  L+N+Y++ GKW+  AK+R  ++ RG+KK  
Sbjct: 554 CKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQ 613

Query: 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           G SW++I    H F   D  HPQ D IY ++  +  EI
Sbjct: 614 GLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEI 651



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 150/607 (24%), Positives = 257/607 (42%), Gaps = 122/607 (20%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128
           + ++  YA  G L  + QVF+ I   +S+ + TI+   ++ G +E  + ++  M    + 
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P + T   V+ SC+       G+K+H+ VVKLG  +   V ++L+  Y K  G  +  K 
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT-GDLKMAKV 163

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR--------------------MEG 228
           +  R      S WN++ISL +  G+ + +   F+L+                      E 
Sbjct: 164 VFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEA 223

Query: 229 AEF------------DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
            +F            D  +L + L +   L+ L  G+ +H   V + F    +V  AL+S
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALIS 283

Query: 277 MYS---------------------------------KLASLEDAKMLFDKMSDKDRVVWN 303
           MY+                                 KL  +  A+ +F+ + D D V W 
Sbjct: 284 MYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWT 343

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI  Y Q+G   +++E+   MV  G R + FT  A +S+ S++ ++  GKQ+HA+ +R+
Sbjct: 344 AMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRS 403

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKTVVSWSSMIKGYVTHDQSLEALRL 422
           G     SV N+L  MY +   +N ARK+F+ ++  +  VSW+SMI     H    EA+ L
Sbjct: 404 GEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIEL 463

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           F +M   G++ D +T + +L AC            HG                       
Sbjct: 464 FEQMLTLGIKPDHITYVGVLSACT-----------HG----------------------- 489

Query: 483 CGCIEMAGELFD----EEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            G +E     FD      KID   +  +  M+  + + G   + +K    M    + PD+
Sbjct: 490 -GLVEQGRSYFDLMKNVHKIDPT-LSHYACMVDLFGRAGLLQEAYKFVENMP---MEPDV 544

Query: 539 ITFLGLLTAC-----VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593
           I +  LL++C     V+   V   R++  E   S         Y+++ N+    G  D+A
Sbjct: 545 IAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGA-------YSALANVYSSCGKWDDA 597

Query: 594 RELVKDM 600
            ++ K M
Sbjct: 598 AKIRKLM 604



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 192/432 (44%), Gaps = 69/432 (15%)

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
            S NT +LS Y+K   LE A  +FD +  +D V W  +I  Y Q G  ++++++ + MV+
Sbjct: 42  FSWNT-ILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK 100

Query: 328 SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387
                  FT    ++S +   +   GK++H+ V++ G    V V NSL++MY +  DL  
Sbjct: 101 DKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKM 160

Query: 388 ARKIFDSVKTKT-------------------------------VVSWSSMIKGYVTHDQS 416
           A+ +FD +K +                                +VSW+SMI G   H   
Sbjct: 161 AKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFD 220

Query: 417 LEALRLFSE-MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475
            EAL+ FS  +K   ++ D  ++ + L AC N+  L   K +HGY ++   ++  +V  A
Sbjct: 221 NEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNA 280

Query: 476 IFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR 535
           +   YAK G +E+A  + ++  I   D+I + ++++ Y K GD +   +++  +K     
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKD---- 336

Query: 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595
           PD++ +  ++   V  GL  +   +FK M  S G  P+    A+M++       ++  ++
Sbjct: 337 PDVVAWTAMIVGYVQNGLNNDAIEVFKTM-VSEGPRPNSFTLAAMLSASSSVTSLNHGKQ 395

Query: 596 LVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655
                            + A  + S   L+      L +M              YA AG 
Sbjct: 396 -----------------IHASAIRSGEALSPSVGNALTTM--------------YAKAGS 424

Query: 656 WNGVAKMRTFLR 667
            NG  K+   LR
Sbjct: 425 INGARKVFNLLR 436



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 115/249 (46%), Gaps = 6/249 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           ++I  + L++ Y  LG ++ ++Q+FNS+  P+ + +  ++    + G     + V+K M 
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            +   P   T   ++ + S +     G++IHA  ++ G      VG+AL   Y K  G  
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKA-GSI 425

Query: 184 ENEKGMIQ--RKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
              + +    R+ +D  S W S+I    Q+G  E++ ELF+ M   G + D  T + +L 
Sbjct: 426 NGARKVFNLLRQNRDTVS-WTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLS 484

Query: 242 STVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS-DKDR 299
           +      +E GR     +  V      LS    ++ ++ +   L++A    + M  + D 
Sbjct: 485 ACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDV 544

Query: 300 VVWNIMISA 308
           + W  ++S+
Sbjct: 545 IAWGSLLSS 553


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 203/658 (30%), Positives = 351/658 (53%), Gaps = 13/658 (1%)

Query: 37  SLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S+L+ C+ P  L+   QIH+ +I   G   ++ +S+ LI+ Y   G L L+++VFN +  
Sbjct: 157 SILSACQTPIVLEFGEQIHS-HITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRE 215

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  ++    + G+ ++  ++++++      P + ++  ++ +C+   D   G K+
Sbjct: 216 RNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKL 275

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           HA + + G +    VG+AL+  Y +C G   N + +        +  WN++I+     G 
Sbjct: 276 HAYIKQAGLEQEVLVGNALISMYARC-GSLANARQVFDNLRSPNRVSWNAMIA-GYGEGF 333

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            E++F LF+ M+ +G + D  T  +LL    +   L  G+ +H   V + +  D++V TA
Sbjct: 334 MEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATA 393

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L+SMY+K  SLE+A+ +F++M +K+ V WN  I+   + G  KE+ ++   M R     D
Sbjct: 394 LISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPD 453

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T I  ++S ++ ++ E G+ +H  + + G      V N+LI MY  C  L  AR++F 
Sbjct: 454 HVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFY 513

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
            ++ + + SW++MI  YV H  +  A  LF + K EG + D  T IN+L A  N+  L+ 
Sbjct: 514 RIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDA 573

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +HG   K GL     + T +   Y+KCG +  A  +F  + +  KD++ WN+M++AY
Sbjct: 574 GRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVF--KNVQEKDVVCWNAMLAAY 631

Query: 514 AKHGDWSQ-CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
             H D  Q   KL+ QM+   V PD  T+  +L AC   G +E G+    ++KE+   E 
Sbjct: 632 -NHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEA-AMET 689

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
              HYA MV  LGRA  + EA E ++++  + DA +W  LL AC++H    LAE   E L
Sbjct: 690 DTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVGLAETAVEHL 749

Query: 633 ISMEPENAGNYV-LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689
           + ++ +++      L NIYAAAG+W  V+ ++  +R+ GL     C+ IE+    H F
Sbjct: 750 LDVKAQSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCT-IEVNSEFHTF 806



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 166/615 (26%), Positives = 315/615 (51%), Gaps = 17/615 (2%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           ++ L++ LI  Y+  G +  +  VF S+   + + +  ++   +  G  ++ + ++ QM 
Sbjct: 85  DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQ 144

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            + + P ++++  ++ +C   +    GE+IH+ + K G++S  +V  AL+  Y KC G  
Sbjct: 145 REGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKC-GSL 203

Query: 184 ENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
           E    + ++ F +++ R    W ++IS  VQ+G S+++F LF+ +   G + +  +  ++
Sbjct: 204 E----LARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASI 259

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           L +      LE G  +H     +   +++ V  AL+SMY++  SL +A+ +FD +   +R
Sbjct: 260 LGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNR 319

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN MI+ Y + GF +E+  L   M + GF+ D FT  + ++  +   ++  GK++H+ 
Sbjct: 320 VSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQ 378

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           ++R   +  V+V  +LI MY +C  L  ARK+F+ +  K  VSW++ I     H    EA
Sbjct: 379 IVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEA 438

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
            ++F +M+ + V  D VT I +L +C +    E  +Y+HG   + G+ S + V  A+   
Sbjct: 439 FQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISM 498

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539
           Y +CG +  A E+F   +I  +D+ +WN+MI+AY +HG     F L+ + K    + D  
Sbjct: 499 YGRCGKLADAREVF--YRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKY 556

Query: 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599
           TF+ +L A  N   ++ GR I   + E  G E       +++ +  + G + +A  + K+
Sbjct: 557 TFINVLRAIANLEDLDAGRKIHG-LVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKN 615

Query: 600 MPFKPDARVWGPLLSACKM--HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
           +  K D   W  +L+A     H +  L      +L  + P++A  Y  + N  A  G   
Sbjct: 616 VQEK-DVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSA-TYTSVLNACARLGAIE 673

Query: 658 GVAKMRTFLRDRGLK 672
              K  T L++  ++
Sbjct: 674 HGKKFHTQLKEAAME 688



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 266/487 (54%), Gaps = 8/487 (1%)

Query: 134 YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR- 192
           Y   ++ C        G+K+H  +    F+    + + L+  Y KC G  E+   + Q  
Sbjct: 54  YARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKC-GSIEDANNVFQSM 112

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           + KD+ S WN++IS    +G+ +++ +LF  M+ EG + +  + I++L +      LE G
Sbjct: 113 EDKDVVS-WNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFG 171

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
             +H     + +  D++V+TAL++MY K  SLE A+ +F++M +++ V W  MIS Y Q 
Sbjct: 172 EQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQH 231

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVH 372
           G  KE+  L   ++RSG + +  +  + + + +   ++E G ++HA + + G + +V V 
Sbjct: 232 GDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVG 291

Query: 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432
           N+LI MY  C  L  AR++FD++++   VSW++MI GY       EA RLF +M+ +G +
Sbjct: 292 NALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGEGFME-EAFRLFRDMQQKGFQ 350

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492
            D  T  ++L  C +   L   K LH   ++    +  +V TA+   YAKCG +E A ++
Sbjct: 351 PDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKV 410

Query: 493 FDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552
           F++  +  K+ ++WN+ I+   +HG   + F+++ QM++ DV PD +TF+ LL +C +  
Sbjct: 411 FNQ--MPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPE 468

Query: 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612
             E GR I  ++ + +G   +     +++++ GR G + +ARE+   +  + D   W  +
Sbjct: 469 DFERGRYIHGKI-DQWGMLSNNLVANALISMYGRCGKLADAREVFYRIR-RRDLGSWNAM 526

Query: 613 LSACKMH 619
           ++A   H
Sbjct: 527 IAAYVQH 533



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 234/434 (53%), Gaps = 6/434 (1%)

Query: 191 QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250
           +R+ ++  S W++   +     K +      +L+   G + +       L+  V+ KSL 
Sbjct: 9   RRRIQESGSTWDASAKVGRNTWKGKSIRGGVQLLGKRGVQANLNFYARRLQECVQAKSLA 68

Query: 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYY 310
            G+ VH     + F  D+ +N  L+SMYSK  S+EDA  +F  M DKD V WN MIS Y 
Sbjct: 69  EGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYA 128

Query: 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
             G  +E+++L   M R G + +  + I+ +S+  T   +E+G+Q+H+++ + G +  V+
Sbjct: 129 LHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVN 188

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
           V  +LI+MYC+C  L  ARK+F+ ++ + VVSW++MI GYV H  S EA  LF ++   G
Sbjct: 189 VSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSG 248

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
            + + V+  +IL AC N   LE    LH Y  + GL     V  A+   YA+CG +  A 
Sbjct: 249 TQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANAR 308

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++FD   + S + ++WN+MI+ Y + G   + F+L+  M+Q   +PD  T+  LL  C +
Sbjct: 309 QVFD--NLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICAD 365

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
              +  G+ +  ++  +  +E       +++++  + G ++EAR++   MP K +A  W 
Sbjct: 366 RADLNRGKELHSQIVRT-AWEADVTVATALISMYAKCGSLEEARKVFNQMPEK-NAVSWN 423

Query: 611 PLLSACKMH-SETE 623
             ++ C  H SE E
Sbjct: 424 AFIACCCRHGSEKE 437


>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
          Length = 709

 Score =  326 bits (835), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 203/657 (30%), Positives = 353/657 (53%), Gaps = 49/657 (7%)

Query: 65  LILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMAL 124
           L  +++L+ +Y   GLLS + ++ + +   ++  Y  ++    + G     L  +  M  
Sbjct: 62  LAAANSLLHAYLQCGLLSRALRLLDEMPRRDAATYAPLISAHCRLGAPLDALRAFLDMLA 121

Query: 125 ----------QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174
                       + P E T   V+++C    D      +H  +V  GF     V  +LV 
Sbjct: 122 WGCSDEEGVDDVVRPNEFTAAAVVQACGLARDERLARMVHGYLVAGGFCDDPFVLGSLVN 181

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234
            Y K        + ++    +D+ S W +++S  V N   E++  +F +M  +G   ++ 
Sbjct: 182 MYAKVGDVASARRLLLGLPCRDVVS-WTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNV 240

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T+++++++   + + EL   VH + V+ +   D SV  +L+ MY+K   +E+A  LF   
Sbjct: 241 TMLSVIQACALMGASELFGPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIRLFKGF 300

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS-TMKNIEWG 353
                         Y ++G         +C        D+  A+    +IS ++KN   G
Sbjct: 301 --------------YLKTGS--------VCS-----NEDVLAAVLYGCTISGSVKN---G 330

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           + +HA+ ++ G+   +SV NSL+ MY   E ++ A  +F+ ++ K +VSW+++I      
Sbjct: 331 EGLHAHTIKMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKT 390

Query: 414 DQSLEALRLFSEMKLE---GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLS 470
           D+  EA+ +FS +      G+  DFVT++++L AC N G L   + LHGY MK G     
Sbjct: 391 DRVNEAMDIFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDV 450

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530
           S+  A+   YAK G I+ A  +F  E++D KD+++WNSMI+AY  HGD     +++ Q+K
Sbjct: 451 SICNALISMYAKLGRIDFAEMIF--ERMDIKDLVSWNSMINAYGMHGDGHSALRVFHQLK 508

Query: 531 QSDV-RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589
            +    P+ ITF+ +++AC ++GLV EG   F+ M   +G EPS +HYA +V+LLGR+G 
Sbjct: 509 DAGTPAPNAITFVSVISACSHSGLVSEGHKCFESMGRDHGIEPSMDHYACVVDLLGRSGR 568

Query: 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649
             EA + ++DMP +PD+ +WGPLL+AC++H   +LAE  A++L ++EPE+    V LSN 
Sbjct: 569 FAEAEQFIRDMPVRPDSTIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNT 628

Query: 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL-VHEFWAADQSHPQADAIYTI 705
           YA+ G+W   AK+R+ +R  GL+K  G S++++G +   +F +AD  H  A+ IY++
Sbjct: 629 YASVGRWRDAAKIRSEMRRVGLRKETGWSFVDVGGVEGFKFVSADTRHHDAEKIYSV 685



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 194/431 (45%), Gaps = 40/431 (9%)

Query: 26  TRPH-MTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
            RP+  TA        L  + +  + +H  Y++  G   +  +  +L++ YA +G ++ +
Sbjct: 134 VRPNEFTAAAVVQACGLARDERLARMVHG-YLVAGGFCDDPFVLGSLVNMYAKVGDVASA 192

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
           +++   +   + + +  I+         E+ L V+  M    + P   T   VI++C+ +
Sbjct: 193 RRLLLGLPCRDVVSWTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACALM 252

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSL 204
                   +HA VV             L+E         E++  ++           NSL
Sbjct: 253 GASELFGPVHALVV-------------LLE--------LEHDASVV-----------NSL 280

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSG--TLINLLRSTVELKSLELGRIVHCVAVVS 262
           I +  +NG  E++  LFK   ++     S    L  +L       S++ G  +H   +  
Sbjct: 281 IMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLAAVLYGCTISGSVKNGEGLHAHTIKM 340

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL- 321
                +SV  +L+ MY++   ++ A ++F+ M  KD V WN +IS   ++    E++++ 
Sbjct: 341 GAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRVNEAMDIF 400

Query: 322 --LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
             L      G   D  T ++ + + S    +  G+ +H  V+++G  Y VS+ N+LI MY
Sbjct: 401 SVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDVSICNALISMY 460

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV-DFVTI 438
            +   ++ A  IF+ +  K +VSW+SMI  Y  H     ALR+F ++K  G    + +T 
Sbjct: 461 AKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTPAPNAITF 520

Query: 439 INILPACVNIG 449
           ++++ AC + G
Sbjct: 521 VSVISACSHSG 531



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 111/502 (22%), Positives = 209/502 (41%), Gaps = 61/502 (12%)

Query: 237 INLLRSTVELKSLELGRIVHCVAVVSDFCKD----LSVNTALLSMYSKLASLEDAKMLFD 292
           + LLR   E +   L   +H   + S   +     L+   +LL  Y +   L  A  L D
Sbjct: 27  VALLRGAAERRDTALTSALHAALLKSGALRSRQAPLAAANSLLHAYLQCGLLSRALRLLD 86

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG----------FRADLFTAIAAVS 342
           +M  +D   +  +ISA+ + G P ++L   + M+  G           R + FTA A V 
Sbjct: 87  EMPRRDAATYAPLISAHCRLGAPLDALRAFLDMLAWGCSDEEGVDDVVRPNEFTAAAVVQ 146

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           +    ++    + +H  ++  G      V  SL++MY +  D+  AR++   +  + VVS
Sbjct: 147 ACGLARDERLARMVHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLLLGLPCRDVVS 206

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W++++ G V +    EAL +F  M  +GV  + VT+++++ AC  +GA E    +H   +
Sbjct: 207 WTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACALMGASELFGPVHALVV 266

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI---------ITWNSMISAY 513
            L L   +SV  ++ + YAK G +E A  LF    + +  +         + +   IS  
Sbjct: 267 LLELEHDASVVNSLIMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLAAVLYGCTISGS 326

Query: 514 AKHGDW-----------------SQCFKLYTQMKQSDVR---------PDLITFLGLLTA 547
            K+G+                  +    +Y + +Q D            D++++  +++ 
Sbjct: 327 VKNGEGLHAHTIKMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISC 386

Query: 548 CVNAGLVEEGRIIFKEMKESY--GYEPSQEHYASMVNLLGRAGHMDEAREL---VKDMPF 602
                 V E   IF  +  +   G  P      SM+     AG + + + L   V    F
Sbjct: 387 LAKTDRVNEAMDIFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGF 446

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
             D  +   L+S        + AE+  E+   M+ ++  ++  + N Y   G  +G + +
Sbjct: 447 VYDVSICNALISMYAKLGRIDFAEMIFER---MDIKDLVSWNSMINAYGMHG--DGHSAL 501

Query: 663 RTF--LRDRGLKKTPGCSWIEI 682
           R F  L+D G       +++ +
Sbjct: 502 RVFHQLKDAGTPAPNAITFVSV 523


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/570 (32%), Positives = 311/570 (54%), Gaps = 9/570 (1%)

Query: 150 GEKIHAQVVKL---GFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLIS 206
           G   HAQ++K     F +F  + + LV  Y K D    + K +++         W +LI+
Sbjct: 25  GRAAHAQILKTLKTPFPAF--LYNHLVNMYAKLDH-LNSAKLILELAPCRSVVTWTALIA 81

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
            +VQNG    +   F  M  +    +  T   +L+++  L+    G+ +H +AV      
Sbjct: 82  GSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLIN 141

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+ V  ++  MYSKL  L DA  +FD+M  ++   WN  IS     G P++S+   + ++
Sbjct: 142 DVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELL 201

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
           R G + D  T    +++ S    +  G Q+H  ++R+G    VSV N LID Y +C ++ 
Sbjct: 202 RVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVE 261

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
           C+  +FD +  +  VSWSS+I  YV +++  +A  LF   + E +E     + ++L AC 
Sbjct: 262 CSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACA 321

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
            +  +E  + +   ++K  +     V +A+   Y KCG I+ A + F+   +  +++++W
Sbjct: 322 GLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFN--AMPERNLVSW 379

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565
           N+++  YA  G  ++   L  +M  +  + P  ++ +  L+AC  AG ++ G  IF+ MK
Sbjct: 380 NALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMK 439

Query: 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
           E YG EP  EHYA +V+LLGRAG ++ A + +K MPF P   +WG LL AC+MH + EL 
Sbjct: 440 ERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELG 499

Query: 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL 685
           +L AEKL  ++P+++GN+V+LSN++AA G+W  V  +R  +++ G+KK  G SWI +   
Sbjct: 500 KLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITVDSR 559

Query: 686 VHEFWAADQSHPQADAIYTILGILELEIME 715
           +H F A D+SH +   I  ILG L  E+ +
Sbjct: 560 IHMFQAKDKSHEKDPEIQDILGKLRKEMQD 589



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 219/457 (47%), Gaps = 12/457 (2%)

Query: 67  LSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           L ++L++ YA L  L+ ++ +       + + +  ++    + G +   LL +  M    
Sbjct: 44  LYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDC 103

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           + P + T+P V+++ + L    +G+++HA  VK G  +   VG ++ + Y K   GF N+
Sbjct: 104 VRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKL--GFLND 161

Query: 187 KGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
                + F ++  R    WN+ IS +V +G+ E S   F  +   G + DS T    L +
Sbjct: 162 A---YKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNA 218

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
             +   L  G  +H   + S + +++SV+  L+  Y K   +E ++M+FD+M +++ V W
Sbjct: 219 CSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSW 278

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362
           + +I+AY Q+   +++  L +   +       F   + + + + +  IE+G+ + A  ++
Sbjct: 279 SSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVK 338

Query: 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL 422
              +  + V ++L+DMY +C  ++ A + F+++  + +VSW++++ GY     + +A+ L
Sbjct: 339 ACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVAL 398

Query: 423 FSEM-KLEGVEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISY 480
             EM    G+   +V++I  L AC   G L+  +K       + G+         +    
Sbjct: 399 LEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLL 458

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
            + G +E A +           I  W +++ A   HG
Sbjct: 459 GRAGMVECAYDFIKRMPF-PPTISIWGALLGACRMHG 494



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 181/382 (47%), Gaps = 9/382 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA   +  GL  ++ +  ++ D Y+ LG L+ + +VF+ +   N   +   + N   
Sbjct: 128 KQLHA-LAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVL 186

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G  E +++ + ++      P   T+   + +CS  L    G ++H  +++ G+     V
Sbjct: 187 HGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSV 246

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
            + L++FY KC G  E  + +  R  +     W+SLI+  VQN + EK+  LF   R E 
Sbjct: 247 SNGLIDFYGKC-GEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKED 305

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
            E     + ++L +   L  +E GR V  +AV +   +++ V +AL+ MY K  S+++A+
Sbjct: 306 IEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAE 365

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR-SGFRADLFTAIAAVSSISTM 347
             F+ M +++ V WN ++  Y   G   +++ LL  M   +G      + I A+S+ S  
Sbjct: 366 QAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRA 425

Query: 348 KNIEWGKQMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSS 405
            +++ G ++  ++  R G +     +  L+D+      + CA      +     +S W +
Sbjct: 426 GDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGA 485

Query: 406 MIKGYVTHDQS----LEALRLF 423
           ++     H +     L A +LF
Sbjct: 486 LLGACRMHGKPELGKLAAEKLF 507



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 13/194 (6%)

Query: 38  LLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94
            LN C +   L    Q+H  +II  G  QN+ +S+ LID Y   G +  S+ VF+ +   
Sbjct: 215 FLNACSDKLGLGPGCQLHG-FIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGER 273

Query: 95  NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH 154
           NS+ + +++    +  E EK   ++ +   + + P +     V+ +C+ L +   G  + 
Sbjct: 274 NSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQ 333

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQ 210
           A  VK   +    V  ALV+ Y KC G  +N     ++ F  +  R    WN+L+     
Sbjct: 334 ALAVKACVEQNIFVASALVDMYGKC-GSIDNA----EQAFNAMPERNLVSWNALLGGYAH 388

Query: 211 NGKSEKSFELFKLM 224
            G + K+  L + M
Sbjct: 389 QGHANKAVALLEEM 402


>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
 gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
          Length = 1026

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 195/636 (30%), Positives = 327/636 (51%), Gaps = 7/636 (1%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKN 105
            H + +H   I L GL + + + S L+  Y+ LG L  S  +F   T  N++L+ +++  
Sbjct: 359 NHGESVHGMIIKL-GLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISG 417

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
                E+   L  + +M +  + P   T   VI  C    D    + IHA  V+  F+S+
Sbjct: 418 YLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESY 477

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V +AL+  Y  C G       + Q+    +   WN++IS   + G SE S  LF  M 
Sbjct: 478 QSVMNALLAMYADC-GDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMF 536

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
            E   FD  TLI L+ S    +   +G  VH +A+ S    D+S+  AL++MY+    +E
Sbjct: 537 HEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYANCGIVE 596

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
             + LF+    ++ + +N ++S Y ++   ++ L L   MV++  + +L T +   + + 
Sbjct: 597 AGQQLFNSFCSRNTITYNALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLL---NLLP 653

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
             ++   GK +H+  +RN +  +  +  S + MY    ++   R IF  V  + ++ W++
Sbjct: 654 VCQSQLQGKCIHSYAVRNFTRLETPLFTSAMGMYSRFNNIEYCRTIFSLVSARNLIVWNA 713

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
            +   V   Q+   +  F  M    V  D VT++ ++ AC  +G  +    +    ++ G
Sbjct: 714 FLSACVQCKQADMVVDYFKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAVILQKG 773

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
            +    V  A+  ++++CG I  A ELFD      KD +TW +MI+AY+ HG+      L
Sbjct: 774 FSMNILVLNALIDTHSRCGSISFARELFDSSV--EKDSVTWGAMINAYSMHGNGEAALDL 831

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           ++ M  S V PD ITF+ +L+AC + GLVE+GR +FK ++  +G  P  EHYA MV+LLG
Sbjct: 832 FSMMIDSGVDPDDITFVSILSACSHNGLVEQGRTLFKSLQADHGITPRMEHYACMVDLLG 891

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           R GH+DEA ++V+ MPF P   +   LL AC+ H   ++ E   + LI  E   + +YV+
Sbjct: 892 RTGHLDEAYDIVRSMPFTPSDNLLESLLGACRFHGNYKIGESVGKLLIKSEYGKSRSYVM 951

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681
           LSNIYA+AGKW+   ++R  +  +GL+K  G   +E
Sbjct: 952 LSNIYASAGKWSDCEQLRLDMEAKGLRKNVGVRKLE 987



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 254/503 (50%), Gaps = 9/503 (1%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLY--GTILKN 105
           L++IHAR + + G  Q+  + + L++ Y + G  + +  +F         +Y    +++ 
Sbjct: 57  LREIHAR-LAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAEAYRGRPAVYSLNLVVRC 115

