Query 004856
Match_columns 727
No_of_seqs 774 out of 4240
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 14:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-109 2E-114 949.9 79.8 695 18-721 74-773 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5.5E-83 1.2E-87 712.3 64.1 526 194-721 83-610 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 6.1E-83 1.3E-87 729.4 64.8 576 92-675 47-625 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4.7E-71 1E-75 616.4 54.3 475 93-573 84-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 5.3E-70 1.1E-74 608.5 53.2 523 62-607 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.1E-65 1.5E-69 567.4 58.3 505 127-636 366-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-33 6.5E-38 328.3 65.1 582 72-667 302-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-32 1.1E-36 317.8 68.7 595 63-670 191-867 (899)
9 PRK11447 cellulose synthase su 100.0 6.2E-24 1.3E-28 249.4 63.1 588 62-668 59-739 (1157)
10 PRK11447 cellulose synthase su 100.0 7.9E-24 1.7E-28 248.5 57.8 587 70-670 33-701 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 4.8E-24 1E-28 210.5 34.4 506 203-721 53-622 (966)
12 PRK09782 bacteriophage N4 rece 99.9 1.2E-20 2.6E-25 211.3 60.1 563 77-669 56-706 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-18 3.4E-23 194.4 59.6 581 63-671 76-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-20 3.2E-25 186.1 29.5 420 238-670 53-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-17 2.3E-22 184.8 42.7 420 201-669 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.8 1.6E-18 3.5E-23 181.8 32.5 293 378-677 44-355 (389)
17 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.3E-21 176.1 41.7 352 280-640 17-386 (656)
18 PRK11788 tetratricopeptide rep 99.8 5.7E-18 1.2E-22 177.7 29.9 222 373-600 111-344 (389)
19 KOG2002 TPR-containing nuclear 99.8 1.3E-15 2.9E-20 159.6 45.3 576 81-672 146-801 (1018)
20 PRK10049 pgaA outer membrane p 99.8 1.3E-15 2.7E-20 171.4 46.7 401 232-640 14-461 (765)
21 PRK10049 pgaA outer membrane p 99.8 2E-15 4.4E-20 169.8 42.8 393 267-670 14-457 (765)
22 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.6E-20 166.8 38.6 329 333-670 41-382 (656)
23 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.2E-19 138.0 39.3 443 96-600 116-587 (625)
24 KOG2002 TPR-containing nuclear 99.8 4.6E-14 1E-18 148.3 46.2 413 251-670 254-746 (1018)
25 TIGR00990 3a0801s09 mitochondr 99.8 9.6E-15 2.1E-19 161.5 42.1 246 348-600 308-568 (615)
26 PRK14574 hmsH outer membrane p 99.8 5.1E-14 1.1E-18 155.2 45.9 428 207-642 43-520 (822)
27 PRK14574 hmsH outer membrane p 99.7 8.7E-14 1.9E-18 153.3 45.3 418 244-666 45-510 (822)
28 KOG4422 Uncharacterized conser 99.7 3.3E-14 7.1E-19 135.7 32.0 255 95-381 206-480 (625)
29 KOG0495 HAT repeat protein [RN 99.7 7.7E-11 1.7E-15 118.9 54.2 494 138-681 383-890 (913)
30 KOG2003 TPR repeat-containing 99.7 6.5E-14 1.4E-18 134.4 30.5 491 103-664 208-717 (840)
31 KOG0495 HAT repeat protein [RN 99.7 1.2E-10 2.6E-15 117.6 50.5 438 217-670 365-847 (913)
32 KOG4318 Bicoid mRNA stability 99.7 1.6E-12 3.5E-17 135.2 37.3 603 53-675 14-814 (1088)
33 KOG4318 Bicoid mRNA stability 99.6 1.9E-12 4.2E-17 134.6 36.6 524 117-673 11-598 (1088)
34 KOG2076 RNA polymerase III tra 99.6 6.6E-11 1.4E-15 124.3 44.5 536 110-651 153-785 (895)
35 KOG2076 RNA polymerase III tra 99.6 3.5E-10 7.7E-15 118.9 48.0 576 79-664 153-890 (895)
36 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.4E-19 144.4 12.2 256 408-668 16-276 (280)
37 KOG0547 Translocase of outer m 99.6 1.8E-11 4E-16 119.3 31.1 405 202-668 119-565 (606)
38 KOG2003 TPR repeat-containing 99.5 1.3E-11 2.8E-16 118.9 29.0 436 205-669 208-689 (840)
39 KOG1155 Anaphase-promoting com 99.5 4.7E-11 1E-15 115.8 30.1 194 470-668 330-535 (559)
40 KOG1915 Cell cycle control pro 99.5 3.3E-09 7.2E-14 103.4 40.0 265 400-668 322-624 (677)
41 PRK10747 putative protoheme IX 99.5 1.2E-10 2.6E-15 120.9 31.6 277 382-668 97-389 (398)
42 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.5E-16 125.8 23.0 277 384-670 334-621 (638)
43 KOG1126 DNA-binding cell divis 99.5 1.4E-11 2.9E-16 125.4 23.1 247 414-669 333-586 (638)
44 PRK10747 putative protoheme IX 99.5 1.1E-10 2.4E-15 121.1 30.8 255 345-635 129-390 (398)
45 KOG1915 Cell cycle control pro 99.4 1.5E-09 3.3E-14 105.7 35.1 415 282-709 87-536 (677)
46 KOG1155 Anaphase-promoting com 99.4 3.9E-09 8.5E-14 102.8 37.4 286 307-599 235-532 (559)
47 TIGR00540 hemY_coli hemY prote 99.4 3.1E-10 6.6E-15 118.7 32.1 292 311-634 96-398 (409)
48 TIGR00540 hemY_coli hemY prote 99.4 2.3E-10 5E-15 119.6 30.1 284 279-600 95-396 (409)
49 KOG2047 mRNA splicing factor [ 99.4 7.6E-08 1.6E-12 97.7 45.8 446 66-566 103-614 (835)
50 PF13429 TPR_15: Tetratricopep 99.4 2.5E-12 5.5E-17 127.5 11.2 128 469-599 145-273 (280)
51 KOG1173 Anaphase-promoting com 99.4 3.1E-09 6.6E-14 106.3 32.3 257 407-669 251-518 (611)
52 KOG2376 Signal recognition par 99.4 1.9E-08 4E-13 101.2 37.8 436 205-665 19-516 (652)
53 TIGR02521 type_IV_pilW type IV 99.4 2.5E-10 5.3E-15 110.4 24.3 201 468-669 29-232 (234)
54 COG2956 Predicted N-acetylgluc 99.4 1.7E-09 3.8E-14 100.4 27.5 311 311-689 47-367 (389)
55 PF13041 PPR_2: PPR repeat fam 99.3 1.6E-12 3.6E-17 89.8 4.9 50 94-143 1-50 (50)
56 COG3071 HemY Uncharacterized e 99.3 7.4E-09 1.6E-13 99.5 29.6 281 312-634 97-389 (400)
57 KOG3785 Uncharacterized conser 99.3 7E-09 1.5E-13 97.4 28.3 316 282-643 165-497 (557)
58 PF13041 PPR_2: PPR repeat fam 99.3 5.7E-12 1.2E-16 87.1 5.7 50 196-245 1-50 (50)
59 KOG1174 Anaphase-promoting com 99.3 3.8E-08 8.3E-13 94.5 32.6 308 331-644 191-509 (564)
60 COG3071 HemY Uncharacterized e 99.3 9.8E-09 2.1E-13 98.7 27.3 285 211-565 97-388 (400)
61 COG2956 Predicted N-acetylgluc 99.2 2.8E-08 6.1E-13 92.6 28.7 253 412-669 47-311 (389)
62 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3E-13 105.0 28.8 232 436-667 200-477 (508)
63 KOG0985 Vesicle coat protein c 99.2 1.1E-06 2.4E-11 93.6 42.7 464 68-560 609-1242(1666)
64 KOG4162 Predicted calmodulin-b 99.2 8.4E-07 1.8E-11 92.5 40.5 127 541-669 653-783 (799)
65 PRK12370 invasion protein regu 99.2 5.3E-09 1.2E-13 113.7 26.2 245 416-670 277-536 (553)
66 KOG2047 mRNA splicing factor [ 99.2 1.7E-06 3.7E-11 88.2 40.3 265 401-669 388-687 (835)
67 KOG1173 Anaphase-promoting com 99.2 1E-07 2.2E-12 95.6 31.4 263 298-565 243-516 (611)
68 KOG3616 Selective LIM binding 99.2 3.2E-07 6.9E-12 94.3 34.7 341 272-665 619-962 (1636)
69 KOG3617 WD40 and TPR repeat-co 99.2 5E-07 1.1E-11 94.2 35.8 541 62-669 723-1359(1416)
70 KOG0547 Translocase of outer m 99.1 9.9E-08 2.1E-12 93.9 29.0 404 99-565 118-564 (606)
71 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-08 2.7E-13 101.3 23.3 213 450-671 41-267 (296)
72 TIGR02521 type_IV_pilW type IV 99.1 3.6E-08 7.7E-13 95.2 24.9 199 400-635 31-232 (234)
73 KOG1129 TPR repeat-containing 99.1 3.3E-09 7.2E-14 98.5 15.8 228 404-670 227-459 (478)
74 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.8E-12 98.0 28.4 237 370-634 200-478 (508)
75 KOG1129 TPR repeat-containing 99.1 7.1E-09 1.5E-13 96.4 16.8 191 474-669 227-424 (478)
76 PRK12370 invasion protein regu 99.1 2.4E-08 5.2E-13 108.6 24.0 212 450-669 276-502 (553)
77 KOG0985 Vesicle coat protein c 99.1 4.8E-05 1E-09 81.7 52.0 159 483-666 1088-1246(1666)
78 KOG1174 Anaphase-promoting com 99.0 4.4E-06 9.5E-11 80.8 33.2 263 265-531 229-499 (564)
79 COG3063 PilF Tfp pilus assembl 99.0 5E-08 1.1E-12 86.9 18.2 162 505-671 37-204 (250)
80 PRK11189 lipoprotein NlpI; Pro 99.0 2.8E-07 6.1E-12 91.6 26.2 228 414-649 40-280 (296)
81 KOG3616 Selective LIM binding 99.0 7.9E-05 1.7E-09 77.3 42.5 122 544-666 1245-1388(1636)
82 KOG2376 Signal recognition par 99.0 7.7E-06 1.7E-10 82.9 34.7 371 175-561 86-514 (652)
83 KOG1156 N-terminal acetyltrans 99.0 9.9E-06 2.2E-10 83.1 35.2 419 210-671 19-470 (700)
84 KOG1156 N-terminal acetyltrans 99.0 6.6E-06 1.4E-10 84.3 33.8 383 244-670 18-435 (700)
85 KOG4162 Predicted calmodulin-b 98.9 1.1E-05 2.3E-10 84.6 35.6 433 162-641 319-789 (799)
86 KOG3617 WD40 and TPR repeat-co 98.9 7.4E-06 1.6E-10 85.8 33.4 61 92-158 722-784 (1416)
87 KOG0624 dsRNA-activated protei 98.9 1.4E-05 3E-10 75.5 29.8 289 375-669 44-370 (504)
88 KOG1127 TPR repeat-containing 98.9 2.8E-05 6E-10 83.6 35.2 454 193-668 591-1103(1238)
89 PF12569 NARP1: NMDA receptor- 98.8 1.4E-06 3.1E-11 91.4 25.6 261 377-671 12-293 (517)
90 PF04733 Coatomer_E: Coatomer 98.8 3.7E-07 7.9E-12 89.3 19.4 147 513-669 112-265 (290)
91 KOG3785 Uncharacterized conser 98.8 3.1E-05 6.8E-10 73.4 30.8 441 205-670 29-491 (557)
92 COG3063 PilF Tfp pilus assembl 98.8 2.5E-06 5.3E-11 76.3 22.3 167 470-639 69-240 (250)
93 KOG1125 TPR repeat-containing 98.8 1.6E-07 3.5E-12 94.7 16.8 217 447-669 297-527 (579)
94 PF12569 NARP1: NMDA receptor- 98.8 5.6E-06 1.2E-10 87.1 28.7 249 341-600 11-288 (517)
95 KOG4340 Uncharacterized conser 98.7 1.4E-05 3.1E-10 73.9 24.3 415 228-669 5-443 (459)
96 cd05804 StaR_like StaR_like; a 98.7 3.5E-05 7.7E-10 79.7 30.8 295 372-670 9-337 (355)
97 PF12854 PPR_1: PPR repeat 98.6 3E-08 6.6E-13 61.2 3.6 34 59-92 1-34 (34)
98 KOG0548 Molecular co-chaperone 98.6 2.9E-05 6.2E-10 78.2 26.0 89 581-669 365-455 (539)
99 PF04733 Coatomer_E: Coatomer 98.6 2.2E-06 4.8E-11 83.8 17.8 154 478-640 110-270 (290)
100 KOG0548 Molecular co-chaperone 98.6 0.00016 3.5E-09 73.0 30.4 433 206-664 10-484 (539)
101 KOG1127 TPR repeat-containing 98.6 2.8E-05 6.1E-10 83.6 26.2 380 268-665 492-909 (1238)
102 TIGR03302 OM_YfiO outer membra 98.6 5.2E-06 1.1E-10 80.0 19.7 182 468-669 31-232 (235)
103 KOG0624 dsRNA-activated protei 98.6 0.00037 7.9E-09 66.2 30.0 315 300-643 39-378 (504)
104 PRK04841 transcriptional regul 98.6 0.00015 3.2E-09 85.4 34.8 324 346-669 386-760 (903)
105 cd05804 StaR_like StaR_like; a 98.6 0.00017 3.7E-09 74.6 30.9 269 400-670 6-294 (355)
106 KOG4340 Uncharacterized conser 98.6 2.3E-05 4.9E-10 72.6 20.9 180 482-665 124-335 (459)
107 PRK15359 type III secretion sy 98.6 2.4E-06 5.3E-11 74.4 14.3 123 524-652 14-138 (144)
108 PRK04841 transcriptional regul 98.5 0.00034 7.5E-09 82.3 36.4 363 275-638 348-763 (903)
109 KOG1070 rRNA processing protei 98.5 1.1E-05 2.5E-10 89.4 21.3 202 467-672 1455-1666(1710)
110 PLN02789 farnesyltranstransfer 98.5 5E-05 1.1E-09 75.4 24.3 170 480-653 81-268 (320)
111 PRK10370 formate-dependent nit 98.5 1.1E-05 2.5E-10 74.4 18.1 118 551-670 52-174 (198)
112 COG5010 TadD Flp pilus assembl 98.5 2E-05 4.4E-10 72.3 18.8 154 507-663 70-225 (257)
113 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 57.3 4.1 33 364-396 2-34 (34)
114 PRK15179 Vi polysaccharide bio 98.5 1.6E-05 3.5E-10 87.0 20.9 140 502-646 85-228 (694)
115 PRK15359 type III secretion sy 98.4 4.4E-06 9.5E-11 72.9 13.0 107 559-670 14-122 (144)
116 KOG1125 TPR repeat-containing 98.4 6.7E-05 1.5E-09 76.3 21.7 215 346-565 297-525 (579)
117 KOG1128 Uncharacterized conser 98.4 1.6E-05 3.4E-10 82.9 17.4 214 440-671 403-618 (777)
118 KOG1070 rRNA processing protei 98.4 0.00012 2.7E-09 81.6 24.1 233 433-668 1455-1699(1710)
119 TIGR03302 OM_YfiO outer membra 98.4 4E-05 8.6E-10 73.9 18.8 184 433-637 31-234 (235)
120 PRK10370 formate-dependent nit 98.3 5.2E-05 1.1E-09 70.0 18.2 154 478-645 24-183 (198)
121 KOG1128 Uncharacterized conser 98.3 1.8E-05 3.9E-10 82.5 16.1 190 464-670 392-583 (777)
122 PLN02789 farnesyltranstransfer 98.3 0.00014 2.9E-09 72.4 20.8 190 477-669 44-250 (320)
123 COG5010 TadD Flp pilus assembl 98.3 7.1E-05 1.5E-09 68.8 16.6 134 534-670 62-198 (257)
124 PRK15179 Vi polysaccharide bio 98.3 0.00024 5.2E-09 78.0 23.9 145 465-613 81-229 (694)
125 KOG1914 mRNA cleavage and poly 98.2 0.0081 1.8E-07 61.1 38.0 173 416-591 347-527 (656)
126 TIGR00756 PPR pentatricopeptid 98.2 1.6E-06 3.5E-11 54.6 4.2 35 97-131 1-35 (35)
127 PRK14720 transcript cleavage f 98.2 0.00013 2.9E-09 80.7 21.5 149 472-651 118-268 (906)
128 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.7E-11 54.0 4.2 35 199-233 1-35 (35)
129 PRK15363 pathogenicity island 98.2 1.6E-05 3.4E-10 67.9 10.4 96 574-669 35-132 (157)
130 COG4783 Putative Zn-dependent 98.2 0.00032 6.9E-09 70.3 20.2 136 512-669 315-454 (484)
131 KOG3060 Uncharacterized conser 98.1 0.00096 2.1E-08 61.0 21.1 164 476-644 58-229 (289)
132 KOG3081 Vesicle coat complex C 98.1 0.0024 5.3E-08 58.9 23.7 69 590-658 189-259 (299)
133 PF13812 PPR_3: Pentatricopept 98.1 4E-06 8.6E-11 52.3 4.0 34 96-129 1-34 (34)
134 TIGR02552 LcrH_SycD type III s 98.1 0.0001 2.2E-09 63.9 13.7 94 576-669 19-114 (135)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.7E-05 1.7E-09 75.5 14.2 122 541-667 172-295 (395)
136 COG4783 Putative Zn-dependent 98.1 0.0009 2E-08 67.2 21.1 137 480-635 316-454 (484)
137 PF13812 PPR_3: Pentatricopept 98.0 6.6E-06 1.4E-10 51.3 4.0 34 198-231 1-34 (34)
138 KOG1914 mRNA cleavage and poly 98.0 0.026 5.7E-07 57.5 36.2 426 230-660 17-530 (656)
139 TIGR02552 LcrH_SycD type III s 98.0 0.00022 4.7E-09 61.8 14.0 113 525-641 5-120 (135)
140 KOG3081 Vesicle coat complex C 98.0 0.0032 6.9E-08 58.2 21.3 155 477-640 115-276 (299)
141 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.7E-10 48.1 3.4 31 97-127 1-31 (31)
142 KOG3060 Uncharacterized conser 97.8 0.0023 5E-08 58.6 17.9 162 505-670 54-221 (289)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00067 1.4E-08 68.9 16.2 126 472-603 171-297 (395)
144 PF09976 TPR_21: Tetratricopep 97.8 0.00072 1.6E-08 59.2 14.2 114 516-632 24-144 (145)
145 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 4.9E-10 47.5 3.3 31 199-229 1-31 (31)
146 PF09976 TPR_21: Tetratricopep 97.8 0.0017 3.7E-08 56.8 16.4 84 580-664 54-142 (145)
147 PRK14720 transcript cleavage f 97.7 0.0073 1.6E-07 67.4 23.3 240 229-514 26-268 (906)
148 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00042 9.2E-09 58.3 11.2 101 540-640 4-110 (119)
149 KOG0550 Molecular chaperone (D 97.7 0.0013 2.8E-08 64.3 15.2 164 501-669 166-350 (486)
150 cd00189 TPR Tetratricopeptide 97.7 0.00035 7.7E-09 55.8 9.9 92 577-668 3-96 (100)
151 KOG0553 TPR repeat-containing 97.7 0.00024 5.3E-09 66.7 9.6 99 545-646 88-189 (304)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00088 1.9E-08 56.4 12.5 93 577-669 5-105 (119)
153 PF12895 Apc3: Anaphase-promot 97.7 5.5E-05 1.2E-09 59.0 4.5 77 588-665 3-83 (84)
154 PLN03088 SGT1, suppressor of 97.7 0.00069 1.5E-08 69.1 13.5 102 545-648 9-112 (356)
155 PF13414 TPR_11: TPR repeat; P 97.7 0.00013 2.8E-09 54.4 6.1 64 605-668 2-66 (69)
156 PRK10153 DNA-binding transcrip 97.6 0.0023 5E-08 68.2 17.2 139 500-640 334-487 (517)
157 PF05843 Suf: Suppressor of fo 97.6 0.0018 4E-08 63.6 15.3 133 504-639 2-140 (280)
158 KOG0553 TPR repeat-containing 97.6 0.0011 2.3E-08 62.5 12.7 101 510-615 88-191 (304)
159 PF14559 TPR_19: Tetratricopep 97.6 0.00017 3.7E-09 53.5 5.9 53 617-669 2-54 (68)
160 KOG2053 Mitochondrial inherita 97.5 0.2 4.4E-06 54.7 40.7 183 209-394 54-251 (932)
161 COG4700 Uncharacterized protei 97.5 0.016 3.6E-07 50.4 17.6 155 511-669 64-222 (251)
162 PF13432 TPR_16: Tetratricopep 97.5 0.00028 6.1E-09 51.8 6.4 57 613-669 4-60 (65)
163 PRK02603 photosystem I assembl 97.5 0.0035 7.7E-08 56.7 14.5 129 503-655 35-166 (172)
164 PF04840 Vps16_C: Vps16, C-ter 97.5 0.15 3.2E-06 50.8 31.2 108 474-600 181-288 (319)
165 PRK15363 pathogenicity island 97.4 0.0059 1.3E-07 52.5 13.8 97 475-572 40-137 (157)
166 PLN03088 SGT1, suppressor of 97.4 0.0022 4.9E-08 65.4 13.5 103 509-616 8-113 (356)
167 COG4235 Cytochrome c biogenesi 97.4 0.0019 4.2E-08 61.2 11.5 102 571-672 153-259 (287)
168 PF04840 Vps16_C: Vps16, C-ter 97.4 0.17 3.7E-06 50.4 26.6 110 540-666 179-288 (319)
169 PRK02603 photosystem I assembl 97.4 0.0019 4E-08 58.5 11.2 79 577-655 38-121 (172)
170 CHL00033 ycf3 photosystem I as 97.4 0.0016 3.4E-08 58.8 10.5 93 574-666 35-139 (168)
171 cd00189 TPR Tetratricopeptide 97.4 0.0027 5.8E-08 50.5 10.9 91 506-599 3-93 (100)
172 PF13432 TPR_16: Tetratricopep 97.3 0.00099 2.1E-08 48.8 6.4 61 580-640 3-65 (65)
173 PF12895 Apc3: Anaphase-promot 97.2 0.00099 2.2E-08 51.8 6.5 80 516-599 2-83 (84)
174 KOG1538 Uncharacterized conser 97.2 0.068 1.5E-06 55.7 20.7 51 540-600 749-799 (1081)
175 PF14938 SNAP: Soluble NSF att 97.2 0.02 4.3E-07 56.6 17.1 24 508-531 160-183 (282)
176 PRK15331 chaperone protein Sic 97.2 0.0034 7.4E-08 54.2 9.8 89 580-668 43-133 (165)
177 PF13371 TPR_9: Tetratricopept 97.2 0.0012 2.6E-08 49.8 6.4 57 614-670 3-59 (73)
178 KOG2280 Vacuolar assembly/sort 97.2 0.33 7.1E-06 52.0 25.4 135 226-361 425-573 (829)
179 PF08579 RPM2: Mitochondrial r 97.1 0.012 2.6E-07 46.8 11.4 79 507-586 29-116 (120)
180 PF13431 TPR_17: Tetratricopep 97.1 0.00029 6.4E-09 43.3 2.0 34 628-661 1-34 (34)
181 PRK10153 DNA-binding transcrip 97.1 0.016 3.4E-07 62.0 16.1 133 534-670 333-483 (517)
182 CHL00033 ycf3 photosystem I as 97.1 0.031 6.7E-07 50.3 16.0 80 503-585 35-117 (168)
183 PF08579 RPM2: Mitochondrial r 97.1 0.006 1.3E-07 48.5 9.5 79 303-381 29-116 (120)
184 KOG2041 WD40 repeat protein [G 97.1 0.52 1.1E-05 50.0 26.1 153 246-426 747-904 (1189)
185 KOG1130 Predicted G-alpha GTPa 97.1 0.0029 6.4E-08 61.8 9.3 129 540-668 197-343 (639)
186 PF05843 Suf: Suppressor of fo 97.1 0.021 4.6E-07 56.1 15.7 128 402-531 3-135 (280)
187 PF10037 MRP-S27: Mitochondria 97.1 0.0075 1.6E-07 61.7 12.5 123 429-551 60-186 (429)
188 KOG2796 Uncharacterized conser 97.1 0.092 2E-06 48.6 17.8 170 372-543 139-324 (366)
189 KOG2053 Mitochondrial inherita 97.0 0.72 1.6E-05 50.6 42.0 219 207-430 18-256 (932)
190 PF10037 MRP-S27: Mitochondria 97.0 0.015 3.2E-07 59.5 14.0 118 399-516 65-186 (429)
191 PF07079 DUF1347: Protein of u 97.0 0.48 1E-05 47.8 35.1 232 428-666 253-521 (549)
192 PF13414 TPR_11: TPR repeat; P 97.0 0.0014 3E-08 48.7 4.8 64 574-637 3-69 (69)
193 PF06239 ECSIT: Evolutionarily 97.0 0.019 4E-07 52.0 12.4 104 433-553 45-153 (228)
194 PRK10803 tol-pal system protei 96.9 0.012 2.6E-07 56.7 11.9 57 612-668 186-245 (263)
195 COG4700 Uncharacterized protei 96.9 0.16 3.4E-06 44.5 16.7 131 500-630 86-217 (251)
196 PF06239 ECSIT: Evolutionarily 96.9 0.01 2.2E-07 53.6 10.0 99 490-589 34-153 (228)
197 PF12688 TPR_5: Tetratrico pep 96.8 0.017 3.8E-07 47.8 10.4 55 545-600 8-64 (120)
198 PRK10866 outer membrane biogen 96.8 0.22 4.7E-06 47.7 19.3 171 476-667 38-239 (243)
199 PF14938 SNAP: Soluble NSF att 96.8 0.65 1.4E-05 45.9 28.1 61 471-531 156-224 (282)
200 PF12688 TPR_5: Tetratrico pep 96.8 0.035 7.5E-07 46.1 11.8 92 509-600 7-101 (120)
201 KOG0550 Molecular chaperone (D 96.8 0.46 9.9E-06 47.3 20.9 20 643-662 417-436 (486)
202 KOG1538 Uncharacterized conser 96.7 0.36 7.8E-06 50.6 20.9 214 256-533 623-847 (1081)
203 KOG2041 WD40 repeat protein [G 96.7 1.1 2.3E-05 47.7 25.9 124 182-323 748-876 (1189)
204 KOG2796 Uncharacterized conser 96.7 0.17 3.8E-06 46.9 16.6 135 505-640 179-320 (366)
205 PF14559 TPR_19: Tetratricopep 96.7 0.0098 2.1E-07 43.9 7.6 48 551-600 4-51 (68)
206 KOG0543 FKBP-type peptidyl-pro 96.7 0.013 2.9E-07 57.9 10.3 63 607-669 258-320 (397)
207 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0089 1.9E-07 60.5 8.7 62 574-635 75-141 (453)
208 COG4235 Cytochrome c biogenesi 96.6 0.099 2.1E-06 50.0 15.0 103 536-640 154-261 (287)
209 PF13281 DUF4071: Domain of un 96.6 0.44 9.4E-06 48.0 20.1 160 476-639 147-338 (374)
210 PF13371 TPR_9: Tetratricopept 96.5 0.0083 1.8E-07 45.1 6.2 63 582-644 3-67 (73)
211 PF13428 TPR_14: Tetratricopep 96.5 0.0049 1.1E-07 40.7 4.1 41 608-648 3-43 (44)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.2 2.6E-05 44.9 28.2 71 61-131 38-111 (660)
213 COG3898 Uncharacterized membra 96.4 1.2 2.6E-05 44.1 29.4 273 382-668 97-391 (531)
214 PF09205 DUF1955: Domain of un 96.4 0.36 7.8E-06 39.8 14.6 140 514-672 13-152 (161)
215 PF03704 BTAD: Bacterial trans 96.3 0.077 1.7E-06 46.4 12.2 107 548-668 16-124 (146)
216 PRK10803 tol-pal system protei 96.2 0.08 1.7E-06 51.1 12.4 52 514-567 154-209 (263)
217 PRK10866 outer membrane biogen 96.1 1.3 2.9E-05 42.4 21.7 54 545-598 182-236 (243)
218 KOG1130 Predicted G-alpha GTPa 96.1 0.064 1.4E-06 52.8 10.8 128 472-599 197-340 (639)
219 PF12921 ATP13: Mitochondrial 96.1 0.097 2.1E-06 43.9 10.7 97 470-584 2-98 (126)
220 PF13525 YfiO: Outer membrane 95.8 0.86 1.9E-05 42.4 17.2 161 479-660 14-198 (203)
221 PF07079 DUF1347: Protein of u 95.8 2.5 5.5E-05 42.9 38.8 355 239-612 134-531 (549)
222 PF13424 TPR_12: Tetratricopep 95.7 0.017 3.6E-07 44.1 4.5 23 643-665 49-71 (78)
223 PF13424 TPR_12: Tetratricopep 95.6 0.018 4E-07 43.9 4.4 61 574-634 5-74 (78)
224 PRK11906 transcriptional regul 95.6 0.21 4.5E-06 51.1 12.5 158 504-664 252-431 (458)
225 PF03704 BTAD: Bacterial trans 95.5 0.15 3.2E-06 44.6 10.3 70 505-576 64-138 (146)
226 KOG1941 Acetylcholine receptor 95.5 0.28 6.2E-06 47.7 12.4 47 410-456 16-64 (518)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.087 1.9E-06 53.6 9.4 61 537-600 74-138 (453)
228 PF13525 YfiO: Outer membrane 95.4 1.3 2.8E-05 41.2 16.9 138 509-669 11-170 (203)
229 KOG0543 FKBP-type peptidyl-pro 95.3 0.2 4.3E-06 49.9 11.3 95 575-669 258-355 (397)
230 KOG2280 Vacuolar assembly/sort 95.3 5.4 0.00012 43.3 31.9 326 302-665 440-795 (829)
231 COG0457 NrfG FOG: TPR repeat [ 95.3 2.7 5.8E-05 39.7 27.4 191 474-668 63-264 (291)
232 KOG3941 Intermediate in Toll s 95.1 0.18 3.9E-06 47.3 9.6 111 489-600 53-185 (406)
233 KOG4555 TPR repeat-containing 95.1 0.21 4.5E-06 41.0 8.7 88 583-670 52-145 (175)
234 PF13281 DUF4071: Domain of un 95.1 4.2 9.2E-05 41.1 19.9 161 508-669 146-334 (374)
235 PF12921 ATP13: Mitochondrial 95.1 0.31 6.8E-06 40.9 10.3 78 539-616 3-98 (126)
236 PRK11906 transcriptional regul 95.1 1.3 2.8E-05 45.5 16.3 145 485-634 273-435 (458)
237 PF10300 DUF3808: Protein of u 95.0 1.5 3.3E-05 46.7 17.7 159 508-669 193-376 (468)
238 COG4785 NlpI Lipoprotein NlpI, 94.9 1.3 2.9E-05 40.0 14.0 185 480-671 75-268 (297)
239 KOG4234 TPR repeat-containing 94.9 0.19 4E-06 44.6 8.6 89 582-670 103-198 (271)
240 PF13512 TPR_18: Tetratricopep 94.8 0.73 1.6E-05 39.2 11.6 55 586-640 22-81 (142)
241 COG3898 Uncharacterized membra 94.5 5.9 0.00013 39.5 28.5 286 302-600 85-389 (531)
242 COG5107 RNA14 Pre-mRNA 3'-end 94.4 6.8 0.00015 39.8 29.2 132 503-638 397-534 (660)
243 COG3118 Thioredoxin domain-con 94.3 5.1 0.00011 38.5 17.1 140 513-654 144-286 (304)
244 PF10300 DUF3808: Protein of u 94.3 1.5 3.4E-05 46.6 15.6 116 483-600 246-373 (468)
245 COG0457 NrfG FOG: TPR repeat [ 94.3 4.9 0.00011 37.8 27.4 199 436-638 60-268 (291)
246 PF13512 TPR_18: Tetratricopep 94.0 1.8 3.9E-05 36.8 12.3 53 514-567 21-76 (142)
247 KOG2610 Uncharacterized conser 94.0 0.61 1.3E-05 45.0 10.4 159 515-676 115-283 (491)
248 PRK15331 chaperone protein Sic 93.9 0.55 1.2E-05 40.9 9.1 86 480-566 47-133 (165)
249 COG1729 Uncharacterized protei 93.8 0.74 1.6E-05 43.6 10.7 93 505-600 144-241 (262)
250 PF04184 ST7: ST7 protein; In 93.8 9.6 0.00021 39.6 20.8 58 507-565 263-322 (539)
251 smart00299 CLH Clathrin heavy 93.8 2.9 6.2E-05 36.1 13.9 41 240-281 14-54 (140)
252 PF02259 FAT: FAT domain; Int 93.7 9.3 0.0002 39.1 21.2 149 502-653 145-305 (352)
253 smart00299 CLH Clathrin heavy 93.7 4.2 9.1E-05 35.0 15.7 85 508-601 12-96 (140)
254 KOG2610 Uncharacterized conser 93.7 1.9 4.1E-05 41.8 13.1 160 481-643 114-286 (491)
255 PF00515 TPR_1: Tetratricopept 93.6 0.12 2.6E-06 31.6 3.6 32 607-638 2-33 (34)
256 KOG1585 Protein required for f 93.6 6.1 0.00013 36.7 16.2 86 577-663 153-250 (308)
257 PF07719 TPR_2: Tetratricopept 93.6 0.17 3.7E-06 30.8 4.3 32 608-639 3-34 (34)
258 PF04053 Coatomer_WDAD: Coatom 93.5 3.1 6.7E-05 43.7 15.9 157 308-495 270-427 (443)
259 PF04053 Coatomer_WDAD: Coatom 93.5 1.9 4.2E-05 45.2 14.3 155 480-665 271-427 (443)
260 PF09205 DUF1955: Domain of un 93.5 3.9 8.4E-05 34.0 14.6 68 502-571 85-152 (161)
261 COG1729 Uncharacterized protei 93.4 0.66 1.4E-05 43.9 9.5 98 540-638 144-247 (262)
262 COG4105 ComL DNA uptake lipopr 93.3 7.3 0.00016 36.8 17.6 72 503-575 35-108 (254)
263 PF14432 DYW_deaminase: DYW fa 92.9 0.095 2.1E-06 43.2 3.1 42 676-721 2-45 (116)
264 COG4105 ComL DNA uptake lipopr 92.9 8.5 0.00018 36.3 17.0 169 480-669 44-233 (254)
265 PRK11619 lytic murein transgly 92.9 18 0.0004 40.2 32.9 76 373-450 103-178 (644)
266 KOG1920 IkappaB kinase complex 92.9 22 0.00048 41.1 21.7 83 544-633 971-1053(1265)
267 KOG3941 Intermediate in Toll s 92.7 1.1 2.5E-05 42.2 9.9 100 387-486 52-174 (406)
268 PF02259 FAT: FAT domain; Int 92.5 6 0.00013 40.5 16.6 65 605-669 145-213 (352)
269 KOG1941 Acetylcholine receptor 92.3 5.4 0.00012 39.3 14.1 221 380-600 17-272 (518)
270 KOG4648 Uncharacterized conser 91.9 0.64 1.4E-05 45.0 7.4 91 545-638 104-197 (536)
271 PF09613 HrpB1_HrpK: Bacterial 91.8 5.8 0.00012 34.6 12.4 86 549-637 21-108 (160)
272 COG3629 DnrI DNA-binding trans 91.8 1.4 3.1E-05 42.5 9.7 77 471-547 154-236 (280)
273 COG3118 Thioredoxin domain-con 91.4 14 0.00031 35.7 18.6 140 445-588 144-286 (304)
274 KOG4555 TPR repeat-containing 91.3 4.5 9.8E-05 33.5 10.5 54 512-567 52-106 (175)
275 PF13428 TPR_14: Tetratricopep 91.3 0.54 1.2E-05 30.8 4.6 30 640-669 1-30 (44)
276 KOG1585 Protein required for f 91.1 12 0.00025 35.0 14.1 137 505-665 33-175 (308)
277 PF13170 DUF4003: Protein of u 90.7 12 0.00027 36.9 15.5 134 417-583 79-226 (297)
278 PF13176 TPR_7: Tetratricopept 90.6 0.52 1.1E-05 29.3 3.9 26 642-667 1-26 (36)
279 KOG2114 Vacuolar assembly/sort 90.4 33 0.00072 38.2 30.3 54 580-634 711-764 (933)
280 KOG1586 Protein required for f 90.4 5.7 0.00012 36.7 11.4 62 578-639 117-187 (288)
281 PF04184 ST7: ST7 protein; In 90.4 5.7 0.00012 41.2 12.8 57 612-668 265-323 (539)
282 PF09613 HrpB1_HrpK: Bacterial 89.9 3.6 7.8E-05 35.8 9.5 82 575-656 8-94 (160)
283 PF10602 RPN7: 26S proteasome 89.7 8.6 0.00019 34.7 12.4 95 504-600 37-139 (177)
284 KOG1920 IkappaB kinase complex 89.6 47 0.001 38.7 25.0 174 406-601 857-1053(1265)
285 PF13181 TPR_8: Tetratricopept 89.6 0.57 1.2E-05 28.4 3.4 31 608-638 3-33 (34)
286 KOG1550 Extracellular protein 89.3 38 0.00082 37.2 21.2 78 589-669 454-538 (552)
287 TIGR02561 HrpB1_HrpK type III 89.3 2.5 5.4E-05 36.1 7.9 70 586-655 22-93 (153)
288 PF04097 Nic96: Nup93/Nic96; 89.0 42 0.00092 37.3 20.3 86 580-666 420-531 (613)
289 PF13176 TPR_7: Tetratricopept 88.4 0.76 1.7E-05 28.5 3.4 28 608-635 1-28 (36)
290 PRK09687 putative lyase; Provi 88.1 28 0.00061 34.2 27.1 61 572-637 204-265 (280)
291 PF08631 SPO22: Meiosis protei 87.9 29 0.00063 34.1 25.0 17 649-665 255-271 (278)
292 KOG4570 Uncharacterized conser 87.7 6 0.00013 38.2 10.1 100 464-567 58-164 (418)
293 KOG4570 Uncharacterized conser 87.4 1.5 3.3E-05 42.0 6.1 103 57-161 56-165 (418)
294 PRK09687 putative lyase; Provi 87.3 31 0.00068 33.9 25.6 75 468-549 204-278 (280)
295 KOG1258 mRNA processing protei 87.3 45 0.00098 35.7 34.8 186 468-656 295-491 (577)
296 KOG2066 Vacuolar assembly/sort 87.1 54 0.0012 36.3 24.3 50 269-318 393-442 (846)
297 PF08631 SPO22: Meiosis protei 87.1 32 0.0007 33.8 27.2 18 616-633 256-273 (278)
298 PF00637 Clathrin: Region in C 86.5 0.2 4.2E-06 43.7 -0.2 85 136-225 12-97 (143)
299 PF13170 DUF4003: Protein of u 86.2 17 0.00038 35.9 13.1 60 417-476 160-223 (297)
300 PF00515 TPR_1: Tetratricopept 86.2 1.8 3.9E-05 26.2 4.2 27 505-531 3-29 (34)
301 PF04097 Nic96: Nup93/Nic96; 86.2 57 0.0012 36.3 18.6 21 584-604 515-535 (613)
302 PF10345 Cohesin_load: Cohesin 85.9 64 0.0014 36.0 32.8 159 201-360 62-251 (608)
303 COG3629 DnrI DNA-binding trans 85.9 3.5 7.6E-05 39.8 7.8 56 612-667 159-214 (280)
304 TIGR02561 HrpB1_HrpK type III 85.1 7.5 0.00016 33.3 8.4 94 539-635 8-106 (153)
305 COG1747 Uncharacterized N-term 84.9 55 0.0012 34.3 22.5 167 475-648 71-247 (711)
306 KOG1258 mRNA processing protei 84.8 60 0.0013 34.8 26.9 138 267-405 44-187 (577)
307 PF02284 COX5A: Cytochrome c o 84.8 11 0.00023 29.9 8.4 60 521-582 28-87 (108)
308 KOG2066 Vacuolar assembly/sort 84.8 70 0.0015 35.5 22.4 75 166-245 392-467 (846)
309 KOG2114 Vacuolar assembly/sort 84.7 73 0.0016 35.7 26.3 18 279-296 501-518 (933)
310 KOG4234 TPR repeat-containing 84.2 17 0.00037 32.8 10.5 98 549-648 106-210 (271)
311 PF10602 RPN7: 26S proteasome 84.2 9.1 0.0002 34.5 9.4 60 540-600 38-99 (177)
312 PF07721 TPR_4: Tetratricopept 83.8 1.5 3.3E-05 24.7 2.8 24 641-664 2-25 (26)
313 KOG4648 Uncharacterized conser 83.7 3.7 7.9E-05 40.0 6.7 80 509-599 103-183 (536)
314 TIGR02508 type_III_yscG type I 83.4 20 0.00044 28.2 9.2 59 479-542 48-106 (115)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 83.3 12 0.00025 29.3 8.0 63 518-582 22-84 (103)
316 PF07035 Mic1: Colon cancer-as 83.2 32 0.0007 30.5 14.4 47 372-418 92-138 (167)
317 KOG1464 COP9 signalosome, subu 83.0 32 0.0007 32.6 12.2 147 281-427 40-218 (440)
318 TIGR02508 type_III_yscG type I 82.7 22 0.00047 28.1 9.5 61 376-439 46-106 (115)
319 PF13431 TPR_17: Tetratricopep 82.4 1.6 3.5E-05 26.6 2.7 18 576-593 15-32 (34)
320 KOG4642 Chaperone-dependent E3 82.0 3.9 8.6E-05 37.8 6.0 48 618-665 56-103 (284)
321 PF07035 Mic1: Colon cancer-as 81.5 38 0.00082 30.1 13.1 133 319-463 14-148 (167)
322 PF07719 TPR_2: Tetratricopept 81.2 3.9 8.5E-05 24.5 4.2 26 506-531 4-29 (34)
323 COG3914 Spy Predicted O-linked 80.4 60 0.0013 34.7 14.4 38 684-721 259-299 (620)
324 PF11207 DUF2989: Protein of u 80.4 9.4 0.0002 34.7 7.7 75 585-660 118-198 (203)
325 PF14853 Fis1_TPR_C: Fis1 C-te 80.1 11 0.00024 25.8 6.4 27 643-669 4-30 (53)
326 COG1747 Uncharacterized N-term 80.0 83 0.0018 33.1 19.1 161 501-669 64-234 (711)
327 PRK15180 Vi polysaccharide bio 79.6 34 0.00073 35.3 12.0 120 515-638 301-423 (831)
328 KOG0276 Vesicle coat complex C 79.0 32 0.0007 36.7 11.9 149 482-665 598-746 (794)
329 COG4455 ImpE Protein of avirul 78.9 52 0.0011 30.4 11.7 122 506-639 4-138 (273)
330 PF13374 TPR_10: Tetratricopep 78.9 3.9 8.5E-05 26.0 3.9 29 641-669 3-31 (42)
331 PF00637 Clathrin: Region in C 78.4 1.5 3.3E-05 38.0 2.3 84 239-325 13-96 (143)
332 COG4649 Uncharacterized protei 78.3 48 0.001 29.3 14.2 89 479-567 103-196 (221)
333 COG2976 Uncharacterized protei 77.8 55 0.0012 29.7 14.8 112 521-637 70-190 (207)
334 PF13174 TPR_6: Tetratricopept 77.6 3 6.6E-05 24.8 2.9 28 642-669 2-29 (33)
335 COG3947 Response regulator con 77.5 72 0.0016 30.9 15.9 55 614-668 287-341 (361)
336 smart00028 TPR Tetratricopepti 77.5 4.7 0.0001 23.1 3.8 29 609-637 4-32 (34)
337 PF13181 TPR_8: Tetratricopept 77.4 5 0.00011 24.1 3.8 29 641-669 2-30 (34)
338 KOG0890 Protein kinase of the 77.1 2.2E+02 0.0048 36.4 33.2 106 538-647 1670-1796(2382)
339 PF13174 TPR_6: Tetratricopept 76.9 3.9 8.6E-05 24.3 3.2 27 612-638 6-32 (33)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 76.5 13 0.00028 29.1 6.3 48 112-159 23-70 (103)
341 PF13374 TPR_10: Tetratricopep 76.3 6.7 0.00015 24.8 4.5 26 505-530 4-29 (42)
342 KOG1550 Extracellular protein 76.1 1.2E+02 0.0026 33.3 16.5 150 515-672 261-429 (552)
343 PRK10941 hypothetical protein; 76.0 22 0.00048 34.5 9.5 61 609-669 184-244 (269)
344 PF14853 Fis1_TPR_C: Fis1 C-te 75.1 7 0.00015 26.8 4.2 33 612-644 7-39 (53)
345 PF09477 Type_III_YscG: Bacter 75.0 42 0.00091 26.9 9.0 87 348-438 20-106 (116)
346 KOG1308 Hsp70-interacting prot 74.3 2.4 5.3E-05 41.4 2.5 87 587-673 127-215 (377)
347 PF13929 mRNA_stabil: mRNA sta 73.1 68 0.0015 31.2 11.7 111 519-629 144-261 (292)
348 PF07721 TPR_4: Tetratricopept 72.9 6.6 0.00014 22.1 3.2 20 579-598 6-25 (26)
349 KOG1464 COP9 signalosome, subu 72.8 89 0.0019 29.8 17.7 244 382-631 40-328 (440)
350 COG4455 ImpE Protein of avirul 72.1 16 0.00035 33.5 6.9 63 578-640 5-69 (273)
351 PF13762 MNE1: Mitochondrial s 71.9 18 0.00038 31.1 6.8 89 57-145 29-129 (145)
352 PRK15180 Vi polysaccharide bio 71.7 21 0.00045 36.8 8.3 136 481-621 300-442 (831)
353 KOG0545 Aryl-hydrocarbon recep 71.4 63 0.0014 30.4 10.5 54 616-669 240-293 (329)
354 COG4649 Uncharacterized protei 71.4 74 0.0016 28.2 16.0 129 504-634 60-195 (221)
355 PRK11619 lytic murein transgly 70.9 1.8E+02 0.004 32.6 40.4 93 581-673 414-509 (644)
356 PF11207 DUF2989: Protein of u 70.8 42 0.00092 30.6 9.3 74 520-594 123-198 (203)
357 PF04910 Tcf25: Transcriptiona 70.6 1.3E+02 0.0029 30.8 15.5 56 510-565 110-166 (360)
358 PHA02875 ankyrin repeat protei 70.3 1.5E+02 0.0032 31.2 16.8 197 222-435 19-230 (413)
359 KOG0276 Vesicle coat complex C 70.0 1.2E+02 0.0027 32.6 13.5 102 480-601 647-748 (794)
360 KOG0376 Serine-threonine phosp 69.6 4 8.7E-05 42.0 2.9 96 545-643 11-109 (476)
361 PF06552 TOM20_plant: Plant sp 69.2 35 0.00076 30.5 8.2 60 520-584 52-123 (186)
362 PF02284 COX5A: Cytochrome c o 68.1 31 0.00067 27.4 6.7 47 601-647 40-86 (108)
363 PF13762 MNE1: Mitochondrial s 67.6 61 0.0013 27.9 9.2 52 196-247 77-129 (145)
364 KOG4279 Serine/threonine prote 67.4 99 0.0021 34.2 12.4 183 401-639 202-399 (1226)
365 TIGR03504 FimV_Cterm FimV C-te 65.1 14 0.00029 24.3 3.7 27 644-670 3-29 (44)
366 KOG0508 Ankyrin repeat protein 63.9 31 0.00068 35.5 7.7 38 422-459 165-204 (615)
367 KOG1498 26S proteasome regulat 63.7 1.8E+02 0.0038 29.7 17.2 121 578-698 135-270 (439)
368 PF14561 TPR_20: Tetratricopep 63.5 16 0.00034 28.6 4.6 48 608-655 24-73 (90)
369 PF09477 Type_III_YscG: Bacter 63.5 77 0.0017 25.5 9.1 58 479-541 49-106 (116)
370 KOG3364 Membrane protein invol 63.3 42 0.00092 28.3 7.1 70 571-640 29-105 (149)
371 KOG0890 Protein kinase of the 63.1 4.4E+02 0.0095 34.1 30.0 64 606-671 1670-1733(2382)
372 PF10579 Rapsyn_N: Rapsyn N-te 62.9 16 0.00034 27.4 4.1 46 617-662 17-65 (80)
373 KOG4507 Uncharacterized conser 62.7 21 0.00045 37.9 6.4 98 549-649 618-719 (886)
374 PRK13342 recombination factor 62.4 2.1E+02 0.0045 30.1 15.7 48 402-449 229-279 (413)
375 PHA02875 ankyrin repeat protei 61.5 2.1E+02 0.0046 29.9 17.0 19 77-95 11-29 (413)
376 COG3947 Response regulator con 61.0 1.7E+02 0.0036 28.6 12.8 57 507-564 283-339 (361)
377 PF06552 TOM20_plant: Plant sp 61.0 18 0.00039 32.2 4.9 46 622-667 51-100 (186)
378 PF10579 Rapsyn_N: Rapsyn N-te 60.5 25 0.00054 26.4 4.8 45 551-595 19-64 (80)
379 PF09670 Cas_Cas02710: CRISPR- 59.5 1.5E+02 0.0034 30.6 12.4 52 514-566 142-197 (379)
380 COG5159 RPN6 26S proteasome re 59.4 84 0.0018 30.3 9.2 53 509-561 9-68 (421)
381 PF09986 DUF2225: Uncharacteri 59.3 59 0.0013 30.4 8.4 58 613-670 125-195 (214)
382 PF07163 Pex26: Pex26 protein; 58.6 1.2E+02 0.0026 29.3 10.1 88 510-600 90-184 (309)
383 KOG4642 Chaperone-dependent E3 58.2 1.2E+02 0.0027 28.5 9.8 119 480-600 20-143 (284)
384 PRK12798 chemotaxis protein; R 57.9 2.3E+02 0.0051 29.3 22.2 153 483-637 125-288 (421)
385 KOG4077 Cytochrome c oxidase, 57.7 92 0.002 25.9 7.9 71 521-602 67-137 (149)
386 smart00386 HAT HAT (Half-A-TPR 57.0 17 0.00038 21.1 3.2 29 620-648 1-29 (33)
387 KOG0403 Neoplastic transformat 56.9 2.5E+02 0.0054 29.2 17.3 58 373-430 513-573 (645)
388 PF13929 mRNA_stabil: mRNA sta 56.7 2E+02 0.0043 28.1 14.5 54 366-419 199-257 (292)
389 KOG2396 HAT (Half-A-TPR) repea 56.6 2.7E+02 0.0058 29.5 30.9 78 95-174 104-182 (568)
390 PRK10941 hypothetical protein; 55.5 1.6E+02 0.0036 28.6 11.0 78 505-584 183-261 (269)
391 PF10366 Vps39_1: Vacuolar sor 55.3 92 0.002 25.3 7.9 27 402-428 41-67 (108)
392 KOG1586 Protein required for f 54.9 1.9E+02 0.0041 27.3 18.9 62 582-643 162-232 (288)
393 PRK13800 putative oxidoreducta 54.8 4.3E+02 0.0093 31.3 27.2 125 535-666 753-878 (897)
394 TIGR03504 FimV_Cterm FimV C-te 53.6 33 0.00072 22.5 4.1 24 406-429 5-28 (44)
395 COG2909 MalT ATP-dependent tra 52.6 4.1E+02 0.0089 30.5 25.9 219 381-600 427-685 (894)
396 COG2909 MalT ATP-dependent tra 51.6 4.3E+02 0.0092 30.4 25.0 220 411-631 426-684 (894)
397 COG4941 Predicted RNA polymera 51.3 2.6E+02 0.0057 27.9 11.5 129 500-641 261-400 (415)
398 KOG0551 Hsp90 co-chaperone CNS 51.1 66 0.0014 31.8 7.3 87 580-666 87-179 (390)
399 PF14863 Alkyl_sulf_dimr: Alky 50.5 62 0.0013 27.8 6.4 66 590-658 57-122 (141)
400 PF07575 Nucleopor_Nup85: Nup8 50.4 3.9E+02 0.0084 29.6 18.2 30 413-442 508-537 (566)
401 PF04190 DUF410: Protein of un 50.4 2.5E+02 0.0054 27.3 18.3 110 281-401 3-122 (260)
402 PF10366 Vps39_1: Vacuolar sor 49.3 90 0.0019 25.4 6.9 27 505-531 41-67 (108)
403 PF11846 DUF3366: Domain of un 49.2 57 0.0012 29.9 6.7 29 536-564 142-170 (193)
404 KOG3807 Predicted membrane pro 48.7 2.8E+02 0.0061 27.5 11.2 120 501-640 271-396 (556)
405 PF11846 DUF3366: Domain of un 48.2 66 0.0014 29.5 7.0 36 602-637 140-175 (193)
406 COG0790 FOG: TPR repeat, SEL1 47.4 2.9E+02 0.0063 27.2 19.3 48 621-671 206-268 (292)
407 PF11663 Toxin_YhaV: Toxin wit 47.2 27 0.00058 29.3 3.6 32 210-243 107-138 (140)
408 PF12862 Apc5: Anaphase-promot 47.2 64 0.0014 25.3 5.8 53 616-668 8-69 (94)
409 KOG0292 Vesicle coat complex C 47.0 2.8E+02 0.0061 31.6 11.9 130 479-634 652-781 (1202)
410 KOG0292 Vesicle coat complex C 46.4 25 0.00054 39.2 4.2 47 585-634 654-700 (1202)
411 PF04910 Tcf25: Transcriptiona 46.3 3.5E+02 0.0075 27.8 13.4 64 605-668 99-167 (360)
412 COG4976 Predicted methyltransf 45.9 75 0.0016 29.6 6.5 89 616-709 5-94 (287)
413 COG2976 Uncharacterized protei 45.8 2.4E+02 0.0052 25.8 15.1 53 478-532 134-188 (207)
414 PF14689 SPOB_a: Sensor_kinase 45.7 23 0.00051 25.3 2.7 23 543-565 28-50 (62)
415 COG5159 RPN6 26S proteasome re 45.1 3E+02 0.0065 26.7 15.3 32 407-438 10-41 (421)
416 PF11848 DUF3368: Domain of un 44.8 77 0.0017 21.2 4.9 34 208-241 12-45 (48)
417 PF07720 TPR_3: Tetratricopept 44.7 57 0.0012 20.2 4.0 29 610-638 5-35 (36)
418 PF07163 Pex26: Pex26 protein; 44.5 2.4E+02 0.0053 27.4 9.7 17 407-423 90-106 (309)
419 KOG4507 Uncharacterized conser 44.1 2E+02 0.0044 31.0 10.0 132 535-669 568-705 (886)
420 KOG2659 LisH motif-containing 44.0 2.1E+02 0.0046 26.8 9.1 96 501-599 24-128 (228)
421 KOG3824 Huntingtin interacting 43.5 69 0.0015 31.1 6.1 61 585-645 127-189 (472)
422 PF07575 Nucleopor_Nup85: Nup8 43.4 1.1E+02 0.0023 33.9 8.8 90 200-293 374-463 (566)
423 PF11768 DUF3312: Protein of u 42.7 4.7E+02 0.01 28.3 12.6 24 475-498 413-436 (545)
424 KOG2422 Uncharacterized conser 41.8 3E+02 0.0065 29.7 10.8 102 548-651 248-388 (665)
425 PF04034 DUF367: Domain of unk 41.0 2E+02 0.0042 24.1 7.6 56 576-631 68-124 (127)
426 cd08819 CARD_MDA5_2 Caspase ac 40.6 1.7E+02 0.0037 22.6 6.9 38 381-419 48-85 (88)
427 PF14689 SPOB_a: Sensor_kinase 40.3 67 0.0015 22.9 4.4 23 508-530 28-50 (62)
428 cd08819 CARD_MDA5_2 Caspase ac 40.1 1.7E+02 0.0037 22.6 6.6 38 280-318 48-85 (88)
429 KOG2063 Vacuolar assembly/sort 40.0 6.6E+02 0.014 29.3 18.5 160 167-345 464-637 (877)
430 KOG0889 Histone acetyltransfer 39.8 1.2E+03 0.025 32.1 21.7 19 276-294 2490-2508(3550)
431 PRK10564 maltose regulon perip 39.0 47 0.001 32.4 4.4 38 201-238 260-297 (303)
432 PHA03100 ankyrin repeat protei 38.9 5.2E+02 0.011 27.7 13.6 13 280-292 117-129 (480)
433 PF12968 DUF3856: Domain of Un 38.2 2.1E+02 0.0045 23.8 7.0 20 647-666 107-126 (144)
434 PF11848 DUF3368: Domain of un 38.1 1.2E+02 0.0027 20.2 5.2 32 514-545 13-44 (48)
435 COG4785 NlpI Lipoprotein NlpI, 38.0 3.4E+02 0.0074 25.3 14.6 159 469-637 98-268 (297)
436 PF11663 Toxin_YhaV: Toxin wit 37.7 33 0.00072 28.8 2.7 34 513-548 105-138 (140)
437 PRK10564 maltose regulon perip 37.6 63 0.0014 31.6 5.0 41 402-442 259-299 (303)
438 PHA03100 ankyrin repeat protei 37.3 5.4E+02 0.012 27.6 13.1 23 72-94 39-61 (480)
439 PF11838 ERAP1_C: ERAP1-like C 37.0 4.4E+02 0.0095 26.3 19.1 96 554-649 146-245 (324)
440 PF04090 RNA_pol_I_TF: RNA pol 36.7 1.7E+02 0.0036 26.9 7.3 102 608-709 43-145 (199)
441 PF08424 NRDE-2: NRDE-2, neces 36.7 4.6E+02 0.0099 26.4 17.4 132 501-636 17-184 (321)
442 COG4976 Predicted methyltransf 36.6 59 0.0013 30.3 4.3 55 585-639 6-62 (287)
443 PF12862 Apc5: Anaphase-promot 36.4 1.1E+02 0.0024 23.9 5.6 22 614-635 49-70 (94)
444 PF10345 Cohesin_load: Cohesin 36.3 6.6E+02 0.014 28.1 34.5 84 211-294 152-251 (608)
445 KOG3824 Huntingtin interacting 36.2 52 0.0011 31.9 4.1 54 549-605 127-182 (472)
446 PF14561 TPR_20: Tetratricopep 36.1 2.1E+02 0.0045 22.3 8.2 37 630-666 12-48 (90)
447 KOG4077 Cytochrome c oxidase, 35.3 1.7E+02 0.0038 24.4 6.3 47 600-646 78-124 (149)
448 PF04190 DUF410: Protein of un 35.3 4.3E+02 0.0092 25.6 19.1 28 468-495 88-115 (260)
449 KOG0376 Serine-threonine phosp 33.2 69 0.0015 33.4 4.8 104 510-618 11-117 (476)
450 PRK09169 hypothetical protein; 33.0 1.2E+03 0.027 30.4 44.0 436 231-666 160-692 (2316)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 32.5 3E+02 0.0065 23.1 9.0 42 521-562 81-123 (126)
452 PF11817 Foie-gras_1: Foie gra 31.3 1.7E+02 0.0037 28.1 7.1 19 306-324 17-35 (247)
453 PRK11639 zinc uptake transcrip 31.2 1.8E+02 0.0038 26.0 6.6 66 82-147 11-76 (169)
454 KOG2063 Vacuolar assembly/sort 30.3 9.4E+02 0.02 28.1 18.5 28 402-429 506-533 (877)
455 COG5108 RPO41 Mitochondrial DN 29.9 2.8E+02 0.0061 30.4 8.5 24 238-261 33-56 (1117)
456 PF11817 Foie-gras_1: Foie gra 29.6 2.4E+02 0.0052 27.1 7.8 56 508-563 183-243 (247)
457 KOG2581 26S proteasome regulat 29.4 6.6E+02 0.014 26.0 12.3 24 577-600 212-235 (493)
458 cd08326 CARD_CASP9 Caspase act 28.0 2.4E+02 0.0052 21.7 5.9 39 380-418 41-79 (84)
459 COG0735 Fur Fe2+/Zn2+ uptake r 27.9 2.8E+02 0.006 24.0 7.1 45 302-346 23-67 (145)
460 PF02847 MA3: MA3 domain; Int 27.7 1.9E+02 0.0042 23.4 6.0 21 406-426 8-28 (113)
461 KOG3364 Membrane protein invol 27.3 4E+02 0.0086 22.8 9.0 69 535-605 29-103 (149)
462 cd00280 TRFH Telomeric Repeat 27.0 3.6E+02 0.0078 24.4 7.4 68 554-621 85-158 (200)
463 PRK11639 zinc uptake transcrip 26.6 2.5E+02 0.0055 25.0 6.8 46 303-348 29-74 (169)
464 KOG2659 LisH motif-containing 26.5 5.5E+02 0.012 24.2 10.7 98 534-634 22-131 (228)
465 COG5191 Uncharacterized conser 26.4 1.5E+02 0.0033 29.1 5.4 74 573-646 106-182 (435)
466 KOG2758 Translation initiation 26.2 6.6E+02 0.014 25.0 15.3 164 457-634 22-195 (432)
467 KOG4279 Serine/threonine prote 26.1 3.5E+02 0.0076 30.3 8.5 146 505-666 203-370 (1226)
468 COG0735 Fur Fe2+/Zn2+ uptake r 26.0 2.3E+02 0.005 24.5 6.2 48 97-144 21-68 (145)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 25.9 4E+02 0.0086 22.4 9.2 58 539-599 66-124 (126)
470 PRK13800 putative oxidoreducta 25.9 1.2E+03 0.025 27.8 27.8 254 289-566 625-880 (897)
471 KOG0687 26S proteasome regulat 25.8 6.9E+02 0.015 25.0 12.9 94 539-634 105-209 (393)
472 COG5187 RPN7 26S proteasome re 25.6 4.9E+02 0.011 25.5 8.5 95 538-634 115-220 (412)
473 COG2912 Uncharacterized conser 25.6 1.9E+02 0.004 28.0 5.9 56 614-669 189-244 (269)
474 TIGR02710 CRISPR-associated pr 24.8 7.9E+02 0.017 25.4 11.9 54 510-563 137-196 (380)
475 PRK02287 hypothetical protein; 23.7 5.1E+02 0.011 23.2 7.8 55 577-631 110-165 (171)
476 PF06957 COPI_C: Coatomer (COP 23.7 5E+02 0.011 27.3 9.0 42 597-638 289-332 (422)
477 PRK14958 DNA polymerase III su 23.5 9.7E+02 0.021 26.0 11.7 87 428-537 193-279 (509)
478 PF10255 Paf67: RNA polymerase 23.5 3.3E+02 0.0071 28.4 7.6 56 372-427 125-191 (404)
479 PF10516 SHNi-TPR: SHNi-TPR; 23.0 2E+02 0.0043 18.2 3.8 28 641-668 2-29 (38)
480 smart00544 MA3 Domain in DAP-5 22.7 4.1E+02 0.009 21.4 8.6 22 406-427 8-29 (113)
481 PF11838 ERAP1_C: ERAP1-like C 22.6 7.7E+02 0.017 24.5 16.7 59 472-531 171-229 (324)
482 KOG4567 GTPase-activating prot 22.5 7.7E+02 0.017 24.5 9.7 94 523-623 263-366 (370)
483 PRK14700 recombination factor 22.4 7.7E+02 0.017 24.4 10.5 45 406-450 129-176 (300)
484 COG5108 RPO41 Mitochondrial DN 22.4 6.8E+02 0.015 27.7 9.6 47 339-385 33-81 (1117)
485 PF04781 DUF627: Protein of un 22.4 4.4E+02 0.0095 21.6 6.9 28 546-573 4-31 (111)
486 PRK13342 recombination factor 22.2 9.2E+02 0.02 25.3 18.8 46 506-551 230-278 (413)
487 COG0790 FOG: TPR repeat, SEL1 21.9 7.6E+02 0.016 24.2 19.2 79 518-600 128-217 (292)
488 TIGR02270 conserved hypothetic 21.5 9.5E+02 0.021 25.2 24.5 165 203-384 43-207 (410)
489 PF10475 DUF2450: Protein of u 21.4 4.3E+02 0.0094 26.1 8.0 52 375-428 104-155 (291)
490 PF14669 Asp_Glu_race_2: Putat 21.3 6.4E+02 0.014 23.1 13.5 96 390-495 97-206 (233)
491 PRK08691 DNA polymerase III su 21.1 1.2E+03 0.026 26.5 11.7 87 428-537 193-279 (709)
492 KOG1308 Hsp70-interacting prot 20.9 1.1E+02 0.0024 30.5 3.5 82 515-600 126-208 (377)
493 cd07153 Fur_like Ferric uptake 20.7 2.4E+02 0.0052 23.0 5.2 47 203-249 5-51 (116)
494 COG5187 RPN7 26S proteasome re 20.3 8.3E+02 0.018 24.0 11.9 26 470-495 115-140 (412)
495 PF13934 ELYS: Nuclear pore co 20.1 7.4E+02 0.016 23.4 13.2 118 506-630 79-197 (226)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.6e-110 Score=949.91 Aligned_cols=695 Identities=33% Similarity=0.596 Sum_probs=677.6
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcCCcch---HHHHHHHHHhhcCCCchhhHHHHHHHHHccCChhHHHHHHhcCCCC
Q 004856 18 FLRFPANQTRPHMTATHSFSLLNLCENPQHL---QQIHARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP 94 (727)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 94 (727)
|..|+..+..| +..+|..++++|.+.+.+ .++|..+ ++.|..++..++|+|+++|+++|+++.|+++|++|++|
T Consensus 74 ~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~ 150 (857)
T PLN03077 74 LESMQELRVPV--DEDAYVALFRLCEWKRAVEEGSRVCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER 150 (857)
T ss_pred HHHHHhcCCCC--ChhHHHHHHHHHhhCCCHHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC
Confidence 44455556666 356788999999888776 8899999 89999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHH
Q 004856 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174 (727)
Q Consensus 95 ~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 174 (727)
|+++||++|++|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.++|..+++.|+.||..++|+||+
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHH
Q 004856 175 FYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGR 253 (727)
Q Consensus 175 ~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 253 (727)
+|+++ |++++|.++ ++|+.+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus 231 ~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 231 MYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 99999 999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 004856 254 IVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD 333 (727)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 333 (727)
+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|.++||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH 413 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 413 (727)
..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
|+.++|+.+|++|.. ++.||..||+.+|.+|++.|.++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 494 DEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 494 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
+++ .||+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+
T Consensus 548 ~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 548 NSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred Hhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 998 68999999999999999999999999999999999999999999999999999999999999999977799999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++.+.+++++++|++...|..|+++|...
