Query 004856
Match_columns 727
No_of_seqs 774 out of 4240
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 07:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-42 8.4E-47 384.2 36.4 499 73-651 61-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.5E-41 1.9E-45 373.3 40.6 481 176-669 63-579 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.2E-27 2.1E-31 248.7 23.8 186 401-587 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9E-25 3.1E-29 228.4 40.0 375 240-655 6-388 (388)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.7E-24 2E-28 222.3 42.8 354 306-669 6-368 (388)
6 4g26_A Pentatricopeptide repea 99.9 5.7E-27 1.9E-31 248.9 19.6 213 317-551 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.2E-22 1.1E-26 217.6 32.9 439 200-669 8-478 (514)
8 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.6E-25 206.8 35.8 422 199-669 26-491 (537)
9 2y4t_A DNAJ homolog subfamily 99.9 2.5E-20 8.4E-25 198.9 36.7 337 298-665 25-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.5E-20 5.3E-25 204.2 32.5 449 98-646 8-489 (514)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4.1E-24 193.5 34.5 306 334-669 26-358 (450)
12 3fp2_A TPR repeat-containing p 99.8 1.4E-18 4.7E-23 189.9 30.0 410 197-644 58-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.8E-17 6.3E-22 170.5 36.0 306 334-669 3-335 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 6.3E-15 2.1E-19 165.4 54.7 315 298-653 984-1327(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 5.9E-17 2E-21 166.7 35.4 324 299-653 3-353 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 6.6E-14 2.3E-18 157.2 57.8 402 65-517 985-1415(1630)
17 3hym_B Cell division cycle pro 99.8 7.1E-17 2.4E-21 164.0 29.4 289 366-657 19-322 (330)
18 1b89_A Protein (clathrin heavy 99.8 2.6E-17 9E-22 166.0 23.7 281 77-391 15-304 (449)
19 1b89_A Protein (clathrin heavy 99.8 2.5E-17 8.7E-22 166.1 22.5 282 182-495 17-307 (449)
20 2xm6_A Protein corresponding t 99.8 2E-15 6.9E-20 162.4 38.2 366 267-652 38-452 (490)
21 2ooe_A Cleavage stimulation fa 99.8 3.9E-15 1.3E-19 161.8 40.9 412 232-669 12-492 (530)
22 3hym_B Cell division cycle pro 99.8 2.9E-16 1E-20 159.5 28.3 267 398-669 20-299 (330)
23 1fch_A Peroxisomal targeting s 99.8 1.1E-16 3.9E-21 165.4 24.5 281 379-665 35-355 (368)
24 2ooe_A Cleavage stimulation fa 99.7 6.3E-15 2.1E-19 160.2 37.3 410 195-638 10-495 (530)
25 2xm6_A Protein corresponding t 99.7 3.1E-14 1E-18 153.1 42.0 354 296-671 36-434 (490)
26 4eqf_A PEX5-related protein; a 99.7 1.5E-16 5E-21 164.4 20.9 261 399-665 64-352 (365)
27 3mkr_A Coatomer subunit epsilo 99.7 4E-15 1.4E-19 147.4 28.7 268 379-662 9-287 (291)
28 1fch_A Peroxisomal targeting s 99.7 9.6E-16 3.3E-20 158.4 22.8 241 369-633 98-357 (368)
29 3mkr_A Coatomer subunit epsilo 99.7 4.3E-15 1.5E-19 147.1 25.9 248 407-669 6-264 (291)
30 4g1t_A Interferon-induced prot 99.7 1.1E-14 3.9E-19 155.9 31.2 332 335-679 95-469 (472)
31 3cv0_A Peroxisome targeting si 99.7 1.8E-15 6.2E-20 153.4 23.4 259 403-666 24-312 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.7E-22 178.9 8.3 151 60-212 122-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 9E-17 3.1E-21 174.7 9.7 166 465-633 122-308 (1134)
34 4eqf_A PEX5-related protein; a 99.7 3.9E-15 1.3E-19 153.6 21.8 233 434-669 64-310 (365)
35 3cv0_A Peroxisome targeting si 99.6 1E-13 3.5E-18 140.3 25.8 277 298-634 20-314 (327)
36 2pl2_A Hypothetical conserved 99.6 4.8E-14 1.6E-18 133.2 20.7 195 467-666 2-211 (217)
37 3uq3_A Heat shock protein STI1 99.6 1.1E-13 3.9E-18 134.6 21.8 225 401-669 6-236 (258)
38 4g1t_A Interferon-induced prot 99.6 1.4E-13 4.8E-18 147.5 24.4 383 232-647 50-471 (472)
39 3uq3_A Heat shock protein STI1 99.6 1.4E-13 4.8E-18 134.0 21.8 233 369-647 5-254 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.2E-13 1.1E-17 132.9 21.5 242 413-663 18-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-12 5E-17 137.8 25.6 374 241-668 11-420 (452)
42 3u4t_A TPR repeat-containing p 99.5 6.2E-13 2.1E-17 130.6 21.2 244 374-654 8-269 (272)
43 4gyw_A UDP-N-acetylglucosamine 99.5 1.3E-13 4.4E-18 152.5 17.4 245 470-721 9-277 (723)
44 2h6f_A Protein farnesyltransfe 99.5 2.6E-12 8.8E-17 131.5 22.3 246 400-653 97-366 (382)
45 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-12 9.2E-17 124.4 21.4 198 470-669 37-238 (252)
46 2ho1_A Type 4 fimbrial biogene 99.5 1.8E-11 6.2E-16 118.5 26.3 207 400-644 37-247 (252)
47 2vq2_A PILW, putative fimbrial 99.5 5.3E-12 1.8E-16 119.8 21.9 199 469-669 7-211 (225)
48 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-12 6.1E-17 124.9 18.8 198 469-669 22-222 (243)
49 1ouv_A Conserved hypothetical 99.5 2.8E-11 9.6E-16 118.9 27.5 228 399-670 5-252 (273)
50 2pl2_A Hypothetical conserved 99.5 6.9E-12 2.4E-16 118.3 21.6 193 402-600 7-211 (217)
51 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-12 4.8E-17 125.6 17.1 215 400-653 23-240 (243)
52 3e4b_A ALGK; tetratricopeptide 99.5 6.6E-12 2.3E-16 132.7 23.3 189 471-671 177-389 (452)
53 1ouv_A Conserved hypothetical 99.4 2.9E-11 9.8E-16 118.8 26.2 224 368-638 5-254 (273)
54 2h6f_A Protein farnesyltransfe 99.4 6E-12 2E-16 128.8 21.5 228 436-669 98-348 (382)
55 2vq2_A PILW, putative fimbrial 99.4 4E-11 1.4E-15 113.7 25.9 209 400-646 8-222 (225)
56 3u4t_A TPR repeat-containing p 99.4 2.1E-11 7.1E-16 119.6 24.0 234 334-606 3-254 (272)
57 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.4E-16 113.1 20.9 164 502-669 4-170 (184)
58 4a1s_A PINS, partner of inscut 99.4 2.2E-12 7.4E-17 135.4 17.0 262 406-669 54-372 (411)
59 3sf4_A G-protein-signaling mod 99.4 7.3E-12 2.5E-16 130.9 19.6 271 369-639 9-340 (406)
60 1xnf_A Lipoprotein NLPI; TPR, 99.4 7.5E-12 2.6E-16 123.0 18.3 220 446-669 16-244 (275)
61 3ro2_A PINS homolog, G-protein 99.4 6.3E-12 2.2E-16 127.4 17.9 262 406-669 11-332 (338)
62 4abn_A Tetratricopeptide repea 99.4 2.9E-12 9.9E-17 136.4 15.9 193 469-665 101-317 (474)
63 4e6h_A MRNA 3'-END-processing 99.4 3.9E-09 1.4E-13 115.3 38.2 218 418-640 327-575 (679)
64 3sf4_A G-protein-signaling mod 99.4 1E-11 3.5E-16 129.8 16.9 269 332-600 7-333 (406)
65 2ond_A Cleavage stimulation fa 99.3 4.4E-10 1.5E-14 112.4 27.0 221 417-641 33-276 (308)
66 3vtx_A MAMA; tetratricopeptide 99.3 3.6E-11 1.2E-15 110.1 17.4 168 469-639 4-174 (184)
67 4a1s_A PINS, partner of inscut 99.3 2.4E-11 8.3E-16 127.3 16.5 266 340-637 54-374 (411)
68 3ulq_A Response regulator aspa 99.3 9.7E-11 3.3E-15 121.4 20.2 223 445-668 113-367 (383)
69 4e6h_A MRNA 3'-END-processing 99.3 5.4E-09 1.8E-13 114.2 34.2 437 212-670 46-571 (679)
70 2ond_A Cleavage stimulation fa 99.3 5E-10 1.7E-14 111.9 23.1 215 452-671 33-272 (308)
71 3ro2_A PINS homolog, G-protein 99.3 7.7E-11 2.6E-15 119.3 16.9 134 504-637 184-334 (338)
72 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-11 3.7E-16 124.2 10.2 244 400-668 27-306 (311)
73 3as5_A MAMA; tetratricopeptide 99.3 3.3E-10 1.1E-14 103.5 19.1 162 505-669 10-173 (186)
74 4abn_A Tetratricopeptide repea 99.2 1.9E-10 6.5E-15 122.3 19.2 180 485-669 83-287 (474)
75 3ulq_A Response regulator aspa 99.2 2.2E-10 7.4E-15 118.7 19.1 231 406-636 109-369 (383)
76 3nf1_A KLC 1, kinesin light ch 99.2 2.1E-11 7E-16 122.2 11.0 242 368-638 26-310 (311)
77 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.7E-14 99.2 20.5 170 470-642 8-180 (186)
78 1hz4_A MALT regulatory protein 99.2 7.3E-09 2.5E-13 106.7 27.9 261 409-669 23-322 (373)
79 4i17_A Hypothetical protein; T 99.2 7.2E-10 2.5E-14 105.4 18.4 206 433-650 5-224 (228)
80 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.8E-14 104.0 19.7 189 469-669 6-209 (228)
81 3q15_A PSP28, response regulat 99.2 7.1E-10 2.4E-14 114.6 19.3 223 445-668 111-364 (378)
82 3q15_A PSP28, response regulat 99.1 3.6E-08 1.2E-12 101.7 27.3 229 406-635 107-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.1 1.4E-09 4.6E-14 120.5 15.8 164 500-668 5-173 (723)
84 1qqe_A Vesicular transport pro 99.1 4.6E-09 1.6E-13 103.9 17.6 215 384-639 32-273 (292)
85 3edt_B KLC 2, kinesin light ch 99.0 1.2E-09 4.2E-14 107.3 12.8 165 504-668 86-280 (283)
86 3mv2_B Coatomer subunit epsilo 99.0 5.7E-08 2E-12 94.0 23.9 176 489-669 85-282 (310)
87 1hz4_A MALT regulatory protein 99.0 1.7E-07 5.9E-12 96.3 28.4 162 439-600 139-319 (373)
88 3qky_A Outer membrane assembly 99.0 2.1E-08 7.1E-13 97.4 20.1 202 470-714 15-247 (261)
89 3qky_A Outer membrane assembly 99.0 1.3E-08 4.6E-13 98.8 17.3 205 433-658 13-250 (261)
90 2vsy_A XCC0866; transferase, g 99.0 1.7E-08 5.9E-13 110.4 19.9 217 483-708 2-230 (568)
91 1qqe_A Vesicular transport pro 99.0 1E-08 3.4E-13 101.5 15.6 201 450-665 32-265 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 99.0 5E-08 1.7E-12 92.2 19.9 182 471-672 5-216 (225)
93 3edt_B KLC 2, kinesin light ch 98.9 2E-08 7E-13 98.5 17.5 166 470-635 85-281 (283)
94 4ga2_A E3 SUMO-protein ligase 98.9 1.1E-09 3.8E-14 96.1 7.3 139 512-655 6-149 (150)
95 3mv2_B Coatomer subunit epsilo 98.9 1E-07 3.5E-12 92.2 20.9 243 379-643 23-290 (310)
96 2fo7_A Synthetic consensus TPR 98.9 6E-08 2.1E-12 82.7 16.9 130 505-637 3-134 (136)
97 2fo7_A Synthetic consensus TPR 98.9 4.5E-08 1.5E-12 83.5 15.7 128 540-669 3-132 (136)
98 2pzi_A Probable serine/threoni 98.9 6.9E-09 2.4E-13 115.5 12.0 191 446-642 402-609 (681)
99 4ga2_A E3 SUMO-protein ligase 98.8 5.9E-09 2E-13 91.4 8.3 123 544-669 3-129 (150)
100 3qou_A Protein YBBN; thioredox 98.8 6.7E-08 2.3E-12 95.2 16.9 172 489-667 105-282 (287)
101 3urz_A Uncharacterized protein 98.8 8.3E-08 2.8E-12 89.4 16.5 124 509-638 60-189 (208)
102 2r5s_A Uncharacterized protein 98.8 2.9E-08 9.8E-13 89.8 12.2 156 507-667 10-171 (176)
103 3rjv_A Putative SEL1 repeat pr 98.8 3.4E-07 1.2E-11 85.4 19.1 173 489-671 5-199 (212)
104 4gco_A Protein STI-1; structur 98.8 4.8E-08 1.6E-12 82.5 11.4 113 534-648 8-123 (126)
105 3gyz_A Chaperone protein IPGC; 98.7 4.6E-08 1.6E-12 85.2 10.4 100 570-669 31-133 (151)
106 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-07 3.6E-12 94.9 14.4 222 413-662 4-254 (307)
107 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4.1E-12 103.6 16.0 151 516-671 2-159 (568)
108 4gco_A Protein STI-1; structur 98.7 9.5E-08 3.2E-12 80.6 11.7 100 570-669 8-110 (126)
109 2pzi_A Probable serine/threoni 98.7 2.6E-07 8.7E-12 102.9 18.6 182 411-600 402-602 (681)
110 2uy1_A Cleavage stimulation fa 98.7 1.8E-05 6.1E-10 83.9 31.3 205 417-634 196-412 (493)
111 3dra_A Protein farnesyltransfe 98.7 1.9E-06 6.4E-11 84.3 21.9 149 517-668 124-286 (306)
112 3urz_A Uncharacterized protein 98.7 5.4E-07 1.9E-11 83.8 17.3 188 402-614 6-198 (208)
113 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.5E-07 1.5E-11 85.6 16.7 186 435-641 4-219 (225)