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
            S  G + + L +Y+   L        T+P VIR+C+       G ++H +V++ G  S 
Sbjct: 116 FSDHGFHRELLDLYR--GLCGFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSN 173

Query: 166 DDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMR 225
             V  AL++ Y K      + +       +DL S WN+++S    NG   ++ E  + M+
Sbjct: 174 VGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLIS-WNAMVSGYSVNGCFREAVETLQEMQ 232

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
             G   ++ TL+ ++           G  +H  A+      D S+ +AL+SMY+    L 
Sbjct: 233 QCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLS 292

Query: 286 DAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345
            ++++FD    KD V +N MISAY Q    KE+ E+   M  +G   +L T ++ + S S
Sbjct: 293 SSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCS 352

Query: 346 TMK-NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
            +   I  G+ +H  +++ G   QVSV ++L+ MY +   L+ +  +F     K  + W+
Sbjct: 353 DLLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWN 412

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464
           SMI GY+ +++   AL  F +M++ GV  D  T+IN++  C     L   K +H Y+++ 
Sbjct: 413 SMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRN 472

Query: 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
              S  SV  A+   YA CG I  +  LF  +K++ + +I+WN+MIS +A+ GD      
Sbjct: 473 RFESYQSVMNALLAMYADCGDISTSYTLF--QKMEVRMLISWNTMISGFAEIGDSETSLT 530

Query: 525 LYTQMKQSDVRPDLITFLGLLTA 547
           L+ QM   +V  DL+T +GL+++
Sbjct: 531 LFCQMFHEEVWFDLVTLIGLISS 553



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 190/368 (51%), Gaps = 9/368 (2%)

Query: 219 ELFKLMR-MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSM 277
           EL  L R + G   D+ T   ++R+      L+LGR VHC  + +    ++ V TALL M
Sbjct: 124 ELLDLYRGLCGFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSNVGVQTALLDM 183

Query: 278 YSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTA 337
           Y+K   ++ ++ +FD M  +D + WN M+S Y  +G  +E++E L  M + G   +  T 
Sbjct: 184 YAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCGMSPNASTL 243

Query: 338 IAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT 397
           +  V    +  +   G  +HA  L+ G+    S+ ++LI MY   +DL+ +R +FD    
Sbjct: 244 VGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSSSRLVFDLQPV 303

Query: 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN-IGALEHVKY 456
           K +VS++SMI  Y+ H    EA  +F  M   GV  + +T++++LP+C + +  + H + 
Sbjct: 304 KDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGES 363

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +HG  +KLGL    SV +A+   Y+K G ++ +  LF       K+ I WNSMIS Y  +
Sbjct: 364 VHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFC--CFTEKNNILWNSMISGYLVN 421

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
            +W+     + +M+ + V PD  T + +++ C     +   + I      +Y      E 
Sbjct: 422 NEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSI-----HAYAVRNRFES 476

Query: 577 YASMVNLL 584
           Y S++N L
Sbjct: 477 YQSVMNAL 484



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 195/399 (48%), Gaps = 22/399 (5%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
            L  LLR T  LK L   R +H    V+   +D  V T L+  Y        A +LF + 
Sbjct: 43  VLTVLLRDTCSLKCL---REIHARLAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAEA 99

Query: 295 SDKDRVVW--NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352
                 V+  N+++  +   GF +E L+L   +   GF +D FT    + + +    ++ 
Sbjct: 100 YRGRPAVYSLNLVVRCFSDHGFHRELLDLYRGLC--GFGSDNFTFPPVIRACTAASCLQL 157

Query: 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           G+Q+H  VLR G    V V  +L+DMY +   ++ +R++FD +  + ++SW++M+ GY  
Sbjct: 158 GRQVHCRVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSV 217

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +    EA+    EM+  G+  +  T++ I+  C + G       LH +++K G     S+
Sbjct: 218 NGCFREAVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESL 277

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS 532
            +A+   YA    +  +  +FD + +  KD++++NSMISAY +H +W + F+++  M  +
Sbjct: 278 TSALISMYAAFDDLSSSRLVFDLQPV--KDLVSFNSMISAYMQHSNWKEAFEVFRLMHCA 335

Query: 533 DVRPDLITFLGLLTAC------VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
            V P+LIT + +L +C      +N G    G II        G        +++V++  +
Sbjct: 336 GVGPNLITLVSVLPSCSDLLFGINHGESVHGMII------KLGLAEQVSVVSALVSMYSK 389

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625
            G +D +  L      K +  +W  ++S   +++E  +A
Sbjct: 390 LGKLDSSSLLFCCFTEKNNI-LWNSMISGYLVNNEWNMA 427


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/613 (32%), Positives = 314/613 (51%), Gaps = 44/613 (7%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+PF   S + LL    G       ++    +      +++ F+++    F + +G
Sbjct: 14  PRASTHPF---SAALLL---RGRAARGGSLEARLATVPHERASVLRFWVR-RRRFHDARG 66

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELK 247
           +   +       W   IS   + G+       F  M  EG A  ++  L  ++R    + 
Sbjct: 67  VFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMG 126

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            +E G+ VH   + +    D+ +  A+L MY+K    E A+ +F  M+++D V WNI I 
Sbjct: 127 DVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIG 186

Query: 308 AYYQSGFPKESLEL---------------LMCMVRSGFRADLFTAIAAVSSISTMKN--- 349
           A  QSG    S++L               +  ++RSG  AD  + +  ++    + N   
Sbjct: 187 ACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYT 246

Query: 350 -------------IEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
                         + G+Q+H  VL    +    V +SL+DMYC+C  L  A  +FD   
Sbjct: 247 YSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWS 306

Query: 397 TKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
             T     +WS+M+ GYV + +  EAL LF  M  EGV  D  T+ ++  AC N+G +E 
Sbjct: 307 PLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQ 366

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
            + +HG   KL     + + +AI   YAKCG +E A  +FD  +  +K+I  W SM+ +Y
Sbjct: 367 GRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFD--RACTKNIAVWTSMLCSY 424

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A HG      +L+ +M    + P+ IT +G+L+AC + GLV EG + FK+M+E YG  PS
Sbjct: 425 ASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPS 484

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
            EHY  +V+L GR+G +D+A+  +++     +A VW  LLSAC++H   E A+L +EKL+
Sbjct: 485 IEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLV 544

Query: 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD 693
            +E  +AG+YV+LSNIYA   KW+   ++R  +++R ++K PG SWI +   VH F A D
Sbjct: 545 QLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGD 604

Query: 694 QSHPQADAIYTIL 706
            SHPQ+  IY  L
Sbjct: 605 ASHPQSAEIYAYL 617



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 213/470 (45%), Gaps = 40/470 (8%)

Query: 84  SQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCS 142
           ++ VF+   +  + ++   +   ++ G Y   +  + +M A     P       V+R C+
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 143 CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK----GMIQR------ 192
            + D  SG+++H  +++ G      + +A+++ Y KC G FE  +     M +R      
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKC-GQFERARRVFGAMAERDAVSWN 182

Query: 193 ----------------------KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
                                   +D  S WN++IS  +++G +  +    + M   G  
Sbjct: 183 IAIGACIQSGDILGSMQLFDESPLRDTTS-WNTIISGLMRSGHAADALSHLRRMAQAGVV 241

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
           F+  T          L   +LGR +H   +++    D  V ++L+ MY K   LE A  +
Sbjct: 242 FNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASV 301

Query: 291 FDKMSDKDR---VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTM 347
           FD  S   R     W+ M++ Y Q+G  +E+L+L   M+R G  AD FT  +  ++ + +
Sbjct: 302 FDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANV 361

Query: 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI 407
             +E G+Q+H  V +        + ++++DMY +C +L  AR IFD   TK +  W+SM+
Sbjct: 362 GMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSML 421

Query: 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGL 466
             Y +H Q   A+ LF  M  E +  + +T++ +L AC ++G + E   Y      + G+
Sbjct: 422 CSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGI 481

Query: 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
                    I   Y + G ++ A    +E  I+ + I+ W +++SA   H
Sbjct: 482 VPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIV-WKTLLSACRLH 530



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 197/438 (44%), Gaps = 54/438 (12%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT---------------- 92
           +++H  +++ +G+H +++L + ++D YA  G    +++VF ++                 
Sbjct: 132 KRVHG-WMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQ 190

Query: 93  -------------SP--NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY--P 135
                        SP  ++  + TI+  L + G     L   ++MA   +     TY   
Sbjct: 191 SGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTA 250

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR--- 192
           FV+     L D   G ++H +V+    +    V  +L++ Y KC G  E    +      
Sbjct: 251 FVLAGMLLLPDL--GRQLHGRVLIAALEGDAFVRSSLMDMYCKC-GLLEAAASVFDHWSP 307

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +D+   W+++++  VQNG+ E++ +LF+ M  EG   D  TL ++  +   +  +E G
Sbjct: 308 LTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQG 367

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           R VH       +  D  + +A++ MY+K  +LEDA+ +FD+   K+  VW  M+ +Y   
Sbjct: 368 RQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASH 427

Query: 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG----KQMHANVLRNGSDYQ 368
           G  + ++EL   M       +  T +  +S+ S +  +  G    KQM       G    
Sbjct: 428 GQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEY---GIVPS 484

Query: 369 VSVHNSLIDMYCECEDLNCARKIFD--SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
           +  +N ++D+Y     L+ A+   +  ++  + +V W +++     H Q  E  +L SE 
Sbjct: 485 IEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIV-WKTLLSACRLH-QHNEYAKLASEK 542

Query: 427 KLEGVEVD---FVTIINI 441
            ++  + D   +V + NI
Sbjct: 543 LVQLEQCDAGSYVMLSNI 560



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 132/286 (46%), Gaps = 9/286 (3%)

Query: 29  HMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           H T + +F L  +   P   +Q+H R +++  L  +  + S+L+D Y   GLL  +  VF
Sbjct: 244 HYTYSTAFVLAGMLLLPDLGRQLHGR-VLIAALEGDAFVRSSLMDMYCKCGLLEAAASVF 302

Query: 89  N---SITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLL 145
           +    +T   +  + T++    + G  E+ L ++++M  + +     T   V  +C+ + 
Sbjct: 303 DHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVG 362

Query: 146 DFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLI 205
               G ++H  V KL +     +  A+V+ Y KC G  E+ + +  R      + W S++
Sbjct: 363 MVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKC-GNLEDARSIFDRACTKNIAVWTSML 421

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC 265
                +G+   + ELF+ M  E    +  TL+ +L +   +  +  G + +   +  ++ 
Sbjct: 422 CSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGEL-YFKQMQEEYG 480

Query: 266 KDLSVN--TALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
              S+     ++ +Y +   L+ AK   ++ + + + +VW  ++SA
Sbjct: 481 IVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSA 526


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 260/471 (55%), Gaps = 37/471 (7%)

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
           SK   L  A  +FDK+   D  ++N +   Y +    +  + +   M+      + FT  
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             + +      IE GKQ+HA+VL+ G        N+LI MY   + L  AR++FD++  +
Sbjct: 125 PLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQR 184

Query: 399 TVVSWSSMIKGY-------------------------------VTHDQSLEALRLFSEMK 427
            VVSW+S+I GY                               V  ++  EA  LF  M+
Sbjct: 185 DVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMR 244

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
           LE V +D     ++L AC  +GALE  K++HGY  K G+   S + T +   Y KCGC+E
Sbjct: 245 LENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLE 304

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A E+F+E  +  K I +WN MI   A HG      +L+ +M++  V PD ITF+ +L+A
Sbjct: 305 KASEVFNE--LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 362

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C ++GLVEEG+  F+ M E  G +P  EH+  MV+LLGRAG ++EAR+L+ +MP  PDA 
Sbjct: 363 CAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAG 422

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           V G L+ AC++H  TEL E   +K+I +EP N+G YVLL+N+YA+AG+W  VAK+R  + 
Sbjct: 423 VLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMN 482

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIMEGRR 718
           DRG+KK PG S IE    V EF A  ++HPQA  IY  L     EI+E  R
Sbjct: 483 DRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLD----EILETIR 529



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 146/288 (50%), Gaps = 6/288 (2%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D  +L NL+   V  +SLE  R V      +   +D+   T+L++ YS+   ++ A+ +F
Sbjct: 154 DGFSLNNLIHMYVNFQSLEQARRV----FDNMPQRDVVSWTSLITGYSQWGFVDKAREVF 209

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
           + M +++ V WN MI+AY QS    E+  L   M       D F A + +S+ + +  +E
Sbjct: 210 ELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALE 269

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411
            GK +H  + ++G +    +  ++IDMYC+C  L  A ++F+ +  K + SW+ MI G  
Sbjct: 270 QGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLA 329

Query: 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLS 470
            H +   A+ LF EM+ E V  D +T +N+L AC + G +E  K+   Y  + LGL    
Sbjct: 330 MHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGM 389

Query: 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
                +     + G +E A +L +E  ++  D     +++ A   HG+
Sbjct: 390 EHFGCMVDLLGRAGLLEEARKLINEMPVNP-DAGVLGALVGACRIHGN 436



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 156/350 (44%), Gaps = 35/350 (10%)

Query: 39  LNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SYANLGLLSLSQQVFNSITSPNS 96
           L+ C     L+Q H++ I L GL  +      +I   + +  G L+ + +VF+ I  P++
Sbjct: 27  LDSCSTMAELKQYHSQIIRL-GLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDA 85

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
            +Y TI +   ++      + +Y +M  +S+ P + TYP +IR+C        G++IHA 
Sbjct: 86  YIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAH 145

Query: 157 VVKLGFDSFDDVGDALVEFYI------KCDGGFENEK------------GMIQRKFKDLK 198
           V+K GF +     + L+  Y+      +    F+N              G  Q  F D K
Sbjct: 146 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVD-K 204

Query: 199 SR-------------WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245
           +R             WN++I+  VQ+ +  ++F LF  MR+E    D     ++L +   
Sbjct: 205 AREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTG 264

Query: 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM 305
           L +LE G+ +H     S    D  + T ++ MY K   LE A  +F+++  K    WN M
Sbjct: 265 LGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCM 324

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
           I      G  + ++EL   M R     D  T +  +S+ +    +E GK 
Sbjct: 325 IGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKH 374



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 148/320 (46%), Gaps = 42/320 (13%)

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC---ECEDLNCARKIFDSVK 396
            + S STM  +   KQ H+ ++R G          +I  +C   +  DLN A ++FD + 
Sbjct: 26  GLDSCSTMAEL---KQYHSQIIRLGLSADNDAMGRVIK-FCAISKSGDLNYALEVFDKIP 81

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
                 ++++ +GY+    +   + ++S M  + V  +  T   ++ AC    A+E  K 
Sbjct: 82  HPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQ 141

Query: 457 LHGYSMKLG-------LNSLSS--VN----------------------TAIFISYAKCGC 485
           +H + +K G       LN+L    VN                      T++   Y++ G 
Sbjct: 142 IHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGF 201

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           ++ A E+F  E +  ++ ++WN+MI+AY +     + F L+ +M+  +V  D      +L
Sbjct: 202 VDKAREVF--ELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASML 259

Query: 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605
           +AC   G +E+G+ I   +++S G E   +   +++++  + G +++A E+  ++P K  
Sbjct: 260 SACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKCGCLEKASEVFNELPQK-G 317

Query: 606 ARVWGPLLSACKMHSETELA 625
              W  ++    MH + E A
Sbjct: 318 ISSWNCMIGGLAMHGKGEAA 337



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 123/279 (44%), Gaps = 8/279 (2%)

Query: 35  SFSLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI 91
            FSL NL     N Q L+Q  AR +  +   ++++  ++LI  Y+  G +  +++VF  +
Sbjct: 155 GFSLNNLIHMYVNFQSLEQ--ARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELM 212

Query: 92  TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGE 151
              NS+ +  ++    +     +   ++ +M L+++   +     ++ +C+ L     G+
Sbjct: 213 PERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGK 272

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
            IH  + K G +    +   +++ Y KC G  E    +     +   S WN +I     +
Sbjct: 273 WIHGYIEKSGIELDSKLATTVIDMYCKC-GCLEKASEVFNELPQKGISSWNCMIGGLAMH 331

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSV 270
           GK E + ELFK M  E    D  T +N+L +      +E G+     +  V      +  
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391

Query: 271 NTALLSMYSKLASLEDAKMLFDKMS-DKDRVVWNIMISA 308
              ++ +  +   LE+A+ L ++M  + D  V   ++ A
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGA 430


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 208/729 (28%), Positives = 387/729 (53%), Gaps = 54/729 (7%)

Query: 31  TATHSFSLLNLCE---NPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           T    F LL L     +P   + +HA+++    L +++ L + LI +Y  LGL+  + +V
Sbjct: 96  TIASPFDLLRLSTRYGDPDLARAVHAQFL---KLEEDIFLGNALISAYLKLGLVRDADKV 152

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F+ ++ PN + Y  ++   SK    ++ + ++  M    + P E T+  ++ +C   +D+
Sbjct: 153 FSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDY 212

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNS 203
             G ++H  VVKLG  S   + +AL+  Y KC  GF +   ++ R F+++  R    WN+
Sbjct: 213 QLGSQVHGIVVKLGLLSCVFICNALMGLYCKC--GFLD---LVLRLFEEMPERDITSWNT 267

Query: 204 LISLAVQNGKSEKSFELFKLMRM-EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262
           +IS  V+  K +++F+ F+ M++ +G + D  +L  LL +         G+ +H +A+  
Sbjct: 268 VISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKV 327

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF-------- 314
                LSV+++L+  Y+K  S  D   LF+ M  +D + W  MI++Y + G         
Sbjct: 328 GLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVF 387

Query: 315 ---PKE--------------------SLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351
              PK                     +LEL + M+  G      T  + +++   +K+ +
Sbjct: 388 NKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFK 447

Query: 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF--DSVKTKTVVSWSSMIKG 409
             +Q+   V++ G      +  +L+DMY  C  +  A KIF   S++       +SMI G
Sbjct: 448 VSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICG 507

Query: 410 YVTHDQSLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
           Y  + +  EA+ LF   + EG + +D V   +IL  C +IG  E    +H +++K GL +
Sbjct: 508 YARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQMHCHALKSGLIT 567

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
            + V  A    Y+KC  ++ A  +F+   ++ +DI++WN +++ +  H    +   ++ +
Sbjct: 568 ETGVGNATVSMYSKCWNMDDAVRVFN--TMNMQDIVSWNGLVAGHVLHWQGDKALGIWKK 625

Query: 529 MKQSDVRPDLITFLGLLTACVNA--GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586
           M+++ ++PD ITF  +++A  +    LV+  R +F  M+  +  +P+ EHYAS +++LGR
Sbjct: 626 MEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGR 685

Query: 587 AGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646
            G ++EA + +++MP +PD  VW  LL++C+++    L +L A  ++++EP++  +Y+L 
Sbjct: 686 WGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILK 745

Query: 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           SN+Y+A+G+W    K+R  +R++G +K P  SWI     +H F+A D+SHPQ   IY+ L
Sbjct: 746 SNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGL 805

Query: 707 GILELEIME 715
            IL LE ++
Sbjct: 806 EILILECLK 814


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 287/537 (53%), Gaps = 38/537 (7%)

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KD 267
           ++ GK   +  LF+ +  +    D+ T++  +++     S      +HCVA    F  + 
Sbjct: 108 LRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--EAIHCVAFKRGFIGQS 165

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +    AL+ MY+    L DA+ LFD+M+D+D V W  +I  Y + G P E+  +   MV 
Sbjct: 166 VLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVV 225

Query: 328 S-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM-------- 378
           +     +  T +AA S+   M  +  G+ +H  ++ +G    V++ N+L+DM        
Sbjct: 226 AESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVA 285

Query: 379 -----------------------YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
                                  Y +C DL  A K+F  +  + VVSWS M+  Y   + 
Sbjct: 286 AAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANM 345

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG-YSMKLGLNSLSSVNT 474
             EA+R+F++M   GVE    T++++L AC  + +L+   +L+  Y +   +    +++ 
Sbjct: 346 PDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSN 405

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A    +AKCG +  A  LF    ++ K++++WN+MI A+  HG   +   L+ + K + +
Sbjct: 406 AFIDMFAKCGDVGAASRLF--SNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGI 463

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            PD  T++G+L+AC + GLV EGR  FKEMK  YG EP  EHYA M++LLG+ G + EA 
Sbjct: 464 LPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAF 523

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           E+ + MP   D   WG LL+AC+MH   E+ +  A+KL  ++P ++G YVL+S IYA+  
Sbjct: 524 EVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKS 583

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           KW  V  +RT +RDR +KK PGCS IE+    HEF  AD SH  ++ IY  LG + L
Sbjct: 584 KWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNIYL 640



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 144/323 (44%), Gaps = 44/323 (13%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           + Q+++  + L+  Y +  LL  ++++F+ +   + + + T++   ++ G  ++   V+ 
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221

Query: 121 QMAL-QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           +M + +S++P E T      +   +     G  +H  +V+ G     ++ +ALV+ + KC
Sbjct: 222 RMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKC 281

Query: 180 D------------------------------GGFENEKGMIQRKFKDLKSR----WNSLI 205
                                          G  EN      + FK++ +R    W+ ++
Sbjct: 282 GCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAA----KLFKEIPNRNVVSWSCMV 337

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS--- 262
           +        +++  +F  M   G E    TL+++L +  +L SL++G  ++   +VS   
Sbjct: 338 AAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKV 397

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
           +   +LS   A + M++K   +  A  LF  M DK+ V WN MI A+   G P+E+L L 
Sbjct: 398 ELTPNLS--NAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLF 455

Query: 323 MCMVRSGFRADLFTAIAAVSSIS 345
                +G   D  T I  +S+ S
Sbjct: 456 QEFKGNGILPDEATYIGVLSACS 478



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++M++G++   +   AL LF  +  + + VD  TI+  + A     +    + +H  + K
Sbjct: 101 ATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAAT--SSSPTEAIHCVAFK 158

Query: 464 LGLNSLSSV-NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            G    S +   A+   Y     +  A +LFDE  +  +D+++W ++I  YA+ G   + 
Sbjct: 159 RGFIGQSVLAGNALVHMYTSSMLLPDARKLFDE--MADRDVVSWTTLIDGYARGGLPDEA 216

Query: 523 FKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
           ++++ +M  ++ V P+ +T +   +A    GL+  GR + + + ES G   S     ++V
Sbjct: 217 WRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVES-GGRMSVNLENALV 275

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++ G+ G +  A+E+   MP K D   W  ++SA
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPIK-DVYSWTSMVSA 308


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 287/537 (53%), Gaps = 38/537 (7%)

Query: 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KD 267
           ++ GK   +  LF+ +  +    D+ T++  +++     S      +HCVA    F  + 
Sbjct: 108 LRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT--EAIHCVAFKRGFIGQS 165

Query: 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVR 327
           +    AL+ MY+    L DA+ LFD+M+D+D V W  +I  Y + G P E+  +   MV 
Sbjct: 166 VLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVV 225

Query: 328 S-GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM-------- 378
           +     +  T +AA S+   M  +  G+ +H  ++ +G    V++ N+L+DM        
Sbjct: 226 AESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVA 285

Query: 379 -----------------------YCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
                                  Y +C DL  A K+F  +  + VVSWS M+  Y   + 
Sbjct: 286 AAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANM 345

Query: 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG-YSMKLGLNSLSSVNT 474
             EA+R+F++M   GVE    T++++L AC  + +L+   +L+  Y +   +    +++ 
Sbjct: 346 PDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSN 405

Query: 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534
           A    +AKCG +  A  LF    ++ K++++WN+MI A+  HG   +   L+ + K + +
Sbjct: 406 AFIDMFAKCGDVGAASRLF--SNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGI 463

Query: 535 RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594
            PD  T++G+L+AC + GLV EGR  FKEMK  YG EP  EHYA M++LLG+ G + EA 
Sbjct: 464 LPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAF 523

Query: 595 ELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654
           E+ + MP   D   WG LL+AC+MH   E+ +  A+KL  ++P ++G YVL+S IYA+  
Sbjct: 524 EVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKS 583

Query: 655 KWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILEL 711
           KW  V  +RT +RDR +KK PGCS IE+    HEF  AD SH  ++ IY  LG + L
Sbjct: 584 KWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHVHSEDIYAALGNIYL 640



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 144/323 (44%), Gaps = 44/323 (13%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           + Q+++  + L+  Y +  LL  ++++F+ +   + + + T++   ++ G  ++   V+ 
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221

Query: 121 QMAL-QSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           +M + +S++P E T      +   +     G  +H  +V+ G     ++ +ALV+ + KC
Sbjct: 222 RMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKC 281

Query: 180 D------------------------------GGFENEKGMIQRKFKDLKSR----WNSLI 205
                                          G  EN   +    FK++ +R    W+ ++
Sbjct: 282 GCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKL----FKEIPNRNVVSWSCMV 337

Query: 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS--- 262
           +        +++  +F  M   G E    TL+++L +  +L SL++G  ++   +VS   
Sbjct: 338 AAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKV 397

Query: 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL 322
           +   +LS   A + M++K   +  A  LF  M DK+ V WN MI A+   G P+E+L L 
Sbjct: 398 ELTPNLS--NAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLF 455

Query: 323 MCMVRSGFRADLFTAIAAVSSIS 345
                +G   D  T I  +S+ S
Sbjct: 456 QEFKGNGILPDEATYIGVLSACS 478



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 107/214 (50%), Gaps = 8/214 (3%)

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           ++M++G++   +   AL LF  +  + + VD  TI+  + A     +    + +H  + K
Sbjct: 101 ATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAAT--SSSPTEAIHCVAFK 158

Query: 464 LGLNSLSSV-NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
            G    S +   A+   Y     +  A +LFDE  +  +D+++W ++I  YA+ G   + 
Sbjct: 159 RGFIGQSVLAGNALVHMYTSSMLLPDARKLFDE--MADRDVVSWTTLIDGYARGGLPDEA 216

Query: 523 FKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
           ++++ +M  ++ V P+ +T +   +A    GL+  GR + + + ES G   S     ++V
Sbjct: 217 WRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVES-GGRMSVNLENALV 275

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSA 615
           ++ G+ G +  A+E+   MP K D   W  ++SA
Sbjct: 276 DMFGKCGCVAAAKEVFDGMPIK-DVYSWTSMVSA 308


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 294/525 (56%), Gaps = 9/525 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGTLINLLRSTVELKSLELGRIVHCVA 259
           WN+L  LA  +G   ++ E F  M  +G+   D+ TL ++L +  E+  + +GR VH  A
Sbjct: 183 WNTL--LAGLSGS--EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFA 238