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~ 704 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHHcccccCc
Q 004856 654 GKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIMEGRRESS 721 (727)
Q Consensus 654 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~~~~~~~~ 721 (727)
|+|++|.++++.|+++|++|+||+|||++++.+|.|++||++||+..+||..|+.+ .+|+..||.+..
T Consensus 705 g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 999999997653
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-83 Score=712.32 Aligned_cols=526 Identities=33% Similarity=0.554 Sum_probs=516.3
Q ss_pred CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCC-CCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHh
Q 004856 194 FKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNT 272 (727)
Q Consensus 194 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 272 (727)
..++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34677899999999999999999999999999865 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHH
Q 004856 273 ALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352 (727)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 352 (727)
.|+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004856 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVE 432 (727)
Q Consensus 353 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 432 (727)
++++|..+.+.|+.+|..++++|+++|+++|++++|.++|+.|..+|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 512 (727)
||..||+.++.+|++.|.+++|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|. .||+.+||+||.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999877999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
|.+++++|+..|+..+|++|+.+|..+|+++.|+.+++++++++|++..+|..|+++|.+.|+|++|.++++.|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHHcccccCc
Q 004856 673 KTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIMEGRRESS 721 (727)
Q Consensus 673 ~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~~~~~~~~ 721 (727)
+.||++|+++++.+|.|++||++||+..+||..|..+ .+|++.||.+..
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999 999999997754
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-83 Score=729.36 Aligned_cols=576 Identities=25% Similarity=0.393 Sum_probs=557.9
Q ss_pred CCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHH
Q 004856 92 TSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171 (727)
Q Consensus 92 ~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (727)
..++..++|.+|++|++.|++++|+.+|++|.+.|+.|+..||..++++|.+.+.+..|.++|..+.+.+..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChh
Q 004856 172 LVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250 (727)
Q Consensus 172 li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 250 (727)
|+++|+++ |+++.|.++ ++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||++++++|+..++++
T Consensus 127 li~~~~~~--g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 127 MLSMFVRF--GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHhC--CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999 999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 004856 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330 (727)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (727)
.+.+++..+++.|+.||..++|+||.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|++|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 004856 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410 (727)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 410 (727)
.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||+||.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 570 (727)
++|++|. .+|+++||++|.+|++.|+.++|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+. |+
T Consensus 445 ~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~ 520 (857)
T PLN03077 445 EVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GI 520 (857)
T ss_pred HHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CC
Confidence 9999999 79999999999999999999999999999986 59999999999999999999999999999999988 99
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCcchHHHHHHH
Q 004856 571 EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME-PENAGNYVLLSNI 649 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 649 (727)
.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999999998 7899999999999999999999999999998743 2378899999999
Q ss_pred HHhcCChhHHHHHHHHHH-hCCCccCC
Q 004856 650 YAAAGKWNGVAKMRTFLR-DRGLKKTP 675 (727)
Q Consensus 650 ~~~~g~~~~a~~~~~~m~-~~~~~~~~ 675 (727)
|.+.|++++|.++|+.|. +.|+.++.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 999999999999999998 56876653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-71 Score=616.45 Aligned_cols=475 Identities=23% Similarity=0.399 Sum_probs=462.0
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHH
Q 004856 93 SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQS-MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDA 171 (727)
Q Consensus 93 ~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 171 (727)
.++.++||.+|.+|++.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4677899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChh
Q 004856 172 LVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLE 250 (727)
Q Consensus 172 li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 250 (727)
|+++|+++ |++++|.++ ++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+
T Consensus 164 Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999 999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 004856 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGF 330 (727)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 330 (727)
.+++++..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHH
Q 004856 331 RADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGY 410 (727)
Q Consensus 331 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 410 (727)
.||..||++++.+|++.|+++.|+++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCchHhHHHHHHHHHHhcCCHHHH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMA 489 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 489 (727)
+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 004856 490 GELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568 (727)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 568 (727)
.+++++++. .|+..+|++|+.+|+.+|+++.|..+++++.+ +.| +..+|+.+++.|++.|++++|.++++.|.++
T Consensus 482 ~~~~~~~~~-~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 482 YAMIRRAPF-KPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 999999875 79999999999999999999999999999976 567 4679999999999999999999999999988
Q ss_pred CCCCC
Q 004856 569 GYEPS 573 (727)
Q Consensus 569 ~~~p~ 573 (727)
|+++.
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87644
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-70 Score=608.51 Aligned_cols=523 Identities=15% Similarity=0.140 Sum_probs=479.3
Q ss_pred CCchhhHHHHHHHHHccCChhHHHHHHhcCCCCCcc-----hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH
Q 004856 62 HQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL-----LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF 136 (727)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-----~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 136 (727)
.++...|..+++.|+++|++++|+++|++|+.++.+ .++.++.+|.+.|.+++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 567888999999999999999999999999976554 456677889999999999999999975 99999999
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCC----CCCcccHHHHHHHHHhC
Q 004856 137 VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKF----KDLKSRWNSLISLAVQN 211 (727)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~----~~~~~~~~~li~~~~~~ 211 (727)
+|++|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++ |++++|.++ ++|. .||.++||+||.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999 999999999 8886 68999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHH--hcCCCChhHHhHHHHHhhcCCChHHHHH
Q 004856 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV--SDFCKDLSVNTALLSMYSKLASLEDAKM 289 (727)
Q Consensus 212 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~ 289 (727)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5789999999999999999999999999
Q ss_pred HHhcCCC----CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC
Q 004856 290 LFDKMSD----KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365 (727)
Q Consensus 290 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 365 (727)
+|++|.+ ++..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004856 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVK----TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441 (727)
Q Consensus 366 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 441 (727)
.||..+|++||.+|+++|++++|.++|++|. .||..+||.||.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 579999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHcC
Q 004856 442 LPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID----SKDIITWNSMISAYAKHG 517 (727)
Q Consensus 442 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g 517 (727)
+.+|++.|+++.|.+++..|.+.|+.|+..+|++++.++.+ ++++|..+.+.+... ..+...|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w----------- 827 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKW----------- 827 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccch-----------
Confidence 99999999999999999999999999999999999976432 345554443322210 2222333
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
.++|+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++||+++++. .++|..++
T Consensus 828 -~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~ 903 (1060)
T PLN03218 828 -TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLL 903 (1060)
T ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence 4569999999999999999999999998888889999999999888766 7888999999999998432 47899999
Q ss_pred HhC---CCCCCHh
Q 004856 598 KDM---PFKPDAR 607 (727)
Q Consensus 598 ~~~---~~~p~~~ 607 (727)
++| ++.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 999 6777664
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.1e-65 Score=567.39 Aligned_cols=505 Identities=16% Similarity=0.152 Sum_probs=407.6
Q ss_pred CCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcC-CCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHH
Q 004856 127 MYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGF-DSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSL 204 (727)
Q Consensus 127 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~l 204 (727)
..++...|..++..|++.|+++.|.++++.|.+.|+ +++..+++.++..|.+. |.+++|..+ ..|+.||..+||.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 445666788888888888888888888888888775 56667777788888887 888888888 88888888888888
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (727)
|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCC----CCeehHHHHHHHHHhcCCchHHHHHHHHHHH--cCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 004856 285 EDAKMLFDKMSD----KDRVVWNIMISAYYQSGFPKESLELLMCMVR--SGFRADLFTAIAAVSSISTMKNIEWGKQMHA 358 (727)
Q Consensus 285 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 358 (727)
++|.++|++|.+ ||..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888853 6788888888888888888888888888865 5678888888888888888888888888888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004856 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT----KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD 434 (727)
Q Consensus 359 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 434 (727)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 888888888888888888888888888888888888864 4777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCCCHHHHHHHHHH
Q 004856 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI--DSKDIITWNSMISA 512 (727)
Q Consensus 435 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~ 512 (727)
..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|++.|++++|.++|++|.. ..||..+|++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888887653 36888888888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhHHhcC
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----A-------------------GLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~ 569 (727)
|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+. |
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-G 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-C
Confidence 88888888888888888888888888888888765432 1 1235677778888777 8
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDMP---FKPDARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+.||..+|+.++.++++.+..+.+..+++.|+ ..|+..+|++++.++.+. .++|..++++|.+.+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 88888888888877777777777777777773 445667788888776332 356788888777643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-33 Score=328.34 Aligned_cols=582 Identities=13% Similarity=0.020 Sum_probs=398.2
Q ss_pred HHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChh
Q 004856 72 IDSYANLGLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFI 148 (727)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 148 (727)
...+...|+++.|...|+...+ .+...+..+...+.+.|++++|+..++++.... +.+...+..+...+...|+++
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 3444555666666666654432 233445556666666677777777666665432 223445566666666677777
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHH
Q 004856 149 SGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK---DLKSRWNSLISLAVQNGKSEKSFELFKLM 224 (727)
Q Consensus 149 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 224 (727)
.|...++.+.+.. +.+...+..+...|... |+.++|... ..... .+...+..++..+.+.|++++|+++++.+
T Consensus 381 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 381 KAAEYLAKATELD-PENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777776666543 23445555666666666 677666665 43322 22334555666777777777777777777
Q ss_pred HhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeeh
Q 004856 225 RMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVV 301 (727)
Q Consensus 225 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 301 (727)
... .+++..++..+...+...|+.++|.+.+..+++.. +.+...+..+...+...|++++|...|+++.+ .+..+
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 653 34455677777777777777777777777777654 33455566677777777777777777777643 25566
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 004856 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381 (727)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 381 (727)
+..+...+.+.|+.++|...|+++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+...|.+
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 7777777777777778877777776553 3345556667777777788888877777776543 4456677777777888
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHH
Q 004856 382 CEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLH 458 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 458 (727)
.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|++++|..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877776643 245667777777777888888888887777642 234566677777777788888888887
Q ss_pred HHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 004856 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL 538 (727)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (727)
+.+.+.. +.+...+..+...+.+.|++++|...|+.+....|+...+..++.++.+.|++++|.+.++++.+.. +.+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 7777665 4456666777777778888888888888765545666667777777888888888888888877643 3456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSAC 616 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 616 (727)
..+..+...|...|++++|..+|+++.+. .+++..++..+...+.+.|+ .+|+++++++ ...| +...+..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 67777777788888888888888887754 34456677777888888887 7788877776 3344 334566666667
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 788888888888888888888788888888888888888888888887764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.3e-32 Score=317.82 Aligned_cols=595 Identities=12% Similarity=0.045 Sum_probs=346.3
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCC------------
Q 004856 63 QNLILSSNLIDSYANLGLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSM------------ 127 (727)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~------------ 127 (727)
.+...+..+...+...|+++.|...|++... .+..+|..++..+...|++++|...++.+.+...
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV 270 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3444555555555555555555555554331 2334455555555555555555555554443211
Q ss_pred --------------------CCCcc-cHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhh
Q 004856 128 --------------------YPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENE 186 (727)
Q Consensus 128 --------------------~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~ 186 (727)
.|+.. .+..+...+...|+++.|...++.+++.. +.+...+..+...+.+. |++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~--g~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRL--GRVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC--CCHHH
Confidence 12211 12222233445666666666666666543 23445566666777777 78777
Q ss_pred hhhh-ccCC---CCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHh
Q 004856 187 KGMI-QRKF---KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS 262 (727)
Q Consensus 187 a~~~-~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 262 (727)
|... ..+. ..+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|...+..+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 7776 5443 2345567777778888888888888888776643 223344555555666666666666666666654
Q ss_pred cCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcC----------
Q 004856 263 DFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRSG---------- 329 (727)
Q Consensus 263 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------- 329 (727)
... .......++..|.+.|++++|..+++.+.. .+..+|+.+...+...|++++|.+.|+++.+..
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 505 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 421 122333344445555555555555554432 133445555555555555555555555544321
Q ss_pred -----------------------CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 004856 330 -----------------------FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386 (727)
Q Consensus 330 -----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 386 (727)
.+.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|+++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 11233334444444444455555555554444432 223334445555555555555
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004856 387 CARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463 (727)
Q Consensus 387 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 463 (727)
+|..+++.+.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555432 234456666666666666666666666665432 22334455555556666666666666666555
Q ss_pred hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.. +.+...+..++..+...|++++|..+++.+....| +...+..+...+...|++++|++.|+++... .|+..++.
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 43 33455556666666666666666666666543322 4455666666677777777777777777663 35556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHHcC
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFK-PDARVWGPLLSACKMHS 620 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 620 (727)
.+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ... ++...++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 6777777777777777777777653 3445667777777777788888888888776 223 35567777777777777
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+ ++|+..++++++..|+++..+..++.++...|++++|.++++++.+.+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7 778888888888888777777788888888888888888888877664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.2e-24 Score=249.42 Aligned_cols=588 Identities=12% Similarity=0.022 Sum_probs=433.9
Q ss_pred CCchhhHHHHHHHHHccCChhHHHHHHhcCCC--CCcchH-----------------HHHHHHHHcCCCchHHHHHHHHH
Q 004856 62 HQNLILSSNLIDSYANLGLLSLSQQVFNSITS--PNSLLY-----------------GTILKNLSKFGEYEKTLLVYKQM 122 (727)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~-----------------n~li~~~~~~g~~~~a~~~~~~m 122 (727)
+.|+.+...+...+.+.|+.++|.+.+++..+ |+...+ -.+.+.+.+.|++++|+..|++.
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44678888899999999999999999998764 443322 22344688899999999999998
Q ss_pred HhCCCCCCcc-cHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcc-
Q 004856 123 ALQSMYPAED-TYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKS- 199 (727)
Q Consensus 123 ~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~- 199 (727)
...+ +|+.. ............|+.+.|...++.+++.. +.+..++..+-..+... |+.++|... +++......
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~--g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS--GRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhCCCch
Confidence 8642 33322 11112222335689999999999999875 44567788888889888 999999988 665332111
Q ss_pred -----cH-----------------HHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHH
Q 004856 200 -----RW-----------------NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257 (727)
Q Consensus 200 -----~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 257 (727)
.| ...+..+-.......|...+..+......|+... ......+...|++++|...++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 11 1111112222223445555555443322333221 123445667899999999999
Q ss_pred HHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC--CCe---ehHHHH------------HHHHHhcCCchHHHH
Q 004856 258 VAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDR---VVWNIM------------ISAYYQSGFPKESLE 320 (727)
Q Consensus 258 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~ 320 (727)
.+++.. +.+..++..+...|.+.|++++|+..|++..+ |+. ..|..+ ...+.+.|++++|+.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999875 34678889999999999999999999998765 221 123222 345678999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT- 399 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 399 (727)
.|++..... +.+...+..+...+...|++++|++.++.+++.. +.+...+..+...|. .++.++|...++.+....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 999998763 2345566778888999999999999999999874 334556677777775 467899999998876432
Q ss_pred -----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 004856 400 -----------VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLN 467 (727)
Q Consensus 400 -----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 467 (727)
...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|++++|...++.+.+.. +
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 123555677888999999999999999885 454 4566778888999999999999999988754 3
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC--CHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK--DII---------TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
.+...+..+...+...|+.++|...++.+..... +.. .+..+...+...|+.++|+++++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 3444455555567889999999999998764222 111 123456678899999999999872 244
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHH
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLS 614 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 614 (727)
+...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++.+++. ...|+ ...+..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 6667788899999999999999999999964 2335778899999999999999999999987 34554 445666677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 615 ACKMHSETELAELTAEKLISMEPENA------GNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
++...|+.++|.++++++++..|+++ ..+..++.++...|++++|+..+++...
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999876544 3566779999999999999999998754
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=7.9e-24 Score=248.50 Aligned_cols=587 Identities=11% Similarity=0.036 Sum_probs=431.4
Q ss_pred HHHHHHHccCChhHHHHHHhcCC--CC-CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccH------------
Q 004856 70 NLIDSYANLGLLSLSQQVFNSIT--SP-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTY------------ 134 (727)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~~~--~~-~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~------------ 134 (727)
..++.+-..++.+.|.+.+++.. .| |...+..++..+.+.|+.++|...+++..+. .|+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCC
Confidence 34566778899999999999765 34 5667888899999999999999999999875 3544332
Q ss_pred -----HHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC---CCcccHHHHH
Q 004856 135 -----PFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK---DLKSRWNSLI 205 (727)
Q Consensus 135 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~---~~~~~~~~li 205 (727)
....+.+...|++++|.+.++.+++...+........+....... |+.++|... +++.. .+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~--g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLP--AQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCC--ccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 223446778999999999999998764322221111111222234 888999888 66543 3445678888
Q ss_pred HHHHhCCCchhHHHHHHHHHhCCCC----------------CChh---hHHHHHHHhcccCChhHHHHHHHHHHHhcCCC
Q 004856 206 SLAVQNGKSEKSFELFKLMRMEGAE----------------FDSG---TLINLLRSTVELKSLELGRIVHCVAVVSDFCK 266 (727)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 266 (727)
..+...|+.++|++.|+++.+.... ++.. .+...+..+-.....+.+...+....+....|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 8999999999999999998653210 0000 11111222222223445555555544433333
Q ss_pred ChhHHhHHHHHhhcCCChHHHHHHHhcCCC--C-CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhHH----
Q 004856 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSD--K-DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD-LFTAI---- 338 (727)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~---- 338 (727)
+.. .......+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+...... ...+.
T Consensus 269 ~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 322 12345667789999999999998755 3 677899999999999999999999999887543221 11111
Q ss_pred --------HHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHH
Q 004856 339 --------AAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMI 407 (727)
Q Consensus 339 --------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 407 (727)
.....+.+.|++++|...++.+++.. +.+...+..+...|...|++++|++.|++..+. +...+..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12345678999999999999999875 345667788999999999999999999987743 455677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 408 KGYVTHDQSLEALRLFSEMKLEGVE--------VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
..|. .++.++|+.+++.+...... .....+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7774 46789999998876543110 011234455667888999999999999998875 4456677889999
Q ss_pred HHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH---------HHHHHHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI---------TFLGLLTACV 549 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~ 549 (727)
|.+.|++++|...|+++....| +...+..+...+...++.++|+..++++......++.. .+..+...+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999654445 55556666666778999999999998875433233221 1334567788
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHH
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
..|+.++|..+++. .+++...+..+...+.+.|++++|++.+++. ...| +...+..+...+...|+.++|+.
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999998871 2455667788999999999999999999988 4556 46688888899999999999999
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999999999999999987654
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.8e-24 Score=210.53 Aligned_cols=506 Identities=14% Similarity=0.137 Sum_probs=385.7
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC
Q 004856 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282 (727)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (727)
.+..-.-+.|++.+|++--...-+++ ..+......+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 33444556677777776554443332 1111222222222333444444333333333322 233567778888888889
Q ss_pred ChHHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH-hhcCCChHHHHHHHH
Q 004856 283 SLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS-ISTMKNIEWGKQMHA 358 (727)
Q Consensus 283 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~ 358 (727)
++++|..+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. ....|++++|..-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999988887653 567888899999999999999999988876 46776655443333 345788899998888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 004856 359 NVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD- 434 (727)
Q Consensus 359 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 434 (727)
+.++... .=..+|+.|...+...|++..|+..|++..+-|+ ..|-.|...|...+.+++|+..|.+.... +|+
T Consensus 209 kAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 209 KAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 8877642 2345688899999999999999999999886554 57888999999999999999999888764 566
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHH
Q 004856 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAY 513 (727)
Q Consensus 435 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~ 513 (727)
.+.+..+...|-..|.++.|..-+++.++.. +.-...|+.|..++...|++.+|+..+.+.....|+ ..+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4567777778889999999999999988865 445678999999999999999999999986544554 56889999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 591 (727)
...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.. .++|+ ...|+.+...|-..|+..
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999988 6786 6689999999999999999999999988 57898 568999999999999999
Q ss_pred HHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH----
Q 004856 592 EARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF---- 665 (727)
Q Consensus 592 ~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~---- 665 (727)
.|.+.+.++ .+.|... ..+.|...+...|+..+|++.|+.+++++|+.+.+|..++.++--..+|.+-.+.+++
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999988 6778654 6777777899999999999999999999999999999999887777777663333222
Q ss_pred HHhCC----Cc------------------------------------cCCceeEEEE----CCEEEEEEeCC-CCCcChH
Q 004856 666 LRDRG----LK------------------------------------KTPGCSWIEI----GKLVHEFWAAD-QSHPQAD 700 (727)
Q Consensus 666 m~~~~----~~------------------------------------~~~~~~~~~~----~~~~~~f~~~d-~~hp~~~ 700 (727)
.++.+ ++ +.|-.+|-.+ +..++|++|.| .+||.+.
T Consensus 520 vrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Sh 599 (966)
T KOG4626|consen 520 VRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSH 599 (966)
T ss_pred HHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHH
Confidence 22221 11 2233344433 33489999999 9999999
Q ss_pred HHHHHHHHH--HHHHHcccccCc
Q 004856 701 AIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 701 ~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
.+......+ ++++..||+-+.
T Consensus 600 lmqsv~gmHdr~kveVfcYals~ 622 (966)
T KOG4626|consen 600 LMQSVPGMHDRSKVEVFCYALSV 622 (966)
T ss_pred HhccCcCcCCccceEEEEEEeec
Confidence 999999888 888888886554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.2e-20 Score=211.25 Aligned_cols=563 Identities=8% Similarity=-0.004 Sum_probs=350.9
Q ss_pred ccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHH
Q 004856 77 NLGLLSLSQQVFNSITS--P-NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKI 153 (727)
Q Consensus 77 ~~g~~~~A~~~f~~~~~--~-~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 153 (727)
..|++++|...|+...+ | +..++..+.+.|.+.|++++|+..+++..+. .|+...|..++..+ ++.+.|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999997763 4 4567889999999999999999999998874 46555555555333 888899999
Q ss_pred HHHHHHHcCCCchhHHHHHHHh--------hhccCCCChhhhhhhccCCCC--CcccHHHH-HHHHHhCCCchhHHHHHH
Q 004856 154 HAQVVKLGFDSFDDVGDALVEF--------YIKCDGGFENEKGMIQRKFKD--LKSRWNSL-ISLAVQNGKSEKSFELFK 222 (727)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~li~~--------y~~~~~g~~~~a~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~ 222 (727)
++.+.+.... +..+...+... |.+. +...++.. .+...+ +....... ...|.+.|++++|++++.
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~--eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL--PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH--HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999988643 33444444443 7665 55555555 333333 33333444 889999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHhcc-cCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC-----
Q 004856 223 LMRMEGAEFDSGTLINLLRSTVE-LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD----- 296 (727)
Q Consensus 223 ~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 296 (727)
++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..++.++..+...|.+.|+.++|.+++++++.
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999863 334445556566666 355 666666443 3346888999999999999999999999999864
Q ss_pred CCeehHHH------------------------------HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 004856 297 KDRVVWNI------------------------------MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346 (727)
Q Consensus 297 ~~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 346 (727)
++..+|-- ++..+.+.++++-+.++. ...|.......-..+...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccc
Confidence 22222211 133344445554333331 133433322111112222
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHhcCC---hH
Q 004856 347 MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT-K-----TVVSWSSMIKGYVTHDQ---SL 417 (727)
Q Consensus 347 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 417 (727)
.+...++.+.+..+.+.. +-+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 344555555555555442 11222222233334567777777777776554 1 12233455666665554 33
Q ss_pred HHHHH----------------------HHHHHH-CCCCC---CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHh
Q 004856 418 EALRL----------------------FSEMKL-EGVEV---DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSS 471 (727)
Q Consensus 418 ~A~~~----------------------~~~m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 471 (727)
+++.+ +..... .+..| +...+..+..++.. +..++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 33333 111111 01112 33444444444444 67777777665555443 3333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHh
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVN 550 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 550 (727)
....+...+...|++++|...|+++....|+...+..+...+.+.|+.++|...+++..+.. |+ ...+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHh
Confidence 33334444567788888888887755444555556666677777788888888887777643 43 3333333344445
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELT 628 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~ 628 (727)
.|++++|...+++..+ +.|+...+..+..++.+.|+.++|+..+++. ...|+.. .++.+..++...|+.++|+..
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888877774 3566667777777788888888888877776 4556443 455555567777888888888
Q ss_pred HHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 629 AEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 629 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++++++++|+++.++..++.++...|++++|+..+++..+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888877778888888888888888888877776554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.5e-18 Score=194.45 Aligned_cols=581 Identities=10% Similarity=-0.003 Sum_probs=381.7
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHH
Q 004856 63 QNLILSSNLIDSYANLGLLSLSQQVFNSITS--PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED-TYPFVIR 139 (727)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~ 139 (727)
.+..++..|...|.+.|+.++|+..+++..+ |+-.-|..++..+ +++.+|..+|+++... .|+.. ++..+..
T Consensus 76 ~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~ 150 (987)
T PRK09782 76 DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCR 150 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 3477888899999999999999999987764 5444444444333 7888888888888764 33333 2222222
Q ss_pred Hh-----hccCChhHHHHHHHHHHHHcCCCchhHHHH-HHHhhhccCCCChhhhhhh-ccCCCCCcc---cHHHHHHHHH
Q 004856 140 SC-----SCLLDFISGEKIHAQVVKLGFDSFDDVGDA-LVEFYIKCDGGFENEKGMI-QRKFKDLKS---RWNSLISLAV 209 (727)
Q Consensus 140 ~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~y~~~~~g~~~~a~~~-~~~~~~~~~---~~~~li~~~~ 209 (727)
.. .+....+.+.+.++ .......|+..+..- +...|.+. |++++|... .++.+.++. -+..+-..|.
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l--~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYL--KQWSQADTLYNEARQQNTLSAAERRQWFDVLL 227 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH--hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 20 11122244444444 222222223333333 35666666 666666555 444332221 1333444555
Q ss_pred hC-CCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCC-CC--------------------
Q 004856 210 QN-GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFC-KD-------------------- 267 (727)
Q Consensus 210 ~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~-------------------- 267 (727)
+. ++ +++..+++. .++-|......+...+.+.|+.++|.+++..+...... |+
T Consensus 228 q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 228 AGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 42 44 555555332 22245555555666666666666666555543322110 10
Q ss_pred ----------hhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHH--HhcCCchHHHHHHHHHHHcCCCCChh
Q 004856 268 ----------LSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAY--YQSGFPKESLELLMCMVRSGFRADLF 335 (727)
Q Consensus 268 ----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (727)
....-.++..+.+.++++.++++.. ....+. . ..+... ...+...++...+..|.+.. +-+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~ 377 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLT 377 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHH
Confidence 1112233677778888887777744 222222 1 233222 23466677777777776651 11333
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCC---HHHHHHH-------------------
Q 004856 336 TAIAAVSSISTMKNIEWGKQMHANVLRN-G-SDYQVSVHNSLIDMYCECED---LNCARKI------------------- 391 (727)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~------------------- 391 (727)
..--+---..+.|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 3333333456788899999999888763 1 22345556678888887766 3333222
Q ss_pred ------HhcCCC---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 392 ------FDSVKT---K--TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 392 ------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
+..... . +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...++.
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111111 1 45677778777776 8999999988888765 47766555555666789999999999998
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI-ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
+... +|+...+..+...+.+.|+.++|...+++.....|+. ..+..+...+...|++++|+..+++..+ +.|+..
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~ 610 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSAN 610 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHH
Confidence 7654 3334445666778899999999999999866444543 3333344445566999999999999998 568888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSAC 616 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 616 (727)
.+..+..++.+.|++++|+..+++.... .|+ ...+..+...+...|++++|++.+++. ...| +...+..+..++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999854 554 668889999999999999999999988 5566 456788888889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
...|++++|+..++++++++|++..+....+++.....+++.|.+-+++.....+
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999988877655544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-20 Score=186.13 Aligned_cols=420 Identities=12% Similarity=0.121 Sum_probs=339.5
Q ss_pred HHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCC
Q 004856 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 238 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 314 (727)
.+..-.-+.|++++|++-...+-..+ +.+....-.+-..+....+.+....--....+ .-..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888887665554433 22222222333455555555544332222222 245689999999999999
Q ss_pred chHHHHHHHHHHHcCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 004856 315 PKESLELLMCMVRSGFRAD-LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKIF 392 (727)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 392 (727)
.++|+.+++.|.+. +|+ ...|..+..++...|+.+.|.+.+...++.. |+.. +.+-+.......|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999875 564 5678889999999999999999999888763 4433 3445566667789999999998
Q ss_pred hcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc
Q 004856 393 DSVKTKT---VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNS 468 (727)
Q Consensus 393 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 468 (727)
.+..+.+ .+.|+.|...+..+|+...|+..|++.... .|+ ...|..+...+...+.++.|...+....... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 8766543 378999999999999999999999998864 566 4578888899999999999998887777654 44
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLT 546 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 546 (727)
...++..+...|...|.++-|...+++.....|+ ...|+.|..++...|++.+|...|++.+. +.|+ ....+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 5677778888899999999999999997666776 57999999999999999999999999998 5676 668899999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETE 623 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~ 623 (727)
.+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+.. .++.+...|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999884 4566 557899999999999999999999988 8889764 7888888899999999
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.|.+.+.+++..+|.-++++..|+.+|...|+..+|+.-++...+..
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999876653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.1e-17 Score=184.84 Aligned_cols=420 Identities=13% Similarity=0.035 Sum_probs=258.1
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhc
Q 004856 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSK 280 (727)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 280 (727)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44455667778888888888888765 45666677777777777777777777777776654 2234455556666666
Q ss_pred CCChHHHHHHHhcCCCCC---eehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 004856 281 LASLEDAKMLFDKMSDKD---RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (727)
.|++++|...|......+ ......++.-+.. ..+........+. .|
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~------------------------- 255 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KP------------------------- 255 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CC-------------------------
Confidence 666666665554332111 0000111110000 1111111111111 11
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-
Q 004856 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSWSSMIKG---YVTHDQSLEALRLFSEMKLEG- 430 (727)
Q Consensus 358 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g- 430 (727)
.+...+..+.. |...........-++...+.+. ..+..+... ....+++++|++.|++..+.+
T Consensus 256 ---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 256 ---------ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred ---------CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 11111111111 1111111111111111111000 111111111 122356777777777777654
Q ss_pred CCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHH
Q 004856 431 VEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNS 508 (727)
Q Consensus 431 ~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 508 (727)
..|+ ...+..+...+...|++++|...++..++.. +.....+..+...+...|++++|...|++.....| +...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2333 3345555566667777777777777776653 23355666777778888888888888887544344 5678888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
+...+...|++++|+..|++.++. .| +...+..+..++.+.|++++|+..++...+. .+.+...+..+...+...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc
Confidence 888899999999999999998884 45 4667778888888999999999999988854 333467888889999999
Q ss_pred CCHHHHHHHHHhC-CCCCCH-hh-------HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 588 GHMDEARELVKDM-PFKPDA-RV-------WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~~-~~-------~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
|++++|++.|++. ...|+. .. ++.....+...|++++|+.+++++++++|++..++..++.++...|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999886 444431 11 11112223446899999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhC
Q 004856 659 VAKMRTFLRDR 669 (727)
Q Consensus 659 a~~~~~~m~~~ 669 (727)
|.+++++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.6e-18 Score=181.81 Aligned_cols=293 Identities=13% Similarity=0.103 Sum_probs=215.9
Q ss_pred HHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCCh
Q 004856 378 MYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD---FVTIINILPACVNIGAL 451 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 451 (727)
.+...|++++|...|+++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566777777777666543 334566666777777777777777777766432221 13455666677777777
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCChHHHHHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD------IITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
+.|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+....|+ ...|..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776643 345667777778888888888888888876543332 12455677788889999999999
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004856 526 YTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM-P 601 (727)
Q Consensus 526 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 601 (727)
|+++.+. .| +...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999874 35 4567788888999999999999999998864 333 456788899999999999999999987 4
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCce
Q 004856 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA---AGKWNGVAKMRTFLRDRGLKKTPGC 677 (727)
Q Consensus 602 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~ 677 (727)
..|+...+..+...+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..++++|.+++++++|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 567777777778889999999999999999999988655 55555555443 5689999999999999888888874
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.1e-16 Score=176.12 Aligned_cols=352 Identities=13% Similarity=0.033 Sum_probs=275.9
Q ss_pred cCCChHHHHHHHhcCCCC------CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHH
Q 004856 280 KLASLEDAKMLFDKMSDK------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWG 353 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 353 (727)
+..+++.-.-+|..-++. +..-...++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 455666555556555442 33445567788889999999999999998764333 33444555666779999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004856 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430 (727)
Q Consensus 354 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 430 (727)
...++.+.+.. +.+...+..+...+...|++++|...|++... .+...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998874 44566788889999999999999999998764 256788889999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHH
Q 004856 431 VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSM 509 (727)
Q Consensus 431 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 509 (727)
..+. ..+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|...|++.....| +...+..+
T Consensus 175 P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3222 22222 344788899999999999887765444445556667788999999999999998655455 56788889
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 004856 510 ISAYAKHGDWSQ----CFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNL 583 (727)
Q Consensus 510 i~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 583 (727)
...|...|++++ |+..|++..+ +.| +...+..+...+...|++++|...+++.... .|+ ...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999986 8999999998 456 4678889999999999999999999999864 454 5577788999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHhhHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 584 LGRAGHMDEARELVKDM-PFKPDARVWGP-LLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
|.+.|++++|.+.++++ ...|+...+.. +..++...|+.++|+..++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999988 45676655444 44568999999999999999999999754
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=5.7e-18 Score=177.67 Aligned_cols=222 Identities=13% Similarity=0.122 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 004856 373 NSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF----VTIINILPAC 445 (727)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~ 445 (727)
..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+.. ..+..+...+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3344444444444444444444432 12334444444444444444444444444433221111 1122233334
Q ss_pred hcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCChHHHH
Q 004856 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD--IITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 523 (727)
...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++....|+ ...++.++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444444332 122333344444444455555555555443322222 123444444555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHhC
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR---AGHMDEARELVKDM 600 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 600 (727)
..++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++
T Consensus 270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 555554442 344333444444455555555555555544432 3444444444444332 23444444444444
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.3e-15 Score=159.64 Aligned_cols=576 Identities=14% Similarity=0.095 Sum_probs=402.2
Q ss_pred hhHHHHHHhcCCC--CCcchHHHHHHHH--HcCCCchHHHHHHHHHHhC--CCCCCcccHHHHHHHhhccCChhHHHHHH
Q 004856 81 LSLSQQVFNSITS--PNSLLYGTILKNL--SKFGEYEKTLLVYKQMALQ--SMYPAEDTYPFVIRSCSCLLDFISGEKIH 154 (727)
Q Consensus 81 ~~~A~~~f~~~~~--~~~~~~n~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 154 (727)
++.|...|..... |+-+. -.+.+|+ -..|++..|+.+|...... ..+||... .+-.++.+.++.+.|...+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 4777777776543 33221 1233333 3467999999999996553 44555532 2224456888999999888
Q ss_pred HHHHHHcCCCchhHHHHHHHhhh---cc-CCCChhhhhhh-cc---CCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHh
Q 004856 155 AQVVKLGFDSFDDVGDALVEFYI---KC-DGGFENEKGMI-QR---KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRM 226 (727)
Q Consensus 155 ~~~~~~~~~~~~~~~~~li~~y~---~~-~~g~~~~a~~~-~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 226 (727)
..+++... ...++++..+. .. +...+..+... .. ....|++..|.|-+-|...|++..++.+...+..
T Consensus 223 ~ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 88877643 22233332211 01 11233334443 22 2346788899999999999999999999999876
Q ss_pred CCCC--CChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC---Ceeh
Q 004856 227 EGAE--FDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK---DRVV 301 (727)
Q Consensus 227 ~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~ 301 (727)
.-.. .-..+|-.+.+++-..|+++.|...|-..++.....-+..+-.|..+|.+.|+++.+...|+++... +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 5311 1234688889999999999999999998887753333445567889999999999999999998653 4455
Q ss_pred HHHHHHHHHhcC----CchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH----HHhCCCCChhHHH
Q 004856 302 WNIMISAYYQSG----FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANV----LRNGSDYQVSVHN 373 (727)
Q Consensus 302 ~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~ 373 (727)
...|...|+..+ ..+.|..++.+..+.- .-|...|..+-..+- .+++.....++..+ ...+-.+...+.|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 566666666665 3455666655554432 234455555544444 34444446665544 4456667888899
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC-------Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKTK-------TV------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-TII 439 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 439 (727)
.+...+...|+++.|...|++.... |. .+--.+...+-..++++.|.+.|+.+... .|.-+ .|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999876532 22 12223455556678999999999999886 46543 455
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCCHHHHHHHHHHHH--
Q 004856 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKDIITWNSMISAYA-- 514 (727)
Q Consensus 440 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~-- 514 (727)
.++......+...+|...+..+.... ..++.+++.+...|.+...+..|.+-|..+... .+|..+.-+|.+.|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 55544445577888888888877754 455566666777888888888888866553321 356555555555443
Q ss_pred ----------HcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 004856 515 ----------KHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 515 ----------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 583 (727)
..+..++|+++|.+.+.. .| |...-+.+.-+++..|++.+|..+|....+. ..-...+|-.+..+
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHC 689 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHH
Confidence 234578899999999884 45 7888888999999999999999999999986 33456688899999
Q ss_pred HHhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH--------
Q 004856 584 LGRAGHMDEARELVKDM----PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA-------- 651 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-------- 651 (727)
|..+|++..|+++|+.. .-+.+..+.+.|..++...|.+.+|.+....+..+.|.++..-..++.+..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 99999999999999876 223467788889999999999999999999999999999887666654433
Q ss_pred -----------hcCChhHHHHHHHHHHhCCCc
Q 004856 652 -----------AAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 652 -----------~~g~~~~a~~~~~~m~~~~~~ 672 (727)
..+..++|.++|..+...+-+
T Consensus 770 ~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 770 LEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 335677888888888877543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.3e-15 Score=171.45 Aligned_cols=401 Identities=11% Similarity=0.005 Sum_probs=203.8
Q ss_pred ChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHH
Q 004856 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISA 308 (727)
Q Consensus 232 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 308 (727)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33334444555556666666666666665522 33444566666777777777777777777432 244556666677
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388 (727)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 388 (727)
+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++.+.+.. +.+..++..+...+...|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 77777777777777777665 3332225566666667777777777777777664 22444555667777777888888
Q ss_pred HHHHhcCCCCChh--------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHh
Q 004856 389 RKIFDSVKTKTVV--------SWSSMIKGYV-----THDQS---LEALRLFSEMKLE-GVEVDFV-TII----NILPACV 446 (727)
Q Consensus 389 ~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~ 446 (727)
.+.++.... ++. ....++.... ..+++ ++|++.++.+... ...|+.. .+. ..+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 877776665 211 1111222111 11223 5666667666643 1222221 111 0122333
Q ss_pred cCCChHHHHHHHHHHHHhCCC-chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCChH
Q 004856 447 NIGALEHVKYLHGYSMKLGLN-SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-----IITWNSMISAYAKHGDWS 520 (727)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~ 520 (727)
..|+.++|...++.+.+.+.+ |+. ....+..+|...|++++|+..|+++....|. ...+..+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 445555555555555554321 111 1111344455555555555555553322221 122333444455555555
Q ss_pred HHHHHHHHHHHCC-----------CCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 004856 521 QCFKLYTQMKQSD-----------VRPDL---ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586 (727)
Q Consensus 521 ~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 586 (727)
+|.+.++++.+.. -.|+. ..+..+...+...|++++|+..++++... .+.+...+..++..+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 5555555555421 01111 12233444445555555555555555432 22234444555555555
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 587 AGHMDEARELVKDM-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.|++++|++.+++. ...|+. ..+..+...+...|++++|+.+++++++..|+++
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 55555555555544 333432 2333333334455555555555555555555444
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2e-15 Score=169.81 Aligned_cols=393 Identities=9% Similarity=0.003 Sum_probs=297.4
Q ss_pred ChhHHhHHHHHhhcCCChHHHHHHHhcCCC-C--CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 004856 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSD-K--DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRAD-LFTAIAAVS 342 (727)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 342 (727)
+.....-.+......|+.++|+.++.+... . +...+..+...+.+.|++++|.++|++.... .|+ ......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 444445566677788999999999999864 2 4445899999999999999999999998875 343 555667778
Q ss_pred HhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHH
Q 004856 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 419 (727)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8889999999999999999873 44555 888899999999999999999988753 455667788888899999999
Q ss_pred HHHHHHHHHCCCCCCHH------HHHHHHHHHh-----cCCCh---HHHHHHHHHHHHh-CCCchHh-H-HHH---HHHH
Q 004856 420 LRLFSEMKLEGVEVDFV------TIINILPACV-----NIGAL---EHVKYLHGYSMKL-GLNSLSS-V-NTA---IFIS 479 (727)
Q Consensus 420 ~~~~~~m~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~ 479 (727)
++.+++... .|+.. ....++.... ..+.+ ++|...++.+.+. ...|+.. . ... .+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999987664 33320 1111222221 12233 6677777777754 2223221 1 111 1234
Q ss_pred HHhcCCHHHHHHHHHhccCCC---CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHh
Q 004856 480 YAKCGCIEMAGELFDEEKIDS---KD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-----LITFLGLLTACVN 550 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~ 550 (727)
+...|++++|...|+++.... |+ ...| +...|...|++++|+..|+++.+. .|. ......+..++..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHh
Confidence 457799999999999977543 32 2222 567899999999999999998864 332 2446667778899
Q ss_pred cCCHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYG----------YEPS---QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
.|++++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999986410 0123 234567788899999999999999998 4455 45678888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+...|+.++|++.++++++++|++...+..++..+...|++++|..+++.+.+..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999987753
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.6e-15 Score=166.78 Aligned_cols=329 Identities=9% Similarity=-0.041 Sum_probs=266.0
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHH
Q 004856 333 DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKG 409 (727)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 409 (727)
+......++..+.+.|+.+.|..++..++.....+.. ....++......|++++|...|+++... +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445666778888999999999999999888654433 4445556667799999999999998753 55678889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHH
Q 004856 410 YVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEM 488 (727)
Q Consensus 410 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 488 (727)
+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...+..+......+.. .+..+ ..+.+.|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHH
Confidence 99999999999999999875 455 556777888999999999999999888766543333 33333 34788999999
Q ss_pred HHHHHHhccCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH----HHHHHH
Q 004856 489 AGELFDEEKIDSK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE----GRIIFK 562 (727)
Q Consensus 489 A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~ 562 (727)
|...++.+....| +...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999998654322 33445556778899999999999999999853 2357778889999999999986 899999
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 563 EMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 563 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++.+. .|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|+..++++.+..|++
T Consensus 275 ~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99853 454 668999999999999999999999988 45665 4466667777999999999999999999999988
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...+..++.++...|++++|...+++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7777778889999999999999999876653
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.5e-14 Score=137.98 Aligned_cols=443 Identities=13% Similarity=0.104 Sum_probs=288.6
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc--cCChhHHH-HHHHHHHHHcCCCchhHHHHH
Q 004856 96 SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC--LLDFISGE-KIHAQVVKLGFDSFDDVGDAL 172 (727)
Q Consensus 96 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l 172 (727)
+++=|.|+. ...+|...++.-+|+.|+..|+..+...-..|++..+- ..++..++ +.+-.|.+.| +....+|..