114 3qou_A Protein YBBN; thioredox 98.7 8.1E-07 2.8E-11 87.3 18.2 155 439-599 121-280 (287)
115 2r5s_A Uncharacterized protein 98.7 2E-07 6.8E-12 84.2 12.4 156 474-634 10-172 (176)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 1.5E-07 5.1E-12 93.7 12.1 196 448-667 4-222 (307)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1E-06 3.5E-11 82.2 16.1 90 505-600 8-97 (213)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.5E-06 8.7E-11 79.5 18.5 145 473-639 9-154 (213)
119 3u3w_A Transcriptional activat 98.6 5.6E-06 1.9E-10 81.7 21.6 161 508-668 80-265 (293)
120 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.2E-12 92.2 9.8 192 470-669 4-199 (281)
121 2qfc_A PLCR protein; TPR, HTH, 98.6 2E-06 6.8E-11 84.9 17.8 163 504-667 76-264 (293)
122 2vgx_A Chaperone SYCD; alterna 98.6 2E-07 6.8E-12 81.2 9.1 96 574-669 21-118 (148)
123 1a17_A Serine/threonine protei 98.5 1.3E-06 4.6E-11 77.5 14.7 127 540-668 15-145 (166)
124 3dra_A Protein farnesyltransfe 98.5 4.3E-05 1.5E-09 74.7 26.2 228 415-648 48-301 (306)
125 3rjv_A Putative SEL1 repeat pr 98.5 6.4E-06 2.2E-10 76.7 19.4 160 399-567 17-197 (212)
126 1na0_A Designed protein CTPR3; 98.5 1.7E-06 5.9E-11 72.3 14.1 114 539-654 10-125 (125)
127 4f3v_A ESX-1 secretion system 98.5 2.4E-06 8.1E-11 81.6 16.4 183 482-669 18-237 (282)
128 3u3w_A Transcriptional activat 98.5 2.1E-05 7.1E-10 77.5 23.1 161 475-635 80-266 (293)
129 2vyi_A SGTA protein; chaperone 98.5 1.8E-06 6.2E-11 72.9 13.4 117 538-656 12-130 (131)
130 2uy1_A Cleavage stimulation fa 98.5 1.6E-05 5.3E-10 84.3 23.3 374 245-668 6-412 (493)
131 1p5q_A FKBP52, FK506-binding p 98.5 9.5E-07 3.3E-11 89.0 12.9 94 574-667 196-292 (336)
132 2lni_A Stress-induced-phosphop 98.5 1.7E-06 5.8E-11 73.4 12.4 114 540-655 18-133 (133)
133 2vgx_A Chaperone SYCD; alterna 98.5 5.1E-07 1.8E-11 78.6 9.1 114 526-643 10-126 (148)
134 4f3v_A ESX-1 secretion system 98.5 2.2E-06 7.6E-11 81.8 14.0 137 506-647 105-248 (282)
135 3upv_A Heat shock protein STI1 98.4 1.4E-06 4.8E-11 73.4 11.3 95 575-669 5-101 (126)
136 3gyz_A Chaperone protein IPGC; 98.4 1.6E-06 5.4E-11 75.4 11.5 105 534-640 31-138 (151)
137 2xcb_A PCRH, regulatory protei 98.4 1.8E-06 6.2E-11 74.5 11.3 95 575-669 19-115 (142)
138 2e2e_A Formate-dependent nitri 98.4 2.7E-06 9.4E-11 76.6 13.0 124 514-640 21-149 (177)
139 2qfc_A PLCR protein; TPR, HTH, 98.4 1.1E-05 3.8E-10 79.5 18.2 164 472-635 77-266 (293)
140 2xcb_A PCRH, regulatory protei 98.4 1.6E-06 5.5E-11 74.9 9.6 107 538-646 18-126 (142)
141 3q7a_A Farnesyltransferase alp 98.3 6.2E-05 2.1E-09 74.4 21.6 186 481-669 99-331 (349)
142 2e2e_A Formate-dependent nitri 98.3 4.4E-06 1.5E-10 75.2 12.5 122 481-605 21-147 (177)
143 1hxi_A PEX5, peroxisome target 98.3 1.4E-06 4.7E-11 72.8 8.2 94 576-669 19-114 (121)
144 2dba_A Smooth muscle cell asso 98.3 9.1E-06 3.1E-10 70.3 13.6 110 537-649 27-142 (148)
145 3gw4_A Uncharacterized protein 98.3 1.3E-05 4.5E-10 73.7 15.3 84 482-565 4-93 (203)
146 2kck_A TPR repeat; tetratricop 98.3 3.5E-06 1.2E-10 68.8 10.2 97 574-670 6-107 (112)
147 1elw_A TPR1-domain of HOP; HOP 98.3 1.3E-05 4.5E-10 66.0 13.7 108 540-649 6-115 (118)
148 4gcn_A Protein STI-1; structur 98.3 2.5E-06 8.4E-11 71.9 9.1 94 576-669 10-112 (127)
149 3q49_B STIP1 homology and U bo 98.3 6.6E-06 2.2E-10 70.3 11.8 97 573-669 8-106 (137)
150 3upv_A Heat shock protein STI1 98.3 5.9E-06 2E-10 69.4 11.3 108 540-649 6-121 (126)
151 3gw4_A Uncharacterized protein 98.3 7.1E-06 2.4E-10 75.6 12.8 96 469-564 25-133 (203)
152 2c2l_A CHIP, carboxy terminus 98.3 9.5E-06 3.2E-10 79.3 14.1 186 440-635 9-199 (281)
153 3sz7_A HSC70 cochaperone (SGT) 98.3 4.2E-06 1.4E-10 74.2 10.5 109 537-647 10-120 (164)
154 3sz7_A HSC70 cochaperone (SGT) 98.3 8E-06 2.7E-10 72.4 12.3 95 502-600 10-105 (164)
155 1elw_A TPR1-domain of HOP; HOP 98.3 1.2E-05 4E-10 66.2 12.6 97 573-669 3-101 (118)
156 1a17_A Serine/threonine protei 98.3 1.3E-05 4.6E-10 70.8 13.8 127 505-634 15-145 (166)
157 2fbn_A 70 kDa peptidylprolyl i 98.2 7.2E-06 2.5E-10 75.4 12.1 95 575-669 89-186 (198)
158 2dba_A Smooth muscle cell asso 98.2 1.5E-05 5.1E-10 69.0 13.1 101 501-605 26-131 (148)
159 2hr2_A Hypothetical protein; a 98.2 4.9E-06 1.7E-10 71.5 9.0 62 608-669 59-131 (159)
160 1na0_A Designed protein CTPR3; 98.2 3.8E-05 1.3E-09 63.8 14.5 90 475-565 14-104 (125)
161 3rkv_A Putative peptidylprolyl 98.2 1E-05 3.4E-10 71.6 11.3 63 607-669 64-126 (162)
162 3dss_A Geranylgeranyl transfer 98.2 0.0003 1E-08 69.1 22.3 181 486-669 90-304 (331)
163 2lni_A Stress-induced-phosphop 98.2 4.5E-05 1.5E-09 64.4 14.5 94 503-600 16-110 (133)
164 3q7a_A Farnesyltransferase alp 98.2 0.0013 4.4E-08 65.0 26.4 233 409-647 63-344 (349)
165 4gcn_A Protein STI-1; structur 98.1 1.5E-05 5E-10 67.1 10.8 104 504-637 9-114 (127)
166 2xev_A YBGF; tetratricopeptide 98.1 1.4E-05 4.7E-10 67.3 10.7 89 581-669 9-105 (129)
167 1wao_1 Serine/threonine protei 98.1 2.9E-05 1E-09 82.1 15.1 116 478-598 14-134 (477)
168 3q49_B STIP1 homology and U bo 98.1 2.2E-05 7.7E-10 66.8 11.8 99 538-638 9-109 (137)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.4E-05 8.2E-10 82.3 14.1 144 503-668 268-414 (457)
170 2vyi_A SGTA protein; chaperone 98.1 4.1E-05 1.4E-09 64.2 12.9 113 473-588 15-128 (131)
171 3dss_A Geranylgeranyl transfer 98.1 0.0007 2.4E-08 66.5 22.8 194 451-649 90-318 (331)
172 1dce_A Protein (RAB geranylger 98.1 0.00011 3.6E-09 79.2 18.5 171 484-658 43-244 (567)
173 1elr_A TPR2A-domain of HOP; HO 98.0 2E-05 6.7E-10 66.3 9.8 106 542-650 8-122 (131)
174 1p5q_A FKBP52, FK506-binding p 98.0 4.1E-05 1.4E-09 76.9 13.6 86 504-593 197-283 (336)
175 1hxi_A PEX5, peroxisome target 98.0 2.3E-05 7.8E-10 65.2 9.8 96 542-639 21-118 (121)
176 2kck_A TPR repeat; tetratricop 98.0 2.7E-05 9.2E-10 63.3 10.0 97 541-639 9-110 (112)
177 1wao_1 Serine/threonine protei 98.0 1E-05 3.5E-10 85.6 9.1 115 548-664 16-134 (477)
178 2xev_A YBGF; tetratricopeptide 98.0 6.5E-05 2.2E-09 63.1 12.5 102 544-647 8-117 (129)
179 1ihg_A Cyclophilin 40; ppiase 98.0 3.1E-05 1E-09 78.8 12.0 138 503-662 223-363 (370)
180 2hr2_A Hypothetical protein; a 98.0 1.2E-05 4E-10 69.2 7.4 71 576-646 59-142 (159)
181 3ro3_A PINS homolog, G-protein 98.0 2.4E-05 8.2E-10 68.7 9.4 61 608-668 91-157 (164)
182 3k9i_A BH0479 protein; putativ 98.0 6.4E-06 2.2E-10 68.2 5.1 81 588-668 4-89 (117)
183 4b4t_Q 26S proteasome regulato 98.0 4.8E-05 1.6E-09 79.7 13.0 189 480-668 14-244 (434)
184 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00011 3.6E-09 67.4 13.7 63 607-669 89-151 (198)
185 1elr_A TPR2A-domain of HOP; HO 98.0 2.6E-05 9E-10 65.5 8.9 96 574-669 4-108 (131)
186 3rkv_A Putative peptidylprolyl 97.9 2.6E-05 8.8E-10 68.9 8.3 76 574-649 63-141 (162)
187 4b4t_Q 26S proteasome regulato 97.9 0.00058 2E-08 71.3 19.5 195 377-599 12-241 (434)
188 3ro3_A PINS homolog, G-protein 97.9 7.6E-05 2.6E-09 65.3 10.8 132 505-636 11-159 (164)
189 3n71_A Histone lysine methyltr 97.9 9.2E-05 3.1E-09 77.7 12.9 123 548-670 319-465 (490)
190 2if4_A ATFKBP42; FKBP-like, al 97.9 4.8E-05 1.6E-09 76.5 10.1 145 505-669 181-328 (338)
191 3k9i_A BH0479 protein; putativ 97.8 1E-05 3.5E-10 66.9 4.3 90 552-642 4-97 (117)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 3E-05 1E-09 78.0 8.3 114 539-669 180-293 (338)
193 1ihg_A Cyclophilin 40; ppiase 97.8 0.00014 4.8E-09 73.9 11.9 113 538-669 223-336 (370)
194 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.0001 3.6E-09 77.5 11.3 113 538-669 268-380 (457)
195 2l6j_A TPR repeat-containing p 97.7 6.3E-05 2.1E-09 61.1 7.3 92 573-664 3-102 (111)
196 3ma5_A Tetratricopeptide repea 97.7 0.00016 5.5E-09 57.5 8.6 65 605-669 6-70 (100)
197 1na3_A Designed protein CTPR2; 97.7 0.00017 6E-09 55.9 8.5 81 574-654 9-91 (91)
198 2kat_A Uncharacterized protein 97.6 0.00011 3.9E-09 60.2 7.4 77 593-669 4-82 (115)
199 3n71_A Histone lysine methyltr 97.6 0.00017 5.7E-09 75.7 9.5 114 583-714 318-450 (490)
200 1zu2_A Mitochondrial import re 97.6 3.5E-05 1.2E-09 66.0 3.2 49 622-670 62-121 (158)
201 1dce_A Protein (RAB geranylger 97.5 0.0016 5.3E-08 70.1 16.7 148 517-668 43-220 (567)
202 1klx_A Cysteine rich protein B 97.5 0.001 3.6E-08 56.5 11.5 89 580-670 31-127 (138)
203 3qwp_A SET and MYND domain-con 97.4 0.00045 1.5E-08 71.3 10.0 112 584-713 297-427 (429)
204 3qww_A SET and MYND domain-con 97.4 0.00032 1.1E-08 72.3 8.5 103 588-708 312-432 (433)
205 3lvg_A Clathrin heavy chain 1; 97.4 6.1E-06 2.1E-10 82.3 -4.2 273 80-420 40-324 (624)
206 2l6j_A TPR repeat-containing p 97.3 0.00024 8.3E-09 57.5 5.7 94 502-600 3-104 (111)
207 1zu2_A Mitochondrial import re 97.3 0.00027 9.4E-09 60.5 5.6 101 514-640 13-125 (158)
208 3bee_A Putative YFRE protein; 97.3 0.0011 3.7E-08 51.6 8.4 68 604-671 4-74 (93)
209 1na3_A Designed protein CTPR2; 97.2 0.0025 8.4E-08 49.1 9.6 64 606-669 9-72 (91)
210 2kat_A Uncharacterized protein 97.2 0.0014 4.7E-08 53.5 8.5 77 489-567 4-82 (115)
211 1klx_A Cysteine rich protein B 97.1 0.0059 2E-07 51.7 12.0 112 517-637 9-128 (138)
212 3ly7_A Transcriptional activat 97.1 0.011 3.9E-07 58.2 14.9 136 501-638 192-342 (372)
213 1wy6_A Hypothetical protein ST 97.1 0.047 1.6E-06 44.1 15.5 141 513-672 17-157 (172)
214 3ma5_A Tetratricopeptide repea 96.9 0.0041 1.4E-07 49.2 9.0 64 502-567 6-70 (100)
215 3qww_A SET and MYND domain-con 96.9 0.0053 1.8E-07 63.2 11.3 68 576-643 342-424 (433)
216 3lvg_A Clathrin heavy chain 1; 96.8 0.00046 1.6E-08 69.2 2.8 439 63-559 52-533 (624)
217 3qwp_A SET and MYND domain-con 96.7 0.011 3.9E-07 60.8 12.5 37 608-644 373-414 (429)
218 2kc7_A BFR218_protein; tetratr 96.6 0.0049 1.7E-07 48.4 6.8 64 580-643 6-72 (99)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0098 3.4E-07 46.6 8.6 88 543-640 5-95 (99)
220 3ly7_A Transcriptional activat 96.6 0.026 8.8E-07 55.7 13.0 132 535-670 191-340 (372)
221 3mkq_A Coatomer beta'-subunit; 96.5 0.086 3E-06 59.8 19.0 102 377-495 660-761 (814)
222 1pc2_A Mitochondria fission pr 96.3 0.019 6.4E-07 48.5 9.1 89 553-643 13-108 (152)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.15 5E-06 57.9 19.4 103 479-601 661-763 (814)
224 3u64_A Protein TP_0956; tetrat 96.1 0.016 5.4E-07 54.7 8.3 87 590-676 179-276 (301)
225 2v5f_A Prolyl 4-hydroxylase su 96.0 0.034 1.2E-06 44.1 9.1 72 576-647 7-87 (104)
226 1qsa_A Protein (soluble lytic 95.9 2.3 7.9E-05 45.6 26.4 250 372-634 75-347 (618)
227 3bee_A Putative YFRE protein; 95.9 0.043 1.5E-06 42.4 8.6 68 571-638 3-75 (93)
228 3mkq_B Coatomer subunit alpha; 95.6 1 3.5E-05 39.0 17.1 128 479-632 14-141 (177)
229 1pc2_A Mitochondria fission pr 95.5 0.051 1.7E-06 45.9 8.2 88 518-608 13-106 (152)