Query: 260 VVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319
                 +   V T L+S+YSK   +E A+ LFD M   D V +N +IS Y  +G    S+
Sbjct: 239 EKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSV 298

Query: 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
            L   ++  G   +  T +A +   S   +    + +H  VL++G      V  ++  ++
Sbjct: 299 NLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLH 358

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
           C   D+  ARK FD++  KT+ SW++MI GY  +  +  A+ LF +M    V  + +TI 
Sbjct: 359 CRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITIS 418

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           + L AC  +GAL   K+LH    +  L     V TA+   YAKCG I  A  +F+   +D
Sbjct: 419 STLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFN--TMD 476

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           +K++++WN+MI+ Y  HG  ++  KLY  M  + + P   TFL +L AC + GLVEEG  
Sbjct: 477 NKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWK 536

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLLSACKM 618
           +F+ M + Y   P  EH   MV+LLGRAG + EA EL+ + P       VWG LL AC +
Sbjct: 537 VFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMV 596

Query: 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCS 678
           H +++LA+L ++KL  ++PEN+G YVLLSN++ +  +++  A +R   + R L KTPG +
Sbjct: 597 HKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYT 656

Query: 679 WIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME-GRRESSE 722
            IEIG   H F A D++HPQ++AIY+ L  L  +++E G R  +E
Sbjct: 657 LIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETE 701


>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
 gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 653

 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 322/591 (54%), Gaps = 35/591 (5%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKF- 194
            ++ C+   D++SG++IH  +V+ GF D     G +LV  Y KC        G+++R   
Sbjct: 66  TLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKC--------GLMRRAVL 117

Query: 195 ------KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
                 +D+   +N+LIS  V NG    + E ++ MR  G   D  T  +LL+ +    +
Sbjct: 118 VFGGSERDVFG-YNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGS---DA 173

Query: 249 LELGRI--VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD-RVVWNIM 305
           +EL  +  VH +A    F  D  V + L++ YSK  S+EDA+ +FD++ D+D  V+WN +
Sbjct: 174 MELSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNAL 233

Query: 306 ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
           ++ Y Q    +++L +   M   G      T  + +S+ +   +I+ G+ +H   ++ GS
Sbjct: 234 VNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGS 293

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE---ALRL 422
              + V N+LIDMY + + L  A  IF+++  + + +W+S++     HD   +    L L
Sbjct: 294 GSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVL---CVHDYCGDHDGTLAL 350

Query: 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS--- 479
           F  M   G+  D VT+  +LP C  + +L   + +HGY +  GL +  S N  I  S   
Sbjct: 351 FERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMD 410

Query: 480 -YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y KCG +  A  +FD  ++  KD  +WN MI+ Y           +++ M ++ V+PD 
Sbjct: 411 MYVKCGDLRDARMVFDSMRV--KDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDE 468

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITF+GLL AC ++G + EGR    +M+  Y   P+ +HYA ++++LGRA  ++EA EL  
Sbjct: 469 ITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDMLGRADKLEEAYELAI 528

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
             P   +  VW  +LS+C++H   +LA +  ++L  +EPE+ G YVL+SN+Y  AGK+  
Sbjct: 529 SKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEE 588

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709
           V  +R  +R + +KKTPGCSWI +   VH F+  +Q+HP+  +I+  L ++
Sbjct: 589 VLDVRDAMRQQNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSIHDWLSLV 639



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 225/475 (47%), Gaps = 8/475 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQIH   +    L  +    ++L++ YA  GL+  +  VF   +  +   Y  ++     
Sbjct: 80  QQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALISGFVV 138

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
            G     +  Y++M    + P + T+P +++  S  ++    +K+H    KLGFDS   V
Sbjct: 139 NGSPLDAMETYREMRANGILPDKYTFPSLLKG-SDAMELSDVKKVHGLAFKLGFDSDCYV 197

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G  LV  Y K     + +K   +   +D    WN+L++   Q  + E +  +F  MR EG
Sbjct: 198 GSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEG 257

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
                 T+ ++L +      ++ GR +H +AV +    D+ V+ AL+ MY K   LE+A 
Sbjct: 258 VGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEAN 317

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            +F+ M ++D   WN ++  +   G    +L L   M+ SG R D+ T    + +   + 
Sbjct: 318 SIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLA 377

Query: 349 NIEWGKQMHANVLRNGSDYQVS----VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS 404
           ++  G+++H  ++ +G   + S    +HNSL+DMY +C DL  AR +FDS++ K   SW+
Sbjct: 378 SLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWN 437

Query: 405 SMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMK 463
            MI GY        AL +FS M   GV+ D +T + +L AC + G L E   +L      
Sbjct: 438 IMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETV 497

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
             +   S     +     +   +E A EL   + I   + + W S++S+   HG+
Sbjct: 498 YNILPTSDHYACVIDMLGRADKLEEAYELAISKPI-CDNPVVWRSILSSCRLHGN 551



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 176/397 (44%), Gaps = 22/397 (5%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-PNSLLYGTILKNL 106
           ++++H     L G   +  + S L+ SY+    +  +Q+VF+ +    +S+L+  ++   
Sbjct: 179 VKKVHGLAFKL-GFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGY 237

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           S+   +E  LLV+ +M  + +  +  T   V+ + +   D  +G  IH   VK G  S  
Sbjct: 238 SQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDI 297

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V +AL++ Y K     E          +DL + WNS++ +    G  + +  LF+ M  
Sbjct: 298 VVSNALIDMYGKSKWLEEANSIFEAMDERDLFT-WNSVLCVHDYCGDHDGTLALFERMLC 356

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN----TALLSMYSKLA 282
            G   D  TL  +L +   L SL  GR +H   +VS      S N     +L+ MY K  
Sbjct: 357 SGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCG 416

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L DA+M+FD M  KD   WNIMI+ Y      + +L++  CM R+G + D  T +  + 
Sbjct: 417 DLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQ 476

Query: 343 SISTMKNIEWGKQMHA------NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
           + S    +  G+   A      N+L     Y       +IDM    + L  A ++  S  
Sbjct: 477 ACSHSGFLNEGRNFLAQMETVYNILPTSDHYAC-----VIDMLGRADKLEEAYELAISKP 531

Query: 397 -TKTVVSWSSMIKGYVTH---DQSLEALRLFSEMKLE 429
                V W S++     H   D +L A +   E++ E
Sbjct: 532 ICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPE 568


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 217/704 (30%), Positives = 368/704 (52%), Gaps = 34/704 (4%)

Query: 39  LNLCENPQHLQ-QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL 97
           L  C+    L  QIH  + +  G    + +S++L+  Y   G    +  VF +++ P+ +
Sbjct: 86  LKACQGESKLGCQIHG-FAVCSGFVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIV 144

Query: 98  LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQV 157
            + T+L   S F E    L   + M    +     TY   +  C     F+ G ++H+ V
Sbjct: 145 SWNTVL---SGFEESVDALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGWQLHSLV 201

Query: 158 VKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGK 213
           VK G      +G+ALV  Y +   G  +E    +R F ++  R    WN++IS   Q GK
Sbjct: 202 VKCGLGCEVFIGNALVTMYSRW--GMLDEA---RRVFDEMPERDLVSWNAMISGYAQEGK 256

Query: 214 SE--KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
               ++  LF  M   G   D  +L   + +   +K+LELGR +H +     +   +SV 
Sbjct: 257 CYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVC 316

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
             L+S YSK    +DAK +F+ +S+++ V W  MIS        ++++ L   M  +G  
Sbjct: 317 NVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMISID-----EEDAVSLFNAMRVNGVY 371

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            +  T I  + +++    +  G  +H   +++    + +V NS I MY + E +  + KI
Sbjct: 372 PNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKI 431

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF--SEMKLEGVEVDFVTIINILPACVNIG 449
           F+ +  +  VSW+++I GY  +    EAL  +  +  +++  +  F +++N + A  +I 
Sbjct: 432 FEELNCRETVSWNALISGYAQNGSYKEALLTYLSAVKEIKPNQYTFGSVLNAIAAAEDI- 490

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
           +L H K  H + +KLGL +   V+ A+   Y K G I  +  +F+E     +    W ++
Sbjct: 491 SLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETL--ERTQFAWTAI 548

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           ISAYA+HGD+     LYT+M++  + PD ITFL +L AC   G+V+ G  +F  M + + 
Sbjct: 549 ISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHRVFDSMVKKHS 608

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629
            EP+ EHY+ MV++LGR G +DEA EL+  +P  P   V   LL +C++H   E+AE   
Sbjct: 609 IEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVV 668

Query: 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL---- 685
            +LI M+P ++G YVL++N+YA  GKW  VA++R  +R RG+KK  G SW+++  +    
Sbjct: 669 GRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDVSNVDSLY 728

Query: 686 VHEFWAADQSHPQADAIYTI---LGILELEIMEGRRESSEELKF 726
           +H F + D+SHP+++ I  I   LG L+++I++  RE   E  +
Sbjct: 729 LHGFSSGDKSHPESENICKIAEFLG-LQMKILKENREREGECGY 771


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 204/692 (29%), Positives = 360/692 (52%), Gaps = 22/692 (3%)

Query: 37  SLLNLCENPQ-HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           S+L  C N   +L       +I  G   +  ++++ ID Y   G L  +Q+ F+S  + +
Sbjct: 53  SILKACSNTSFNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKD 112

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           S+ +  ++      G     L  + +       P   +   VI++   L  +  G   H 
Sbjct: 113 SVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHG 172

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQ 210
            + + GF +   V ++L+  Y +    F        + F ++  R     W+ +I   VQ
Sbjct: 173 YIFRSGFSAILSVQNSLLSLYAEVHMYFA------YKLFGEMSVRNDVVSWSVMIGGFVQ 226

Query: 211 NGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            G+ E+ F +F+ M  E G   D  T++++L++   LK + LG +VH + +      DL 
Sbjct: 227 IGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLF 286

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V  +L+ MYSK  ++  A   F ++ +K+ + WN+M+SAY  +    E+L LL  MVR G
Sbjct: 287 VGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVREG 346

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D  T    +       +    + +H  ++R G +    + NS+ID Y +C  +  AR
Sbjct: 347 AEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELAR 406

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +FD +  K VV+WS+MI G+  + +  EA+ +F +M  E V  + V+I+N++ AC    
Sbjct: 407 MVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACAVSA 465

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L   K+ HG +++ GL S  ++ T+I   Y+KCG IE +   F++  I  K+++ W++M
Sbjct: 466 ELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQ--IPQKNVVCWSAM 523

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           ISA+  +G   +   L+ ++KQ+  +P+ +T L LL+AC + GL+EEG   F  M + +G
Sbjct: 524 ISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKHG 583

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAEL 627
            EP  EHY+ +V++L RAG  +EA EL++ +P   +  A +WG LLS+C+ +    L   
Sbjct: 584 IEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSG 643

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A +++ +EP ++  Y+L SN+YA  G     AKMR   +++G+K   G S + I     
Sbjct: 644 AASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINSQTW 703

Query: 688 EFWAADQSHPQADAIYTIL----GILELEIME 715
            F A D  +P+AD IY ++    G+++++ ++
Sbjct: 704 RFVAGDVLNPRADEIYLMVKKLHGVMKIDCLK 735



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 196/435 (45%), Gaps = 31/435 (7%)

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLEL 251
           +  DL S+    I  A  +G  +++ +L+  +R+ GA+  D+  L ++L++     S  L
Sbjct: 11  RLSDLISK----IKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNL 65

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  +H   +        S+  + +  Y K   L+ A+  FD   +KD V WN+M+   + 
Sbjct: 66  GTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFS 125

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G     L   +    + F+ ++ + +  + +   +K    G   H  + R+G    +SV
Sbjct: 126 NGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSV 185

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLE- 429
            NSL+ +Y E   +  A K+F  +  +  VVSWS MI G+V   +  +   +F  M  E 
Sbjct: 186 QNSLLSLYAEVH-MYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEA 244

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           G+  D VT++++L AC N+  +     +HG  +  GL     V  ++   Y+KC  +  A
Sbjct: 245 GIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSA 304

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT--- 546
            + F E  I  K+II+WN M+SAY  +    +   L   M +     D +T   +L    
Sbjct: 305 FKAFKE--IPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAK 362

Query: 547 ------ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
                  C +      G II K      GYE ++    S+++   +   ++ AR +V D 
Sbjct: 363 HFLDSLKCRSV----HGVIIRK------GYESNELLLNSVIDAYAKCNLVELAR-MVFDG 411

Query: 601 PFKPDARVWGPLLSA 615
             K D   W  +++ 
Sbjct: 412 MNKKDVVAWSTMIAG 426


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 179/586 (30%), Positives = 306/586 (52%), Gaps = 3/586 (0%)

Query: 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF 162
           L +LSK G+ ++     K+M    +     +Y  +  +C  L     G  IH ++ +   
Sbjct: 59  LVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK 118

Query: 163 DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFK 222
           +    + + L+  Y  C    + +K   +   K+L S W  +IS   +NG+ EK+  LF 
Sbjct: 119 NPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVS-WVIVISAYAKNGELEKAIRLFS 177

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M+  G   +S   ++LL+S +    LELG+ +H   + +    +++V TA+ +MY +  
Sbjct: 178 DMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCG 237

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            LE AK++FD M  ++ V W  ++  Y Q+   + +LEL   M   G   D F     + 
Sbjct: 238 WLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLK 297

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
               +++ + GKQ+H+++++ G + +VSV   L+D Y +C D+  A + F  +     VS
Sbjct: 298 VCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS 357

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           WS++I G+    +  + +++F+ ++ EGV ++     ++  AC     L      HG ++
Sbjct: 358 WSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAI 417

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K GL S     +A+   Y+KCG ++ A   F  E ID  D + W ++IS YA HG+ ++ 
Sbjct: 418 KRGLVSYLYGESAMVTMYSKCGRLDYARRAF--ESIDEPDAVAWTAIISGYAYHGNAAEA 475

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
              + +M+   VRP+ +TF+ +LTAC ++GLV E +     M   YG +P+ +HY  M++
Sbjct: 476 LGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMID 535

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
              RAG + EA EL+  MPF+PDA  W  LL  C  H + +L ++ AE L  ++P +   
Sbjct: 536 TYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG 595

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
           Y+LL N+Y+A GKW     +R  + +R LKK   CSWI +   VH 
Sbjct: 596 YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHR 641



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 195/401 (48%), Gaps = 9/401 (2%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDS 74
           F    A+  RP+       SLL  C  P  L+   Q+H+ ++I   L+ N+ + + + + 
Sbjct: 176 FSDMQASGIRPNSAVY--MSLLQSCLGPSFLELGKQMHS-HVIRAQLNANITVETAICNM 232

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y   G L  ++ VF+ + + N++ +  ++   ++  + E  L ++ +MA++ +   E  +
Sbjct: 233 YVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVF 292

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V++ C  L D+  G++IH+ +VKLG +S   VG  LV+FY+KC G  E+      R  
Sbjct: 293 SIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKC-GDIESAYRSFGRIS 351

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +     W++LIS   Q+G+ E   ++F  +R EG   +S    ++ ++     +L +G  
Sbjct: 352 EPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQ 411

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
            H  A+       L   +A+++MYSK   L+ A+  F+ + + D V W  +IS Y   G 
Sbjct: 412 AHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGN 471

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GSDYQVSVHN 373
             E+L     M   G R +  T IA +++ S    +   KQ   ++ R+ G    +  ++
Sbjct: 472 AAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYD 531

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTH 413
            +ID Y     L  A ++ + +  +   +SW S++ G   H
Sbjct: 532 CMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAH 572


>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 204/643 (31%), Positives = 335/643 (52%), Gaps = 17/643 (2%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIHA+ I L G   ++   +NLI  Y   G L+   +VF  +   N + +  ++    + 
Sbjct: 97  QIHAQIIKL-GFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQN 155

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL--------LDFISGEKIHAQVVK-- 159
           GE+E  L VY +M    + P E     V ++C+ L        L+F  G +IH  +++  
Sbjct: 156 GEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVGNLNF--GRQIHGLIIQSE 213

Query: 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFE 219
           +GF +   V ++L++ Y K  GG    K   + + KD+ S WN++ +   Q   + +   
Sbjct: 214 VGFST--AVMNSLMDMYFKNGGGLYALKVFDRLQDKDIIS-WNTVFAGLSQGDDAREIGR 270

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279
            F  + + G + +  T   L R   E   L  G   HC+A       + SV ++L++M+S
Sbjct: 271 FFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSSLINMFS 330

Query: 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIA 339
           +  ++  A ++FD    K     N MIS Y  +    E+L L   +   G  AD  T  +
Sbjct: 331 RCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSS 390

Query: 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT 399
           A+ +    +N + G+QMH  ++++G   Q  V +SL+  Y     L+ + + F+ V+   
Sbjct: 391 ALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVERLD 450

Query: 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHG 459
           +VSW +MI   V    S EA+ L + +K  G + D     +I   C  I A    K +H 
Sbjct: 451 LVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHS 510

Query: 460 YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
             +K+G  +   V +A+  +YAKCG IE A  +FD+     +D+I +N+M+ AYA HG  
Sbjct: 511 LVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTS-RFRDVILFNTMVMAYAHHGLV 569

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
            +  + + +MK + + P   TF+ +++AC + GLVE+G I FK M   YG +PS ++Y  
Sbjct: 570 REAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGC 629

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639
           +V+L  R G +++A+ +++ MPF P   +W  LL+ C++H   EL E  A+KL+ + PEN
Sbjct: 630 LVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQLVPEN 689

Query: 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEI 682
              YVLLS +Y+  G W+  AK+R  + +RGL K PGCSWIEI
Sbjct: 690 DAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCSWIEI 732



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 224/501 (44%), Gaps = 16/501 (3%)

Query: 150 GEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISL 207
           G +IHAQ++KLGF  D F    + L+  Y KC       K   +   K+L S W  ++S 
Sbjct: 95  GSQIHAQIIKLGFCNDIFSQ--NNLIRMYTKCGFLAGGLKVFGEMPMKNLVS-WTLVVSG 151

Query: 208 AVQNGKSEKSFELFKLMRMEG---AEFDSGTLIN---LLRSTVELKSLELGRIVHCVAVV 261
           AVQNG+ E    ++  M   G    EF  G +      L   + + +L  GR +H + + 
Sbjct: 152 AVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVGNLNFGRQIHGLIIQ 211

Query: 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL 321
           S+     +V  +L+ MY K      A  +FD++ DKD + WN + +   Q    +E    
Sbjct: 212 SEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRF 271

Query: 322 LMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381
              ++ +G + +  T            ++  G Q H    R G   + SV +SLI+M+  
Sbjct: 272 FHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSSLINMFSR 331

Query: 382 CEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441
           C  +  A  +FDS   K++ + + MI GY  +  + EAL LF  +   G+E D  T  + 
Sbjct: 332 CGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSA 391

Query: 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
           L AC      +  + +HG  +K G  S   V +++   Y   G ++ + E F+   ++  
Sbjct: 392 LEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFN--GVERL 449

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561
           D+++W +MISA    G  S+   L  ++K++  +PD   F  +   C       + + + 
Sbjct: 450 DLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSV- 508

Query: 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621
             +    GYE      +++++   + G ++ AR +        D  ++  ++ A   H  
Sbjct: 509 HSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYAHHGL 568

Query: 622 TELAELTAE--KLISMEPENA 640
              A  T E  KL ++EP  A
Sbjct: 569 VREAVETFEKMKLATLEPSQA 589



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 189/424 (44%), Gaps = 41/424 (9%)

Query: 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           D   L   L  +   K + LG  +H   +   FC D+     L+ MY+K   L     +F
Sbjct: 75  DPTALSTALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVF 134

Query: 292 DKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT------AIAAVSSIS 345
            +M  K+ V W +++S   Q+G  +  L + + M+R+G   + F       A AA+    
Sbjct: 135 GEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCL 194

Query: 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405
            + N+ +G+Q+H  ++++   +  +V NSL+DMY +      A K+FD ++ K ++SW++
Sbjct: 195 VVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNT 254

Query: 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
           +  G    D + E  R F ++ L G++ + VT   +   C     L      H  + + G
Sbjct: 255 VFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFG 314

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           ++  +SV +++   +++CG + MA  +FD      K I T N MIS Y  +   ++   L
Sbjct: 315 ISDEASVTSSLINMFSRCGAMRMACLVFDSAPF--KSIHTCNEMISGYNLNCHNAEALNL 372

Query: 526 YTQMKQSDVRPDLITFLGLLTAC----------------VNAGLVEEGRII--------- 560
           +  +    +  D  TF   L AC                V +G   +G +          
Sbjct: 373 FCNLNGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVG 432

Query: 561 FKEMKESYGYEPSQEH-----YASMVNLLGRAGHMDEAREL---VKDMPFKPDARVWGPL 612
           F  + +S+ +    E      + +M++ L   G+  EA  L   +K+   KPD  ++G +
Sbjct: 433 FGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSI 492

Query: 613 LSAC 616
            + C
Sbjct: 493 FNCC 496



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 132/286 (46%), Gaps = 9/286 (3%)

Query: 324 CMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383
           C     FR D      A++  +  K I  G Q+HA +++ G    +   N+LI MY +C 
Sbjct: 66  CSSSLSFRNDPTALSTALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCG 125

Query: 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443
            L    K+F  +  K +VSW+ ++ G V + +    L ++ EM   G+  +   +  +  
Sbjct: 126 FLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTK 185

Query: 444 ACVNIGA------LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497
           AC  +G       L   + +HG  ++  +   ++V  ++   Y K G    A ++FD  +
Sbjct: 186 ACAALGGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFD--R 243

Query: 498 IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557
           +  KDII+WN++ +  ++  D  +  + + ++  + ++P+ +TF  L   C  A  +  G
Sbjct: 244 LQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSG 303

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
            + F  +   +G        +S++N+  R G M  A  +    PFK
Sbjct: 304 -LQFHCLAFRFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFK 348


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 295/517 (57%), Gaps = 13/517 (2%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WNSLI+  V+N + + +  LF+ M       D  TL  + + + E++ L LG+++H  ++
Sbjct: 95  WNSLINGYVKNHQFDNAIVLFRQMG-RCLLPDDYTLATISKVSGEIQDLVLGKLIHGKSL 153

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL- 319
              F  D+ V  +++SMY +     DA  +FD+M  ++   +N++IS     G    SL 
Sbjct: 154 RIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLY 213

Query: 320 ----ELLMCMVRSGFRADLFTAIAAVS-SISTMKNIEWGKQMHANVLRNGSDYQ----VS 370
                    M   G+ AD FT  + +     +    + G+++H  +++NG D +    V 
Sbjct: 214 ADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVH 273

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM-KLE 429
           + +SLIDMY     L  +R++FD +K++ +  W++MI GYV +     AL LF EM + +
Sbjct: 274 MGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKD 333

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            +  + V+++++LPAC  +  L   K +H +S+K+  N   S+  A+   YAKCG ++ A
Sbjct: 334 RIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYA 393

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549
             +FD     SKD ITW+S+ISAY  HG   +    Y +M Q  ++PD+IT +G+L+AC 
Sbjct: 394 RRVFDNGSY-SKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACC 452

Query: 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVW 609
            +GLV+EG  I+  +   Y  +PS E    +V+LLGR+G +D+A + +++MP  P   VW
Sbjct: 453 RSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPIIPGPSVW 512

Query: 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669
           G LL+A  +H  +   +L    L+ +EPEN  NY+ LSN YA++ +W+ + ++R+ +++R
Sbjct: 513 GSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVRSMMKER 572

Query: 670 GLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           GL+K PG SWI I    H F  AD+ HP + +IY +L
Sbjct: 573 GLRKVPGISWITISDKNHFFTVADKVHPSSSSIYEML 609



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 253/495 (51%), Gaps = 41/495 (8%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           QQ H++ I+ +   QN  L++ LI +YA  G   +S+ VF+S+ + N  L+ +++    K
Sbjct: 46  QQCHSQ-ILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVK 104

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             +++  +++++QM  + + P + T   + +    + D + G+ IH + +++GF S   V
Sbjct: 105 NHQFDNAIVLFRQMG-RCLLPDDYTLATISKVSGEIQDLVLGKLIHGKSLRIGFVSDIVV 163

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKS-----FE 219
           G++++  YI+C      E G   + F ++  R    +N +IS     G  + S     + 
Sbjct: 164 GNSVMSMYIRC-----REFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWN 218

Query: 220 LFKLMRMEGAEFDSGTLINLLRSTVELKS-LELGRIVHCVAVVSDF----CKDLSVNTAL 274
            F+ M+ +G   D+ T+ +LL    +     + GR +HC  V +      C D+ + ++L
Sbjct: 219 FFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSL 278

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG-FRAD 333
           + MYS+   L  ++ +FD+M  ++  VW  MI+ Y Q+G P+ +L L   M R    R +
Sbjct: 279 IDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPN 338

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             + ++ + +   +  +  GKQ+HA  ++   +  +S+ N+LIDMY +C  L+ AR++FD
Sbjct: 339 RVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFD 398

Query: 394 SVK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +   +K  ++WSS+I  Y  H +  EAL  + EM  +G++ D +T++ +L AC   G ++
Sbjct: 399 NGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVD 458

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI----EMAGEL-----FDEEKIDSKDI 503
                 G S+   L +   +  ++ I    CGC+      +G+L     F  E       
Sbjct: 459 -----EGISIYNSLTTEYEMKPSVEI----CGCVVDLLGRSGQLDQALDFIREMPIIPGP 509

Query: 504 ITWNSMISAYAKHGD 518
             W S+++A   HG+
Sbjct: 510 SVWGSLLTASVIHGN 524



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 211/411 (51%), Gaps = 19/411 (4%)

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           L++LL+ +++L SL+L +  H   + + F ++  + T L+S Y+       +K++FD + 
Sbjct: 29  LLHLLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVH 88

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS-TMKNIEWGK 354
            K+  +WN +I+ Y ++     ++ L   M R     D    +A +S +S  ++++  GK
Sbjct: 89  TKNVYLWNSLINGYVKNHQFDNAIVLFRQMGRCLLPDDY--TLATISKVSGEIQDLVLGK 146

Query: 355 QMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV--- 411
            +H   LR G    + V NS++ MY  C +   A K+FD +  + V S++ +I G     
Sbjct: 147 LIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALG 206

Query: 412 THDQSLEA--LRLFSEMKLEGVEVDFVTIINILPACVNI-GALEHVKYLHGYSMKLGLN- 467
             D SL A     F  M+ +G   D  T+ ++LP C +  G  +H + LH Y +K GL+ 
Sbjct: 207 NLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDL 266