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK~- 192 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWKS- 192 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccccc-
Confidence 446666665 46788999999999999999988777766666654442 22333222 1122222222 222233321
Q ss_pred HHhhhccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHH
Q 004856 173 VEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELG 252 (727)
Q Consensus 173 i~~y~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 252 (727)
|.+.+ -+.+...+...+|..||.|+|+-...++|.+++++-.+...+.+..+||.+|.+-+-. .+
T Consensus 193 ---------G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 193 ---------GAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ---------ccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 54444 2255556677889999999999999999999999999888899999999999876433 33
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 004856 253 RIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332 (727)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (727)
+++..+|+...+.||..++|+++...++.|+++.|.+ .|++++.+|++-|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCc
Confidence 7888999998889999999998888888888877653 3566777788888888
Q ss_pred ChhhHHHHHHHhhcCCChHH-HHHHHHHHHHh----CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----
Q 004856 333 DLFTAIAAVSSISTMKNIEW-GKQMHANVLRN----GSDY----QVSVHNSLIDMYCECEDLNCARKIFDSVKTK----- 398 (727)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 398 (727)
...+|..+|..+++.++..+ +..+..++... .+.| |...+...++.+.+..+.+.|.++-.-....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 88888888877777776643 33333333321 2222 3444566667777777777777665544322
Q ss_pred ------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhH
Q 004856 399 ------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSV 472 (727)
Q Consensus 399 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (727)
...-|..+....++....+.-+..|+.|.-.-+-|+..+...++.+....+.++-..+++..++..|.......
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 11235566677788888888899999998887889999999999999999999999999999888875444333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDII---TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
..-++..+++..- .|+.. -+.....-++. .-.+.....-.+|.+..+.| ...+.++-.+.
T Consensus 471 ~eeil~~L~~~k~--------------hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 471 REEILMLLARDKL--------------HPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWPA--TSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHhcCCC--------------CCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCCh--hHHHHHHHHHH
Confidence 3333333332210 22222 22222222111 11122223344555544443 34455556667
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhcCCHHHHHHHHHhC
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYA---SMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+.|..++|.+++..+.++..-.|.....+ -+++.-.+....-.|..+++-|
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888755533334444444 4445555667777787777766
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.6e-14 Score=148.33 Aligned_cols=413 Identities=13% Similarity=0.071 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCC------eehHHHHHHHHHhcCCchHHHHHHHH
Q 004856 251 LGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKD------RVVWNIMISAYYQSGFPKESLELLMC 324 (727)
Q Consensus 251 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~ 324 (727)
.|.+.+...-... ..++.+.+.|.+.|.-.|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444333332 3344555555555555555555555555443321 12344455555555555555555555
Q ss_pred HHHcCCCCChhh--HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CHHHHHHHHhcCCCC
Q 004856 325 MVRSGFRADLFT--AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE----DLNCARKIFDSVKTK 398 (727)
Q Consensus 325 m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~ 398 (727)
-.+. .||.++ +..+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+...+
T Consensus 333 s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 333 SLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 4432 233322 2234445555555555555555555442 233334444444444443 233444444333322
Q ss_pred -----------------------------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC
Q 004856 399 -----------------------------------------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE---GVEVD 434 (727)
Q Consensus 399 -----------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 434 (727)
.+...|.+...+...|.+.+|...|.+.... ...+|
T Consensus 410 ~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 2233444444445555555555555544432 11222
Q ss_pred HH-----H-HHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhcc-CCCCCHHHHH
Q 004856 435 FV-----T-IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK-IDSKDIITWN 507 (727)
Q Consensus 435 ~~-----t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 507 (727)
.. | --.+....-..++.+.|.+.+..+.+... .-+..|--+.-+-...+...+|...+.... ....+...|.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 21 1 11122222333455555555555544321 111111111111112234445555555522 2233444555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHh------------cCCHHHHHHHHHHhHHhcCCCCCh
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVN------------AGLVEEGRIIFKEMKESYGYEPSQ 574 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~ 574 (727)
-+...+.....+..|.+-|+.....- ..+|..+...|.+.|.. .+..++|+++|.++.+ ..+.|.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 45555666666666666555444321 12466666666665553 2456778888877775 345566
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCcchHHHHHHHH
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAELTAEKLISME--PENAGNYVLLSNIY 650 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 650 (727)
..-+.+.-.++..|++.+|..+|.+.. ......+|..+...|...|++-.|++.|+..++.. .+++.....|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 777778888888999999999998772 23345678888888999999999999999888732 34667788889999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 004856 651 AAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~~ 670 (727)
.+.|++.+|.+.........
T Consensus 727 y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 99999998888877665543
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=9.6e-15 Score=161.46 Aligned_cols=246 Identities=13% Similarity=0.018 Sum_probs=162.7
Q ss_pred CChHHHHHHHHHHHHhC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHH
Q 004856 348 KNIEWGKQMHANVLRNG-S-DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRL 422 (727)
Q Consensus 348 ~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 422 (727)
+++++|.+.++..++.+ . +.....++.+...+...|++++|...|+...+. +..+|..+...+...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555555443 1 122344556666666677777777777665432 234566666777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-
Q 004856 423 FSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK- 501 (727)
Q Consensus 423 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 501 (727)
|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|...|++.....|
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 77776542 2234566666667777777777777777776654 33455566677778888888888888887544344
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hH------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LI------TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
+...|+.+...+...|++++|++.|++..+. .|+ .. .++..+..+...|++++|.+++++.... .|+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---~p~ 540 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---DPE 540 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCC
Confidence 4677888888888888888888888888773 332 11 1222223334468888898888887743 454
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 574 -QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 574 -~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
...+..+...+.+.|++++|.++|++.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 446788888888899999998888877
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=5.1e-14 Score=155.16 Aligned_cols=428 Identities=10% Similarity=0.025 Sum_probs=275.7
Q ss_pred HHHhCCCchhHHHHHHHHHhCCCCCChh-hHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChH
Q 004856 207 LAVQNGKSEKSFELFKLMRMEGAEFDSG-TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE 285 (727)
Q Consensus 207 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 285 (727)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|..+++..+.. -.........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 457889999999999998875 45542 2227777778889999999999888811 1222233333456788889999
Q ss_pred HHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 004856 286 DAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362 (727)
Q Consensus 286 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (727)
+|..+|+++.+. |...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999988653 4556777788888899999999999988765 56655554444444445666568888888888
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHH----HHHHHHhcC---------C---hHHHHHHHHH
Q 004856 363 NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSS----MIKGYVTHD---------Q---SLEALRLFSE 425 (727)
Q Consensus 363 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~~g---------~---~~~A~~~~~~ 425 (727)
.. +.+...+..++....+.|-...|.++..+-+.- +...+.- -+.-..+.+ + .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 75 556777788888888889888888888775532 1111111 111111111 1 2345555555
Q ss_pred HHHC-CCCCCH-HHH----HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 426 MKLE-GVEVDF-VTI----INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 426 m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
+... +..|.. ..| .--+-++...++..++...++.+...+.+.-..+-.++.++|...++.++|..++.++...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5431 122322 122 2234466677777777777777777766555556677777777777777777777775321
Q ss_pred C-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--h-HHHHHHHHHHHhcCCHHHHH
Q 004856 500 S-------KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-----------RPD--L-ITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 500 ~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~t~~~ll~~~~~~g~~~~a~ 558 (727)
. ++......|.-+|...+++++|..+++++.+.-- .|| - ..+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1233345667777777777777777777776210 122 1 22344556667777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+.++++... -+-|......+.+.+...|++.+|++.++.. ...|+.. +......+....+++++|..+.+.+.+..
T Consensus 437 ~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 437 KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 777777643 3445667777777777777777777777655 3455433 44444555667777777777777777777
Q ss_pred CCCcch
Q 004856 637 PENAGN 642 (727)
Q Consensus 637 p~~~~~ 642 (727)
|+++.+
T Consensus 515 Pe~~~~ 520 (822)
T PRK14574 515 PEDIPS 520 (822)
T ss_pred CCchhH
Confidence 766643
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=8.7e-14 Score=153.34 Aligned_cols=418 Identities=10% Similarity=-0.012 Sum_probs=183.0
Q ss_pred cccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehH-HHH--HHHHHhcCCchHHHH
Q 004856 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVW-NIM--ISAYYQSGFPKESLE 320 (727)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~g~~~~A~~ 320 (727)
.+.|+++.|...+.++++..+.....++ .++..+...|+.++|+..+++...++...+ ..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555555554322212222 445555555555555555555554422222 222 224444555555555
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-- 398 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 398 (727)
+|+++.+... -+...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|.+.++++.+.
T Consensus 124 ly~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 5555554321 12233334444555555555555555555443 222333333333333334443455555555432
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH-----hcCCCh---HHHHHHHHHHHH
Q 004856 399 -TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV------TIINILPAC-----VNIGAL---EHVKYLHGYSMK 463 (727)
Q Consensus 399 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~ 463 (727)
+...+..+..+..+.|-...|+++..+-... ..+... .....+..- .....+ +.+..-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 2334444555555555555555444432211 011100 000011000 011122 222222222222
Q ss_pred -hCC-CchHhH-HH---HHHHHHHhcCCHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--
Q 004856 464 -LGL-NSLSSV-NT---AIFISYAKCGCIEMAGELFDEEKIDSK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-- 533 (727)
Q Consensus 464 -~~~-~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 533 (727)
.+- ++.... .. -.+-++.+.|++.++.+.|+.+..... ....-..+.++|...+++++|+.+|+++....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 111 111111 11 122344455555555555555543211 11233344555555555555555555554321
Q ss_pred ---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 534 ---VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG----------YEPS---QEHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 534 ---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
..++......|..++...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 011222234555555555555555555555554200 0122 123333445555555555555555
Q ss_pred HhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 598 KDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 598 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
+++ ...| |...+..+...+...|....|++.++.+..++|++..+....+.++...|+|++|..+.+.+
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555 2223 33444444455555555555555555555555555555555555555555555555554433
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.3e-14 Score=135.68 Aligned_cols=255 Identities=14% Similarity=0.121 Sum_probs=188.4
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHH
Q 004856 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVE 174 (727)
Q Consensus 95 ~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 174 (727)
+..+|.+||+|+|+-...+.|.++|++-+....+.+..+||.+|.+-+-. .++.+..+|+...+.||..+.|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 44577888888888888888888888888777788888888888765433 33677777777777777777666666
Q ss_pred hhhccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhH-HH
Q 004856 175 FYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLEL-GR 253 (727)
Q Consensus 175 ~y~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~ 253 (727)
..++. |.++.|+. .|++++.+|++.|+.|.-.+|..+|...++.++..+ +.
T Consensus 282 c~akf--g~F~~ar~--------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 282 CAAKF--GKFEDARK--------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHh--cchHHHHH--------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 66666 55554433 467888999999999999999999999988887754 44
Q ss_pred HHHHHHHHh--c--C----CCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC-----------CeehHHHHHHHHHhcCC
Q 004856 254 IVHCVAVVS--D--F----CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-----------DRVVWNIMISAYYQSGF 314 (727)
Q Consensus 254 ~~~~~~~~~--g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~ 314 (727)
.+...+... | + +.|...+..-++.|.+..+.+-|.++-.-.... ...-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 2 2 224455667777888888888888876655432 22346667788888999
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 004856 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE 381 (727)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 381 (727)
.+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..++..|...+....--++..+++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 9999999999998888899999999999999999999999999999988866555544444444443
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=7.7e-11 Score=118.92 Aligned_cols=494 Identities=12% Similarity=0.092 Sum_probs=313.7
Q ss_pred HHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-cc---CCCCCcccHHHHHHHHHhCCC
Q 004856 138 IRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QR---KFKDLKSRWNSLISLAVQNGK 213 (727)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~---~~~~~~~~~~~li~~~~~~g~ 213 (727)
-++.....+.+.|+-++...++.. +.....|.+|... ..++.|.++ .. ....+...|-+--..--.+|+
T Consensus 383 WKaAVelE~~~darilL~rAvecc-p~s~dLwlAlarL------etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVECC-PQSMDLWLALARL------ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHhc-cchHHHHHHHHHH------HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC
Confidence 344444555555666666665543 3334444444333 445555555 32 233455556555555556666
Q ss_pred chhHHHHHHH----HHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCC--hhHHhHHHHHhhcCCChHHH
Q 004856 214 SEKSFELFKL----MRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD--LSVNTALLSMYSKLASLEDA 287 (727)
Q Consensus 214 ~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A 287 (727)
.+...++..+ +...|+..+...|..=...|-..|.+-....+...++..|++.. ..+|+.-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 6665555543 33456666666666655566555655555555555555554322 23444444455555555555
Q ss_pred HHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCC
Q 004856 288 KMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367 (727)
Q Consensus 288 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 367 (727)
+.+|... ++. .+-+...|......--..|..+.-..+++.++... +-
T Consensus 536 rAVya~a-------------------------------lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pk 582 (913)
T KOG0495|consen 536 RAVYAHA-------------------------------LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PK 582 (913)
T ss_pred HHHHHHH-------------------------------Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-Cc
Confidence 5555443 332 11122233333333333444444444444444432 22
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 444 (727)
....|-....-+...|++..|+.++...-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANL 660 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHH
Confidence 2333444444555566666666666554432 3345666666666677777777777766553 4555555444444
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 523 (727)
--..++.++|.++++..++. ++.-...|-.+.+.+-+.++++.|.+.|..=....| .+..|-.+...--+.|+..+|.
T Consensus 661 er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 44566777777777666654 234455677777888888999999998887333345 5568888888888889999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
.++++.+-++ +-|...|...|+.-.+.|..+.|..+..+..++ ++.+...|..-|.+..+.++-..+.+.+.+...
T Consensus 740 ~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~- 815 (913)
T KOG0495|consen 740 SILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH- 815 (913)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC-
Confidence 9999988764 347888999999999999999999999998875 566677888888888888888888888888754
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEE
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIE 681 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 681 (727)
|+....++...+....+++.|...|.++++.+|++..++..+..-+...|.-++-.+++.+.... .++-|..|+.
T Consensus 816 -dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 816 -DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 44455555566777888999999999999999999999999999999999998888888876554 2445556653
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6.5e-14 Score=134.40 Aligned_cols=491 Identities=11% Similarity=0.047 Sum_probs=307.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCC
Q 004856 103 LKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPF-VIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDG 181 (727)
Q Consensus 103 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~ 181 (727)
.+-|.-+..+.+|+..|+-..+....|+...+-. +-..+.+...+..|...++..+..-...+..+.-.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik---------- 277 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK---------- 277 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH----------
Confidence 3456667778889999988888777777654322 22334455566666666665554322111111111
Q ss_pred CChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHH
Q 004856 182 GFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVV 261 (727)
Q Consensus 182 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 261 (727)
..|.+--.|.+.|.++.|+..|+...+. .|+-.+-..++-++...|+.+..++.|..++.
T Consensus 278 ------------------il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 278 ------------------ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred ------------------HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 1222333467889999999999988774 58888777777777778888999999988887
Q ss_pred hcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHH-----HHHHHHHhcC--CchHHHHHHHHHHHcCCCCCh
Q 004856 262 SDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWN-----IMISAYYQSG--FPKESLELLMCMVRSGFRADL 334 (727)
Q Consensus 262 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~ 334 (727)
....+|..- |.+..+ .|+....| -++.-+-+.. +.++++-.-.++..--+.||-
T Consensus 338 ip~~~dddk-------yi~~~d------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 338 IPGEIDDDK-------YIKEKD------------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred CCCCCCccc-------ccCCcC------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 654444321 111111 01111111 1111111111 112222222222222222321
Q ss_pred hh-HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHH----HHH-HH
Q 004856 335 FT-AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSW----SSM-IK 408 (727)
Q Consensus 335 ~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~l-i~ 408 (727)
.. +...+..+......+.|.. .--.-..-|.+.|+++.|.+++.-...+|..+- |.| ..
T Consensus 399 a~g~dwcle~lk~s~~~~la~d---------------lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAID---------------LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhh---------------hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 11 1111111111111111111 111122346788888888888777666543222 222 22
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHH
Q 004856 409 GYVTH-DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 409 ~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (727)
-|.+- .++..|.+.-+...... +-+....+.--+.....|++++|...+.+.....-......||.= -.+...|+++
T Consensus 464 ~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ld 541 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLD 541 (840)
T ss_pred HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHH
Confidence 23332 35556665555444321 222223322233345678888888888888776655555555532 3467889999
Q ss_pred HHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 488 MAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 488 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+|++.|-++... ..++...-.+...|-...+..+|++++-+... +.| |+..+.-|...|-+.|+-..|.+.+-.--
T Consensus 542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 999999886543 34566666788889999999999999988776 455 68889999999999999999998876544
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
. -++-+.++..-|...|....-+++|+.+|++. -+.|+..-|..++.. +++.|+++.|..+|+......|.|....
T Consensus 620 r--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 620 R--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred c--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 2 45667889888999999999999999999998 478999999999988 5788999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 004856 644 VLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 644 ~~l~~~~~~~g~~~~a~~~~~ 664 (727)
..|..++...|.. ++.++-+
T Consensus 698 kflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 698 KFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHhccccch-hHHHHHH
Confidence 9999999888865 3444433
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.2e-10 Score=117.59 Aligned_cols=438 Identities=13% Similarity=0.111 Sum_probs=348.8
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC
Q 004856 217 SFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD 296 (727)
Q Consensus 217 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 296 (727)
=.+++++..+. .|+.+ .|-++.....+.+.|+.++..+++.- +.+.. |.-+|++...++.|.+++++..+
T Consensus 365 K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666553 35443 23345556667777888888888763 22333 44456667778999999988765
Q ss_pred ---CCeehHHHHHHHHHhcCCchHHHHHHHH----HHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC-
Q 004856 297 ---KDRVVWNIMISAYYQSGFPKESLELLMC----MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ- 368 (727)
Q Consensus 297 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 368 (727)
.+...|-+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-..|.+-.+..+...++..|+...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3777887777777788999888888765 56779999999999999999999999999999999999887654
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004856 369 -VSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444 (727)
Q Consensus 369 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 444 (727)
..+|..-.+.+.+.+.++-|+.+|....+- +...|...+..--..|..++...+|++....- +-....+......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHH
Confidence 457888888899999999999999877653 55778887777778899999999999998862 2334455555666
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFK 524 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 524 (727)
.-..|+...|+.+++.+.+.. +.+..++-+-+........++.|..+|.+.....|....|.--+....-.++.++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 677899999999999999876 4477888899999999999999999999988778888899888888888899999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 004856 525 LYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPF- 602 (727)
Q Consensus 525 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 602 (727)
++++.++ .-|+ ...|..+.+.+-+.++++.|...|..=.+ .++-.+..|-.|.+.=.+.|.+-+|..++++...
T Consensus 673 llEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999988 4576 56788889999999999999998876553 2333466888888888999999999999999842
Q ss_pred CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------------------------------CcchHHHHHHHHH
Q 004856 603 KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE------------------------------NAGNYVLLSNIYA 651 (727)
Q Consensus 603 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~ 651 (727)
.| +...|...+..-.+.|+.+.|..+..++++--|. |+.....++.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 34 6779999999999999999999999988875553 3556667788888
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 004856 652 AAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 652 ~~g~~~~a~~~~~~m~~~~ 670 (727)
...+++.|++.|.+..+.+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 9999999999998876654
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=1.6e-12 Score=135.16 Aligned_cols=603 Identities=11% Similarity=0.029 Sum_probs=309.6
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHccCChhHHHHHHhcCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCC
Q 004856 53 ARYIILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITSP----NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMY 128 (727)
Q Consensus 53 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~ 128 (727)
+.+ ...|+.||-++|.+||..||..|+++.|- +|..|.-+ +...++.++.+..+.++.+.+. .
T Consensus 14 a~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344 67788888899999999999999988888 77776532 2234555555555555544443 3
Q ss_pred CCcccHHHHHHHhhccCChhHHHHHHHHHHH-------HcC-----------------CCch----------hHHHHHHH
Q 004856 129 PAEDTYPFVIRSCSCLLDFISGEKIHAQVVK-------LGF-----------------DSFD----------DVGDALVE 174 (727)
Q Consensus 129 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~-----------------~~~~----------~~~~~li~ 174 (727)
|.+.||..|+++|+..||+..-..+-+.+.. .|. -||. ..|..+++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432111111110 010 0110 11222222
Q ss_pred hhhccC------------------CCChhhhhhh-ccCC-CCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChh
Q 004856 175 FYIKCD------------------GGFENEKGMI-QRKF-KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSG 234 (727)
Q Consensus 175 ~y~~~~------------------~g~~~~a~~~-~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 234 (727)
...++. ...+++-... .... .++..+|.+++.+-.-+|+.+.|..++.+|++.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 221110 0111111111 1111 3677778888888888888899999999998888888888
Q ss_pred hHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCC
Q 004856 235 TLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 235 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (727)
-|-.++-+ .++...+..+...|...|+.|+..++.--+-.+.++|....+....+.-.--....+..+..+...+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 77777765 777888888888888888888888887766666665543322221111000011122222222111111
Q ss_pred ch-----HHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhc----
Q 004856 315 PK-----ESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS---DYQVSVHNSLIDMYCEC---- 382 (727)
Q Consensus 315 ~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~---- 382 (727)
.+ -....+.+..-.|+.-....|..... ....|.-+..+++-..+..--. ..++..+..++.-|.+.
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 11 11111222222232222222221111 1123443444444333321110 11122222222222221
Q ss_pred ------------------CCHHHHHHHHhcCCC----------------CChhH-----------HHHHHHHHHhcCChH
Q 004856 383 ------------------EDLNCARKIFDSVKT----------------KTVVS-----------WSSMIKGYVTHDQSL 417 (727)
Q Consensus 383 ------------------g~~~~A~~~~~~~~~----------------~~~~~-----------~~~li~~~~~~g~~~ 417 (727)
.+..+..+....... +.... -+.++..++..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111112222211110 00011 123444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
+++..-+.....-+ | ..|..++.-|+....++.|..+.++.... .+..+..-+..+.+.+.+.+...++..++.+
T Consensus 477 K~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44433333322211 1 45778888888888888888887776543 3345666778888888899999999888888
Q ss_pred ccCC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC------------------------------CCChHHH
Q 004856 496 EKID---SKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDV------------------------------RPDLITF 541 (727)
Q Consensus 496 ~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------------------~p~~~t~ 541 (727)
+++. .|+ ..+.--+++..+..|+.+...++++-+...|+ +|.+...
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~ 633 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDL 633 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHH
Confidence 7643 232 22334455555666666666665555544332 2222222
Q ss_pred HHHHHH---------------------HHhcCCHHHHHHHHHHh--HHhcC---------CCC---------ChhHHHHH
Q 004856 542 LGLLTA---------------------CVNAGLVEEGRIIFKEM--KESYG---------YEP---------SQEHYASM 580 (727)
Q Consensus 542 ~~ll~~---------------------~~~~g~~~~a~~~~~~~--~~~~~---------~~p---------~~~~~~~l 580 (727)
..+.+. |.+.|++.++..+.+.= .-+.+ +.| +......|
T Consensus 634 e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRL 713 (1088)
T KOG4318|consen 634 EGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRL 713 (1088)
T ss_pred HHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHH
Confidence 222222 22222222222222100 00000 000 11122346
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHccCCC---CcchHHHHHHHHHhcC
Q 004856 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS---ETELAELTAEKLISMEPE---NAGNYVLLSNIYAAAG 654 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 654 (727)
+..|.+.|+++.|..++.+++..|+..+...|...+.++. ++.++....+++.++.|. +...|.-.+....+..
T Consensus 714 L~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~ 793 (1088)
T KOG4318|consen 714 LQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTE 793 (1088)
T ss_pred HHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHH
Confidence 7788899999999999999988888888777777766544 555666666666665543 3344444444555555
Q ss_pred ChhHHHHHHHHHHhCCCccCC
Q 004856 655 KWNGVAKMRTFLRDRGLKKTP 675 (727)
Q Consensus 655 ~~~~a~~~~~~m~~~~~~~~~ 675 (727)
..+.|.+.+.+..+....++.
T Consensus 794 qkkaAkk~f~r~eeq~~v~ta 814 (1088)
T KOG4318|consen 794 QKKAAKKCFERLEEQLTVSTA 814 (1088)
T ss_pred HHHHHHHHHHHHHHccCCCcH
Confidence 666788899988887554443
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=1.9e-12 Score=134.63 Aligned_cols=524 Identities=12% Similarity=0.020 Sum_probs=285.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhhccCCCC
Q 004856 117 LVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKD 196 (727)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~~~~~~~ 196 (727)
.++-.|...|+.|+.+||..+|.-||..|+++.|- ++..|.-..++....++++++...... ++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A--nd~Enpk------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA--NDAENPK------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc--ccccCCC------CC
Confidence 34455555666666666666666666666666665 666555555555555666666555544 4433332 34
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHH-HH-------hCCCCCChhhHHHHHHHhcccC-C------hhHHHHHHHHHHH
Q 004856 197 LKSRWNSLISLAVQNGKSEKSFELFKL-MR-------MEGAEFDSGTLINLLRSTVELK-S------LELGRIVHCVAVV 261 (727)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~ 261 (727)
...+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|-..+.+|-..- + ..--+.+++..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666544 222222 21 1222211122222222221110 0 0111233344444
Q ss_pred hcCCCChhHHh--H--HHHHhhc-CCChHHHHHHHhcCCC-CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 004856 262 SDFCKDLSVNT--A--LLSMYSK-LASLEDAKMLFDKMSD-KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335 (727)
Q Consensus 262 ~g~~~~~~~~~--~--li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (727)
.+..-.+..++ . ++.-... ...+++-..+.....+ ++..+|.+++.+-..+|+.+.|..++.+|.+.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 43111111111 0 1221111 2234444444444444 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 004856 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415 (727)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (727)
-|..++-+ .++....+.+..-|...|+.|+..|+...+-...+.|....+.+..+.-..-....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 99998876 888899999999999999999999998887777776653333322211111112223333333111111
Q ss_pred h-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---CchHhHHHHHHHHHHhcCCHH
Q 004856 416 S-----LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL---NSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 416 ~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 487 (727)
. .-....+++..-.|+......|..... ..+.|.-+...++-..+..... ..++..+..++.-|
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy------- 389 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY------- 389 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH-------
Confidence 1 122223333333344333333333222 2336666666666655543211 11233333333333
Q ss_pred HHHHHHHhccCCCCCH-HHHHHHHHHHHH---------------cCChHHHHHHHHHHHH----CCCCC-------ChHH
Q 004856 488 MAGELFDEEKIDSKDI-ITWNSMISAYAK---------------HGDWSQCFKLYTQMKQ----SDVRP-------DLIT 540 (727)
Q Consensus 488 ~A~~~~~~~~~~~~~~-~~~~~li~~~~~---------------~g~~~~A~~~~~~m~~----~g~~p-------~~~t 540 (727)
|.+.. .+.. ..++ .-.+... .-+...++.-+..... +-..| -...
T Consensus 390 -----Frr~e--~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 390 -----FRRIE--RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred -----HHHHH--hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 33322 1111 1111 1111111 1111111111111110 00111 1223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHhhHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-----FKPDARVWGPLLSA 615 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~ 615 (727)
-+.++..|++.-+..+++..-+..... -+ ...|..||+.+......++|..+.++.. +.-|...+..+.+.
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 445566666666666666555444432 22 2678999999999999999999999883 33455677788888
Q ss_pred HHHcCCHHHHHHHHHHHHcc---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 004856 616 CKMHSETELAELTAEKLISM---EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKK 673 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 673 (727)
+.+++....+..+++.+.+. .|.....+..+.+.....|+.+...+..+-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88999999999988888762 34345566677778888899999999999888888765
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=6.6e-11 Score=124.26 Aligned_cols=536 Identities=12% Similarity=0.048 Sum_probs=269.2
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhh
Q 004856 110 GEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGM 189 (727)
Q Consensus 110 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~ 189 (727)
|+.++|..++.+..+. .+-+...|.+|-..+-..|+.+.+...+-.+.-.. +.|...|-.+-....+. |.+..|+-
T Consensus 153 g~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~--~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL--GNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc--ccHHHHHH
Confidence 6677777776666654 22344466666666666666666555443222222 33446666666666666 66666665
Q ss_pred h-ccCCCCCcccHHHH---HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHH----HHHHHhcccCChhHHHHHHHHHHH
Q 004856 190 I-QRKFKDLKSRWNSL---ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI----NLLRSTVELKSLELGRIVHCVAVV 261 (727)
Q Consensus 190 ~-~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~ 261 (727)
. .+..+.+..-|-.+ +..|-+.|+...|++.|.++.+...+.|-.-+. .+++.+...++-+.|.+.++..+.
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5 54444333333332 345566666666666666666543211222222 223334444444555555555554
Q ss_pred hc-CCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC----CCeeh----------------------HH----HHHHHHH
Q 004856 262 SD-FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD----KDRVV----------------------WN----IMISAYY 310 (727)
Q Consensus 262 ~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~----------------------~~----~li~~~~ 310 (727)
.+ -..+...++.++.+|.+...++.|......+.. +|..- |+ -++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 22 122334455566666666666666555544432 11111 11 1122222
Q ss_pred hcCCchHHHHHHHHHHHcCCCC--ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 311 QSGFPKESLELLMCMVRSGFRA--DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388 (727)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 388 (727)
+....+....+........+.| +...|.-+..++...|.+..|..++..+...-..-+..+|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333333333222 33445555566666666666666666665554444455566666666666666666
Q ss_pred HHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 004856 389 RKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKL--------EGVEVDFVTIINILPACVNIGALEHVKYL 457 (727)
Q Consensus 389 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 457 (727)
.+.|+.+...++ ..--.|...+.+.|+.++|++.+..+.. .+..|+..........+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 666665543322 2223344455556666666666665431 12333333333344445555555543333
Q ss_pred HHHHHHhC-----C-----------------CchHhHHHHHHHHHHhcCCHHHHHHHHHh--------ccCCCCCHHHH-
Q 004856 458 HGYSMKLG-----L-----------------NSLSSVNTAIFISYAKCGCIEMAGELFDE--------EKIDSKDIITW- 506 (727)
Q Consensus 458 ~~~~~~~~-----~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~- 506 (727)
-..++... + .........++.+-.+.++......-... .. .....-|
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~--~Lsiddwf 626 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR--GLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc--cCcHHHHH
Confidence 32222110 0 00011111122222222221111111000 00 1122223
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChH---H-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hh
Q 004856 507 ---NSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLI---T-FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QE 575 (727)
Q Consensus 507 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~---t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~ 575 (727)
.-++.++++.+++++|+.+...+.+..+.- +.. . =...+.++...+++..|...++.|...++...+ ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 345667888889999998888877643221 222 2 233456667788899999888888876444333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSA--CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
.|+...+.+.+.|+-.--.+++... ...|+......++.+ ....+.+.-|.+.+-++....|++|.+-..++-++.
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 5565556666666544444444443 333444333334433 556777888999999999999988877666665544
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=3.5e-10 Score=118.89 Aligned_cols=576 Identities=12% Similarity=0.039 Sum_probs=302.2
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhccCChhHHHHHH
Q 004856 79 GLLSLSQQVFNSITS---PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE-DTYPFVIRSCSCLLDFISGEKIH 154 (727)
Q Consensus 79 g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 154 (727)
|++++|.+++.++.. .+...|-+|-..|-+.|+.+++...+-.. ....|.. .-|..+-.-....|++..|.-.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777776652 35557777777777777777776654332 2233333 35555555566677777777777
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCc-ccH-------HHHHHHHHhCCCchhHHHHHHHHH
Q 004856 155 AQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLK-SRW-------NSLISLAVQNGKSEKSFELFKLMR 225 (727)
Q Consensus 155 ~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~-~~~-------~~li~~~~~~g~~~~A~~~~~~m~ 225 (727)
..+++...+ +....---..+|-+. |+...|..- .++.+.+. +.| ..++..|...++-+.|++.++...
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~--G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKT--GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHh--ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777766532 222222234556666 776666655 44332221 222 123445555565566776666655
Q ss_pred hCC-CCCChhhHHHHHHHhcccCChhHHHHHHHHHHHh---------------------------cCCCChhHHhHHHHH
Q 004856 226 MEG-AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVS---------------------------DFCKDLSVNTALLSM 277 (727)
Q Consensus 226 ~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~~~~li~~ 277 (727)
..+ -.-+..+++.++..+......+.+.......... +..++..+. .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 421 1223334555555555555555544444333331 112222221 11112
Q ss_pred hh--cCCChHHHHHHHhcCC----CCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 004856 278 YS--KLASLEDAKMLFDKMS----DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 278 ~~--~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
+. +.+...+++.-|-... ..++..|.-+..+|.+.|++.+|+.+|..+...-.--+...|..+..++-..|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 22 2233333333322211 12455677778888888888888888888876644445667777888888888888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-----HH-------HHHHHHHHhcCChHHH
Q 004856 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV-----SW-------SSMIKGYVTHDQSLEA 419 (727)
Q Consensus 352 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~li~~~~~~g~~~~A 419 (727)
+|.+.+..++... +.+..+-..|...|-+.|+.++|.+.+..+..+|.. .| -.....+.+.|+.++=
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888888887664 334556667777788888888888888887766521 11 1223445566766654
Q ss_pred HHHHHHHHHCC----------------------CCCCHHHHHHHHHHHhcCCChHHHHHH------HHHHHHhCCCchH-
Q 004856 420 LRLFSEMKLEG----------------------VEVDFVTIINILPACVNIGALEHVKYL------HGYSMKLGLNSLS- 470 (727)
Q Consensus 420 ~~~~~~m~~~g----------------------~~p~~~t~~~ll~a~~~~~~~~~a~~~------~~~~~~~~~~~~~- 470 (727)
+..-..|.... ..-...+.-.++.+-.+.++....++- .......++..+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 44433332211 111122222233333333332211111 1111223333322
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC-C--CCCC-h
Q 004856 471 -SVNTAIFISYAKCGCIEMAGELFDEEKID----SKDI---ITWNSMISAYAKHGDWSQCFKLYTQMKQS-D--VRPD-L 538 (727)
Q Consensus 471 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~p~-~ 538 (727)
..+.-++..+++.+++++|+.+...+... .++. ..=..++.+....+++..|...++.|... + ..|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34556677788888888888877764421 1111 12234555666778888888888877754 1 1222 2
Q ss_pred HHHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHhHHhcCCCCChhHHHH-HHH
Q 004856 539 ITFLGLLTACVN-----------------------------------AGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVN 582 (727)
Q Consensus 539 ~t~~~ll~~~~~-----------------------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~ 582 (727)
..|+...+.+.+ .+.+..|+..+-..... .|+....+. |.-
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHH
Confidence 233323333333 33445555544444432 344222221 111
Q ss_pred HHH----------hcCCHHHHHHHHHhC-CC-CC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------
Q 004856 583 LLG----------RAGHMDEARELVKDM-PF-KP--DARVWGPLLSACKMHSETELAELTAEKLISMEPEN--------- 639 (727)
Q Consensus 583 ~~~----------~~g~~~~A~~~~~~~-~~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--------- 639 (727)
++. |.-..-....++.+. .. .+ ...++..+..+|...|-...|+..|++++++.|.+
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~ 862 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNY 862 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcc
Confidence 111 111122333333332 11 11 33455556666777777777777777777765432
Q ss_pred ---cchHHHHHHHHHhcCChhHHHHHHH
Q 004856 640 ---AGNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 640 ---~~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
..+-.+|.-+|.++|+.+-|.+++.
T Consensus 863 dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 863 DLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred cHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 1233355557777777777776665
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.1e-14 Score=144.44 Aligned_cols=256 Identities=16% Similarity=0.134 Sum_probs=113.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN-ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
..+.+.|++++|++++++.......|+...|.. +...+-..++.+.|...++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 334444555555555543332221233333322 222333445555555555555544322 44455555555 677888
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++|..++...-...++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|++.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887654335677778888899999999999999999987532 24467778888999999999999999999999
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 566 ESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMP--FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 566 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
+. .|+ ......++..+...|+.+++.++++... ...|+..|..+..++...|+.++|...++++.+..|+|+..
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 65 564 7788899999999999999888887761 23466788889899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...+++++...|+.++|.+++++...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887643
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.8e-11 Score=119.33 Aligned_cols=405 Identities=13% Similarity=0.047 Sum_probs=232.6
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHhCCCCCC-hhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCC-hhHHhHHHHHhh
Q 004856 202 NSLISLAVQNGKSEKSFELFKLMRMEGAEFD-SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYS 279 (727)
Q Consensus 202 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 279 (727)
-...+-|.++|++++|++.+.+..+ ..|| +.-|...-.+|...|+++...+--...++.. |+ +.++..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 3445668889999999999999887 4688 4555556666678899988888777777653 33 334444556677
Q ss_pred cCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHH--------HHHH-cC--CCCChhhHHHHHHHhhcCC
Q 004856 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM--------CMVR-SG--FRADLFTAIAAVSSISTMK 348 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~-~g--~~p~~~t~~~ll~~~~~~~ 348 (727)
..|++++|+.-. +-.++..++....-.--+.+++. +-.+ .+ +.|......+.+..+...-
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 777777765321 22223333322222222222222 2112 11 3355544444444432210
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhcC-------CCCC---h------hHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE-CEDLNCARKIFDSV-------KTKT---V------VSWSSMIKGYV 411 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~~---~------~~~~~li~~~~ 411 (727)
... +...+-+.|...-..+=..+.. ...+..|...+.+- ...+ . .+......-+.
T Consensus 266 ~~~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 KPL--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred ccc--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 000 0000000111111111111111 01222232222211 1111 1 11111112223
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
-.|+.-.|...|+..+.....++.. |..+..+ |....+.++-..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~-----------------------------------y~d~~~~~~~~~ 381 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAA-----------------------------------YADENQSEKMWK 381 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHH-----------------------------------HhhhhccHHHHH
Confidence 3455555555565555543222221 3333333 444445555555
Q ss_pred HHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 492 LFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 492 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
.|+......| |..+|..-...+.-.+++++|..=|++.+. +.| +...|..+.-+..+.+.++++...|++..++
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-- 457 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-- 457 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5554332222 444555555555566778888888888887 556 4667777777777888999999999998875
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD---------ARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++..+++|+.....+...+++++|.+.++.. .+.|+ +.+...++-. .-.+++..|+.+++++++++|..
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchH
Confidence 5555778888888999999999999998877 34443 2222333322 23489999999999999999999
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
..+|..|+.+-.+.|+.++|+++|++...
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999997543
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.3e-11 Score=118.88 Aligned_cols=436 Identities=11% Similarity=0.070 Sum_probs=271.4
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHH-HHHHHhcccCChhHHHHHHHHHHHhcCCCCh----hHHhHHHHHhh
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI-NLLRSTVELKSLELGRIVHCVAVVSDFCKDL----SVNTALLSMYS 279 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~ 279 (727)
..-|..+....+|+..++-+.+..+.|+.-... .+-..+.+.+.+..|.+.|+..+..-+..+. ...+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345666778889999999988888778765442 2344566777788888888877765433322 22333334556
Q ss_pred cCCChHHHHHHHhcCCC--CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 004856 280 KLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMH 357 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 357 (727)
+.|.++.|...|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..-|. +..
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~~~--------- 351 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------KEK--------- 351 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------CCc---------
Confidence 67777777777776543 454443444445555666777777777776544344433221 000
Q ss_pred HHHHHhCCCCChhHHHHHH-----HHHHhcC--CHHH----HHHHHhcCCCCChh---HHH------------------H
Q 004856 358 ANVLRNGSDYQVSVHNSLI-----DMYCECE--DLNC----ARKIFDSVKTKTVV---SWS------------------S 405 (727)
Q Consensus 358 ~~~~~~g~~~~~~~~~~li-----~~~~~~g--~~~~----A~~~~~~~~~~~~~---~~~------------------~ 405 (727)
-.|+....+--+ .-.-+.. +.++ |.++..-+..++-. -|. .
T Consensus 352 -------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 352 -------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred -------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 011111111111 0011110 1111 11222222222210 010 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIIN--ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (727)
-...|.++|+++.|+++++-.....-+.-...-+. .+.-.....++..|.++-+...... ..+....+.-.+.-...
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 12457899999999999988876543322222222 2222223346677777766555432 11222222122223457
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSM---ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
|++++|.+.+.+.. ..|..+-.+| .-.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|+++
T Consensus 504 gd~dka~~~ykeal--~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 504 GDLDKAAEFYKEAL--NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred CcHHHHHHHHHHHH--cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999999999976 4444433333 33567889999999999888752 234677788889999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 561 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..... -++.|+.+...|.+.|-+.|+-..|.++.-+. ..-| +..+...|..-|....-+++++.+++++--+.|+
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 987764 35556889999999999999999999886554 4333 5566666666688888899999999999999996
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
-..--..++.++.+.|++..|.++++....+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5555556777888999999999999987655
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.7e-11 Score=115.83 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=156.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 547 (727)
+.+...+.+.|+-.++.++|...|++.....| ....|+.|..-|...++...|++.+++.++ +.| |...|..|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 34556666777888888888888888554444 567899999999999999999999999998 556 78899999999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
|.-.+...-|+-+|++... ++| |...|.+|.+.|.+.+++++|++.|.+. ..+.+...+..|...+.+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999884 455 4779999999999999999999999887 223455788888889999999999
Q ss_pred HHHHHHHHHc-------cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 625 AELTAEKLIS-------MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 625 A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
|.+.+++-++ .+|....+...|+.-+.+.+++++|..+......
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999998887 3343344555677788899999999887765433
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.3e-09 Score=103.36 Aligned_cols=265 Identities=11% Similarity=0.108 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hcCCChHHHHHHHHHHHHhCCCch
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-------VTIINILPAC---VNIGALEHVKYLHGYSMKLGLNSL 469 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~ 469 (727)
-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.++++++..++ -++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence 345555555555567777777777766643 33321 1121111121 345677777777777776 23444
Q ss_pred HhHHHHHHHH----HHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHH
Q 004856 470 SSVNTAIFIS----YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGL 544 (727)
Q Consensus 470 ~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 544 (727)
..++.-+=-+ -.++.++..|.+++....+..|...+|...|..-.+.++++.+..+|++.++- .| |..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHH
Confidence 4444433333 34678899999999887766888889988898888999999999999999985 45 77888888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHH-----H
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACK-----M 618 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~ 618 (727)
...-...|+.+.|..+|+.+.+...++.....|.+.|+.=...|.++.|..++++. ...+...+|-++..--. +
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 88888899999999999998876344444567888888888999999999999888 44555567777765422 3
Q ss_pred cC-----------CHHHHHHHHHHHHccC--CCCcchHH----HHHHHHHhcCChhHHHHHHHHHHh
Q 004856 619 HS-----------ETELAELTAEKLISME--PENAGNYV----LLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 619 ~g-----------~~~~A~~~~~~~~~~~--p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+ +...|..+|+++...- ..+..--. ...+.-...|.-.+...+-..|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34 5678888888887621 11122222 333444555776666666666644
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1.2e-10 Score=120.91 Aligned_cols=277 Identities=9% Similarity=0.052 Sum_probs=188.8
Q ss_pred cCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhcCCChHHHHH
Q 004856 382 CEDLNCARKIFDSVKTK--TVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII--NILPACVNIGALEHVKY 456 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 456 (727)
.|+++.|++.+....+. ++. .|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665443 122 2222233446778888888888887764 45543332 23456677788888888
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DI--------ITWNSMISAYAKHGDWSQCFKLYT 527 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~--------~~~~~li~~~~~~g~~~~A~~~~~ 527 (727)
.++...+.. +.+..+...+...|.+.|++++|.+++..+.+..+ +. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777765 55667777788888888888888888887654322 11 133334444444555666666777
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 004856 528 QMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA 606 (727)
Q Consensus 528 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 606 (727)
.+-+. .+.+......+..++...|+.++|..++++..+. .|+.... ++.+....++.+++.+.+++. ...|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446777888888889999999999998888753 4444322 233334558888888888877 445644
Q ss_pred h-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 607 R-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 607 ~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
. ...++...|...+++++|...++++++..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 566667778999999999999999999888 456677889999999999999888886543
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.2e-11 Score=125.84 Aligned_cols=277 Identities=13% Similarity=0.065 Sum_probs=215.1
Q ss_pred CHHHHHHHHhcCCCC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHhcCCChHHHHHHH
Q 004856 384 DLNCARKIFDSVKTK--TV-VSWSSMIKGYVTHDQSLEALRLFSEMKLEG-V-EVDFVTIINILPACVNIGALEHVKYLH 458 (727)
Q Consensus 384 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 458 (727)
+.++|...|..+++. |. .....+..+|...+++++|.++|+.+.+.. . .-+...|.++|.-+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886543 33 334557788999999999999999987742 1 12455777776544221 111222
Q ss_pred -HHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 459 -GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 459 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
+.+++. -+..+.+|.++.+.|.-+++.+.|++.|++.....| ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222 255678999999999999999999999999765555 678888888888999999999999999876 556
Q ss_pred C-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHH
Q 004856 537 D-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPL 612 (727)
Q Consensus 537 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 612 (727)
. ...|..+...|.+.++++.|+-.|+++. .+.|. ......+...+.+.|+.++|+++++++ ..+| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4 5578889999999999999999999998 45665 566778888999999999999999998 4555 44444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...+...+++++|.+.++++.++.|++..+|..++.+|.+.|+.+.|..-|..+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5557788899999999999999999999999999999999999999999888776653
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.4e-11 Score=125.36 Aligned_cols=247 Identities=12% Similarity=0.139 Sum_probs=195.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CchHhHHHHHHHHHHhcCCH-HHHH
Q 004856 414 DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL--NSLSSVNTAIFISYAKCGCI-EMAG 490 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~-~~A~ 490 (727)
-+..+|+..|.++... +.-.......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+ --|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3568999999995443 334446667788899999999999999999988542 23566776665332221111 1122
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
++.+.. +-...+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... +
T Consensus 412 ~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~ 483 (638)
T KOG1126|consen 412 DLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G 483 (638)
T ss_pred HHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c
Confidence 333222 34678999999999999999999999999998 678 68899999999999999999999999877 3
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 570 YEPSQ-EHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 570 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.|.- ..|-.|.-.|.|.++++.|+-.|+++ .+.|... ....+...+.+.|+.|+|++++++++-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 44432 24445778899999999999999998 7888554 455555559999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++...+++++|.+.++++++.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 99999999999999999999887
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1.1e-10 Score=121.15 Aligned_cols=255 Identities=11% Similarity=0.024 Sum_probs=154.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHH
Q 004856 345 STMKNIEWGKQMHANVLRNGSDYQVSVH--NSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 419 (727)
.+.|+.+.+...+..+.+. .|+.... ......+...|+++.|...++.+.+. ++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555555555432 2332222 22345666777777777777766543 445666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 420 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
.+++..+.+.+..++. ....+- ...|..++.......+.+...++++.++..
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 7777777776543222 111000 001111222222233445555555555432
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 004856 500 S-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578 (727)
Q Consensus 500 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 578 (727)
. .+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...++ .+-|...+.
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 2 35666777777788888888888888777763 444422 1233334557778888888777754 233455677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 579 SMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
++...+.+.|++++|.+.|+++ ...|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7778888888888888888877 56778777777777788888888888888887664
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.5e-09 Score=105.66 Aligned_cols=415 Identities=13% Similarity=0.123 Sum_probs=204.2
Q ss_pred CChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHHHHHH
Q 004856 282 ASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF-TAIAAVSSISTMKNIEWGKQMH 357 (727)
Q Consensus 282 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~ 357 (727)
+++..|..+|++... ++...|-.-+..=.++.....|..++++.... -|... .|-.-+..--..|++..|.++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 334444444444332 23344444444444444444555554444432 22111 1112222223345555555555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004856 358 ANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435 (727)
Q Consensus 358 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 435 (727)
..-.+. .|+...|++.|+.-.+-..++.|..+++... .|++.+|--...-=.++|....|..+|....+. -.|.
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 544433 4555555555555555555555555555532 455555555555555555555555555554432 1111
Q ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc-hHhHHHHHHHHHHhcCCHHHHHHHHH--------h-ccCCCC
Q 004856 436 ----VTIINILPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELFD--------E-EKIDSK 501 (727)
Q Consensus 436 ----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~--------~-~~~~~~ 501 (727)
..|++...-=.+...++.|..+++..++.-... ....|..+...--+-|+....+...- . +..+.-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 122222222223344555555555555532111 13344444433334444333332222 1 222123
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-------HHHHHHHHH---HhcCCHHHHHHHHHHhHHhcCCC
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-------TFLGLLTAC---VNAGLVEEGRIIFKEMKESYGYE 571 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~ 571 (727)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=.+| ....+.+.+.++++...+. ++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cC
Confidence 5556666666666666777777777766653 455211 122221122 2345666666666666642 22
Q ss_pred CChhHHHHHH----HHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 572 PSQEHYASMV----NLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 572 p~~~~~~~li----~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
-...++.-+- ....|+.++..|.+++..+ |.-|...++...|..-.+.++++....+|++.++-.|.+..++...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 2233333322 2233566666677666655 5566666666666666666667777777777777777666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL 709 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l 709 (727)
+..-...|+++.|+.+|....+....-.|..-|. .-+.|-.....+.-+..+|..|-+.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHh
Confidence 6666666777777777666655544333433331 1233444445555556666544443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.9e-09 Score=102.80 Aligned_cols=286 Identities=10% Similarity=0.098 Sum_probs=170.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCC
Q 004856 307 SAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS--DYQVSVHNSLIDMYCECED 384 (727)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~ 384 (727)
.++-...+.++++.-.......|+.-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 34444556667777777666666544443333333444456677777777777777631 11445555544 333322
Q ss_pred --HH-HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 385 --LN-CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-VTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 385 --~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
+. .|..+++ +.+--+.|...+.+-|.-.++.++|...|++..+. .|.. ..++.+..-|....+...|.+-++.
T Consensus 313 skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1222222 22223445555666677777777788777777764 3433 3445555567777777777777777
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
+++.. +.|-..|-.|.++|.-.+...-|+-.|++....+| |...|.+|..+|.+.++.++|++.|++....| ..+..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 76655 55666667777777777777777777776554444 66777777777777777777777777777655 33556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhc---C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESY---G-YEPS-QEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
.+..|...+-+.++.++|.+.|+...+.. | +.|. .....-|..-+.+.+++++|..+...
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 67777777777777777777776655431 1 2221 22222345555666666666654443
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=3.1e-10 Score=118.65 Aligned_cols=292 Identities=11% Similarity=0.040 Sum_probs=135.2
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 311 QSGFPKESLELLMCMVRSGFRADLF-TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCAR 389 (727)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 389 (727)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+..+.+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777665543 23322 223333444455666666666655544321111122233344445555555555
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 004856 390 KIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466 (727)
Q Consensus 390 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 466 (727)
..++.+.+. +...+..+...|.+.|++++|.+++.++.+.++.+. ..+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-----------------------
Confidence 555544422 333444444555555555555555555554432211 11100000
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH---H
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF---L 542 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~ 542 (727)
..+..++..-......+.....++..+.. +.+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 00000010001111222333333333211 125666667777777777777777777777764 3443311 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHhhHHHHHHHHHHc
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD--M-PFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~ 619 (727)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|++ . ...|+...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111112223555566666655554311111113444556666666666666666662 2 3455555555555556666
Q ss_pred CCHHHHHHHHHHHHc
Q 004856 620 SETELAELTAEKLIS 634 (727)
Q Consensus 620 g~~~~A~~~~~~~~~ 634 (727)
|+.++|.+++++.+.
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=2.3e-10 Score=119.57 Aligned_cols=284 Identities=13% Similarity=0.047 Sum_probs=191.5
Q ss_pred hcCCChHHHHHHHhcCCCC--Ce-ehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh--hHHHHHHHhhcCCChHHH
Q 004856 279 SKLASLEDAKMLFDKMSDK--DR-VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF--TAIAAVSSISTMKNIEWG 353 (727)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 353 (727)
...|+++.|++.+.+..+. +. ..+-.....+.+.|+++.|.+.|.+..+.. |+.. ............|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3579999999999887653 22 223344566778899999999999987653 5543 333346777889999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHH-H---HHHHhcCChHHHHHHHHHH
Q 004856 354 KQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT---VVSWSSM-I---KGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 354 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l-i---~~~~~~g~~~~A~~~~~~m 426 (727)
...++.+.+.. +-+..+...+...|...|++++|.+.+..+.+.. ...+..+ . .++...+..++..+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 5566788999999999999999999999887542 2222111 1 1112222222222233332
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHH-
Q 004856 427 KLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIIT- 505 (727)
Q Consensus 427 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 505 (727)
.... |+ ..+.+...+..+...+...|+.++|.+++++..+..||...
T Consensus 252 ~~~~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 2211 10 01135556666677777778888888777775544454432
Q ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-h--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 506 --WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-L--ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 506 --~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
+..........++.+.+++.+++..+. .|+ . ....++...|.+.|++++|.+.|+..... ...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHH
Confidence 111222223356778888888887764 464 4 45668888899999999999999853332 457888888899
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 004856 581 VNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~ 600 (727)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999988874
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=7.6e-08 Score=97.68 Aligned_cols=446 Identities=13% Similarity=0.150 Sum_probs=231.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHhcCCC-----CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 004856 66 ILSSNLIDSYANLGLLSLSQQVFNSITS-----PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRS 140 (727)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 140 (727)
.+|-.-+....++|++..-+..|+.... .....|...|.-..+.|-++-++.+|++..+ +.|. .-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH--HHHHHHHH
Confidence 4455555666678888888888875431 2344688888888888888889999988876 2333 35666777
Q ss_pred hhccCChhHHHHHHHHHHHHc------CCCchhHHHHHHHhhhccCCCChhhhhhhcc--------CCCCCcccHHHHHH
Q 004856 141 CSCLLDFISGEKIHAQVVKLG------FDSFDDVGDALVEFYIKCDGGFENEKGMIQR--------KFKDLKSRWNSLIS 206 (727)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~y~~~~~g~~~~a~~~~~--------~~~~~~~~~~~li~ 206 (727)
++..+++++|.+.+..++... ...+-..|.-+-+..++. .+.-.-..++. .+..-..-|++|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 778888888888887775321 234445666666655554 22222211111 11222334788888
Q ss_pred HHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHH
Q 004856 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLED 286 (727)
Q Consensus 207 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 286 (727)
-|.+.|.+++|.++|++-.+. ..+...|+.+.++|+.-..-..+..+= .....+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 888888888888888776653 234445555666555432111111100 0000000000 0012233
Q ss_pred HHHHHhcCCCC---------------CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 004856 287 AKMLFDKMSDK---------------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 287 A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
...-|+.+..+ ++..|..-.. +..|++.+-...|.+..+. +.|-...
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~--------------- 383 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV--------------- 383 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC---------------
Confidence 33334433322 2222222111 2234444444444444432 2221110
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHH
Q 004856 352 WGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV-------VSWSSMIKGYVTHDQSLEALRLFS 424 (727)
Q Consensus 352 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 424 (727)
..-...|..+...|-..|+++.|+.+|++..+-+- ..|......=.++.+++.|+++.+
T Consensus 384 --------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 384 --------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred --------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 01122355566666666666666666666544311 234444444455566666666655
Q ss_pred HHHHCCCC----------C-------CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHH
Q 004856 425 EMKLEGVE----------V-------DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 425 ~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (727)
+.....-. | +...+...+..--..|-++..+.+++.+++..+..-..+-| ....+-...-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 54321111 1 11223333444445567777777777777766532222222 122244556677
Q ss_pred HHHHHHHhccCC--CCCH-HHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHhcCCHHHHHH
Q 004856 488 MAGELFDEEKID--SKDI-ITWNSMISAYAKH---GDWSQCFKLYTQMKQSDVRPDLITFLGLLTA--CVNAGLVEEGRI 559 (727)
Q Consensus 488 ~A~~~~~~~~~~--~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~ 559 (727)
++.+++++-... .|++ ..|+..+.-+.+. ...+.|..+|++.++ |++|...-+.-|+.+ -..-|....|..