230 3mkq_B Coatomer subunit alpha; 95.4 0.71 2.4E-05 40.0 15.2 104 377-497 13-116 (177)
231 4gns_B Protein CSD3, chitin bi 94.3 0.38 1.3E-05 52.6 13.0 52 616-667 347-398 (754)
232 1nzn_A CGI-135 protein, fissio 94.2 0.26 9E-06 39.9 8.9 98 545-644 8-112 (126)
233 1nzn_A CGI-135 protein, fissio 93.7 0.93 3.2E-05 36.7 11.0 95 510-607 8-108 (126)
234 2v5f_A Prolyl 4-hydroxylase su 93.5 0.42 1.4E-05 37.6 9.0 59 542-600 9-72 (104)
235 4ady_A RPN2, 26S proteasome re 93.4 12 0.00042 41.8 32.4 260 343-609 383-664 (963)
236 1wy6_A Hypothetical protein ST 93.3 2.8 9.7E-05 34.1 16.2 139 412-571 19-157 (172)
237 3u64_A Protein TP_0956; tetrat 93.2 1.5 5.1E-05 41.4 13.3 112 484-600 135-266 (301)
238 2wpv_A GET4, UPF0363 protein Y 92.7 7.3 0.00025 37.4 19.8 165 272-462 37-215 (312)
239 1y8m_A FIS1; mitochondria, unk 92.4 2.6 8.8E-05 34.8 12.0 72 571-642 36-113 (144)
240 4h7y_A Dual specificity protei 91.9 1.1 3.6E-05 37.4 9.1 56 588-643 74-131 (161)
241 4h7y_A Dual specificity protei 90.6 1.1 3.6E-05 37.4 7.9 55 618-672 72-126 (161)
242 4ady_A RPN2, 26S proteasome re 90.2 27 0.00093 39.1 33.6 266 277-549 383-672 (963)
243 3o48_A Mitochondria fission 1 89.9 1.6 5.6E-05 35.4 8.4 72 571-642 37-114 (134)
244 3lpz_A GET4 (YOR164C homolog); 89.4 16 0.00055 35.3 22.0 132 272-414 39-181 (336)
245 2p58_C Putative type III secre 88.7 5.1 0.00017 30.4 9.4 86 349-439 22-107 (116)
246 2uwj_G Type III export protein 88.1 4.8 0.00016 30.5 9.0 86 349-439 21-106 (115)
247 2p58_C Putative type III secre 86.8 8.6 0.00029 29.2 9.7 59 479-542 49-107 (116)
248 1v54_E Cytochrome C oxidase po 85.8 6 0.00021 30.2 8.6 63 518-582 25-87 (109)
249 3ffl_A Anaphase-promoting comp 85.8 5 0.00017 34.1 9.3 27 575-601 123-149 (167)
250 3txn_A 26S proteasome regulato 85.0 23 0.0008 35.3 15.4 23 509-531 105-127 (394)
251 2uwj_G Type III export protein 85.0 8.1 0.00028 29.3 8.8 59 479-542 48-106 (115)
252 1zbp_A Hypothetical protein VP 83.7 14 0.00049 34.2 12.1 120 512-642 6-136 (273)
253 2ff4_A Probable regulatory pro 83.4 2.5 8.7E-05 42.5 7.8 67 609-675 174-245 (388)
254 4fhn_B Nucleoporin NUP120; pro 83.3 22 0.00076 41.6 16.8 167 372-556 815-989 (1139)
255 2ff4_A Probable regulatory pro 83.3 7 0.00024 39.3 11.0 70 506-577 174-248 (388)
256 4gns_B Protein CSD3, chitin bi 81.5 7.5 0.00026 42.5 10.9 52 602-654 609-660 (754)
257 4b4t_P 26S proteasome regulato 80.8 52 0.0018 33.6 16.6 188 413-600 29-244 (445)
258 2qx5_A Nucleoporin NIC96; mRNA 80.7 41 0.0014 36.1 16.1 80 406-496 300-382 (661)
259 1wdy_A 2-5A-dependent ribonucl 80.3 36 0.0012 31.7 14.7 47 246-292 192-240 (285)
260 2y69_E Cytochrome C oxidase su 79.3 14 0.00049 29.9 8.9 62 519-582 69-130 (152)
261 1zbp_A Hypothetical protein VP 77.3 12 0.00041 34.7 9.3 56 583-638 6-63 (273)
262 3lpz_A GET4 (YOR164C homolog); 76.8 56 0.0019 31.6 20.7 139 208-361 65-214 (336)
263 1v54_E Cytochrome C oxidase po 74.7 26 0.0009 26.8 8.9 58 590-647 26-86 (109)
264 3ffl_A Anaphase-promoting comp 73.3 29 0.00099 29.5 9.8 54 375-428 26-91 (167)
265 2wpv_A GET4, UPF0363 protein Y 72.6 69 0.0023 30.6 21.4 168 372-567 36-217 (312)
266 1qsa_A Protein (soluble lytic 72.0 1.1E+02 0.0037 32.7 35.3 365 272-660 76-470 (618)
267 3o48_A Mitochondria fission 1 71.6 39 0.0013 27.4 10.7 73 535-608 37-113 (134)
268 1wdy_A 2-5A-dependent ribonucl 70.9 66 0.0023 29.7 14.2 47 347-393 192-240 (285)
269 4b4t_P 26S proteasome regulato 69.9 1E+02 0.0034 31.4 21.6 199 382-598 29-262 (445)
270 4fhn_B Nucleoporin NUP120; pro 69.8 50 0.0017 38.6 14.6 61 609-669 902-967 (1139)
271 1n11_A Ankyrin; clathrin, BAND 66.3 88 0.003 31.5 14.3 16 278-293 219-234 (437)
272 2y69_E Cytochrome C oxidase su 65.1 51 0.0017 26.8 8.9 49 599-647 81-129 (152)
273 1y8m_A FIS1; mitochondria, unk 61.0 69 0.0024 26.4 11.9 71 535-606 36-110 (144)
274 3jxi_A Vanilloid receptor-rela 60.5 21 0.00073 33.0 7.7 24 107-130 13-36 (260)
275 4b4t_R RPN7, 26S proteasome re 59.9 36 0.0012 34.6 9.6 94 540-634 133-236 (429)
276 3esl_A Checkpoint serine/threo 59.6 76 0.0026 27.9 10.1 48 622-669 95-144 (202)
277 4b4t_R RPN7, 26S proteasome re 57.5 45 0.0015 33.8 9.9 99 471-569 132-239 (429)
278 1k1a_A B-cell lymphoma 3-encod 57.0 70 0.0024 28.7 10.6 26 106-131 16-41 (241)
279 3kea_A K1L; tropism, ANK repea 57.0 1.3E+02 0.0043 28.1 12.7 57 70-130 33-89 (285)
280 3ltj_A Alpharep-4; protein eng 56.3 1E+02 0.0034 26.8 18.2 40 275-314 35-74 (201)
281 1k1a_A B-cell lymphoma 3-encod 55.4 63 0.0022 29.0 10.0 87 205-295 13-103 (241)
282 3jxi_A Vanilloid receptor-rela 53.5 26 0.00089 32.3 7.0 56 205-260 9-73 (260)
283 3ltm_A Alpha-REP4; protein eng 52.2 1.2E+02 0.0041 26.5 19.5 91 469-566 94-184 (211)
284 3kea_A K1L; tropism, ANK repea 51.9 77 0.0026 29.7 10.1 14 280-293 138-151 (285)
285 3esl_A Checkpoint serine/threo 51.2 1.3E+02 0.0044 26.5 11.2 85 487-573 61-149 (202)
286 4b4t_S RPN3, 26S proteasome re 45.8 97 0.0033 32.0 9.8 61 65-125 231-299 (523)
287 3ltj_A Alpharep-4; protein eng 45.5 1.5E+02 0.0051 25.6 20.0 78 500-586 118-195 (201)
288 1n11_A Ankyrin; clathrin, BAND 43.8 2.6E+02 0.0088 27.9 14.0 219 57-295 34-269 (437)
289 3hra_A Ankyrin repeat family p 42.5 1.4E+02 0.0047 25.7 9.7 17 76-92 13-29 (201)
290 4a1g_A Mitotic checkpoint seri 42.2 1.5E+02 0.0051 24.7 9.0 48 625-672 84-133 (152)
291 1oyz_A Hypothetical protein YI 41.7 2.1E+02 0.0073 26.3 18.7 248 256-513 25-277 (280)
292 3eu9_A Huntingtin-interacting 40.9 1.3E+02 0.0046 26.6 9.7 23 70-92 44-66 (240)
293 3ltm_A Alpha-REP4; protein eng 39.4 1.9E+02 0.0066 25.1 19.2 92 433-531 93-184 (211)
294 3eu9_A Huntingtin-interacting 37.8 1.4E+02 0.0047 26.5 9.2 13 280-292 118-130 (240)
295 2pnn_A Transient receptor pote 37.5 1.1E+02 0.0038 28.1 8.7 14 76-89 21-34 (273)
296 2wvi_A Mitotic checkpoint seri 36.9 1.9E+02 0.0066 24.4 9.0 47 625-671 79-127 (164)
297 2rfa_A Transient receptor pote 36.6 2.2E+02 0.0075 25.1 10.4 54 239-293 157-219 (232)
298 2zu6_B Programmed cell death p 36.3 1.1E+02 0.0039 29.1 8.2 28 372-399 6-33 (307)
299 4g8k_A 2-5A-dependent ribonucl 35.0 3E+02 0.01 26.1 14.3 104 253-368 219-328 (337)
300 4gq2_M Nucleoporin NUP120; bet 34.8 3.8E+02 0.013 30.4 13.7 32 608-639 899-931 (950)
301 2r9g_A AAA ATPase, central reg 34.8 2.3E+02 0.008 24.8 9.3 61 406-467 17-85 (204)
302 2ion_A PDCD4, programmed cell 33.8 72 0.0025 26.6 5.7 64 372-435 12-80 (152)
303 3d9h_A CDNA FLJ77766, highly s 33.7 1.1E+02 0.0039 28.4 8.1 18 69-86 16-33 (285)
304 3bqo_A Telomeric repeat-bindin 32.1 1.5E+02 0.0052 25.8 7.3 63 590-652 94-163 (211)
305 3d9h_A CDNA FLJ77766, highly s 31.5 2.2E+02 0.0074 26.4 9.6 32 196-232 55-86 (285)
306 2etb_A Transient receptor pote 31.5 1.4E+02 0.0047 27.1 8.1 24 107-130 10-33 (256)
307 2nsz_A Programmed cell death p 31.3 2E+02 0.0069 23.0 10.0 65 372-436 10-79 (129)
308 3hra_A Ankyrin repeat family p 31.0 1.7E+02 0.0059 25.0 8.4 15 354-368 158-172 (201)
309 3ljn_A Hypothetical protein; a 30.7 1.1E+02 0.0037 29.9 7.6 19 376-394 177-195 (364)
310 3ljn_A Hypothetical protein; a 30.5 79 0.0027 30.8 6.6 16 379-394 251-266 (364)
311 4a1g_A Mitotic checkpoint seri 30.2 2.4E+02 0.0081 23.5 10.4 53 520-573 82-135 (152)
312 2zu6_B Programmed cell death p 30.2 75 0.0025 30.3 5.8 73 403-476 169-243 (307)
313 2ion_A PDCD4, programmed cell 29.6 1.4E+02 0.0047 24.9 6.7 63 473-537 12-79 (152)
314 3aji_A 26S proteasome non-ATPa 29.5 2.2E+02 0.0076 25.0 9.1 54 72-130 10-67 (231)
315 3bge_A Predicted ATPase; struc 29.3 2.7E+02 0.0092 24.3 8.4 45 406-450 10-57 (201)
316 4b4t_S RPN3, 26S proteasome re 28.9 1.2E+02 0.0042 31.2 7.4 63 538-600 231-296 (523)
317 3aji_A 26S proteasome non-ATPa 26.6 1.7E+02 0.0058 25.8 7.7 21 102-122 9-29 (231)
318 2d2s_A Exocyst complex compone 26.3 2.1E+02 0.0073 25.9 7.9 88 509-600 24-117 (235)
319 3b7b_A Euchromatic histone-lys 26.1 3.4E+02 0.011 23.9 10.4 36 57-92 31-68 (237)
320 2wvi_A Mitotic checkpoint seri 26.0 3E+02 0.01 23.2 10.8 54 520-574 77-131 (164)
321 1bd8_A P19INK4D CDK4/6 inhibit 25.8 89 0.003 25.6 5.2 15 107-121 10-24 (156)
322 1ya0_A SMG-7 transcript varian 24.9 1.6E+02 0.0056 30.3 7.7 40 621-660 167-206 (497)
323 2rfa_A Transient receptor pote 24.6 2.3E+02 0.0078 25.0 8.2 46 321-366 136-183 (232)
324 2d2s_A Exocyst complex compone 24.6 2E+02 0.0069 26.0 7.5 29 640-668 91-119 (235)
325 3ctd_A Putative ATPase, AAA fa 24.5 3.7E+02 0.013 23.7 8.6 62 405-466 37-106 (213)
326 1bd8_A P19INK4D CDK4/6 inhibit 24.3 1.7E+02 0.0058 23.7 6.7 14 381-394 110-123 (156)
327 4aez_C MAD3, mitotic spindle c 23.0 3.7E+02 0.013 24.0 8.5 53 520-573 131-184 (223)
328 2fe3_A Peroxide operon regulat 22.3 1.8E+02 0.0061 23.9 6.2 41 304-344 26-66 (145)
329 2nsz_A Programmed cell death p 21.1 3.2E+02 0.011 21.8 10.5 63 473-537 10-77 (129)
330 3ygs_P Procaspase 9; apoptosis 20.8 1.2E+02 0.0041 22.9 4.3 37 383-419 51-87 (97)
331 4gq2_M Nucleoporin NUP120; bet 20.7 7.9E+02 0.027 27.8 13.0 124 374-517 815-950 (950)
332 3ygs_P Procaspase 9; apoptosis 20.6 1E+02 0.0035 23.3 3.9 38 79-116 51-88 (97)
333 1ug3_A EIF4GI, eukaryotic prot 20.5 4.6E+02 0.016 25.2 9.7 140 373-528 15-166 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-42 Score=384.17 Aligned_cols=499 Identities=9% Similarity=-0.011 Sum_probs=349.8
Q ss_pred HHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHH
Q 004856 73 DSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEK 152 (727)
Q Consensus 73 ~~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 152 (727)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3466788899999999999999999999999999999999999999999985 56788999999999999999999999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccC-CCC------------------CcccHHHHHHHHHhCC
Q 004856 153 IHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRK-FKD------------------LKSRWNSLISLAVQNG 212 (727)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~-~~~------------------~~~~~~~li~~~~~~g 212 (727)
+++.+.. .+++..+++.++.+|.++ |++++|..+ +++ +.. +..+|+.++.+|.+.|
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKL--YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHT--TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHH--hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9998754 367889999999999999 999999999 744 433 4788999999999999
Q ss_pred CchhHHHHHHHHHhCCCCCCh-hhHHHHHHHhcccCChhH--HHHH-HHHHHHhcCCCChhHHhHHHHHhhcCCChHHHH
Q 004856 213 KSEKSFELFKLMRMEGAEFDS-GTLINLLRSTVELKSLEL--GRIV-HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAK 288 (727)
Q Consensus 213 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 288 (727)
++++|+++|++|.+.+ |+. ..+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.