Query: 468 ---SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524
              S   + +++   Y++   + ++  +FD+ K  S++I  W +MI+ Y ++G       
Sbjct: 267 KMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMK--SRNIYVWTAMINGYVQNGAPEGALI 324

Query: 525 LYTQMKQSD-VRPDLITFLGLLTAC-VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
           L+ +M++ D +RP+ ++ + +L AC +  GL+   ++    +K  +    S  +  ++++
Sbjct: 325 LFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRN--ALID 382

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLI 633
           +  + G +D AR +  +  +  DA  W  ++SA  +H + + A  T  +++
Sbjct: 383 MYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEML 433


>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
          Length = 824

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 210/692 (30%), Positives = 363/692 (52%), Gaps = 58/692 (8%)

Query: 35  SFSLLNLCENPQHLQ------QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF 88
           +F + N+C+    LQ       +H  Y+   GLH  + ++S+L D Y   G+L  +++VF
Sbjct: 165 NFVVPNVCKACGALQWSRFGRGVHG-YVAKAGLHDCVFVASSLADMYGKCGVLDDARKVF 223

Query: 89  NSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148
           + I   N + +  ++    + G  E+ + +   M  + + P   T    + + + +    
Sbjct: 224 DEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIE 283

Query: 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF--KDLKSRWNSLIS 206
            G++ HA  +  G +  + +G +++ FY  C  G  +   MI  +   KD+ + WN LIS
Sbjct: 284 EGKQSHAIAIVNGLELDNILGTSILNFY--CKVGLIDYAEMIFDRMIEKDVVT-WNLLIS 340

Query: 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266
             V  G  E +  + +LMR+E  +FD  TL  L+ +    ++L+LG+ V C  +   F  
Sbjct: 341 GYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFES 400

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D+ + +  + MY+K  S+ DAK +FD    KD ++WN +++AY +SG   E+L L   M 
Sbjct: 401 DIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQ 460

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
                 ++ T    + S+                LRNG                    +N
Sbjct: 461 LESVPPNVITWNLIILSL----------------LRNG-------------------QVN 485

Query: 387 CARKIFDSVKTK----TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442
            A+++F  +++      ++SW++M+ G V +  S EA+    +M+  G+  +  +I   L
Sbjct: 486 EAKEMFLQMQSSGTFPNMISWTTMMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVAL 545

Query: 443 PACVNIGALEHVKYLHGYSMKLGLNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSK 501
            ACVN+ +L   + +HGY ++   +S S S+ T++   YAKCG I  A  +F  +     
Sbjct: 546 SACVNLASLHFGRSIHGYIIRNQQHSSSASIETSLVDMYAKCGDINKAERVFGSKLYS-- 603

Query: 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNAGLVEEGRII 560
           ++  +N+MISAYA +G+  +   LY  +++   ++PD IT   +L+AC +AG + +   I
Sbjct: 604 ELPLYNAMISAYALYGNVKEAVALYRSLEEDVGIKPDNITITNVLSACNHAGDINQAIEI 663

Query: 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK-MH 619
           F +M   +G +P  EHY  MV+LL  AG  ++A  L+++MP+KPDAR+   L+++CK   
Sbjct: 664 FTDMVSKHGMKPCLEHYGLMVDLLASAGETEKALSLIEEMPYKPDARMIQSLVASCKKQQ 723

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
            ++EL +  + +L+  EPEN+GNYV +SN YA  G W+ V KMR  ++ +GLKK PGCSW
Sbjct: 724 HKSELMDYLSSQLLESEPENSGNYVRVSNAYAVEGSWDEVVKMREMMKVKGLKKKPGCSW 783

Query: 680 IEIG--KLVHEFWAADQSHPQADAIYTILGIL 709
           I++   + VH F A D +H + + I  IL +L
Sbjct: 784 IQVKGEEGVHVFVANDNTHLRNNEIRKILALL 815



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/529 (27%), Positives = 268/529 (50%), Gaps = 9/529 (1%)

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
           +P+S  Y   + +L K GE  + L +  +M  +++    + +  +++ C    D  +G++
Sbjct: 24  NPSSTSYFHRVSSLCKNGEIREALSLVTEMDFRNLRIGPEIFGEILQGCVYXRDLRTGQQ 83

Query: 153 IHAQVVKLG--FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQ 210
           IHA+++K G  +   + +   LV FY KCD     E    + + +++ S W ++I +  +
Sbjct: 84  IHARILKNGDFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFS-WAAIIGVKCR 142

Query: 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270
            G  E +   F  M   G   D+  + N+ ++   L+    GR VH     +     + V
Sbjct: 143 IGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFV 202

Query: 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330
            ++L  MY K   L+DA+ +FD++ +++ V WN ++  Y Q+G  +E++ LL  M + G 
Sbjct: 203 ASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGV 262

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
                T    +S+ + M+ IE GKQ HA  + NG +    +  S+++ YC+   ++ A  
Sbjct: 263 EPTRVTVSTCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEM 322

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
           IFD +  K VV+W+ +I GYV       A+ +   M+LE ++ D VT+  ++ A      
Sbjct: 323 IFDRMIEKDVVTWNLLISGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQN 382

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L+  K +  Y ++    S   + +     YAKCG +  A ++FD      KD+I WN+++
Sbjct: 383 LKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTV--QKDLILWNTLL 440

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           +AYA+ G   +  +L+ +M+   V P++IT+  ++ + +  G V E + +F +M+ S G 
Sbjct: 441 AAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSS-GT 499

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSAC 616
            P+   + +M+N L + G  +EA   ++ M     +P+       LSAC
Sbjct: 500 FPNMISWTTMMNGLVQNGCSEEAILFLRKMQESGMRPNVFSITVALSAC 548


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 204/692 (29%), Positives = 359/692 (51%), Gaps = 22/692 (3%)

Query: 37  SLLNLCENPQ-HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPN 95
           S+L  C N   +L       +I  G   +  ++++ ID Y   G L  +Q+ F+S  + +
Sbjct: 53  SILKACSNTSFNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKD 112

Query: 96  SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           S+ +  ++      G     L  + +       P   +   VI++   L  +  G   H 
Sbjct: 113 SVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHG 172

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR-----WNSLISLAVQ 210
            + + GF +   V ++L+  Y +    F        + F ++  R     W+ +I   VQ
Sbjct: 173 YIFRSGFSAILSVQNSLLSLYAEVHMYFA------HKLFGEMSVRNDVVSWSVMIGGFVQ 226

Query: 211 NGKSEKSFELFKLMRME-GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
            G+ E+ F +F+ M  E G   D  T++++L++   LK + LG +VH + +      DL 
Sbjct: 227 IGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLF 286

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V  +L+ MYSK  ++  A   F ++ +K+ + WN+M+SAY  +    E+L LL  MVR G
Sbjct: 287 VGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVREG 346

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              D  T    +       +    + +H  ++R G +    + NS+ID Y +C  +  AR
Sbjct: 347 AEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELAR 406

Query: 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449
            +FD +  K VV+WS+MI G+  + +  EA+ +F +M  E V  + V+I+N++ AC    
Sbjct: 407 MVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACAVSA 465

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L   K+ HG +++ GL S   + T+I   Y+KCG IE +   F++  I  K+++ W++M
Sbjct: 466 ELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQ--IPQKNVVCWSAM 523

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           ISA+  +G   +   L+ ++KQ+  +P+ +T L LL+AC + GL+EEG   F  M + +G
Sbjct: 524 ISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQKHG 583

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAEL 627
            EP  EHY+ +V++L RAG  +EA EL++ +P   +  A +WG LLS+C+ +    L   
Sbjct: 584 IEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSG 643

Query: 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVH 687
            A +++ +EP ++  Y+L SN+YA  G     AKMR   +++G+K   G S + I     
Sbjct: 644 AASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINSQTW 703

Query: 688 EFWAADQSHPQADAIYTIL----GILELEIME 715
            F A D  +P+AD IY ++    G+++++ ++
Sbjct: 704 RFVAGDVLNPRADEIYLMVKKLHGVMKIDCLK 735



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 196/435 (45%), Gaps = 31/435 (7%)

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLEL 251
           +  DL S+    I  A  +G  +++ +L+  +R+ GA+  D+  L ++L++     S  L
Sbjct: 11  RLSDLISK----IKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNL 65

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G  +H   +        S+  + +  Y K   L+ A+  FD   +KD V WN+M+   + 
Sbjct: 66  GTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFS 125

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           +G     L   +    + F+ ++ + +  + +   +K    G   H  + R+G    +SV
Sbjct: 126 NGSIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSV 185

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQSLEALRLFSEMKLE- 429
            NSL+ +Y E   +  A K+F  +  +  VVSWS MI G+V   +  +   +F  M  E 
Sbjct: 186 QNSLLSLYAEVH-MYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEA 244

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
           G+  D VT++++L AC N+  +     +HG  +  GL     V  ++   Y+KC  +  A
Sbjct: 245 GIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSA 304

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT--- 546
            + F E  I  K+II+WN M+SAY  +    +   L   M +     D +T   +L    
Sbjct: 305 FKAFKE--IPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAK 362

Query: 547 ------ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
                  C +      G II K      GYE ++    S+++   +   ++ AR +V D 
Sbjct: 363 HFLDSLKCRSV----HGVIIRK------GYESNELLLNSVIDAYAKCNLVELAR-MVFDG 411

Query: 601 PFKPDARVWGPLLSA 615
             K D   W  +++ 
Sbjct: 412 MNKKDVVAWSTMIAG 426


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 283/506 (55%), Gaps = 6/506 (1%)

Query: 224 MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
           M   GA  ++ T    ++S   L     G+ +HC    +    +  V T+L+SMY K + 
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 284 LEDAKMLFDK--MSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
           +++A+ LFD+   S K  V +N ++S Y  +   K+ + L   M   G   +  T +  V
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
                  N+  G  +H   ++ G D   SV N L+ MY +  +++C RK+FD +  K ++
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYS 461
           +W++MI GY  +  +   L L+ EM+ +G   D +T++ +L +C ++GAL   K +    
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQ 521
              G +S   +N A+   YA+CG ++ A ++FD   +  K +++W ++I  Y  HG    
Sbjct: 241 EGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPV--KSVVSWTAIIGGYGMHGQGEV 298

Query: 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581
              L+ +M +  ++PD   F+ +L+AC +AGL  +G   F  M+  YG  P  EHY+ MV
Sbjct: 299 AVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMV 358

Query: 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641
           +LLGRAG ++EAREL++ M  + D  +WG LL ACK+H   ELAEL  E++I +EP N G
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTG 418

Query: 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADA 701
            YVLLSN+Y  AG   G+ ++R  +R R LKK PGCS++E    VH F+A D++HPQ + 
Sbjct: 419 YYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNE 478

Query: 702 IYTILGILE--LEIMEGRRESSEELK 725
           IY  L  LE  ++ ++G +++  E +
Sbjct: 479 IYKKLNELENLVKDLDGCKKNDHERR 504



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 189/391 (48%), Gaps = 5/391 (1%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P   T+PF I+SC+ L   I+G+++H  V K G      V  +L+  Y KC    +N + 
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL-IDNARK 66

Query: 189 MIQR--KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           +     + + L   +NSL+S    N + +    LF  MR  G E +  T++ L++     
Sbjct: 67  LFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIP 126

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
            +L LG  VH   V      D SV   LL+MY K   ++  + LFD+M  K  + WN MI
Sbjct: 127 GNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMI 186

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           + Y Q+G     LEL   M   GF  D  T +  +SS + +  +  GK++   +   G  
Sbjct: 187 NGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFS 246

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
               ++N+L++MY  C +L  AR IFD +  K+VVSW+++I GY  H Q   A+ LF EM
Sbjct: 247 SNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEM 306

Query: 427 KLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
              G++ D    +++L AC + G   + + Y      K GL   +   + +     + G 
Sbjct: 307 IRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGR 366

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           +  A EL +  ++ + D   W +++ A   H
Sbjct: 367 LNEARELIESMQVRA-DGALWGALLGACKIH 396



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 89/210 (42%), Gaps = 5/210 (2%)

Query: 36  FSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92
             L+  C  P +L     +H  + +  GL  +  + + L+  Y   G +   +++F+ + 
Sbjct: 117 LGLVQPCGIPGNLGLGMCVHG-FCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMP 175

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
               + +  ++   ++ G     L +YK+M  +   P   T   V+ SC+ L     G++
Sbjct: 176 RKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE 235

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNG 212
           +  ++   GF S   + +ALV  Y +C G  +  + +           W ++I     +G
Sbjct: 236 VERKMEGFGFSSNPFLNNALVNMYARC-GNLKKARDIFDGMPVKSVVSWTAIIGGYGMHG 294

Query: 213 KSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
           + E +  LF  M   G + D    +++L +
Sbjct: 295 QGEVAVGLFDEMIRGGIKPDGTAFVSVLSA 324


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/490 (34%), Positives = 283/490 (57%), Gaps = 10/490 (2%)

Query: 231 FDSGTLINLLR-------STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS 283
            DSG L    R       +  + K+L+  R +H     S F  D  ++ +L+ +Y K  S
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGS 101

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           + +A  +FDKM +KD V W  +I+ Y Q+  P E++ LL  M++  F+ + FT  + + +
Sbjct: 102 VVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
           +    +   G Q+HA  ++      V V ++L+DMY  C  ++ A  +FD + +K  VSW
Sbjct: 162 VGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSW 221

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I G+        AL +F+EM+  G E    T  +I  A   IGALE  K++H + +K
Sbjct: 222 NALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIK 281

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
                 + V   +   YAK G +  A ++F  E++ +KD++TWNSM++A+A++G   +  
Sbjct: 282 SRQKLTAFVGNTMLDMYAKSGSMIDARKVF--ERVLNKDLVTWNSMLTAFAQYGLGKEAV 339

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
             + +M++S +  + I+FL +LTAC + GLV+EG+  F  +KE Y  EP  EHY ++V+L
Sbjct: 340 SHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVDL 398

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAG ++ A   +  MP +P A VWG LL+AC+MH   ++ +  A+ +  ++P+++G  
Sbjct: 399 LGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPP 458

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLL NIYA+ G W+  A++R  ++  G+KK P CSW+EI   VH F A D +HP+A+ IY
Sbjct: 459 VLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIY 518

Query: 704 TILGILELEI 713
            +   + ++I
Sbjct: 519 KMWDEISMKI 528



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 173/330 (52%), Gaps = 5/330 (1%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF--DSFDDVGDALVEFYIKCDGGFENE 186
           P    Y   I +C+   +     KIHA +    F  D+F D  ++L+  Y KC    E  
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLD--NSLIHLYCKCGSVVEAH 106

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
           K   + + KD+ S W SLI+   QN    ++  L   M     + +  T  +LL++    
Sbjct: 107 KVFDKMRNKDMVS-WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAY 165

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
               +G  +H +AV  D+ +D+ V +ALL MY++   ++ A  +FDK+  K+ V WN +I
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           S + + G  + +L +   M R+GF A  FT  +  S+++ +  +E GK +HA+++++   
Sbjct: 226 SGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQK 285

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
               V N+++DMY +   +  ARK+F+ V  K +V+W+SM+  +  +    EA+  F EM
Sbjct: 286 LTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEM 345

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKY 456
           +  G+ ++ ++ + IL AC + G ++  K+
Sbjct: 346 RKSGIYLNQISFLCILTACSHGGLVKEGKH 375



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 176/397 (44%), Gaps = 16/397 (4%)

Query: 28  PHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           P     H+F  +  C   ++L   ++IHA ++       +  L ++LI  Y   G +  +
Sbjct: 49  PTPRVYHAF--ITACAQSKNLDDARKIHA-HLASSRFAGDAFLDNSLIHLYCKCGSVVEA 105

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
            +VF+ + + + + + +++   ++     + + +   M      P   T+  ++++    
Sbjct: 106 HKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAY 165

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D   G +IHA  VK  +     VG AL++ Y +C      +  M    F  L S+    
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARC-----GKMDMATAVFDKLDSKNGVS 220

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+LIS   + G  E +  +F  M+  G E    T  ++  +   + +LE G+ VH   +
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMI 280

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S       V   +L MY+K  S+ DA+ +F+++ +KD V WN M++A+ Q G  KE++ 
Sbjct: 281 KSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M +SG   +  + +  +++ S    ++ GK     +     + ++  + +++D+  
Sbjct: 341 HFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLG 400

Query: 381 ECEDLNCARK-IFDSVKTKTVVSWSSMIKGYVTHDQS 416
               LN A   IF      T   W +++     H  +
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNA 437


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 281/489 (57%), Gaps = 10/489 (2%)

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290
           ++      +LRS V  +++  GR +H   +VS    D  + T L+ +Y+    +  A+ L
Sbjct: 61  YNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRL 120

Query: 291 FDKMSDKDRV-VWNIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMK 348
           FD+M ++  V +WN++I AY + G  + ++EL   M+  G    D FT    + + + + 
Sbjct: 121 FDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALL 180

Query: 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIK 408
           ++  G+++H  V+R      V V   LIDMY +C  ++ A  +FDS   +  V W+SMI 
Sbjct: 181 DLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIA 240

Query: 409 GYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468
               + +  EAL L   M  EG+    VT+++ + A  + GAL   + LHGY  + G  S
Sbjct: 241 ACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGS 300

Query: 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ 528
              + T++   YAK G + +A  LFD+  +  +++I+WN+MI  +  HG      +L+ +
Sbjct: 301 QDKLKTSLLDMYAKSGWVTVARVLFDQ--LFHRELISWNAMICGFGMHGHADHACELFRR 358

Query: 529 MK-QSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587
           M+ ++ V PD ITF+G+L+AC + G+V+E + +F  M   Y  +P  +HY  +V++LG +
Sbjct: 359 MRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHS 418

Query: 588 GHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647
           G   EA +++K M  KPD+ +WG LL+ CK+H   ELAEL   KLI +EPE+AGNYVLLS
Sbjct: 419 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLS 478

Query: 648 NIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILG 707
           NIYA +GKW   A++R  + +RGLKK   CSWIE+    H F   D SHP++D IY    
Sbjct: 479 NIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYE--- 535

Query: 708 ILELEIMEG 716
             ELE +EG
Sbjct: 536 --ELERLEG 542



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 172/341 (50%), Gaps = 23/341 (6%)

Query: 128 YP-AEDTYPFVIRSCSCLLDFISGEKIHAQ--VVKLGFDSFDDVGDALVEFYIKCDGGFE 184
           YP   + Y  ++RSC        G ++HA+  V  LG D+   +   LV+ Y  C     
Sbjct: 59  YPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAV--LATRLVDLYASC----- 111

Query: 185 NEKGMI---QRKFKDLKSR-----WNSLISLAVQNGKSEKSFELFKLMRMEGA-EFDSGT 235
              G++   +R F ++ ++     WN LI    ++G  E + EL++ M   G+ E D+ T
Sbjct: 112 ---GLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFT 168

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
              +L++   L  L  GR VH   + + +  D+ V   L+ MY+K   +++A  +FD  +
Sbjct: 169 YPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTT 228

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQ 355
            +D VVWN MI+A  Q+G P E+L L   M   G    + T ++A+S+ +    +  G++
Sbjct: 229 VRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRE 288

Query: 356 MHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415
           +H    R G   Q  +  SL+DMY +   +  AR +FD +  + ++SW++MI G+  H  
Sbjct: 289 LHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGH 348

Query: 416 SLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVK 455
           +  A  LF  M+ E  V  D +T + +L AC + G ++  K
Sbjct: 349 ADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAK 389



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 150/279 (53%), Gaps = 4/279 (1%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP-NSLLYGTILKNLS 107
           +Q+HAR +++ GL  + +L++ L+D YA+ GL+S+++++F+ + +  N  L+  +++  +
Sbjct: 83  RQLHAR-LLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYA 141

Query: 108 KFGEYEKTLLVYKQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
           + G  E  + +Y++M A  SM P   TYP V+++C+ LLD  +G ++H +V++  + +  
Sbjct: 142 RDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADV 201

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226
            V   L++ Y KC G  +    +           WNS+I+   QNG+  ++  L + M  
Sbjct: 202 FVCAGLIDMYAKC-GCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAA 260

Query: 227 EGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286
           EG      TL++ + +  +  +L  GR +H       F     + T+LL MY+K   +  
Sbjct: 261 EGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTV 320

Query: 287 AKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCM 325
           A++LFD++  ++ + WN MI  +   G    + EL   M
Sbjct: 321 ARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRM 359


>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 699

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 207/674 (30%), Positives = 350/674 (51%), Gaps = 24/674 (3%)

Query: 47  HLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNL 106
           +LQ  H    I  G   +L  S+NLI +Y+    L L+ Q+F+ +   +++ +  ++   
Sbjct: 17  YLQATHC-LAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGY 75

Query: 107 SKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD 166
               + + T  +   M +        T+   ++  +       G+++H+ ++K+  +   
Sbjct: 76  VNTADLDSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENV 135

Query: 167 DVGDALVEFYIKCDGGFENEKGMIQRKFKDLK-SRWNSLISLAVQNGKSEKSFELFKLMR 225
             G AL++ Y KC  G  ++  ++ R   +     WN+LI+   + G  + +F L +   
Sbjct: 136 FSGSALLDMYAKC--GRVDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQE 193

Query: 226 MEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285
           +EG   D GT+  LL     ++   L   +HC  V         V  A+++ YS+  SL+
Sbjct: 194 LEGVGIDDGTVSPLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQ 253

Query: 286 DAKMLFD---KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           DA+ +F     ++ +D V WN M++AY        + ++ + M   GF  D ++    +S
Sbjct: 254 DAERVFVGAVTVTCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVIS 313

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED--LNCARKIFDSVKTKTV 400
             S  ++   G+ +H  V++ G++  V V N+LI MY   ++  +  A +IF S+  K  
Sbjct: 314 GCSIKEHKSRGESLHGLVIKRGAEVSVPVSNALIAMYLGFDNRCMEDALRIFFSMDVKDC 373

Query: 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
            +W+S++ GYV   +S +ALRLF +++   VE+D  T   ++  C ++  L+  + +H  
Sbjct: 374 CTWNSVLAGYVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVL 433

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
           S+K+G ++    N  +     KC            E   + + I WNS+I  YA+HG  +
Sbjct: 434 SLKVGFDT----NKYVGKDAKKCF-----------ETTSNDNAIIWNSIIFGYAQHGQGN 478

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
              +L+  M++  V+PD ITF+ +LTAC + GLVEEGR I + M+  +G     EHYA  
Sbjct: 479 IALELFYLMREKKVKPDHITFVAVLTACSHNGLVEEGRKIIQSMESDFGIPLRMEHYACA 538

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V+L GRAG+++E + LV+ MPF+PDA V   LL AC+     ELA   A+ L+ +EPE+ 
Sbjct: 539 VDLYGRAGYLEEGKALVETMPFEPDAMVLRTLLGACRSCGNIELASHVAKMLLVLEPEDH 598

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQAD 700
             YVLLS++Y     W+  A +   +R+RG+KK PG SWIE+   VH F A D SHPQ+ 
Sbjct: 599 STYVLLSDLYGRLKMWDEKASVTRLMRERGVKKVPGWSWIEVKNKVHAFNAEDHSHPQSK 658

Query: 701 AIYTILGILELEIM 714
            IY +L  L+  IM
Sbjct: 659 EIYELLLQLKEGIM 672



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSM 509
            L +++  H  ++K G  S    +  +  +Y+KC  + +A +LFD  K+  +D ++WN++
Sbjct: 14  TLPYLQATHCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFD--KMPQRDTVSWNAV 71

Query: 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569
           IS Y    D    ++L   M+ S    D  TF   L     A  +E G+ +   M +   
Sbjct: 72  ISGYVNTADLDSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRL 131

Query: 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
            E      ++++++  + G +D+A  + + MP
Sbjct: 132 NENVFSG-SALLDMYAKCGRVDDALVVFRYMP 162


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 183/640 (28%), Positives = 333/640 (52%), Gaps = 3/640 (0%)

Query: 64  NLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMA 123
           ++ +++ L+++Y   G L+ +++VF+ +   +   + +++   S      +   ++++M 
Sbjct: 194 DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ 253

Query: 124 LQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGF 183
            +       T+  ++ +C        G+ +   + +  F+    VG AL+  Y +C    
Sbjct: 254 QEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPE 313

Query: 184 ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
           +  +   + K  +L + W+++I+    +G   ++   F++M+ EG   +  T I+LL   
Sbjct: 314 DAAQVFGRMKQTNLIT-WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 372

Query: 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN 303
                LE    +H +          ++  AL+++Y +  S +DA+ +FD++   + + WN
Sbjct: 373 TTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWN 432

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MI  Y Q     ++L+L   M + G + D    +  + + +   +    K +H  V  +
Sbjct: 433 SMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEES 492

Query: 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423
           G      V  SL++MY +  +L+ A  I   +  + + +W+ +I GY  H +S EAL  +
Sbjct: 493 GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAY 552

Query: 424 SEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483
            +++LE + VD VT I++L AC +  +L   K +H  +++ GL+S   V  A+   Y+KC
Sbjct: 553 QKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKC 612

Query: 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543
           G +E A  +FD   I S   ++WN M+ AYA+HG+  +  KL  +M+Q  V+ + ITF+ 
Sbjct: 613 GSMENARRIFDSMPIRSA--VSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVS 670

Query: 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603
           +L++C +AGL+ EG   F  +    G E   EHY  +V+LLGRAG + EA + +  MP +
Sbjct: 671 VLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLE 730

Query: 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663
           P    W  LL AC++  + +  +L A KL+ ++P N+   V+LSNIY+  G W   AK+R
Sbjct: 731 PGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLR 790

Query: 664 TFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
             +  R +KK PG S I++   VHEF   D SHP+A  IY
Sbjct: 791 RAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIY 830



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/559 (26%), Positives = 271/559 (48%), Gaps = 6/559 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y+  G L  +   F  I + N + +  ++   S +  +++ L ++  M L+ + P   T 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V+ SC    +   G  +HA  ++ GF     V  AL+  Y KC G   + + + +   
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKC-GTLLDAQSVFEEMA 120

Query: 195 KDLKSRWNSLISLAVQNGKSEK-SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
           +     WN+++ +    G   K + ELF  M +EG + +  T +N+L S V+  +L  G+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H     S+   D+ VNTAL++ Y+K  SL DA+ +FD M  +    WN MISAY  S 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
              E+  +   M + G R D  T ++ + +    + ++ GK +  ++     +  + V  
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGT 300

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEV 433
           +LI MY  C     A ++F  +K   +++WS++I  +  H    EALR F  M+ EG+  
Sbjct: 301 ALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILP 360