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 788887762211 4554 4677766555432 257788888888887 566643322222222 223466666667
Q ss_pred HHHHhHH
Q 004856 560 IFKEMKE 566 (727)
Q Consensus 560 ~~~~~~~ 566 (727)
+++++..
T Consensus 608 iyerat~ 614 (835)
T KOG2047|consen 608 IYERATS 614 (835)
T ss_pred HHHHHHh
Confidence 7666543
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=2.5e-12 Score=127.51 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=58.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
+...+..+...+.+.|+.++|.+.+++.....| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 333444444444555555555555554332234 34555556666666666666666655555432 3344455556666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
+...|+.++|..++++..+. .+.|+.....+.+++...|+.++|.++..+
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred hccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 66666666666666665543 223455555666666666666666665544
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.1e-09 Score=106.25 Aligned_cols=257 Identities=14% Similarity=0.066 Sum_probs=177.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 333444555555555555554431 222233333333444444444433332233322 244556666666667777888
Q ss_pred HHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
.+|++.|.+.....|. ...|-.....|+-.|.-++|+..+...-+. ++-....+.-+.--|.+.+..+.|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888888875533443 468999999999999999999998887663 22234445556666888899999999998887
Q ss_pred HhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 566 ESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMP-----FKPD----ARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 566 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
++.|+ +.+.+-+.-+....+.+.+|..+|+..- ..+. ..+++.|..+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 55565 5577777777778889999999988761 1122 235677777899999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 636 EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 636 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|.+..+|..++.+|...|+++.|++.|.+..-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999875443
No 52
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.9e-08 Score=101.23 Aligned_cols=436 Identities=13% Similarity=0.084 Sum_probs=267.2
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhH--HHHHhh--c
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTA--LLSMYS--K 280 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 280 (727)
++-+..+|++++|++...++...+ +-|...+..-+-+..+.+.+++|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 455677888999999999988765 44555777777788888888888744332 22 1112222 355665 7
Q ss_pred CCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHH
Q 004856 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHAN 359 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 359 (727)
.+..++|...++.....|..+...-...+.+.|++++|+++|+.+.+++..--. ..-..++.+-... . -..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HHH
Confidence 899999999999666656556666677888999999999999999877643222 2222222221111 0 011
Q ss_pred HHHhCCCCChhHHHHH---HHHHHhcCCHHHHHHHHhcC--------CCCCh-----h-----HHHHHHHHHHhcCChHH
Q 004856 360 VLRNGSDYQVSVHNSL---IDMYCECEDLNCARKIFDSV--------KTKTV-----V-----SWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 360 ~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~--------~~~~~-----~-----~~~~li~~~~~~g~~~~ 418 (727)
+......| ..+|..+ ...+...|++.+|+++++.. .+.|. . .---|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22222223 2233333 34567789999999999876 22111 1 12234456678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHH----HHHHHHHhcCCChH-HHHHHHHH-----------HHHhCCCchHhHHHHHHHHHHh
Q 004856 419 ALRLFSEMKLEGVEVDFVTI----INILPACVNIGALE-HVKYLHGY-----------SMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 419 A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~-~a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~~ 482 (727)
|..++...+... .+|.... +.++..-....-++ .....++. .....-......-++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999998875 3444222 23332222221111 11111111 111111112223344555544
Q ss_pred cCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAK-HGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
+..+.+.++-...+...|....=+.+..++.. ......+.+++...-+. .|. .......+......|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 55667777777777655655444444444332 23477888888877664 354 3445556677788999999999
Q ss_pred HHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HhhHHHHHHHHHHcCCH
Q 004856 560 IFK--------EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--------PFKPD-ARVWGPLLSACKMHSET 622 (727)
Q Consensus 560 ~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~ 622 (727)
++. .+.+. +..| .+...++..+.+.++-+-|..++.+. ..++. ...|.-+...-.++|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 44433 3444 45667788888888766555555544 22222 22344444445677999
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
++|..+++++.+.+|+|..+...++-+|++.. .+.|..+-+.
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 99999999999999999999999999998874 5566666443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.5e-10 Score=110.39 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=166.4
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
.....+..+...|...|++++|...+++.....| +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788889999999999999998554344 56788888999999999999999999998853 335677888889
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 624 (727)
.+...|++++|...++..............+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864222233557778889999999999999999987 4444 35577777788999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999988888888889999999999999999998877543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.7e-09 Score=100.43 Aligned_cols=311 Identities=12% Similarity=0.157 Sum_probs=159.3
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCCHHH
Q 004856 311 QSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNG-SDYQ--VSVHNSLIDMYCECEDLNC 387 (727)
Q Consensus 311 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~ 387 (727)
-+.++++|.++|-+|.+.. +-+..+-.++-+-+-+.|.++.|.++|+.+.++- ++-+ ..+...|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3568889999999998742 1223334456666777888888888888777652 1111 2233455666777777777
Q ss_pred HHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 004856 388 ARKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL 464 (727)
Q Consensus 388 A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 464 (727)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++...+-++..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 7777777766433 34455667777777777777777666655433322111
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
...|.-|...+.-..+++.|...+.+.....|+ +..--.+...+...|+++.|++.++...+.+..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 111222222333334444444444443222222 22222233445555666666666655555321111334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 623 (727)
|..+|.+.|+.+++...+..+.+. .++...-..+.+... ...-.+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie--------------------------------~~~G~~ 299 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIE--------------------------------LQEGID 299 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHH--------------------------------HhhChH
Confidence 555555566665555555555533 222222222222222 222233
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIY---AAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEF 689 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f 689 (727)
.|.....+-+...| +...+..|+... ..-|++.+-...++.|....++..|.+.....+-..|.|
T Consensus 300 ~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 300 AAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 34444444444444 222333333221 122556777777777777767666665554444444444
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=1.6e-12 Score=89.77 Aligned_cols=50 Identities=26% Similarity=0.538 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 004856 94 PNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSC 143 (727)
Q Consensus 94 ~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (727)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999875
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=7.4e-09 Score=99.50 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=163.3
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004856 312 SGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391 (727)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 391 (727)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+.+.+..+.+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777776655554332 3345555566667777777777777776664455666666677777777887777766
Q ss_pred HhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhcCCChHHHHHHHHHH
Q 004856 392 FDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-------TIINILPACVNIGALEHVKYLHGYS 461 (727)
Q Consensus 392 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 461 (727)
.+++. .+++........+|.+.|++.+...++.+|.+.|+--|+. ++..++.-+...+..+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~--------- 246 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE--------- 246 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch---------
Confidence 55443 4466777778888888888888888888888877544432 2333333322222222
Q ss_pred HHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 004856 462 MKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540 (727)
Q Consensus 462 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (727)
.-...++..+.. +.++..-.+++.-+.+.|+.++|.++.++..+++..|+.
T Consensus 247 --------------------------gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-- 298 (400)
T COG3071 247 --------------------------GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-- 298 (400)
T ss_pred --------------------------HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--
Confidence 222233332211 223334445555566666666666666666665555551
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~ 619 (727)
...-.+.+.++.+.-++..+...+..+..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++.+.
T Consensus 299 --~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 --CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred --HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 122234455555555555555554323333 45556666666666666666666654 4556666666666666666
Q ss_pred CCHHHHHHHHHHHHc
Q 004856 620 SETELAELTAEKLIS 634 (727)
Q Consensus 620 g~~~~A~~~~~~~~~ 634 (727)
|+.++|.++.++.+.
T Consensus 375 g~~~~A~~~r~e~L~ 389 (400)
T COG3071 375 GEPEEAEQVRREALL 389 (400)
T ss_pred CChHHHHHHHHHHHH
Confidence 666666666665553
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=7e-09 Score=97.40 Aligned_cols=316 Identities=15% Similarity=0.150 Sum_probs=157.4
Q ss_pred CChHHHHHHHhcCCCC--CeehHHH-HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhh--cCCChHHHHHH
Q 004856 282 ASLEDAKMLFDKMSDK--DRVVWNI-MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIS--TMKNIEWGKQM 356 (727)
Q Consensus 282 g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~ 356 (727)
-.+++|+.++.++... +-...|. +.-+|.+..-++-+.+++.-..+. -||. |+..=+.+|. +.=+-..+++-
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHH
Confidence 3456666666665543 2233333 334566777777777777666543 2332 2223333332 22111222222
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004856 357 HANVLRNGSDYQVSVHNSLIDMYCEC-----EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV 431 (727)
Q Consensus 357 ~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 431 (727)
...+.+.+-.. --.+.-.++. ..-+.|.+++-.+.+.=+..--.|+--|.+.++..+|..+.+++.. .
T Consensus 242 ~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--t 314 (557)
T KOG3785|consen 242 KKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--T 314 (557)
T ss_pred HHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--C
Confidence 22222221110 0011111221 2234455555444333333344456667888888888888777642 2
Q ss_pred CCCHHHHHHHHHHH-h----cCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHH
Q 004856 432 EVDFVTIINILPAC-V----NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITW 506 (727)
Q Consensus 432 ~p~~~t~~~ll~a~-~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 506 (727)
.|-....-.+..+- . ....+..|.+.|+..-..+...|+ +.--
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT--------------------------------IpGR 362 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT--------------------------------IPGR 362 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc--------------------------------ccch
Confidence 33333332222221 1 111223334444433333322221 1223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHH
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-SMVNLLG 585 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~ 585 (727)
.++.+.+.-..++++.+..++.....- .-|..--..+.++.+..|.+.+|+++|-.+... .+ .|..+|. .|.++|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHH
Confidence 344555555556677766666666542 223332334567777777777777777665522 12 3344444 3556777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 586 RAGHMDEARELVKDMPFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
+++.++-|.+++-++.-..+..+...+|.- |.+.+.+=-|-..|+.+..++| ++..|
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 777887787777777544455555555554 7777777777777777777777 34433
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5.7e-12 Score=87.06 Aligned_cols=50 Identities=32% Similarity=0.338 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcc
Q 004856 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVE 245 (727)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 245 (727)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.8e-08 Score=94.53 Aligned_cols=308 Identities=8% Similarity=-0.037 Sum_probs=212.8
Q ss_pred CCChhhHHHHHHHhhc--CCChHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHH-
Q 004856 331 RADLFTAIAAVSSIST--MKNIEWGKQMHANVLR-NGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSM- 406 (727)
Q Consensus 331 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l- 406 (727)
.|...+....+.+++. .++-..+.+.+-.+.. .-++.|+.....+...|...|+..+|+..|++...-|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444445554443 3333344444444433 34677888899999999999999999999998776555433322
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 004856 407 --IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484 (727)
Q Consensus 407 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (727)
.-.+.+.|+.+....+...+.... +-....|..-+...-...+++.|..+-...++.. +.+...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 333467888888887777776532 1111222222233345567777777777766654 233344444445677889
Q ss_pred CHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHh-cCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL-TACVN-AGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~-~g~~~~a~~~~ 561 (727)
+.++|.-.|+......| +..+|.-|+.+|...|++.+|..+-+..... ++.+..+...+. ..|.- ..--++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999999998554454 7889999999999999999999888776653 344666666553 33332 22347788888
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 562 KEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 562 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++-. .+.|+ ....+.+...+.+.|..++++.++++. ...||....+.|...+...+.+++|...|..++.++|++
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8776 45676 456777888999999999999999987 667899999999999999999999999999999999976
Q ss_pred cchHH
Q 004856 640 AGNYV 644 (727)
Q Consensus 640 ~~~~~ 644 (727)
..+..
T Consensus 505 ~~sl~ 509 (564)
T KOG1174|consen 505 KRTLR 509 (564)
T ss_pred hHHHH
Confidence 65443
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=9.8e-09 Score=98.66 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=178.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHH
Q 004856 211 NGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKML 290 (727)
Q Consensus 211 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (727)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-.++.++.+....++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766655222 2345555666677788888888888888775566777777777788888888888777
Q ss_pred HhcCC---CCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCC
Q 004856 291 FDKMS---DKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDY 367 (727)
Q Consensus 291 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 367 (727)
.+++. .+++........+|.+.|++.+...++..|.+.|+--|... .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 66554 35777788888899999999999999999988876544322 111
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA 444 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 444 (727)
...++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 112345555555555555555556666653 2566666777888888999999988888888776666222 223
Q ss_pred HhcCCChHHHHHHHHHHHH-hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 523 (727)
+.+.++.+.-.+..+.-.+ .+. +...+.+|...|.+++.+.+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-----------------------------------~p~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-----------------------------------DPLLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-----------------------------------ChhHHHHHHHHHHHhhHHHHHH
Confidence 4445554444443333222 222 2234444555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+.|+...+ ..|+..+|+.+..++.+.|+.++|.+.+++..
T Consensus 349 ~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 349 EALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55554444 34555555555555555555555555555444
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.8e-08 Score=92.59 Aligned_cols=253 Identities=12% Similarity=0.126 Sum_probs=185.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCch---HhHHHHHHHHHHhcCCHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL---SSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 487 (727)
-+.+.++|.++|-+|.+. .|. ..+-.++.+.+.+.|..+.|..+|+.+.+..--+. ....-.|..=|-+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356777888888888763 222 22335566677778888888888877776432221 122334566688999999
Q ss_pred HHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 488 MAGELFDEEKI-DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVEEGRIIFK 562 (727)
Q Consensus 488 ~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~ 562 (727)
.|+.+|..+.. ..--......|+..|-...+|++|++.-+++...+-++.. .-|.-|...+....+++.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999998763 1223456778899999999999999999999987655542 246667777777889999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA--RVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 563 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
+..+. -+..+..--.+.+.....|+++.|.+.++.. ...|+. .+...|..+|.+.|+.+++...+.++.+..+ .
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-G 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-C
Confidence 98864 2233445556788999999999999999988 445654 3677888889999999999999999999887 5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..-..+...-....-.++|..++.+-..+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 666667777666666677777776654444
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.4e-08 Score=104.96 Aligned_cols=232 Identities=19% Similarity=0.235 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh-----C--CCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------C
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKL-----G--LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--------S 500 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~ 500 (727)
.+...+...|...|+++.|..+++...+. | .+.-....+.+...|...+++++|..+|+++... .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777888888888888887777664 2 2222334455777889999999998888873211 2
Q ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--C
Q 004856 501 KD-IITWNSMISAYAKHGDWSQCFKLYTQMKQ-----SDVRP-D-LITFLGLLTACVNAGLVEEGRIIFKEMKESYG--Y 570 (727)
Q Consensus 501 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 570 (727)
|. ..+++.|..+|.+.|++++|...+++..+ .|..+ . ..-++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 32 35788888899999999998888777653 12222 2 23467778889999999999999988766533 2
Q ss_pred CCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004856 571 EPS----QEHYASMVNLLGRAGHMDEARELVKDM---------PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISM- 635 (727)
Q Consensus 571 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 635 (727)
.++ ..+++.|...|.+.|++++|+++++++ +..+. ...++.+...|.+.++.++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357999999999999999999999887 11232 346777778899999999999999988763
Q ss_pred ---CCCC---cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 636 ---EPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 636 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
.|++ ..+|..|+.+|...|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4678899999999999999999988775
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.1e-06 Score=93.59 Aligned_cols=464 Identities=13% Similarity=0.103 Sum_probs=262.8
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC--CCcchHH----HHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 004856 68 SSNLIDSYANLGLLSLSQQVFNSITS--PNSLLYG----TILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSC 141 (727)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~n----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 141 (727)
+..+.+.|-++|-...|++.+..+.. +.++.-+ .-+.+|.-.-.++++.++++.|...++.-|..+.-.+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67888999999999999998887763 2222211 12345555567899999999999888877776655544444
Q ss_pred hccCChhHHHHHHHHHHH-----------HcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCC--CC-----------
Q 004856 142 SCLLDFISGEKIHAQVVK-----------LGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKF--KD----------- 196 (727)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~--~~----------- 196 (727)
...-....-.++++.... ..+..|+.+.-.-|.+.++. |.+.+.+++ .+.. .|
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt--~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT--GQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh--ccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 433233333333333321 13456777777788888999 999999888 4321 10
Q ss_pred ------------------CcccH------HHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhH-------------HHH
Q 004856 197 ------------------LKSRW------NSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL-------------INL 239 (727)
Q Consensus 197 ------------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------~~l 239 (727)
|.+.| -..|..|++.-++.+.-.+...+..-.. +.... .-+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHH
Confidence 11111 1235556655555544444444433211 11111 122
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcC------------CCCCee-------
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKM------------SDKDRV------- 300 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~------- 300 (727)
..-+-+.++++.-...++..+..| ..|+.++|+|...|...++-.+- ++.+- .++|+.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 233444556666666777777777 45788888888888765443221 11110 111110
Q ss_pred ----------------hHHHHHHHHHhcCCch---HH--------HHHHHHHHHcCCC--CChhhHHHHHHHhhcCCChH
Q 004856 301 ----------------VWNIMISAYYQSGFPK---ES--------LELLMCMVRSGFR--ADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 301 ----------------~~~~li~~~~~~g~~~---~A--------~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~ 351 (727)
.|-...+.+.+..+.+ +. ..+.++....+++ .|....+..+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 1111222222222221 11 1223333333322 23344444555555555555
Q ss_pred HHHHHHHHHHHhC--CCCChhHHHHHH---------------------------HHHHhcCCHHHHHHHHhcCCC-----
Q 004856 352 WGKQMHANVLRNG--SDYQVSVHNSLI---------------------------DMYCECEDLNCARKIFDSVKT----- 397 (727)
Q Consensus 352 ~a~~~~~~~~~~g--~~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~~~~----- 397 (727)
+-.++++.++-.. +.-+...-|.|+ ......+-+++|..+|+...-
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 5555555443211 111111112221 122233445666666654321
Q ss_pred --------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 004856 398 --------------------KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457 (727)
Q Consensus 398 --------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 457 (727)
..+..|+.+..+-.+.|...+|++-|-+. -|+..|.-++..+++.|.+++-..+
T Consensus 1082 ~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1082 QVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 13457899999999999999998887543 4667899999999999999999999
Q ss_pred HHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004856 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (727)
+.++.+..-.|. +-+.||-+|++.+++.+-++++. .||+.....+.+-|...|.++.|.-+|...
T Consensus 1156 L~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------- 1220 (1666)
T KOG0985|consen 1156 LLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA-----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------- 1220 (1666)
T ss_pred HHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------
Confidence 988888765554 44678889999999998888765 566666666666666666666665555432
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
..|..|...+...|.++.|...
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555554433
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=8.4e-07 Score=92.50 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA-RVWGPLLSACKM 618 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~ 618 (727)
|......+.+.+..++|...+.+.... .+.....|......+...|.+++|.+.|... .+.|+. .+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445566788888999999888887742 2334567888888899999999999999877 677865 467777778999
Q ss_pred cCCHHHHHH--HHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 619 HSETELAEL--TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 619 ~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|+...|.. ++..+++++|.++.+|..++.++.+.|+.++|.+-|....+-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 998888888 999999999999999999999999999999999999987654
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=5.3e-09 Score=113.68 Aligned_cols=245 Identities=13% Similarity=0.045 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---------cCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 004856 416 SLEALRLFSEMKLEGVEVDFV-TIINILPACV---------NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC 485 (727)
Q Consensus 416 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 485 (727)
.++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+.+.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45677777776654 34432 3333322221 2344677888888777765 4466677777788888999
Q ss_pred HHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004856 486 IEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKE 563 (727)
Q Consensus 486 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~ 563 (727)
+++|...|++.....| +...|..+...+...|++++|+..+++..+ +.|+. ..+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998655556 466788888999999999999999999998 45653 3344445556778999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 564 MKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARV-WGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 564 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+... ..|+ ...+..+...|...|+.++|...+.+. +..|+... ++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8754 2343 556777888999999999999999987 44555444 444444466666 478887887776332222
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..+..+..+|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2222366677778888777666 7776653
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=1.7e-06 Score=88.20 Aligned_cols=265 Identities=13% Similarity=0.096 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----------C
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD---FVTIINILPACVNIGALEHVKYLHGYSMKLG-----------L 466 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----------~ 466 (727)
..|..+...|-.+|+.+.|..+|++...-..+-- ..+|..-...=.+..+++.|..+.+.+.... .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999999876432211 1223333333345567777877776654322 2
Q ss_pred Cch------HhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004856 467 NSL------SSVNTAIFISYAKCGCIEMAGELFDEEKID---SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 467 ~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (727)
++. ..+|...++..-..|-++....+++++... .|..+ -.....+-.+.-++++.++|++-+..--.|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 222 234455566667788888888888875422 33322 2222334567778999999988766533455
Q ss_pred h-HHHHHHHHHHHh---cCCHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--Hh
Q 004856 538 L-ITFLGLLTACVN---AGLVEEGRIIFKEMKESYGYEPSQE--HYASMVNLLGRAGHMDEARELVKDMP--FKPD--AR 607 (727)
Q Consensus 538 ~-~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~ 607 (727)
. ..|+..+.-+.+ .-.++.|..+|++..+ |.+|... .|-.....=.+.|....|+++++++. .++. ..
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~ 623 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3 356666655544 3478999999999996 6766533 23333333346688999999999983 3332 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAG--NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.||..|.--...=-+.....+|+++++.-|++.. .....+++-.+.|..+.|+.++..-.+.
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 6777765433222244567789999988775432 3345667788889999999998766554
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-07 Score=95.58 Aligned_cols=263 Identities=10% Similarity=-0.002 Sum_probs=143.3
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+....-.-..-+...+++.+..++++...+. .++....+..=|.++...|+..+-..+-..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333444445566677788888888877665 2344445555555666666665555554455544 3455667888888
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHH
Q 004856 378 MYCECEDLNCARKIFDSVKTKTV---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 454 (727)
-|.-.|+..+|++.|.+...-|. ..|-.....|+-.|..++|+..+...-+.- +-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999987665443 578888899999999999988887765421 11111111222335555666666
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC----C---CC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 004856 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI----D---SK-DIITWNSMISAYAKHGDWSQCFKLY 526 (727)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~---~~-~~~~~~~li~~~~~~g~~~~A~~~~ 526 (727)
.+++..+.... +.|+.+.+-+.-+....+.+.+|...|+.... . .+ -..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 66665555433 33444444444444444555555555543210 0 00 1123344444444444444444444
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 527 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++.+... +-|..|+.++.-.|...|.++.|...|.+..
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4444321 1234444444444444444444444444443
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.17 E-value=3.2e-07 Score=94.32 Aligned_cols=341 Identities=14% Similarity=0.076 Sum_probs=197.0
Q ss_pred hHHHHHhhcCCChHHHHHHHhcC--CCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCC
Q 004856 272 TALLSMYSKLASLEDAKMLFDKM--SDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKN 349 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 349 (727)
-+-|..|.+.|.+..|.+.-..- ...|......+..++.+..-+++|-++|+++.. +...+.++.+-..
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 34577788888777766543221 123555555566666666667777777776642 1222333333333
Q ss_pred hHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 350 IEWGKQMHANVLRNGSDYQVSV-HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 350 ~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
+..|.++-+.. ++..++. -..-..-+...|+++.|...|-+... .-.-|.+-.....+.+|+.+++.++.
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 34444433222 1111111 11222334456777777666644321 11234455667788888888888776
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 508 (727)
+.. -..-|..+...|+..|+++.|+++|-.. ..++--|++|.+.|++++|.++-.+..+.+..+..|-+
T Consensus 761 qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred hcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 532 2334566677788888888888876532 23455677888888888888887776532334556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+..+++.++-.. ..-..+...+..-|...|
T Consensus 830 kaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhcc
Confidence 6666778888888887775442 3542 35667777887777776654321 111335556677777788
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 589 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
++.+|+.-|-+.+ -|.+-++.|...+-+++|-++.+ ...-.|..-.....++ +.=--+.|.+++++
T Consensus 897 ~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwa--ksiggdaavkllnk 962 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWA--KSIGGDAAVKLLNK 962 (1636)
T ss_pred ChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHH--HhhCcHHHHHHHHh
Confidence 8888888777664 45666677777776666655433 2233334333333333 33333466776665
No 69
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=5e-07 Score=94.16 Aligned_cols=541 Identities=12% Similarity=0.065 Sum_probs=299.5
Q ss_pred CCchhhHHHHHH--HHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhC-C-------CCCCc
Q 004856 62 HQNLILSSNLID--SYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-S-------MYPAE 131 (727)
Q Consensus 62 ~~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~-g-------~~p~~ 131 (727)
..|..+...+++ .|..-|+.+.|.+-.+.+. +-..|..|.+-|++..+.+-|.-++..|... | .+-+.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 457777777765 4677899999988777665 4456999999999999999999988888542 2 12121
Q ss_pred ccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC-CCcccHHHHHHHHH
Q 004856 132 DTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK-DLKSRWNSLISLAV 209 (727)
Q Consensus 132 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~-~~~~~~~~li~~~~ 209 (727)
.+=..+.-.....|.+++|+.++++-.+.. -|=..|... |.+++|.++ +.-.+ .-..||.....-+-
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~--g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQ--GMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhc--ccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 333333333457899999999999887643 344566667 999999988 43222 12234544555555
Q ss_pred hCCCchhHHHHHHHHH----------hCC---------CCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhH
Q 004856 210 QNGKSEKSFELFKLMR----------MEG---------AEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV 270 (727)
Q Consensus 210 ~~g~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 270 (727)
..++.+.|++.|++-. ... -..|...|.--..-+-..|+.+.|..+|..+..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 5677777777776532 110 011222222222223345667777766665543
Q ss_pred HhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC--
Q 004856 271 NTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK-- 348 (727)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-- 348 (727)
|-+++...|-.|+.++|-++-++- .|......+.+-|-..|++.+|..+|.+.+ +|...|+.|-..+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHH
Confidence 355677777788888888877653 356677778888889999999999998764 3444444433222
Q ss_pred -------------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--------------CCChh
Q 004856 349 -------------NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--------------TKTVV 401 (727)
Q Consensus 349 -------------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~~~~~ 401 (727)
+.-.|-+.|++ .|.. ....+..|-+.|.+.+|.++-=+-. ..|+.
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 22222223322 1211 2233456777777777766521111 12444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCc---hHhHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK--LGLNS---LSSVNTAI 476 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~~---~~~~~~~l 476 (727)
..+--..-+..+.++++|..++-...+ |...+..|...+- .-.+++-+.|.- .+.++ ...+...+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 455555566677777777777655443 3444555544332 112222222211 11111 12344555
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHH-------------HHHHHHCCCCCChHHHHH
Q 004856 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL-------------YTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~t~~~ 543 (727)
.+.+.+.|.+..|-+-|.+... - -.-+.++.+.|+.++..-. -+-+.....+.|+.+...
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQAGd----K---l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~ 1224 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQAGD----K---LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKD 1224 (1416)
T ss_pred HHHHHhccchHHHHHHHhhhhh----H---HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhh
Confidence 6667777777777776665331 0 0123455555554432110 011122224445555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHh-hHHH----------H
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR-VWGP----------L 612 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~----------l 612 (727)
++.-|.+...++.--..|..... ..++.|..+-. ..|-+++|.+.+.++..+.+.. .++. .
T Consensus 1225 I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~ 1296 (1416)
T KOG3617|consen 1225 IETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQ 1296 (1416)
T ss_pred hHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 55555444333333333332221 11122222111 1345667777777664332221 2222 2
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 613 LSACK-MHSETELAELTAEKLISMEPEN------AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 613 l~~~~-~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.... ...|..+.+.-++.+++ +|.. ...|..|+..|....+|.+|-+.+..|..+
T Consensus 1297 l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1297 LRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 22211 12245555555555554 2322 356778999999999999999999999876
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=9.9e-08 Score=93.86 Aligned_cols=404 Identities=10% Similarity=-0.009 Sum_probs=185.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCc-hhHHHHHHHhh
Q 004856 99 YGTILKNLSKFGEYEKTLLVYKQMALQSMYPA-EDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSF-DDVGDALVEFY 176 (727)
Q Consensus 99 ~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y 176 (727)
+-..-+-|-++|.+++|++.|.+.+. ..|| ++-|.....+|...|+++.+.+--...++. .|+ +.++.---+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 33445667788999999999999887 4677 566666777778888888776655554443 233 22333333444
Q ss_pred hccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHH---------HHhCC--CCCChhhHHHHHHHhcc
Q 004856 177 IKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKL---------MRMEG--AEFDSGTLINLLRSTVE 245 (727)
Q Consensus 177 ~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~t~~~ll~~~~~ 245 (727)
-.. |++++|..- +|-.++..+|..+.-.--+.+++++ |.+.+ +-|+.....+....+..
T Consensus 194 E~l--g~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 194 EQL--GKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred Hhh--ccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 444 666665442 1122233333222222222233322 12122 34555444444443321
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcC-CChHHHHHHHhcCC-------CC---Ceeh------HHHHHHH
Q 004856 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL-ASLEDAKMLFDKMS-------DK---DRVV------WNIMISA 308 (727)
Q Consensus 246 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-------~~---~~~~------~~~li~~ 308 (727)
.-.. .+...+...|...-..+-..+... ..+..|...+.+-. .. |... .+.-..-
T Consensus 264 ~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 264 DPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred cccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 1000 000000000111111111111110 11222222222110 00 1111 1111111
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 309 YYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCA 388 (727)
Q Consensus 309 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 388 (727)
+.-.|+...|...|+........++. .|..+-..+....+.++..+.|....+.. +-+..+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 22345666666666666554322222 14444455555555555555555555443 22334444444444444555555
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 004856 389 RKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG 465 (727)
Q Consensus 389 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 465 (727)
..=|++...- ++..|--+-.+.-+.+++++++..|++.+..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk------------------------------------ 457 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK------------------------------------ 457 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------------
Confidence 5555544432 2233333333333444555555555554443
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 466 LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD---------IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 466 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
++.-+.+|+-....+...+++++|.+.|+......|+ .....+++. +.-.+++..|+.++++..+ +.|
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dp 534 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDP 534 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCc
Confidence 2334444555555555555555555555542222222 111111111 1133677777777777776 445
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 537 -DLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 537 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
....|..|...-.+.|+.++|+++|++..
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35667777777777777777777777655
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.2e-08 Score=101.29 Aligned_cols=213 Identities=13% Similarity=0.132 Sum_probs=149.0
Q ss_pred ChHHHHHHHHHHHHh-CCCc--hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 004856 450 ALEHVKYLHGYSMKL-GLNS--LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
..+.+..-+..++.. ...| ....+..+...|.+.|+.++|...|++.....| +...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344455555555542 2222 245567777788999999999999998655455 578899999999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 004856 526 YTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PF 602 (727)
Q Consensus 526 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 602 (727)
|++..+ +.|+ ..++..+..++...|++++|.+.++...+. .|+..........+...++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 5674 677888888899999999999999998864 454332222223345678899999999765 22
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-------ccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 603 KPDARVWGPLLSACKMHSETELAELTAEKLI-------SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 603 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
.|+. |.. .......|+...+ ..++.+. ++.|+.+.+|..++.++.+.|++++|+..+++..+...
T Consensus 196 ~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332 321 1222334544333 2333333 34566678999999999999999999999998876643
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=3.6e-08 Score=95.18 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+....+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 3456667777777888888888877776542 1123334444444555555555555554444432
Q ss_pred HHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
+.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|.
T Consensus 96 --------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 96 --------------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred --------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 2233445555555556666666666666655432112 2334444555566666666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
..+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+...
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666665542 1222445555666666666666666666554 2222 3334444444455666666666665555443
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3.3e-09 Score=98.50 Aligned_cols=228 Identities=12% Similarity=0.039 Sum_probs=131.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 004856 404 SSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC 483 (727)
Q Consensus 404 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 483 (727)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+...+..|..++..-.+.- +.++....-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g-------- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLG-------- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhh--------
Confidence 45667777777777777777766654 3444455555555555555555554444433321 222222223
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKE 563 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 563 (727)
+...+-..++.++|.++|+...+.. +.|......+...|.-.++.+-|+.++++
T Consensus 296 -------------------------~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 296 -------------------------QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred -------------------------hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 3344444455555555555554421 11333444444444445555555555555
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 564 MKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 564 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+.+- |+ .+++.|+.+.-+|.-.++++-++..|++. .-.|+ ..+|..+.......||+..|.+.|+-++..+|+
T Consensus 350 iLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 5543 32 23444555554444555555555555444 11222 235666666667788888888888888888888
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 639 NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+..+++.|+-.-.+.|+.++|+.+++..+...
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88888888888888899999988888776654
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=1.3e-07 Score=97.97 Aligned_cols=237 Identities=15% Similarity=0.184 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CC
Q 004856 370 SVHNSLIDMYCECEDLNCARKIFDSVKT----------KTVV-SWSSMIKGYVTHDQSLEALRLFSEMKLE-----G-VE 432 (727)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~ 432 (727)
.+...|..+|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444566666667777766666654432 1221 2344667788899999999999888642 1 11
Q ss_pred CC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC-CCCCHH-HHHHH
Q 004856 433 VD-FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI-DSKDII-TWNSM 509 (727)
Q Consensus 433 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~l 509 (727)
|. ..+++.|-.+|.+.|++++|...++.+. ++++.... ..|.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al----------------------------~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERAL----------------------------EIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------------HHHHHhhccChHHHHHHHHHH
Confidence 11 1233444444555555555544433322 22222111 133333 45566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCC-hhH
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQS---DVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESY-----GYEPS-QEH 576 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 576 (727)
+..|...+++++|..++++..+. -+.++ ..+++.|...|.+.|++++|.++++++.... +..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788888888888888766542 12233 3578899999999999999999999877542 11222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM--------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
++.|...|.+.++..+|.++|.+. +..|+. .+|..|...|...|+++.|+++.+++..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888898899988888888776 233444 4788888889999999999999988874
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=7.1e-09 Score=96.37 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=159.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHhcC
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT-FLGLLTACVNAG 552 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g 552 (727)
+-+...|.+.|.+.+|+..|+.-....|-+.+|-.|-.+|.+..++..|+.++.+-.+. .|-.+| .....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 45667889999999999999986655888899999999999999999999999999884 565555 456777888899
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---PFKPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+.++|.++++...+. .+.+++...++...|.-.+++|-|+.+++++ +. -++..|+.+.-.|.-.++++.+...+
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999864 3446777888888999999999999999876 43 36677888888888999999999999
Q ss_pred HHHHccC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 630 EKLISME--PE-NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 630 ~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++++... |+ -.+.|..++.+....|++.-|.+-|+.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 9999853 32 4578999999999999999999988876543
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=2.4e-08 Score=108.62 Aligned_cols=212 Identities=13% Similarity=0.030 Sum_probs=162.0
Q ss_pred ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH---------hcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCh
Q 004856 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA---------KCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDW 519 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 519 (727)
++++|..+++...+.. +.+...+..+..+|. ..+++++|...+++.....| +...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578888888887764 233455555554443 23458999999998665555 677888888899999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 004856 520 SQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
++|+..|++..+. .|+ ...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999984 564 667888999999999999999999999854 5553 23334455567789999999999
Q ss_pred HhC--CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 598 KDM--PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 598 ~~~--~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++. ...|+.. .+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 887 2235444 45556666889999999999999988888877777778888888888 4888877776654
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.8e-05 Score=81.69 Aligned_cols=159 Identities=16% Similarity=0.247 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFK 562 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 562 (727)
.+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.|++-.+++.
T Consensus 1088 i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345555555554433 3467999999999999999998877432 367789999999999999999999998
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 563 EMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 563 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
..+++ .-.|.+. +.||-+|++.+++.+-++++. -|+..-...+..-|...|.++.|.-+|. +.+.
T Consensus 1158 MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN 1222 (1666)
T KOG0985|consen 1158 MARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSN 1222 (1666)
T ss_pred HHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------Hhhh
Confidence 88876 6666654 578999999999999888774 4777777788888999999999988887 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|..|+..+...|.+..|...-++.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777777777777776554443
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.4e-06 Score=80.77 Aligned_cols=263 Identities=11% Similarity=-0.019 Sum_probs=137.0
Q ss_pred CCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHH---HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 004856 265 CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIM---ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV 341 (727)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 341 (727)
+.++.....+...|...|+.++|+..|++...-|+.+...| .-.+.+.|++++...+...+.... +-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 33445555556666666666666666665544333222221 122345566666655555554321 11222222222
Q ss_pred HHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--C-CChhHHHHHHHHHHhcCChHH
Q 004856 342 SSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK--T-KTVVSWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~ 418 (727)
..+-..++++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|+... . -+..+|..|+..|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 23334455555555555554432 1122223233345566777787777776544 2 266788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004856 419 ALRLFSEMKLEGVEVDFVTIINIL-PACVN-IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496 (727)
Q Consensus 419 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (727)
|.-+-+...+. ...+..+...+. ..|.- ...-++|..+++...+.. +.-....+.+...+...|..+++..++++.
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 77666554432 222333433331 22221 222355666655554432 112233345555566666666666666664
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 497 KIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 497 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
....||....+.|...+...+.+++|++.|.....
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44456666666666666666666666666666655
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=5e-08 Score=86.90 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVN 582 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 582 (727)
+...+.-+|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3445667889999999999999999984 564 66888999999999999999999999884 4554 668888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 583 LLGRAGHMDEARELVKDMPFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
.+|..|++++|...|+++-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998843442 34777777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004856 659 VAKMRTFLRDRGL 671 (727)
Q Consensus 659 a~~~~~~m~~~~~ 671 (727)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998877754
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.8e-07 Score=91.59 Aligned_cols=228 Identities=11% Similarity=-0.026 Sum_probs=144.3
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 414 DQSLEALRLFSEMKLEG-VEVD--FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...+....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555421 1222 2334444455666666666666666666654 345677778888888888888888
Q ss_pred HHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 491 ELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 491 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
..|++.....| +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...++.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 88888655455 4678888888899999999999999999884 565432222222344567899999999776543
Q ss_pred CCCChhHHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-
Q 004856 570 YEPSQEHYASMVNLLGRAGHMD--EARELVKDM-PF----KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA- 640 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~- 640 (727)
..|+...+ .++..+ .|+.. ++.+.+.+. .. .| ....|..+...+.+.|+.++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 34443222 333333 44443 333333322 11 12 234788888889999999999999999999997543
Q ss_pred chHHHHHHH
Q 004856 641 GNYVLLSNI 649 (727)
Q Consensus 641 ~~~~~l~~~ 649 (727)
.....++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333344443
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=7.9e-05 Score=77.30 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHH---------------hcCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKE---------------SYGYE---PSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD 605 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~---------------~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 605 (727)
.|.+++....|.+|.++-+++.. .-|-- .++. .-+-++++...++|++|++.-.+-..+|-
T Consensus 1245 aida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qnykpi 1323 (1636)
T KOG3616|consen 1245 AIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNYKPI 1323 (1636)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhcccHHH
Confidence 46677777777777666554322 10110 1111 23457889999999999998888878887
Q ss_pred HhhHHHHHHH-HHHcCCHHHHHHHHHHHHc-cCCCCcchHHHHHH-HHHhcC-ChhHHHHHHHHH
Q 004856 606 ARVWGPLLSA-CKMHSETELAELTAEKLIS-MEPENAGNYVLLSN-IYAAAG-KWNGVAKMRTFL 666 (727)
Q Consensus 606 ~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~-~~~~~g-~~~~a~~~~~~m 666 (727)
..-|-++..+ +.+.|+...+..++++--. -+|.|...|..+.. ++.+-| +.++|..-+-.+
T Consensus 1324 l~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~eay~e~a~l 1388 (1636)
T KOG3616|consen 1324 LDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEAYHEIADL 1388 (1636)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 7788888777 7889999999999887644 46777777765543 333333 555554444333
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=7.7e-06 Score=82.95 Aligned_cols=371 Identities=12% Similarity=0.073 Sum_probs=184.2
Q ss_pred hhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCC-ChhhHHHHHHHhcccCChhHH
Q 004856 175 FYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF-DSGTLINLLRSTVELKSLELG 252 (727)
Q Consensus 175 ~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a 252 (727)
+||....+..++|... +...+.|...-..-...+-+.|++++|+++|+.+.+++..- |...-..++.+-...
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------ 159 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------ 159 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh------
Confidence 3443333666666665 43323333233344456788899999999999998765321 122222222221110
Q ss_pred HHHHHHHHHhcCCCChhHHhHH---HHHhhcCCChHHHHHHHhcC--------CCCCee----------hHHHHHHHHHh
Q 004856 253 RIVHCVAVVSDFCKDLSVNTAL---LSMYSKLASLEDAKMLFDKM--------SDKDRV----------VWNIMISAYYQ 311 (727)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~ 311 (727)
.. ..+......| ..+|..+ ...+...|++.+|+++++.. .+.|.. .---|.-.+-.
T Consensus 160 -~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 -QV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred -hH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 0111111122 2233333 34556789999999998877 221111 11223445667
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhhHHHHH---HHhhcCCChHH--HHHHHHHHHH-----------hCCCCChhHHHHH
Q 004856 312 SGFPKESLELLMCMVRSGFRADLFTAIAAV---SSISTMKNIEW--GKQMHANVLR-----------NGSDYQVSVHNSL 375 (727)
Q Consensus 312 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~--a~~~~~~~~~-----------~g~~~~~~~~~~l 375 (727)
.|+.++|..++....+.. .+|........ .+.....++-. ....++.... ..-.....--+.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988764 34443322222 22222222211 1111111100 0000011111233
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChH
Q 004856 376 IDMYCECEDLNCARKIFDSVKTKT-VVSWSSMIKGYV--THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 452 (727)
+.+| .+..+.+.++-...+... ...+.+++.... +...+.++.+++...-+....-........+......|+++
T Consensus 316 L~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 316 LALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 3333 345566666666666543 233334433322 22246666666666655422222344455556667778888
Q ss_pred HHHHHHH--------HHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCCCH----HHHHHHHHHHHHc
Q 004856 453 HVKYLHG--------YSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI----DSKDI----ITWNSMISAYAKH 516 (727)
Q Consensus 453 ~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~----~~~~~li~~~~~~ 516 (727)
.|..++. .+.+.+..| .+..+++.+|.+.++-+.|..++++... ..+.. .+|.-....-.++
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 8888777 444443333 3445566667777766666666654211 01111 2222233333456
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 77777777777776642 44666666777766664 455555543
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=9.9e-06 Score=83.07 Aligned_cols=419 Identities=10% Similarity=-0.018 Sum_probs=227.8
Q ss_pred hCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHH
Q 004856 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKM 289 (727)
Q Consensus 210 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 289 (727)
..+++...+++.+.+.+ +.+-...|....--.+...|+.++|.......++.+ ..+.+.|..+.-.+....++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 34667777777777766 223333444444444566778888887777777644 3355667766666667777888888
Q ss_pred HHhcCCC---CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC
Q 004856 290 LFDKMSD---KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA-DLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS 365 (727)
Q Consensus 290 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 365 (727)
.|..... .|...|.-+.-.-++.++++...+.-.+..+. .| ....|..+..+.--.|+...|..+.+...+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8876543 35556666666666777777777766666553 33 344566666666677777888888777776642
Q ss_pred -CCChhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004856 366 -DYQVSVHNSLI------DMYCECEDLNCARKIFDSVKTK--TVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435 (727)
Q Consensus 366 -~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 435 (727)
.|+...+.-.. ....+.|.++.|.+.+...... |-. .-......+.+.++.++|..++..++.. .||.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 34444332222 2334567777777766654432 222 2233445567777888888888877765 4666
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH-HHHHhccCCCCCHHHHHHHHHHHH
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG-ELFDEEKIDSKDIITWNSMISAYA 514 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~li~~~~ 514 (727)
.-|.-.+..+. ++-.+.-++. .+|.......|....-.-+--...
T Consensus 253 ~~Yy~~l~~~l----------------------------------gk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 253 LDYYEGLEKAL----------------------------------GKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL 298 (700)
T ss_pred HHHHHHHHHHH----------------------------------HHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh
Confidence 65544443332 1111111111 222222211111000000000001
Q ss_pred H-cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH----HHHHHHHhHHh--c-----C--CCCChh--HHH
Q 004856 515 K-HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE----GRIIFKEMKES--Y-----G--YEPSQE--HYA 578 (727)
Q Consensus 515 ~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~--~-----~--~~p~~~--~~~ 578 (727)
. ..-.+..-+.+..+.++|+++--..+.++ |-.....+- +..+...+... + + -+|... ++-
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 1 11123334455666666655432222222 211111111 11111111100 0 0 134433 334
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 579 SMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
.++..+-+.|+++.|..+++.+ +..|+.+ .|..-...+...|+.++|-..++++.+++-.|...-..-++-..++.+.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 5667777788888888888776 4455544 2333334467777888888888888877765555544566666777788
Q ss_pred hHHHHHHHHHHhCCC
Q 004856 657 NGVAKMRTFLRDRGL 671 (727)
Q Consensus 657 ~~a~~~~~~m~~~~~ 671 (727)
++|.++.......|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 888887777766654
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.96 E-value=6.6e-06 Score=84.34 Aligned_cols=383 Identities=14% Similarity=0.083 Sum_probs=229.7
Q ss_pred cccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCchHHHH
Q 004856 244 VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPKESLE 320 (727)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 320 (727)
-..+++..+....+.+++. .+....+.....-.+...|+.++|....+.-.. ++.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3455666677777777663 222222222222234456788888877766554 356678888877777888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK---T 397 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 397 (727)
.|+..... .||... ++.-|.-.-.+.|+++.....-.... .
T Consensus 97 cy~nAl~~--~~dN~q----------------------------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 97 CYRNALKI--EKDNLQ----------------------------------ILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHHhc--CCCcHH----------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 88887754 344322 12222222223333333333222222 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHhcCCChHHHHHHHHHHHHhCCCchH
Q 004856 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIINIL------PACVNIGALEHVKYLHGYSMKLGLNSLS 470 (727)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (727)
..-..|..++.++.-.|++..|..+.++..+.. -.|+...|.-.. ......|.++.+.+.+...... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 245678888888888999999999988887654 346655553322 2345567777777665443322 11122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHH-HHHHcCChHHHH-HHHHHHHHCCCCCChHHHHHH-HHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS-AYAKHGDWSQCF-KLYTQMKQSDVRPDLITFLGL-LTA 547 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~l-l~~ 547 (727)
..-..-.+.+.+.+++++|..++..+....||...|.-... ++.+-.+.-+++ .+|....+. .|....-..+ ++.
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 22334556788999999999999997766888777665544 443444444555 666666542 2322211111 112
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH----HHHHHHhC-C------------CCCCHhhHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE----ARELVKDM-P------------FKPDARVWG 610 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~ 610 (727)
.......+..-.++..+.++ |+++ ++..+...|-.-...+- +..+...+ + -.|....|.
T Consensus 298 l~~eel~~~vdkyL~~~l~K-g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSK-GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred hCcchhHHHHHHHHHHHhhc-CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 22222334444555666655 6655 33334444432222111 11222222 1 256777777
Q ss_pred HHHHH--HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 611 PLLSA--CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 611 ~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...-+ +-..|+++.|+...+.+++..|.-...|..-+.++.+.|..++|...+++..+-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 76555 8899999999999999999999888889899999999999999999999887653
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-05 Score=84.60 Aligned_cols=433 Identities=15% Similarity=0.055 Sum_probs=230.7
Q ss_pred CCCchhHHHHHHHhhhccCCCChhhhhhh-ccC-CC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhh-H
Q 004856 162 FDSFDDVGDALVEFYIKCDGGFENEKGMI-QRK-FK--DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT-L 236 (727)
Q Consensus 162 ~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~-~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 236 (727)
+..|..+|..|.-....| |+++.+-+. ++. +. .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +
T Consensus 319 ~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345566666666666666 666655554 332 21 2223366666666666666666666665443322233222 2
Q ss_pred HHHHHHhc-ccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhc---
Q 004856 237 INLLRSTV-ELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQS--- 312 (727)
Q Consensus 237 ~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--- 312 (727)
...-+.|. +.+..+++..+-..++...-. +.++ .....|-.+.-+|...
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~--------------~~~~-------------l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGG--------------QRSH-------------LKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhh--------------hhhh-------------hhhhHHHHHHHHHHhHhhc
Confidence 22222332 234444444444444431100 0000 0122222222222211
Q ss_pred --------CCchHHHHHHHHHHHcC-CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 004856 313 --------GFPKESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE 383 (727)
Q Consensus 313 --------g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 383 (727)
....++++.+++..+.+ -.|+...|.++- ++..++++.|.+...+..+.+-..+...|..|.-.+...+
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 12345666666665543 233333333333 3445567777777777777655666666776666677777
Q ss_pred CHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 384 DLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 384 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
++.+|+.+.+...+. |.+....-+..-..-++.++++.....+..- --+...+.. .++-....+....
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~-------~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQ-------TLDEGKLLRLKAG 598 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhh-------hhhhhhhhhhhcc
Confidence 777777766654322 1111111122222356666666655555431 000000000 0000001111110
Q ss_pred HHH--hCCCchHhHHHHHHHHHH---hcCCHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004856 461 SMK--LGLNSLSSVNTAIFISYA---KCGCIEMAGELFDEEKIDSKD------IITWNSMISAYAKHGDWSQCFKLYTQM 529 (727)
Q Consensus 461 ~~~--~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m 529 (727)
+.- ........++..+..... +.-..+.....+...+ .|+ ...|......+.+.++.++|...+.+.
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 000 000111122222211111 1111111111111122 233 245667777888999999999888887
Q ss_pred HHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC
Q 004856 530 KQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARE--LVKDM-PFKP 604 (727)
Q Consensus 530 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p 604 (727)
.. +.| ....|......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .+.|
T Consensus 677 ~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 677 SK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred Hh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 76 445 56677777788888999999999998887 56777 5688899999999998777776 77777 6677
Q ss_pred -CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 605 -DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 605 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
+...|..+...+.+.|+.+.|...|.-+.++++.+|.
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 5678999999999999999999999999999876653
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=7.4e-06 Score=85.79 Aligned_cols=61 Identities=5% Similarity=0.041 Sum_probs=42.6
Q ss_pred CCCCcchHHHHH--HHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHH
Q 004856 92 TSPNSLLYGTIL--KNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVV 158 (727)
Q Consensus 92 ~~~~~~~~n~li--~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (727)
..-|..|-..|+ +-|+.-|+.+.|.+-.+..+. ...|..+.+.|.+..+++.|+-.+..|.
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 334556666666 456777888888877766543 3467788888888888888877776663
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.86 E-value=1.4e-05 Score=75.53 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=191.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhcCCC
Q 004856 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMI---KGYVTHDQSLEALRLFSEMKLEGVEVDFVTI-INILPACVNIGA 450 (727)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~ 450 (727)
|...+...|++..|..-|....+-|+..|-++. ..|...|+..-|+.-|.+.++. +||-..- ..-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 344455566777777777776666665555543 4566677777777777766663 5664322 111234556777
Q ss_pred hHHHHHHHHHHHHhCCCc--hHh------------HHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNS--LSS------------VNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAK 515 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~--~~~------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~ 515 (727)
++.|..=|+.+++..... ... .....+..+.-.|+...|++....+....| |...+..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 777777777666643211 111 111223345567888888888888665555 77788888889999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh----HHHHH---H------H
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE----HYASM---V------N 582 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i------~ 582 (727)
.|++..|+.=++..-+.. .-|..++.-+...+...|+.+.++...++.. .+.||-. .|..| + .
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999988777766532 3355666677777888888888888877776 4567633 22221 1 1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH--hhHH---HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 583 LLGRAGHMDEARELVKDM-PFKPDA--RVWG---PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
...+.++|.++.+-.++. ...|.. +.++ .+-..+...+++.+|++.+.++++.+|+|..++..-+.+|.-..++
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 233456666666666554 445542 2333 3334466788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 004856 657 NGVAKMRTFLRDR 669 (727)
Q Consensus 657 ~~a~~~~~~m~~~ 669 (727)
++|+.-++...+.
T Consensus 358 D~AI~dye~A~e~ 370 (504)
T KOG0624|consen 358 DDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887665
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=2.8e-05 Score=83.61 Aligned_cols=454 Identities=10% Similarity=0.019 Sum_probs=242.9
Q ss_pred CCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHH--HhcccCChhHHHHHHHHHHHhcCCCChhH
Q 004856 193 KFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR--STVELKSLELGRIVHCVAVVSDFCKDLSV 270 (727)
Q Consensus 193 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 270 (727)
....|..+|..+..+|.+.|++..|+++|.+... +.|+. +|...-. .-+..|...++...++.++..- ..-...
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~ 666 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTG 666 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHh
Confidence 4456777788888888888888888888887765 34543 2322222 2356678888888777776532 011111
Q ss_pred HhHHHHHhh-------cCCChHHHHHHHhcCCC-----------CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 004856 271 NTALLSMYS-------KLASLEDAKMLFDKMSD-----------KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRA 332 (727)
Q Consensus 271 ~~~li~~~~-------~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 332 (727)
.+.+...+. -.|-...|...|++-.+ .+...|-.+ ..|..+|-+.. .+ .|
T Consensus 667 q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~v 734 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IV 734 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-ch
Confidence 122222222 22223333333332211 111222221 23334444433 11 33
Q ss_pred ChhhHHHHHHHhhcCCCh---H---HHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cC----CHHHHHHHHhcCC--
Q 004856 333 DLFTAIAAVSSISTMKNI---E---WGKQMHANVLRNGSDYQVSVHNSLIDMYCE----CE----DLNCARKIFDSVK-- 396 (727)
Q Consensus 333 ~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g----~~~~A~~~~~~~~-- 396 (727)
+......+..-.-..+.. + .|-+.+- ....+..+...|..|+.-|.+ +| +...|...+....
T Consensus 735 n~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L 812 (1238)
T KOG1127|consen 735 NMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL 812 (1238)
T ss_pred HHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 333333333322223322 1 0111110 111122223444444443333 22 2345666665543
Q ss_pred -CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 397 -TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 397 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
..+...||.|.-. ...|.+.-|...|-+-.... +....+|..+--.|....+++.|...+....... +.+...+-.
T Consensus 813 ~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG 889 (1238)
T KOG1127|consen 813 CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLG 889 (1238)
T ss_pred hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHH
Confidence 3467788887665 55566666666665544431 3345677777777888889999998888777654 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHh-----ccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---------CCCCCChHH
Q 004856 476 IFISYAKCGCIEMAGELFDE-----EKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ---------SDVRPDLIT 540 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~-----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~t 540 (727)
........|+.-++..+|.. +... -|+..-|-+...-...+|+.++-+...+++-. .|.+-+...
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fA 969 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFA 969 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHH
Confidence 44444567777777777775 2211 35555565555555667766655544433321 123335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA----SMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSAC 616 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 616 (727)
|........+.+.+.+|.+...+...-...+-+...|+ ...+.++..|.++.|..-+......-+..+..+-+..
T Consensus 970 y~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l- 1048 (1238)
T KOG1127|consen 970 YAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL- 1048 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-
Confidence 88888877888888777777666542211233444444 3445566678888777766655434344443333333
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 617 KMHSETELAELTAEKLISMEPENAG---NYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.-.++++++...|++++.+-..+.. ....++......+.-+.|...+-+...