T Consensus 215 ~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 9999999999998864 543 344444444433322221 1111 444455555555667788889999999999999
Q ss_pred HHHhcCCC--CCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCC
Q 004856 289 MLFDKMSD--KDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSD 366 (727)
Q Consensus 289 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 366 (727)
++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 99999987 788999999999999999999999999998764 2255566666666666666666666666665432 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004856 367 YQVSVHNSLIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILP 443 (727)
Q Consensus 367 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 443 (727)
.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------- 437 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------- 437 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 344445555555555555555555554432 1233344444444444444444444444443321
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHH
Q 004856 444 ACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 444 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 523 (727)
+.+..+|+.++.+|.+.|++++|+
T Consensus 438 --------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 438 --------------------------------------------------------QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp --------------------------------------------------------TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred --------------------------------------------------------ccchHHHHHHHHHHHHcCCHHHHH
Confidence 235566667777777777777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS--QEHYASMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 598 (727)
++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777776642 3356677777777777777777777777776532 44666 5678888888888888888888887
Q ss_pred hC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 599 DM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 599 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
++ ...| +..+|..+...|...|++++|...++++++++|+++.++..++++|.
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 76 3334 67788888888999999999999999999999999999999888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.5e-41 Score=373.31 Aligned_cols=481 Identities=10% Similarity=-0.007 Sum_probs=402.7
Q ss_pred hhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHH
Q 004856 176 YIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRI 254 (727)
Q Consensus 176 y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 254 (727)
+.++ |....+... +.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..
T Consensus 63 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTD--GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccc--CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 4455 777777787 888888999999999999999999999999999985 46888999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC-------------------CeehHHHHHHHHHhcCCc
Q 004856 255 VHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK-------------------DRVVWNIMISAYYQSGFP 315 (727)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~ 315 (727)
+++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988654 678999999999999999999999999965433 378999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChh-hHHHHHHHhhcCCChHHH--HHH-HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 004856 316 KESLELLMCMVRSGFRADLF-TAIAAVSSISTMKNIEWG--KQM-HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKI 391 (727)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 391 (727)
++|++.|++|.+.+ |+.. .+..+...+...+..+.. ..+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998864 5443 344444333332222111 111 34444444455566778888999999999999999
Q ss_pred HhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCch
Q 004856 392 FDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSL 469 (727)
Q Consensus 392 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (727)
|+++.+ +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 789999999999999999999999999999865 3367788999999999999999999999998765 567
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
..+++.++.+|.+.|++++|.++|+++.... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999865434 468899999999999999999999999999864 44789999999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HhhHHHHHHHHHHc
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-------PFKPD--ARVWGPLLSACKMH 619 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~ 619 (727)
.+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..+..+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999975 3446889999999999999999999999988 44787 67999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 620 SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|++++|+..++++++.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998876
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=6.2e-27 Score=248.66 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCchHh
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA---------LEHVKYLHGYSMKLGLNSLSS 471 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 471 (727)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
+|+++|.+|++.|++++|.++|++|... .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998643 79999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA 587 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 587 (727)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999998 9999999999999998764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9e-25 Score=228.41 Aligned_cols=375 Identities=13% Similarity=0.068 Sum_probs=257.4
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCch
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD---KDRVVWNIMISAYYQSGFPK 316 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 316 (727)
...+.+.|++++|.+.+..+++.. +.+...+..+...+...|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777777776654 33445555666666677777777776665432 24556677777777777777
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 004856 317 ESLELLMCMVRSGFRAD-LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395 (727)
Q Consensus 317 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (727)
+|++.|+++... .|+ ..++..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~------------------- 142 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG------------------- 142 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH-------------------
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH-------------------
Confidence 777777776653 233 3345555555555555555555555555442 11223334444
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 396 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
..+...|++++|++.|+++.... +.+..++..+...+...|++++|...++.+.+.. +.+...+..
T Consensus 143 ------------~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 143 ------------NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp ------------HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ------------HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 44444444455555444444431 1123344444445555555555555555554443 233455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL 553 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 553 (727)
+...+...|++++|...|++.....| +..+|..+...|...|++++|++.|+++.+. .| +..+|..+..++.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Confidence 66777777778888777776443344 5788899999999999999999999999984 45 57789999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
+++|...++++.+. .+.+..++..++..+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...+++
T Consensus 287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999875 3556788999999999999999999999988 4555 456888888889999999999999999
Q ss_pred HHccCCCCcchHHHHHHHHHhcCC
Q 004856 632 LISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 632 ~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+++++|+++.+|..++.++...|+
T Consensus 365 a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 365 AIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999998887764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.7e-24 Score=222.29 Aligned_cols=354 Identities=13% Similarity=0.092 Sum_probs=304.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 004856 306 ISAYYQSGFPKESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECED 384 (727)
Q Consensus 306 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 384 (727)
...+.+.|++++|++.+.++.+. .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667889999999999888765 3544 445556667778899999999988888764 5577889999999999999
Q ss_pred HHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCChHHHHHHHHH
Q 004856 385 LNCARKIFDSVKT--K-TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-VTIINILPACVNIGALEHVKYLHGY 460 (727)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~ 460 (727)
+++|.+.|+++.. | +..+|..+...+.+.|++++|++.|+++... .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999998753 3 5568999999999999999999999999875 4554 4566777788999999999999999
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch
Q 004856 461 SMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DL 538 (727)
Q Consensus 461 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 538 (727)
+.+.. +.+...+..+...|.+.|++++|...|+++....| +...|..+...+...|++++|+..|++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 45678889999999999999999999999654445 5678999999999999999999999999884 56 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF-KPDARVWGPLLSAC 616 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~ 616 (727)
.++..+..++...|++++|...++++.+. .+.+...|..++..|.+.|++++|.+.++++ .. .++..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 88999999999999999999999999864 2334678999999999999999999999998 33 34677899999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.7e-27 Score=248.93 Aligned_cols=213 Identities=11% Similarity=0.023 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 004856 317 ESLELLMCMVRSGFRADL-FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSV 395 (727)
Q Consensus 317 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (727)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566667666665443 457778888888888888888888888888888888888888888776643211
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 396 KTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 396 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23445678888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 476 IFISYAKCGCIEMAGELFDEEKID--SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
+|.+|++.|++++|.++|++|... .||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999987543 7999999999999999999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-22 Score=217.57 Aligned_cols=439 Identities=10% Similarity=-0.053 Sum_probs=290.9
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhh
Q 004856 200 RWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYS 279 (727)
Q Consensus 200 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 279 (727)
.|......+.+.|++++|+..|+++.+.. |+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35566777888899999999999998865 788888888888888888888888888888875 345566777777777
Q ss_pred cCCChHHHHHHHhcCCCC---CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 004856 280 KLASLEDAKMLFDKMSDK---DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (727)
+.|++++|...|+++... +......++..+........+.+.+..+...+..|+...+..-....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 152 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK------------ 152 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH------------
Confidence 777777777777765332 22333333433333332333333332222222222222111100000
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh---cCChHHHHHHHHHHHH----
Q 004856 357 HANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT---HDQSLEALRLFSEMKL---- 428 (727)
Q Consensus 357 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~---- 428 (727)
......|+...... +.......... ..+..+ +...+......+.. .|++++|+..|+++..
T Consensus 153 ----~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 153 ----DKQENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ----hhccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00001111111110 11000000000 001111 23344444444444 7888888888888776
Q ss_pred -CCCC--------CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 429 -EGVE--------VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 429 -~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
.... .+..++..+...+...|++++|..++..+.+.... ...+..+...|...|++++|...+++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 3111 12345666777788888888888888888776644 777788888888889998888888885544
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH
Q 004856 500 SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA 578 (727)
Q Consensus 500 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 578 (727)
.| +...|..+...|...|++++|+..+++..+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+.
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 376 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPN 376 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHH
Confidence 44 66788888889999999999999999988853 235678888888899999999999999988865 233567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-C---CCCC----HhhHHHHHHHHHH---cCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 579 SMVNLLGRAGHMDEARELVKDM-P---FKPD----ARVWGPLLSACKM---HSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.+...|.+.|++++|.+.++++ . ..|+ ...|..+...+.. .|++++|...++++++..|+++.++..++
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 8889999999999999998877 2 2222 2377788888888 89999999999999999998888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 004856 648 NIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 648 ~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+|...|++++|.+.+++..+.
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999888766
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-20 Score=206.77 Aligned_cols=422 Identities=9% Similarity=0.008 Sum_probs=246.1
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHh
Q 004856 199 SRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMY 278 (727)
Q Consensus 199 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 278 (727)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.+ +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 347777888999999999999999998764 3466788888888899999999999999998876 44677778888888
Q ss_pred hcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcC------CCCChhhHHHHHHHhhcCCChHH
Q 004856 279 SKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSG------FRADLFTAIAAVSSISTMKNIEW 352 (727)
Q Consensus 279 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~ 352 (727)
.+.|++++|...|+.+ ..+....+..+..+...+...+|...++++.... ..|+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~---------------- 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS---------------- 166 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----------------
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----------------
Confidence 8888888888888644 2233333334445555666677777777774421 1222222
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHh--------cCChHHHHH
Q 004856 353 GKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVV---SWSSMIKGYVT--------HDQSLEALR 421 (727)
Q Consensus 353 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~ 421 (727)
+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.
T Consensus 167 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 167 -----------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp -----------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22233334444444444433333221 22222222111 134555555
Q ss_pred HHHHHHHCCCCCC--------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 422 LFSEMKLEGVEVD--------FVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELF 493 (727)
Q Consensus 422 ~~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 493 (727)
+|+++.+. .|+ ..++..+...+...|++++|...+..+.+... +...+..+...|...|++++|...|
T Consensus 224 ~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHH
Confidence 55555543 222 11233344445555566666666655555432 2445555555666666666666666
Q ss_pred HhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC
Q 004856 494 DEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP 572 (727)
Q Consensus 494 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 572 (727)
++.....| +...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++.+.+. .+.