Query: 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493
           + VT I++L        LE +  +H    + GL+  +++  A+   Y +C   + A  +F
Sbjct: 361 NRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVF 420

Query: 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553
           D+  ++  ++I+WNSMI  Y +        +L+  M+Q  ++PD + F+ +L AC     
Sbjct: 421 DQ--LELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSH 478

Query: 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613
               +++ + ++ES G   S     S+VN+  +AG +D A  ++++M  +     W  L+
Sbjct: 479 GRTRKLVHQCVEES-GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLI 536

Query: 614 SACKMHSETELAELTAEKL 632
           +   +H  +  A    +KL
Sbjct: 537 NGYALHGRSREALEAYQKL 555



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 237/489 (48%), Gaps = 23/489 (4%)

Query: 36  FSLLNLCENPQHLQQ-IHARYIILH-GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
            S+L+ C NP+ LQ   H R  I       +L + + LI  YA       + QVF  +  
Sbjct: 265 LSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQ 324

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            N + +  I+   +  G   + L  ++ M  + + P   T+  ++   +         +I
Sbjct: 325 TNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRI 384

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGK 213
           H  + + G D    + +ALV  Y +C+   +      Q +  +L S WNS+I + VQ  +
Sbjct: 385 HLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLIS-WNSMIGIYVQCER 443

Query: 214 SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA 273
            + + +LF+ M+ +G + D    + +L +          ++VH     S       V T+
Sbjct: 444 HDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTS 503

Query: 274 LLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333
           L++MY+K   L+ A+++  +M ++    WN++I+ Y   G  +E+LE    +       D
Sbjct: 504 LVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVD 563

Query: 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFD 393
             T I+ +++ ++  ++  GK +H+N +  G D  V V N+L +MY +C  +  AR+IFD
Sbjct: 564 KVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFD 623

Query: 394 SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-E 452
           S+  ++ VSW+ M++ Y  H +S E L+L  +M+ EGV+++ +T +++L +C + G + E
Sbjct: 624 SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAE 683

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC----IEMAGELFDEEKIDSK-----DI 503
             +Y H      G+     V T  +      GC    +  AG+L + EK  SK      I
Sbjct: 684 GCQYFHSLGHDRGIE----VKTEHY------GCLVDLLGRAGKLQEAEKYISKMPLEPGI 733

Query: 504 ITWNSMISA 512
           +TW S++ A
Sbjct: 734 VTWASLLGA 742



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 205/402 (50%), Gaps = 10/402 (2%)

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MYS+  SL DA   F K+  ++ V WN+MISAY      +E+L L   M+  G   +  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            +A ++S  + + +  G  +HA  L  G      V  +L++MY +C  L  A+ +F+ + 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 397 TKTVVSWSSMIKGYVTHDQSLE-ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
            K VV+W++M+  Y       + A+ LF+ M LEGV+ + +T +N+L + V+  AL   K
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 456 YLHGYSMKLGLNSLSS-VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYA 514
           ++H   ++   +SL   VNTA+  +Y KCG +  A ++FD   +  + + TWNSMISAY+
Sbjct: 181 FIHS-CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFD--GMPCRSVGTWNSMISAYS 237

Query: 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574
                 + F ++ +M+Q   R D +TFL +L ACVN   ++ G+ + + + E+  +E   
Sbjct: 238 ISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET-SFELDL 296

Query: 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634
               +++ +  R    ++A ++   M  + +   W  +++A   H     A L   +++ 
Sbjct: 297 FVGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEA-LRYFRMMQ 354

Query: 635 MEP--ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKT 674
            E    N   ++ L N +        ++++   + + GL  T
Sbjct: 355 QEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDT 396


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 175/478 (36%), Positives = 273/478 (57%), Gaps = 6/478 (1%)

Query: 242 STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--DR 299
           +T  L S+ +G  +H ++V      D  V  +L++MYS  +    A+ + D       D 
Sbjct: 102 ATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGACDT 161

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
           V WN +IS Y + G P ++L+    MV+     D  T + A+ + +    ++ G+  H+ 
Sbjct: 162 VSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSL 221

Query: 360 VLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419
           V+ NG+     + +SLI MY +C  +  ARK+F  +  + VV W+SMI GY    +  EA
Sbjct: 222 VVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEA 281

Query: 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           + LF +M++ G++VD  TI  ++ +C  +GAL+  +Y+H Y    GL    SV  ++   
Sbjct: 282 VNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDM 341

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMK-QSDVRPDL 538
           Y+KCG I  A E+F    +  +D+ +W +MI  +  +G  S+   L+ QM+ +  V P+ 
Sbjct: 342 YSKCGDINKAHEIFC--GLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNE 399

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           +TFLG+LT+C + GLVE+G   F+ M   Y   P  EHY  MV+LLGRA  + EA + +K
Sbjct: 400 VTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKLLTEAEQFIK 459

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +MP  PD  VW  LL AC+   E  LAE  AE+++ +EP+    +VLLSN+YA   +W  
Sbjct: 460 NMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNVYATTSRWVD 519

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI-LGILELEIME 715
           V ++RT + +  + K PGCS+IE+   VHEF+A D+SH + +AIY I LGI EL + E
Sbjct: 520 VNELRTSMDNSRMSKQPGCSFIEVDGCVHEFFAGDESHLETEAIYNILLGISELLVAE 577



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 230/464 (49%), Gaps = 37/464 (7%)

Query: 74  SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDT 133
           S+ ++ LL LSQ + + +     L++ ++L++LS  G +    L +  +   S Y   D 
Sbjct: 37  SHCHIPLL-LSQSIVSGLLLKLPLVH-SVLRSLS-LGPFPSLSLSFLSLLRHSGYVTLDN 93

Query: 134 YPFVIR-SCSCLLDFIS-GEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQ 191
           Y   I  S +  L  +S G ++H+  VKLG  S   V ++L+  Y  C            
Sbjct: 94  YSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCS------YPATA 147

Query: 192 RKFKDLKSR-------WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244
           R+  D   +       WN++IS  ++ G   K+ + F  M  E    D  TL+N L ++ 
Sbjct: 148 RQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASA 207

Query: 245 ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNI 304
           +   +++GR+ H + VV+    +  + ++L+SMY+K   +EDA+ +F  M +++ V W  
Sbjct: 208 KAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTS 267

Query: 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG 364
           MIS Y Q G  KE++ L   M  +G + D  T    VSS + M  ++ G+ +HA    +G
Sbjct: 268 MISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHG 327

Query: 365 SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFS 424
              ++SV NSLIDMY +C D+N A +IF  +  + V SW++MI G+  +    EAL LF+
Sbjct: 328 LGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFA 387

Query: 425 EMKLEG-VEVDFVTIINILPACVNIGALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAK 482
           +M+ EG V  + VT + +L +C + G +E    Y    SM   L        A  I +  
Sbjct: 388 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKL--------APRIEHYG 439

Query: 483 CGCIEMAG--------ELFDEEKIDSKDIITWNSMISAYAKHGD 518
           C  +++ G        E F +    + D++ W S++ A    G+
Sbjct: 440 C-MVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGE 482



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 56  IILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKT 115
           ++++G   N  + S+LI  YA  GL+  +++VF+ +   N + + +++   ++ G++++ 
Sbjct: 222 VVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEA 281

Query: 116 LLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEF 175
           + +++ M +  M   + T   V+ SC+ +     G  +HA     G      V ++L++ 
Sbjct: 282 VNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDM 341

Query: 176 YIKC---DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           Y KC   +   E   G+ +R   D+ S W ++I     NG   ++ +LF  M  EG
Sbjct: 342 YSKCGDINKAHEIFCGLTKR---DVFS-WTAMIMGFTVNGLCSEALDLFAQMEGEG 393



 Score = 40.4 bits (93), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 51  IHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFG 110
           +HA Y  +HGL + L + ++LID Y+  G ++ + ++F  +T  +   +  ++   +  G
Sbjct: 319 VHA-YCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNG 377

Query: 111 EYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF 165
              + L ++ QM  +  + P E T+  V+ SCS           H  +V+ GF  F
Sbjct: 378 LCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCS-----------HGGLVEQGFHYF 422


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 267/447 (59%), Gaps = 2/447 (0%)

Query: 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV 326
           D++++  L++ YSK   +E A+ +FD M ++  V WN MI  Y ++    E+L++   M 
Sbjct: 97  DVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMR 156

Query: 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386
             GF+   FT  + +S+     +    K++H   ++   D  + V  +L+D+Y +C  +N
Sbjct: 157 NEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMIN 216

Query: 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV 446
            A ++F+S++ K+ V+WSSM+ GYV      EAL L+   +   +E +  T+ +++ AC 
Sbjct: 217 DAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 276

Query: 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506
           N+ AL   K +H    K G  S   V ++    YAKCG +  +  +F E  +  K+I  W
Sbjct: 277 NLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSE--VQEKNIELW 334

Query: 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
           N++IS +AKH    +   L+ +M+Q  + P+ +TF  LL+ C + GLVEEGR  FK M+ 
Sbjct: 335 NTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRT 394

Query: 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626
           +YG  P+  HY+ MV++LGRAG + EA EL+K +PF+P A +WG LL++C++    ELAE
Sbjct: 395 TYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAE 454

Query: 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686
           + A+KL  +EPENAGN+VLLSNIYAA  +W  +AK R  LRD  +KK  G SWI+I   V
Sbjct: 455 VAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKV 514

Query: 687 HEFWAADQSHPQADAIYTILGILELEI 713
           H F   + SHP+   I T+L  L +E+
Sbjct: 515 HIFRVGESSHPRIREICTMLDNLVIEL 541



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 180/358 (50%), Gaps = 13/358 (3%)

Query: 101 TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKL 160
           ++ +N+S F  YE+  L   + + +        +  +++ C+     +  +  H + +++
Sbjct: 33  SLSRNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRM 92

Query: 161 GFDSFDDVGDALVEFYIKCDGGF-----ENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
                  + + L+  Y KC  GF     +   GM++R        WN++I L  +N    
Sbjct: 93  ELQGDVTLSNVLINAYSKC--GFVELARQVFDGMLERSLVS----WNTMIGLYTRNRMES 146

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRST-VELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274
           ++ ++F  MR EG +F   T+ ++L +      +LE  ++ HC+++ +    +L V TAL
Sbjct: 147 EALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKL-HCLSMKTSLDLNLYVGTAL 205

Query: 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL 334
           L +Y+K   + DA  +F+ M DK  V W+ M++ Y QS   +E+L L     R     + 
Sbjct: 206 LDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQ 265

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
           FT  + + + S +  +  GKQMHA + ++G    V V +S +DMY +C  L  +  IF  
Sbjct: 266 FTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSE 325

Query: 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           V+ K +  W+++I G+  H +  E + LF +M+ +G+  + VT  ++L  C + G +E
Sbjct: 326 VQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE 383



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 175/351 (49%), Gaps = 7/351 (1%)

Query: 61  LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYK 120
           L  ++ LS+ LI++Y+  G + L++QVF+ +   + + + T++   ++     + L ++ 
Sbjct: 94  LQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFW 153

Query: 121 QMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCD 180
           +M  +    +E T   V+ +C    D +  +K+H   +K   D    VG AL++ Y KC 
Sbjct: 154 EMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKC- 212

Query: 181 GGFENEKGMIQRKFKDLKS-RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239
            G  N+   +    +D  S  W+S+++  VQ+   E++  L++  +    E +  TL ++
Sbjct: 213 -GMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSV 271

Query: 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDR 299
           + +   L +L  G+ +H V   S F  ++ V ++ + MY+K  SL ++ ++F ++ +K+ 
Sbjct: 272 ICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNI 331

Query: 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359
            +WN +IS + +   PKE + L   M + G   +  T  + +S       +E G++    
Sbjct: 332 ELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF-K 390

Query: 360 VLRN--GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI 407
           ++R   G    V  ++ ++D+      L+ A ++  S+  +   S W S++
Sbjct: 391 LMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLL 441



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI 498
           I IL  C   GA+   K  HG +M++ L    +++  +  +Y+KCG +E+A ++FD   +
Sbjct: 67  IEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFD--GM 124

Query: 499 DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC-VNAGLVEEG 557
             + +++WN+MI  Y ++   S+   ++ +M+    +    T   +L+AC  N   +E  
Sbjct: 125 LERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECK 184

Query: 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617
           ++    MK S   + +     ++++L  + G +++A ++ + M  K     W  +++   
Sbjct: 185 KLHCLSMKTS--LDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSV-TWSSMVAGYV 241

Query: 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV---AKMRTFLRDRGL 671
                E A L   +   M  E   N   LS++  A      +    +M   +R  G 
Sbjct: 242 QSKNYEEALLLYRRAQRMSLEQ--NQFTLSSVICACSNLAALIEGKQMHAVIRKSGF 296



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S++  C N   L   +Q+HA  I   G   N+ ++S+ +D YA  G L  S  +F+ +  
Sbjct: 270 SVICACSNLAALIEGKQMHA-VIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQE 328

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141
            N  L+ TI+   +K    ++ ++++++M    M+P E T+  ++  C
Sbjct: 329 KNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC 376


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 271/468 (57%), Gaps = 3/468 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +++ +  + K+L   R +H     S    D  +  +L+ MY K  ++ DA+ +FD +  +
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTR 126

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +I+ Y Q+  P E+L LL  M+R+ FR   FT  + + +         G+QMH
Sbjct: 127 DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMH 186

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++   D  V V ++L+DMY  C+ ++ A ++FD + +K  VSW+++I G+       
Sbjct: 187 ALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGE 246

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
             L  F+EM+  G      T  ++  A   IGALE  +++H + +K G    + V   I 
Sbjct: 247 TTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTIL 306

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G +  A ++FD  ++D +D++TWN+M++A+A++G   +    + ++++  ++ +
Sbjct: 307 GMYAKSGSMVDARKVFD--RVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITFL +LTAC + GLV+EG+  F  MK+ Y  EP  +HY S V+LLGRAG + EA   V
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
             MP +P A VWG LL AC+MH   ++ +  A+ +  ++PE+ G  VLL NIYA+ G+W+
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
             A++R  ++  G+KK P CSW+EI   VH F A D +HP+++ IY +
Sbjct: 484 DAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRM 531



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 182/371 (49%), Gaps = 18/371 (4%)

Query: 91  ITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISG 150
           + +P S   G    + S  G  E  LL+  ++A     P    Y  +I +C+   +    
Sbjct: 27  LAAPFSFPSGPACSSSSSSGLRELDLLLTGELA-----PTPRVYHSIITACAQSKNLAGA 81

Query: 151 EKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSL 204
             IH+ + +  L  D F  + ++L+  Y KC G   + + +    F  + +R    W  L
Sbjct: 82  RAIHSHLSRSRLAGDGF--LLNSLIHMYCKC-GAVSDARHV----FDGIPTRDVVSWTYL 134

Query: 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDF 264
           I+   QN    ++  L   M          T  + L++        +G  +H +AV  + 
Sbjct: 135 ITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNL 194

Query: 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC 324
            +D+ V +ALL MY++   ++ A  +FD +  K+ V WN +I+ + + G  + +L     
Sbjct: 195 DEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAE 254

Query: 325 MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384
           M R+GF A  FT  +  S+++ +  +E G+ +HA+++++G      V N+++ MY +   
Sbjct: 255 MQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGS 314

Query: 385 LNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444
           +  ARK+FD V  + +V+W++M+  +  +    EA+  F E++  G++++ +T +++L A
Sbjct: 315 MVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTA 374

Query: 445 CVNIGALEHVK 455
           C + G ++  K
Sbjct: 375 CSHGGLVKEGK 385



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 165/356 (46%), Gaps = 20/356 (5%)

Query: 37  SLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS 93
           S++  C   ++L   + IH+ ++    L  +  L ++LI  Y   G +S ++ VF+ I +
Sbjct: 67  SIITACAQSKNLAGARAIHS-HLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPT 125

Query: 94  PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153
            + + +  ++   ++     + L +   M      P+  T+   +++         GE++
Sbjct: 126 RDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQM 185

Query: 154 HAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAV 209
           HA  VK   D    VG AL++ Y +C      +  M  R F  L S+    WN+LI+   
Sbjct: 186 HALAVKYNLDEDVYVGSALLDMYARC-----QQMDMAIRVFDWLDSKNEVSWNALIAGFA 240

Query: 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS 269
           + G  E +   F  M+  G      T  ++  +   + +LE GR VH   + S       
Sbjct: 241 RKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAF 300

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           V   +L MY+K  S+ DA+ +FD++  +D V WN M++A+ Q G  KE++     + + G
Sbjct: 301 VANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYG 360

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDL 385
            + +  T ++ +++ S    ++ GKQ + ++++   DY V      ID Y    DL
Sbjct: 361 IQLNQITFLSVLTACSHGGLVKEGKQ-YFDMMK---DYNVEPE---IDHYVSFVDL 409


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/612 (32%), Positives = 315/612 (51%), Gaps = 61/612 (9%)

Query: 151 EKIHAQVVKLGFDSFDDVGDALVEFYI--------KCDGGFENEKGMIQRKFKDLKSRWN 202
           ++IHAQ++  G  S       LV F           CD    N   +    F      WN
Sbjct: 71  KEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL--NXFS-----WN 123

Query: 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE------LGRIVH 256
             I   V++     +  L++ M  +G+         LL       SL       LG ++ 
Sbjct: 124 MAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQ 183

Query: 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK 316
                  F  DL V+ A++ +      L  A+ LFD+   +D V WN +I+ Y + G   
Sbjct: 184 L-----GFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLAD 238

Query: 317 ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLI 376
           E+ +L   M       D  T I  VS+ + ++N+  G+++H ++   G +  V + N+L+
Sbjct: 239 EAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALM 298

Query: 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY-------------------------- 410
           DMY +C+++  A+ +F+++  KTVVSW++M+ GY                          
Sbjct: 299 DMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNA 358

Query: 411 -----VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465
                V   +S EAL LF EM+   V  D +T++N L AC  +GAL+   ++H Y  K  
Sbjct: 359 LIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHN 418

Query: 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525
           L    ++ TA+   YAKCG I+ A ++F+E  +  ++ +TW ++I   A HG        
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEE--MPGRNSLTWTAIICGLALHGQPHAAISY 476

Query: 526 YTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585
           +++M    + PD ITF+G+L+AC + GLV++GR  F +M   YG  P  +HY+ +V+LLG
Sbjct: 477 FSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLG 536

Query: 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645
           RAG ++EA EL++ MPF+PDA VWG L    ++H    + E  A KL+ ++P + G YVL
Sbjct: 537 RAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVL 596

Query: 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTI 705
           L+N+Y  A  W    K+R  + +RG++KTPGCS IE+  LV++F   D+SHPQ++ IY  
Sbjct: 597 LANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYEC 656

Query: 706 LGIL--ELEIME 715
           L  L  ++E++E
Sbjct: 657 LTRLTRQIEVIE 668



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 140/584 (23%), Positives = 266/584 (45%), Gaps = 45/584 (7%)

Query: 22  PANQTRPH--MTATHSFSLLNLCENPQHLQQIHARYI----ILHGLHQNLILSSNLIDSY 75
           P N    H  + +    SLL  C +   +++IHA+ I    I  G   + +++   I  +
Sbjct: 42  PTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEW 101

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTY 134
            NL       ++ N+  + N   +   ++   +       +L+Y+ M  + S  P   TY
Sbjct: 102 RNL---DYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTY 158

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P + + C+      +  +I   V++LGFDS   V +A++   + C       K   +   
Sbjct: 159 PLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV 218

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +DL S WNS+I+  V+ G ++++F+L+  M       D  T+I ++ ++ +L++L LGR 
Sbjct: 219 RDLVS-WNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRK 277

Query: 255 VH----------CVAVVSDF------CKDLSVN---------------TALLSMYSKLAS 283
           +H           V + +        CK++                  T ++  Y+K   
Sbjct: 278 LHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGL 337

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LE A  LF++M +KD V+WN +I  + Q+   KE+L L   M  S    D  T +  +S+
Sbjct: 338 LESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSA 397

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            S +  ++ G  MH  V ++     V++  +L+DMY +C ++  A ++F+ +  +  ++W
Sbjct: 398 CSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSM 462
           +++I G   H Q   A+  FSEM   G+  D +T I +L AC + G ++  + Y +  + 
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K G++      + +     + G +E A EL      +  D + W ++      HG+    
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFE-PDAVVWGALFFGSRIHGNVHMG 576

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            +  +++ + D     I  L L     +A + E+ R + K M+E
Sbjct: 577 ERAASKLLELDPHDGGIYVL-LANMYGDANMWEQARKVRKMMEE 619


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 298/538 (55%), Gaps = 9/538 (1%)

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
            Y  ++R C    +  +G+KIH  VVK G+     VG+ LV+ Y KC G  E+ K +   
Sbjct: 72  AYGNLLRDCG---ELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKC-GSLEDAKKVFDG 127

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
             +     W+ +I+  V++G + ++ +L+K M ++   F    ++N   S++  ++LE+G
Sbjct: 128 MRRRDSISWSKMIAGYVRHGLAREAIKLYKAMAIDPDGFTFSAVLNAC-SSLGPRALEVG 186

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H          D+ V++AL++M++K  SL++++ +FD    KD + WN MI AY QS
Sbjct: 187 KEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQS 246

Query: 313 GFPKESLELLMCMVRSG--FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS 370
           G P+E++EL   M  S      +  T    +++ S ++++E GK++H  ++  G  +  +
Sbjct: 247 GHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAA 306

Query: 371 VHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430
             NSL++MY +C  +  AR++FD +K +TVVSW+ +I  YV      EAL L+ +M  EG
Sbjct: 307 AENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEG 366

Query: 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490
           VE + +T  ++L AC ++GALE  K +H      G     +V  A+   Y KCG ++ A 
Sbjct: 367 VEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSAR 426

Query: 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550
           ++FD  KI  +++++W +MISAYA H    +  +LY  M    V+     +  +LTAC  
Sbjct: 427 KVFDRMKI--RNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQ 484

Query: 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610
           AGL+E  R  F  +    G     E Y  M  +LGRAG + EA EL+  MPF+ +   W 
Sbjct: 485 AGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWM 544

Query: 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668
            LL+ACK H++ E     AE L  +EP N   YVLLSNIY AAG+    A++R  + D
Sbjct: 545 GLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKMGD 602



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/569 (26%), Positives = 273/569 (47%), Gaps = 48/569 (8%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +LL  C      ++IH  +++ +G ++N+ + ++L+  Y+  G L  +++VF+ +   +S
Sbjct: 75  NLLRDCGELAAGKKIH-EHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDS 133

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL--LDFISGEKIH 154
           + +  ++    + G   + + +YK MA+    P   T+  V+ +CS L       G++IH
Sbjct: 134 ISWSKMIAGYVRHGLAREAIKLYKAMAID---PDGFTFSAVLNACSSLGPRALEVGKEIH 190

Query: 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKS 214
           A + ++       V  ALV  + KC    E+ +     ++KD+   WNS+I    Q+G  
Sbjct: 191 AHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLF-WNSMIVAYSQSGHP 249

Query: 215 EKSFELFKLMRMEG--AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272
            ++ ELFK M       E ++ T   +L +   ++ LE G+ VH   V + F  D +   
Sbjct: 250 REAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAEN 309

Query: 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332
           +L++MY+K  S+ +A+ +FD M  +  V W  +ISAY + G P+E+L+L   M   G   
Sbjct: 310 SLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEP 369

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
           +  T  + +S+ S++  +E GK +HA +   G    ++V N+L+ +Y +C  ++ ARK+F
Sbjct: 370 NGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVF 429

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D +K + VVSW++MI  Y  H  S EA++L+  M LEGV+        +L AC   G LE
Sbjct: 430 DRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLE 489

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             ++  G   +                   CG      +L D           +  M + 
Sbjct: 490 SARHYFGCLTR------------------DCGA---PAKLED-----------YVCMATV 517

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
             + G  ++  +L   M       + + ++GLL AC     VE G  + + +   +  EP
Sbjct: 518 LGRAGRLAEAEELLAVMP---FEAEFVAWMGLLAACKAHNDVERGARVAEVL---FRLEP 571

Query: 573 SQEH-YASMVNLLGRAGHMDEARELVKDM 600
             E  Y  + N+   AG  +EA  + + M
Sbjct: 572 LNEAPYVLLSNIYVAAGRQEEAARVRRKM 600


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 297/554 (53%), Gaps = 46/554 (8%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE------LGRI 254
           WN  I   V++     +  L++ M  +G+         LL       SL       LG +
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHV 181

Query: 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314
           +        F  DL V+ A++ +      L  A+ LFD+   +D V WN +I+ Y + G 
Sbjct: 182 IQL-----GFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGL 236

Query: 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNS 374
             E+ +L   M       D  T I  VS+ + ++N+  G+++H ++   G +  V + N+
Sbjct: 237 ADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANA 296

Query: 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY------------------------ 410
           L+DMY +C+++  A+ +F+++  KTVVSW++M+ GY                        
Sbjct: 297 LMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLW 356

Query: 411 -------VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
                  V   +S EAL LF EM+   V  D +T++N L AC  +GAL+   ++H Y  K
Sbjct: 357 NALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDK 416

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523
             L    ++ TA+   YAKCG I+ A ++F+E  +  ++ +TW ++I   A HG      
Sbjct: 417 HNLTMNVALGTALVDMYAKCGNIKKAIQVFEE--MPGRNSLTWTAIICGLALHGQPHAAI 474

Query: 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583
             +++M    + PD ITF+G+L+AC + GLV++GR  F +M   YG  P  +HY+ +V+L
Sbjct: 475 SYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDL 534

Query: 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643
           LGRAG ++EA EL++ MPF+PDA VWG L    ++H    + E  A KL+ ++P + G Y
Sbjct: 535 LGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594

Query: 644 VLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIY 703
           VLL+N+Y  A  W    K+R  + +RG++KTPGCS IE+  LV++F   D+SHPQ++ IY
Sbjct: 595 VLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654

Query: 704 TILGIL--ELEIME 715
             L  L  ++E++E
Sbjct: 655 ECLTRLTRQIEVIE 668



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/584 (23%), Positives = 266/584 (45%), Gaps = 45/584 (7%)

Query: 22  PANQTRPH--MTATHSFSLLNLCENPQHLQQIHARYI----ILHGLHQNLILSSNLIDSY 75
           P N    H  + +    SLL  C +   +++IHA+ I    I  G   + +++   I  +
Sbjct: 42  PTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEW 101

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTY 134
            NL       ++ N+  + N   +   ++   +       +L+Y+ M  + S  P   TY
Sbjct: 102 RNL---DYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTY 158