T Consensus 1049 Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1049 FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 3467899999999999986544333 233445556666777777776555443
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=1.4e-06 Score=91.45 Aligned_cols=261 Identities=11% Similarity=0.064 Sum_probs=145.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHH
Q 004856 377 DMYCECEDLNCARKIFDSVKTK--TVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEH 453 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 453 (727)
..+...|++++|.+.++.-... |.. ........+.+.|+.++|..+|+.+.+. .|+...|...+..|.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc---
Confidence 3456677888887777664432 333 3445566677777778888887777775 4666655444443331000
Q ss_pred HHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHC
Q 004856 454 VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW-SQCFKLYTQMKQS 532 (727)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 532 (727)
+ ......+...++++++....|.......+.-.+.....+ ..+...+..+..+
T Consensus 87 -----------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 87 -----------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred -----------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 000122333333333322223222221111111111112 2344455666666
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-------------CCCCChh--HHHHHHHHHHhcCCHHHHHHHH
Q 004856 533 DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY-------------GYEPSQE--HYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 533 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~ 597 (727)
|+++ +|+.|-..|......+-...++....... .-+|+.. ++..+...|...|++++|++++
T Consensus 141 gvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 141 GVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred CCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6543 34444444444444444444444433220 0123332 3455667777888888888888
Q ss_pred HhC-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 598 KDM-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 598 ~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
++. ...|+. ..|..-...+.+.|++++|...++.+.++++.|.-.-.-.+..+.+.|+.++|.+++......+.
T Consensus 218 d~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 218 DKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 866 556653 35555555688888888888888888888887777777777788888888888888877655543
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=3.7e-07 Score=89.29 Aligned_cols=147 Identities=13% Similarity=0.141 Sum_probs=92.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hcC
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG----RAG 588 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g 588 (727)
+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...|..++. -.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCch
Confidence 34456677776665431 3445555666677777777777777777663 33332 2222333222 223
Q ss_pred CHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh-hHHHHHHHH
Q 004856 589 HMDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW-NGVAKMRTF 665 (727)
Q Consensus 589 ~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 665 (727)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 577777777777 23456666777777788888888888888888888888888888888888888887 556677777
Q ss_pred HHhC
Q 004856 666 LRDR 669 (727)
Q Consensus 666 m~~~ 669 (727)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6654
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=3.1e-05 Score=73.44 Aligned_cols=441 Identities=12% Similarity=0.038 Sum_probs=217.0
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (727)
+.-+..+.++..|..+++.-...+-.-...+-.-+..++-+.|++++|...+..+.... .++..++-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455667777777777665433211111111223333456677777777777666533 33444444444444445666
Q ss_pred HHHHHHHhcCCCCCeehHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 004856 285 EDAKMLFDKMSDKDRVVWNIM-ISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN 363 (727)
Q Consensus 285 ~~A~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (727)
.+|..+-.+.++ ....+.| ...-.+.++-++-..+-+.+.+. ...-.++....-....+++|.+++..++..
T Consensus 108 ~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666555432 2222222 22223334433333333333221 011111222222222345555555544433
Q ss_pred CCCCChhHHHH-HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004856 364 GSDYQVSVHNS-LIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439 (727)
Q Consensus 364 g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 439 (727)
. |+-...|. +.-+|.+..-++-+.++++--. ...++.-|.......+.=....|.+-.+++.+.+-+. |-
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~ 254 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP 254 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch
Confidence 2 11111111 1123444444444433332211 1122333333332222211122222222322221100 10
Q ss_pred HHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 004856 440 NILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK 515 (727)
Q Consensus 440 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 515 (727)
-.-..|.+ -.+-+.|.+++--+.+. .| ..--.|+-.|.+.+++.+|..+...+....|-......+ .++.
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgv--v~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGV--VFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHH--HHHH
Confidence 00001111 11224444443332221 12 222345556899999999999999887333333322222 2333
Q ss_pred cC-------ChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 516 HG-------DWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 516 ~g-------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
.| ...-|.+.|.-.-+.+..-|.. ---++.+++.-..++++.+.+++.+..- +..|...--.+..+++..
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHh
Confidence 33 2344555555444444443322 2334555666667889999999888753 333444444578999999
Q ss_pred CCHHHHHHHHHhCC-CC-CCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccC-CCCc-chHHHHHHHHHhcCChhHHHHH
Q 004856 588 GHMDEARELVKDMP-FK-PDARVWGPLLSA-CKMHSETELAELTAEKLISME-PENA-GNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 588 g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
|++.+|+++|-..+ -+ .|..+|.+++.- |.+.+..+.|-.++ ++.+ |.+. .....+++.|.+.+.+--|.+.
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998883 11 367788887776 66777877776554 4433 3222 3344667889999999888888
Q ss_pred HHHHHhCC
Q 004856 663 RTFLRDRG 670 (727)
Q Consensus 663 ~~~m~~~~ 670 (727)
|+.+....
T Consensus 484 Fd~lE~lD 491 (557)
T KOG3785|consen 484 FDELEILD 491 (557)
T ss_pred hhHHHccC
Confidence 88776554
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=2.5e-06 Score=76.35 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=98.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 547 (727)
..++..+...|-+.|..+.|.+.|++.....| +....|....-+|..|++++|...|++....---| -..||..+.-+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 34444555556666666666666665333233 44556666666667777777777777666532222 24566666666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
..+.|+.+.|..+|++..+. .|+ ......+.+...+.|++..|..+++.. ...+...+....+..-...||.+.
T Consensus 149 al~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 66777777777777766643 333 345566666666777777777776665 222444444444455566677666
Q ss_pred HHHHHHHHHccCCCC
Q 004856 625 AELTAEKLISMEPEN 639 (727)
Q Consensus 625 A~~~~~~~~~~~p~~ 639 (727)
+-+.-.++....|..
T Consensus 226 a~~Y~~qL~r~fP~s 240 (250)
T COG3063 226 AQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHHhCCCc
Confidence 666666666666643
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.6e-07 Score=94.66 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=157.7
Q ss_pred cCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHH
Q 004856 447 NIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+.+..+..| |....-+|...|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444444444444444443 34555555565666666666667777766444444 667777888888888888888888
Q ss_pred HHHHHHCCCCCChHHHHHHH-----------HHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 526 YTQMKQSDVRPDLITFLGLL-----------TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594 (727)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 594 (727)
+++-+... |.. ..+. ..+.....+....++|-++....+..+|..++..|.-.|.-.|++++|.
T Consensus 376 L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 88776532 110 0000 1122223345556666666655466688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 595 ELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 595 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.|+.+ ..+| |...||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.+=.....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999988 7778 56689999999999999999999999999999999999999999999999999999988765443
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=5.6e-06 Score=87.09 Aligned_cols=249 Identities=12% Similarity=0.138 Sum_probs=156.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---hHHHHHHHHHHhc----
Q 004856 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV---VSWSSMIKGYVTH---- 413 (727)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~---- 413 (727)
...+...|++++|.+.+..-.+. +.....+.......+.+.|+.++|..+|..+.++|+ .-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34567889999999998764433 344456677888999999999999999999987644 3455555555222
Q ss_pred -CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 414 -DQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 414 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
...+...++|+++...- |.......+.-.+.....+ ..+..+.....+.|+|+ +++.|-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677888999887763 5544444443333332233 33455666677778654 45555555665555555555
Q ss_pred HHHhcc----------------CCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcC
Q 004856 492 LFDEEK----------------IDSKDIITWN--SMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAG 552 (727)
Q Consensus 492 ~~~~~~----------------~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g 552 (727)
++.... ...|....|. -+...|...|++++|++.+++.++. .|+ ...|..-...+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 554421 0123343443 3355566777777777777777763 464 445666677777777
Q ss_pred CHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 553 LVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
++.+|.+.++..+. +++ |...-+-.+..+.|+|+.++|.+.+...
T Consensus 243 ~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 243 DLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred CHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 77777777777663 233 3334445556666777777777776655
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.4e-05 Score=73.94 Aligned_cols=415 Identities=11% Similarity=0.081 Sum_probs=207.3
Q ss_pred CCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC--CeehHHH-
Q 004856 228 GAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--DRVVWNI- 304 (727)
Q Consensus 228 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~- 304 (727)
|+..-.--|.+++..+.+..++..+.+++..-.+.. +.+....+.|...|-...++..|-..++++... ...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444444456666666666667777766666555443 224444555666666666777777777666542 2112211
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHh--hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 004856 305 MISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI--STMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCEC 382 (727)
Q Consensus 305 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 382 (727)
-...+-+.+.+.+|+.+...|.+. |+...-..-+.+. -+.+++..++.+.++.... .+..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 123445566667777766666432 2221111111111 2344555555544433211 1233333333444556
Q ss_pred CCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhcCCChHHH
Q 004856 383 EDLNCARKIFDSVKTK----TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI----INILPACVNIGALEHV 454 (727)
Q Consensus 383 g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a 454 (727)
|+++.|.+-|+...+- ....||.-+. ..+.|+++.|++...++.++|++..+..= .-.+.+ ...|+.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt--- 232 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT--- 232 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---
Confidence 6666666666554432 2234443332 33455666666666666666554211100 000000 000000
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
..++. ..-+..+|.-...+.+.|+++.|.+.+..|+.. ..|.++...+.-. -..+++.+..+-+.-+.+
T Consensus 233 ~~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence 00000 001122333334467889999999999998743 3466666554322 234556666666666666
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHhh
Q 004856 532 SDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY-EPSQEHYASMVNLLGR-AGHMDEARELVKDMPFKPDARV 608 (727)
Q Consensus 532 ~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~ 608 (727)
. .| ...||..++-.||+..-++.|-.++.+-... .+ -.+...|+ |++++.. .-..++|.+-++.....-....
T Consensus 305 ~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 305 Q--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred c--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 45 5679999999999998888888776542211 01 11233333 4444443 3467777766665421100011
Q ss_pred HHHHHHH-HHHcCCHHH----HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 609 WGPLLSA-CKMHSETEL----AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 609 ~~~ll~~-~~~~g~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
-..-+.. -.++.+-++ ++.-++..+++- -.+....++.|+...++..+.+.|+.-.+.
T Consensus 381 RklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 381 RKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111 122222222 233344443321 124446678899999999999999865443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=3.5e-05 Score=79.68 Aligned_cols=295 Identities=11% Similarity=0.003 Sum_probs=169.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH---H
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVK---TKTVV---SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFV-TIIN---I 441 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---l 441 (727)
+..+...+...|+.+.+.+.+.... ..+.. ........+...|++++|.+.+++..+. .|+.. .+.. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHH
Confidence 3444444555555555444443322 11211 1222233456678888888888887765 34332 3221 1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCc-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCh
Q 004856 442 LPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDW 519 (727)
Q Consensus 442 l~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 519 (727)
.......+..+.+.+.+.. .....| .......+...+...|++++|...+++.....| +...+..+...|...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 1111223444444444433 112222 233444556678889999999999998554444 456777888888999999
Q ss_pred HHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHHHH
Q 004856 520 SQCFKLYTQMKQSDV-RPDL--ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY-A--SMVNLLGRAGHMDEA 593 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A 593 (727)
++|+..+++.....- .|+. ..|..+...+...|++++|..+++.........+..... + .+..-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998876421 1232 245567788889999999999998876331111222111 1 233333444533333
Q ss_pred HHH---HHhC-CCCC-CHhhH--HHHHHHHHHcCCHHHHHHHHHHHHccCCC---------CcchHHHHHHHHHhcCChh
Q 004856 594 REL---VKDM-PFKP-DARVW--GPLLSACKMHSETELAELTAEKLISMEPE---------NAGNYVLLSNIYAAAGKWN 657 (727)
Q Consensus 594 ~~~---~~~~-~~~p-~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~ 657 (727)
.++ .... +..| ....+ .....++...|+.+.|...++.+....-. ........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 1111 1101 11222 24455578889999999999887663211 2344456677788999999
Q ss_pred HHHHHHHHHHhCC
Q 004856 658 GVAKMRTFLRDRG 670 (727)
Q Consensus 658 ~a~~~~~~m~~~~ 670 (727)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876653
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3e-08 Score=61.16 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=28.9
Q ss_pred hcCCCchhhHHHHHHHHHccCChhHHHHHHhcCC
Q 004856 59 HGLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT 92 (727)
Q Consensus 59 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 92 (727)
.|+.||.++||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888888888888888888888888888884
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.9e-05 Score=78.21 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=73.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 581 VNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
...+.+.|++..|+..+.++ ...|+ ...|.....+|.+.|++..|..-.+..++++|+....|..-+-++....+|+.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999888 45564 45666666668899999999999999999999888899988888999999999
Q ss_pred HHHHHHHHHhC
Q 004856 659 VAKMRTFLRDR 669 (727)
Q Consensus 659 a~~~~~~m~~~ 669 (727)
|.+.+++..+.
T Consensus 445 Aleay~eale~ 455 (539)
T KOG0548|consen 445 ALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhc
Confidence 99998877665
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=2.2e-06 Score=83.84 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=91.0
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCC
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGL 553 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~ 553 (727)
.+|...|++++|.+++..- .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 3455566777666666542 24455555667777777777777777777762 333 333344444332 235
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCH-HHHHHHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSET-ELAELTAE 630 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~A~~~~~ 630 (727)
+.+|..+|+++.++ ..+++.+.+.+..++...|++++|.+++.+. ...| ++.+.-.++......|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77777777777653 4566677777777777777777777777765 3334 333444555555566655 56667777
Q ss_pred HHHccCCCCc
Q 004856 631 KLISMEPENA 640 (727)
Q Consensus 631 ~~~~~~p~~~ 640 (727)
++....|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 7777777544
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=0.00016 Score=72.97 Aligned_cols=433 Identities=12% Similarity=0.028 Sum_probs=245.0
Q ss_pred HHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCC-hhHHhHHHHHhhcCCCh
Q 004856 206 SLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKD-LSVNTALLSMYSKLASL 284 (727)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 284 (727)
.+.+..|+++.|+.+|.+..... ++|.+-|..-..+++..|++++|.+=-...++.. |+ ..-|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 45667899999999998887754 3477778888888888898888877666655543 43 45677777777778888
Q ss_pred HHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHH-HHHHHHH-HHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 004856 285 EDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKES-LELLMCM-VRSGFRADLFTAIAAVSSISTMKNIEWGKQMHAN 359 (727)
Q Consensus 285 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 359 (727)
++|+.-|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-+..|- .......+..-.+.+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~-----~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTN-----YSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhh-----hhhccHHHHHHHHHhhc
Confidence 8888888876553 444555565555 11111 1111100 000111122111 11111111111111110
Q ss_pred HHH-hCCCC-ChhHHHHHHHHHHhcCCH-HHHHHH--H-------hcCCCC-----C----------hhHHHHHHHHHHh
Q 004856 360 VLR-NGSDY-QVSVHNSLIDMYCECEDL-NCARKI--F-------DSVKTK-----T----------VVSWSSMIKGYVT 412 (727)
Q Consensus 360 ~~~-~g~~~-~~~~~~~li~~~~~~g~~-~~A~~~--~-------~~~~~~-----~----------~~~~~~li~~~~~ 412 (727)
-.. .+... |..+..++.... ..+.. ..+... . ..+..+ | ..-...+.++..+
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLK-GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHh-cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 000 00000 111111111100 00000 000000 0 000000 0 0124456777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc------hHhHHHHHHHHHHhcCCH
Q 004856 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS------LSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 486 (727)
..+++.|++-+....+.. -+..-++..-.++...|.............+.|-.. -......+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 888888888888887753 333334555556777777766666655555444221 111222234477778888
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+.|...|.+......+.. ...+....++++...+...- +.|... -...-...+.+.|++..|...|.+++
T Consensus 315 ~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred HHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 889888887432122211 12233445566665555544 445432 22233677888999999999999998
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
.+ .+-|...|..-.-+|.+.|.+..|++-.+.. ...|+.. .|.--..++....+++.|...|++.++.+|.+....
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 75 2445778999999999999999998877666 4555543 444444456677799999999999999999888887
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 004856 644 VLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 644 ~~l~~~~~~~g~~~~a~~~~~ 664 (727)
..+.+++......+...++.+
T Consensus 464 ~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 464 DGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHhhcCCCHHHHHH
Confidence 777777665433333344433
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=2.8e-05 Score=83.56 Aligned_cols=380 Identities=14% Similarity=0.036 Sum_probs=223.0
Q ss_pred hhHHhHHHHHhhcCCChHHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh--hhHHHHHH
Q 004856 268 LSVNTALLSMYSKLASLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADL--FTAIAAVS 342 (727)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~ 342 (727)
...|..|...|+...+...|.+.|++.-+- |..++......|++..+++.|..+.-..-+.. +.-. ..|..+--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 456888888888888889999999987653 67788889999999999999998833222111 1111 11222223
Q ss_pred HhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH---HHHHHHhcCChHHH
Q 004856 343 SISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS---MIKGYVTHDQSLEA 419 (727)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A 419 (727)
.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-. ....-+..|++.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3445666777776666666554 4567788899999999999999999998776655543322 12234567888888
Q ss_pred HHHHHHHHHC------CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHH-------HHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 420 LRLFSEMKLE------GVEVDFVTIINILPACVNIGALEHVKYLHGYS-------MKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 420 ~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
+..+...... +..--..++......+...|-..++..+++.. .......+...+-.+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------- 719 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------
Confidence 8888776542 11111223333333333333333333333222 222211122222111
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCChHHHHHHHHHHHh----c----C
Q 004856 487 EMAGELFDEEKIDSKDIITWNSMISAYAKHGDW---S---QCFKLYTQMKQSDVRPDLITFLGLLTACVN----A----G 552 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~----g 552 (727)
.+|..+|-......|+......+..-+-..+.. + -+.+.+-.-.. +..+..+|..|+..|.+ . .
T Consensus 720 sdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 720 SDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence 233344443331122222222222212222222 1 11111111111 12234455555444333 1 2
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+...|...+....+. ..+ ...|+.|.- +.-.|++.-|.-.|-+. ...| ...+|..+...|.+..|++-|...+
T Consensus 798 ~~~~Ai~c~KkaV~L---~ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSL---CANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred hHHHHHHHHHHHHHH---hhccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 234677777777643 344 445555544 46668888888887766 2334 5568888888899999999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
.++..++|.|...+.-.+.+....|+.-++..+|..
T Consensus 874 ~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999888888888988888888876
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=5.2e-06 Score=80.04 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=119.0
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI---- 539 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 539 (727)
.....+..+...+.+.|++++|...|+++....|+. ..|..+..++...|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 344556666667777888888888887754434432 35666777777888888888888888763 34321
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHH
Q 004856 540 TFLGLLTACVNA--------GLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG 610 (727)
Q Consensus 540 t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 610 (727)
++..+..++... |+.++|.+.++.+... .|+. ..+..+.... ...... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~---~--------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL---A--------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH---H--------HHHH
Confidence 345555555544 6677777777777754 3332 2222221110 000000 0 0112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+...+...|++++|+..++++++..|++ +.++..++.++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455889999999999999999987754 468889999999999999999999888765
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=0.00037 Score=66.21 Aligned_cols=315 Identities=13% Similarity=0.049 Sum_probs=180.7
Q ss_pred ehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH---HHhhcCCChHHHHHHHHHHHHhCCCCChhH-HHHH
Q 004856 300 VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAV---SSISTMKNIEWGKQMHANVLRNGSDYQVSV-HNSL 375 (727)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l 375 (727)
.-.--+...+...|++..|+..|....+. |...|.++. ..|...|....|..=+..+++. +||-.. ..--
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 33445667777888888888888877643 444444444 3455667666666666666554 444321 1112
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHH
Q 004856 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK 455 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 455 (727)
...+.+.|.+++|..=|+.+.+.++.- +....++.+.-..++-. .....+..+...|+...+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHH
Confidence 234567777777777777665433210 00000000000001111 1112223334455555565
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004856 456 YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534 (727)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (727)
.....+++.. +.+...+..-..+|...|++..|..-+...... .-+...+--+-..+...|+.+.++...++.++ +
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 5555555543 456666666666677777777776666554322 23444555555666667777777777777666 4
Q ss_pred CCChHH----HHHH---------HHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHH
Q 004856 535 RPDLIT----FLGL---------LTACVNAGLVEEGRIIFKEMKESYGYEPSQ-----EHYASMVNLLGRAGHMDEAREL 596 (727)
Q Consensus 535 ~p~~~t----~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~ 596 (727)
.||... |..| +......++|.++++..+...+. .|.. ..+..+-.++...|++.+|++.
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 566432 1111 11233456777777777766643 4441 2233445566677888999888
Q ss_pred HHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 597 VKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 597 ~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
..+. .+.|| ..++.--..+|.-..+++.|+.-|+++.+.++++..+-
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 8776 66776 55666667778888889999999999999888765443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00015 Score=85.39 Aligned_cols=324 Identities=10% Similarity=-0.006 Sum_probs=177.8
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCC---h-----hHHHHHHHHHHhc
Q 004856 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK----TKT---V-----VSWSSMIKGYVTH 413 (727)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~---~-----~~~~~li~~~~~~ 413 (727)
..|+++.....+..+.......+..........+...|++++|...+.... ..+ . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 445555555554443111111122222333444556677777776665432 111 1 1112223445567
Q ss_pred CChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-chHhHHHHHHHHHHhcC
Q 004856 414 DQSLEALRLFSEMKLEGVEVDF----VTIINILPACVNIGALEHVKYLHGYSMKL----GLN-SLSSVNTAIFISYAKCG 484 (727)
Q Consensus 414 g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 484 (727)
|++++|...+++....-...+. .....+...+...|+++.|...+...... |-. ........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 8888888888776653111121 22334444566778888887777666542 111 11234445566677788
Q ss_pred CHHHHHHHHHhccCC-----C---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC--hHHHHHHHHHHHhc
Q 004856 485 CIEMAGELFDEEKID-----S---K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD--VRPD--LITFLGLLTACVNA 551 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~~~~~~ 551 (727)
++++|...+++.... . + ....+..+...+...|++++|...+.+..... ..+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 888888877652110 1 1 12234445556667788888888887765421 1121 23444456667778
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHh----hHHHHHHHHHHcC
Q 004856 552 GLVEEGRIIFKEMKESYGYEPSQEHY-----ASMVNLLGRAGHMDEARELVKDMPFK--PDAR----VWGPLLSACKMHS 620 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~ll~~~~~~g 620 (727)
|+.++|...++..............+ ...+..+...|+.+.|.+++...... .... .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 88888888887765421111110111 11123345578888888887765211 1111 1234444577788
Q ss_pred CHHHHHHHHHHHHccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 621 ETELAELTAEKLISMEP------ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++|...++++.+... ....++..++.++...|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888876421 12235667777888888888888888877654
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00017 Score=74.58 Aligned_cols=269 Identities=9% Similarity=0.010 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHH-HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHH---
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFVTIIN-ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT--- 474 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 474 (727)
...|..+...+...|+.+++...+.+..... ..++...... ....+...|+++++..+++...+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456667777777888888777777665432 1233322222 2234567899999999999888764 33444443
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.........|..+.+.+.+.......|+ ...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222223356667777777653332343 3445566678889999999999999999853 3356778888999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHH------HHHHHHHHcCCHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQ--EHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWG------PLLSACKMHSETEL 624 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~ll~~~~~~g~~~~ 624 (727)
+++|..++++........|+. ..|..+...+...|++++|..++++. ...|....+. .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988642222332 34667889999999999999999987 2233111111 22233445554443
Q ss_pred HHHH---HHHHHccCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 625 AELT---AEKLISMEPENA--GNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 625 A~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
+.+. ........|... ..-...+.++...|++++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3333 222111112211 222366778899999999999999887653
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.3e-05 Score=72.60 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=111.8
Q ss_pred hcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
..+++..+..+.++.++ +.+..+.+.......+.|+++.|++-|+...+-+---....|+..+.- .+.|+++.|+++.
T Consensus 124 se~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHH
Confidence 34566666666666553 233333333444445667777777777766653322234455544433 3446777777777
Q ss_pred HHhHHhcCCC-------------CCh--------hHHHHHHH-------HHHhcCCHHHHHHHHHhCC----CCCCHhhH
Q 004856 562 KEMKESYGYE-------------PSQ--------EHYASMVN-------LLGRAGHMDEARELVKDMP----FKPDARVW 609 (727)
Q Consensus 562 ~~~~~~~~~~-------------p~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~~~----~~p~~~~~ 609 (727)
.++.++ |++ ||+ -+-+.++. .+.+.|+++.|.+.+..|+ ..-|++|.
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 776665 442 111 11223333 3567899999999999994 33466665
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 610 GPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 610 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
..+.- --..++.....+-+.-+++++|-.+.++..+..+|++..-++-|..++-+
T Consensus 281 HN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 54432 22445566666777778888987789999999999999999888887653
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=2.4e-06 Score=74.43 Aligned_cols=123 Identities=15% Similarity=0.006 Sum_probs=89.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF 602 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 602 (727)
.++++..+ +.|+. +..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 34553 445667777888888888888887743 2334667778888888888888888888877 44
Q ss_pred CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 603 KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 603 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
.| +...|..+..++...|+.++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 55 455677777778888888888888888888888888888777665543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.00034 Score=82.29 Aligned_cols=363 Identities=9% Similarity=-0.029 Sum_probs=218.6
Q ss_pred HHHhhcCCChHHHHHHHhcCCCCCeeh--HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHH
Q 004856 275 LSMYSKLASLEDAKMLFDKMSDKDRVV--WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEW 352 (727)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 352 (727)
...|...|++.+|..........+... ...........|++..+...+..+.......+..........+...+++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555666666666555554432111 111223344567777766666655221111122222333444557788999
Q ss_pred HHHHHHHHHHhCC------CCC--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----hHHHHHHHHHHhcCCh
Q 004856 353 GKQMHANVLRNGS------DYQ--VSVHNSLIDMYCECEDLNCARKIFDSVKT----KTV----VSWSSMIKGYVTHDQS 416 (727)
Q Consensus 353 a~~~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~ 416 (727)
+...+....+.-- .+. ......+...+...|++++|...++.... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9888887755311 111 11222334456678999999988876432 222 3455666777889999
Q ss_pred HHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC--c-hHhHHHHHHHHHHhcC
Q 004856 417 LEALRLFSEMKLEGV---EV--DFVTIINILPACVNIGALEHVKYLHGYSMKL----GLN--S-LSSVNTAIFISYAKCG 484 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g 484 (727)
++|...+.+.....- .+ ...++..+...+...|+++.|...+...... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988764211 11 1234455566788899999999988776552 221 1 2334455666777889
Q ss_pred CHHHHHHHHHhccCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChHHH-----HHHHHHHHhcC
Q 004856 485 CIEMAGELFDEEKID----SK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR-PDLITF-----LGLLTACVNAG 552 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~~~~~~g 552 (727)
++++|...+.+.... .+ ....+..+...+...|++++|.+.+.+.....-. .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999998874211 12 1334455666788999999999999887542101 111111 11224445578
Q ss_pred CHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCH-hhHHHHHHHHHHcCC
Q 004856 553 LVEEGRIIFKEMKESYGYEPS---QEHYASMVNLLGRAGHMDEARELVKDM-------PFKPDA-RVWGPLLSACKMHSE 621 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~ 621 (727)
+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++. .+...+..++...|+
T Consensus 668 ~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999887765432 11111 111346777888999999999998876 222222 234444455899999
Q ss_pred HHHHHHHHHHHHccCCC
Q 004856 622 TELAELTAEKLISMEPE 638 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~ 638 (727)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987643
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=1.1e-05 Score=89.36 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=154.5
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccC-CC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKI-DS-----KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT 540 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (727)
+.....|-..|......+++++|++++++... .. --...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44455666667777788888888888887332 11 12457888888877888888888888888773 223455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD---ARVWGPLLSAC 616 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 616 (727)
|..|...|.+.+..++|.++++.|.++++ -...+|..+++.+.+..+-+.|..++.++ ..-|. .....-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888888888999999999999988755 56678888888888888888888888876 33343 33444555556
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
.++|+.+.+..+|+..+.-.|.....|..++++-.+.|+.+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78889999999999988888888888999999988999999999999988887663
No 110
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=5e-05 Score=75.39 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=118.3
Q ss_pred HHhcC-CHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCH
Q 004856 480 YAKCG-CIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDW--SQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLV 554 (727)
Q Consensus 480 ~~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 554 (727)
+.+.| ++++++..++++.... .+..+|+.....+.+.|+. ++++.+++++.+. .| |..+|.....++...|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhH
Confidence 33444 4567777776644333 3556777665555566653 6778888888874 45 677888888888888999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc----CC
Q 004856 555 EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA---GH----MDEARELVKDM-PFKP-DARVWGPLLSACKMH----SE 621 (727)
Q Consensus 555 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~ 621 (727)
+++++.++++.+. . .-|...|+.....+.+. |. .+++.++..++ ...| |...|+-+.+.+... ++
T Consensus 159 ~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 159 EDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 9999999988865 2 33455666655555443 22 24566666444 5566 556888888887763 34
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
..+|...+.++.+.+|.++.+...|+++|...
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 56788999999888999999999999999864
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1.1e-05 Score=74.39 Aligned_cols=118 Identities=10% Similarity=0.114 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHHcCC--HHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA-CKMHSE--TELA 625 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~A 625 (727)
.++.+++...++...+. -+.+...|..|...|...|++++|...+++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666665543 2445667777777777777777777777776 4455 33455555554 355565 4778
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.++++++++.+|++..++..++..+...|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888777788888888888888888888887776653
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=2e-05 Score=72.27 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 586 (727)
..+-..+...|+-+....+..+..... +-|......++......|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 334455555666666655555543311 11333344456666666666666666666654 345556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 004856 587 AGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 663 (727)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....+.|..+-..|..+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666655 3333 33455555555666666666666666666666656666666666666666666666554
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.3e-07 Score=57.27 Aligned_cols=33 Identities=36% Similarity=0.634 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 004856 364 GSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396 (727)
Q Consensus 364 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (727)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777778888888888888888888887774
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=1.6e-05 Score=87.01 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYAS 579 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 579 (727)
++..+-.|.....+.|++++|+.+++...+ +.|+ ......+..++.+.+++++|...+++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 467777788888888888888888888888 5675 456777788888888888888888888753 454 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+..++.+.|++++|..+|++. ...|+ ...|..+..++...|+.++|...|+++++...+-...|..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 788888888888888888887 23443 56777777888888888888888888888765444454433
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=4.4e-06 Score=72.86 Aligned_cols=107 Identities=11% Similarity=-0.045 Sum_probs=91.3
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555553 3455 3556788899999999999999988 5566 56678888888999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 637 PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 637 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
|+++.++..++.++...|+.++|+..++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999887653
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=6.7e-05 Score=76.32 Aligned_cols=215 Identities=13% Similarity=0.134 Sum_probs=131.9
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHH
Q 004856 346 TMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRL 422 (727)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 422 (727)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+- |....-+|.-.|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555443 334455666666666666666666666655443 445555666677777777777777
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHHHhcCCChHHHHHH-HHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 423 FSEMKLEGVE--------VDFVTIINILPACVNIGALEHVKYL-HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 423 ~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
|+.-+....+ ++...-.. ........+....++ ++.....+..+|+.++..|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776543210 00000000 011111122333333 444445565577777788877788888888888888
Q ss_pred HhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 494 DEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 494 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
+.....+| |...||.|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|.+.|-.+.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 87554455 667888888888888888888888888887 67863 345556667888888888887776554
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=1.6e-05 Score=82.87 Aligned_cols=214 Identities=10% Similarity=0.044 Sum_probs=149.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCh
Q 004856 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDW 519 (727)
Q Consensus 440 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 519 (727)
.+...+...|-...|..++.... .+...+..|...|+..+|..+..+..+.+||...|..+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 34445556666666666665442 344566677777777777777766444466777777777666666666
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
++|.++++..-.. .-..+.......++++++.+.|+.-.+. -+....+|-.+.-+..+.+++..|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 7777776654332 1111111122357777777777766543 122356777777788888999999998887
Q ss_pred C-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 600 M-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 600 ~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
. ...||. ..||.+-.+|.+.++..+|...++++++-+-++...+.+..-+..+.|.|++|.+.+.++.+...
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7 667765 58999999999999999999999999998877778888888888999999999999998876543
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=0.00012 Score=81.55 Aligned_cols=233 Identities=12% Similarity=0.147 Sum_probs=169.6
Q ss_pred CC-HHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCC---chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHH
Q 004856 433 VD-FVTIINILPACVNIGALEHVKYLHGYSMKL-GLN---SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507 (727)
Q Consensus 433 p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (727)
|| ...|...|.-..+.++.++|+++.+++.+. ++. --..+|.+++++-.--|.-+...++|++.....-....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44 456667777777888888888887776652 221 2234677777777777888888999998775333356788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLG 585 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~ 585 (727)
.|...|.+.+.+++|-++++.|.++ +.-....|...+..+.+..+-+.|..++.++.+. ++. -.......+.+-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999876 4556678888999999998889999999988853 322 2445556667778
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCcchHH-HHHHHHHhcCChhHHH
Q 004856 586 RAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME--PENAGNYV-LLSNIYAAAGKWNGVA 660 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~-~l~~~~~~~g~~~~a~ 660 (727)
+.|+.+.+..+|+.. .-.| ....|+.++..-.++|+.+.+..+|++++.+. |.....+. ..+..-.+.|+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 899999999999887 2233 45689999999999999999999999999854 44444333 4444444446665555
Q ss_pred HHHHHHHh
Q 004856 661 KMRTFLRD 668 (727)
Q Consensus 661 ~~~~~m~~ 668 (727)
.+-.+..+
T Consensus 1692 ~VKarA~E 1699 (1710)
T KOG1070|consen 1692 YVKARAKE 1699 (1710)
T ss_pred HHHHHHHH
Confidence 55444433
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=4e-05 Score=73.88 Aligned_cols=184 Identities=10% Similarity=-0.024 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-c-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----HHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN-S-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITW 506 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 506 (727)
.....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...+++.....|+. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777788899999999999999998875422 1 23466778889999999999999999975544532 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 507 NSMISAYAKH--------GDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 507 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
..+..++... |+.++|.+.|+++... .|+.. .+..+..... .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HHH
Confidence 5555666654 7889999999999884 56543 2222211100 00 0000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PF---KP-DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
..+...|.+.|++++|...+++. .. .| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24567788888888888888876 22 23 235777788888888888888888887766554
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.34 E-value=5.2e-05 Score=69.99 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=111.1
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 557 (727)
-.|.+.|+++......+.+. .|. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45777777776654443322 111 01123566778888888877743 34678888999999999999999
Q ss_pred HHHHHHhHHhcCCCC-ChhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 558 RIIFKEMKESYGYEP-SQEHYASMVNLL-GRAGH--MDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
...|++..+. .| +...+..+..++ .+.|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988853 44 566788888864 67777 58999999988 55664 45666666669999999999999999
Q ss_pred HHccCCCCcchHHH
Q 004856 632 LISMEPENAGNYVL 645 (727)
Q Consensus 632 ~~~~~p~~~~~~~~ 645 (727)
++++.|++..-+..
T Consensus 170 aL~l~~~~~~r~~~ 183 (198)
T PRK10370 170 VLDLNSPRVNRTQL 183 (198)
T ss_pred HHhhCCCCccHHHH
Confidence 99998876655543
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=1.8e-05 Score=82.45 Aligned_cols=190 Identities=16% Similarity=0.156 Sum_probs=160.3
Q ss_pred hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
.+++|--..-..+...+.+.|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -+||+.-|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 3456767777788899999999999999999765 788899999999999999999998887 3789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSE 621 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 621 (727)
+........-+++|+++.+....+ .-..+.....+.++++++.+.++.. .+.| -..+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 999988888899999998765432 1122233344579999999999876 5555 45688888888889999
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
++.|...|.....++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999887765
No 122
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.00014 Score=72.37 Aligned_cols=190 Identities=8% Similarity=0.033 Sum_probs=141.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 004856 477 FISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHG-DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 554 (727)
-..+...++.++|....+++....| +...|+..-..+...| ++++++..++++.+.. +-+..+|+.....+.+.|..
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 3345566788888888888554455 5567887777777777 6799999999999853 22556677666666666653
Q ss_pred --HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc---CC----HH
Q 004856 555 --EEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH---SE----TE 623 (727)
Q Consensus 555 --~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~~ 623 (727)
+++..+++.+.+. -+-+...|+....++.+.|+++++++.++++ ...| +...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 6778888888854 3345778988889999999999999999998 4444 567888877665544 22 35
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHhc----CChhHHHHHHHHHHhC
Q 004856 624 LAELTAEKLISMEPENAGNYVLLSNIYAAA----GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 624 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~ 669 (727)
.++....+++..+|+|..++..+..++... ++..+|.+......+.
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 678888899999999999999999999883 4456677777765543
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=7.1e-05 Score=68.79 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=112.7
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHH
Q 004856 534 VRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWG 610 (727)
Q Consensus 534 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 610 (727)
..|+ ... ..+-.++...|+-+....+...... ..+.+......++....+.|++.+|...+.+. .-.||...|+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 3563 444 6677778888888888888777653 34455667777999999999999999999998 3445778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
.+..+|.+.|++++|...|.+++++.|.++..+.+++-.|.-.|+.+.|..++......+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999999999999999999998876654
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00024 Score=78.05 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=118.2
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHH
Q 004856 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFL 542 (727)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 542 (727)
..+.+...+..|.....+.|.+++|+.+++......|| ...+..++..+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 34566888888999999999999999999997766775 457778889999999999999999999984 564 66677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLL 613 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll 613 (727)
.+..++.+.|++++|..+|+++... .+-+...+..+...+-+.|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8888899999999999999999863 2233678889999999999999999999988 3344444555444
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0081 Score=61.08 Aligned_cols=173 Identities=12% Similarity=0.042 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc-hHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 416 SLEALRLFSEMKLEG-VEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS-LSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 416 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
.+.....++++...- +.|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ ++.++++++..||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 444445555554422 2232 345556666666666777777777777766555 66666777765553 5666677777
Q ss_pred Hh-ccCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 494 DE-EKIDSKDIIT-WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 494 ~~-~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
+. ++. .+|... -+..+.-+...++-..|..+|++....++.|+ ...|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 65 332 344333 34455666666777777777777776655554 34677777766777777777766666655433
Q ss_pred --CCCChhHHHHHHHHHHhcCCHH
Q 004856 570 --YEPSQEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 570 --~~p~~~~~~~li~~~~~~g~~~ 591 (727)
..+....-..+++.|.-.+...
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhhcCCCChHHHHHHHHhhccccc
Confidence 2222233334455554444433
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.6e-06 Score=54.59 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=33.0
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 004856 97 LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131 (727)
Q Consensus 97 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (727)
++||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00013 Score=80.68 Aligned_cols=149 Identities=9% Similarity=0.069 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN 550 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 550 (727)
.+..+..+|-+.|+.++|..+++++....| |+...|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555555555555555555433323 445555555555555 555555555554432 333
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
.+++..+.++|.++... .|+ ...+..+.+.... ..+..--..++.-+-.-|....+++++..++
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44555555555555532 222 2222222211111 1112223345555666688888999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHH
Q 004856 630 EKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999999998888877
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.2e-06 Score=53.98 Aligned_cols=35 Identities=37% Similarity=0.508 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCCh
Q 004856 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDS 233 (727)
Q Consensus 199 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 233 (727)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=1.6e-05 Score=67.94 Aligned_cols=96 Identities=10% Similarity=0.002 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
....-.+...+...|++++|.++|+-. ...|. ..-|..|...|...|++++|+..|.++..++|+|+.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455667778899999999999887 45664 4567777778999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004856 652 AAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 652 ~~g~~~~a~~~~~~m~~~ 669 (727)
..|+.+.|++-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987655
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.00032 Score=70.28 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=76.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGH 589 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 589 (727)
.+...|++++|+..++.++.. .|| ..-.......+...++.++|.+.++++.. ..|+ ....-.+.++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 344556666666666665553 343 33344445556666666666666666653 2444 3344555666666666
Q ss_pred HHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 590 MDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 590 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
+.+|+.+++.. ..+-|+..|..|..+|...|+..++..... ..|...|+|++|.......+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHH
Confidence 66666666655 222245566666666666666555544332 34455667777777766666
Q ss_pred hC
Q 004856 668 DR 669 (727)
Q Consensus 668 ~~ 669 (727)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 55
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00096 Score=60.96 Aligned_cols=164 Identities=15% Similarity=0.231 Sum_probs=116.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSKDI---ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 552 (727)
++-+...+|+.+.|...++++....|.. .-..+| -+-..|++++|+++++..++.. +.|.+++..-+...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3334455677777777777654433432 222222 2345788999999999998865 446778887777777788
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC---CHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHS---ETELAEL 627 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~A~~ 627 (727)
+.-+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+...| +.+.+..
T Consensus 135 K~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888874 6778889999999999999999999999988 3455 3344455555533333 7888999
Q ss_pred HHHHHHccCCCCcchHH
Q 004856 628 TAEKLISMEPENAGNYV 644 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~ 644 (727)
+|.+++++.|.+...+.
T Consensus 213 yy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHhChHhHHHHH
Confidence 99999999986655444
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0024 Score=58.88 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=32.8
Q ss_pred HHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 590 MDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 590 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
+.+|.-+|+++ ...|+..+.+-...++...|++++|+.+++.++..++.++.+...++-+-...|+-.+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 34444444444 1334444444444444555555555555555555555555555555544444444433
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=4e-06 Score=52.29 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 004856 96 SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129 (727)
Q Consensus 96 ~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p 129 (727)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=0.0001 Score=63.87 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
....+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444455555555555555555554 2233 3344444545555666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 004856 654 GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 654 g~~~~a~~~~~~m~~~ 669 (727)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666655444
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=7.7e-05 Score=75.53 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKM 618 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 618 (727)
...|+..+...++++.|..+++++.+. .|+ ....|+..+...++-.+|.+++.+. ...| +..........|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344556666677777777777777754 344 3344666666677777777777766 3334 43344444455888
Q ss_pred cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
.++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.0009 Score=67.16 Aligned_cols=137 Identities=11% Similarity=0.036 Sum_probs=81.8
Q ss_pred HHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 557 (727)
+...|++++|+..++.+....| |+..+......+...++..+|.+.++++.. ..|+ ......+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 4455666666666666544445 334444455666666667777777666666 3454 44455556666666666666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
+.+++.... ..+-|+..|..|..+|...|+..+|....-+ .+...|+++.|+..+..+.+.
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH---------------HHHhCCCHHHHHHHHHHHHHh
Confidence 666666654 3444556666666666666666655543332 245566666666666666653
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=6.6e-06 Score=51.25 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCC
Q 004856 198 KSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEF 231 (727)
Q Consensus 198 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 231 (727)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999887
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.99 E-value=0.026 Score=57.54 Aligned_cols=426 Identities=11% Similarity=0.111 Sum_probs=232.5
Q ss_pred CCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC--CeehHHHHHH
Q 004856 230 EFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK--DRVVWNIMIS 307 (727)
Q Consensus 230 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 307 (727)
+-|..+|..||+-+-.. .+++++..+++++.. ++.....|..-|..-.+..+++..+++|.+...+ ++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34667888888877665 888888888888765 3556677888888888888888888888887553 6677777665
Q ss_pred HHHhc-CCchH----HHHHHHH-HHHcCCCCChhh----HHHHHHHhhcCC------ChHHHHHHHHHHHHhCCCCChhH
Q 004856 308 AYYQS-GFPKE----SLELLMC-MVRSGFRADLFT----AIAAVSSISTMK------NIEWGKQMHANVLRNGSDYQVSV 371 (727)
Q Consensus 308 ~~~~~-g~~~~----A~~~~~~-m~~~g~~p~~~t----~~~ll~~~~~~~------~~~~a~~~~~~~~~~g~~~~~~~ 371 (727)
.--+. |.... ..+-|+- |.+.|+.+-... |...+...-..| +++..+++++.++..-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 43332 33222 1222322 233454443222 223333322333 34445555555543322211222
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHhcCCC------CCh---------------hHHHHHHHHHHhcCCh-
Q 004856 372 HNSLIDMY-------------CECEDLNCARKIFDSVKT------KTV---------------VSWSSMIKGYVTHDQS- 416 (727)
Q Consensus 372 ~~~li~~~-------------~~~g~~~~A~~~~~~~~~------~~~---------------~~~~~li~~~~~~g~~- 416 (727)
|+-....- -+...+..|+++++++.. ++. ..|-.+|.-=..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 32211100 011223444444443321 011 1133333221111100
Q ss_pred -------HHHHHHHHHH-HHCCCCCCHHH-HHHHH----HHHhcCCCh-------HHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 417 -------LEALRLFSEM-KLEGVEVDFVT-IINIL----PACVNIGAL-------EHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 417 -------~~A~~~~~~m-~~~g~~p~~~t-~~~ll----~a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
....-.+++. .-.+..|+..- +...+ +.+...|+. +++..+++..+..-...+...|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111111 11222333211 11111 122333333 3344444444433333344444444
Q ss_pred HHHHHhcC---CHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh
Q 004856 477 FISYAKCG---CIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVN 550 (727)
Q Consensus 477 i~~~~~~g---~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 550 (727)
.+.--..- ..+.....++++... ..-..+|...+..-.+..-...|..+|.+..+.+..+ ....+++++.-+|.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 33211111 134444445443321 1123467778888888888999999999999988777 56677788877765
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HhhHHHHHHHHHHcCCHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---PFKPD--ARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~A 625 (727)
++.+-|.++|+.=.+++|-. +.-....++.+...++-..|..+|++. .+.|+ ...|..++.--..-|+...+
T Consensus 415 -kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 415 -KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 78899999999877765433 344466788888999999999999988 23444 36899999999999999999
Q ss_pred HHHHHHHHccCCCC----cchHHHHHHHHHhcCChhHHH
Q 004856 626 ELTAEKLISMEPEN----AGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 626 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~ 660 (727)
..+-++....-|.+ ...-..+.+.|.-.+....-.
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 99988887765522 123334555566555554433
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.99 E-value=0.00022 Score=61.82 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 004856 525 LYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF 602 (727)
Q Consensus 525 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 602 (727)
.+++... ..|+ ......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 3453 344566667777788888888888877753 2335667777788888888888888887776 34
Q ss_pred CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 603 KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 603 ~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 3456666666688888888888888888888886654
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0032 Score=58.16 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=90.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cC
Q 004856 477 FISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AG 552 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g 552 (727)
...|.+.|++++|.+...... .-+....+ +..+.+..+++-|.+.+++|.+ --+..|.+.|..++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccch
Confidence 344666777777777666522 22222222 2334555667777777777775 2355666666666544 34
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcC-CHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHS-ETELAELTA 629 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~ 629 (727)
.+.+|.-+|++|.++ .+|+..+.+.+..++...|++++|..++++. ....++.+.-.++-.-...| +.+--.+..
T Consensus 188 k~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 567777777777753 5677777777777777777777777777766 22223444433443333333 445555666
Q ss_pred HHHHccCCCCc
Q 004856 630 EKLISMEPENA 640 (727)
Q Consensus 630 ~~~~~~~p~~~ 640 (727)
.++....|..+
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 66666666543
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=1.7e-05 Score=48.12 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=26.8
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 004856 97 LLYGTILKNLSKFGEYEKTLLVYKQMALQSM 127 (727)
Q Consensus 97 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~ 127 (727)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0023 Score=58.58 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGL-LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 583 (727)
.|..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|++++|.++++.+.++ -+.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555566677889999999999999886 3 654322222 22345679999999999999975 24456677766666
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh---hH
Q 004856 584 LGRAGHMDEARELVKDM--PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW---NG 658 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~~ 658 (727)
.-..|+--+|++-+.+. .+..|...|.-+-..|...|+++.|.-.+++++=..|.++..+..+++++.-.|.. +-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788877888877776 46679999999999999999999999999999999999999999999998777754 45
Q ss_pred HHHHHHHHHhCC
Q 004856 659 VAKMRTFLRDRG 670 (727)
Q Consensus 659 a~~~~~~m~~~~ 670 (727)
+++++.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 777777665543
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00067 Score=68.87 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
...+|+..+...++++.|.++|+++....|++. -.++..+...++-.+|++++++.+... +-+...+......|.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334566667778899999999999886566644 347778888888999999999998742 33566666667778899
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 552 GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
++++.|+.+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+-.++.++..
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999985 4566 559999999999999999999999988644
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.00072 Score=59.21 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=55.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCC
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ--EHYASMVNLLGRAGH 589 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~ 589 (727)
.++...+.+.++.+.... |+. .....+...+...|++++|...|+.+... ...|+. .....|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 555555555555555532 221 22223344555556666666666665544 211211 123334555556666
Q ss_pred HHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004856 590 MDEARELVKDMPFKP-DARVWGPLLSACKMHSETELAELTAEKL 632 (727)
Q Consensus 590 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 632 (727)
+++|+..++.....+ ....+......+...|+.++|...|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666665542111 2233333444466666666666666554
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.3e-05 Score=47.55 Aligned_cols=31 Identities=39% Similarity=0.520 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHhCCC
Q 004856 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGA 229 (727)
Q Consensus 199 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 229 (727)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.0017 Score=56.84 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
+...+...|++++|...|+.. ...|+. .....+...+...|++++|...++.. ...+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 344444555555555555444 111221 12222233344455555555554331 111222334444455555555
Q ss_pred ChhHHHHHHH
Q 004856 655 KWNGVAKMRT 664 (727)
Q Consensus 655 ~~~~a~~~~~ 664 (727)
++++|+..|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555444
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.0073 Score=67.42 Aligned_cols=240 Identities=10% Similarity=0.036 Sum_probs=152.7
Q ss_pred CCCC-hhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHH
Q 004856 229 AEFD-SGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMIS 307 (727)
Q Consensus 229 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 307 (727)
..|+ ...+..|+..+...+++++|.++.+..++..+ .....|-.+...|...++.+++..+ .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhhh
Confidence 4443 44677788888888888888888886666532 1222233333356666665554444 2334
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 308 AYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNC 387 (727)
Q Consensus 308 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 387 (727)
......++.-...+...|... .-+...+-.+..+|-+.|+.+++..+++.+++.. +.|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 444444553344444445442 2344567778888888999999999999998887 66788889999889888 9999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CC
Q 004856 388 ARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL-GL 466 (727)
Q Consensus 388 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~ 466 (727)
|.+++.+. +..|...+++.++.+++.++... .|+...+ -.++.+.+... +.
T Consensus 168 A~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhcc
Confidence 98887763 33477777888888888888875 3333222 11222222221 23
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHH
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYA 514 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 514 (727)
.--..++-.+-..|-..++++++..++..+....| |.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33344555566677788888888888888654433 5556666666665
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00042 Score=58.34 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLL 613 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 613 (727)
++..+...+...|++++|...++.+.+.+.-.+ ....+..+...+.+.|++++|.+.++++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555556666666666666654311111 1223444555555555555555555554 22222 22344444
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 614 SACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
..+...|+.++|...++++++..|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 445555555555555555555555443
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0013 Score=64.34 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=115.2
Q ss_pred CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhH--
Q 004856 501 KDIITWNSMI-SAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH-- 576 (727)
Q Consensus 501 ~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-- 576 (727)
|....|..+- .++.-.|++++|...--..++. .+ +......-..++-..++.+.+...|++.. .+.|+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHH
Confidence 4445555443 3556778888888877666653 23 33333333334555677888888888776 34555322
Q ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 577 -----------YASMVNLLGRAGHMDEARELVKDM-PFKPDAR-----VWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 577 -----------~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
+..=.+-..+.|++.+|.+.+.+. .+.|+.. .|.....+..+.|+.++|+.-.+++++++|.-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 112234456889999999999887 5566543 44444445678999999999999999999988
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..+|..-++++...++|++|.+.++...+.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999998886554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00035 Score=55.76 Aligned_cols=92 Identities=26% Similarity=0.290 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
+..+...+...|++++|.+++++. ...|+ ...+..+...+...++++.|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566666777777777777765 33343 3455555666777788888888888888887877777778888888888
Q ss_pred ChhHHHHHHHHHHh
Q 004856 655 KWNGVAKMRTFLRD 668 (727)
Q Consensus 655 ~~~~a~~~~~~m~~ 668 (727)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776654
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00024 Score=66.68 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHHcCC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA-RVWGPLLSACKMHSE 621 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~ 621 (727)
..-..+.+++++|+..|.++++ +.|+ ...|..=..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4556677888888888888884 4554 556666778888888888888877766 566654 478888888888888
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHH
Q 004856 622 TELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+++|++.|+++++++|++......|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888888776433333
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00088 Score=56.38 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSN 648 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 648 (727)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555544 11222 1223333444555555555555555555544432 233445555
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 004856 649 IYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 649 ~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++.+.|++++|...++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555554443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=5.5e-05 Score=59.01 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 004856 588 GHMDEARELVKDM-PFKP---DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 663 (727)
|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555544 1112 233344444555566666666666655 4445544455555566666666666666665
Q ss_pred HH
Q 004856 664 TF 665 (727)
Q Consensus 664 ~~ 665 (727)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00069 Score=69.10 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSET 622 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 622 (727)
...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44556667777777777777753 2223556666777777777777777777766 4445 344565566667777777
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
++|+..++++++++|+++.....+..
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777777777776665555443
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00013 Score=54.37 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=57.3
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG-KWNGVAKMRTFLRD 668 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 668 (727)
+..+|..+...+...|++++|+..|+++++++|+++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35678888888999999999999999999999999999999999999999 79999999987654
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0023 Score=68.22 Aligned_cols=139 Identities=10% Similarity=0.030 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc--------CCHHHHHHHHHHhH
Q 004856 500 SKDIITWNSMISAYAKH-----GDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNA--------GLVEEGRIIFKEMK 565 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~ 565 (727)
..|...|...+.+.... ++..+|..+|++.++ ..|+ ...|..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677777777765432 236688888998888 5676 44555544433221 11223333333322
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21012223455665555555567777777777766 4556666666666667777777777777777777777555
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.62 E-value=0.0018 Score=63.56 Aligned_cols=133 Identities=11% Similarity=0.249 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN-AGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
..|-.++....+.+..+.|..+|.+.++.+ .-+...|......-.+ .++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2345556555555333 56777799999999986 4566778889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 583 LLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999988 323333 489999999999999999999999999988753
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0011 Score=62.48 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=87.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRA 587 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 587 (727)
..-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 3456788999999999999999 566 78889999999999999999999988887 46776 56999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 004856 588 GHMDEARELVKDM-PFKPDARVWGPLLSA 615 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 615 (727)
|++++|++.|++. .+.|+..+|..-+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999988 789988877665554
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.59 E-value=0.00017 Score=53.52 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999876555
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.2 Score=54.66 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=78.1
Q ss_pred HhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChH---
Q 004856 209 VQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLE--- 285 (727)
Q Consensus 209 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--- 285 (727)
.+.|+.++|..+++.....+.. |..|.-.+-.+|.+.+..+++..+|+.+.... |+......+..+|.|.+++.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554433322 44455555555555555555555555555432 33444444455555544433
Q ss_pred -HHHHHHhcCCCCCeehHHHHHHHHHhcCCch---------HHHHHHHHHHHcC-CCCChhhHHHHHHHhhcCCChHHHH
Q 004856 286 -DAKMLFDKMSDKDRVVWNIMISAYYQSGFPK---------ESLELLMCMVRSG-FRADLFTAIAAVSSISTMKNIEWGK 354 (727)
Q Consensus 286 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~---------~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~ 354 (727)
.|.+++...+++--..|+.+--.+......+ -|.+.++.+.+.+ -.-+..-...-+..+...+..++|.
