BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004856
         (727 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
           (Lap1)
 pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
           (Lap1)
 pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
           Aminopeptidase-Zinc Complex (Lap1)
          Length = 491

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 156 QVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSE 215
           Q V  G  S   VG   V   +  +G F+     + +KF      WNS+IS    +G+  
Sbjct: 11  QAVGDGLTSLIIVGKKSVLKNVTFEGKFKE----VAQKFVTDGDSWNSMISRIPASGRHP 66

Query: 216 KSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR----------------IVHCVA 259
             +EL  L+ +  A     T  N      ELK +                    + H  A
Sbjct: 67  LHYELAHLITVPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFAEYPDVLSHVAA 126

Query: 260 VVSDFCK 266
           +   FCK
Sbjct: 127 IARTFCK 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,794,333
Number of Sequences: 62578
Number of extensions: 771228
Number of successful extensions: 1859
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1856
Number of HSP's gapped (non-prelim): 6
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)