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 376 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT 376 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 65332222 45566666666666677777777766666632 223556666666666667777777776666654 223
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CC----CHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PF---KP----DARVWGPLLSACKMH----------SETELAELTAEKLIS 634 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~ 634 (727)
+...+..+...+.+.|++++|.+.++++ .. .+ ....+..+...+... |++++|+..++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 3456666666666677777776666665 11 11 111122233345555 677777777777777
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 635 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+|++..++..++.+|...|++++|.+.+++..+.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766777777777777777777777777666554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=2.5e-20 Score=198.90 Aligned_cols=337 Identities=11% Similarity=0.042 Sum_probs=228.3
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+...|..+...+.+.|++++|+.+|+++.... +.+...+..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665531 2244455555555555566666666555555543 223445556666
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC---h---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 378 MYCECEDLNCARKIFDSVKTKT---V---VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
.|.+.|++++|.+.|+++.+.+ . ..|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 6666666666666666554322 2 3444443321110 011112234445555
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMK 530 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 530 (727)
++|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++... +.+...|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555443 345566677777788888888888888775432 3467889999999999999999999999998
Q ss_pred HCCCCCC-hHHHHHH------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHH
Q 004856 531 QSDVRPD-LITFLGL------------LTACVNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 531 ~~g~~p~-~~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 592 (727)
+ ..|+ ...+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..++..++..+.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 4564 3444444 78899999999999999999865 344 4578899999999999999
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH------------HHhcC----
Q 004856 593 ARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI------------YAAAG---- 654 (727)
Q Consensus 593 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 654 (727)
|.+.++++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999987 4445 577899999999999999999999999999999999999988844 55555
Q ss_pred -ChhHHHHHHHH
Q 004856 655 -KWNGVAKMRTF 665 (727)
Q Consensus 655 -~~~~a~~~~~~ 665 (727)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 45566666665
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-20 Score=204.19 Aligned_cols=449 Identities=10% Similarity=-0.002 Sum_probs=255.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhh
Q 004856 98 LYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYI 177 (727)
Q Consensus 98 ~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 177 (727)
.|......+.+.|++++|+..|+++.... |+..++..+..++...|+++.|...++.+++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------- 70 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--------------- 70 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---------------
Confidence 45566677777888888888888877754 6777777777777777888887777777776541
Q ss_pred ccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHH
Q 004856 178 KCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHC 257 (727)
Q Consensus 178 ~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 257 (727)
.+...|..+...|.+.|++++|+..|+++...+ +++......++..+........+.+.+.
T Consensus 71 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 71 ------------------DYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred ------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 122335556666777788888888888887765 2344444444443333222222222222
Q ss_pred HHHHhcCCCChhHHhHH---HHHhhcCCChHHHHHHHhcCCC---------C-CeehHHHHHHHHHh---cCCchHHHHH
Q 004856 258 VAVVSDFCKDLSVNTAL---LSMYSKLASLEDAKMLFDKMSD---------K-DRVVWNIMISAYYQ---SGFPKESLEL 321 (727)
Q Consensus 258 ~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~ 321 (727)
.+...+..++....+.- ............+...+..... + +...+......+.. .|++++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 22111111111000000 0000000111111111111110 1 12223333333332 5556666666
Q ss_pred HHHHHH-----cCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 004856 322 LMCMVR-----SGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVK 396 (727)
Q Consensus 322 ~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (727)
|+++.. ..-.|+.... .+.+..++..+...|...|++++|...|+.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKL---------------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHH---------------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccCcccccc---------------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 665554 2111211100 01123456667777777788888777777654
Q ss_pred C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHH
Q 004856 397 T--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNT 474 (727)
Q Consensus 397 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (727)
+ ++...|..+...|...|++++|+..|+++.... +.+...+..+.
T Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~-------------------------------- 311 (514)
T 2gw1_A 265 ELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG-------------------------------- 311 (514)
T ss_dssp HHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH--------------------------------
T ss_pred hhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH--------------------------------
Confidence 2 236677778888888888888888888877642 11233333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
..|...|++++|...|++.... +.+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|+
T Consensus 312 ---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 312 ---QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp ---HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred ---HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 3444444444444444443221 2245566677777777777777777777777642 2246677777777778888
Q ss_pred HHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHH
Q 004856 554 VEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGR---AGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 624 (727)
+++|...++.+.+...-.++ ...+..+...+.+ .|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 88888888777654222222 3367777788888 88888888888776 3334 45567777777888888888
Q ss_pred HHHHHHHHHccCCCCcchHHHH
Q 004856 625 AELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l 646 (727)
|...++++++++|+++..+..+
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHH
Confidence 9888888888888777666555
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.2e-19 Score=193.53 Aligned_cols=306 Identities=9% Similarity=0.013 Sum_probs=218.8
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGY 410 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (727)
...+..+...+.+.|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3445555555555555555555555555442 23344555555555555555555555554432 2344555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEVDF----VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
.+.|++++|+..|+++... .|+. ..+..+...+.. ..+..+...|.+.|++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 5555555555555555543 2322 222222222110 1122334568899999
Q ss_pred HHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++|...|+++....| +...+..+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998654344 77899999999999999999999999998853 4468899999999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHHcCCHHHHH
Q 004856 566 ESYGYEPS-QEHYASM------------VNLLGRAGHMDEARELVKDM-PFKPD-----ARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 566 ~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~A~ 626 (727)
.. .|+ ...+..+ +..+.+.|++++|.+.++++ ...|+ ...|..+...+.+.|++++|+
T Consensus 239 ~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 239 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred Hh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 64 444 4445444 88999999999999999988 44454 346777888899999999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998775
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.4e-18 Score=189.95 Aligned_cols=410 Identities=9% Similarity=-0.002 Sum_probs=282.9
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHH
Q 004856 197 LKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLS 276 (727)
Q Consensus 197 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 276 (727)
+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|...++ .+... |+ ..+..+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GD--FDGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CC--CChHHHH
Confidence 34456667777777888888888888887754 3355677778888888888888888885 33322 22 1122344
Q ss_pred HhhcCCChHHHHHHHhcCCCC------CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCCh
Q 004856 277 MYSKLASLEDAKMLFDKMSDK------DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI 350 (727)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 350 (727)
.+...+....|...++.+... .....+..+..+....+.+.+...+..... ..+....+...+.......
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-- 207 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSAT-- 207 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhh--
Confidence 445555667788888877542 222334555666666666655544433221 1111111111111110000
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHH
Q 004856 351 EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKT----------VVSWSSMIKGYVTHDQSLEAL 420 (727)
Q Consensus 351 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~ 420 (727)
.-......|++++|..+|+.+.+.+ ..+|..+...+...|++++|+
T Consensus 208 ------------------------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 208 ------------------------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 0001112345666666666655432 124666677888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004856 421 RLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDS 500 (727)
Q Consensus 421 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 500 (727)
..|++.... .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++.....
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999885 4667788888889999999999999999988876 4467788889999999999999999999855434
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hh
Q 004856 501 K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QE 575 (727)
Q Consensus 501 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 575 (727)
| +...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+.+...-.++ ..
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 4 56789999999999999999999999999853 335778999999999999999999999998765211111 22
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 576 HYASMVNLLGRA----------GHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 576 ~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
.+..+...|.+. |++++|...++++ ...| +...|..+...+...|++++|...+++++++.|.+....
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 345556777787 9999999999988 3344 566888888889999999999999999999999776654
Q ss_pred H
Q 004856 644 V 644 (727)
Q Consensus 644 ~ 644 (727)
.
T Consensus 500 ~ 500 (537)
T 3fp2_A 500 Q 500 (537)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.8e-17 Score=170.51 Aligned_cols=306 Identities=9% Similarity=-0.002 Sum_probs=211.8
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGY 410 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 410 (727)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3445556666667777777777777776654 33455666667777777777777777766542 2445666667777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCH
Q 004856 411 VTHDQSLEALRLFSEMKLEGVEV---DFV-TIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCI 486 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 486 (727)
...|++++|+..|++..+. .| +.. .+..+.... ....+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 7777777777777776654 33 221 111111000 001122335667788888
Q ss_pred HHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004856 487 EMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMK 565 (727)
Q Consensus 487 ~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 565 (727)
++|...|++..... .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888754333 366778888888888888888888888888742 3367788888888888888888888888887
Q ss_pred HhcCCCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-----hHHHHHHHHHHcCCHHHHH
Q 004856 566 ESYGYEPS-QEHYA------------SMVNLLGRAGHMDEARELVKDM-PFKPDAR-----VWGPLLSACKMHSETELAE 626 (727)
Q Consensus 566 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~ll~~~~~~g~~~~A~ 626 (727)
+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+.. .+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 233 33322 2366688889999999988887 3334322 2344556688899999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 627 LTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999988899999999999999999999999887765
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6.3e-15 Score=165.35 Aligned_cols=315 Identities=14% Similarity=0.108 Sum_probs=237.1
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCChhhHHHHH---------------------------HHhhcCC
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGF--RADLFTAIAAV---------------------------SSISTMK 348 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll---------------------------~~~~~~~ 348 (727)
|+.--...+.+|...|.+.+|++++++....+- .-+...-+.++ ..+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 444445667777788888888888887763311 00111122222 3344566
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.+++|..+|+... ......+.+ +-..|++++|.++.+++ .+..+|..+..++...|++++|++.|.+.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 6666766666541 111111222 22667777777777766 34678889999999999999999999663
Q ss_pred CCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHH
Q 004856 429 EGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNS 508 (727)
Q Consensus 429 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 508 (727)
-|...|..++.+|.+.|+++++.+++.+.++.. +++.+.+.++.+|++.+++++...+. . .++...|..
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~--~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N--GPNNAHIQQ 1200 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h--CCCHHHHHH
Confidence 467788889999999999999999999888765 44444556889999999999755553 2 567778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
+...|...|++++|...|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhh
Confidence 999999999999999999984 378999999999999999999988663 5578888899999999
Q ss_pred CHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 589 HMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 589 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
++..|....... ..+...+..++..|...|.+++|+.++++.+.++|.+...|..|+.+|.+.
T Consensus 1265 Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 999999888754 344556668888899999999999999999999998888888887777765
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=5.9e-17 Score=166.70 Aligned_cols=324 Identities=9% Similarity=0.006 Sum_probs=245.4
Q ss_pred eehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 004856 299 RVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDM 378 (727)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 378 (727)
+..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+++.. +.+..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4567888899999999999999999998763 3356788888899999999999999999999875 4466789999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChH
Q 004856 379 YCECEDLNCARKIFDSVKTKTV------VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALE 452 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 452 (727)
|...|++++|...|+...+.++ ..+..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998865433 33333321100 011222333445555555
Q ss_pred HHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 004856 453 HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
+|...+..+.+.. +.+...+..+...|...|++++|...+++.....| +...|..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555543 33455666777778888888888888887554444 677888888899999999999999999887
Q ss_pred CCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCCHHHH
Q 004856 532 SDVRPD-LITFL------------GLLTACVNAGLVEEGRIIFKEMKESYGYEPS-Q----EHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 532 ~g~~p~-~~t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A 593 (727)
. .|+ ...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...+.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 4 454 33332 2366688999999999999999875 233 2 2355688899999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 594 RELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 594 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
.+.+++. ...| +...|..+...+...|++++|...++++++++|++..++..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999988 3345 6678888888899999999999999999999999998888887776543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=6.6e-14 Score=157.23 Aligned_cols=402 Identities=10% Similarity=0.030 Sum_probs=248.4
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHhcCC-CCC-----cchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHH
Q 004856 65 LILSSNLIDSYANLGLLSLSQQVFNSIT-SPN-----SLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVI 138 (727)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 138 (727)
+.--+..++.|...|.+.+|.++++++. +|+ ....|.++....+. +..+..+..++.. .+....+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHH
Confidence 3334556677777777777777777654 222 23455566655555 4455555544433 12233455
Q ss_pred HHhhccCChhHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhH
Q 004856 139 RSCSCLLDFISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKS 217 (727)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A 217 (727)
..|...|.+++|.++++... ......+.++. .. |.+++|... ++.. +..+|..+..++.+.|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i--~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HI--GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH--hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 66667777777777777641 22222333432 33 777777777 6553 345577888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCC
Q 004856 218 FELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDK 297 (727)
Q Consensus 218 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 297 (727)
++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++..|++.+++++..... ..+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 8887553 366677778888888888888888887777654 33334445777788887777544443 344
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++.. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5566667777778888888888888774 36777788888888888887777765 34566777777
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH--HHHHhcCCChHHH
Q 004856 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF-VTIINI--LPACVNIGALEHV 454 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--l~a~~~~~~~~~a 454 (727)
++...|++..|...... ...++..+..++..|.+.|.+++|+.+++..... .+.. ..|+-+ +.+-.+.+++.+.
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 77777888887777664 3334555667777888888888888888666543 2322 233223 3333333444444
Q ss_pred HHHHHHHHHhCCC------chHhHHHHHHHHHHhcCCHHHHHHHHHhc-------------cCCCCCHHHHHHHHHHHHH
Q 004856 455 KYLHGYSMKLGLN------SLSSVNTAIFISYAKCGCIEMAGELFDEE-------------KIDSKDIITWNSMISAYAK 515 (727)
Q Consensus 455 ~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~li~~~~~ 515 (727)
.++|.. +..++ .+...|.-++..|.+.|+++.|....-+- .....|+..|...+.-|..
T Consensus 1336 lk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1336 LELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 444332 22222 24566777777888888888777333221 1113455566666666654
Q ss_pred cC
Q 004856 516 HG 517 (727)
Q Consensus 516 ~g 517 (727)
..
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 43
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=7.1e-17 Score=164.04 Aligned_cols=289 Identities=12% Similarity=0.036 Sum_probs=218.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 366 DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 366 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
+.+..++..+...+...|++++|.++|+++.+. +...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 445556666777777777888887777776432 44556667777777888888888888877642 22455666677
Q ss_pred HHHhcCC-ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChH
Q 004856 443 PACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWS 520 (727)
Q Consensus 443 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 520 (727)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|++.....| +...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888887777654 34566777888888888999999888888543334 4567777888899999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHH
Q 004856 521 QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYG-------YEPSQEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 593 (727)
+|++.+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988743 33577888889999999999999999998876421 133356888899999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH-HhcCChh
Q 004856 594 RELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY-AAAGKWN 657 (727)
Q Consensus 594 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 657 (727)
.+.++++ ...| +...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999887 3334 4567888888899999999999999999999999999999999888 4555543
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.6e-17 Score=166.01 Aligned_cols=281 Identities=12% Similarity=0.045 Sum_probs=117.4
Q ss_pred ccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHH
Q 004856 77 NLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQ 156 (727)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 156 (727)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.+|...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999998775 8999999999999999999999763 6888999999999999999999998887
Q ss_pred HHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhh
Q 004856 157 VVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGT 235 (727)
Q Consensus 157 ~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 235 (727)
..+. .+++.+.+.|+.+|.++ |+++++.++ +. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Kl--g~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKT--NRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHh--CCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 7774 45688899999999999 999999988 53 67779999999999999999999999977 47
Q ss_pred HHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCc
Q 004856 236 LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFP 315 (727)
Q Consensus 236 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 315 (727)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888999999999999999888877 378888999999999999999987777655 4444455688888889999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHhhc--CCChHHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCCHHH
Q 004856 316 KESLELLMCMVRSGFRADLFTAIAAVSSIST--MKNIEWGKQMHANVLRNGSDY------QVSVHNSLIDMYCECEDLNC 387 (727)
Q Consensus 316 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~ 387 (727)
++|+.+++...... +.-...|+-+--.+++ .+++.+..+.|.. +..++| +..+|..++-.|.+.++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99988888876432 2223334433333332 3333344333321 112222 34456666666666666666
Q ss_pred HHHH
Q 004856 388 ARKI 391 (727)
Q Consensus 388 A~~~ 391 (727)
|...