T Consensus 131 kaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEAL 210 (932)
T ss_pred HHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHH
Confidence 2445555444433333333221111111111 1333334443332 1111111222223334455566666
Q ss_pred HHHHHHH-HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004856 355 QMHANVL-RNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394 (727)
Q Consensus 355 ~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (727)
.++..-. +.-..-+...-+.-++.+...+++.+..++-.+
T Consensus 211 ~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 211 EFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6653222 222222333344555556666666554444333
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.016 Score=50.41 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 004856 511 SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590 (727)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (727)
.+..+.=+++....-..+-.+ +.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccH
Confidence 344444455544443333333 5677777778889999999999999999988863 3445677788888889999999
Q ss_pred HHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 591 DEARELVKDM-PFKPD---ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
.+|...+++. ...|+ +.....+...+...|..+.|+..++.+++--| ++.........+.++|+.+++..-+..+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 9999999887 22232 22444556668999999999999999999888 6777778888899999888877665555
Q ss_pred HhC
Q 004856 667 RDR 669 (727)
Q Consensus 667 ~~~ 669 (727)
.+.
T Consensus 220 ~d~ 222 (251)
T COG4700 220 VDT 222 (251)
T ss_pred HHH
Confidence 443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00028 Score=51.76 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345778888999999999999988988888889999999999999999888887654
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0035 Score=56.73 Aligned_cols=129 Identities=12% Similarity=0.199 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYAS 579 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 579 (727)
...+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 44566777777888888888888888876432222 356777778888888888888888887753 34 3556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777665555333221 113677888888888888865 4444444444443
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.15 Score=50.84 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
+..+.-+...|+...|.++-.+.. -||-.-|-..+.+|+..++|++-.++... +-.++-|...+.+|.+.|.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk--v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK--VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 334455566777777777777776 67777788888888888888766654321 1234667777788888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+|..+...+. +..-+..|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777765521 134467777788877777665543
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.44 E-value=0.0059 Score=52.48 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.+...+...|++++|..+|+-+....| +..-|-.|..++...|++++|+..|....... +-|+.++-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 444556778888888888887554445 56677888888888899999999998888743 2357788888888888999
Q ss_pred HHHHHHHHHHhHHhcCCCC
Q 004856 554 VEEGRIIFKEMKESYGYEP 572 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p 572 (727)
.+.|++.|+......+-.|
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHHHHHhccCh
Confidence 9999999888876533333
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.43 E-value=0.0022 Score=65.41 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=85.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGR 586 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 586 (727)
....+...|++++|++.|++.++. .| +...|..+..+|...|++++|+..++.+... .| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 45 5778889999999999999999999999854 45 46688899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 004856 587 AGHMDEARELVKDM-PFKPDARVWGPLLSAC 616 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 616 (727)
.|++++|...|++. .+.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999988 5677665555555443
No 167
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0019 Score=61.24 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHHcC--CHHHHHHHHHHHHccCCCCcchHHH
Q 004856 571 EPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA-CKMHS--ETELAELTAEKLISMEPENAGNYVL 645 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (727)
+-|...|..|...|.+.|++..|..-|.+. .+.| ++..+..+..+ +...| +..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456778888888888888888888888877 4444 44455555555 33333 6778899999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 646 LSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 646 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
|+..+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999887553
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.17 Score=50.36 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMH 619 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 619 (727)
+.+.-+.-|...|....|.++..+. .+ |+...|...+.+|+..|+|++-.++... +..++-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555567777888888777665443 44 8889999999999999999998887654 34568999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|+..+|..+..++ .+..-+.+|.+.|+|.+|.+.-.+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888871 2256678899999999998875543
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0019 Score=58.55 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|+..++++++..|.+...+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444444555555555555444 11111 2345555555677777777777777777777777777777777776
Q ss_pred hcCC
Q 004856 652 AAGK 655 (727)
Q Consensus 652 ~~g~ 655 (727)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 6665
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.0016 Score=58.80 Aligned_cols=93 Identities=11% Similarity=-0.089 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777777888888777766 22222 2367777777889999999999999999999988888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 004856 649 IYA-------AAGKWNGVAKMRTFL 666 (727)
Q Consensus 649 ~~~-------~~g~~~~a~~~~~~m 666 (727)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 888888776666654
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0027 Score=50.47 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 585 (727)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3344455555556666666655555431 112344444555555555555555555555432 1122234444444444
Q ss_pred hcCCHHHHHHHHHh
Q 004856 586 RAGHMDEARELVKD 599 (727)
Q Consensus 586 ~~g~~~~A~~~~~~ 599 (727)
..|+.++|...+.+
T Consensus 80 ~~~~~~~a~~~~~~ 93 (100)
T cd00189 80 KLGKYEEALEAYEK 93 (100)
T ss_pred HHHhHHHHHHHHHH
Confidence 44444444444433
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.00099 Score=48.83 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+...+.+.|++++|++.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677788888888888877 44564 44666777778888888888888888888888753
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.23 E-value=0.00099 Score=51.85 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=42.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDV-RPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 593 (727)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..+++. . ...|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566667777776666321 01233344456666666777777666666 2 12222 23333446666666666666
Q ss_pred HHHHHh
Q 004856 594 RELVKD 599 (727)
Q Consensus 594 ~~~~~~ 599 (727)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.068 Score=55.69 Aligned_cols=51 Identities=24% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+...+...+.+...+.-|-++|..|-.. .+++++....+++.+|..+-++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhC
Confidence 3333334444444555555565555321 23455556666666666666655
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.22 E-value=0.02 Score=56.58 Aligned_cols=24 Identities=17% Similarity=0.540 Sum_probs=10.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
.+...+.+.|++++|+++|++...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=97.20 E-value=0.0034 Score=54.17 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=74.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChh
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWN 657 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 657 (727)
...-+...|++++|..+|.-+ -..| +..-|..|...|...++++.|+..|..+..++++|+.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344455788999999888876 2233 44457777777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 004856 658 GVAKMRTFLRD 668 (727)
Q Consensus 658 ~a~~~~~~m~~ 668 (727)
.|+..|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987766
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.0012 Score=49.79 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=50.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..+.+.+++++|..+++++++++|+++..+...+.++.+.|++++|.+.++...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999998887653
No 178
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.33 Score=51.99 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=75.7
Q ss_pred hCCCCCChhhHHH-----HHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC---ChHHHHHHHhcCCC-
Q 004856 226 MEGAEFDSGTLIN-----LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA---SLEDAKMLFDKMSD- 296 (727)
Q Consensus 226 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~- 296 (727)
.-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666655543 4555666677777777766653221111 456666666666553 23344555555555
Q ss_pred -CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCC----CChhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 004856 297 -KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFR----ADLFTAIAAVSSISTMKNIEWGKQMHANVL 361 (727)
Q Consensus 297 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (727)
...++|..+.+-..+.|+.+-|..+++.=...+-+ .+..-+...+.-+...|+.+...+++-++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46678888888888889988888877542111100 112223344455555666655555554443
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.14 E-value=0.012 Score=46.81 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDV-RPDLITFLGLLTACVNAG--------LVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456667777999999999999999999 899999999999877653 345678888999887 899999999
Q ss_pred HHHHHHHHh
Q 004856 578 ASMVNLLGR 586 (727)
Q Consensus 578 ~~li~~~~~ 586 (727)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 180
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00029 Score=43.32 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.2
Q ss_pred HHHHHHccCCCCcchHHHHHHHHHhcCChhHHHH
Q 004856 628 TAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAK 661 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 661 (727)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.12 E-value=0.016 Score=61.99 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHh
Q 004856 534 VRPDLITFLGLLTACVNA-----GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRA--------GHMDEARELVKD 599 (727)
Q Consensus 534 ~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~ 599 (727)
.+.|...|...+++.... +..+.|..+|++..+ .+|+ ...|..+..++... +++..+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455788888888885543 237789999999985 4777 34555544444321 223455555555
Q ss_pred C---C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 600 M---P-FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 600 ~---~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
. + ...+...+..+.-.....|++++|...++++++++| +..+|..++.++...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3 1 223446677776666778999999999999999999 68899999999999999999999999876654
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.031 Score=50.33 Aligned_cols=80 Identities=10% Similarity=0.152 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP--DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYAS 579 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 579 (727)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 4566667777777888888888888887642222 1346777778888888888888888877743 333 344555
Q ss_pred HHHHHH
Q 004856 580 MVNLLG 585 (727)
Q Consensus 580 li~~~~ 585 (727)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.006 Score=48.51 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCChhhHHHHHHHhhcCC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 004856 303 NIMISAYYQSGFPKESLELLMCMVRSGF-RADLFTAIAAVSSISTMK--------NIEWGKQMHANVLRNGSDYQVSVHN 373 (727)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 373 (727)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999887653 2446678899999999999999999
Q ss_pred HHHHHHHh
Q 004856 374 SLIDMYCE 381 (727)
Q Consensus 374 ~li~~~~~ 381 (727)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887764
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.52 Score=49.97 Aligned_cols=153 Identities=10% Similarity=-0.000 Sum_probs=84.7
Q ss_pred cCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC-----CeehHHHHHHHHHhcCCchHHHH
Q 004856 246 LKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-----DRVVWNIMISAYYQSGFPKESLE 320 (727)
Q Consensus 246 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~ 320 (727)
-|++++|+++|-.+-+.+ ..|.++.+.|++-...++++.-... -...|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776655442 3366677777777777777654322 12357777777777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh
Q 004856 321 LLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTV 400 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 400 (727)
.|..-.. . ...+.++.+..++++-+.+- ..++-+....-.+.+++.+.|.-++|.+.|-+...|.
T Consensus 818 yY~~~~~------~---e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk- 882 (1189)
T KOG2041|consen 818 YYSYCGD------T---ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK- 882 (1189)
T ss_pred HHHhccc------h---HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-
Confidence 7655321 1 11223333333332222221 1234455555666677777777777776665544442
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHH
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m 426 (727)
+-+..|...+++.+|.++-++.
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhc
Confidence 2234455556666666655443
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.0029 Score=61.77 Aligned_cols=129 Identities=14% Similarity=0.076 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHh
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKE---MKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-------PF-KPDAR 607 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 607 (727)
.|..|.+.|.-.|+++.|+...+. +.+.||-+.. ...+..|.+++.-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666677889998877653 3334454433 447788899999999999999888764 21 12344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHcc----C--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISM----E--PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+..+|.+.|.-..+++.|+.+..+=+.+ + .....++..|+++|...|..+.|..+.....+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667888888888899999887775543 2 22456788999999999999999888776543
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.021 Score=56.12 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPA-CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (727)
+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444555555555554321 1112222222211 22234444455555555443 244455555556666
Q ss_pred HhcCCHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 481 AKCGCIEMAGELFDEEKIDSKDI----ITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
.+.|+.+.|..+|++....-+.. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666643322322 3566666666666666666666666655
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.07 E-value=0.0075 Score=61.67 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=87.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhc--cCCCCCHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL--GLNSLSSVNTAIFISYAKCGCIEMAGELFDEE--KIDSKDII 504 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~ 504 (727)
.+...+...+..+++.+....+++.+..++-..... .......+..++|+.|.+.|..+++..+++.- -+.-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667778888888888888888888876666654 22223334457788888888888888877762 22357888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
++|.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777776666777777666666654
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.092 Score=48.61 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=114.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC--Ch--------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTK--TV--------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINI 441 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 441 (727)
+++|...|.-..-+++-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+..+++..+....-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 556666665555555555555443322 22 23456777777788888889999999887666677778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCC-----chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHH
Q 004856 442 LPACVNIGALEHVKYLHGYSMKLGLN-----SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAK 515 (727)
Q Consensus 442 l~a~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~ 515 (727)
.+.-.+.|+.+.|...++...+..-. ....+.......|.-.+++..|...|+++.... .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999877764333 333333344445667788888888888866443 355666665555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
.|+..+|++..+.|+. ..|...+-++
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 7888899999988887 4565554443
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.05 E-value=0.72 Score=50.63 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=144.3
Q ss_pred HHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHh--cccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh
Q 004856 207 LAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST--VELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL 284 (727)
Q Consensus 207 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 284 (727)
.....+++.+|+.....+.+. .|+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-..|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345568889999988888765 3554 455666665 5789999999888877666544 888899999999999999
Q ss_pred HHHHHHHhcCCCCCe--ehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC----------ChHH
Q 004856 285 EDAKMLFDKMSDKDR--VVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK----------NIEW 352 (727)
Q Consensus 285 ~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~ 352 (727)
++|..++++....++ .....+..+|++-+.+.+-.+.--+|-+ .++-+...|.++++...+.- -+..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999999977544 3444555677777766654333333332 24446777888777655321 1234
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 004856 353 GKQMHANVLRNGSDYQ-VSVHNSLIDMYCECEDLNCARKIFDS-----VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 353 a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 426 (727)
|....+.+++.+-+.. ..=.-.-.......|++++|.+++.. ...-+...-+--+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5556666655541111 11112223344567889999998832 22234444455566777888888888888888
Q ss_pred HHCC
Q 004856 427 KLEG 430 (727)
Q Consensus 427 ~~~g 430 (727)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8775
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.02 E-value=0.015 Score=59.54 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE--GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
..+....++.......+.+++..++.+.... ....-..|..+++..|...|..+.+..++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4455666777777777788888888887765 22233445568888888888888888888888888888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHc
Q 004856 477 FISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKH 516 (727)
Q Consensus 477 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~ 516 (727)
++.+.+.|++..|.++...|... ..+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999998888888875422 22334444444444443
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.00 E-value=0.48 Score=47.79 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=128.8
Q ss_pred HCCCCCCHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhCCCc----hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 004856 428 LEGVEVDFVTI-INILPACVNIGALEHVKYLHGYSMKLGLNS----LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD 502 (727)
Q Consensus 428 ~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 502 (727)
..-+.|+.... ..+...+.. +.+++..+.+.+....+.+ -...+..++....+.++...|...+.-+....|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 33355654322 334444433 4455544444443332221 2345556666667777777777777665443444
Q ss_pred HHHH-------HHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChHHHHHHHH---HHHhcCC-HHHHHHHHHHhHHh
Q 004856 503 IITW-------NSMISAYA----KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT---ACVNAGL-VEEGRIIFKEMKES 567 (727)
Q Consensus 503 ~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~g~-~~~a~~~~~~~~~~ 567 (727)
...- ..+-+..+ ..-+...=+.+|+......+.-.. -...|+. -+-+.|. -++|+++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~- 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ- 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence 3211 11112222 112333445566666554322211 1111222 2334444 6788888887774
Q ss_pred cCCCC-ChhHHHHHH----HHHHhc---CC---HHHHHHHHHhCCCCC----CHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 004856 568 YGYEP-SQEHYASMV----NLLGRA---GH---MDEARELVKDMPFKP----DARVWGPLLSA--CKMHSETELAELTAE 630 (727)
Q Consensus 568 ~~~~p-~~~~~~~li----~~~~~~---g~---~~~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~A~~~~~ 630 (727)
+.| |..+-+.+. ..|..+ .. +-+-+.++++.++.| +...-|.|..| +..+|++.++.-...
T Consensus 409 --ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 --FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred --hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 333 333322221 112111 11 222344455556655 34467777777 778999999999888
Q ss_pred HHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 631 KLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 631 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
-+.++.| ++.+|..++-++....++++|.+++..+
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 8889999 8999999999999999999999999864
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.97 E-value=0.0014 Score=48.73 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHS-ETELAELTAEKLISMEP 637 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 637 (727)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666666666677777777666665 33443 345555666677777 57777777777777766
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.019 Score=51.96 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHH
Q 004856 433 VDFVTIINILPACVN-----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507 (727)
Q Consensus 433 p~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (727)
.|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- |. ..+.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-------------p~-n~fQ 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-------------PR-NFFQ 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------------cc-cHHH
Confidence 344555555555432 34555555566777778888888888887776543 2211 11 1111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
++..- ...+-+-|++++++|...|+-||..|+..|++.+.+.+.
T Consensus 110 ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 123567789999999999999999999999999876654
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.012 Score=56.71 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=25.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+...+...|++++|...|+++++..|++ +.++..++.++...|++++|..+++.+.+
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444455555555555554444432 22333334444455555555555544433
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.87 E-value=0.16 Score=44.55 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 579 (727)
.|.+..--.|..++...|+..+|...|.+...--+.-|......+.++....++...|...++.+.+-..-.-++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555566667777777777777777664323335666666677777777777777777766643111112334445
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAE 630 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 630 (727)
+.+.|...|+.++|+..|+.. ..-|+...-.-....+.++|+.+++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 566777777777777777665 344444332222333455665555544333
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.87 E-value=0.01 Score=53.61 Aligned_cols=99 Identities=22% Similarity=0.367 Sum_probs=78.5
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-------------
Q 004856 490 GELFDEEKIDSKDIITWNSMISAYAK-----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA------------- 551 (727)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 551 (727)
...|++......+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 44555543336778888888888864 467788888899999999999999999999987542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 004856 552 ---GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH 589 (727)
Q Consensus 552 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 589 (727)
.+-+-|+.++++|... |+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2346689999999876 999999999999999977665
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.017 Score=47.82 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..++-..|+.++|+.+|++.... |+... ...+-.+...|...|++++|..++++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555543 43332 223333444444444444444444443
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.22 Score=47.72 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=105.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCHH-H---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSKDII-T---WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACV 549 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 549 (727)
....+.+.|++++|.+.|+++....|+.. . .-.++.++.+.+++++|...+++..+. .|+ ...+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888765555432 1 234556777888888888888888874 443 234444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhh-
Q 004856 550 N--AG---------------L---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARV- 608 (727)
Q Consensus 550 ~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~- 608 (727)
. .+ + ..+|...|+.+.++| |+ ..-..+|...+..+. +...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH---HHHHH
Confidence 2 11 1 223445555555442 33 222334443333331 1111
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 609 WG-PLLSACKMHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 609 ~~-~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
.. .+..-|.+.|.+.-|..-++.+++.-|+.+ .+...+..+|...|..++|..+.+.+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 223338889999999999999999777644 566788899999999999999887654
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.77 E-value=0.65 Score=45.88 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCC---C----CHH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDS---K----DII-TWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
..+..+...+.+.|++++|.++|+++.... + ++. .|-..+-++...||+..|.+.+++...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344567778999999999999999843211 1 111 122233344556777777777777665
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.76 E-value=0.035 Score=46.07 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=68.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLG 585 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 585 (727)
+..++-..|+.++|+.+|++..+.|.... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886654 44677888889999999999999998887532111 2223334456777
Q ss_pred hcCCHHHHHHHHHhC
Q 004856 586 RAGHMDEARELVKDM 600 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~ 600 (727)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999988877553
No 201
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.46 Score=47.30 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~ 662 (727)
+...+.+|...++..+..+.
T Consensus 417 FkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhc
Confidence 34556666666666665554
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.74 E-value=0.36 Score=50.63 Aligned_cols=214 Identities=10% Similarity=0.033 Sum_probs=110.4
Q ss_pred HHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 004856 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLF 335 (727)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 335 (727)
++.+.+.|-.|+... +...++-.|++.+|-++|.+ .|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 345556665565543 34455667888888888754 56666777777766421
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 004856 336 TAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQ 415 (727)
Q Consensus 336 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (727)
-..+-+...|+.++-+.+.+.--+.. .++.--.+...++...|+.++|..+. ..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 01122223333333333322211110 00000112333444555555554442 22333
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 416 SLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 416 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
.+-++++-+++.. .+..+...+..-+.+...+..|.++|..+-+. ..++++....+++.+|..+-++
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 3333333333321 22334444444445555566666666655432 2466777778888888888887
Q ss_pred ccCCCCCHHH-----------HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004856 496 EKIDSKDIIT-----------WNSMISAYAKHGDWSQCFKLYTQMKQSD 533 (727)
Q Consensus 496 ~~~~~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m~~~g 533 (727)
.++..||+.. |..--.+|.+.|+..+|..+++++....
T Consensus 799 hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 799 HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred CccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 7765555431 2223346777888888888888876543
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=1.1 Score=47.73 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=68.2
Q ss_pred CChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCC----hhhHHHHHHHhcccCChhHHHHHH
Q 004856 182 GFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD----SGTLINLLRSTVELKSLELGRIVH 256 (727)
Q Consensus 182 g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 256 (727)
|.+++|+++ -++.++|.. |..+.+.|++-...++++. -|-..| ...|..+-..++....++.|.+.|
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999888 777777764 6666777777776666543 111111 234555555555555555555555
Q ss_pred HHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHH
Q 004856 257 CVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLM 323 (727)
Q Consensus 257 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 323 (727)
.+.-.. ...+..|.+..++++-+.+-+.+++ |....-.|...+...|.-++|.+.|-
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 442111 2234444444555555544444443 33344455566666666666655543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.17 Score=46.89 Aligned_cols=135 Identities=11% Similarity=0.092 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----H
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-----S 579 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~ 579 (727)
.-++++..+.-+|.+.-.+.++++.++..-+.++.-...|.+.-.+.|+.+.|..+|+...+. .-+.+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345677777788899999999999998754457788888999999999999999999987765 3333333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 580 MVNLLGRAGHMDEARELVKDMP-FKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
....|.-.+++.+|...+.+.. ..| ++...|.-.-...-.|+...|++..+.+++..|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3445566778889999998884 233 333344333334567889999999999999988643
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0098 Score=43.91 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
.|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444432 1113334444444444444444444444444
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.013 Score=57.86 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+++.+...+.+.+++..|++..+++++++|+|..+...-+.+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 355566666888888889999999999999988888888899999999999999998888776
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.61 E-value=0.0089 Score=60.54 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh----hHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR----VWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555553 4444432 3555555555555555555555555554
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.099 Score=49.96 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCHhhHHH
Q 004856 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG---HMDEARELVKDM-PFKPDARVWGP 611 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p~~~~~~~ 611 (727)
-|...|..|..+|...|+.+.|...|....+. -.++...+..+..++.... ...++.++|+++ ..+|+.+.-..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 36888999999999999999999999888864 3345666777776665432 456888888888 66787766666
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 612 LLSA-CKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 612 ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
++.. +...|++.+|...++++++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6655 8999999999999999999887544
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.57 E-value=0.44 Score=48.00 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCC--H----HHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSKD--I----ITWNSMISAYAK---HGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
++-.|....+++...++.+.+... |+ . ..-....-++-+ .|+.++|+.++..+....-.+++.||..+.+
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344566777777777777776642 21 1 111123334555 7888888888888666555777888887777
Q ss_pred HHHh---------cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---Hh-C---C-C--C
Q 004856 547 ACVN---------AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD----EARELV---KD-M---P-F--K 603 (727)
Q Consensus 547 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~---~-~--~ 603 (727)
.|-. ...+++|...|.+.- .+.|+...--.++..+...|... +..++- .. . + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6542 123667777776554 34566444333444444444321 222222 11 1 1 1 2
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.+--.+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344456778888999999999999999999998753
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.0083 Score=45.07 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYV 644 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (727)
..|.+.+++++|.++++.+ ...|+ ...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4667788888888888877 45554 345555666688888888888888888888886655443
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.47 E-value=0.0049 Score=40.73 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
+|..+..++...|+.++|+++++++++.+|+|+.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57778888999999999999999999999999988887764
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.45 E-value=1.2 Score=44.93 Aligned_cols=71 Identities=8% Similarity=0.141 Sum_probs=59.6
Q ss_pred CCCchhhHHHHHHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 004856 61 LHQNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSL---LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131 (727)
Q Consensus 61 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (727)
-+.|..+|-.||.-|...|..+.-++++++|..|-.+ .|..-|++-....++..+..+|.+........|.
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldL 111 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDL 111 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhH
Confidence 4677889999999999999999999999999987544 7888898888888999999999988776555443
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=1.2 Score=44.12 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=169.3
Q ss_pred cCCHHHHHHHHhcCC---CCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCChHHH
Q 004856 382 CEDLNCARKIFDSVK---TKTVVSWSSMIKG--YVTHDQSLEALRLFSEMKLEGVEVDFV--TIINILPACVNIGALEHV 454 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a 454 (727)
.|+-..|.++-.+-. ..|-...-.++.+ -.-.|+++.|.+-|+.|... |... .+..+.-.--+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554432 2233333333332 23468888888888888752 3221 223333344567777777
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCCCHHH--HHHHHHHHH---HcCChHHHHHHH
Q 004856 455 KYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKI---DSKDIIT--WNSMISAYA---KHGDWSQCFKLY 526 (727)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~li~~~~---~~g~~~~A~~~~ 526 (727)
.++-...-..- +.-.-...+.+...+..|+++.|+++.+.-.. ..+++.- --.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77766555432 22345667778888888999999888886321 1444321 112222211 123456666665
Q ss_pred HHHHHCCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 004856 527 TQMKQSDVRPDLIT-FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM----P 601 (727)
Q Consensus 527 ~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 601 (727)
.+..+ +.||.+. -..-..++.+.|++.++-.+++.+.+. .|.+..+.. ..+.|.|+... .-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta~--dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTAL--DRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcHH--HHHHHHHHHHh
Confidence 55555 6787543 445567889999999999999999865 566555433 33456665322 222221 3
Q ss_pred CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 004856 602 FKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA-GKWNGVAKMRTFLRD 668 (727)
Q Consensus 602 ~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 668 (727)
.+|| ..+-.++..+-...|++..|..-.+.+....| ....|..|+++-... |+-.+++..+-+...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4554 44666667777889999999999999999999 578888898886655 888888877765544
No 214
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.36 E-value=0.36 Score=39.78 Aligned_cols=140 Identities=13% Similarity=0.131 Sum_probs=86.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 593 (727)
.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+-|.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 4467888888888887763 35555666665555555555566666655443222 234555555
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 594 RELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 594 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
...+-.++ .+..-...-+.....+|..+.-..++..+.+.+..++....-++.+|.+.|+..++.+++++..++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55554443 123344556677889999999999999988655558899999999999999999999999999999985
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.33 E-value=0.077 Score=46.44 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=70.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 625 (727)
....|+.+.+...++++...|.-++ +... ..........++.. -......++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777765542111 1111 11122222223222 112455566678899999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...+++++..+|-+...|..++.+|...|+..+|.++++++..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.21 E-value=0.08 Score=51.12 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555542 2332 24445555555555555555555555543
No 217
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.14 E-value=1.3 Score=42.37 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 598 (727)
..-|.+.|.+..|..-++.+.++|.-.|. .+....++.+|.+.|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34455566666666666666655432222 3344455566666666666655443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.09 E-value=0.064 Score=52.85 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh---ccCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CChH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDE---EKID----SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ----SDVR-PDLI 539 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~---~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~ 539 (727)
.|..|.+.|.-.|+++.|....+. +... ......+..+..++.-.|+++.|.+.|+.-.. .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555556677777665543 1100 11234566677777777888888777776433 2211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
...+|.+.|.-...++.|+.++.+-.. .....-....+.+|..+|...|..++|+.+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455667777777777777777654221 101122345677778888888877777766554
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.08 E-value=0.097 Score=43.90 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
..++.+++.++++.|+++....++++.-+...+.. ...+. .-......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 44566677777777777777777665332211100 00000 1122346778888888888888
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
..|++..|.++.+...+.|+++-+..+|..|+.-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888777777887777543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.83 E-value=0.86 Score=42.39 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=89.6
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhc-
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNA- 551 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~- 551 (727)
.+...|++++|...|+.+....|+ ....-.++.++-+.|++++|...+++.++. -|+ ...+...+.+.+.-
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 355667777777777775433332 234455677778888888888888887764 343 22233333332221
Q ss_pred ------------CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHH--HHHHHH
Q 004856 552 ------------GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGP--LLSACK 617 (727)
Q Consensus 552 ------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--ll~~~~ 617 (727)
+...+|...|+.+..+ |=......+|...+..+. +...-.. +..-|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELR---NRLAEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 1123444444444443 333333444444443331 1111111 233488
Q ss_pred HcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChhHHH
Q 004856 618 MHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 660 (727)
+.|.+..|..-++.+++.-|+.. .+...++.+|.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999888754 45567888899999888544
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.81 E-value=2.5 Score=42.87 Aligned_cols=355 Identities=15% Similarity=0.054 Sum_probs=173.1
Q ss_pred HHHHhcccCChhHHHHHHHHHHHhcC----CCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCC
Q 004856 239 LLRSTVELKSLELGRIVHCVAVVSDF----CKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 239 ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (727)
.+.++...|++.+|+.+++.++..=+ .-+..+|+.++-++++.=-++ +-+.+...=..-|--||..|.+.=+
T Consensus 134 ~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~ 209 (549)
T PF07079_consen 134 EAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH 209 (549)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH
Confidence 34455556666666666665554433 356667777666665432111 1111111112234455555543211
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC--ChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCCHHHHHHH
Q 004856 315 PKESLELLMCMVRSGFRADLFTAIAAVSSISTMK--NIEWGKQMHANVLRNGSDYQVS-VHNSLIDMYCECEDLNCARKI 391 (727)
Q Consensus 315 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 391 (727)
.-++ -.=..+-|...-+..++....-.. .+.--.+++......-+.|+-. +...|+.-+.+ +.+++..+
T Consensus 210 ~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 210 AFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 1111 000112333333444443332221 1222233333334444455432 23344444443 44444443
Q ss_pred HhcCC--------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHh-cCC---ChH
Q 004856 392 FDSVK--------TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII-------NILPACV-NIG---ALE 452 (727)
Q Consensus 392 ~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~-~~~---~~~ 452 (727)
-+.+. ++=+.++..++....+.++..+|-+.+.-+.-- .|+...-. .+-+..+ .-. ++.
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 33322 223356777888888888888888877766543 33322111 1111112 111 222
Q ss_pred HHHHHHHHHHHhCCCchHhHH--HHHHHHHHhcCC-HHHHHHHHHhccCCCC-CHHHHHHHHH----HHHH---cCChHH
Q 004856 453 HVKYLHGYSMKLGLNSLSSVN--TAIFISYAKCGC-IEMAGELFDEEKIDSK-DIITWNSMIS----AYAK---HGDWSQ 521 (727)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~li~----~~~~---~g~~~~ 521 (727)
.-..+|..+....+....-+. .--..-+-+.|. -++|.++++.+....+ |..+-|.+.. +|.+ ...+.+
T Consensus 360 ~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 360 DYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 233344444444433221111 111223445555 7788888887554333 5444443322 2222 123444
Q ss_pred HHHHHHHHHHCCCCCC----hHHHHHHHHH--HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004856 522 CFKLYTQMKQSDVRPD----LITFLGLLTA--CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595 (727)
Q Consensus 522 A~~~~~~m~~~g~~p~----~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 595 (727)
-+.+-+-..+.|+.|- ...-+.|..| +...|++.++.-+-.-+. .+.|++.+|..+.-.+....++++|.+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555667777773 2333444333 455688888776555444 478888888888888888888899999
Q ss_pred HHHhCCCCCCHhhHHHH
Q 004856 596 LVKDMPFKPDARVWGPL 612 (727)
Q Consensus 596 ~~~~~~~~p~~~~~~~l 612 (727)
++.+.+ |+...+++-
T Consensus 517 ~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 517 YLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHhCC--CchhhHHHH
Confidence 888874 566566553
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.017 Score=44.09 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+..++.+|...|++++|.+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.64 E-value=0.018 Score=43.86 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCC---CC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-----PFK---PD-ARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
..+|+.+...|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|++.++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357899999999999999999999877 122 22 34677777779999999999999998763
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=95.57 E-value=0.21 Score=51.07 Aligned_cols=158 Identities=11% Similarity=0.128 Sum_probs=98.8
Q ss_pred HHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-CCCCCC-hHHHHHHHHHHHhc---------CCHHHHHHHHHHhH
Q 004856 504 ITW--NSMISAYAKH-----GDWSQCFKLYTQMKQ-SDVRPD-LITFLGLLTACVNA---------GLVEEGRIIFKEMK 565 (727)
Q Consensus 504 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~-~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~ 565 (727)
..| ..++.+.... ...+.|+.+|.+... ..+.|+ ...|..+..++... ....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 245678888998882 225675 55676666655432 23445666666666
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 566 ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 566 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
+. -+-|......+..++.-.|+++.|..+|++. ...||.. +|......+...|+.++|.+..+++++++|....+-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 42 2234556666677677777788888888887 5667654 455555557778888888888888888888654433
Q ss_pred H--HHHHHHHhcCChhHHHHHHH
Q 004856 644 V--LLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 644 ~--~l~~~~~~~g~~~~a~~~~~ 664 (727)
. ..++.|...+ .++|+.++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 3 3344566655 456666553
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.50 E-value=0.15 Score=44.59 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEH 576 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 576 (727)
....++..+...|++++|+.+.+++... .| |...|..++.++...|+..+|.+.|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4445666677788888888888888874 45 677788888888888888888888876643 3477777654
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.49 E-value=0.28 Score=47.71 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhcCCChHHHHH
Q 004856 410 YVTHDQSLEALRLFSEMKLEG--VEVDFVTIINILPACVNIGALEHVKY 456 (727)
Q Consensus 410 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~ 456 (727)
+....+.++|+..+.+-...- ..---.+|..+..+.++.|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 345566677777666655421 11112344445555555555555444
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.087 Score=53.63 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ----EHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+...++.+..+|.+.|++++|+..|++..+ +.|+. ..|..+..+|...|+.++|++.++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467899999999999999999999999884 46764 35888999999999999999999887
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.44 E-value=1.3 Score=41.19 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=75.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNL 583 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~ 583 (727)
....+...|++.+|.+.|+++.... |+ ......++.++.+.|+++.|...++...+.+.-.|... .+-.+...
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 4455667788888888888877642 32 33455667777788888888888888777654444321 11111111
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch-----------------HHHH
Q 004856 584 LGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN-----------------YVLL 646 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l 646 (727)
+... .. ..+ ......+....|...++.+++.-|+++-+ -..+
T Consensus 89 ~~~~--~~---~~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 89 YYKQ--IP---GIL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHH--HH---HHH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--Cc---cch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 00 000 00122233455666666666666654322 2245
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..|.+.|.+..|...++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 67899999999999999988776
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.2 Score=49.85 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
.++..|.-+|.+.+++.+|++..++. ...| |.-..---..+|...|+++.|+..|+++++++|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667788888999999999888876 4444 455555566779999999999999999999999999888888887776
Q ss_pred cCChhHH-HHHHHHHHhC
Q 004856 653 AGKWNGV-AKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a-~~~~~~m~~~ 669 (727)
....++. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6666554 6778888654
No 230
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=5.4 Score=43.30 Aligned_cols=326 Identities=10% Similarity=0.063 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-CC-CCChhHHHHHHHHH
Q 004856 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRN-GS-DYQVSVHNSLIDMY 379 (727)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~ 379 (727)
-..+|.-+...+.+..|+++-..+...-..- ...|........+..+. .-..+++.+.+. +. -.+...|..+..-.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 3456666777777888887776664321111 34444444444443221 112222222221 11 12333466666666
Q ss_pred HhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 380 CECEDLNCARKIFDSVKTK--------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
..+|+.+.|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|..+ .+...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence 6788888888887653322 1112333444455566666666655555442 1111111111 112
Q ss_pred HHHHHHHHHHHH-hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh--------ccCCCCCHHHHHHHHHHHHHcCCh---
Q 004856 452 EHVKYLHGYSMK-LGLNSLSSVNTAIFISYAKCGCIEMAGELFDE--------EKIDSKDIITWNSMISAYAKHGDW--- 519 (727)
Q Consensus 452 ~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~--- 519 (727)
..|..++....+ .+-. .+-+.| ..++...+...|.. +.+..|+. .....++.+....
T Consensus 589 p~a~~lY~~~~r~~~~~-------~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRA-------TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFE 657 (829)
T ss_pred hhhhHHHHHHHHhhchh-------hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhH
Confidence 223333333222 1110 011111 12222222222211 11112222 2233344443331
Q ss_pred HHH-------HHHHHHHHH-CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 004856 520 SQC-------FKLYTQMKQ-SDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 520 ~~A-------~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (727)
++| +.+.+.+.. .|..-...|.+--+.-+...|+..+|.++-++.+ .||...|..=+.+++..++++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kwe 732 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWE 732 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHH
Confidence 111 122222221 2223334455566677788899999988876654 588889988899999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 592 EARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 592 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+-+++-+... .+.-|.-++.+|.+.|+.++|..++-+.-.+. -...+|.+.|++.+|.+.--+
T Consensus 733 eLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 733 ELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHHH
Confidence 9888887763 36678889999999999999998877643221 567789999999998876543
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.30 E-value=2.7 Score=39.71 Aligned_cols=191 Identities=20% Similarity=0.177 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH-HHH
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKI---DSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT-ACV 549 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~ 549 (727)
......+...+.+..+...+..... .......+......+...+++..+.+.+.........+ ......... ++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHH
Confidence 3333444444444444444444321 12233344444444444455555555555554422111 111111122 445
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HhhHHHHHHHHHHcCCH
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEP----SQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD--ARVWGPLLSACKMHSET 622 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~ 622 (727)
..|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+...++.
T Consensus 142 ~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 142 ELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 55555555555555432 111 1222223333344455555555555544 22222 33444444445555555
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+.|...+..+....|.....+..+...+...|.++++...+.+...
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554334444444444444455555555544433
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.18 Score=47.28 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=84.3
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----------
Q 004856 489 AGELFDEEKIDSKDIITWNSMISAYAKH-----GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG----------- 552 (727)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 552 (727)
.+..|......+.|-.+|-+++..+..+ +.++-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455555555467888888888887643 567777788999999999999999999999876532
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 004856 553 -----LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM-DEARELVKDM 600 (727)
Q Consensus 553 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 600 (727)
+-+-++.++++|... |+.||.++-..|++++++.|-. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 224478999999877 9999999999999999988864 3344444334
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.13 E-value=0.21 Score=40.96 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=52.7
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CC---cchHHHHHHHHHhcCCh
Q 004856 583 LLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEP-EN---AGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~---~~~~~~l~~~~~~~g~~ 656 (727)
++...|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++.- .. ..+|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666666555 2222 445666666666777777777777777766532 21 13455566667777777
Q ss_pred hHHHHHHHHHHhCC
Q 004856 657 NGVAKMRTFLRDRG 670 (727)
Q Consensus 657 ~~a~~~~~~m~~~~ 670 (727)
+.|+.-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777666665554
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.12 E-value=4.2 Score=41.14 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=102.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC--CC-ChHHHHHHHHHHHh---cCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDV--RP-DLITFLGLLTACVN---AGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
.++-+|....+++..+++.+.|...-- .+ ....-....-|+.+ .|+.++|++++..+... .-.+++++|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 556679999999999999999987310 11 12222234556666 89999999999996555 5667788888887
Q ss_pred HHHH----h-----cCCHHHHHHHHHhC-CCCCCHhh---HHHHHHHHHHcC-CHHHHHHHH----HHHHcc---C-CCC
Q 004856 582 NLLG----R-----AGHMDEARELVKDM-PFKPDARV---WGPLLSACKMHS-ETELAELTA----EKLISM---E-PEN 639 (727)
Q Consensus 582 ~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~g-~~~~A~~~~----~~~~~~---~-p~~ 639 (727)
..|- . ...+++|.+.+.+. ..+|+... +-+|+....... .-.+..++. ..+.+. + -.+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 6654 2 22478899888887 55665432 222322222111 111222222 111111 1 234
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+..++.++.-.|+.++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 556668889999999999999999998766
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.11 E-value=0.31 Score=40.88 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMK--------------ESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---- 600 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 600 (727)
.++..++.++++.|+++....+++..- ......|+..+..+++.+|+..|++..|.++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555444443322 11145567777777777777777777777777655
Q ss_pred CCCCCHhhHHHHHHHH
Q 004856 601 PFKPDARVWGPLLSAC 616 (727)
Q Consensus 601 ~~~p~~~~~~~ll~~~ 616 (727)
+++-+...|..|+.-+
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444566777777653
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.07 E-value=1.3 Score=45.54 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=98.9
Q ss_pred CHHHHHHHHHhcc---CCCCC-HHHHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 485 CIEMAGELFDEEK---IDSKD-IITWNSMISAYAK---------HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 485 ~~~~A~~~~~~~~---~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
..+.|..+|.+.. ...|+ ...|..+..++.. .....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4678888999855 44554 3445444443322 223557788888888854 34788888888888888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHhh---HHHHHHHHHHcCCHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKD-MPFKPDARV---WGPLLSACKMHSETELAE 626 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~---~~~ll~~~~~~g~~~~A~ 626 (727)
++.+.|...|++.. .+.|| ...|......+.-+|+.++|.+.+++ +...|.... ....+..|.. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 89999999999988 46777 44666666667779999999999999 477775432 2222334444 4577788
Q ss_pred HHHHHHHc
Q 004856 627 LTAEKLIS 634 (727)
Q Consensus 627 ~~~~~~~~ 634 (727)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 87765443
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=1.5 Score=46.65 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=104.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh-----HHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSD-VRPDL-----ITFLGLLTACVN----AGLVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
.++....-.|+-+.+++++.+..+.+ +.-.. ..|...+..++. ....+.+.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 45566666788888888887766532 11111 123333333332 45678899999999876 4665544
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHH-HHHH
Q 004856 578 A-SMVNLLGRAGHMDEARELVKDMP-FK-----PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL-LSNI 649 (727)
Q Consensus 578 ~-~li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~ 649 (727)
. .-.+.+...|++++|.+.|+++- .+ -....+--+...+....++++|...+.++.+...-+...|.. .+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 33466777899999999999762 11 122333444555777889999999999999877665566654 4445
Q ss_pred HHhcCCh-------hHHHHHHHHHHhC
Q 004856 650 YAAAGKW-------NGVAKMRTFLRDR 669 (727)
Q Consensus 650 ~~~~g~~-------~~a~~~~~~m~~~ 669 (727)
+...|+. ++|.++++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 7777888 8888888877654
No 238
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.94 E-value=1.3 Score=40.05 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=113.5
Q ss_pred HHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 557 (727)
|-..|-.+-|..-|.+.....|+ ...||-+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 44556666666666664444565 46788787778899999999999999988 4553 33433333445567899888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.+-+...-+...-+|=...|--++ .+.-++.+|..-+.+--...|..-|...+-.+.-- +.. .+.+++++.+...
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhcc
Confidence 877766654312223233333333 34556777765443322234556676666553221 111 1234444444333
Q ss_pred CC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 638 EN-------AGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 638 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
++ ..+|..|+.-|...|+.++|..+|+......+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 46889999999999999999999997655543
No 239
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.92 E-value=0.19 Score=44.65 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=63.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-CCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 582 NLLGRAGHMDEARELVKDM-P-FKP-----DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
+-+.+.|++++|..-+..+ . +.+ ..+.|..-..+..+.+.++.|+.-..++++++|....+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3345566666666665554 1 111 12233333445778888999999999999999988888888888999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 004856 655 KWNGVAKMRTFLRDRG 670 (727)
Q Consensus 655 ~~~~a~~~~~~m~~~~ 670 (727)
.+++|++-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999998887763
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.82 E-value=0.73 Score=39.15 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 586 RAGHMDEARELVKDM----PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+.|++++|.+.|+.+ +..| ....-..++.++.+.+++++|...+++.+++.|.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 445555555555544 1111 222334455556666666666666666666666554
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.45 E-value=5.9 Score=39.53 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=145.7
Q ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhh--cCCChHHHHHHHHHHHHhCCCCChhH--HHHH
Q 004856 302 WNIMISAYYQS--GFPKESLELLMCMVRSGFRADLFTAIAAVSSIS--TMKNIEWGKQMHANVLRNGSDYQVSV--HNSL 375 (727)
Q Consensus 302 ~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 375 (727)
|.+|-.++... |+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.+++-|+-|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 44444444332 3444444443333211 3344455555554433 346666666666666531 11111 1222
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc--
Q 004856 376 IDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDFV--TIINILPACVN-- 447 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~-- 447 (727)
.-.--+.|+.+.|...-+..-.. -.-.|.+.+...+..|+++.|+++++.-.... +.++.. .-..++.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 22334567777777666554432 23467778888888888888888887765532 344432 12223332211
Q ss_pred -CCChHHHHHHHHHHHHhCCCchHhH-HHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 004856 448 -IGALEHVKYLHGYSMKLGLNSLSSV-NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKL 525 (727)
Q Consensus 448 -~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 525 (727)
..+...|+..-....+ +.|+..- -..-...|.+.|++.++-.+++.+-+..|....|...+ +.+.|+. ++.-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdt--a~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDT--ALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCc--HHHH
Confidence 1233444444333333 2222211 11223456777777777777777665556555543322 2344443 2222
Q ss_pred HHHHHH-CCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 004856 526 YTQMKQ-SDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA-GHMDEARELVKDM 600 (727)
Q Consensus 526 ~~~m~~-~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 600 (727)
+++... ..++|| ......+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++..++.+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 222221 114553 4555566666667777777666555554 3467777777666665443 7777777777665
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.36 E-value=6.8 Score=39.85 Aligned_cols=132 Identities=13% Similarity=0.194 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH-HHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY-ASM 580 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 580 (727)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++. |+...|..+|+.=... -||...| ...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 4566667777666666777777777777777 45566677777766554 6667777777665543 2333332 345
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 581 VNLLGRAGHMDEARELVKDM--PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.++-|+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 56666777777777777755 12222 346777777777777777777777777777764
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=5.1 Score=38.54 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.. --.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCC
Confidence 344556666666666555532 113344445555666666666666665544322 001111111222334444444443
Q ss_pred HHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCCcchHHHHHHHHHhcC
Q 004856 593 ARELVKDMPFKP-DARVWGPLLSACKMHSETELAELTAEKLISME--PENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 593 A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 654 (727)
...+-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -.|..+-..++.++...|
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 334444433344 22333333444555555555555444444322 234444455555555555
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.25 E-value=1.5 Score=46.60 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHhccCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHCC--CC-CChHHHHHHHHHHHhcCCHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKDIITWNSMI-SAYAKHGDWSQCFKLYTQMKQSD--VR-PDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g--~~-p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
....+.|.++++.+....|+...|.-.- +.+...|+.++|++.|++..... .+ .....+--+...+.-..+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4577889999998887678887776553 45667899999999999766411 11 13445666677788889999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHH-HHHHhcCCH-------HHHHHHHHhC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMV-NLLGRAGHM-------DEARELVKDM 600 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~ 600 (727)
..|..+.+.... +..+|.-+. -++...|+. ++|.++|.+.
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 999998865222 233333322 334456666 7788888776
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.25 E-value=4.9 Score=37.82 Aligned_cols=199 Identities=20% Similarity=0.185 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHH-H
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKL-GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI-ITWNSMIS-A 512 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~-~ 512 (727)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.......++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555554444432 233444555555666667777788888887755332322 22222333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRP----DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRA 587 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 587 (727)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 8889999999999999865 333 2344445555567788999999999988854 233 366788888888899
Q ss_pred CCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 588 GHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+++++|...+... ...|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998887 44454 345555555555777899999999999998885
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.02 E-value=1.8 Score=36.81 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=28.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP---DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
.+.|++++|.+.|+.+...- +. ....-..|+.++.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44556666666666665531 11 1234445556666666666666666666544
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.98 E-value=0.61 Score=45.01 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=117.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS----MVNLLGRAGHM 590 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~ 590 (727)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|+...-...++++... ..|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899999875 4568888888888999999999999999888754 4566544443 34455689999
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChhHHHHHHH
Q 004856 591 DEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE----NAGNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
++|++.-++. ++.| |.-.-.++...+...|+..++.+...+-...-.. -...|-+.+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 4345555666688899999999988876543221 13345577777888899999999998
Q ss_pred HHHhCCCccCCc
Q 004856 665 FLRDRGLKKTPG 676 (727)
Q Consensus 665 ~m~~~~~~~~~~ 676 (727)
+-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765544545444
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=93.86 E-value=0.55 Score=40.90 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
+...|++++|..+|.-+....| +..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3456666666666665332222 44455666666666677777777766655533 224444555666666677777777
Q ss_pred HHHHHhHH
Q 004856 559 IIFKEMKE 566 (727)
Q Consensus 559 ~~~~~~~~ 566 (727)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77666664
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=0.74 Score=43.59 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYAS 579 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 579 (727)
.|+.-+.. .+.|++.+|...|...++.. |+ ...+..|..++...|++++|..+|..+.+.++-.|- ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45544433 34455677777776666642 32 234556666667777777777777666665443333 244555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 004856 580 MVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~ 600 (727)
|.....+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 555555555555555555544
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.80 E-value=9.6 Score=39.58 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRP--DLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
..+..++.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345666677888888888888887642 22 23466778888888888888888887764
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.75 E-value=2.9 Score=36.07 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=19.9
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcC
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKL 281 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 281 (727)
+..+...+.......+++.+++.+ ..+....|.++..|++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 333333344444444555544444 24455556666666544
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.71 E-value=9.3 Score=39.13 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP---DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEH 576 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 576 (727)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777888888888888777776643211 2233333445556667777777777776652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHhhHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEAREL-VKDMPFKPDARVWGPLLSACKMH------SETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
...+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.++.|....++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222223333 788999999999999999888888877766
Q ss_pred HHhc
Q 004856 650 YAAA 653 (727)
Q Consensus 650 ~~~~ 653 (727)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 5544
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.68 E-value=4.2 Score=35.04 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=41.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
.++..+...+........++.+...+ ..+...++.++..|++.+ ..+....++. . ++.......++.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHHHc
Confidence 34455555556666666666665554 234445555666655442 2223333321 0 1112223345555555
Q ss_pred CCHHHHHHHHHhCC
Q 004856 588 GHMDEARELVKDMP 601 (727)
Q Consensus 588 g~~~~A~~~~~~~~ 601 (727)
+.++++.-++.+++
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 55666666665554
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=1.9 Score=41.80 Aligned_cols=160 Identities=13% Similarity=-0.016 Sum_probs=109.7
Q ss_pred HhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCCHH
Q 004856 481 AKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL----GLLTACVNAGLVE 555 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~ 555 (727)
--.|+..+|-..++++....| |..+|+--=.+|...|+.+.-...+++..-. ..||...|. .+.-++...|.++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 446777788777887655444 8888988889999999999999999998764 356654433 3344456789999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD------ARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+|++.-++..+- -+.|.-...++...+.-.|+..++.++..+-.-.=+ ..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999988887743 123444556777888889999999999988731111 011111122244568999999999
Q ss_pred HHHH--ccCCCCcchH
Q 004856 630 EKLI--SMEPENAGNY 643 (727)
Q Consensus 630 ~~~~--~~~p~~~~~~ 643 (727)
++-+ +++.+|..+.
T Consensus 271 D~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHhhccchhhh
Confidence 8654 3556666443
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.63 E-value=0.12 Score=31.63 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777788888888888888888888885
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=6.1 Score=36.75 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----CC--CCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc----cCCCCcchHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDMP-----FK--PDA-RVWGPLLSACKMHSETELAELTAEKLIS----MEPENAGNYV 644 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~~-----~~--p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~ 644 (727)
+....+.|.+..++++|-..+.+-. +. |+. ..+-+.+-.+....|+..|+..++.-.+ ..|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 4444555666666666665555441 11 222 1233333344455577777777776544 3455666677
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 004856 645 LLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~ 663 (727)
.|+.+| ..|+.|++..+.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777665 345666665554
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.57 E-value=0.17 Score=30.82 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666788888888888888888888754
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.55 E-value=3.1 Score=43.71 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=93.2
Q ss_pred HHHhcCCchHHHHHHHH-HHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 004856 308 AYYQSGFPKESLELLMC-MVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLN 386 (727)
Q Consensus 308 ~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 386 (727)
...-.++++++.++.+. -.-..+ +......++.-+-+.|-.+.|.++-. |. ..-.+...++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 33455666666555541 111111 13335666666777777777766633 22 22345567899999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 004856 387 CARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGL 466 (727)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 466 (727)
.|.++-++.. +...|..|.....++|+++-|.+.|.+..+ +..++-.+...|+.+.-.++.+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9999887765 667999999999999999999999988654 45566667777777777777766666552
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
++....++.-.|++++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333344455666666666654
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.50 E-value=1.9 Score=45.21 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDE--EKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 557 (727)
..-.|+++++.+.... +.. .-+....+.++.-+.+.|..+.|+++.. |+.+ -.....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHH
Confidence 3446777776665552 111 1124456777777778888888877632 3222 22334567787777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.++.+. .++...|..|.+...+.|+++-|++.+.+.+ -|..|+-.|...|+.+.-..+.+.+...+-
T Consensus 338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 766422 2356688888888888888888888888775 355566667777777766666666554332
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 638 ENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 638 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+.....++.-.|+.++..+++..
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333345556777777776653
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.46 E-value=3.9 Score=33.98 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 571 (727)
+......-+..+...|+-++-.++++.+.+. -+|++.....+..||.+.|+..++.+++.++.++ |++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3344455667778888888888888887653 3677888888888888888888888888888776 653
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=0.66 Score=43.94 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HhhHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM----PFKPD-ARVWGPLL 613 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 613 (727)
.|+.-+.. .+.|++..|...|....+.|.-.+ ....+--|...+...|++++|...|..+ +-.|. +...--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35444443 344567777777777665431100 0112223455555555555555555444 11111 12223333
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 614 SACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
......|+.++|...++++.+.-|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 3344455555555555555554443
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.35 E-value=7.3 Score=36.78 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 575 (727)
...|+.- ..-.+.|++++|.+.|+.+..... .| ...+...++.++.+.+++++|+...++....++-.||..
T Consensus 35 ~~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 35 SELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 3444443 344577889999999888886431 11 345677778888888889999988888888777777654
No 263
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=92.95 E-value=0.095 Score=43.24 Aligned_cols=42 Identities=36% Similarity=0.596 Sum_probs=30.4
Q ss_pred ceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH--HHHHHcccccCc
Q 004856 676 GCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 676 ~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
|++|++. |.|++||.+||+...++..+..- ..++..++....
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDE 45 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchh
Confidence 6899876 99999999999996666655444 555555654333
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.90 E-value=8.5 Score=36.34 Aligned_cols=169 Identities=16% Similarity=0.143 Sum_probs=102.5
Q ss_pred HHhcCCHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhc--
Q 004856 480 YAKCGCIEMAGELFDEEKIDSK----DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD--LITFLGLLTACVNA-- 551 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~-- 551 (727)
-.+.|++++|.+.|+.+....| ...+--.++-++-+.+++++|+..+++.... -|+ ..-|...|.+.+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhcc
Confidence 3567899999999998775544 2334455667788999999999999998874 342 33455555555431
Q ss_pred -----CC---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHh-hHH-HHHHHHHHcCC
Q 004856 552 -----GL---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDAR-VWG-PLLSACKMHSE 621 (727)
Q Consensus 552 -----g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~-~ll~~~~~~g~ 621 (727)
.+ ..+|..-|+.+..+| ||.. -..+|..-+.... |.. -++ .+..-|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 12 233444455555442 3321 1111111111110 111 112 22334888899
Q ss_pred HHHHHHHHHHHHccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 622 TELAELTAEKLISMEPENAG---NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..|..-++.+++.-|+.+. .+..+..+|...|..++|...-+-+...
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999999887665544 4556677899999999988887665544
No 265
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.90 E-value=18 Score=40.20 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 373 NSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
..-+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+-..|. ........++..+.+.|.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 33444455667777777633222 23444445566667777887777777777655542 234445555555554443
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.89 E-value=22 Score=41.10 Aligned_cols=83 Identities=19% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETE 623 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 623 (727)
.+.+|..+|+|.+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+...+|.. -+..+.+...++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHH
Confidence 34555666666666666554432 11111122245666666666666666666665333332 122233444566
Q ss_pred HHHHHHHHHH
Q 004856 624 LAELTAEKLI 633 (727)
Q Consensus 624 ~A~~~~~~~~ 633 (727)
+|.++.....