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           P + + C+      +  +I   V++LGFDS   V +A++   + C       K   +   
Sbjct: 159 PLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV 218

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           +DL S WNS+I+  V+ G ++++F+L+  M       D  T+I ++ ++ +L++L LGR 
Sbjct: 219 RDLVS-WNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRK 277

Query: 255 VH----------CVAVVSDF------CKDLSVN---------------TALLSMYSKLAS 283
           +H           V + +        CK++                  T ++  Y+K   
Sbjct: 278 LHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGL 337

Query: 284 LEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           LE A  LF++M +KD V+WN +I  + Q+   KE+L L   M  S    D  T +  +S+
Sbjct: 338 LESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSA 397

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
            S +  ++ G  MH  V ++     V++  +L+DMY +C ++  A ++F+ +  +  ++W
Sbjct: 398 CSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTW 457

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSM 462
           +++I G   H Q   A+  FSEM   G+  D +T I +L AC + G ++  + Y +  + 
Sbjct: 458 TAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K G++      + +     + G +E A EL      +  D + W ++      HG+    
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFE-PDAVVWGALFFGSRIHGNVHMG 576

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566
            +  +++ + D     I  L L     +A + E+ R + K M+E
Sbjct: 577 ERAASKLLELDPHDGGIYVL-LANMYGDANMWEQARKVRKMMEE 619



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 178/394 (45%), Gaps = 46/394 (11%)

Query: 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG------FRA 332
           S+  +L+    + +  ++ +   WN+ I  Y +S  P  ++ L   M+R G      +  
Sbjct: 99  SEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTY 158

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIF 392
            L   + A  S+S   N     ++  +V++ G D  + VHN++I +   C +L  ARK+F
Sbjct: 159 PLLFKVCAGFSLSWTAN-----EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLF 213

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           D    + +VSW+S+I GYV    + EA  L+ +M    V  D VT+I ++ A   +  L 
Sbjct: 214 DESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLA 273

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + LH    ++GLN    +  A+   Y KC  IE A  LF  E +  K +++W +M+  
Sbjct: 274 LGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILF--ENMTKKTVVSWTTMVIG 331

Query: 513 YAKHGDWSQCFKLYTQMKQSD-------------------------------VRPDLITF 541
           YAK G      +L+ +M + D                               V PD IT 
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391

Query: 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601
           +  L+AC   G ++ G I      + +    +     ++V++  + G++ +A ++ ++MP
Sbjct: 392 VNCLSACSQLGALDVG-IWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP 450

Query: 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISM 635
            + ++  W  ++    +H +   A     ++IS+
Sbjct: 451 GR-NSLTWTAIICGLALHGQPHAAISYFSEMISI 483


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 281/491 (57%), Gaps = 10/491 (2%)

Query: 230 EFDSGTLINLLR-------STVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
             DSG L    R       +  + K+L+  R +H     S F  D  ++ +L+ +Y K  
Sbjct: 41  HLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCG 100

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
           S+ +A  +FDKM  KD V W  +I+ Y Q+  P E++ LL  M++  F+ + FT  + + 
Sbjct: 101 SVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           +     +   G Q+HA  ++      V V ++L+DMY  C  ++ A  +FD + +K  VS
Sbjct: 161 AAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462
           W+++I G+        AL +F+EM+  G E    T  +I      IGALE  K++H + +
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMV 280

Query: 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQC 522
           K      + V   +   YAK G +  A ++F  E++ +KD++TWNSM++A+A++G   + 
Sbjct: 281 KSRQKLTAFVGNTMLDMYAKSGSMIDARKVF--ERVLNKDLVTWNSMLTAFAQYGLGKEA 338

Query: 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582
              + +M++S +  + ITFL +LTAC + GLV+EG+  F  +KE Y  EP  EHY ++V+
Sbjct: 339 VSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVTVVD 397

Query: 583 LLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642
           LLGRAG ++ A   +  MP +P A VWG LL+AC+MH   ++ +  A+ +  ++P+++G 
Sbjct: 398 LLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGP 457

Query: 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAI 702
            VLL NIYA+ G W+  A++R  ++  G+KK P CSW+EIG  VH F A D +HP+A+ I
Sbjct: 458 PVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEI 517

Query: 703 YTILGILELEI 713
           Y +   + ++I
Sbjct: 518 YKMWDEISMKI 528



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 169/328 (51%), Gaps = 1/328 (0%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           P    Y   I +C+   +     KIH  +    F+    + ++L+  Y KC    E  K 
Sbjct: 49  PTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKV 108

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
             + + KD+ S W SLI+   QN    ++  L   M     + +  T  +LL++      
Sbjct: 109 FDKMRKKDMVS-WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYAD 167

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
             +G  +H +AV  D+ +D+ V +ALL MY++   ++ A  +FDK+  K+ V WN +IS 
Sbjct: 168 SGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISG 227

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           + + G  + +L +   M R+GF A  FT  +  S ++ +  +E GK +HA+++++     
Sbjct: 228 FARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLT 287

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
             V N+++DMY +   +  ARK+F+ V  K +V+W+SM+  +  +    EA+  F EM+ 
Sbjct: 288 AFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRK 347

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKY 456
            G+ ++ +T + IL AC + G ++  K+
Sbjct: 348 SGIYLNQITFLCILTACSHGGLVKEGKH 375



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 173/397 (43%), Gaps = 16/397 (4%)

Query: 28  PHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLS 84
           P     H+F  +  C   ++L   ++IH  ++       +  L ++LI  Y   G +  +
Sbjct: 49  PTPRVYHAF--ITACAQSKNLDDARKIHG-HLASSRFEGDAFLDNSLIHLYCKCGSVVEA 105

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144
            +VF+ +   + + + +++   ++     + + +   M      P   T+  ++++    
Sbjct: 106 HKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 145 LDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR---- 200
            D   G +IHA  VK  +     VG AL++ Y +C      +  M    F  L S+    
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARC-----GKMDMATAVFDKLDSKNGVS 220

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+LIS   + G  E +  +F  M+  G E    T  ++      + +LE G+ VH   V
Sbjct: 221 WNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMV 280

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            S       V   +L MY+K  S+ DA+ +F+++ +KD V WN M++A+ Q G  KE++ 
Sbjct: 281 KSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
               M +SG   +  T +  +++ S    ++ GK     +     + ++  + +++D+  
Sbjct: 341 HFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLG 400

Query: 381 ECEDLNCARK-IFDSVKTKTVVSWSSMIKGYVTHDQS 416
               LN A   IF      T   W +++     H  +
Sbjct: 401 RAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNA 437


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 319/591 (53%), Gaps = 18/591 (3%)

Query: 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDL 197
           ++SC+   +   G+++H  ++K  F        +L+  Y KC      +  +    F   
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCS---LIDHSLRVFNFPTH 92

Query: 198 KSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253
            ++    +N+LI+  + N   +++  L+  MR  G   D  T   ++R+  +     +  
Sbjct: 93  HNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVT 152

Query: 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSG 313
            +H +        D+ V +AL++ Y K   + +A  +F+++  +D V+WN M++ + Q G
Sbjct: 153 KIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIG 212

Query: 314 FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHN 373
             +E+L +   M  +G     +T    +S  S M + + G+ +H  V + G +  V V N
Sbjct: 213 RFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSN 272

Query: 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VE 432
           +LIDMY +C+ +  A  +F+ +    + SW+S++  +         LRLF  M     V+
Sbjct: 273 ALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQ 332

Query: 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS--------VNTAIFISYAKCG 484
            D VT+  +LPAC ++ AL H + +HGY +  GL    S        +N A+   YAKCG
Sbjct: 333 PDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCG 392

Query: 485 CIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL 544
            +  A  +F   +   KD+ +WN MI+ Y  HG   +   ++++M Q+ + P+ I+F+GL
Sbjct: 393 NMRDARMVFVNMR--EKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGL 450

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           L+AC +AG+V+EG     EM+  YG  PS EHY  ++++L RAG + EA +LV  MPFK 
Sbjct: 451 LSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKA 510

Query: 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664
           D   W  LL+AC++H++T+LAE+ A K+I +EP++ GNYVL+SN+Y   G++  V + R 
Sbjct: 511 DPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRY 570

Query: 665 FLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
            ++ + +KK PGCSWIE+   VH F   D++HPQ + IY  L  L   + E
Sbjct: 571 TMKQQNVKKRPGCSWIELVNGVHVFITGDRTHPQTEYIYAGLNSLTAVLQE 621



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 218/466 (46%), Gaps = 22/466 (4%)

Query: 69  SNLIDSYANLGLLSLSQQVFNSIT--SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS 126
           ++LI+ Y+   L+  S +VFN  T  + N   Y  ++         ++ L +Y QM    
Sbjct: 68  TSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLG 127

Query: 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186
           + P + T+P VIR+C    D     KIH  + K+G +    VG ALV  Y+K        
Sbjct: 128 IAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKF-----RF 182

Query: 187 KGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRS 242
            G   R F++L  R    WN++++   Q G+ E++  +F+ M   G      T+  +L  
Sbjct: 183 VGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSI 242

Query: 243 TVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW 302
              +   + GR VH       +   + V+ AL+ MY K   + DA  +F+ M + D   W
Sbjct: 243 FSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSW 302

Query: 303 NIMISAYYQSGFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           N ++S + + G    +L L   M+ S   + DL T    + + + +  +  G+++H  ++
Sbjct: 303 NSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMV 362

Query: 362 RNGSDYQ--------VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
            NG   +        V ++N+L+DMY +C ++  AR +F +++ K V SW+ MI GY  H
Sbjct: 363 VNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMH 422

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSV 472
               EAL +FS M    +  + ++ + +L AC + G + E + +L     K G++     
Sbjct: 423 GYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEH 482

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGD 518
            T +     + G +  A +L       + D + W S+++A   H D
Sbjct: 483 YTCVIDMLCRAGQLMEAYDLVLTMPFKA-DPVGWRSLLAACRLHND 527



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 178/379 (46%), Gaps = 34/379 (8%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           GL  ++ + S L+++Y     +  + +VF  +   + +L+  ++   ++ G +E+ L V+
Sbjct: 162 GLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVF 221

Query: 120 KQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC 179
           ++M    + P   T   V+   S + DF +G  +H  V K+G++S   V +AL++ Y KC
Sbjct: 222 RRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKC 281

Query: 180 DGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF-KLMRMEGAEFDSGTLIN 238
               +           D+ S WNS++S+  + G    +  LF ++M     + D  T+  
Sbjct: 282 KCVGDALSVFEMMDEIDIFS-WNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTT 340

Query: 239 LLRSTVELKSLELGRIVHCVAVVSDFCK--------DLSVNTALLSMYSKLASLEDAKML 290
           +L +   L +L  GR +H   VV+   K        D+ +N AL+ MY+K  ++ DA+M+
Sbjct: 341 VLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMV 400

Query: 291 FDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350
           F  M +KD   WNIMI+ Y   G+  E+L++   M ++    +  + +  +S+ S     
Sbjct: 401 FVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACS----- 455

Query: 351 EWGKQMHANVLRNG--------SDYQVSV----HNSLIDMYCECEDLNCARKIFDSVKTK 398
                 HA +++ G        S Y VS     +  +IDM C    L  A  +  ++  K
Sbjct: 456 ------HAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFK 509

Query: 399 T-VVSWSSMIKGYVTHDQS 416
              V W S++     H+ +
Sbjct: 510 ADPVGWRSLLAACRLHNDT 528



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 148/287 (51%), Gaps = 12/287 (4%)

Query: 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRN---GSDYQVSVHNSLIDMYCECEDLNCAR 389
           DL T IA + S +   N+  GK++H ++L+N   GS   ++   SLI+MY +C  ++ + 
Sbjct: 28  DLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAIT---SLINMYSKCSLIDHSL 84

Query: 390 KIFD--SVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN 447
           ++F+  +   K V +++++I G++ +     AL L+++M+  G+  D  T   ++ AC +
Sbjct: 85  RVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGD 144

Query: 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507
                 V  +HG   K+GL     V +A+  +Y K   +  A  +F+E  +  +D++ WN
Sbjct: 145 DDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPV--RDVVLWN 202

Query: 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567
           +M++ +A+ G + +   ++ +M  + V P   T  G+L+     G  + GR +   + + 
Sbjct: 203 AMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTK- 261

Query: 568 YGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
            GYE       +++++ G+   + +A  + + M  + D   W  ++S
Sbjct: 262 MGYESGVVVSNALIDMYGKCKCVGDALSVFEMMD-EIDIFSWNSIMS 307


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/563 (33%), Positives = 295/563 (52%), Gaps = 70/563 (12%)

Query: 219 ELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278
            +F  M  +G   DS  L  ++++   L +L+ G+ +HC A+VS    D  V ++LL MY
Sbjct: 60  RVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMY 119

Query: 279 SKLASLEDAKMLFDKM---------------SDKDRV--------------------VWN 303
            +   L+DA+ +FDK+               + K RV                     WN
Sbjct: 120 VQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWN 179

Query: 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363
            MIS + +SG   +++ +   M   G + D  +  + + ++  +     G Q+H  V++ 
Sbjct: 180 GMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQ 239

Query: 364 GSDYQVSVHNSLIDMY--CECED-----------------------------LNCARKIF 392
           G      V ++LIDMY  C C                               ++ A ++F
Sbjct: 240 GLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVF 299

Query: 393 DSVKTK--TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450
              K     VVSW+SMI     + + +EAL LF EM++EGV+ + VTI  +LPAC NI A
Sbjct: 300 KQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAA 359

Query: 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           L H K  H +S++ G+ +   V +A+   YAKCG +  +   FD   + ++++++WNS++
Sbjct: 360 LLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFD--MMPNRNLVSWNSLM 417

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           + YA HG   +   ++  M++   +PD ++F  +L+AC   GL EEG   F  M  ++G 
Sbjct: 418 AGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGV 477

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           E   EHY+ MV LLGR+G ++EA  ++K MPF+PD+ VWG LLS+C++H+  +L E+ A+
Sbjct: 478 EARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAK 537

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           ++  +EP N GNY+LLSNIYA+   W  V  +R  +R RGLKK PG SWIEI   VH   
Sbjct: 538 RVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLL 597

Query: 691 AADQSHPQADAIYTILGILELEI 713
           A D SHPQ   I   L  L +E+
Sbjct: 598 AGDSSHPQMPQIIEKLAKLTVEM 620



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 196/479 (40%), Gaps = 69/479 (14%)

Query: 106 LSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIH--AQVVKLGFD 163
            SK   +   + V+  M  Q + P     P VI++C+ L    +G+++H  A V  LG D
Sbjct: 49  FSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLD 108

Query: 164 S------------FDDVGDALVEFYIKCDGGFENEKGMIQR-----KFKDLKS------- 199
           S            FD + DA   F      G      +I R     + K+ K        
Sbjct: 109 SVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRD 168

Query: 200 --------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL 251
                    WN +IS   ++G    +  +F+ M +EG + D  ++ ++L +  +L    +
Sbjct: 169 LGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLM 228

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD------------- 298
           G  +HC  +      D  V +AL+ MY K A   +   +F++M + D             
Sbjct: 229 GIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSR 288

Query: 299 --------------------RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAI 338
                                V W  MI++  Q+G   E+LEL   M   G + +  T  
Sbjct: 289 NGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIP 348

Query: 339 AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK 398
             + +   +  +  GK  H   LRNG    V V ++LIDMY +C  +  +R  FD +  +
Sbjct: 349 CLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNR 408

Query: 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV-KYL 457
            +VSW+S++ GY  H ++ EA+ +F  M+  G + D V+   +L AC   G  E    Y 
Sbjct: 409 NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYF 468

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
              S   G+ +     + +     + G +E A  +  +   +  D   W +++S+   H
Sbjct: 469 DSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFE-PDSCVWGALLSSCRVH 526



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 40/354 (11%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSI----T 92
           SLL++     HL+   AR +        ++ SS LI  +A  G +  ++++F        
Sbjct: 114 SLLHMYVQFDHLKD--ARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGV 171

Query: 93  SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152
             N + +  ++   ++ G Y   +L+++ M L+ + P   +   V+ +   L   + G +
Sbjct: 172 ELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQ 231

Query: 153 IHAQVVKLGFDSFDDVGDALVEFYIKCD-----GGFENE------------------KGM 189
           IH  V+K G      V  AL++ Y KC       G  NE                   G+
Sbjct: 232 IHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGL 291

Query: 190 IQRK---FKDLKS------RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL 240
           +      FK  K        W S+I+   QNGK  ++ ELF+ M++EG + +S T+  LL
Sbjct: 292 VDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLL 351

Query: 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV 300
            +   + +L  G+  HC ++ +    D+ V +AL+ MY+K   +  +++ FD M +++ V
Sbjct: 352 PACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLV 411

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSISTMKNIEW 352
            WN +++ Y   G   E++ +   M R G + D   FT + +  +   +    W
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGW 465



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 129/305 (42%), Gaps = 59/305 (19%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFN-----SITSPNSLLYG---- 100
           QIH  Y+I  GL  +  + S LID Y      S    VFN      + + N+L+ G    
Sbjct: 231 QIHC-YVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRN 289

Query: 101 ------------------------TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136
                                   +++ + S+ G+  + L ++++M ++ + P   T P 
Sbjct: 290 GLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPC 349

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV--GDALVEFYIKCDGGFENEKGMIQRKF 194
           ++ +C  +   + G+  H   ++ G   F+DV  G AL++ Y KC     +         
Sbjct: 350 LLPACGNIAALLHGKAAHCFSLRNGI--FNDVYVGSALIDMYAKCGRMLASRLCFDMMPN 407

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254
           ++L S WNSL++    +GK+ ++  +F+LM+  G + D  +   +L +  +    E G  
Sbjct: 408 RNLVS-WNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWF 466

Query: 255 VHCVAVVSDFCKDLSVN----------TALLSMYSKLASLEDAKMLFDKMS-DKDRVVWN 303
                    +   +S N          + ++++  +   LE+A  +  +M  + D  VW 
Sbjct: 467 ---------YFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWG 517

Query: 304 IMISA 308
            ++S+
Sbjct: 518 ALLSS 522


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/675 (28%), Positives = 353/675 (52%), Gaps = 13/675 (1%)

Query: 16  VKFLRFPANQT-RPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID- 73
           +++L F  N T R         + L+ C +  +L ++H R +  H L  +  ++  L+  
Sbjct: 1   MRYLYFRPNTTSRARACRDSLLAHLDACASRANLAELHGRLVRAH-LGSDPCVAGRLVTL 59

Query: 74  --SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131
             S  +   +  +++VF+ +  P ++++  +++  +        L +++ M    + P  
Sbjct: 60  LASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDN 119

Query: 132 DTYPFVIRSCSCLLDF---ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
            T   V +S +    +    +G+ +HA V ++GF S   V   L+ FY       +  K 
Sbjct: 120 YTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKV 179

Query: 189 MIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
             +   +D+ S W  +IS   Q G+ +        M+ EG + +  T+I+LL +  ++++
Sbjct: 180 FEEMHERDVVS-WTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRA 238

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           ++ G  V+          D+ +  AL+ MY K   + DA   F  M  ++   WN +I  
Sbjct: 239 VDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDG 298

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368
           + Q+G  KE+L +   M+  G   D+ T ++ +S+ + + +++ G+ +H  +  +     
Sbjct: 299 FVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCD 358

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428
           + + NSLI+MY +C D+  A  IF+++  + +VSW++M+ GYV   Q   A  LF +MK+
Sbjct: 359 IILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKV 418

Query: 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488
             V    + ++++L AC  +GAL+  + +H Y  +  + +   + +A+   YAKCGCI+ 
Sbjct: 419 RDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDA 478

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQ-MKQSDVRPDLITFLGLLTA 547
           A E+F   ++  K  + WN+MI   A  G   +   L+ Q +K  D +PD IT   +L A
Sbjct: 479 AAEIF--SRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCA 536

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C + G+V+EG   F  M  + G  P  EHY  +V+LLGRAG +DEA   ++ MP +P+  
Sbjct: 537 CTHVGMVDEGLHYFNLML-TLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPV 595

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           +WG LL+AC++H   EL ++  + +I + P + G +VL+SN++A  G+W+ V ++R  + 
Sbjct: 596 IWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMG 655

Query: 668 DRGLKKTPGCSWIEI 682
            R ++K+PG S I++
Sbjct: 656 SRRVEKSPGHSSIQV 670


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 269/459 (58%), Gaps = 4/459 (0%)

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVV-WNIMISAYYQSGFPKESLELLMCMVRS 328
           V T+LL++Y++   L DA+  FD+M      V W  +I+AY  +G   E++ +      S
Sbjct: 112 VLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFAS 171

Query: 329 GFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388
           G R D FTA+  +++ + + ++  G+++     + G    V V  + +D+Y +C +++ A
Sbjct: 172 GVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKA 231

Query: 389 RKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448
           R +FD +K K VV+W +M+ GY ++    EAL LF  M++EG+  D  T+   L AC  +
Sbjct: 232 RGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRL 291

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           GAL+  + + G      +     + TA+   YAKCG    A  +F  +K+ ++DII WN+
Sbjct: 292 GALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVF--QKMRNRDIIVWNA 349

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568
           MI      G     F L  QMK+S +  +  TF+GLL +C + GLV++GR  F+ M + Y
Sbjct: 350 MILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLY 409

Query: 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELT 628
              P  EHY  MV+LL RAG + EA +L++DMP + +A VWG LL  CK+H   +LAE  
Sbjct: 410 HIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHV 469

Query: 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHE 688
            ++LI +EP N+GNYV+LSNIY+ +G+W   AK+R  ++ +G++K P  SW+E+   VHE
Sbjct: 470 LKQLIQLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVELDGKVHE 529

Query: 689 FWAADQSHPQADAIYTILGILELEIME-GRRESSEELKF 726
           F   D+SHP +D IY  L  L +E+   G + S+E + F
Sbjct: 530 FHVGDKSHPLSDQIYAKLDELGMEMKAMGYKPSTEVVMF 568



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 155/322 (48%), Gaps = 1/322 (0%)

Query: 129 PAEDTYPFVIRSCSCLLD-FISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEK 187
           P+  T+PF I+S S L D   +G ++HA+ +KL   S   V  +L+  Y +C    + +K
Sbjct: 72  PSHLTFPFAIKSASRLPDPLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQK 131

Query: 188 GMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247
              + +       W +LI+  +  G+  ++  + +     G   DS T + +L +   + 
Sbjct: 132 AFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVA 191

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
            L  G  V   A       ++ V TA + +Y K   ++ A+ +FDKM +KD V W  M+ 
Sbjct: 192 DLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVG 251

Query: 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
            Y  +G P+E+LEL   M   G R D +T   A+S+ + +  ++ G+++   +  +    
Sbjct: 252 GYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLG 311

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
              +  +LIDMY +C     A  +F  ++ + ++ W++MI G         A  L  +MK
Sbjct: 312 NPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGLGMTGHEKIAFALVGQMK 371

Query: 428 LEGVEVDFVTIINILPACVNIG 449
             G+ ++  T I +L +C + G
Sbjct: 372 KSGMTLNDNTFIGLLCSCTHTG 393



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 193/410 (47%), Gaps = 13/410 (3%)

Query: 15  HVKFLRFPANQTRP-HMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSN 70
           H+  LRF ++   P H+T    F++ +    P  L    Q+HAR + L   H N  + ++
Sbjct: 59  HLHVLRFHSHLPNPSHLT--FPFAIKSASRLPDPLTAGAQLHARSLKLPS-HSNPHVLTS 115

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLL-YGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129
           L++ YA  G L  +Q+ F+ +  P S + +  ++      G   + + V +      + P
Sbjct: 116 LLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYMDAGRGLEAIGVARSAFASGVRP 175

Query: 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189
              T   V+ +C+ + D ++GE++     K G      V  A V+ Y+KC G  +  +G+
Sbjct: 176 DSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVFVATAAVDLYVKC-GEMDKARGV 234

Query: 190 IQR-KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKS 248
             + K KD+ + W +++     NG   ++ ELF  M++EG   D  T+   L +   L +
Sbjct: 235 FDKMKNKDVVA-WGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGA 293

Query: 249 LELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISA 308
           L+LGR V  +    +   +  + TAL+ MY+K  S  +A M+F KM ++D +VWN MI  
Sbjct: 294 LDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILG 353

Query: 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR-NGSDY 367
              +G  K +  L+  M +SG   +  T I  + S +    ++ G++   N+ +      
Sbjct: 354 LGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRP 413

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYVTHDQS 416
           ++  +  ++D+      L  A ++   +  +   V W +++ G   H  +
Sbjct: 414 RIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNA 463


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 315/563 (55%), Gaps = 6/563 (1%)

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           KIHA ++  G     +    L++ Y +  G  E+ + +  +  +     WN++I    + 
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARL-GHIESARQVFDKSPQCGVDAWNAMIIAYSRR 83

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G   ++  L+  M  EG   DS T   +L++      L  G      AV   +  D+ V 
Sbjct: 84  GAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVG 143

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR 331
            A+L++Y+K   +++A  +FDKM  +D V W  MI+   Q+G  +E++++   M +    
Sbjct: 144 AAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVE 203

Query: 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391
            D    +  + + +T+ + + G  +H  ++R      V V  SL+DMY +   L  A  +
Sbjct: 204 GDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCV 263

Query: 392 FDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451
           F  +  K V+SWS++I G+  +  +  AL+L  +M+  G + D V+++++L AC  +G L
Sbjct: 264 FRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFL 323

Query: 452 EHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI 510
           +  K +HGY ++ L  + +SS  TA+   Y+KCG +  A  +FD+  I  +D I+WN++I
Sbjct: 324 KLGKSVHGYIVRRLHFDCVSS--TAVIDMYSKCGSLSFARTVFDQ--ISFRDSISWNAII 379

Query: 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570
           ++Y  HG   +   L+ QM++++V+PD  TF  LL+A  ++GLVE+GR  F  M   Y  
Sbjct: 380 ASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKI 439

Query: 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630
           +PS++HYA MV+LL RAG ++EA+EL++ M  +P   +W  LLS C  H +  + E+ A+
Sbjct: 440 QPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAK 499

Query: 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
           K++ + P++ G Y L+SN +A A +W+ VA++R  ++  G+KK PG S +E+   +H F 
Sbjct: 500 KVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFL 559

Query: 691 AADQSHPQADAIYTILGILELEI 713
             D+SH Q + I  +LG L+ E+
Sbjct: 560 MEDKSHHQYEEIMQVLGKLDYEM 582



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 245/484 (50%), Gaps = 5/484 (1%)