T Consensus 301 A~~t 304 (449)
T 1b89_A 301 AIIT 304 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.5e-17 Score=166.15 Aligned_cols=282 Identities=9% Similarity=0.026 Sum_probs=113.7
Q ss_pred CChhhhhhh-ccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHH
Q 004856 182 GFENEKGMI-QRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAV 260 (727)
Q Consensus 182 g~~~~a~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 260 (727)
|++++|... ++.+.|+ .|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++....
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 889999999 8886664 899999999999999999999975 3688899999999999999999999888887
Q ss_pred HhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 004856 261 VSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAA 340 (727)
Q Consensus 261 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 340 (727)
+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 74 45678899999999999999999988864 67789999999999999999999999976 478888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 004856 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEAL 420 (727)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 420 (727)
..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888776 367778888888888888888877766654 44444456778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCc------hHhHHHHHHHHHHhcCCHHHHHHH
Q 004856 421 RLFSEMKLEGVEVDFVTIINILPACVN--IGALEHVKYLHGYSMKLGLNS------LSSVNTAIFISYAKCGCIEMAGEL 492 (727)
Q Consensus 421 ~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 492 (727)
.+++...... +--...|+-+.-++++ .+++.+..+.|. .+..+++ +...|..++..|.+.++++.|...
T Consensus 228 ~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 8888776443 2223333333333332 233333333322 1122222 234455555666666666655554
Q ss_pred HHh
Q 004856 493 FDE 495 (727)
Q Consensus 493 ~~~ 495 (727)
.-+
T Consensus 305 m~~ 307 (449)
T 1b89_A 305 MMN 307 (449)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=2e-15 Score=162.38 Aligned_cols=366 Identities=11% Similarity=0.011 Sum_probs=268.5
Q ss_pred ChhHHhHHHHHhhc----CCChHHHHHHHhcCCC-CCeehHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhH
Q 004856 267 DLSVNTALLSMYSK----LASLEDAKMLFDKMSD-KDRVVWNIMISAYYQ----SGFPKESLELLMCMVRSGFRADLFTA 337 (727)
Q Consensus 267 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 337 (727)
++..+..|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44445555555554 5666667666665533 355566666666666 677777777777776654 34444
Q ss_pred HHHHHHhhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHH
Q 004856 338 IAAVSSIST----MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCE----CEDLNCARKIFDSVKT-KTVVSWSSMIK 408 (727)
Q Consensus 338 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 408 (727)
..+-..+.. .++.++|...++...+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555554 667777777777777665 45556677777776 6788888888876554 36677777888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 004856 409 GYVT----HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480 (727)
Q Consensus 409 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (727)
.|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..++....+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8877 788889999998888764 44556666666654 778889998888888765 344556666677
Q ss_pred Hh----cCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 481 AK----CGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH-----GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 481 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
.. .++.++|...|++... ..+...+..+...|... +++++|+..|++..+.| +...+..+...|...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAE-QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 77 8999999999998653 34667777888888887 89999999999999865 456777788888776
Q ss_pred C---CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cC
Q 004856 552 G---LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWGPLLSACKM----HS 620 (727)
Q Consensus 552 g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 620 (727)
| +.++|.++|++..+. .+...+..|...|.. .+++++|.+++++.-...+...+..|...+.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 789999999998865 357788889999988 89999999999988323456778888888877 89
Q ss_pred CHHHHHHHHHHHHccCCC---CcchHHHHHHHHHh
Q 004856 621 ETELAELTAEKLISMEPE---NAGNYVLLSNIYAA 652 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 652 (727)
+.++|...++++.+.+|+ ++.+...++.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999998853 66666667666554
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=3.9e-15 Score=161.84 Aligned_cols=412 Identities=9% Similarity=0.033 Sum_probs=247.6
Q ss_pred ChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC--CCeehHHHHHHHH
Q 004856 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAY 309 (727)
Q Consensus 232 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 309 (727)
|...|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 45566666666666666542 33455566666666666666666666666543 3444444444322
Q ss_pred -HhcCCchHHHH----HHHHHHHc-CCCCC-hhhHHHHHHHhhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 004856 310 -YQSGFPKESLE----LLMCMVRS-GFRAD-LFTAIAAVSSIST---------MKNIEWGKQMHANVLRNGSDYQVSVHN 373 (727)
Q Consensus 310 -~~~g~~~~A~~----~~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 373 (727)
...|+.++|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 23455555443 44443322 33332 2223333332221 344444555554444410000011121
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH------HCC---CCCCH--------H
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMK------LEG---VEVDF--------V 436 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~ 436 (727)
.........|. ..+..++. .+.+++++|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00000000 12345666766666532 111 23331 2
Q ss_pred HHHHHHHHHhc----CCCh----HHHHHHHHHHHHhCCCchHhHHHHHHHHHHh-------cCCHH-------HHHHHHH
Q 004856 437 TIINILPACVN----IGAL----EHVKYLHGYSMKLGLNSLSSVNTAIFISYAK-------CGCIE-------MAGELFD 494 (727)
Q Consensus 437 t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 494 (727)
.|...+..... .++. +.+..+++.+.... +.+...|..+...+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333332221 1222 35667777777753 4566777777777775 68887 8999999
Q ss_pred hccC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 004856 495 EEKI-DSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL--ITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570 (727)
Q Consensus 495 ~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 570 (727)
+... ..| +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 8654 345 578999999999999999999999999998 46653 47888888888999999999999999853
Q ss_pred CCC-hhHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc----h
Q 004856 571 EPS-QEHYASMVNL-LGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG----N 642 (727)
Q Consensus 571 ~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~ 642 (727)
.|+ ...|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..++++++...|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 343 3344333322 33689999999999977 3344 5678988888889999999999999999998776654 6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...+......|+.+.+..+.+++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777788888899999999999888765
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.9e-16 Score=159.46 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=228.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHH
Q 004856 398 KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIF 477 (727)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (727)
.++..+..++..+...|++++|+++|+++.... +.+...+..++..+...|++++|..++..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356677788889999999999999999998763 2334455667778889999999999999999865 45677888899
Q ss_pred HHHHhcC-CHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 004856 478 ISYAKCG-CIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 478 ~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 555 (727)
..+...| ++++|...|++.....| +...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999665445 57889999999999999999999999999853 335677888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHhhHHHHHHHHHHcCCHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF----------KPDARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 624 (727)
+|...++.+.+. .+.+...+..+...+.+.|++++|...++++ .. ......|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 3445778999999999999999999999877 11 2235688888888999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 625 AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|+..++++++..|++..++..++.+|...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999866543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.1e-16 Score=165.36 Aligned_cols=281 Identities=10% Similarity=-0.023 Sum_probs=219.5
Q ss_pred HHhcCCHHHHHH-HHhcCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 379 YCECEDLNCARK-IFDSVKTK-------TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 379 ~~~~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
+...|++++|.+ .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 77754421 34567788888889999999999999988763 3356677788888889999
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-HHHHHH---------------HHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-IITWNS---------------MISAYA 514 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~---------------li~~~~ 514 (727)
+++|...+..+.+.. +.+..++..+...|...|++++|...|+++....|+ ...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999998888876 456778888888999999999999999885443343 222221 233344
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPD---LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMD 591 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 591 (727)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999985 454 788999999999999999999999999865 2345778999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----------cchHHHHHHHHHhcCChhH
Q 004856 592 EARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN-----------AGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 592 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 658 (727)
+|.+.++++ ...| +...|..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 4445 56688888888999999999999999999988877 7889999999999999999
Q ss_pred HHHHHHH
Q 004856 659 VAKMRTF 665 (727)
Q Consensus 659 a~~~~~~ 665 (727)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998764
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=6.3e-15 Score=160.24 Aligned_cols=410 Identities=9% Similarity=0.029 Sum_probs=289.9
Q ss_pred CCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHH
Q 004856 195 KDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTAL 274 (727)
Q Consensus 195 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 274 (727)
..|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+|+.+++.. |++..|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778999998 58899999999999999875 23455678899999999999999999999999875 577777777
Q ss_pred HHH-hhcCCChHHHHH----HHhcCC------CCCeehHHHHHHHHHh---------cCCchHHHHHHHHHHHcCCCCCh
Q 004856 275 LSM-YSKLASLEDAKM----LFDKMS------DKDRVVWNIMISAYYQ---------SGFPKESLELLMCMVRSGFRADL 334 (727)
Q Consensus 275 i~~-~~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 334 (727)
+.. ....|+.+.|.+ +|+... ..+...|...+....+ .|++++|..+|++.... |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 653 345677777665 666542 1356678888876655 68899999999999872 432
Q ss_pred ---hhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc-------CC------CC
Q 004856 335 ---FTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS-------VK------TK 398 (727)
Q Consensus 335 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 398 (727)
..|..........+. . +...++. .+.+++..|..++.. +. .+
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222222111100010 0 1111111 122344445444432 11 11
Q ss_pred C--------hhHHHHHHHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------CCChH---
Q 004856 399 T--------VVSWSSMIKGYVTH----DQS----LEALRLFSEMKLEGVEVDFVTIINILPACVN-------IGALE--- 452 (727)
Q Consensus 399 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~--- 452 (727)
+ ...|...+...... ++. ++++.+|++..... +-+...|......+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 24566555433322 232 47788898888752 2345566666666654 78877
Q ss_pred ----HHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC-H-HHHHHHHHHHHHcCChHHHHHHH
Q 004856 453 ----HVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD-I-ITWNSMISAYAKHGDWSQCFKLY 526 (727)
Q Consensus 453 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~ 526 (727)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|++.....|+ . ..|..++..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999998886334556888999999999999999999999996655564 3 58999999999999999999999
Q ss_pred HHHHHCCCCCC-hHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 004856 527 TQMKQSDVRPD-LITFLGLLTA-CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM---- 600 (727)
Q Consensus 527 ~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 600 (727)
++..+. .|+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999974 443 3444333322 346899999999999998762 335788999999999999999999999988
Q ss_pred CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 601 PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 601 ~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22332 348888888889999999999999999998884
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=3.1e-14 Score=153.14 Aligned_cols=354 Identities=12% Similarity=-0.002 Sum_probs=295.5
Q ss_pred CCCeehHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCC
Q 004856 296 DKDRVVWNIMISAYYQ----SGFPKESLELLMCMVRSGFRADLFTAIAAVSSIST----MKNIEWGKQMHANVLRNGSDY 367 (727)
Q Consensus 296 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 367 (727)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998864 45566667777776 899999999999999876
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 004856 368 QVSVHNSLIDMYCE----CEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT----HDQSLEALRLFSEMKLEGVEVDFVTI 438 (727)
Q Consensus 368 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 438 (727)
+...+..|..+|.. .+++++|.+.|++..+. ++.++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55667788888988 88999999999987654 66788888888887 889999999999999875 56677
Q ss_pred HHHHHHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCHHHHHHHH
Q 004856 439 INILPACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK----CGCIEMAGELFDEEKIDSKDIITWNSMI 510 (727)
Q Consensus 439 ~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li 510 (727)
..+...+.. .++.++|..++....+.+ +...+..+..+|.. .+++++|...|++... ..+...+..+.
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 777777776 899999999999998876 45567777778876 8999999999998654 45677777888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 511 SAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA-----GLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 511 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
..|.. .++.++|++.|++..+.| +...+..+...|... +++++|...+++..+. + +...+..|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 335 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLG 335 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHH
Confidence 88887 899999999999998764 556777888888887 8999999999999875 3 456778888
Q ss_pred HHHHhcC---CHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh--
Q 004856 582 NLLGRAG---HMDEARELVKDMPFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIYAA-- 652 (727)
Q Consensus 582 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 652 (727)
..|.+.| +.++|.+++++.-...+...+..+...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 789999999988323567788888888888 899999999999998864 57899999999999
Q ss_pred --cCChhHHHHHHHHHHhCCC
Q 004856 653 --AGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 653 --~g~~~~a~~~~~~m~~~~~ 671 (727)
.++.++|...+++..+.+.
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988763
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.5e-16 Score=164.43 Aligned_cols=261 Identities=10% Similarity=-0.053 Sum_probs=206.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (727)
+...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888888888888888888888753 3356677888888888888888888888888765 445777888888
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKD-----------IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP---DLITFLGL 544 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 544 (727)
.|.+.|++++|...|++.....|+ ...+..+...+...|++++|++.|+++.+.. | +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHH
Confidence 899999999999988875432332 2233445788899999999999999999853 4 57889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSET 622 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 622 (727)
...+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999875 3445779999999999999999999999988 4455 467888888899999999
Q ss_pred HHHHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 623 ELAELTAEKLISMEPE------------NAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
++|...+++++++.|+ +...+..++.++...|+.+.+....++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998775 367788999999999999998887654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=4e-15 Score=147.39 Aligned_cols=268 Identities=8% Similarity=-0.002 Sum_probs=207.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHH
Q 004856 379 YCECEDLNCARKIFDSVKTKTV----VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHV 454 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 454 (727)
....|+++.|...++.....++ ...-.+..+|...|++++|+..++.. -.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4557888888888887765543 23455678888899998888766542 345667777888888888888999
Q ss_pred HHHHHHHHHhCC-CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004856 455 KYLHGYSMKLGL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533 (727)
Q Consensus 455 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 533 (727)
.+.++.+...+. +.+...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 888888887764 34566677777889999999999999987 457788999999999999999999999999985
Q ss_pred CCCChHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhh
Q 004856 534 VRPDLITF---LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARV 608 (727)
Q Consensus 534 ~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 608 (727)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4764321 12233344558999999999999976 4557888999999999999999999999987 4455 5668
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 609 WGPLLSACKMHSETEL-AELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
|..++..+...|+.++ +..+++++++++|+++.+. +...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 8888888888998865 6789999999999887654 345566666665543
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=9.6e-16 Score=158.38 Aligned_cols=241 Identities=10% Similarity=0.030 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPAC 445 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 445 (727)
..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|+..|+++.... |+.......+
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~--- 172 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA--- 172 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH---
Confidence 3345555555555566666655555443 2245566666677777777777777777766643 2211110000
Q ss_pred hcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChHHH
Q 004856 446 VNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK---DIITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 522 (727)
+..... ..+ ...+..+...+ ..|++++|...|+++....| +...|..+...|...|++++|
T Consensus 173 ---~~~~~~-----------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 173 ---EEGAGG-----------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp ----------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHhhh-----------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 000000 000 00001111122 55555555555555332223 355566666666666666666
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004856 523 FKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-P 601 (727)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 601 (727)
+..|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ .
T Consensus 237 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 237 VDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666531 223555666666666666666666666666543 1223455666666666666666666666655 1
Q ss_pred CCC------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 602 FKP------------DARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 602 ~~p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
..| ...+|..+..++...|+.++|..++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 111 13566666666666676666666665443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=4.3e-15 Score=147.14 Aligned_cols=248 Identities=11% Similarity=0.024 Sum_probs=202.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDF--VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG 484 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 484 (727)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999999876543 4543 3446677899999999999875543 24667888899999999999
Q ss_pred CHHHHHHHHHhccCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKID--SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
+.++|.+.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999986422 35 566777788999999999999999987 457888999999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 562 KEMKESYGYEPSQEH---YASMVNLLGRAGHMDEARELVKDM-P-FKPDARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+.+.+. .|+... ...++..+...|++++|..+|+++ . ...+...|+.+..++.+.|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999976 355321 223445555679999999999998 2 33467789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 004856 637 PENAGNYVLLSNIYAAAGKWNG-VAKMRTFLRDR 669 (727)
Q Consensus 637 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 669 (727)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 57888887765
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.1e-14 Score=155.93 Aligned_cols=332 Identities=10% Similarity=-0.041 Sum_probs=189.7
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHhC------CCC-ChhHHHHHHHHHHhc--CCHHHHHHHHhcCCC--C-ChhH
Q 004856 335 FTAIAAVSSISTMKNIEWGKQMHANVLRNG------SDY-QVSVHNSLIDMYCEC--EDLNCARKIFDSVKT--K-TVVS 402 (727)
Q Consensus 335 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~ 402 (727)
.+|..+..++...|++++|...++.+.+.. ..+ ...++..+..++.+. +++++|.+.|++..+ | ++..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 344445555555555555555554443320 011 123344443344433 356777777766542 2 3444
Q ss_pred HHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCchHhHHHH
Q 004856 403 WSSMIKG---YVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACV----NIGALEHVKYLHGYSMKLGLNSLSSVNTA 475 (727)
Q Consensus 403 ~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (727)
+..+... +...++.++|++.|++..+.. +.+...+..+...+. ..++.++|.++++...+.. +.+..++..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 4444433 334566777777777776642 122334433333333 3356667777777776655 445566777
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCC
Q 004856 476 IFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAK-------------------HGDWSQCFKLYTQMKQSDVR 535 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~ 535 (727)
+...|.+.|++++|...|++.....| +...|..+...|.. .+..++|...+++..+.. +
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 77788888888888888877543344 45556655555432 234677888888887743 2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHhhHHH
Q 004856 536 PDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ--EHYASMVNL-LGRAGHMDEARELVKDM-PFKPDARVWGP 611 (727)
Q Consensus 536 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 611 (727)
.+..++..+...+...|++++|+..|++..+. ...|.. ..+..+... +...|+.++|+..+++. .+.|+...+..
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 34667888999999999999999999998864 222221 123333332 34778999999999887 56676543332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeE
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSW 679 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 679 (727)
. .+.+..++++.++.+|+++.+|..|+.+|...|++++|++.+++..+.+-......+|
T Consensus 411 ~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 M---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp H---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred H---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2 3455677888889999999999999999999999999999999988876544334444
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.8e-15 Score=153.35 Aligned_cols=259 Identities=10% Similarity=-0.033 Sum_probs=182.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 004856 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (727)
|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555432 1233444445555555555555555555555543 3344555556666666
Q ss_pred cCCHHHHHHHHHhccCCCCC-HHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKD-IITWNSM--------------IS-AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
.|++++|...+++.....|+ ...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 66666666666654322232 1222222 22 3677889999999999998853 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 624 (727)
.+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999865 2345778999999999999999999999987 3344 56788888888999999999
Q ss_pred HHHHHHHHHccCCC------------CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 625 AELTAEKLISMEPE------------NAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 625 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|...++++++..|+ +..++..++.++...|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 6788999999999999999999988643
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=178.94 Aligned_cols=151 Identities=9% Similarity=0.009 Sum_probs=131.6
Q ss_pred cCCCchhhHHHHHHHHHccCChhHHHHHHhcCC-------CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcc
Q 004856 60 GLHQNLILSSNLIDSYANLGLLSLSQQVFNSIT-------SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAED 132 (727)
Q Consensus 60 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 132 (727)
....-.++||+||++||++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|...|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344456789999999999999999999997753 6999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhccCCh-hHHHHHHHHHHHHcCCCchhHHHHHHHhhhccCCCChhhhhhh-ccCCC-----CCcccHHHHH
Q 004856 133 TYPFVIRSCSCLLDF-ISGEKIHAQVVKLGFDSFDDVGDALVEFYIKCDGGFENEKGMI-QRKFK-----DLKSRWNSLI 205 (727)
Q Consensus 133 t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~-----~~~~~~~~li 205 (727)
||+++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+. +-++..+++ ..... +.+.+.+.|.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~--~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA--TVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH--HHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH--HHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 999999999999985 78999999999999999999999999999888 888888887 44322 2244556677
Q ss_pred HHHHhCC
Q 004856 206 SLAVQNG 212 (727)
Q Consensus 206 ~~~~~~g 212 (727)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777766
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=9e-17 Score=174.70 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=131.2
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 465 GLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK-----IDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 465 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
.......+|++||++|+++|++++|.++|++|. +..||+++||+||.+|++.|++++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 345567789999999999999999999998754 237999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HhhHHHH
Q 004856 540 TFLGLLTACVNAGL-VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD------ARVWGPL 612 (727)
Q Consensus 540 t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l 612 (727)
||+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+ +|+ ..+...|
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHH
Confidence 99999999999997 57899999999998 99999999999998777755444444443333 332 3344444
Q ss_pred HHHHHHcC---------CHHHHHHHHHHHH
Q 004856 613 LSACKMHS---------ETELAELTAEKLI 633 (727)
Q Consensus 613 l~~~~~~g---------~~~~A~~~~~~~~ 633 (727)
...|.+.+ ..++-...+++-+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 45565544 2455555555554
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=3.9e-15 Score=153.64 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHH
Q 004856 434 DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISA 512 (727)
Q Consensus 434 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 512 (727)
+...+..+...+.+.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|++.....| +...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788888999999999999999999876 55688899999999999999999999998654344 68899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDL-----------ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 4532 2233457889999999999999999997622222578999999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 659 (727)
..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 3344 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 004856 660 AKMRTFLRDR 669 (727)
Q Consensus 660 ~~~~~~m~~~ 669 (727)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1e-13 Score=140.31 Aligned_cols=277 Identities=9% Similarity=-0.066 Sum_probs=127.2
Q ss_pred CeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 004856 298 DRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLID 377 (727)
Q Consensus 298 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 377 (727)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 34456666667777777777777777766542 1123333333344444444444444444433331
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCChHHHHH
Q 004856 378 MYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVT-IINILPACVNIGALEHVKY 456 (727)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~ 456 (727)
..+..+|..+...|...|++++|+..|+++.... |+... +..+...+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 133 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------- 133 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH-----------
Confidence 1234455556666666666666666666665532 22111 11110000
Q ss_pred HHHHHHHhCCCchHhHHHHH-HH-HHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 004856 457 LHGYSMKLGLNSLSSVNTAI-FI-SYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSD 533 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 533 (727)
++......+ .. .+...|++++|...+++..... .+...|..+...|...|++++|++.++++.+..
T Consensus 134 -----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 202 (327)
T 3cv0_A 134 -----------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202 (327)
T ss_dssp -----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 000000001 01 1333444444444444422112 234455555555555555555555555555431
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------
Q 004856 534 VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD------- 605 (727)
Q Consensus 534 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~------- 605 (727)
+.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+
T Consensus 203 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 203 -PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 123444555555555555555555555555443 1223445555555555555555555555544 11122
Q ss_pred ------HhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 606 ------ARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 606 ------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
...|..+...+...|+.++|...++++++
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33455555555555666666555554443
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=4.8e-14 Score=133.24 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=158.2
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHH
Q 004856 467 NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGL 544 (727)
Q Consensus 467 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 544 (727)
+++...+..+...+.+.|++++|...|++.....| +...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566777788889999999999999998655455 6788999999999999999999999999984 56 57788999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHH
Q 004856 545 LTACVNA-----------GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGP 611 (727)
Q Consensus 545 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 611 (727)
..++... |++++|+..+++..+. .|+ ...+..+..+|...|++++|++.++++ ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 9999999 9999999999999865 454 678899999999999999999999987 22267788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-13 Score=134.60 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 004856 401 VSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISY 480 (727)
Q Consensus 401 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 480 (727)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE------------- 70 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-------------
Confidence 455666666677777777777777666654 44555555555555555555555555444432100
Q ss_pred HhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 004856 481 AKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 556 (727)
..++ ...|..+...|...|++++|++.|++..+ +.|+. ..+...|++++
T Consensus 71 ------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 71 ------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEK 123 (258)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHH
T ss_pred ------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHH
Confidence 0111 45677777778888888888888888777 34553 33556677888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
|...++.+... .+.+...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++|+..++++++
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888887753 2223557777888888888888888888877 3333 456777777778888889999999998888
Q ss_pred cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 635 MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 635 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888999999999998888887654
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-13 Score=147.45 Aligned_cols=383 Identities=9% Similarity=-0.050 Sum_probs=227.6
Q ss_pred ChhhHHHHHHHhcccCChhHHHHHHHHHHHh-----c---CCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC-------
Q 004856 232 DSGTLINLLRSTVELKSLELGRIVHCVAVVS-----D---FCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD------- 296 (727)
Q Consensus 232 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 296 (727)
....|+.+...+...|+.++|.+.+...++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888889999999999999988763 1 122356788889999999999999888876532
Q ss_pred C----CeehHHHHHHHHHhc--CCchHHHHHHHHHHHcCCCCChh-hHHHHHH---HhhcCCChHHHHHHHHHHHHhCCC
Q 004856 297 K----DRVVWNIMISAYYQS--GFPKESLELLMCMVRSGFRADLF-TAIAAVS---SISTMKNIEWGKQMHANVLRNGSD 366 (727)
Q Consensus 297 ~----~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~ 366 (727)
+ ...+++.+..++... +++++|++.|++..+. .|+.. .+..+.. .+...++.++|.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 234565555555554 4688999999998775 45433 3333322 2445677788888888888764 3
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 004856 367 YQVSVHNSLIDMYCE----CEDLNCARKIFDSVK---TKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTI 438 (727)
Q Consensus 367 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 438 (727)
.+..++..+...+.. .|++++|.+.+++.. ..+...+..+...|...|++++|+..|++..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 344555555544444 456778888887654 335667888888899999999999999888775 344 3344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcC
Q 004856 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHG 517 (727)
Q Consensus 439 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g 517 (727)
..+...+...+.... .. ............+..+.|...|++.....| +...|..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444433321110000 00 000011111222345677777776443233 5567888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDL--ITFLGLLT-ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEAR 594 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 594 (727)
++++|++.|++..+....|.. ..+..+.. .....|+.++|+..|++..+ +.|+........ ..+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHH
Confidence 999999999999985433221 12333332 23567999999999999885 456643332222 2333
Q ss_pred HHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 595 ELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 595 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+++++. ...| +..+|..+...+...|++++|+..|+++++++|.+|.+..-++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444433 2234 5678888988999999999999999999999998887766544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.4e-13 Score=133.99 Aligned_cols=233 Identities=12% Similarity=0.032 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVKT--KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV--EVD----FVTIIN 440 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~ 440 (727)
...+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987532 6778899999999999999999999999876421 112 233444
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChH
Q 004856 441 ILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520 (727)
Q Consensus 441 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 520 (727)
+... |.+.|++++|...|++.....|+. ..+...|+++
T Consensus 85 l~~~-----------------------------------~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~ 122 (258)
T 3uq3_A 85 IGNA-----------------------------------YHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAE 122 (258)
T ss_dssp HHHH-----------------------------------HHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHH
T ss_pred HHHH-----------------------------------HHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHH
Confidence 4444 445555555555555433223332 2344556677
Q ss_pred HHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 521 QCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 521 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
+|+..++++... .| +...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 123 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 123 KELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 777777777663 34 3456666777777777777777777777654 233456677777777777777777777776
Q ss_pred C-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCcchHHHHH
Q 004856 600 M-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME------PENAGNYVLLS 647 (727)
Q Consensus 600 ~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~ 647 (727)
+ ...| +...|..+...+...|++++|...+++++++. |.+...+..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 6 3334 35567777777888888888888888888877 65555555444
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=3.2e-13 Score=132.90 Aligned_cols=242 Identities=10% Similarity=-0.110 Sum_probs=180.9
Q ss_pred cCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHH
Q 004856 413 HDQSLEALRLFSEMKLEGVE--V-DFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA 489 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 489 (727)
.|++++|+..|+++.+.... | +...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777664321 1 24456666667777777777777777777664 34566777888888888888888
Q ss_pred HHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 004856 490 GELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESY 568 (727)
Q Consensus 490 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 568 (727)
...|++.....| +...|..+...|...|++++|+..|+++.+ +.|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888888543334 678899999999999999999999999998 4576555555666667889999999999888765
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 569 GYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-----ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 569 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777788888999999999887 33332 4678888888999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMR 663 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~ 663 (727)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 56778889998887765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.5e-12 Score=137.80 Aligned_cols=374 Identities=10% Similarity=0.004 Sum_probs=196.3
Q ss_pred HHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCCh---HHHHHHHhcCCCCCeehHHHHHHHHHhcC----
Q 004856 241 RSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASL---EDAKMLFDKMSDKDRVVWNIMISAYYQSG---- 313 (727)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 313 (727)
..+.+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566667777777666655 333444555666666777 78888888877667777777777565555
Q ss_pred -CchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----CH
Q 004856 314 -FPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNI---EWGKQMHANVLRNGSDYQVSVHNSLIDMYCECE----DL 385 (727)
Q Consensus 314 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~ 385 (727)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+....+.|. ......|...|...+ +.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 6678888888888765322 444444444443332 334444444444443 445666667777766 45
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004856 386 NCARKIFDSVKTKTVVSWSSMIKGYVTHD---QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462 (727)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 462 (727)
+.+..+++.....++.++..|...|...| +.++|+..|++..+.| .++...+..+...|...