T Consensus 1044 eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1044 EALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcc
Confidence 6666555443
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.72 E-value=1.1 Score=42.16 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=76.1
Q ss_pred HHHHHHhcCC--CCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----------
Q 004856 387 CARKIFDSVK--TKTVVSWSSMIKGYVT-----HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG---------- 449 (727)
Q Consensus 387 ~A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------- 449 (727)
..++.|.... ++|-.+|-+++..+.. .+.++-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456666666 5677788888877754 3566777778889999999999999999998775543
Q ss_pred ------ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 450 ------ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 450 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
.-+-+..++++|...|+.||..+-..|++++++.+-.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345677888888899988888888888888877653
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.48 E-value=6 Score=40.54 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=54.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEP----ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+|..+...+++.|+++.|...+.++....+ ..+.....-+..+...|+.++|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445788888999999999999999999988652 24667777889999999999999999888773
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.32 E-value=5.4 Score=39.31 Aligned_cols=221 Identities=10% Similarity=0.080 Sum_probs=102.1
Q ss_pred HhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHH-HHHHC-CCCCCH---HHHHHHHHHHhcC
Q 004856 380 CECEDLNCARKIFDSVKTK------TVVSWSSMIKGYVTHDQSLEALRLFS-EMKLE-GVEVDF---VTIINILPACVNI 448 (727)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~-g~~p~~---~t~~~ll~a~~~~ 448 (727)
....+.++|...+.+...+ -..++..+..+....|.+++++..-- +|.-. ...-.. ..|..+-.++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778887777665543 12466777788888888888765432 22110 011111 1223333333333
Q ss_pred CChHHHHHHHHHHHH-hCCCc---hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CC--CHHHHHHHHHHHHHcC
Q 004856 449 GALEHVKYLHGYSMK-LGLNS---LSSVNTAIFISYAKCGCIEMAGELFDEEKID-----SK--DIITWNSMISAYAKHG 517 (727)
Q Consensus 449 ~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g 517 (727)
.++.+++.+-..-.. .|..+ --.....+..++.-.+.++++++.|+..-.. .| ....+-.+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 333333333222221 11111 0112223444455555566666666652110 11 2345556666666666
Q ss_pred ChHHHHHHHHHHHH----CCCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQ----SDVRPDLITFLG-----LLTACVNAGLVEEGRIIFKEMKES---YGYEPS-QEHYASMVNLL 584 (727)
Q Consensus 518 ~~~~A~~~~~~m~~----~g~~p~~~t~~~-----ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~ 584 (727)
++++|+-...+..+ .++..=...|.. +.-++...|.+..|.+.-++..+. .|-.+. .....++.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66666655554433 111111122222 223445556666665555554332 122221 22334555666
Q ss_pred HhcCCHHHHHHHHHhC
Q 004856 585 GRAGHMDEARELVKDM 600 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~ 600 (727)
...|+.|.|..-++.+
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6666666666555543
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.86 E-value=0.64 Score=44.97 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSE 621 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 621 (727)
.+-|.++|.+++|+..|.... .+.| |..++..-..+|.+..++..|+.=.+.+ .+.. -...|.--..+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 334555555666665555544 2333 4455555555555555555544433332 1110 01122223333334455
Q ss_pred HHHHHHHHHHHHccCCC
Q 004856 622 TELAELTAEKLISMEPE 638 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~ 638 (727)
.++|..-++.+++++|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 55555555555555554
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.80 E-value=5.8 Score=34.58 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=44.8
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMP-FKPDARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
...++.+++..++..+.- +.|... .-..-...+.+.|++.+|..+|++.. ..|....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 345566666666666652 344422 22222344456677777777777662 2333334445555555444444444
Q ss_pred HHHHHHHccCC
Q 004856 627 LTAEKLISMEP 637 (727)
Q Consensus 627 ~~~~~~~~~~p 637 (727)
...+++++..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 55555555554
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.78 E-value=1.4 Score=42.46 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQ-----SDVRPDLITFLGL 544 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 544 (727)
.++..++..+..+|+.+.+.+.++++....| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556677788888888888888888654444 778888888888888888888888887765 5677766665554
Q ss_pred HHH
Q 004856 545 LTA 547 (727)
Q Consensus 545 l~~ 547 (727)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=14 Score=35.65 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=76.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH--HHHHHHHHHHHHcCChHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI--ITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A 522 (727)
....|+..++..+++...... +-+....-.+...|...|+.+.|..++..++....+. .....-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666555543 2224445567777888888888888888877532222 1212234444444444444
Q ss_pred HHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 523 FKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 523 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
..+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.++..-.-|...-..|++.+.--|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444433 45 5555666777777788888887766555544111223334444444443333
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.31 E-value=4.5 Score=33.48 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|+.-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34455555555555555554 233 4455555555555555555555555555443
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.25 E-value=0.54 Score=30.83 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++..++.+|...|++++|+++++++.+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999998876
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=12 Score=35.01 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|.--..+|....++++|...+.+..+. .+-|...| .. ...++.|.-+.+++.+ +.--...|+--..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hA------AKayEqaamLake~~k---lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HA------AKAYEQAAMLAKELSK---LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HH------HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 4444555666666666666665555431 12222111 11 1223334444444432 111123444445555
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C---cchHHHHHHHHHhcCChhH
Q 004856 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE---N---AGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~---~~~~~~l~~~~~~~g~~~~ 658 (727)
..+|.++-|-..+++.. -....-+.++|+++|++...+--. + ...+...+++|.+..+++|
T Consensus 102 ~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 55565555554444431 023445667777777777663221 1 1234455666777777777
Q ss_pred HHHHHHH
Q 004856 659 VAKMRTF 665 (727)
Q Consensus 659 a~~~~~~ 665 (727)
|...+.+
T Consensus 169 aa~a~lK 175 (308)
T KOG1585|consen 169 AATAFLK 175 (308)
T ss_pred HHHHHHH
Confidence 7666554
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.74 E-value=12 Score=36.88 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--CCC----hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 417 LEALRLFSEMKLEGVEVDFVTIINILPACVN--IGA----LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
++.+.+++.|.+.|.+-+..+|.+....... ..+ ...+..+++.|++...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4566778888888888888777654433322 111 2334444444444321100
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCC-h-HHHHHHHHHHHhcCC--HHHHHHHHH
Q 004856 491 ELFDEEKIDSKDIITWNSMISAYAKHGD----WSQCFKLYTQMKQSDVRPD-L-ITFLGLLTACVNAGL--VEEGRIIFK 562 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~g~--~~~a~~~~~ 562 (727)
.++-..+..++.. ..++ .+.++.+|+.+.+.|+..+ . .....++..+..... ...+.++++
T Consensus 138 ---------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 138 ---------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred ---------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2344455555443 2222 3566778888888787763 3 333333333322222 447778888
Q ss_pred HhHHhcCCCCChhHHHHHHHH
Q 004856 563 EMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 563 ~~~~~~~~~p~~~~~~~li~~ 583 (727)
.+.+. |+++...+|..+.-.
T Consensus 207 ~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHc-CCccccccccHHHHH
Confidence 88877 888887777665433
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.64 E-value=0.52 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 642 NYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 642 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888889999999988888743
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=33 Score=38.16 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
++..+....+.+.+..+.+..+-. ++..|..++..+...+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 455666777778888887777533 777888888888777766555555554443
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=5.7 Score=36.70 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=37.4
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhC-----CCCCCHhhHHHHHHH---HHHcCCHHHHHHHHHHHHccCCCC
Q 004856 578 ASMVNLLGRA-GHMDEARELVKDM-----PFKPDARVWGPLLSA---CKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 578 ~~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
..+.+.|... .++++|+..++.. +-+.+...-..++.+ -...+++.+|+.+|+++.....++
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455555544 5666777776665 122233333444443 457789999999999988754433
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.41 E-value=5.7 Score=41.18 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=33.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+...+.+.|+.++|++.++.+++..|. +-.....|+.++...+.+.++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444456666666666666666655543 234555666666666666666666665443
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.85 E-value=3.6 Score=35.81 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=56.8
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 575 EHYASMVNLL---GRAGHMDEARELVKDM-PFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 575 ~~~~~li~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
.+.+.|++.+ .+.++.+++..++..+ -.+|.......+-.. +...|++.+|+.+++.+.+-.|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444555444 3677899999999888 467776665555444 7889999999999999887777666555555555
Q ss_pred HHhcCCh
Q 004856 650 YAAAGKW 656 (727)
Q Consensus 650 ~~~~g~~ 656 (727)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 5555543
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.65 E-value=8.6 Score=34.69 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCCh----h
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL--ITFLGLLTACVNAGLVEEGRIIFKEMKESY--GYEPSQ----E 575 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~----~ 575 (727)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+++.+...+++..+.....++.... +-+++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35666777788888888888888887776555543 345667777777788888777777665431 111111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+|..|. +...|++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 222222 23467888888877766
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.62 E-value=47 Score=38.67 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=98.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCCCH--HHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCC--------Cc
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLE-----GVEVDF--VTIINILPACVNIG--ALEHVKYLHGYSMKLGL--------NS 468 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~--~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~--------~~ 468 (727)
++-+-..+.++.+=+-+++++... ..+.|. .-|...+...+..| -+++...+ ++++++ .|
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~---I~kh~Ly~~aL~ly~~ 933 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNY---IKKHGLYDEALALYKP 933 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHH---HHhcccchhhhheecc
Confidence 334445667777777777776632 122222 13444444444444 34444433 233332 23
Q ss_pred hHh----HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH--HH
Q 004856 469 LSS----VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT--FL 542 (727)
Q Consensus 469 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~ 542 (727)
+.. .|.+..+.+...+.+++|.-.|+...+ ..--+.+|...|++.+|+.+..+|.. .-+... -.
T Consensus 934 ~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 934 DSEKQKVIYEAYADHLREELMSDEAALMYERCGK-------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred CHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 333 334444445556777777777765432 11245677778888888887776643 123222 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
.|..-+...++.-+|-++..+.... | .--+..|++...+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5666777788888887777666532 2 234567778888888888877663
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.57 E-value=0.57 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556677778888888888887777763
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.32 E-value=38 Score=37.19 Aligned_cols=78 Identities=10% Similarity=-0.035 Sum_probs=42.9
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC---ChhHHHH
Q 004856 589 HMDEARELVKDMPFKPDARVWGPLLSACK----MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG---KWNGVAK 661 (727)
Q Consensus 589 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~ 661 (727)
+.+.+..++.+....-+......+...+. ...+.+.|...+.++.... ......++.++..-- .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 34455555555533334444444443322 1235777777777776555 566666666655431 1567777
Q ss_pred HHHHHHhC
Q 004856 662 MRTFLRDR 669 (727)
Q Consensus 662 ~~~~m~~~ 669 (727)
++++..+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 77776654
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.26 E-value=2.5 Score=36.07 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=36.9
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 586 RAGHMDEARELVKDM-PFKPDARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+.++.+++..+++.+ -..|+......+-.. +...|++++|.++++.+.+-.+..+..-..++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 356666666666666 244544433333332 5566666666666666665554333333344444444444
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.00 E-value=42 Score=37.34 Aligned_cols=86 Identities=22% Similarity=0.207 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCH--hhHHHHHHH-HHHcCC-----------HHHHHHHHHHHHc-------cCCC
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDA--RVWGPLLSA-CKMHSE-----------TELAELTAEKLIS-------MEPE 638 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~ll~~-~~~~g~-----------~~~A~~~~~~~~~-------~~p~ 638 (727)
...-+...|++++|..++.-++ +.|. ...|.+++- ...... ...|..+.+.... ..+.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 3445567888888888888775 2222 234444444 222222 3344444443322 1222
Q ss_pred CcchHHHHHH-----HHHhcCChhHHHHHHHHH
Q 004856 639 NAGNYVLLSN-----IYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 639 ~~~~~~~l~~-----~~~~~g~~~~a~~~~~~m 666 (727)
...++..|.. -+.+.|+|++|.+.++++
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445555544 367889999998887754
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.39 E-value=0.76 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777788888888888888885543
No 290
>PRK09687 putative lyase; Provisional
Probab=88.07 E-value=28 Score=34.17 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 572 PSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 572 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
++..+-..-+.++++.|+. +|...+-+. . .++ .....+.++...|+. +|...+.++.+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555552 233332222 2 122 122344445555553 45555555555444
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.86 E-value=29 Score=34.10 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHHH
Q 004856 649 IYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 649 ~~~~~g~~~~a~~~~~~ 665 (727)
.+.+.++|++|.+.++.
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 35556666666666653
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.70 E-value=6 Score=38.21 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=73.3
Q ss_pred hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 464 LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-----SK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 464 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
.|.+....+...++..-....++++++..+-+++.. .| ...+|-.+ +-.-++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 455555556666666666677888888888776652 12 22333322 23346889999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
|..+++.++..+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777654
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=1.5 Score=42.04 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=79.5
Q ss_pred HhhcCCCchhhHHHHHHHHHccCChhHHHHHHhcCCC-C------CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 004856 57 ILHGLHQNLILSSNLIDSYANLGLLSLSQQVFNSITS-P------NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYP 129 (727)
Q Consensus 57 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~------~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p 129 (727)
+..|......+...+|..-.....++++...+-+... | +... -+.++-+. .-+++.++.++..-.+.|+.|
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhcccc
Confidence 5567778888888888887777889999988877653 2 2221 12233332 337789999999999999999
Q ss_pred CcccHHHHHHHhhccCChhHHHHHHHHHHHHc
Q 004856 130 AEDTYPFVIRSCSCLLDFISGEKIHAQVVKLG 161 (727)
Q Consensus 130 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 161 (727)
|.+|++.+|..+.+.+++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877776554
No 294
>PRK09687 putative lyase; Provisional
Probab=87.29 E-value=31 Score=33.85 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=40.7
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
++..+-...+.++++.|+......+.+.+. .+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~--~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELK--KGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHc--CCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 344444555555666666433333333333 3332 23566777777774 677777777763 3566655555555
Q ss_pred HH
Q 004856 548 CV 549 (727)
Q Consensus 548 ~~ 549 (727)
|.
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 54
No 295
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.27 E-value=45 Score=35.67 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=124.1
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
++...|...++.-.+.|+.+...-+|++.... ..=...|-..+.-....|+.+-|..++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35567777777788889999888888875411 11234555555555556888888887776665433333443333333
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHhhHHH----HHHH-H
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEAR---ELVKDM-PFKPDARVWGP----LLSA-C 616 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~----ll~~-~ 616 (727)
-+-..|+.+.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. +++... ..+-+..+... .... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 456678999999999999986 3 653 33344566677889888888 555444 22222222222 2222 5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
.-.++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5678999999999999999999999999998887776633
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=54 Score=36.31 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=34.8
Q ss_pred hHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHH
Q 004856 269 SVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318 (727)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (727)
.++...|+.+.-.|++++|-...-.|...+..-|.--+..+...++....
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45566777777777788777777777777777777777666666655443
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.08 E-value=32 Score=33.78 Aligned_cols=18 Identities=11% Similarity=-0.224 Sum_probs=12.0
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 004856 616 CKMHSETELAELTAEKLI 633 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~ 633 (727)
+.+.++++.|...|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 556777777777776543
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.50 E-value=0.2 Score=43.66 Aligned_cols=85 Identities=16% Similarity=0.089 Sum_probs=53.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCc
Q 004856 136 FVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKS 214 (727)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~ 214 (727)
.++..+...+.+......++.+.+.+...+....+.|+.+|++. +..+..... ..... .....++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~--~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY--DPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT--TTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc--CCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 34556666666777777777777666566677888888888887 666666666 42222 3345566666666777
Q ss_pred hhHHHHHHHHH
Q 004856 215 EKSFELFKLMR 225 (727)
Q Consensus 215 ~~A~~~~~~m~ 225 (727)
++|.-++.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 67666666543
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.22 E-value=17 Score=35.89 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 417 LEALRLFSEMKLEGVEVDF--VTIINILPACVNIGA--LEHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
+.+..+|+.+.+.|...+. .....+|..+..... ...+..+++.+.+.|+++...+|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4556677777776655433 233334433333322 23566667777777777666665543
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.20 E-value=1.8 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
.|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555566666655555555
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.18 E-value=57 Score=36.32 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=14.6
Q ss_pred HHhcCCHHHHHHHHHhCCCCC
Q 004856 584 LGRAGHMDEARELVKDMPFKP 604 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~~~~p 604 (727)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457788888998888887777
No 302
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.91 E-value=64 Score=36.04 Aligned_cols=159 Identities=12% Similarity=0.029 Sum_probs=70.3
Q ss_pred HHHHHHHHH-hCCCchhHHHHHHHHHhCCCCCChh-----hHHHHHHHhcccCChhHHHHHHHHHHHhcCC----CChhH
Q 004856 201 WNSLISLAV-QNGKSEKSFELFKLMRMEGAEFDSG-----TLINLLRSTVELKSLELGRIVHCVAVVSDFC----KDLSV 270 (727)
Q Consensus 201 ~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 270 (727)
+-.+...+. ...+.++|...+.+.....-+++-. +-..++..+.+.+... |...++..++.--. +-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 333344433 4566677777666554322122211 1112233333333333 66666665543211 12222
Q ss_pred HhHH-HHHhhcCCChHHHHHHHhcCCC-----CC--eehHHHHHHHH--HhcCCchHHHHHHHHHHHcCC---------C
Q 004856 271 NTAL-LSMYSKLASLEDAKMLFDKMSD-----KD--RVVWNIMISAY--YQSGFPKESLELLMCMVRSGF---------R 331 (727)
Q Consensus 271 ~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~ 331 (727)
+.-+ +..+...++...|.+.++.+.. .| +..+-.++.+. .+.+.++++++.++++..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 2222 2222233667767766665532 11 12222233332 234556667666666633211 2
Q ss_pred CChhhHHHHHHHhh--cCCChHHHHHHHHHH
Q 004856 332 ADLFTAIAAVSSIS--TMKNIEWGKQMHANV 360 (727)
Q Consensus 332 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 360 (727)
|-..+|..+++.++ ..|+++.+.+.+..+
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445555555444 455555555554443
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.88 E-value=3.5 Score=39.82 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=26.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
++..+...|+.+.++..+++++..+|-+...|..++.+|.+.|+...|++.++.+.
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33334444444444444444444444444444444444555554444444444443
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.13 E-value=7.5 Score=33.28 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHhhHHHHH
Q 004856 539 ITFLGLLTA---CVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLL 613 (727)
Q Consensus 539 ~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll 613 (727)
...+.|+.. -...++.+++..++..|.- +.|+.. .-..-...+.+.|++++|..+|++....+ ....-..|+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344444443 3457899999999999984 566532 22233455678999999999999995443 333333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc
Q 004856 614 SACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
..|.....-..=....+.+++.
T Consensus 85 A~CL~al~Dp~Wr~~A~~~le~ 106 (153)
T TIGR02561 85 ALCLNAKGDAEWHVHADEVLAR 106 (153)
T ss_pred HHHHHhcCChHHHHHHHHHHHh
Confidence 4454433323333344444443
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.87 E-value=55 Score=34.35 Aligned_cols=167 Identities=8% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLV 554 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 554 (727)
++++.++......-.+.+-.+|....-+-..+-.++.+|..+ ..++-..+|+++.+.. -|.+....-+..+...++.
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEkik~ 147 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKIKK 147 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHhch
Confidence 333334433333333333333332223444555555666655 4455556666666532 2333333333333333556
Q ss_pred HHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhhHHHHHHHHHHcCCHHH
Q 004856 555 EEGRIIFKEMKESYGYEPS------QEHYASMVNLLGRAGHMDEARELVKDM----PFKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 555 ~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
+.+..+|.++..+ +.|. .++|..|+... ..+.+....+..+. +..--.+.+.-+..-|....++.+
T Consensus 148 sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 148 SKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred hhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 6666666665543 2221 12344444322 22344444444433 222223334444444556666777
Q ss_pred HHHHHHHHHccCCCCcchHHHHHH
Q 004856 625 AELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
|+++...+++.+..|..+...++.
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHH
Confidence 777777666666555544444443
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.83 E-value=60 Score=34.80 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=71.7
Q ss_pred ChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCee---hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004856 267 DLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRV---VWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSS 343 (727)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 343 (727)
+...|+.+|.---...+.+.+..+++.+...=+. -|-....-=.+.|..+.+.++|++-+. |++-....|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 3444555554444444445555555555432222 233333333456777777777777664 244444444444433
Q ss_pred hh-cCCChHHHHHHHHHHHHh-CCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 004856 344 IS-TMKNIEWGKQMHANVLRN-GSD-YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSS 405 (727)
Q Consensus 344 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 405 (727)
+. ..|+.+.....|+.+... |.. .....|...|..-..++++.....+++++.+-....++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 32 455666666666666554 322 133445666666666666777767766665543333333
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.77 E-value=11 Score=29.90 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556677777788899999999999999999999999999999988744 33336766654
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.77 E-value=70 Score=35.49 Aligned_cols=75 Identities=8% Similarity=0.107 Sum_probs=45.5
Q ss_pred hhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhc
Q 004856 166 DDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTV 244 (727)
Q Consensus 166 ~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 244 (727)
..++...|+.+.-. |++++|-.. ..|...+..-|.--+..++..++......+ +....-+.+...|..+|..+.
T Consensus 392 ~kv~~~yI~HLl~~--~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L 466 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFE--GKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFL 466 (846)
T ss_pred HHHHHHHHHHHHhc--chHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHH
Confidence 34566666666666 777777777 777777777777777777766665543322 222222234556666666555
Q ss_pred c
Q 004856 245 E 245 (727)
Q Consensus 245 ~ 245 (727)
.
T Consensus 467 ~ 467 (846)
T KOG2066|consen 467 A 467 (846)
T ss_pred H
Confidence 4
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.66 E-value=73 Score=35.66 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=13.8
Q ss_pred hcCCChHHHHHHHhcCCC
Q 004856 279 SKLASLEDAKMLFDKMSD 296 (727)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~ 296 (727)
-..+++++|.+.+..++-
T Consensus 501 e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHhcCHHHHHHHHhcCCH
Confidence 345788888888888874
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.24 E-value=17 Score=32.79 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=51.9
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCC
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSE 621 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~ 621 (727)
...|++++|..-|...... +++. ...|..-..++.+.+.++.|++-..+. .+.|... ...--..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 4455555555555555532 1221 123333344455556666665555444 3334221 11111223666778
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
+++|+.-|+++++.+|....+-...+.
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 888999999999888866555444443
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.16 E-value=9.1 Score=34.52 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
.+..+..-|.+.|+.++|.+.|.++.+. ...+. ...+-.+|+...-.|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666677777777777777776654 33333 334555666666666666666666555
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.77 E-value=1.5 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=18.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677888888888888887765
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.67 E-value=3.7 Score=40.02 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=58.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
-.+-|.+.|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|+.-....... | ...+.+|.|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR 171 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRR 171 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHH
Confidence 35678999999999999998887 567 9999999999999999988887766665532 1 2345666665
Q ss_pred CCHHHHHHHHHh
Q 004856 588 GHMDEARELVKD 599 (727)
Q Consensus 588 g~~~~A~~~~~~ 599 (727)
|...+++..+.+
T Consensus 172 ~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 172 MQARESLGNNME 183 (536)
T ss_pred HHHHHHHhhHHH
Confidence 544444444333
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.35 E-value=20 Score=28.24 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=41.6
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.+...|++++|..+.+... .||...|-++-. .+.|-.+++..-+.+|..+| .|...+|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC--YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHccchHHHHHHhcCCCC--CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3566788888888888776 888888876643 36677777777777777776 55554443
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.31 E-value=12 Score=29.32 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++++..+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445566677777778899999999999999999999999999998886533 24446665553
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.22 E-value=32 Score=30.46 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (727)
+..+++.+...|++-+|.+..+.....+...-..++.+-.+.++..-
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 33444555566666666666655433333333344444444444433
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.95 E-value=32 Score=32.59 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCChHHHHHHHhcCCC--C-----CeehHHHHHHHHHhcCCchHHHHHHHHHHH---cCCC--CChhhHHHHHHHhhcCC
Q 004856 281 LASLEDAKMLFDKMSD--K-----DRVVWNIMISAYYQSGFPKESLELLMCMVR---SGFR--ADLFTAIAAVSSISTMK 348 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~~ 348 (727)
..++++|..-|+++.+ + .-.+.-.+|..+.+.|++++.+..|.+|.. ..+. -+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777766543 1 223445677888888888888888888743 1111 23455666666666666
Q ss_pred ChHHHHHHHHHHHHhC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------C-------hhHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNG-SDYQV----SVHNSLIDMYCECEDLNCARKIFDSVKTK--------T-------VVSWSSMIK 408 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~ 408 (727)
+.+.-..+++.-++.- -..+. .+-+.|...|...|.+.+..+++.++... | ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6555555554333210 00011 12234555555556665555555544311 0 123444455
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 004856 409 GYVTHDQSLEALRLFSEMK 427 (727)
Q Consensus 409 ~~~~~g~~~~A~~~~~~m~ 427 (727)
.|....+-.+-..++++..
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 5555555555555555443
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.69 E-value=22 Score=28.07 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004856 376 IDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTII 439 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 439 (727)
+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345678899999999999999999999987755 36677777777777887776 45555553
No 319
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.35 E-value=1.6 Score=26.64 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 004856 576 HYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A 593 (727)
.|..|...|...|++++|
T Consensus 15 a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHCcCHHhh
Confidence 444444444444444443
No 320
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.98 E-value=3.9 Score=37.82 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=21.3
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+..+++.+..-..+++++.|+.......++........+++|+..+.+
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 321
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.55 E-value=38 Score=30.05 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCC
Q 004856 319 LELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE--DLNCARKIFDSVK 396 (727)
Q Consensus 319 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 396 (727)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.+ +++.++-+|.......+-.+.... -.+-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4555666777888888888888888888887654433 344555554433332222221111 1334455555544
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004856 397 TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMK 463 (727)
Q Consensus 397 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 463 (727)
. .+..++..+...|++-+|+++.++.... +......++.+..+.++...-..+++...+
T Consensus 90 ~----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3455667788899999999888775322 112223455665555555544444444443
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.16 E-value=3.9 Score=24.53 Aligned_cols=26 Identities=15% Similarity=0.512 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555544
No 323
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=60 Score=34.73 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=33.4
Q ss_pred CEEEEEEeCC-CCCcChHHHHHHHHHH--HHHHHcccccCc
Q 004856 684 KLVHEFWAAD-QSHPQADAIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 684 ~~~~~f~~~d-~~hp~~~~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
..+.||+|+| ++|+++.....+++.+ .+++..+|+...
T Consensus 259 rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~ 299 (620)
T COG3914 259 RLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGP 299 (620)
T ss_pred ceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCC
Confidence 4589999999 9999999999999999 669999887663
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.37 E-value=9.4 Score=34.69 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=55.6
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC----CCcchHHHHHHHHHhcCChhH
Q 004856 585 GRAGHMDEARELVKDMPFKP--DARVWGPLLSACKMHSETELAELTAEKLISMEP----ENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~ 658 (727)
.+.|+ ++|.+.|-++...| +....-.-+..+....|.+++++++.+++++.+ -|+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45565 67787777774444 333444445557778899999999999998542 268899999999999999988
Q ss_pred HH
Q 004856 659 VA 660 (727)
Q Consensus 659 a~ 660 (727)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.10 E-value=11 Score=25.83 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...++-++.+.|++++|.++.+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456777899999999999999988776
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.04 E-value=83 Score=33.08 Aligned_cols=161 Identities=12% Similarity=0.158 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
.|....-+++..+..+-...-...+..+|.+.| .+...|..++.+|... ..+.-..+|+++.+- .+ .|...-..|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df-nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF-NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc-hhHHHHHHH
Confidence 366667788889999888999999999999954 6888899999999988 557788888888764 22 345555667
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCC---C---HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHHH
Q 004856 581 VNLLGRAGHMDEARELVKDM--PFKP---D---ARVWGPLLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNIY 650 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~--~~~p---~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 650 (727)
++.|.+ ++...+..+|.++ .+-| + ...|.-+... .-.+.+....+..++...... -...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777766 8889999999887 2222 1 1245555432 133555555555555442211 223444555678
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
....+|++|+++...+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 8899999999999865544
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.58 E-value=34 Score=35.34 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=58.7
Q ss_pred HcCChHHHHH-HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 004856 515 KHGDWSQCFK-LYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 515 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 593 (727)
..|+.-.|-+ ++.-+....-.|+.+-.. ...+.+.|.++.+.+.+..... -+.....+..++++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 4455554443 333333332233333322 2334566666666666665543 2333444556666666666666666
Q ss_pred HHHHHhC-CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 594 RELVKDM-PFK-PDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 594 ~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
...-+-| +.+ -++.....-.......|-++++.-.+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6666555 111 12222222222244555566666666666666554
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.95 E-value=32 Score=36.69 Aligned_cols=149 Identities=14% Similarity=0.061 Sum_probs=96.2
Q ss_pred hcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 482 KCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
-.|+++.|..++..++ ...-+.++.-+.+.|-.++|+++ .+|+.-- .....+.|+++.|.++.
T Consensus 598 mrrd~~~a~~vLp~I~-----k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la 660 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-----KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLA 660 (794)
T ss_pred hhccccccccccccCc-----hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHH
Confidence 3467777766655544 12334456666777777777654 3443221 12234678888888776
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+....|.
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~- 726 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL- 726 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch-
Confidence 5443 45678889999999999999999998763 356677777777777766666555555444322
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 004856 642 NYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 642 ~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
-..+|...|+++++.+++-.
T Consensus 727 ----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHHcCCHHHHHHHHHh
Confidence 22356778888888887753
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.92 E-value=52 Score=30.37 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMV 581 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 581 (727)
.+..++.+.+.+...+++...++-++.. +.|..+-..++..++-.|+|++|..-++.... +.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 3445677788888999999888877753 33666777888889999999999887776652 3443 45666666
Q ss_pred HHHHhcCCHHHHH-HHHHhC--C---CCCCHhhHHH-HHHH--HHHcCCHHHHHHHHHHHHccCCCC
Q 004856 582 NLLGRAGHMDEAR-ELVKDM--P---FKPDARVWGP-LLSA--CKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 582 ~~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~-ll~~--~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
++ +.++ ++|.-- + ..|.+ .|-. ++.+ |...|.-+....+-+.+++-.|..
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p-~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSP-EWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCH-HHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 54 2222 233221 1 11333 4444 4444 334445555666777777766643
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.88 E-value=3.9 Score=25.97 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778899999999999999998887553
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.39 E-value=1.5 Score=37.97 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=51.6
Q ss_pred HHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHH
Q 004856 239 LLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318 (727)
Q Consensus 239 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (727)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455555666666666777777666556677778888888887777777777763322 3334455556666666666
Q ss_pred HHHHHHH
Q 004856 319 LELLMCM 325 (727)
Q Consensus 319 ~~~~~~m 325 (727)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6655554
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.29 E-value=48 Score=29.34 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=51.3
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHH---HHH--HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWN---SMI--SAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.....|+...|...|+++....|-+.... .|= -.+..+|-+++.....+-+-..+-+-....-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 34566777777777777554322222221 111 1245667777777666665544422233445566666677788
Q ss_pred HHHHHHHHHHhHHh
Q 004856 554 VEEGRIIFKEMKES 567 (727)
Q Consensus 554 ~~~a~~~~~~~~~~ 567 (727)
+..|.+.|..+...
T Consensus 183 ~a~A~~~F~qia~D 196 (221)
T COG4649 183 FAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHcc
Confidence 88888888777755
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.80 E-value=55 Score=29.70 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHH
Q 004856 521 QCFKLYTQMKQSDVRPDLITFL--GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-----SMVNLLGRAGHMDEA 593 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 593 (727)
+......++....-.....++. .+...+...+++++|...++..... |....+. .|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455556665532111112222 2345577888999999888876632 2222332 355677788999999
Q ss_pred HHHHHhCCCCCCHhh--HHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 594 RELVKDMPFKPDARV--WGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 594 ~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
+..++... .++-.. ...-...+...|+-++|...|+++++.++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 99988763 122111 22223448899999999999999998764
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.55 E-value=3 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 642 NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 642 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++..++.++.+.|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888999999999999999988765
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.55 E-value=72 Score=30.93 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=49.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
..|...|.+.+|.++.++++.++|-+...+..|...|...|+--+|...++++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4488999999999999999999999999999999999999998888888877753
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.53 E-value=4.7 Score=23.15 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555566666666666555554
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.45 E-value=5 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788999999999999999999987653
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.11 E-value=2.2e+02 Score=36.40 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----C-----CCCCHh
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-----P-----FKPDAR 607 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~-----~~p~~~ 607 (727)
..+|....+.+.++|+++.|...+-...+. + .| ..+--....+...|+-..|+.++++. + .+|.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 456888888888888888888777666543 2 33 34455567778888888888888765 1 111122
Q ss_pred hHHHHHHH--------H-HHcC--CHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 608 VWGPLLSA--------C-KMHS--ETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 608 ~~~~ll~~--------~-~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.-|.++.. | ...+ ..+..+..|..+.+..|.....|..++
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 22322222 1 1222 334456678888888886666666555
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.95 E-value=3.9 Score=24.26 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=21.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..++.+.|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445577788888888888888888875
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.47 E-value=13 Score=29.06 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHH
Q 004856 112 YEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK 159 (727)
Q Consensus 112 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 159 (727)
.-++.+-++.+....+.|++....+.|++|.+.+|+..|..+++.+..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335556666667778889999999999999999999999999987763
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.26 E-value=6.7 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMK 530 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~ 530 (727)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555543
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.09 E-value=1.2e+02 Score=33.35 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=70.2
Q ss_pred HcCChHHHHHHHHHHHH-------CCCCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 515 KHGDWSQCFKLYTQMKQ-------SDVRPDLITFLGLLTACVNAG-----LVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
...+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++....+. | .|+....-....
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 34455555555555544 33 2223444555555432 445566666666543 3 233322222222
Q ss_pred HHHh-cCCHHHHHHHHHhCCC--CCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH--HHhcCC
Q 004856 583 LLGR-AGHMDEARELVKDMPF--KPDARVWGPLLSA--CKMHSETELAELTAEKLISMEPENAGNYVLLSNI--YAAAGK 655 (727)
Q Consensus 583 ~~~~-~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~ 655 (727)
.... ..+...|.++|..+.. .++...+.++.-. .....+.+.|..+++++.+.++ +.+...+... +.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcc-cc
Confidence 2222 2345667777766621 2222222222111 1133467777777777777663 3333333322 223 66
Q ss_pred hhHHHHHHHHHHhCCCc
Q 004856 656 WNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 656 ~~~a~~~~~~m~~~~~~ 672 (727)
++.+.-.+..+.+.|.+
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 66666666666665543
No 343
>PRK10941 hypothetical protein; Provisional
Probab=76.04 E-value=22 Score=34.53 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+.+-.++.+.++++.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445556889999999999999999999998888888888999999999998887766554
No 344
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.09 E-value=7 Score=26.83 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHH
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYV 644 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (727)
+.-++.+.|+++.|....+.+++.+|+|..+-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 334578999999999999999999998765443
No 345
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.96 E-value=42 Score=26.94 Aligned_cols=87 Identities=7% Similarity=0.027 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004856 348 KNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK 427 (727)
Q Consensus 348 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 427 (727)
...++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345666666666665543 223333344456778899999955555566678888876654 47788888888888877
Q ss_pred HCCCCCCHHHH
Q 004856 428 LEGVEVDFVTI 438 (727)
Q Consensus 428 ~~g~~p~~~t~ 438 (727)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3444444
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.35 E-value=2.4 Score=41.38 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 004856 587 AGHMDEARELVKDM-PFKPDA-RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
.|.+++|++.+... ...|.. ..|..--+++.+.+....|++-+..+++++|+...-|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45667777666655 344433 2333333446677777788888888888888877778777778888888888888888
Q ss_pred HHHhCCCcc
Q 004856 665 FLRDRGLKK 673 (727)
Q Consensus 665 ~m~~~~~~~ 673 (727)
...+.+...
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 877776643
No 347
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=73.07 E-value=68 Score=31.17 Aligned_cols=111 Identities=12% Similarity=0.141 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHH-CCCCCChHHHHHHHHHHHh-c-CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004856 519 WSQCFKLYTQMKQ-SDVRPDLITFLGLLTACVN-A-GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595 (727)
Q Consensus 519 ~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 595 (727)
..+|+.+|+...- ..+--|......+++.... . .....-.++.+.+...++-.++..+...+++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4445555542211 1133344445555554443 1 12222233334444444556666667777777777777777777
Q ss_pred HHHhCC----CCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 596 LVKDMP----FKPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 596 ~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
+++... ...|...|..++..-...||......+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 776651 2235566777777777777655444443
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.89 E-value=6.6 Score=22.10 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 004856 579 SMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~ 598 (727)
.+...+...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.83 E-value=89 Score=29.78 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhcCC
Q 004856 382 CEDLNCARKIFDSVKTK-------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE---GV--EVDFVTIINILPACVNIG 449 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~ 449 (727)
..++++|..-|+++.+- .--+...+|..+.+.+++++.+..+++|..- -+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44677777777665431 2234456788888889999888888887541 11 223456677777666655
Q ss_pred ChHHHHHHHHHHHH----hC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC------CCC-------HHHHHHHHH
Q 004856 450 ALEHVKYLHGYSMK----LG-LNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID------SKD-------IITWNSMIS 511 (727)
Q Consensus 450 ~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~-------~~~~~~li~ 511 (727)
+.+.-..+++.-.+ .. -..--.+.+-|-..|...|.+.+..+++.++..+ .-| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555555443322 11 0111123344556677777777777777764322 111 245666677
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHH-----HhcCCHHHHHHHHHHhHHhcCC--CCChh---HHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSD-VRPDLITFLGLLTAC-----VNAGLVEEGRIIFKEMKESYGY--EPSQE---HYASM 580 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~~~---~~~~l 580 (727)
.|....+-.+-..+|++.+.-. --|-+.. ..+|+-| .+.|.+++|-.-|=++.+.|.- .|... -|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8887777777777787765421 2233333 3344444 3567788776554444433321 22222 35556
Q ss_pred HHHHHhcCC----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 581 VNLLGRAGH----MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 581 i~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
.+++.+.|- -.+|.- ....|.......++.+|.. ++..+-++++..
T Consensus 279 ANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 677766652 111110 0234556677778887754 455555544443
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.10 E-value=16 Score=33.48 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+.-+..+.+.+.+.+|+...++- ..+| |...-..++..++..|++++|..-++-+-.+.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44466777888888888877655 5566 445666777788899999999998888888888654
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.91 E-value=18 Score=31.11 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=65.3
Q ss_pred HhhcCCCch--hhHHHHHHHHHccCChhHHHHHHhcCC---------CCCcchHHHHHHHHHcCCC-chHHHHHHHHHHh
Q 004856 57 ILHGLHQNL--ILSSNLIDSYANLGLLSLSQQVFNSIT---------SPNSLLYGTILKNLSKFGE-YEKTLLVYKQMAL 124 (727)
Q Consensus 57 ~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~n~li~~~~~~g~-~~~a~~~~~~m~~ 124 (727)
.+.+..++. ..-|++++-.+..+++..-..+++.+. ..+-.+|++++.+.++... ---+..+|..|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 333444443 445777777777777777777776664 2455689999999977766 4568889999998
Q ss_pred CCCCCCcccHHHHHHHhhccC
Q 004856 125 QSMYPAEDTYPFVIRSCSCLL 145 (727)
Q Consensus 125 ~g~~p~~~t~~~ll~~~~~~~ 145 (727)
.+.+++..-|..+|++|.+-.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCC
Confidence 889999999999999886653
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.73 E-value=21 Score=36.79 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=88.0
Q ss_pred HhcCCHHHHH-HHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 004856 481 AKCGCIEMAG-ELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 481 ~~~g~~~~A~-~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 557 (727)
...|++..|- ++|..+... .|+.+.. ....+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3457776654 455545443 3444433 334467789999999988776543 445677888999999999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHH--HHHcCC
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF-KPDARVWGPLLSA--CKMHSE 621 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~--~~~~g~ 621 (727)
..+-+.|... .++ +.++...-...--..|-++++.-.+++. .+ .|...-|-.++.. |...|+
T Consensus 377 ~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 9999888864 332 2333222222223457788888888877 33 3555667777766 555554
No 353
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.43 E-value=63 Score=30.41 Aligned_cols=54 Identities=11% Similarity=-0.050 Sum_probs=43.6
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...|++-++++....++...|.+..+|..-+.+....=+..+|..-+..+.+.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 456778888888888888889988888888888888777777888777766655
No 354
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.38 E-value=74 Score=28.24 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHH-
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASM- 580 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l- 580 (727)
..|..-+. +++.+..++|+.-|..+.+.|...-++ ............|+...|...|.++-.. .-.|.+. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34444333 367788899999999998876443222 2223344466789999999999998755 3333322 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHhCC--CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 581 -VNLLGRAGHMDEARELVKDMP--FKPD-ARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 581 -i~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
...+...|.+++.....+-+. ..|- ...-..|.-+-.+.|++..|...|.++..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 234567888888888888773 2332 23445566667789999999999988876
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.90 E-value=1.8e+02 Score=32.57 Aligned_cols=93 Identities=9% Similarity=-0.135 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCCcchHHHHHHHHHhcCChh
Q 004856 581 VNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISME---PENAGNYVLLSNIYAAAGKWN 657 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 657 (727)
+..+...|+..+|...+..+....+......+.......|..+.++....+....+ -.-+..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 45566778888888888776323455555555555678888888887776543311 112345666666666655666
Q ss_pred HHHHHHHHHHhCCCcc
Q 004856 658 GVAKMRTFLRDRGLKK 673 (727)
Q Consensus 658 ~a~~~~~~m~~~~~~~ 673 (727)
.+.-+--...+.++.+
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5553322233555543
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.82 E-value=42 Score=30.62 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc--CCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 520 SQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY--GYEPSQEHYASMVNLLGRAGHMDEAR 594 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~ 594 (727)
++|.+.|-++...+.--++.....|...|. ..+.++++.++....+.+ +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455566655555443333333333333333 455666666666555432 11345666666666666666666553
No 357
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.59 E-value=1.3e+02 Score=30.81 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=28.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHhH
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV-NAGLVEEGRIIFKEMK 565 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~ 565 (727)
|..+.+.|-+.-|+++.+-+......-|+......|..|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3455566666666666666665321113333334444433 4455555555555443
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.28 E-value=1.5e+02 Score=31.19 Aligned_cols=197 Identities=8% Similarity=0.020 Sum_probs=85.6
Q ss_pred HHHHhCCCCCChhh--HHHHHHHhcccCChhHHHHHHHHHHHhcCCCChh--HHhHHHHHhhcCCChHHHHHHHhcCCCC
Q 004856 222 KLMRMEGAEFDSGT--LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFDKMSDK 297 (727)
Q Consensus 222 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~ 297 (727)
+.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..++.. ....-+...++.|+.+....+++.-...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 33334455444322 223344444555544 333334444433321 1122334445667777666666543321
Q ss_pred ----CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhh--HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChh-
Q 004856 298 ----DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFT--AIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVS- 370 (727)
Q Consensus 298 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 370 (727)
+..-++. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+..+. +.+.|..++..
T Consensus 95 ~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~~~d 165 (413)
T PHA02875 95 DDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLDIED 165 (413)
T ss_pred cccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCCCCC
Confidence 1111222 2233344543 45555556666654322 1223444445566544433 33445433221
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004856 371 -VHNSLIDMYCECEDLNCARKIFDSVKTKTVVS---WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF 435 (727)
Q Consensus 371 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 435 (727)
...+.+...+..|+.+-+.-+++.-...+... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 12223344455677776666666544332211 112333233445443 44445556666554
No 359
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=1.2e+02 Score=32.59 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=67.7
Q ss_pred HHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 647 al~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 456788888877766533 567788888888888888888888877654 4466666667777654444
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 560 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
+-....+. |. .| .-.-+|...|+++++.+++.+-+
T Consensus 714 la~~~~~~-g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 714 LASLAKKQ-GK-NN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHhh-cc-cc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 44444433 32 22 22345566788888888887664
No 360
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.58 E-value=4 Score=41.96 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=63.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCC
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS-MVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSE 621 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~ 621 (727)
+.-+...+.++.|..++.++.+ +.||...|-. =..++.+.+++..|+.=+.++ ...|... .|.--..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4455566788888888888884 4776554433 336677788877777555444 5556443 33333345777778
Q ss_pred HHHHHHHHHHHHccCCCCcchH
Q 004856 622 TELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
+.+|...++....+.|+++.+-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHH
Confidence 8888888888888888665443
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.18 E-value=35 Score=30.45 Aligned_cols=60 Identities=13% Similarity=0.282 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC-----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 520 SQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGL-----------VEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~-----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
++|+.-|++.+. +.|+ ..++..+..++...+. +++|...|+.... .+|+..+|..-+++.
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 344444555555 6776 4677777777765432 3334444444442 356666666555544
No 362
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.08 E-value=31 Score=27.41 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 601 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.+-|++.+..+.+.+|++.+|+..|+++++-+...-.+....|-.++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 56788888889999999999999999999888765443333555443
No 363
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.55 E-value=61 Score=27.91 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCcccHHHHHHHHHhCCC-chhHHHHHHHHHhCCCCCChhhHHHHHHHhcccC
Q 004856 196 DLKSRWNSLISLAVQNGK-SEKSFELFKLMRMEGAEFDSGTLINLLRSTVELK 247 (727)
Q Consensus 196 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 247 (727)
.+-.+|+.++.+.++..- ---+..+|.-|++.+.+++...|..++.+|.+..
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 344568888888866555 3456789999998889999999999999987753
No 364
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.43 E-value=99 Score=34.17 Aligned_cols=183 Identities=19% Similarity=0.221 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHhcCCChHHHHHHHHHHHH-hC-CCc
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT----------IINILPACVNIGALEHVKYLHGYSMK-LG-LNS 468 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~~~~~~a~~~~~~~~~-~~-~~~ 468 (727)
.+-..++..|-...+++..+++.+.++.. ||..- |.-.++---+-|+-++|....--+.+ .| +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556677777788888888888888763 44322 22222222334555555554333332 22 222
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH---HHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT---FLGLL 545 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll 545 (727)
| +||-+|++- ..|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+
T Consensus 279 D---------m~Cl~GRIY------KDmF-----------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL 330 (1226)
T KOG4279|consen 279 D---------MYCLCGRIY------KDMF-----------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLL 330 (1226)
T ss_pred c---------eeeeechhh------hhhh-----------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHH
Confidence 2 344444421 1111 11234445567778888888877 6786543 44444
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 004856 546 TACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 625 (727)
.+-.+ .++...+ +..- | ..|-..++|.|.+++-.++++-. ..+.+-.-.+|+.+|
T Consensus 331 ~aaG~--~Fens~E----lq~I-g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~ka 385 (1226)
T KOG4279|consen 331 RAAGE--HFENSLE----LQQI-G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKA 385 (1226)
T ss_pred HHhhh--hccchHH----HHHH-H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHH
Confidence 43222 1222222 1111 2 23445678899988888887643 234445567789999
Q ss_pred HHHHHHHHccCCCC
Q 004856 626 ELTAEKLISMEPEN 639 (727)
Q Consensus 626 ~~~~~~~~~~~p~~ 639 (727)
++..+++.++.|+.
T Consensus 386 iqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 386 IQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHhccCCce
Confidence 99999999999854
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.09 E-value=14 Score=24.27 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 644 VLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 644 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..|+.+|...|+.+.|+++++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467889999999999999999887543
No 366
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=63.85 E-value=31 Score=35.49 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=25.2
Q ss_pred HHHHHHHCCCCCCHHHH--HHHHHHHhcCCChHHHHHHHH
Q 004856 422 LFSEMKLEGVEVDFVTI--INILPACVNIGALEHVKYLHG 459 (727)
Q Consensus 422 ~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~ 459 (727)
+.+.+.+.|..++..++ ++.+.-|+..|.++-...+..
T Consensus 165 I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 165 IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 34455566777777666 677888888888766555443
No 367
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=1.8e+02 Score=29.69 Aligned_cols=121 Identities=15% Similarity=0.241 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC------CCHhh--HHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC----cch
Q 004856 578 ASMVNLLGRAGHMDEARELVKDMPFK------PDARV--WGPLLSACKMHSETELAELTAEKLISME---PEN----AGN 642 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~~~~------p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~ 642 (727)
..|...+-.+|+.++|.+++.+.+.. -.... ..--+..|...+|+-.|.-+.+++.... |+- ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 34667777889999999888877432 11111 1112455888999999999888887632 221 245
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcC
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQ 698 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~ 698 (727)
|..++....+.+.+=++.+.++..-+.|-.++....|+..-..+..|+.--+..+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dne 270 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNE 270 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcH
Confidence 77888888899999999999999988877666556676655555555554433333
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.51 E-value=16 Score=28.55 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHHHHhcCC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 655 (727)
....+...+...|+++.|...+-.+++.++. +..+-..++.++...|.
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3444444455566666666655555555443 23444455555555554
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.47 E-value=77 Score=25.51 Aligned_cols=58 Identities=22% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF 541 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 541 (727)
.+...|++++|.. .......||...|-++-. .+.|-.+++...+.++..+| .|....|
T Consensus 49 sLmNrG~Yq~ALl--~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 49 SLMNRGDYQEALL--LPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHTT-HHHHHH--HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHhhHHHHHHHH--hcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4566777777732 222222678777766533 46777777777777776655 4433333
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.26 E-value=42 Score=28.31 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-C-CCCCH-hhHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 571 EPSQEHYASMVNLLGRAGHMD---EARELVKDM-P-FKPDA-RVWG-PLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~-~~p~~-~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.++..+--.+..++.+..+.+ +-+.++++. + -.|+. .-+- -|.-++.+.++++++.++.+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455555556666666655433 444555554 2 22322 1222 223347777777778777777777777544
No 371
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.14 E-value=4.4e+02 Score=34.07 Aligned_cols=64 Identities=5% Similarity=-0.011 Sum_probs=55.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 606 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
..+|......++..|.++.|....-++.+..+ +..+.-.+..+...|+...|..+++...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 35788888889999999999999888888774 78899999999999999999999998876644
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.91 E-value=16 Score=27.45 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=34.5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHH---HHHHHHHhcCChhHHHHH
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYV---LLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 662 (727)
....+.+.|+..++++++..++.+.-|. .|+.+|...|++++.+++
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788899999999987766555555 556678888888887765
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.70 E-value=21 Score=37.85 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=63.2
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHHcCCHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM-P-FKPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
...|+...|...+.... ...|. ......|...+.+.|...+|-.++.+. . ....+.++.++.+++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44567777777766655 33443 223445666667777777777776654 2 12344566677777777778888
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHH
Q 004856 625 AELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
|++.++.+++++|+++..-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 8888888888888777666655444
No 374
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.44 E-value=2.1e+02 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=33.6
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 004856 402 SWSSMIKGYVT---HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG 449 (727)
Q Consensus 402 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 449 (727)
.+..++.++.+ .++.+.|+..+.+|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555554 4789999999999999998888666555555554444
No 375
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.54 E-value=2.1e+02 Score=29.94 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=10.3
Q ss_pred ccCChhHHHHHHhcCCCCC
Q 004856 77 NLGLLSLSQQVFNSITSPN 95 (727)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~ 95 (727)
+.|+++-+..+++.-..++
T Consensus 11 ~~g~~~iv~~Ll~~g~~~n 29 (413)
T PHA02875 11 LFGELDIARRLLDIGINPN 29 (413)
T ss_pred HhCCHHHHHHHHHCCCCCC
Confidence 4566666666665443333
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.04 E-value=1.7e+02 Score=28.57 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEM 564 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 564 (727)
+.....|...|.+.+|.++-++.+... +.+...+-.++..+...|+--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344456667777777777777776632 225666667777777777755555555444
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.01 E-value=18 Score=32.20 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC----hhHHHHHHHHHH
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAGK----WNGVAKMRTFLR 667 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 667 (727)
+++|+.-+++++.++|+...++..++++|...+. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5567777788888899888999999988877653 334445555443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.48 E-value=25 Score=26.42 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARE 595 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 595 (727)
....++|+..|+...++..-.|+. .++..|+.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554432111221 134444455555555444443
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.55 E-value=1.5e+02 Score=30.60 Aligned_cols=52 Identities=6% Similarity=0.010 Sum_probs=27.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHHh--cCCHHHHHHHHHHhHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDLI--TFLGLLTACVN--AGLVEEGRIIFKEMKE 566 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~--~g~~~~a~~~~~~~~~ 566 (727)
...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666777777666665 444433 23333333332 3345566666665553
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=84 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHH-------HHHHHHHHHhcCCHHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT-------FLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~ 561 (727)
+.+-..+.+++++|+..+.+...+|+..|..+ ...+...|...|++..-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44555678899999999999999988776543 455666677777765544443
No 381
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.28 E-value=59 Score=30.40 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=36.8
Q ss_pred HHHHHHcCCHH-------HHHHHHHHHHccC--CC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 613 LSACKMHSETE-------LAELTAEKLISME--PE----NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 613 l~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...|+..|+.+ .|...|+++.+.+ |. .......++.++.+.|+.++|.+.+.++...+
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33466666644 3444445554432 21 23455678888999999999999998887653
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.60 E-value=1.2e+02 Score=29.33 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=52.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH--
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQS--DVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG-- 585 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 585 (727)
|.+++..+++.+++...-+--+. .++| ...-.-|-.|++.+....+.++-...... .-.-+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 66777888888777654433221 1233 33444455677888888777777766643 11122334666666555
Q ss_pred ---hcCCHHHHHHHHHhC
Q 004856 586 ---RAGHMDEARELVKDM 600 (727)
Q Consensus 586 ---~~g~~~~A~~~~~~~ 600 (727)
=.|.+++|++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 468888888888443
No 383
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.17 E-value=1.2e+02 Score=28.53 Aligned_cols=119 Identities=8% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKDI-ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a 557 (727)
|....+++.|...+.+.....|++ .-|+.-+..+.+..+++.+..--++.++ +.||.+ ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 555667788888777754446766 4456677777788888888777777776 677754 344556666677778888
Q ss_pred HHHHHHhHHh---cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 558 RIIFKEMKES---YGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 558 ~~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+..+.+.... ..+.|.......|.++--+.=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8877776322 134444555555555443333444455555544
No 384
>PRK12798 chemotaxis protein; Reviewed
Probab=57.91 E-value=2.3e+02 Score=29.26 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=101.2
Q ss_pred cCCHHHHHHHHHhccCC--CCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHH
Q 004856 483 CGCIEMAGELFDEEKID--SKDIITWNSMISAY-AKHGDWSQCFKLYTQMKQSDVRPDL----ITFLGLLTACVNAGLVE 555 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 555 (727)
.|+-+++.+.+..+... .+....+-.|+.+- ....+..+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58888888888876533 34556666666554 455689999999998876 34542 23444455677889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHY-ASMVNLLGRAG---HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
++..+-.....+|...|=...| ..++..+.+.+ ..+.-..++..|.-.--...|..+-..-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888877777776555544333 33333444333 3455556666663222334777777778889999999999999
Q ss_pred HHccCC
Q 004856 632 LISMEP 637 (727)
Q Consensus 632 ~~~~~p 637 (727)
++.+..