Query: 37  SLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNS 96
           +LL   ++   + +IHA  +IL G+  +   ++ LI SYA LG +  ++QVF+       
Sbjct: 12  TLLITSKDEPTIAKIHA-LMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGV 70

Query: 97  LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156
             +  ++   S+ G   + L +Y +MA + + P   TY  V+++C+  LD  SGE+   Q
Sbjct: 71  DAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQ 130

Query: 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEK 216
            V  G+     VG A++  Y KC    E  +   +   +DL   W ++I+   QNG++ +
Sbjct: 131 AVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVC-WTTMITGLAQNGQARE 189

Query: 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276
           + ++++ M  +  E D   ++ L+++   L   ++G  +H   +  D   D+ V T+L+ 
Sbjct: 190 AVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVD 249

Query: 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT 336
           MY+K   LE A  +F +M  K+ + W+ +IS + Q+GF   +L+L++ M   G++ D  +
Sbjct: 250 MYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVS 309

Query: 337 AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396
            ++ + + S +  ++ GK +H  ++R    +      ++IDMY +C  L+ AR +FD + 
Sbjct: 310 LVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQIS 368

Query: 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456
            +  +SW+++I  Y  H    EAL LF +M+   V+ D  T  ++L A  + G +E  +Y
Sbjct: 369 FRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRY 428

Query: 457 LHGYSMKLGLNSLSSVNTAIFIS-YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515
                +       S  + A  +   ++ G +E A EL  E  I    I  W +++S    
Sbjct: 429 WFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELI-ESMITEPGIAIWVALLSGCLN 487

Query: 516 HGDW 519
           HG +
Sbjct: 488 HGKF 491


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/609 (31%), Positives = 326/609 (53%), Gaps = 47/609 (7%)

Query: 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196
           ++ +C+ + +     +IH+Q +K G  S       L +  I C      +    ++ F +
Sbjct: 41  LLETCNTMYEI---NQIHSQTIKTGLSSNHLF---LTKVIIFCCTKESGDVYYARKVFDE 94

Query: 197 LKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252
           +       WN++I    +   SE    L+KLM +   + D  T   LL+   +  +L+ G
Sbjct: 95  IPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYG 154

Query: 253 RIVHCVAVVSDFC-KDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           +++   AV+  F   +L V    + ++S    +  A+ +FD     + V WN+++S Y +
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR 214

Query: 312 SGFPKESLELLMCMVRSG--FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQ 368
               +ES  L + M +       +  T +  +S+ S +K++  GK ++   ++ G  +  
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274

Query: 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS----------------------- 405
           + + N+LIDM+  C +++ AR +FD +KT+ V+SW+S                       
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPE 334

Query: 406 --------MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457
                   MI GY+  ++  E L LF +M++  V+ D  T+++IL AC ++GALE  ++ 
Sbjct: 335 RDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWA 394

Query: 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
             Y  K  + + + +  A+   Y KCG +E A ++F+E  +  KD  TW +MI   A +G
Sbjct: 395 KTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE--MQKKDKFTWTAMIVGLANNG 452

Query: 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577
              +   +++ M ++ V PD IT++G++ AC + GLV +G+  F  M   +G +P+  HY
Sbjct: 453 HGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHY 512

Query: 578 ASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637
             MV+LLGRAGH+ EA E++ +MP KP++ VWG LL AC++H   +LAE+ A +++ +EP
Sbjct: 513 GCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEP 572

Query: 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHP 697
           EN   YVLL NIYAA  KW  +  +R  + +RG+KK PGCS +E+  +V+EF A D+SHP
Sbjct: 573 ENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHP 632

Query: 698 QADAIYTIL 706
           Q+  IY  L
Sbjct: 633 QSKEIYAKL 641



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 216/482 (44%), Gaps = 49/482 (10%)

Query: 18  FLRFPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLID--SY 75
           FL+   + T  H       SLL  C     + QIH++  I  GL  N +  + +I     
Sbjct: 21  FLKRMISNTPLHSFVKSPISLLETCNTMYEINQIHSQ-TIKTGLSSNHLFLTKVIIFCCT 79

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYP 135
              G +  +++VF+ I  P+  ++ T++K  S+    E  + +YK M + ++ P   T+P
Sbjct: 80  KESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFP 139

Query: 136 FVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
           F+++  +  +    G+ +    V  GF DS   V    +  +  C  G  N      RK 
Sbjct: 140 FLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLC--GLVN----YARKI 193

Query: 195 KDLKSRWNSLISLAVQNG-----KSEKSFELFKLM--RMEGAEFDSGTLINLLRSTVELK 247
            D+   W  +    V +G     + E+S  LF  M  + E    +S TL+ +L +  +LK
Sbjct: 194 FDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLK 253

Query: 248 SLELGRIVHCV---------------AVVSDFC-----------------KDLSVNTALL 275
            L  G+ ++                 A++  F                  +D+   T+++
Sbjct: 254 DLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIV 313

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
           + ++    ++ A+  FD+M ++D V W  MI  Y +    KE L L   M  S  + D F
Sbjct: 314 TGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEF 373

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
           T ++ +++ + +  +E G+     + +N       + N+LIDMY +C ++  A+KIF+ +
Sbjct: 374 TMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM 433

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
           + K   +W++MI G   +    EAL +FS M    V  D +T I ++ AC ++G +   K
Sbjct: 434 QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGK 493

Query: 456 YL 457
           + 
Sbjct: 494 HF 495



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 193/440 (43%), Gaps = 40/440 (9%)

Query: 55  YIILHG-LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYE 113
           + ++HG L  NL +    I  ++  GL++ ++++F+       + +  +L   ++F  YE
Sbjct: 160 HAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYE 219

Query: 114 --KTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV-GD 170
             K L +  +   + + P   T   ++ +CS L D + G+ I+ + +K G    + +  +
Sbjct: 220 ESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILEN 279

Query: 171 ALVEFYIKCD------------------------GGFEN--EKGMIQRKFKDLKSR---- 200
           AL++ +  C                          GF N     + ++ F  +  R    
Sbjct: 280 ALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVS 339

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           W ++I   ++  + ++   LF+ M+M   + D  T++++L +   L +LELG        
Sbjct: 340 WTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYID 399

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            +    D  +  AL+ MY K  ++E AK +F++M  KD+  W  MI     +G  +E+L 
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV-LRNGSDYQVSVHNSLIDMY 379
           +   M+ +    D  T I  + + + +  +  GK   +N+ +++G    ++ +  ++D+ 
Sbjct: 460 MFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLL 519

Query: 380 CECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVTHDQ---SLEALRLFSEMKLEGVEVDF 435
                L  A ++  ++  K   + W S++     H     +  A     E++ E   V +
Sbjct: 520 GRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAV-Y 578

Query: 436 VTIINILPACVNIGALEHVK 455
           V + NI  AC     L +V+
Sbjct: 579 VLLCNIYAACKKWKNLHNVR 598



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 164/362 (45%), Gaps = 19/362 (5%)

Query: 314 FPKESLELLMCMVRSGFRADLF--TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
           FP  SL L +  + S      F  + I+ + + +TM  I    Q+H+  ++ G       
Sbjct: 13  FPNLSLSLFLKRMISNTPLHSFVKSPISLLETCNTMYEIN---QIHSQTIKTGLSSNHLF 69

Query: 372 HNSLIDMYC--ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE 429
              +I   C  E  D+  ARK+FD +   +V  W++MIKGY   + S   + L+  M + 
Sbjct: 70  LTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVH 129

Query: 430 GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGCIEM 488
            ++ D  T   +L       AL++ K L  +++  G L+S   V       ++ CG +  
Sbjct: 130 NIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNY 189

Query: 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS--DVRPDLITFLGLLT 546
           A ++FD    D  +++TWN ++S Y +   + +  +L+ +M++    V P+ +T + +L+
Sbjct: 190 ARKIFDMG--DGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLS 247

Query: 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA 606
           AC     +  G+ I+ +  +    EP+     +++++    G MD AR +  +M  + D 
Sbjct: 248 ACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR-DV 306

Query: 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666
             W  +++        +L    A K     PE   +YV  + +     + N   ++ T  
Sbjct: 307 ISWTSIVTGFANTCRIDL----ARKYFDQMPER--DYVSWTAMIDGYLRMNRFKEVLTLF 360

Query: 667 RD 668
           RD
Sbjct: 361 RD 362


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 291/514 (56%), Gaps = 6/514 (1%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN+L++   +     ++  +F+ +    A  DS T    L +   L  L  G +V   A 
Sbjct: 72  WNALLAAHSRGASPHEALRVFRALP-PAARPDSTTFTLALSACARLGDLATGEVVTDRAS 130

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
            + +  D+ V +++L++Y+K  +++DA  +FD+M  +DRV W+ M++ +  +G P +++E
Sbjct: 131 GAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIE 190

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYC 380
           + M M R G  AD    +  + + +   +   G  +H  +LR+     V +  SL+DMY 
Sbjct: 191 MYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYA 250

Query: 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN 440
           +    + AR++F+ +  +  VSWS++I     +  + EAL LF  M++ G+  +   ++ 
Sbjct: 251 KNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVG 310

Query: 441 ILPACVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
            L AC ++G L+  K +HG+ ++ L L+ +  V TA+   Y+KCG +  A  LFD  K+ 
Sbjct: 311 ALLACSDLGLLKLGKSIHGFILRTLELDRM--VGTAVIDMYSKCGSLSSAQMLFD--KVV 366

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
           S+D+I+WN MI+    HG       L+ +MK+++VRPD  TF  LL+A  ++GLVEEG+ 
Sbjct: 367 SRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKF 426

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
            F  M   YG EP ++H   +V+LL R+G ++EA  LV  +  KP   +   LLS C  +
Sbjct: 427 WFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNN 486

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
           ++ EL E TAEK++ ++P + G   L+SN+YAAA  W  V ++R  ++D G KK PGCS 
Sbjct: 487 NKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSS 546

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
           IEI   +H F   DQSHPQ   I  ++  L+ E+
Sbjct: 547 IEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEM 580



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 209/421 (49%), Gaps = 5/421 (1%)

Query: 38  LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVF-NSITSPNS 96
           LL+ C   + L ++HA  I+      + ILSS L  +YA  G L+ ++     + TSP+S
Sbjct: 9   LLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLATAPTSPSS 68

Query: 97  L-LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHA 155
           +  +  +L   S+     + L V++ +   +  P   T+   + +C+ L D  +GE +  
Sbjct: 69  IPAWNALLAAHSRGASPHEALRVFRALP-PAARPDSTTFTLALSACARLGDLATGEVVTD 127

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
           +    G+ +   V  +++  Y KC G  ++   +  R  K  +  W+++++  V  G+  
Sbjct: 128 RASGAGYGNDIFVCSSVLNLYAKC-GAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPV 186

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
           ++ E++  MR +G E D   ++ ++++        +G  VH   +      D+ ++T+L+
Sbjct: 187 QAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLV 246

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335
            MY+K    + A+ +F+ M  ++ V W+ +IS   Q G   E+L L   M  SG   +  
Sbjct: 247 DMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSG 306

Query: 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395
             + A+ + S +  ++ GK +H  +LR   +    V  ++IDMY +C  L+ A+ +FD V
Sbjct: 307 PVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKV 365

Query: 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455
            ++ ++SW+ MI     H +  +AL LF EMK   V  D  T  ++L A  + G +E  K
Sbjct: 366 VSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGK 425

Query: 456 Y 456
           +
Sbjct: 426 F 426



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531
           +++ +  +YA+ G +  A             I  WN++++A+++     +  +++  +  
Sbjct: 38  LSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALPP 97

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           +  RPD  TF   L+AC   G +  G ++  +     GY       +S++NL  + G MD
Sbjct: 98  A-ARPDSTTFTLALSACARLGDLATGEVV-TDRASGAGYGNDIFVCSSVLNLYAKCGAMD 155

Query: 592 EARELVKDMPFKPDARVWGPLLSA 615
           +A ++   M  K D   W  +++ 
Sbjct: 156 DAVKVFDRMR-KRDRVTWSTMVTG 178


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/535 (34%), Positives = 283/535 (52%), Gaps = 42/535 (7%)

Query: 215 EKSFELFKLMRMEGAEFDSGTLINLL---RSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
            +SF        E     S T  N L   R     K L     +H   +VS F    S+ 
Sbjct: 28  RRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI- 86

Query: 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV-RSGF 330
           T L+++YS     + A+ +FD   +  R++WN MI AY +S    E+LE+  CMV + G 
Sbjct: 87  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGL 146

Query: 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARK 390
             D+F     V   S M +++  ++    V        V   N++I    + ED   AR+
Sbjct: 147 ERDVFIGAGLVDMYSKMGDLKRARE----VFDKMPKRDVVAWNAMIAGLSQSEDPYVARR 202

Query: 391 IFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL---------------------- 428
           +FD +  +  VSW +M+ GY  +   +E L LF +MKL                      
Sbjct: 203 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAI 262

Query: 429 --------EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480
                   E    + VT +++LPA   + A       H   +++G  S + V  ++   Y
Sbjct: 263 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMY 322

Query: 481 AKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540
           AKCG ++ + +LF+E  +D KD ++WN+M+S YA HG   +   L++ M++S V+ D ++
Sbjct: 323 AKCGQLDYSEKLFNE--MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS 380

Query: 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600
           F+ +L+AC +AGLVEEGR IF  M + Y  +P  EHYA MV+LLGRAG  DE    +K M
Sbjct: 381 FVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVM 440

Query: 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660
           P +PDA VWG LL +C+MHS  +L E+  + L+ +EP N  ++V+LS+IYA +G+W    
Sbjct: 441 PVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAG 500

Query: 661 KMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEIME 715
           K R+ + D GLKKTPGCSW+E+   VH F   D+SHPQ ++++ +   L LE ME
Sbjct: 501 KARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTL-LEKME 554



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 160/368 (43%), Gaps = 40/368 (10%)

Query: 21  FPANQTRPHMTATHSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGL 80
           FP+  +  +    H   LL+ C++   L QIHA+ I+    H + I  ++LI+ Y+    
Sbjct: 41  FPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI--THLINLYSLFHK 98

Query: 81  LSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQM--------------ALQS 126
             L++ VF+S  +P+ +L+ ++++  ++  +Y + L +Y  M               L  
Sbjct: 99  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVD 158

Query: 127 MY----------------PAEDTYPF--VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
           MY                P  D   +  +I   S   D     ++  Q+V       DDV
Sbjct: 159 MYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQ-----DDV 213

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
               +      +G F     +   K K     WN +I+  +QNG ++++   F  MR+E 
Sbjct: 214 SWGTMMAGYAHNGCFVEVLELFD-KMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLEN 272

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288
              +S T +++L +   L +   G   H   +   F  +  V  +L+ MY+K   L+ ++
Sbjct: 273 FHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSE 332

Query: 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348
            LF++M  KD V WN M+S Y   G    ++ L   M  S  + D  + ++ +S+     
Sbjct: 333 KLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAG 392

Query: 349 NIEWGKQM 356
            +E G+++
Sbjct: 393 LVEEGRKI 400



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 124/259 (47%), Gaps = 6/259 (2%)

Query: 53  ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEY 112
           AR +    + Q+ +    ++  YA+ G      ++F+ +   N + +  I+    + G  
Sbjct: 200 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVIIAAYMQNGHA 258

Query: 113 EKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDAL 172
           ++ +  + QM L++ +P   T+  V+ + + L  F  G   HA ++++GF S   VG++L
Sbjct: 259 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 318

Query: 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
           ++ Y KC     +EK   +   KD  S WN+++S    +G  +++  LF LM+    + D
Sbjct: 319 IDMYAKCGQLDYSEKLFNEMDHKDTVS-WNAMLSGYAVHGHGDRAIALFSLMQESQVQID 377

Query: 233 SGTLINLLRSTVELKSLELGR-IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLF 291
           S + +++L +      +E GR I H ++       DL     ++ +  + A L D  + F
Sbjct: 378 SVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGR-AGLFDETLGF 436

Query: 292 DKM--SDKDRVVWNIMISA 308
            K+   + D  VW  ++ +
Sbjct: 437 IKVMPVEPDAGVWGALLGS 455


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 213/679 (31%), Positives = 358/679 (52%), Gaps = 30/679 (4%)

Query: 48  LQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLS 107
           L Q+ AR ++  G   +L + S L+ ++A  G+L  ++ +F ++   N++    ++  L 
Sbjct: 289 LDQVFAR-VLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLV 347

Query: 108 KFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF-------ISGEKIHAQVVKL 160
           K    E+ + ++      S     DT+  ++   S + +F       + G ++H  +++ 
Sbjct: 348 KQHCSEEAVGIFMG-TRDSFVVNTDTFVVLL---SAVAEFSIPEDGLMRGREVHGHILRT 403

Query: 161 GF-DSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSE 215
           G  D    + + LV  Y KC G  +       R F+ L +R    WN++IS+  QNG  E
Sbjct: 404 GLIDLKIALSNGLVNMYAKC-GAIDKA----SRVFRLLCARDRVSWNTIISVLDQNGFCE 458

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALL 275
            +   + +MR       +   I+ L S   L+ L  G+ VHC AV      D SV+ AL+
Sbjct: 459 GAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALV 518

Query: 276 SMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPK-ESLELLMCMVRSGFRADL 334
            MY    +  ++  +F+ M++ D V WN ++     S  P  ES+E+   M+RSG   + 
Sbjct: 519 KMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNK 578

Query: 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394
            T +  +S++S +  +E GKQ+HA VL++G+    +V N+L+  Y +  D++   ++F S
Sbjct: 579 VTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSS 638

Query: 395 VK-TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453
           +   +  VSW+SMI GY+ +    E +     M      +D  T   +L AC ++ ALE 
Sbjct: 639 MSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALER 698

Query: 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAY 513
              +H + ++  L S   V +A+   Y+KCG I+ A ++F+   +  K+  +WNSMIS Y
Sbjct: 699 GMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFN--SMSQKNEFSWNSMISGY 756

Query: 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573
           A+HG   +  +++ +M+++   PD +TF+ +L+AC +AGLV+ G   F EM E +G  P 
Sbjct: 757 ARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYF-EMMEDHGILPH 815

Query: 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK-- 631
            EHY+ +++LLGRAG + + +E +  MP KP+  +W  +L AC+   + +  +L  E   
Sbjct: 816 IEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASR 875

Query: 632 -LISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFW 690
            L+ +EP+N  NYVL SN YAA G+W   AK R  +    +KK  G SW+ +G  VH F 
Sbjct: 876 MLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFI 935

Query: 691 AADQSHPQADAIYTILGIL 709
           A D+SHP    IY  L  L
Sbjct: 936 AGDRSHPNTKEIYEKLNFL 954



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 147/624 (23%), Positives = 293/624 (46%), Gaps = 40/624 (6%)

Query: 20  RFPANQTRPHMTAT----HSFSLLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSY 75
           R P  QT P  +      H+  LL         +++H   ++  GL  +L LS++L++ Y
Sbjct: 43  RLPPPQTPPSRSPPPVHPHAGLLLPRRGEEAAPERLHLE-LVKRGLTHDLFLSNHLVNLY 101

Query: 76  ANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS---MYPAED 132
           A    L+ ++QVF+ +   N++ +  ++      G  ++   V+K M  +      P   
Sbjct: 102 AKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPF 161

Query: 133 TYPFVIRSCS----CLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKG 188
           T+  V+R+C      LL F    ++H  V K  + S   V +AL+  Y  C  G   +  
Sbjct: 162 TFGSVLRACQDAGPDLLAF--AVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQ 219

Query: 189 MI--QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLM-------RMEGAEFDSGTLINL 239
            +      +DL + WN+L+S+  + G    +F LF  M        +   E   G+LI  
Sbjct: 220 QVFDTTPVRDLIT-WNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLI-- 276

Query: 240 LRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
             +   L S   G +    A V  S    DL V +AL+S +++   L++AK +F  + ++
Sbjct: 277 --TATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKER 334

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE----WG 353
           + V  N +I    +    +E++ + M   R  F  +  T +  +S+++     E     G
Sbjct: 335 NAVTLNGLIVGLVKQHCSEEAVGIFM-GTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRG 393

Query: 354 KQMHANVLRNG-SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVT 412
           +++H ++LR G  D ++++ N L++MY +C  ++ A ++F  +  +  VSW+++I     
Sbjct: 394 REVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQ 453

Query: 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472
           +     A+  +  M+   +       I+ L +C ++  L   + +H  ++K GL+  +SV
Sbjct: 454 NGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSV 513

Query: 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA-YAKHGDWSQCFKLYTQMKQ 531
           + A+   Y  CG    + E+F+   +   DI++WNS++    + H   ++  ++++ M +
Sbjct: 514 SNALVKMYGDCGARSESWEIFN--SMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMR 571

Query: 532 SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591
           S + P+ +TF+ LL+A     ++E G+ +   + +    E +    A +++   ++G MD
Sbjct: 572 SGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNA-LMSCYAKSGDMD 630

Query: 592 EARELVKDMPFKPDARVWGPLLSA 615
              +L   M  + DA  W  ++S 
Sbjct: 631 SCEQLFSSMSGRRDAVSWNSMISG 654



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 21/285 (7%)

Query: 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413
           +++H  +++ G  + + + N L+++Y +   L  AR++FD +  +  VSW+ ++ GYV  
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 414 DQSLEALRLFSEMKLEGVEVDFVTII---NILPACVNIGA--LEHVKYLHGYSMKLGLNS 468
             + EA R+F  M  EG E    T     ++L AC + G   L     +HG   K    S
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 469 LSSVNTAIFISYAKC--GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526
            ++V  A+   Y  C  G    A ++FD   +  +D+ITWN+++S YAK G     F L+
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPV--RDLITWNALMSVYAKKGYVVSTFTLF 253

Query: 527 TQMKQSD----VRPDLITFLGLLTAC----VNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578
             M   D    +RP+  TF  L+TA      ++G++++   +F  + +S G        +
Sbjct: 254 MAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQ---VFARVLKS-GSSSDLYVGS 309

Query: 579 SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623
           ++V+   R G +DEA+++  ++  +    + G ++   K H   E
Sbjct: 310 ALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEE 354


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 273/476 (57%), Gaps = 3/476 (0%)

Query: 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297
           +++ +  + K+L   R +H     S    D  +  +L+ MY K  ++ DA+ +FDKM  +
Sbjct: 65  SIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSR 124

Query: 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357
           D V W  +I+ Y Q+  P E++ LL  M+R+ FR + FT  + + +         G+QMH
Sbjct: 125 DVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMH 184

Query: 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSL 417
           A  ++   D  V V ++L+DMY  CE ++ A  +FD + +K  VSW+++I G+       
Sbjct: 185 ALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGE 244

Query: 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477
             L  F+EM+  G      T  ++  A   IGALE  +++H + +K G    + V   + 
Sbjct: 245 TTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTML 304

Query: 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537
             YAK G +  A ++FD  ++D +D++TWN+M++A A++G   +    + ++++  ++ +
Sbjct: 305 GMYAKSGSMVDARKVFD--RMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLN 362

Query: 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597
            ITFL +LTAC + GLV+EG+  F  MK+ Y  +P  +HY S V+LLGRAG + EA   V
Sbjct: 363 QITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFV 421

Query: 598 KDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657
             MP +P A VWG LL AC+MH   ++ +  A+ +  ++P++ G  VLL NIYA+ GKWN
Sbjct: 422 FKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWN 481

Query: 658 GVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGILELEI 713
             A++R  ++  G+KK P CSW++I   VH F A D +HP++  IY +   + + I
Sbjct: 482 DAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRI 537



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 170/330 (51%), Gaps = 5/330 (1%)

Query: 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVK--LGFDSFDDVGDALVEFYIKCDGGFENE 186
           P    Y  +I +C+   +      IHA + +  L  D+F  + ++L+  Y KC    +  
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAF--LLNSLIHMYCKCGAVSDAR 115

Query: 187 KGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVEL 246
               +   +D+ S W  LI+   QN    ++  L   M       +  T  +LL++T   
Sbjct: 116 HVFDKMPSRDVVS-WTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGAC 174

Query: 247 KSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMI 306
               +G  +H +AV  ++ +D+ V +ALL MY++   ++ A M+FD++  K+ V WN +I
Sbjct: 175 GGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALI 234

Query: 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366
           + + +    + +L     M R+GF A  FT  +  S+ + +  +E G+ +HA+++++G  
Sbjct: 235 AGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQK 294

Query: 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426
               V N+++ MY +   +  ARK+FD +  + +V+W++M+     +    EA+  F E+
Sbjct: 295 LTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 354

Query: 427 KLEGVEVDFVTIINILPACVNIGALEHVKY 456
           +  G++++ +T +++L AC + G ++  K+
Sbjct: 355 RKCGIQLNQITFLSVLTACSHGGLVKEGKH 384



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/263 (18%), Positives = 120/263 (45%), Gaps = 7/263 (2%)

Query: 49  QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSK 108
           +Q+HA   + +   +++ + S L+D YA    + ++  VF+ + S N + +  ++   ++
Sbjct: 181 EQMHA-LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 239

Query: 109 FGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDV 168
             + E TL+ + +M          TY  +  + + +     G  +HA ++K G      V
Sbjct: 240 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFV 299

Query: 169 GDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG 228
           G+ ++  Y K     +  K   +   +DL + WN++++   Q G  +++   F+ +R  G
Sbjct: 300 GNTMLGMYAKSGSMVDARKVFDRMDKRDLVT-WNTMLTALAQYGLGKEAVAHFEEIRKCG 358

Query: 229 AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLED 286
            + +  T +++L +      ++ G+  H   ++ D+     ++   + + +  +   L++
Sbjct: 359 IQLNQITFLSVLTACSHGGLVKEGK--HYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKE 416

Query: 287 AKMLFDKMS-DKDRVVWNIMISA 308
           A +   KM  +    VW  ++ A
Sbjct: 417 ALIFVFKMPMEPTAAVWGALLGA 439


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 178/494 (36%), Positives = 283/494 (57%), Gaps = 24/494 (4%)

Query: 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM 294
           T  ++L+   +LKS++ GR +H +   +D   D  + + L+ MY     L + + +FDK+
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 295 SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-----DLFTAIAAVSSISTMKN 349
           +++   +WN++++ Y + G  +ESL L   M   G R       LF  +     IS    
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 350 I---------EWGKQMHANVLRNGSD--------YQVSVHNSLIDMYCECEDLNCARKIF 392
           I         E G  +   +L  G +         +++++N L+DMY +  +LN A ++F
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVF 282

Query: 393 DSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452
           +++  ++VVSW+SMI GY     S  ++RLF EM+ E +  + +T+  ILPAC ++ ALE
Sbjct: 283 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALE 342