T Consensus 283 A~~L~~ 288 (421)
T PRK12798 283 ALKLAD 288 (421)
T ss_pred HHHhcc
Confidence 998763
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.71 E-value=92 Score=25.94 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
+..+-++.+....+.|++.....-+++|.+.+++..|.++|+.++.+ ..+....|-.++ ++-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 34455666777778999999999999999999999999999998875 334444565554 3445556666
Q ss_pred CC
Q 004856 601 PF 602 (727)
Q Consensus 601 ~~ 602 (727)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.99 E-value=17 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788888999988888877777766554
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.88 E-value=2.5e+02 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004856 373 NSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEG 430 (727)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 430 (727)
..|+.-|...|++.+|....+++.-| ..+.+.+++.+.-+.|+-...+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45667788888888888888877655 44677778888777777777777776666555
No 388
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.73 E-value=2e+02 Score=28.11 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhcCChHHH
Q 004856 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVK-----TKTVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 366 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A 419 (727)
.++..+...++..+++.+++.+-.++++... ..|...|..+|......|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 3444444555555555555555555554432 22555666666666666665433
No 389
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.58 E-value=2.7e+02 Score=29.53 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHH
Q 004856 95 NSLLYGTILKNLSKFGEYEKTLLVYKQMALQ-SMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALV 173 (727)
Q Consensus 95 ~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 173 (727)
|+..|-.-|.-+-+.+.+.+.-.+|.+|... +-.||...+.+. .-+-...+++.|++++-.-++... ..+..|-.-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~np-dsp~Lw~eyf 181 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFNP-DSPKLWKEYF 181 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcCC-CChHHHHHHH
Confidence 7778888887777777788888999988763 445555444322 223334457788887776666542 2334444433
Q ss_pred H
Q 004856 174 E 174 (727)
Q Consensus 174 ~ 174 (727)
.
T Consensus 182 r 182 (568)
T KOG2396|consen 182 R 182 (568)
T ss_pred H
Confidence 3
No 390
>PRK10941 hypothetical protein; Provisional
Probab=55.52 E-value=1.6e+02 Score=28.61 Aligned_cols=78 Identities=8% Similarity=0.031 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL 583 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 583 (727)
..+.+-.+|.+.++++.|+...+.+.. +.|+ ..-+.--.-.|.+.|.+..|..-++...+...-.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345666778888888888888888888 5564 4445556667888888888888888887664555555555555544
Q ss_pred H
Q 004856 584 L 584 (727)
Q Consensus 584 ~ 584 (727)
+
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 4
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.30 E-value=92 Score=25.32 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
-|..|+.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999887
No 392
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.88 E-value=1.9e+02 Score=27.26 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHhhHHH---HHHH--HHHc-CCHHHHHHHHHHHHccCCCCcchH
Q 004856 582 NLLGRAGHMDEARELVKDM---PFKPDARVWGP---LLSA--CKMH-SETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~~~~-g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
+.-+..+++.+|+++|++. ....+..-|.. ++.+ |.-. .|.-.+...+++-.+++|.-..+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 3344677888999998877 23333333322 3333 4433 677778888888889999755443
No 393
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.79 E-value=4.3e+02 Score=31.31 Aligned_cols=125 Identities=8% Similarity=-0.049 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHH
Q 004856 535 RPDLITFLGLLTACVNAGLVEE-GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLL 613 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 613 (727)
.++...-.....++...+..+. +...+..+.. .++..+-...+.++.+.|..+.+...+..+-..++..+-...+
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa 828 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAA 828 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHH
Confidence 3455555555555555544322 2233333332 3455566666666666666544433333332234444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
.++...+. +++...+..+++ +| +...-..-+.++.+.+.-.++...+...
T Consensus 829 ~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 829 RALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 55555554 234444444432 22 3444444455555542223444444433
No 394
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.59 E-value=33 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLE 429 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~ 429 (727)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666543
No 395
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.61 E-value=4.1e+02 Score=30.47 Aligned_cols=219 Identities=11% Similarity=-0.007 Sum_probs=109.5
Q ss_pred hcCCHHHHHHHHhcCC----CCCh-------hHHHHHHHH-HHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 004856 381 ECEDLNCARKIFDSVK----TKTV-------VSWSSMIKG-YVTHDQSLEALRLFSEMKLE----GVEVDFVTIINILPA 444 (727)
Q Consensus 381 ~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a 444 (727)
...++.+|..+..+.. .++. ..|+++-.. ....|++++|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4567777776665432 2221 245555433 23467788888877766543 123344555566667
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCchHhHHHH---H--HHHHHhcCCH--HHHHHHHHhccCC----CC----CHHHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLGLNSLSSVNTA---I--FISYAKCGCI--EMAGELFDEEKID----SK----DIITWNSM 509 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--i~~~~~~g~~--~~A~~~~~~~~~~----~~----~~~~~~~l 509 (727)
..-.|++++|..+.+...+..-..+...+.. + ...+...|+. ++.+..|...... +| -......+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 7778888888887766665422223332222 2 2234455632 2333333321110 11 12333334
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHCCCCCChHH--HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHH
Q 004856 510 ISAYAKH-GDWSQCFKLYTQMKQSDVRPDLIT--FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVN 582 (727)
Q Consensus 510 i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 582 (727)
..++.+. +...++..-++--......|-... +..|.......|++++|...+.++..- ...+. -..-...+.
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhh
Confidence 4444431 222222222222222222221222 236677777889999999888887754 22232 111122222
Q ss_pred --HHHhcCCHHHHHHHHHhC
Q 004856 583 --LLGRAGHMDEARELVKDM 600 (727)
Q Consensus 583 --~~~~~g~~~~A~~~~~~~ 600 (727)
.....|+.++|.....+-
T Consensus 666 ~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 666 LILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhcccCCHHHHHHHHHhc
Confidence 233678888888877764
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.61 E-value=4.3e+02 Score=30.35 Aligned_cols=220 Identities=14% Similarity=0.075 Sum_probs=118.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----H---HHHHHHH-HHhcCCChHHHHHHHHHHHH----hCCCchHhHHHHHHH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDF----V---TIINILP-ACVNIGALEHVKYLHGYSMK----LGLNSLSSVNTAIFI 478 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~----~---t~~~ll~-a~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~ 478 (727)
....++++|..++.+....-..|+. . .+..+-. .....|+++.+..+.+.... .-..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4578899999998887654222222 1 2222211 23456888888888766654 233455666777777
Q ss_pred HHHhcCCHHHHHHHHHhccCC--CCCHH---HHHHHHH--HHHHcCCh--HHHHHHHHHHHHCC--CCC----ChHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKID--SKDII---TWNSMIS--AYAKHGDW--SQCFKLYTQMKQSD--VRP----DLITFLG 543 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~li~--~~~~~g~~--~~A~~~~~~m~~~g--~~p----~~~t~~~ 543 (727)
+..-.|++++|..+..+.... .-++. .|..+.. .+...|+. .+.+..|....... -+| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999888764321 22333 3444332 34455633 23333333333211 122 2234555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhHHhcCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCCHhhHHHHH
Q 004856 544 LLTACVNA-GLVEEGRIIFKEMKESYGYEPSQEH--YASMVNLLGRAGHMDEARELVKDM-----PF--KPDARVWGPLL 613 (727)
Q Consensus 544 ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-----~~--~p~~~~~~~ll 613 (727)
++.++.+. +...++..-++--... ...|-... +..|+..+...|++++|...++++ .. .++-......+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 55555542 1222222222222211 22222222 236778888999999999998887 11 22223333333
Q ss_pred HH--HHHcCCHHHHHHHHHH
Q 004856 614 SA--CKMHSETELAELTAEK 631 (727)
Q Consensus 614 ~~--~~~~g~~~~A~~~~~~ 631 (727)
.. ....||.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 33 4577888888776665
No 397
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.32 E-value=2.6e+02 Score=27.88 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh------cCCHHHHHHHHHHhHHhcCCCCC
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN------AGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
..|-..|+-- -+++++.++++....+ .|.+......|.+|-. .-+|..-..+|+.+.. +.|+
T Consensus 261 dQDr~lW~r~--------lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apS 328 (415)
T COG4941 261 DQDRSLWDRA--------LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPS 328 (415)
T ss_pred ccchhhhhHH--------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCC
Confidence 3455666643 3678888898888877 4888887777776643 2367777888887774 4565
Q ss_pred hh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CHhhHHHHHH-HHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 574 QE-HYASMVNLLGRAGHMDEARELVKDMPFKP---DARVWGPLLS-ACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 574 ~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
+. +.|- .-++.+..-.+.++..++...-.| +...|.+.-. .+.+.|..++|...|++++.+.++...
T Consensus 329 PvV~LNR-AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 329 PVVTLNR-AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CeEeehH-HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 44 3333 223344444667777777764343 2233444433 389999999999999999998875443
No 398
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.06 E-value=66 Score=31.81 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=61.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C---CCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 580 MVNLLGRAGHMDEARELVKDM-P---FKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
=.+-|.+..++..|...|.+- . -.|| .+.|+.-..+-...|++..++.-..+++.++|.+..+|..=+.++...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 345566677777777777654 1 1232 344555555556778888888888889999998888888888888888
Q ss_pred CChhHHHHHHHHH
Q 004856 654 GKWNGVAKMRTFL 666 (727)
Q Consensus 654 g~~~~a~~~~~~m 666 (727)
.++++|....+..
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 8877777666543
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.45 E-value=62 Score=27.82 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 590 MDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 590 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
-+.|.++.+-|+- ..............|++..|.++.+.++..+|+|..+-...+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4567777777752 22222333446789999999999999999999999998888888887765443
No 400
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.42 E-value=3.9e+02 Score=29.56 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 413 HDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
.|+..+|.+.+-.+...+..|...-...+.
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp ------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 355666666666666555555554443333
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.41 E-value=2.5e+02 Score=27.27 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=52.8
Q ss_pred CCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHH----HHHcCCCCChhhHHHHHHHhhcCCChH-HHHH
Q 004856 281 LASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMC----MVRSGFRADLFTAIAAVSSISTMKNIE-WGKQ 355 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~ 355 (727)
.+++++|.+++.. =...+.+.|+...|.++-.- ..+.+.++|......++..+...+.-+ .-.+
T Consensus 3 ~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 4556666655533 13344556666555444333 334466666665555555554433211 2333
Q ss_pred HHHHHHHh---CCC--CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh
Q 004856 356 MHANVLRN---GSD--YQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV 401 (727)
Q Consensus 356 ~~~~~~~~---g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (727)
+.+.+++. |-. -|+.....+...|.+.|++.+|+..|-.-.+++..
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~ 122 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAF 122 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHH
Confidence 33333332 222 25567778888888888888888777654433333
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.26 E-value=90 Score=25.38 Aligned_cols=27 Identities=11% Similarity=0.410 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
-|..++..|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777765
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.21 E-value=57 Score=29.92 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=10.9
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004856 536 PDLITFLGLLTACVNAGLVEEGRIIFKEM 564 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 564 (727)
|+..+|..++.++...|+.++|.+..+++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 404
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.74 E-value=2.8e+02 Score=27.46 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-h
Q 004856 501 KDIITWN--SMISAYAKHGDWSQCFKLYTQMKQSDVRPDL---ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-Q 574 (727)
Q Consensus 501 ~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 574 (727)
.++.+|- .+..+-.+.|+..+|.+.++.+.+. .|-. .....|+.+|....-+.+...++.+.-+- ..+.+ .
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~ 347 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAA 347 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHH
Confidence 3444442 3444445778888888888887653 3322 22445677777766666666665544432 22222 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
..|++ ++ -++..+-++ +.||..+-.-|-.+ -..|.+...++.+.+|.-+
T Consensus 348 icYTa---AL------LK~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 348 ICYTA---AL------LKTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHH---HH------HHHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCc
Confidence 23332 11 122233333 24554333222221 2346777788888888543
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.19 E-value=66 Score=29.46 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 602 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
..|+...+..++.++...|+.++|.+..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456777777777777777777777777777776666
No 406
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.39 E-value=2.9e+02 Score=27.18 Aligned_cols=48 Identities=10% Similarity=-0.044 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC---------------ChhHHHHHHHHHHhCCC
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAG---------------KWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~ 671 (727)
|.++|...|+++-+... ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66677777777666554 33344444 444444 55556666666555543
No 407
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.18 E-value=27 Score=29.33 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=24.8
Q ss_pred hCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 004856 210 QNGKSEKSFELFKLMRMEGAEFDSGTLINLLRST 243 (727)
Q Consensus 210 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 243 (727)
..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 347778899999999999998885 55555543
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.18 E-value=64 Score=25.34 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=35.6
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCC---------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 616 CKMHSETELAELTAEKLISMEPEN---------AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
..+.||+..|.+.+.+..+..... ..+...++.++...|.+++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456778888877777766532211 12334567778888999999988887654
No 409
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.96 E-value=2.8e+02 Score=31.61 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=88.0
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
....+|+++.|.+.-..+. |..+|..|...-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.
T Consensus 652 LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 3567899999888776654 667899999998999999999888887664 333444456678888777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
++.+.+..+ .|.... .+... -.|+.++-.++++..+..|- .|. .-..+|.-++|+++.++.-.
T Consensus 719 Km~~iae~r----~D~~~~-~qnal--Yl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDATGQ-FQNAL--YLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh----hhhHHH-HHHHH--HhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 666555433 232211 11112 25888898999988864442 121 13578888999999888766
No 410
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.44 E-value=25 Score=39.22 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=30.4
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 585 GRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
..+|+++.|++.-.+.. |...|..|......+|+.+.|+..|++...
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 45667777766666553 455677777666667777777776666554
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.26 E-value=3.5e+02 Score=27.80 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=45.7
Q ss_pred CHhhHHHHH---HHHHHcCCHHHHHHHHHHHHccCCC-CcchHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 004856 605 DARVWGPLL---SACKMHSETELAELTAEKLISMEPE-NAGNYVLLSNIY-AAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 605 ~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 668 (727)
|...|.++. ..+.+.|-+..|.+..+-++.++|. |+-.....++.| .+.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444555543 4478899999999999999999998 776666666654 455677666666665444
No 412
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.93 E-value=75 Score=29.63 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCC-C
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD-Q 694 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d-~ 694 (727)
..+.+|.+.+-+++.+++++-|+....|..++..-.+.|+++.|.+.+++..+....-..+... ++..+-.+. +
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~-----kLa~lg~~e~p 79 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL-----KLAVLGRGETP 79 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh-----hHHhhcCCCCC
Confidence 3456777888888888888888888888888888888888888888887776654321111100 011112222 4
Q ss_pred CCcChHHHHHHHHHH
Q 004856 695 SHPQADAIYTILGIL 709 (727)
Q Consensus 695 ~hp~~~~i~~~l~~l 709 (727)
..|....+...+++.
T Consensus 80 ~~pP~aYVe~LFD~~ 94 (287)
T COG4976 80 EKPPSAYVETLFDQY 94 (287)
T ss_pred CCCchHHHHHHHHHH
Confidence 566666677767666
No 413
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.79 E-value=2.4e+02 Score=25.80 Aligned_cols=53 Identities=15% Similarity=0.025 Sum_probs=22.8
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSKD--IITWNSMISAYAKHGDWSQCFKLYTQMKQS 532 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 532 (727)
......|.+++|...++... .++ ......-.+.+...|+-++|..-|++.++.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444455555555554433 111 111112223444555555555555555543
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.68 E-value=23 Score=25.26 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
.++.++...|++++|.++.+.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 415
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.07 E-value=3e+02 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTI 438 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 438 (727)
.+-..+.+++++|+..+.++...|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34456778899999999999988887776554
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.85 E-value=77 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHH
Q 004856 208 AVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLR 241 (727)
Q Consensus 208 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 241 (727)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777776666666655543
No 417
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=44.70 E-value=57 Score=20.23 Aligned_cols=29 Identities=10% Similarity=-0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCHHHHHHH--HHHHHccCCC
Q 004856 610 GPLLSACKMHSETELAELT--AEKLISMEPE 638 (727)
Q Consensus 610 ~~ll~~~~~~g~~~~A~~~--~~~~~~~~p~ 638 (727)
-.+...+...|++++|+.+ ++-+..++|.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3444446677777777777 3355555543
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.50 E-value=2.4e+02 Score=27.36 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.1
Q ss_pred HHHHHhcCChHHHHHHH
Q 004856 407 IKGYVTHDQSLEALRLF 423 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~ 423 (727)
|.+++..+++.+++...
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 45555555555555443
No 419
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.13 E-value=2e+02 Score=30.95 Aligned_cols=132 Identities=16% Similarity=0.058 Sum_probs=88.3
Q ss_pred CCChHHHHHHHHHHHhc--CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCC--CHhh
Q 004856 535 RPDLITFLGLLTACVNA--GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR-AGHMDEARELVKDM-PFKP--DARV 608 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 608 (727)
-|+..|..+++.-.... ...+-|-.++..|.. .+.|--... .+...|.| .|+...|...+..+ ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666665555433322 123345555555542 333322222 23445554 68999999998877 3444 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.-.|.+...+.|..-.|-.++.+.+.+....+-++..++++|....+.+.|++.++...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4556666777778888999999999988778889999999999999999999999887665
No 420
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.04 E-value=2.1e+02 Score=26.81 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHH--HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh
Q 004856 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP---DLITFL--GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE 575 (727)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 575 (727)
++..-.|.|+--|.-+..+.+|.+.|.. +.|+.| |..++. .-|......|+.++|.+....+... -++-|..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchh
Confidence 3344445555444444445555444433 233444 222222 2344455666666666666655443 3334432
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHh
Q 004856 576 HYASMVN----LLGRAGHMDEARELVKD 599 (727)
Q Consensus 576 ~~~~li~----~~~~~g~~~~A~~~~~~ 599 (727)
.+-.|.. -+.|.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222111 12456666666666654
No 421
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.46 E-value=69 Score=31.14 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHH
Q 004856 585 GRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVL 645 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 645 (727)
.+.|+.++|..+|+.+ ...|+.. ...-+....-.+++.-+|.++|-+++.+.|.+..+...
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3567777777777765 4455433 22222233445566777777777777777776665543
No 422
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.45 E-value=1.1e+02 Score=33.90 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhh
Q 004856 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279 (727)
Q Consensus 200 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 279 (727)
.|..-+..+...++.. ....+.+..+-...+.....-++..|.+.|-.+.+..+++.+-..-.. ..-|-.-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 3555555554444332 444444444333334445555666666666666666666554333211 112333444555
Q ss_pred cCCChHHHHHHHhc
Q 004856 280 KLASLEDAKMLFDK 293 (727)
Q Consensus 280 ~~g~~~~A~~~~~~ 293 (727)
++|+......+-+.
T Consensus 450 ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 450 RAGDYSLVTRIADR 463 (566)
T ss_dssp --------------
T ss_pred HCCCHHHHHHHHHH
Confidence 66665554444443
No 423
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.71 E-value=4.7e+02 Score=28.27 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKI 498 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~ 498 (727)
.++.-|.+.+++++|..++..|.=
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCc
Confidence 456678888888888888888763
No 424
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.82 E-value=3e+02 Score=29.75 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC------------hhHHHHHHHHHHhcCCHHHHHHHHHhC----------CCCCC
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPS------------QEHYASMVNLLGRAGHMDEARELVKDM----------PFKPD 605 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~ 605 (727)
+.+...++++...|..... -.+|+ +.+.-.+.+.+...|+.+-|.+++++. .+.|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred ----------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CcchHHHHHHHHH
Q 004856 606 ----------------ARVWGPLLSACKMHSETELAELTAEKLISMEPE-NAGNYVLLSNIYA 651 (727)
Q Consensus 606 ----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 651 (727)
..+....+..+.+.|-+..|.+..+.+++++|. ||-....+++.|+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 425
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=41.02 E-value=2e+02 Score=24.14 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHH-HHHHHHHHcCCHHHHHHHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWG-PLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~ 631 (727)
+..++.-++.-.|..++|.++++..+.-+.....| -++..|....+.++..++-++
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34445555555566666666655554444433332 244445555555444444333
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.61 E-value=1.7e+02 Score=22.63 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 004856 381 ECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 419 (727)
..|+.+.|.++++.++ +.+..|...+.++-..|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777777777777 7777777777777777665544
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.34 E-value=67 Score=22.92 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=11.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMK 530 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~ 530 (727)
.+|.+|...|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555443
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.07 E-value=1.7e+02 Score=22.62 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=28.2
Q ss_pred cCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHH
Q 004856 280 KLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKES 318 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 318 (727)
..|+.+.|.++++.++ +.+..|..+++++-+.|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577788888888888 7777788888887777765544
No 429
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.05 E-value=6.6e+02 Score=29.25 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=82.2
Q ss_pred hHHHHHHHhhhccCCCChhhhhhhcc-CC-CC-------CcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHH
Q 004856 167 DVGDALVEFYIKCDGGFENEKGMIQR-KF-KD-------LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLI 237 (727)
Q Consensus 167 ~~~~~li~~y~~~~~g~~~~a~~~~~-~~-~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 237 (727)
.+-++|...|.....+-...-.+.+. .. -. ...-|..|+..|...|+.++|+++|.+.....-.-|. +
T Consensus 464 ~IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~-- 540 (877)
T KOG2063|consen 464 LIDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-F-- 540 (877)
T ss_pred HHHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhcccccccc-c--
Confidence 35567778887663232222222211 11 11 1223889999999999999999999998753100010 0
Q ss_pred HHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhh---cCCChHHHHHHHhcCCC--CCeehHHHHHHHHHhc
Q 004856 238 NLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS---KLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQS 312 (727)
Q Consensus 238 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 312 (727)
..+.-..+.+.+.+.+-+... |+--|. -..+.+...++|-.-.. .....-. -+-.|...
T Consensus 541 ----------~~~~~e~ii~YL~~l~~~~~~-----Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~ 604 (877)
T KOG2063|consen 541 ----------QLDGLEKIIEYLKKLGAENLD-----LILEYADWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKS 604 (877)
T ss_pred ----------hhhhHHHHHHHHHHhcccchh-----HHHHHhhhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhh
Confidence 111112233344443322111 111111 23445556666655111 0111111 23445667
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 004856 313 GFPKESLELLMCMVRSGFRADLFTAIAAVSSIS 345 (727)
Q Consensus 313 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 345 (727)
...+-++..++.+....-.++..-.+.++.-|.
T Consensus 605 ~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 605 KEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 778888888888876655556666666665554
No 430
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.80 E-value=1.2e+03 Score=32.08 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=11.2
Q ss_pred HHhhcCCChHHHHHHHhcC
Q 004856 276 SMYSKLASLEDAKMLFDKM 294 (727)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~~ 294 (727)
-.|...|.+++|..++++.
T Consensus 2490 ~s~eQ~G~~e~AQ~lyeka 2508 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKA 2508 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHH
Confidence 3455566666666666654
No 431
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.99 E-value=47 Score=32.41 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHH
Q 004856 201 WNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLIN 238 (727)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 238 (727)
||..|....+.|++++|+.++++..+.|+.--..+|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 67888888888888888888888888886554555543
No 432
>PHA03100 ankyrin repeat protein; Provisional
Probab=38.93 E-value=5.2e+02 Score=27.69 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=5.6
Q ss_pred cCCChHHHHHHHh
Q 004856 280 KLASLEDAKMLFD 292 (727)
Q Consensus 280 ~~g~~~~A~~~~~ 292 (727)
+.|+.+-...+++
T Consensus 117 ~~~~~~iv~~Ll~ 129 (480)
T PHA03100 117 KSNSYSIVEYLLD 129 (480)
T ss_pred ccChHHHHHHHHH
Confidence 4444444444443
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.17 E-value=2.1e+02 Score=23.77 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=13.3
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 004856 647 SNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m 666 (727)
+.++...|+.++|...|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44567778888888877753
No 434
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.05 E-value=1.2e+02 Score=20.21 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=17.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLL 545 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 545 (727)
.+.|-.+++..++++|.+.|+.-+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555556666666666555555554444
No 435
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=37.97 E-value=3.4e+02 Score=25.32 Aligned_cols=159 Identities=13% Similarity=-0.001 Sum_probs=78.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL--ITFLGLL 545 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 545 (727)
-+.++|-|.-.+...|+++.|.+.|+..-+..|. ..+.-.-.-++---|++.-|.+-+-+.-+.. +.|+ ..|.-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3567777777778888888888888886643342 1122111222334577887777666655532 1122 1222221
Q ss_pred HHHHhcCCHHHHHHHH-HHhHHhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhCCCCCC-------HhhHHHHHHHH
Q 004856 546 TACVNAGLVEEGRIIF-KEMKESYGYEPSQEHYAS-MVNLLGRAGHMDEARELVKDMPFKPD-------ARVWGPLLSAC 616 (727)
Q Consensus 546 ~~~~~~g~~~~a~~~~-~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~ 616 (727)
...-++.+|..-+ ++.. + .+..-|.. ++..|.-.=..+.+.+-...-. ..+ ..+|--|..-+
T Consensus 177 ---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADA-TDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHH
Confidence 1223445554433 2222 2 23333332 2222221111222222221111 111 12444555557
Q ss_pred HHcCCHHHHHHHHHHHHccCC
Q 004856 617 KMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p 637 (727)
...|+.++|..+|+-++..+.
T Consensus 248 l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccccHHHHHHHHHHHHHHhH
Confidence 788899999998888876543
No 436
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.65 E-value=33 Score=28.82 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=25.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
....|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 44556777899999999999988874 45565543
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.56 E-value=63 Score=31.61 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
-|+..|..-.+.||+++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888889999999999999999888766556654433
No 438
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.35 E-value=5.4e+02 Score=27.55 Aligned_cols=23 Identities=0% Similarity=-0.061 Sum_probs=11.1
Q ss_pred HHHHHccCChhHHHHHHhcCCCC
Q 004856 72 IDSYANLGLLSLSQQVFNSITSP 94 (727)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~~~~~ 94 (727)
+...++.|+.+-...+++.-..+
T Consensus 39 L~~A~~~~~~~ivk~Ll~~g~~~ 61 (480)
T PHA03100 39 LYLAKEARNIDVVKILLDNGADI 61 (480)
T ss_pred hhhhhccCCHHHHHHHHHcCCCC
Confidence 33344555555555555544333
No 439
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.99 E-value=4.4e+02 Score=26.32 Aligned_cols=96 Identities=19% Similarity=0.105 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 004856 554 VEEGRIIFKEMKESYGY---EPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAE 630 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 630 (727)
.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+....+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888887763111 335556666677777888877766666666556677788888999888888888888999
Q ss_pred HHHccC-CCCcchHHHHHHH
Q 004856 631 KLISME-PENAGNYVLLSNI 649 (727)
Q Consensus 631 ~~~~~~-p~~~~~~~~l~~~ 649 (727)
.++.-+ -.....+..+..+
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHH
Confidence 998843 2233344444433
No 440
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.71 E-value=1.7e+02 Score=26.95 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEPENAGN-YVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLV 686 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 686 (727)
....++..|...||++.|-++|--++...+-|... +..=+.++.+.+.-....++++.|...-...........-....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 45667777888888888888888887765544433 33334456666655555567766644321111111111111234
Q ss_pred EEEEeCCCCCcChHHHHHHHHHH
Q 004856 687 HEFWAADQSHPQADAIYTILGIL 709 (727)
Q Consensus 687 ~~f~~~d~~hp~~~~i~~~l~~l 709 (727)
..|.+|.+.|-....+...|..+
T Consensus 123 pvfrsGs~t~tp~y~~~~LW~~l 145 (199)
T PF04090_consen 123 PVFRSGSRTHTPLYAITWLWILL 145 (199)
T ss_pred ccccCCCcccchHHHHHHHHHHH
Confidence 77888998885555555555444
No 441
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.66 E-value=4.6e+02 Score=26.41 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 501 KDIITWNSMISAYAKH------------GDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 501 ~~~~~~~~li~~~~~~------------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
-|+.+|-.++.---.. .-.+.-+.++++.++. .| +..-...++..+.+..+.++..+-++++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3667776666432211 1245667788888876 45 4566777888888888888888889988875
Q ss_pred cCCCCChhHHHHHHHHHHh---cCCHHHHHHHHHhC---------CC---C---C--CHhhHHHHHH---HHHHcCCHHH
Q 004856 568 YGYEPSQEHYASMVNLLGR---AGHMDEARELVKDM---------PF---K---P--DARVWGPLLS---ACKMHSETEL 624 (727)
Q Consensus 568 ~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~---------~~---~---p--~~~~~~~ll~---~~~~~g~~~~ 624 (727)
.+-+...|...++.... .-.+++..++|.+. +. . | +......++. .+.+.|..+.
T Consensus 95 --~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 95 --NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred --CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 22356677777765543 22455555555443 11 0 1 1122222333 3678999999
Q ss_pred HHHHHHHHHccC
Q 004856 625 AELTAEKLISME 636 (727)
Q Consensus 625 A~~~~~~~~~~~ 636 (727)
|..+++-+++++
T Consensus 173 Ava~~Qa~lE~n 184 (321)
T PF08424_consen 173 AVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHH
Confidence 999999999965
No 442
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.63 E-value=59 Score=30.31 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=29.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
.+.|+.+.|.+++.+. ...| ....|--+...--+.|+.+.|.+.+++.++++|+|
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555554 3333 23345444444555666666666666666666544
No 443
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.41 E-value=1.1e+02 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=17.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc
Q 004856 614 SACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
......|+.++|...+++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3467788888888888888774
No 444
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=36.27 E-value=6.6e+02 Score=28.12 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHHhCC---CCCChhhHHHHHHHhc--ccCChhHHHHHHHHHHHhcC---------CCChhHHhHHHH
Q 004856 211 NGKSEKSFELFKLMRMEG---AEFDSGTLINLLRSTV--ELKSLELGRIVHCVAVVSDF---------CKDLSVNTALLS 276 (727)
Q Consensus 211 ~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~ 276 (727)
.+++..|++.++.+...- ..|-...+..++.+.. +.+..+.+.+....+..... .|-..++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 378888888888876532 2333445555555543 33445556666655543221 123344444444
Q ss_pred Hhh--cCCChHHHHHHHhcC
Q 004856 277 MYS--KLASLEDAKMLFDKM 294 (727)
Q Consensus 277 ~~~--~~g~~~~A~~~~~~~ 294 (727)
.++ ..|++..+...++++
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 433 445555555444443
No 445
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.19 E-value=52 Score=31.95 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=37.6
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD 605 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 605 (727)
.+.|+.++|..+|+.... +.|+ +....-+........++-+|-.++-++ .+.|.
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 478999999999999884 4565 445555555555556777787777666 55553
No 446
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.07 E-value=2.1e+02 Score=22.31 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 630 EKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 630 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
++.++.+|+|......++..+...|++++|.+.+-.+
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444444444444555555555544444443
No 447
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.31 E-value=1.7e+02 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 600 MPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 600 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.+-|++.....-+.+|++-+|+..|.++++-+...-++....|-.+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 35678888888999999999999999999888876544333344433
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.25 E-value=4.3e+02 Score=25.65 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=19.4
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
-++.....+...|.+.|++.+|+..|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3566677778888888888888877754
No 449
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.22 E-value=69 Score=33.38 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=72.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRA 587 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 587 (727)
...+...+.++.|..++.+.++ +.||.. .|..-..++.+.+++..|+.=+..+.+. .|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4455677899999999999999 678654 4555558888999999998887777753 454 22333333444555
Q ss_pred CCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHH
Q 004856 588 GHMDEARELVKDM-PFKPDARVWGPLLSACKM 618 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 618 (727)
+++.+|...|+.. ...|+..-....+.-|..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 6677777777776 577887777777666643
No 450
>PRK09169 hypothetical protein; Validated
Probab=32.96 E-value=1.2e+03 Score=30.38 Aligned_cols=436 Identities=12% Similarity=0.033 Sum_probs=230.5
Q ss_pred CChhhHHHHHHHhcccCChhHHHHHHHHHHH---hc----CCCChhHHhHHHHHhhcCCChHHHHHHHhcC----CC---
Q 004856 231 FDSGTLINLLRSTVELKSLELGRIVHCVAVV---SD----FCKDLSVNTALLSMYSKLASLEDAKMLFDKM----SD--- 296 (727)
Q Consensus 231 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--- 296 (727)
.+...+..+++++++=.+-..+...-+.+-. .. ...+..-...++++++|.-+-......-..+ ..
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 4566677777777765554444333333211 00 1223444455667777665544433332222 11
Q ss_pred ----CCeehHHHHHHHHHhcCCchHHHHHHHHH---HHc--C--CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH---
Q 004856 297 ----KDRVVWNIMISAYYQSGFPKESLELLMCM---VRS--G--FRADLFTAIAAVSSISTMKNIEWGKQMHANVLR--- 362 (727)
Q Consensus 297 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~--g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--- 362 (727)
-+......++++++|-.+.+.+...-..+ +.. + ..-|.......++++++..+-+.+...-..+-.
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~ 319 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLA 319 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 13445566777887766655443332222 111 1 123566677888888888765544333222211
Q ss_pred ----hCCCCChhHHHHHHHHHHhcCCHHHHHH----HHhcCC-------CCChhHHHHHHHHHHhcCChHH----HHHHH
Q 004856 363 ----NGSDYQVSVHNSLIDMYCECEDLNCARK----IFDSVK-------TKTVVSWSSMIKGYVTHDQSLE----ALRLF 423 (727)
Q Consensus 363 ----~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~ 423 (727)
..-..+..-....+++++|..+-+.+.. +-+.+. .-|..-....+.++.|-++-+. |..+.
T Consensus 320 ~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA 399 (2316)
T PRK09169 320 QERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALA 399 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1122344445667778888776654322 222221 1155556667788887665432 33344
Q ss_pred HHHHHC-C--CCCCHHHHHHHHHHHhcCCChHHHHHHHHHH----HHh---CCCchHhHHHHHHHHHHhcCCHHH----H
Q 004856 424 SEMKLE-G--VEVDFVTIINILPACVNIGALEHVKYLHGYS----MKL---GLNSLSSVNTAIFISYAKCGCIEM----A 489 (727)
Q Consensus 424 ~~m~~~-g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~----~~~---~~~~~~~~~~~li~~~~~~g~~~~----A 489 (727)
..+... + -..|..-....+.+|++-+.-+........+ ... .-..+..-....+.+++|-++-+. +
T Consensus 400 ~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa 479 (2316)
T PRK09169 400 ARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAA 479 (2316)
T ss_pred HHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHH
Confidence 444332 1 2356778888999999887665443332222 110 113345566667778887766442 3
Q ss_pred HHHHHhccCC-----CCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHHC---CCCCChHHHHHHHHHHHhcCCHHHH
Q 004856 490 GELFDEEKID-----SKDIITWNSMISAYAKHGDWSQCFKL----YTQMKQS---DVRPDLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 490 ~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a 557 (727)
..+...+... .-+..-....+.++++-++.+.+... ..++... --.-|..-+...+.++++-.+.+.+
T Consensus 480 ~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~c 559 (2316)
T PRK09169 480 EALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDC 559 (2316)
T ss_pred HHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHH
Confidence 3333333221 23556677888899988876654332 2222221 0123556677888999987764332
Q ss_pred ----HHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHH----HHHHHHhC----C--CCCCHhhHHHHHHHHHHcCC
Q 004856 558 ----RIIFKEMKESYG--YEPSQEHYASMVNLLGRAGHMDE----ARELVKDM----P--FKPDARVWGPLLSACKMHSE 621 (727)
Q Consensus 558 ----~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~----~--~~p~~~~~~~ll~~~~~~g~ 621 (727)
..+...+..+-+ -..+.......+.++.|-+.-.. |..+.... + ..-+..-+...++++.+-.+
T Consensus 560 r~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~ 639 (2316)
T PRK09169 560 RAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD 639 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC
Confidence 233333322200 12345667778888888775432 33333333 1 12356677788888888877
Q ss_pred HHHHHHHHHHHHc---cCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 622 TELAELTAEKLIS---MEP-----ENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 622 ~~~A~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
.+........+.. .++ -++....++++++++-.+.+.+.+....+
T Consensus 640 ~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 640 EDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred chhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 6665544443332 121 24555667778888877766555544444
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.52 E-value=3e+02 Score=23.08 Aligned_cols=42 Identities=5% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 521 QCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFK 562 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 562 (727)
.+.++|+.|..+|+--. +.-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554443 3334444555555555555555554
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.33 E-value=1.7e+02 Score=28.06 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=9.6
Q ss_pred HHHHHhcCCchHHHHHHHH
Q 004856 306 ISAYYQSGFPKESLELLMC 324 (727)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~ 324 (727)
+.+|...|++.+|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3445555555555554443
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.21 E-value=1.8e+02 Score=26.04 Aligned_cols=66 Identities=5% Similarity=-0.207 Sum_probs=43.4
Q ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCh
Q 004856 82 SLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDF 147 (727)
Q Consensus 82 ~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 147 (727)
+.+.+++....-+.+..--.++..+...+.+-.|.++++++.+.+..++..|....|..+...|-+
T Consensus 11 ~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334444444333444455566777776777778888888888888777777777677766666544
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.34 E-value=9.4e+02 Score=28.11 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLE 429 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 429 (727)
-|..|+..|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3778888899999999999999888763
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.93 E-value=2.8e+02 Score=30.43 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=14.4
Q ss_pred HHHHHhcccCChhHHHHHHHHHHH
Q 004856 238 NLLRSTVELKSLELGRIVHCVAVV 261 (727)
Q Consensus 238 ~ll~~~~~~~~~~~a~~~~~~~~~ 261 (727)
+++.+|...|++..+.++++..+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 566666666666666666655554
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.64 E-value=2.4e+02 Score=27.07 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=31.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH----CCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQ----SDV-RPDLITFLGLLTACVNAGLVEEGRIIFKE 563 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 563 (727)
.|..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355666777777777777776632 221 12334455555666666666665554433
No 457
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.35 E-value=6.6e+02 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
.|+|++.|...+.++.|.++..+.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcc
Confidence 344444444455555555555554
No 458
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.02 E-value=2.4e+02 Score=21.70 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 004856 380 CECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLE 418 (727)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (727)
+...+.++|.++++.++.++..+|.....++-..|...-
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 344567778888888888888888877777776665443
No 459
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.94 E-value=2.8e+02 Score=24.02 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 004856 302 WNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST 346 (727)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 346 (727)
-..++..+.+.+.+-.|.++++++.+.+...+..|.-..|+.+..
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 344555555555556666666666665554444444444444333
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.66 E-value=1.9e+02 Score=23.38 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=10.0
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEM 426 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m 426 (727)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344445555555555555444
No 461
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.26 E-value=4e+02 Score=22.81 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004856 535 RPDLITFLGLLTACVNAG---LVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD 605 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 605 (727)
.++..+-..+..++.+.. ++.+++.+++.+.+. -.|+ .+..--|.-++.|.+++++++++++.. ..+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 455555555666666554 455677777777642 1232 233344566677888888888777765 33443
No 462
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.00 E-value=3.6e+02 Score=24.43 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 004856 554 VEEGRIIFKEMKESYGYEPS------QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSE 621 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 621 (727)
++.|+.+|+.+.+....+-+ .-.-...+-.|.+.|.+++|.+++++.-..|+......-+....+.+|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.58 E-value=2.5e+02 Score=25.03 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC
Q 004856 303 NIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMK 348 (727)
Q Consensus 303 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 348 (727)
..++..+...++.-.|.++++.+.+.+..++..|....|..+...|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444444444555566666666666655555555444444444444
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.48 E-value=5.5e+02 Score=24.18 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=59.4
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC---ChhHH--HHHHHHHHhcCCHHHHHHHHHhCC---CCCC
Q 004856 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP---SQEHY--ASMVNLLGRAGHMDEARELVKDMP---FKPD 605 (727)
Q Consensus 534 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~---~~p~ 605 (727)
+.+...-++.|+--|.-...+.+|-..|..-. |++| +...+ ..-|......|+.++|.+.++... +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45666666666655555555555655554433 6666 22222 245677789999999999999882 2333
Q ss_pred H--hhHHHHHHH--HHHcCCHHHHHHHHHHHHc
Q 004856 606 A--RVWGPLLSA--CKMHSETELAELTAEKLIS 634 (727)
Q Consensus 606 ~--~~~~~ll~~--~~~~g~~~~A~~~~~~~~~ 634 (727)
. ..+...+.. ..+.|..++|....+.=+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2 233333333 5677888888887765443
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.42 E-value=1.5e+02 Score=29.05 Aligned_cols=74 Identities=8% Similarity=0.097 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA-CKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
|+..|...+.-..+.|.+.+...++.+. ...| |+..|-.--.- +..+++++.+..++.+.+.++|++|..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3344444443333444444444454444 2233 33344332222 5667788888888888888888887766543
No 466
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=26.23 E-value=6.6e+02 Score=25.03 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP 536 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 536 (727)
+++.+...++-+........++.+.+.+.++-+.+++..+....+-.. ++ .. +-.+.+.-++++.+. +.|
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~---a~----~e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPN---AL----VE--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccchH---HH----HH--HHHHHHHHHHHHHHH-HHH
Confidence 445555566667777777777888888888888888887642222111 11 11 112223333333321 111
Q ss_pred ChHHH--HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHh---
Q 004856 537 DLITF--LGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM---PFKPDAR--- 607 (727)
Q Consensus 537 ~~~t~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~--- 607 (727)
=...+ --++... ..-.+....++.+.++|++.|+ ..+.-........||++..|-.++-.. ...||..
T Consensus 92 iv~~le~Pd~~~~~---~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 92 IVKVLENPDLIAAL---RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred HHHHHcCHHHHHHH---HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 00000 0011111 1223346778888889999998 446666677777899999998876443 3344442
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 608 -VWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 608 -~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
.|..+.+- .-..+++.|.+-+.++.+
T Consensus 169 alwGKlASE-IL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 169 ALWGKLASE-ILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHHHHH
Confidence 34443332 234578888887777766
No 467
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.12 E-value=3.5e+02 Score=30.26 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH----------HHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCCC
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLIT----------FLGLLTACVNAGLVEEGRIIFKEMKESY-GYEPS 573 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~ 573 (727)
+...++-.|....+++..+++.+.++. -||..- |.-.++--.+-|+-++|+...-.+.++. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445566777777888888888888876 343221 2222222234567777777766665542 24455
Q ss_pred hhH-----HHHH--HHHHHhcCCHHHHHHHHHhC-CCCCCHh---hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 574 QEH-----YASM--VNLLGRAGHMDEARELVKDM-PFKPDAR---VWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 574 ~~~-----~~~l--i~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
..+ |.-+ ...|...+..+.|.++|++. ...|... -+.+|+.+-.++ ++..+++-. .
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~--Fens~Elq~-----------I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH--FENSLELQQ-----------I 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh--ccchHHHHH-----------H
Confidence 322 1111 11233344556666666666 4455432 233333332211 111111111 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
-..|...+.+.|..+.-.++|+-.
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVA 370 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHH
Confidence 224455677888888877777653
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.05 E-value=2.3e+02 Score=24.53 Aligned_cols=48 Identities=8% Similarity=-0.122 Sum_probs=28.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhcc
Q 004856 97 LLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCL 144 (727)
Q Consensus 97 ~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 144 (727)
..--.++..+.+.+++-.|.++|+++++.+...+..|.-..|+.+...
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 334456666666666677777777777665555555544444444333
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.90 E-value=4e+02 Score=22.35 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
.-|..+--.|+..-. .+..+|+.|..+ |+--. ...|......+...|++++|.++++.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444334444333 889999999988 77665 55788889999999999999999864
No 470
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.87 E-value=1.2e+03 Score=27.76 Aligned_cols=254 Identities=11% Similarity=-0.005 Sum_probs=126.9
Q ss_pred HHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC
Q 004856 289 MLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368 (727)
Q Consensus 289 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 368 (727)
.+.+.+..+|...-..-+..+.+.+.. ++...+..... .+|...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 444444555666666666666665543 34444444442 22333333333333333211111122222222 245
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (727)
..+-...+..+...+.- ....+...+.++|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543311 12234455556666555555666665544332 11222 134555555555566655
Q ss_pred CChHH-HHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 004856 449 GALEH-VKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE-LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLY 526 (727)
Q Consensus 449 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 526 (727)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+.. +...+. .++...-...+.++...+. +++...+
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~--d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR--ASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc--CCChHHHHHHHHHHHhccc-cchHHHH
Confidence 54332 2222222222 4567777778888888887655433 333344 4555454556667777664 4566666
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 527 TQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 527 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
..+.+ .|+...-...+.++.+.+.-..+...+..+.+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66664 56766666667777665333456666666654
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.75 E-value=6.9e+02 Score=25.05 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCChhHHHHHH-HHHH----hcCCHHHHHHHHHhCC---CCCCHh
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKES---YGYEPSQEHYASMV-NLLG----RAGHMDEARELVKDMP---FKPDAR 607 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li-~~~~----~~g~~~~A~~~~~~~~---~~p~~~ 607 (727)
..+.....-|++.|+-+.|.+.+++..++ .|.+.|+..+..=+ -.|. -...+++|..++++-+ .+....
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45566677788888888888887765543 14555544333211 1121 2234666777777653 111122
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
+|..+- |...+++.+|-.+|-..+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 332221 4555677777776665554
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=4.9e+02 Score=25.47 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCChhHHHHHHH---HHHhcCCHHHHHHHHHhC---CCCC-CHh
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKES---YGYEPSQEHYASMVN---LLGRAGHMDEARELVKDM---PFKP-DAR 607 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~---~~~p-~~~ 607 (727)
...+..+...|++.++.+.+.+...+..++ .|.+.| ++-+.++ .|....-.++-++..+.+ +..- ...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiD--v~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKID--VFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchh--hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 456777888899999999888887765543 144444 3333333 233222233333333333 1111 112
Q ss_pred hHHHHHHH-HHHcCCHHHHHHHHHHHHc
Q 004856 608 VWGPLLSA-CKMHSETELAELTAEKLIS 634 (727)
Q Consensus 608 ~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 634 (727)
-|.+.-+. |...+++.+|-.++-..+.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 23333333 5556677777776666554
No 473
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.59 E-value=1.9e+02 Score=28.01 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.++.+.++++.|....++.+.++|.++.-..--+-+|.+.|-..-|++-+....+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34788888999999999999999988877778888888888888888877764333
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.80 E-value=7.9e+02 Score=25.41 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=32.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHH----HHHHHHHHh--cCCHHHHHHHHHH
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITF----LGLLTACVN--AGLVEEGRIIFKE 563 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~--~g~~~~a~~~~~~ 563 (727)
+..+.+.+++..|.++|+++.....+|....+ ..+..+|.. .-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 33556778888888888888877655544432 233333332 2345666666654
No 475
>PRK02287 hypothetical protein; Provisional
Probab=23.72 E-value=5.1e+02 Score=23.16 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCCHHHHHHHHHH
Q 004856 577 YASMVNLLGRAGHMDEARELVKDMPFKPDARVW-GPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
..+++-++.-.|..++|.++++....-++.... ..++..|.+..+.++..++-++
T Consensus 110 vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~ 165 (171)
T PRK02287 110 VEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKE 165 (171)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 344444444555555555555544333333222 2234445444444444444333
No 476
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.69 E-value=5e+02 Score=27.25 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=27.7
Q ss_pred HHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 597 VKDMPFKPDA--RVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 597 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
|....++|.. .+..+-+..+.+++|+..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 3333445432 35556666688999999999999999999884
No 477
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.54 E-value=9.7e+02 Score=26.04 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=46.9
Q ss_pred HCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHH
Q 004856 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507 (727)
Q Consensus 428 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (727)
..|+..+......++... .|++..+..+++++...|- ...+. +...+++ + ..+.....
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~-------------~~V~~~l----g-~~~~~~i~ 250 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLI-------------ADVKTML----G-TIEPLLLF 250 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCH-------------HHHHHHH----C-CCCHHHHH
Confidence 456666655555554443 4777777777665544321 00000 1111111 1 33444444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (727)
.++.++.. |+.+.++.++++|.+.|..|.
T Consensus 251 ~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 251 DILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 55555444 778888888888888887765
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.50 E-value=3.3e+02 Score=28.37 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTK-----------TVVSWSSMIKGYVTHDQSLEALRLFSEMK 427 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 427 (727)
...|++.++-.||+..|.++++.+.-. .+.++--+.-+|...+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888889999999988876521 33456667788888899999999887764
No 479
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=22.99 E-value=2e+02 Score=18.18 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=22.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 641 GNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+|..|+.+-...+++++|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888898999999998887776543
No 480
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.70 E-value=4.1e+02 Score=21.43 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=12.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMK 427 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~ 427 (727)
++..|...++.++|..-+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4455555566666666665554
No 481
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.60 E-value=7.7e+02 Score=24.52 Aligned_cols=59 Identities=19% Similarity=0.047 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
....+.....+.|..+.-..+++.... .++...-..++.+++...+.+...++++....
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~-~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKN-STSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHT-TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhc-cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 333334444444444443333333332 23344444455555555555554555555444
No 482
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.49 E-value=7.7e+02 Score=24.49 Aligned_cols=94 Identities=7% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----------CCHHH
Q 004856 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA----------GHMDE 592 (727)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~ 592 (727)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+.+.+.+|+.+. .|..-|..|+..|+.. |++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~------sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL------SDPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh------cChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHH
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKMHSETE 623 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 623 (727)
-.++++..+ .-|....-.+.+.++.....+
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k~~~ 366 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVADSLRDKKHRS 366 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhccccC
No 483
>PRK14700 recombination factor protein RarA; Provisional
Probab=22.42 E-value=7.7e+02 Score=24.45 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 406 MIKGYVT---HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 406 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
+|+++.+ -.+.+.|+-.+.+|.+.|-.|....-..++.++-..|.
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 4555544 57889999999999999988888777777777777663
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.36 E-value=6.8e+02 Score=27.74 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=27.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCH
Q 004856 339 AAVSSISTMKNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDL 385 (727)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~ 385 (727)
+++.+|...|++-.+.++++...... -+.=...+|..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 67777777777777777777666542 122223355555555566653
No 485
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=22.35 E-value=4.4e+02 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=18.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 546 TACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
..+...|+.-+|+++.+++...+|-..+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 4466778888888888887766544333
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.24 E-value=9.2e+02 Score=25.29 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=30.5
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 506 WNSMISAYAK---HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 506 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
+..+++++.+ .++.+.|+..+.+|.+.|..|....-..+..++...
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 3344555544 478999999999999988777765555554444333
No 487
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=21.91 E-value=7.6e+02 Score=24.16 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-------CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG-------LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR---- 586 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 586 (727)
+..+|...|++..+.|..+...+...+...+.... +...|...+.++... + +......|...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCC
Confidence 67788888888887774443222333334333321 223677777777765 3 33344444555533
Q ss_pred cCCHHHHHHHHHhC
Q 004856 587 AGHMDEARELVKDM 600 (727)
Q Consensus 587 ~g~~~~A~~~~~~~ 600 (727)
..+.++|..+|.+.
T Consensus 204 ~~d~~~A~~wy~~A 217 (292)
T COG0790 204 PRDLKKAFRWYKKA 217 (292)
T ss_pred CcCHHHHHHHHHHH
Confidence 34778888888877
No 488
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.55 E-value=9.5e+02 Score=25.20 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=77.6
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC
Q 004856 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282 (727)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (727)
.-|.++...| ..+++.+....... ++...+.....++....+.. +...+...+ -.++..+....+.++.+.+
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~-~~~~L~~~L---~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDAL-DLRSVLAVL---QAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChH-HHHHHHHHh---cCCCHHHHHHHHHHHhcCC
Confidence 3467777777 56777666665432 23333433333333222222 222222222 2345556677777777777
Q ss_pred ChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 004856 283 SLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLR 362 (727)
Q Consensus 283 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (727)
..+....+...+...+...-...+.++...+. .+...+....+ .+|...-...+.++...+..+....+ ..+
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L-~~a-- 186 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTL-RLY-- 186 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHH-HHH--
Confidence 66666665555555555555455555544331 22333333332 34444444555555554443222221 111
Q ss_pred hCCCCChhHHHHHHHHHHhcCC
Q 004856 363 NGSDYQVSVHNSLIDMYCECED 384 (727)
Q Consensus 363 ~g~~~~~~~~~~li~~~~~~g~ 384 (727)
--..|..+-..-+.+....|.
T Consensus 187 -l~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 187 -LRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -HcCCCHHHHHHHHHHHHHcCC
Confidence 113444444555555555555
No 489
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.41 E-value=4.3e+02 Score=26.10 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 375 LIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
++..+.+..++....+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444442 233334456667778888888888777654
No 490
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=21.27 E-value=6.4e+02 Score=23.08 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=48.5
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC--
Q 004856 390 KIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLN-- 467 (727)
Q Consensus 390 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-- 467 (727)
.+.++-.++-.+.|.....+-++.-..+++-+.|- -..=.+++-.|.+.-++.+++++++.+.+..+.
T Consensus 97 ~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 97 ALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444444556555555555544444333221 011234555666777777888877777654331
Q ss_pred ------------chHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 468 ------------SLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 468 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
+.-.+.|.-...+.+.|.++.|..++++
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 2223344444455555555555555553
No 491
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.09 E-value=1.2e+03 Score=26.51 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=47.3
Q ss_pred HCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHH
Q 004856 428 LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWN 507 (727)
Q Consensus 428 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (727)
..|+..+......++..+ .|++..+..+++++...|-. ..+. +....+ .+ ..+.....
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g--~It~-------------e~V~~l----LG-~~d~~~If 250 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSG--KVAE-------------NDVRQM----IG-AVDKQYLY 250 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCC--CcCH-------------HHHHHH----Hc-ccCHHHHH
Confidence 346666666666665544 47777777777665543310 0011 111111 11 22333344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (727)
.++.++.. ++...++.+++++...|+.+.
T Consensus 251 ~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 251 ELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 45555544 778888888888888776554
No 492
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.92 E-value=1.1e+02 Score=30.52 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=40.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A 593 (727)
..|.++.|++.|...+... +|....|..-.+++.+.+++..|++=+.... .+.||.. -|-.=..+-.-.|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchHHH
Confidence 3455666666666665532 3345555555566666666666665555544 2344422 222212222234555555
Q ss_pred HHHHHhC
Q 004856 594 RELVKDM 600 (727)
Q Consensus 594 ~~~~~~~ 600 (727)
...+...
T Consensus 202 a~dl~~a 208 (377)
T KOG1308|consen 202 AHDLALA 208 (377)
T ss_pred HHHHHHH
Confidence 5555444
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.68 E-value=2.4e+02 Score=23.01 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCCh
Q 004856 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSL 249 (727)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 249 (727)
.++..+...+..-.|-++++.+.+.+..++..|....|+.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 35566666677778888888888887777777777777666666543
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=8.3e+02 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
...+..+.+.|++.++.+.+.+...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444455555555555555555444
No 495
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.09 E-value=7.4e+02 Score=23.37 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 585 (727)
|...+.++-...+ .+-.+.++.+-.-.+.|+.... ++.++...|+.+.|..+++... ..-.+......++.. .
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-H
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHH
Q 004856 586 RAGHMDEARELVKDMPFKPDARVWGPLLSACKMHS-ETELAELTAE 630 (727)
Q Consensus 586 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~ 630 (727)
.+|.+.||..+.+...-+-....|..++..|.... +...+..+..
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHh
Done!