Query: 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512
             + +HG+ ++ G +    V  A+   Y KCG + +A  LFD   I  KD+++W  MI+ 
Sbjct: 343 RGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD--MIPEKDLVSWTVMIAG 400

Query: 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572
           Y  HG  S+    + +M+ S + PD ++F+ +L AC ++GL++EG   F  M+ +   EP
Sbjct: 401 YGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEP 460

Query: 573 SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632
             EHYA +V+LL RAG++ +A + +K MP +PDA +WG LL  C+++ + +LAE  AE +
Sbjct: 461 KSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHV 520

Query: 633 ISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAA 692
             +EPEN G YVLL+NIYA A KW  V K+R  +  RGL+K PGCSWIEI   VH F   
Sbjct: 521 FELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTG 580

Query: 693 DQSHPQADAIYTIL 706
           D SHP A+ I  +L
Sbjct: 581 DSSHPLANKIELLL 594



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 163/340 (47%), Gaps = 28/340 (8%)

Query: 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVL 361
           +NI I  + + G  + ++EL+    +     +L T  + +   + +K+I+ G+++H+ + 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDL--ELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 362 RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALR 421
            N  +    + + L+ MY  C DL   R+IFD V  + V  W+ ++ GY       E+L 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 422 LFSEMKLEGV--------------EVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467
           LF  M+  G+              + D ++  +++   V+ G  E    L    + LG+N
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 468 ----SLSSV----NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519
               ++ SV    N  +   Y+K G +  A ++F  E +  + +++W SMI+ YA+ G  
Sbjct: 249 TDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVF--ETMGERSVVSWTSMIAGYAREGLS 306

Query: 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579
               +L+ +M++ D+ P+ IT   +L AC +   +E G+ I   +  + G+   +    +
Sbjct: 307 DMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRN-GFSLDRHVANA 365

Query: 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           +V++  + G +  AR L+ DM  + D   W  +++   MH
Sbjct: 366 LVDMYLKCGALGLAR-LLFDMIPEKDLVSWTVMIAGYGMH 404



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 193/431 (44%), Gaps = 47/431 (10%)

Query: 24  NQT-RPHMTATHSFSLLNLCENPQHLQ---QIHARYIILHGLHQNLILSSNLIDSYANLG 79
           NQ+ +P +      S+L LC + + +Q   +IH+  I  + +  + +L S L+  Y   G
Sbjct: 92  NQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHS-IIQSNDVEVDGVLGSKLVFMYVTCG 150

Query: 80  LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF--- 136
            L   +++F+ + +    L+  ++   +K G + ++L ++K+M    +   E        
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE 210

Query: 137 -----VIRSCSCLLDFIS------GEKIHAQVVKLGFDSFD---------DVGDALVEFY 176
                VI   S +  ++S      G  +  Q++ LG ++ D          + + L++ Y
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINT-DLATMVSVELTLNNCLLDMY 269

Query: 177 IKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232
            K      N    IQ  F+ +  R    W S+I+   + G S+ S  LF  M  E    +
Sbjct: 270 SKSG----NLNSAIQ-VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPN 324

Query: 233 SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFD 292
           S T+  +L +   L +LE G+ +H   + + F  D  V  AL+ MY K  +L  A++LFD
Sbjct: 325 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 384

Query: 293 KMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD--LFTAIAAVSSISTMKNI 350
            + +KD V W +MI+ Y   G+  E++     M  SG   D   F +I    S S + + 
Sbjct: 385 MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDE 444

Query: 351 EWGKQMHANVLRNGS--DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS-WSSMI 407
            WG     N++RN    + +   +  ++D+     +L+ A K    +  +   + W +++
Sbjct: 445 GWG---FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 501

Query: 408 KG-YVTHDQSL 417
            G  + HD  L
Sbjct: 502 CGCRIYHDVKL 512


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/644 (30%), Positives = 340/644 (52%), Gaps = 11/644 (1%)

Query: 75  YANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY 134
           Y+  G +  +Q++F+ ++  + + Y  ++      G Y K + ++ +  +  +   + +Y
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 135 PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKF 194
             V+ +C  + DF  G+ IH   +  G      + + L++ Y KC+   ++ + + +   
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCER-IDHARLLFESSD 172

Query: 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST-VELKSL-ELG 252
           +     WNSLI+   + G  E+  +L   M   G   ++ TL + L+S  + L ++   G
Sbjct: 173 ELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG 232

Query: 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS 312
           + +H   V      D+ V TALL MY+K   L DA  LF    +++ V++N MI+ + Q+
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQT 292

Query: 313 G-----FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367
                    E+L+L   M R G +   FT  + +   + ++  E+GKQ+HA++ ++    
Sbjct: 293 EDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQS 352

Query: 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427
              + ++LI++Y          K F+S     +VSW++MI GY  + Q   AL LF E+ 
Sbjct: 353 DEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELL 412

Query: 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487
             G + D   I  +L AC ++ A    + +HGY++K G+ +L+ V  +    YAK G ++
Sbjct: 413 ASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLD 472

Query: 488 MAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547
            A   F+E  I + D+++W+ MI + A+HG       L+  MK   + P+ ITFLG+LTA
Sbjct: 473 SAKITFEE--IKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTA 530

Query: 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR 607
           C + GLVEEG   ++ MK+ Y  + + +H   +V+LL RAG + +A+  + +  F     
Sbjct: 531 CSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPV 590

Query: 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667
           +W  LLS C+++ +    +  AEKLI ++P+ + +YVLL NIY  AG      K+R  ++
Sbjct: 591 MWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMK 650

Query: 668 DRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL-GILE 710
           DRG++K PG SWIE+G  VH F   D SHP +  IY  L G+LE
Sbjct: 651 DRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLE 694



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 194/381 (50%), Gaps = 11/381 (2%)

Query: 252 GRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQ 311
           G++ H   + + F   L +    L++YSK   + +A+ LFD+MS++  + +NI+IS Y  
Sbjct: 28  GKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILISGYGG 87

Query: 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSV 371
            GF  +++ L      +  + D F+    +S+   +K+   GK +H   +  G   QV +
Sbjct: 88  MGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFL 147

Query: 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431
            N LIDMYC+CE ++ AR +F+S      VSW+S+I GY       E L+L  +M   G+
Sbjct: 148 TNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGL 207

Query: 432 EVDFVTIINILPAC-VNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489
            ++  T+ + L +C +N+  +  + K LHGY++K GL+    V TA+   YAK G +  A
Sbjct: 208 RLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDA 267

Query: 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWS-----QCFKLYTQMKQSDVRPDLITFLGL 544
            +LF      +++++ +N+MI+ + +  D       +  KL++QM++  ++P   TF  +
Sbjct: 268 IQLFRTSP--NQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSI 325

Query: 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP 604
           +  C +    E G+ I   + + +  +  +   ++++ L    G  ++  +     P K 
Sbjct: 326 IKICNHIEAFEYGKQIHAHICK-HNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTP-KL 383

Query: 605 DARVWGPLLSACKMHSETELA 625
           D   W  +++    + + E A
Sbjct: 384 DIVSWTTMIAGYAQNGQFESA 404



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 449 GALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508
           G+  H K  H + +K   N    +       Y+K G +  A +LFD  ++  + +I++N 
Sbjct: 23  GSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFD--RMSERSVISYNI 80

Query: 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560
           +IS Y   G + +   L+++ + + ++ D  ++ G+L+AC        G++I
Sbjct: 81  LISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVI 132


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/468 (37%), Positives = 258/468 (55%), Gaps = 37/468 (7%)

Query: 270 VNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG 329
           +N  L   Y+ L  L+ +  LF +  +     W  +I  +   G  +++L     M+  G
Sbjct: 64  LNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG 123

Query: 330 FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389
              + FT     SSI  +  IE GK +H+  ++ G D  + V   L+D+Y    D+  A+
Sbjct: 124 VEPNAFT----FSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQ 179

Query: 390 KIFDSVKTKTVVS-------------------------------WSSMIKGYVTHDQSLE 418
           ++FD++  K++VS                               W+ MI GY  +    E
Sbjct: 180 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 239

Query: 419 ALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478
           AL LF  M     + + VT++++L AC  +GALE  +++H Y    G+     V TA+  
Sbjct: 240 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 299

Query: 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538
            Y+KCG +E A  +FD  KID KD++ WNSMI  YA HG   +  +L+  M +  + P  
Sbjct: 300 MYSKCGSLEDARLVFD--KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTN 357

Query: 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVK 598
           ITF+G+L+AC ++G V EG  IF +MK+ YG EP  EHY  MVNLLGRAGH+++A ELVK
Sbjct: 358 ITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 417

Query: 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658
           +M  +PD  +WG LL AC++H +  L E   E L+     N+G Y+LLSNIYAA G W+G
Sbjct: 418 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDG 477

Query: 659 VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTIL 706
           VA++RT ++D G+KK PGCS IE+   VHEF A   +HP+   IY +L
Sbjct: 478 VARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMML 525



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 179/398 (44%), Gaps = 38/398 (9%)

Query: 152 KIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQN 211
           +IHA + + G D    +   L   Y    G  +    +  R        W ++I      
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASL-GRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106

Query: 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN 271
           G  E++   +  M  +G E ++ T  ++L+    L  +E G+ +H  AV   F  DL V 
Sbjct: 107 GLHEQALNFYAQMLTQGVEPNAFTFSSILK----LCPIEPGKALHSQAVKLGFDSDLYVR 162

Query: 272 T-------------------------------ALLSMYSKLASLEDAKMLFDKMSDKDRV 300
           T                               A+L+ Y+K   L+ A++LFD M ++D V
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGV 222

Query: 301 VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV 360
            WN+MI  Y Q+G P E+L L   M+++  + +  T ++ +S+   +  +E G+ +H+ +
Sbjct: 223 CWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 282

Query: 361 LRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420
             NG  + V V  +L+DMY +C  L  AR +FD +  K VV+W+SMI GY  H  S EAL
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342

Query: 421 RLFSEMKLEGVEVDFVTIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479
           +LF  M   G+    +T I IL AC + G   E     +    + G+         +   
Sbjct: 343 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 402

Query: 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHG 517
             + G +E A EL     I+  D + W +++ A   HG
Sbjct: 403 LGRAGHVEQAYELVKNMNIEP-DPVLWGTLLGACRLHG 439



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 170/348 (48%), Gaps = 40/348 (11%)

Query: 29  HMTATHSFS-LLNLCENPQHLQQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQV 87
           H  +T+  + L++  +   HL QIHA  +  HGL  + IL+  L  SYA+LG L  S  +
Sbjct: 26  HFISTNRLAVLIDKSKTISHLLQIHA-VLFRHGLDHHPILNFKLQRSYASLGRLDYSVAL 84

Query: 88  FNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147
           F    +P+   +  I+   +  G +E+ L  Y QM  Q + P   T+  +++ C      
Sbjct: 85  FGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----I 140

Query: 148 ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGG--------FEN--EKGMIQRK---- 193
             G+ +H+Q VKLGFDS   V   L++ Y +  GG        F+   EK ++       
Sbjct: 141 EPGKALHSQAVKLGFDSDLYVRTGLLDVYAR--GGDVVSAQQLFDTMPEKSLVSLTAMLT 198

Query: 194 --------------FKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235
                         F  ++ R    WN +I    QNG   ++  LF+ M    A+ +  T
Sbjct: 199 CYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVT 258

Query: 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMS 295
           ++++L +  +L +LE GR VH     +    ++ V TAL+ MYSK  SLEDA+++FDK+ 
Sbjct: 259 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 318

Query: 296 DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343
           DKD V WN MI  Y   GF +E+L+L   M R G      T I  +S+
Sbjct: 319 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 366



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 143/311 (45%), Gaps = 35/311 (11%)

Query: 344 ISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW 403
           I   K I    Q+HA + R+G D+   ++  L   Y     L+ +  +F   +  +V  W
Sbjct: 37  IDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFW 96

Query: 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463
           +++I G+       +AL  +++M  +GVE +  T  +IL  C     +E  K LH  ++K
Sbjct: 97  TAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVK 152

Query: 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDE---------------------------- 495
           LG +S   V T +   YA+ G +  A +LFD                             
Sbjct: 153 LGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 212

Query: 496 -EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554
            + ++ +D + WN MI  Y ++G  ++   L+ +M ++  +P+ +T L +L+AC   G +
Sbjct: 213 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272

Query: 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLS 614
           E GR +   + E+ G + +     ++V++  + G +++AR LV D     D   W  ++ 
Sbjct: 273 ESGRWVHSYI-ENNGIQFNVHVGTALVDMYSKCGSLEDAR-LVFDKIDDKDVVAWNSMIV 330

Query: 615 ACKMHSETELA 625
              MH  ++ A
Sbjct: 331 GYAMHGFSQEA 341



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 37/229 (16%)

Query: 16  VKFLRFPANQTRPHMTATHSFSLLNLCENPQHLQQ---IHARYIILHGLHQNLILSSNLI 72
           V F R    + +P+       S+L+ C     L+    +H+ YI  +G+  N+ + + L+
Sbjct: 242 VLFRRMLKAKAKPNEVTV--LSVLSACGQLGALESGRWVHS-YIENNGIQFNVHVGTALV 298

Query: 73  DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132
           D Y+  G L  ++ VF+ I   + + + +++   +  G  ++ L ++K M    ++P   
Sbjct: 299 DMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNI 358

Query: 133 TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR 192
           T+  ++ +C            H+  V  G+D F+ + D               E G I+ 
Sbjct: 359 TFIGILSACG-----------HSGWVTEGWDIFNKMKD---------------EYG-IEP 391

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241
           K +     +  +++L  + G  E+++EL K M +E      GTL+   R
Sbjct: 392 KIE----HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACR 436


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 215/678 (31%), Positives = 355/678 (52%), Gaps = 26/678 (3%)

Query: 50  QIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKF 109
           QIH  +++  G    + +S++L+  Y   G   L+  VF  ++ P+ + + TIL   S F
Sbjct: 105 QIHG-FVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTIL---SGF 160

Query: 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC--SCLLD---FISGEKIHAQVVKLGFDS 164
            +    L     M L  +     TY   +  C      D   F+ G ++H+ VVK GF  
Sbjct: 161 EKSVDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGC 220

Query: 165 FDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE--KSFELFK 222
              +G+ALV  Y +  G  E  +   +   +DL S WN+++S   Q G+    ++  LF 
Sbjct: 221 EVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVS-WNAMLSGYAQEGECYGLEAVLLFG 279

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M  EG   D  +L   + +    K+LE G+ +H +A    +   ++V   L+S YSK  
Sbjct: 280 NMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCK 339

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L DAK +F  MS ++ V W  +IS   ++      + L   M   G   +  T I  + 
Sbjct: 340 VLRDAKAVFQDMSARNVVSWTTLISIDEEN-----VVSLFNAMRVDGVYPNDVTFIGLLH 394

Query: 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVS 402
           +I+    ++ G  +H   L++    + +V NSLI MY + E +  ++KIF+ +  +  +S
Sbjct: 395 AITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTIS 454

Query: 403 WSSMIKGYVTHDQSLEA-LRLFSEMK-LEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460
           W+++I GY  +    EA L   S +K ++  +  F +++N + A  +I +L+H +  H +
Sbjct: 455 WNALISGYAQNGLCKEAFLTFLSAIKEIKPNQYTFGSVLNAIAAAEDI-SLKHGQRCHSH 513

Query: 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520
            +KLGLN+   V  A+   Y K G I  +  +F+E     K   +W  MISAYA+HGD+ 
Sbjct: 514 LIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETP--EKTQFSWTGMISAYARHGDYE 571

Query: 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580
               LY ++++     D ITFL +L AC   G+V+ G IIF  M + +  EP+ EHY+ M
Sbjct: 572 SVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSIM 631

Query: 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640
           V++LGR G +DEA EL+  +P  P   V   LL +CK+H   E+AE   + LI M+P ++
Sbjct: 632 VDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGSS 691

Query: 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKL----VHEFWAADQSH 696
           G YVL++N+YA  G W  VA++R  +R RG+KK  G SW+++  +    +H F + D+SH
Sbjct: 692 GPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLHLHGFSSGDKSH 751

Query: 697 PQADAIYTILGILELEIM 714
           P+++ I  +   L L+++
Sbjct: 752 PESETIDRMAEFLGLQMI 769



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 294/611 (48%), Gaps = 52/611 (8%)

Query: 85  QQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ--SMYPAEDTYPFV----- 137
             +F  I  PN+    +I +++  F        ++K +  Q  S++  +  +PF+     
Sbjct: 38  HNLFEKIPQPNA---SSINRSMLNF--------LHKNLPFQALSVFKNQTQFPFLQNIDE 86

Query: 138 ----IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQR- 192
               +   +C  +FI G +IH  VV  GF S   V ++L++ Y K  G FE    + +  
Sbjct: 87  VTLALSFKACRGEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKA-GRFELALCVFEGL 145

Query: 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLL-----RSTVELK 247
              D+ S WN+++S      KS  +      M + G  FD  T    L     R   +  
Sbjct: 146 SCPDIVS-WNTILS---GFEKSVDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDH 201

Query: 248 SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307
               G  +H + V   F  ++ +  AL++MYS+   L++A  +F++M+ +D V WN M+S
Sbjct: 202 GFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLS 261

Query: 308 AYYQSG--FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365
            Y Q G  +  E++ L   MVR G   D  +   A+S+    KN+E+GKQ+H    + G 
Sbjct: 262 GYAQEGECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGY 321

Query: 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSE 425
              V+V N LI  Y +C+ L  A+ +F  +  + VVSW+++I    + D+    + LF+ 
Sbjct: 322 GTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLI----SIDEE-NVVSLFNA 376

Query: 426 MKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485
           M+++GV  + VT I +L A      ++    +HG  +K  L+S  +V+ ++   YAK   
Sbjct: 377 MRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFES 436

Query: 486 IEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545
           I+ + ++F+E  ++ +  I+WN++IS YA++G   + F  +    + +++P+  TF  +L
Sbjct: 437 IQESKKIFEE--LNYQGTISWNALISGYAQNGLCKEAFLTFLSAIK-EIKPNQYTFGSVL 493

Query: 546 TACVNA---GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF 602
            A   A    L    R     +K     +P      +++++ G+ G+++E++ +  + P 
Sbjct: 494 NAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVA--GALLDMYGKRGNINESQRVFNETPE 551

Query: 603 KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662
           K     W  ++SA   H + E + ++  K I  E  N  +   LS + A   K  G+  +
Sbjct: 552 KTQFS-WTGMISAYARHGDYE-SVMSLYKEIEREGSNLDSITFLSVLAACCRK--GMVDV 607

Query: 663 RTFLRDRGLKK 673
              + D  +KK
Sbjct: 608 GHIIFDSMVKK 618


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 333/625 (53%), Gaps = 119/625 (19%)

Query: 102 ILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161
           +L+  S   ++ K +L+Y+QM    + P    YP +I+S         G   HA V+KLG
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLG 55

Query: 162 FDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELF 221
             S   V +A+++ Y               RK  D    WN+++S   +     ++  LF
Sbjct: 56  HGSDAFVRNAVIDMY--------------ARKVAD----WNAMVSGYWKWESEGQAQWLF 97

Query: 222 KLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281
            +M                                         +++   TA+++ Y+K+
Sbjct: 98  DVMPE---------------------------------------RNVITWTAMVTGYAKV 118

Query: 282 ASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341
             LE A+  FD M ++  V WN M+S Y Q+G  +E+L L   M+   +R          
Sbjct: 119 KDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML-GAYR---------- 167

Query: 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401
                  ++ W                    N++I  Y    DL+ ARK+F+++  + VV
Sbjct: 168 ------NSVTW--------------------NAMISAYMRVGDLDSARKLFNTMPGRNVV 201

Query: 402 SWSSMIKGYVTHDQSLEALRLFSEM-KLEGVEVDFVTIINILPACVNIGALEH----VKY 456
           +W+SMI GY  + QS  A+ LF EM   + +  D VT+++++ AC ++GALE     V++
Sbjct: 202 TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRF 261

Query: 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH 516
           L    +KL   S+S  N  IF+ Y++CG +E A  +F E  + ++D++++N++IS +A H
Sbjct: 262 LTENQIKL---SISGHNAMIFM-YSRCGSMEDAKRVFQE--MATRDVVSYNTLISGFAAH 315

Query: 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576
           G   +   L + MK+  + PD +TF+G+LTAC +AGL+EEGR +F+ +K+     P+ +H
Sbjct: 316 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDH 370

Query: 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME 636
           YA MV+LLGR G +++A+  ++ MP +P A V+G LL+A ++H + EL EL A KL  +E
Sbjct: 371 YACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELE 430

Query: 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSH 696
           P+N+GN++LLSNIYA+AG+W  V ++R  ++  G+KKT G SW+E G  +H+F  AD+SH
Sbjct: 431 PDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSH 490

Query: 697 PQADAIYTILGILELEIMEGRRESS 721
            ++D IY +L    +E+ +  RE+ 
Sbjct: 491 ERSDDIYQLL----IELRKKMREAG 511



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 115/246 (46%), Gaps = 26/246 (10%)

Query: 60  GLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVY 119
           G ++N +  + +I +Y  +G L  ++++FN++   N + + +++   ++ G+    + ++
Sbjct: 164 GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELF 223

Query: 120 KQM-ALQSMYPAEDTYPFVIRSCSCLLDFISGEKI----HAQVVKLGFDSFDDVGDALVE 174
           K+M   + + P E T   VI +C  L     G  +        +KL         +A++ 
Sbjct: 224 KEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH----NAMIF 279

Query: 175 FYIKCDGGFENEKGMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAE 230
            Y +C G  E+ K    R F+++ +R    +N+LIS    +G   ++  L   M+  G E
Sbjct: 280 MYSRC-GSMEDAK----RVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 334

Query: 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVN--TALLSMYSKLASLEDAK 288
            D  T I +L +      LE GR V       +  KD +++    ++ +  ++  LEDAK
Sbjct: 335 PDRVTFIGVLTACSHAGLLEEGRKVF------ESIKDPAIDHYACMVDLLGRVGELEDAK 388

Query: 289 MLFDKM 294
              ++M
Sbjct: 389 RTMERM 394


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 289/528 (54%), Gaps = 46/528 (8%)

Query: 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260
           WN +I   ++N K  K+   +  M ++ A  +  T   L ++    ++++ GR +H   V
Sbjct: 101 WNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVV 159

Query: 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLE 320
                 D+ + +A + MY+    LEDA+ +F    + D V WN MI  Y + G  + +  
Sbjct: 160 KHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKG 218

Query: 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNI-EWGKQMHANVLRNGSDYQVSVHNSLIDMY 379
           L   M                     +KNI  W      NV+ NG               
Sbjct: 219 LFAQM--------------------PVKNIGSW------NVMING--------------L 238

Query: 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439
            +  +L  ARK+FD +  +  +SWSSM+ GY++  +  EAL +F +M+ E        + 
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499
           ++L AC NIGA++  +++H Y  +  +   + + TA+   YAKCG ++M  E+F+E K  
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK-- 356

Query: 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559
            ++I TWN+MI   A HG      +L++++++  ++P+ IT +G+LTAC +AG V++G  
Sbjct: 357 EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLR 416

Query: 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619
           IF+ M+E YG +P  EHY  MV+LLGR+G   EA +L+  MP KP+A VWG LL AC++H
Sbjct: 417 IFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIH 476

Query: 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679
              +LAE   + L+ +EP+N+G YVLLSNIYA  G+++ V+K+R  ++DRG+K  PG S 
Sbjct: 477 GNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSI 536

Query: 680 IEIGKLVHEFWAADQSHPQADAIYTILGILELEI-MEGRRESSEELKF 726
           +++   VHEF   D SHPQ   IY  L I++  + M G    + ++ F
Sbjct: 537 VDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLF 584



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 176/410 (42%), Gaps = 73/410 (17%)

Query: 46  QHLQQIHARYIILHGLHQNLILSSNLIDSYAN--LGLLSLSQQVFNSITSPNSLLYGTIL 103
           Q+L Q+H   ++  G  Q+  +S  L+  YAN        + +VF+SI +PN  ++  ++
Sbjct: 47  QYLTQLHG-LVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVI 105

Query: 104 KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG-- 161
           K   +  +  K +  Y +M + +  P + TYP + ++CS       G +IH  VVK G  
Sbjct: 106 KGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIG 164

Query: 162 ------------FDSFDDVGDA----------------LVEFYIKCDGGFENEKGMI--- 190
                       + SF  + DA                +++ Y+KC G  E  KG+    
Sbjct: 165 SDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKC-GVLEAAKGLFAQM 223

Query: 191 ------------------------QRKFKDLKSR----WNSLISLAVQNGKSEKSFELFK 222
                                   ++ F ++  R    W+S++   +  G+ +++ E+F+
Sbjct: 224 PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQ 283

Query: 223 LMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282
            M+ E        L ++L +   + +++ GR VH     +    D  + TALL MY+K  
Sbjct: 284 QMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCG 343

Query: 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVS 342
            L+    +F++M +++   WN MI      G  +++LEL   +     + +  T +  ++
Sbjct: 344 RLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT 403

Query: 343 SISTMKNIEWGKQMHANVLR-NGSDYQVSVHNSLID------MYCECEDL 385
           + +    ++ G ++   +    G D ++  +  ++D      ++ E EDL
Sbjct: 404 ACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDL 453



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 112/247 (45%), Gaps = 17/247 (6%)

Query: 71  LIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130
           +I+  A  G L  ++++F+ ++  + + + +++      G Y++ L +++QM  +   P 
Sbjct: 234 MINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPG 293

Query: 131 EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKC---DGGFENEK 187
                 V+ +CS +     G  +HA + +        +G AL++ Y KC   D G+E   
Sbjct: 294 RFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWE--- 350

Query: 188 GMIQRKFKDLKSR----WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243
                 F+++K R    WN++I     +G++E + ELF  ++    + +  TL+ +L + 
Sbjct: 351 -----VFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTAC 405

Query: 244 VELKSLELG-RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-DRVV 301
                ++ G RI   +        +L     ++ +  +     +A+ L + M  K +  V
Sbjct: 406 AHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAV 465

Query: 302 WNIMISA 308
           W  ++ A
Sbjct: 466 WGALLGA 472


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,634,746,319
Number of Sequences: 23463169
Number of extensions: 420682182
Number of successful extensions: 1198249
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9059
Number of HSP's successfully gapped in prelim test: 2718
Number of HSP's that attempted gapping in prelim test: 1001298
Number of HSP's gapped (non-prelim): 66434
length of query: 727
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 577
effective length of database: 8,839,720,017
effective search space: 5100518449809
effective search space used: 5100518449809
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)