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g-------------- 226 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA-------------- 226 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC--------------
Confidence 55666676666667777778888888888 7788888888877766 23333333333333332
Q ss_pred HhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChH
Q 004856 463 KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA-Y--AKHGDWSQCFKLYTQMKQSDVRPDLI 539 (727)
Q Consensus 463 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (727)
....+++++|...|++.. .-+...+..+... | ...+++++|++.|++..+.| +..
T Consensus 227 -----------------~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 227 -----------------TLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp -----------------GGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred -----------------CCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 001134445555554433 2234444444444 2 34566777777777766654 455
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHH
Q 004856 540 TFLGLLTACVNAG-----LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWG 610 (727)
Q Consensus 540 t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 610 (727)
.+..|...|. .| ++++|..+|++.. . -+...+..|..+|.. ..++++|..+|++.-...+.....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 5555555555 34 6777777776554 2 244555566666654 336777777777662222333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 004856 611 PLLSACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIY--AAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 611 ~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 668 (727)
.|...|.. ..|.++|...++++.+..+.+ +...+..+. ...++.++|.++.++..+
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44444432 447788888888887766532 333333332 222355566666665443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=6.2e-13 Score=130.65 Aligned_cols=244 Identities=9% Similarity=0.002 Sum_probs=139.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKT---KTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
.....+...|++++|...|++..+ .+...|..+...|...|++++|+..|++....+..|+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------- 72 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA--------------- 72 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC---------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH---------------
Confidence 344445555555555555554432 13334555555555555555555555555542211111
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQM 529 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 529 (727)
....+..+...|...|++++|...|++.....| +...|..+...|...|++++|++.|++.
T Consensus 73 ------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 ------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred ------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 112244455555555666666666655332222 4456666777777777777777777776
Q ss_pred HHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----C
Q 004856 530 KQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH---MDEARELVKDM----P 601 (727)
Q Consensus 530 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~ 601 (727)
.+. .| +...+..+...+...+++++|...++++.+. .+.+...+..+...+...|+ +++|...++++ .
T Consensus 135 l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 135 IRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred hhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 653 34 3455555552333445777777777777654 12234556666666666666 55566665554 1
Q ss_pred CCCCH------hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 602 FKPDA------RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 602 ~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
..|+. ..|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12331 356667777889999999999999999999999888887776655544
No 43
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1.3e-13 Score=152.52 Aligned_cols=245 Identities=13% Similarity=0.132 Sum_probs=116.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 547 (727)
...++.|...|.+.|++++|++.|++.....| +...|+.+..+|.+.|++++|++.|++.++ +.|+ ...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 44455555555555555555555554322223 344555555555555555555555555554 2342 4445555555
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETEL 624 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 624 (727)
+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|+++ .+.|+ ...|..+...+...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 55555555555555555432 232 344555555555555555555555544 33332 2344444444555555555
Q ss_pred HHHHHHHHHccCCCCc------chHHHHHHHHHhcCChhH--HHH----HHHHHHhCCCccCCceeEE----EECCEEEE
Q 004856 625 AELTAEKLISMEPENA------GNYVLLSNIYAAAGKWNG--VAK----MRTFLRDRGLKKTPGCSWI----EIGKLVHE 688 (727)
Q Consensus 625 A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~--a~~----~~~~m~~~~~~~~~~~~~~----~~~~~~~~ 688 (727)
|++.+++++++.|+.. ..+......+......+. +.+ ......... +.+..... .-+....|
T Consensus 164 A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~klrIG 241 (723)
T 4gyw_A 164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLH--KPPYEHPKDLKLSDGRLRVG 241 (723)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCCSSTTTTTCEEEE
T ss_pred HHHHHHHHHHhChhHHhhccCcccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhhccc--CccccCccccccccccceee
Confidence 5555555544322100 000000000000000000 000 001111000 00000000 11235899
Q ss_pred EEeCC-CCCcChHHHHHHHHHH--HHHHHcccccCc
Q 004856 689 FWAAD-QSHPQADAIYTILGIL--ELEIMEGRRESS 721 (727)
Q Consensus 689 f~~~d-~~hp~~~~i~~~l~~l--~~~~~~~~~~~~ 721 (727)
|+|+| ++||....+...++.+ .+++..+|+.+.
T Consensus 242 yvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~ 277 (723)
T 4gyw_A 242 YVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSP 277 (723)
T ss_dssp EEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSC
T ss_pred eechhhccCcHHHHHHHHHHHhccCceeEEEEEcCC
Confidence 99999 9999999999999998 788888887654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=2.6e-12 Score=131.52 Aligned_cols=246 Identities=9% Similarity=-0.011 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchHhHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVD-FVTIINILPACVNIGA-LEHVKYLHGYSMKLGLNSLSSVNTAIF 477 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 477 (727)
...|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+..++...|+ +++|...++.+++.. +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 356777778888888888888888888875 344 5566777777888886 888888888888876 44677788888
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh-cCCH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVN-AGLV 554 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-~g~~ 554 (727)
.+|.+.|++++|...|++.....| +...|..+..++.+.|++++|+..|+++++. .| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 888999999999999998544344 7789999999999999999999999999984 56 57889999999988 6665
Q ss_pred HHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcC-----
Q 004856 555 EEG-----RIIFKEMKESYGYEPS-QEHYASMVNLLGRAG--HMDEARELVKDMPFKPD-ARVWGPLLSACKMHS----- 620 (727)
Q Consensus 555 ~~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g----- 620 (727)
++| +..+++.... .|+ ...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5778888754 454 668888899999888 68999999888755554 456777777777653
Q ss_pred ---C-HHHHHHHHHHH-HccCCCCcchHHHHHHHHHhc
Q 004856 621 ---E-TELAELTAEKL-ISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 621 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 653 (727)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899998888888887766543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=2.7e-12 Score=124.44 Aligned_cols=198 Identities=11% Similarity=-0.005 Sum_probs=143.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
...+..+...|...|++++|...|++..... .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4455666667777777777777777643323 356677777777888888888888888877642 23566777777778
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
...|++++|..+++++... +..|+ ...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888777652 34453 456777777888888888888888776 2233 455677777778888888888
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...++++++..|++...+..++.++...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888877777888888888888888888888877665
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.8e-11 Score=118.55 Aligned_cols=207 Identities=11% Similarity=0.052 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
...|..+...+...|++++|+..|+++.... +.+...+.. +...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~-----------------------------------la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAA-----------------------------------LAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHH-----------------------------------HHHH
Confidence 3566777777888888888888888777642 122333334 4444
Q ss_pred HHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEG 557 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a 557 (727)
|...|++++|.+.|++.... ..+...|..+...|...|++++|++.++++.+.+..| +...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 44555555555555543221 2356677777778888888888888888877633345 355677777888888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888764 2334667788888888888888888888877 3344 4556677777788899999999999999999
Q ss_pred CCCCcchHH
Q 004856 636 EPENAGNYV 644 (727)
Q Consensus 636 ~p~~~~~~~ 644 (727)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 887765543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=5.3e-12 Score=119.78 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=139.1
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
+...+..+...+...|++++|...|++.....| +...|..+...|...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445556666667777777777777776433233 46677777777777788888888777777642 2356677777777
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHH
Q 004856 548 CVNA-GLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETE 623 (727)
Q Consensus 548 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 623 (727)
+... |++++|...++.+.+. +..|+ ...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 7888888887777752 33343 456777777777788888888777776 2333 3556666777777788888
Q ss_pred HHHHHHHHHHccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 624 LAELTAEKLISMEP-ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 624 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+|...++++++..| ++...+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887777 77777777777778888888888777776544
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.8e-12 Score=124.85 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=137.9
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
....+..+...+...|++++|...|++.....| +...|..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566667777888888888877544334 56777778888888888888888888887742 2356777788888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888764 2345667778888888888888888888876 3333 456777777778888888888
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+..++++++..|++..++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888887665
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=2.8e-11 Score=118.86 Aligned_cols=228 Identities=8% Similarity=-0.066 Sum_probs=138.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFI 478 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 478 (727)
++.++..+...|...|++++|+..|++..+.+ +...+..+...+.. |
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-----------------g------------- 51 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQ-----------------G------------- 51 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-----------------T-------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-----------------C-------------
Confidence 44556666666777777777777777666522 22333334444444 0
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN---- 550 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---- 550 (727)
....|++++|...|++... ..+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|..
T Consensus 52 -~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 52 -QGVEKNLKKAASFYAKACD-LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp -SSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred -CCcCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 0004555555555554322 1245555556666666 666666666666666643 55566666666666
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCH
Q 004856 551 AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDMPFKPDARVWGPLLSACKM----HSET 622 (727)
Q Consensus 551 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~ 622 (727)
.+++++|...+++..+. + +...+..+...|.. .+++++|.+++++.-...+...+..+...+.. .+++
T Consensus 127 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 66777777777666654 2 44455566666666 66777777777665211244555566666666 7777
Q ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 004856 623 ELAELTAEKLISMEPENAGNYVLLSNIYAA----AGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 670 (727)
++|+..++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 203 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777655 5667777777777 777777777777766654
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=6.9e-12 Score=118.30 Aligned_cols=193 Identities=12% Similarity=-0.004 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (727)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33344444444444444444444444321 1122233333333344444444444444433332 222333344444444
Q ss_pred hc-----------CCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 482 KC-----------GCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 482 ~~-----------g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
+. |++++|...|++.....| +...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 666666666666433234 45666677777777777777777777777654 56666777777777
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 550 NAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..|++++|+..|+++.+. .+.+...+..+...+.+.|++++|.+.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777654 1223556666777777777777777776654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.4e-12 Score=125.61 Aligned_cols=215 Identities=13% Similarity=0.026 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
...|..+...+...|++++|+..|++..+.. | .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~----------------------------------~~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--K----------------------------------EDAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHH
Confidence 3456666666666777777777776666532 2 223344444555
Q ss_pred HHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
|.+.|++++|...|++.... +.+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 55566666666666653322 3366778888888888899999999998888753 336777888888889999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
..++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999988865 2345778888889999999999999999887 3333 46678888888999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhc
Q 004856 637 PENAGNYVLLSNIYAAA 653 (727)
Q Consensus 637 p~~~~~~~~l~~~~~~~ 653 (727)
|+++.++..+..+....
T Consensus 224 p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHH 240 (243)
T ss_dssp TTCHHHHHHHTC-----
T ss_pred cchHHHHHHHHHHHhhc
Confidence 99888887766554433
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=6.6e-12 Score=132.72 Aligned_cols=189 Identities=7% Similarity=-0.042 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 471 SVNTAIFISYAKCG---CIEMAGELFDEEKID-SKDIITWNSMISAYAKH----GDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 471 ~~~~~li~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
..+..|..+|.+.| +.++|...|++.... .++...+..+...|... +++++|++.|++.. .| +...+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 36667777777788 888888888874332 45566656677777554 79999999999987 33 556666
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHhhHHHHHH
Q 004856 543 GLLTA-C--VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-----HMDEARELVKDMPFKPDARVWGPLLS 614 (727)
Q Consensus 543 ~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~ll~ 614 (727)
.|... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.++|++.- ..+...+..|..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 66666 3 4689999999999999875 4 6677778888887 55 9999999999998 556667777766
Q ss_pred HHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 004856 615 ACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIYAA----AGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 615 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 671 (727)
.|.. ..+.++|...++++.+. .++.+...|+.+|.. ..+.++|..+++...+.|.
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 6655 34999999999999874 467888999999885 4588999999999888764
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=2.9e-11 Score=118.80 Aligned_cols=224 Identities=9% Similarity=-0.061 Sum_probs=155.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKTK-TVVSWSSMIKGYVT----HDQSLEALRLFSEMKLEGVEVDFVTIINIL 442 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 442 (727)
+..++..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5567788889999999999999999987655 56788889999999 999999999999988765 455555555
Q ss_pred HHHhc----CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHH---
Q 004856 443 PACVN----IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAK--- 515 (727)
Q Consensus 443 ~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~--- 515 (727)
..+.. .+++++|...++...+.+ +...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK------------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHHHHHHCSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC------------------------------------CccHHHHHHHHHHcCCC
Confidence 55555 555555555555544432 44555556666666
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----
Q 004856 516 -HGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN----AGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR---- 586 (727)
Q Consensus 516 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 586 (727)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+...|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCC
Confidence 667777777777766644 44555566666666 67777777777776654 2 34556666677776
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC
Q 004856 587 AGHMDEARELVKDM-PFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEPE 638 (727)
Q Consensus 587 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~ 638 (727)
.+++++|.+++++. ... +...+..+...+.. .++.++|...++++.+.+|+
T Consensus 199 ~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 77777777777765 222 24556666666666 77888888888888877774
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=6e-12 Score=128.79 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC-HHHHHHHHHhccCCCC-CHHHHHHHHHHH
Q 004856 436 VTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGC-IEMAGELFDEEKIDSK-DIITWNSMISAY 513 (727)
Q Consensus 436 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 513 (727)
..+..+...+...|++++|...++.+++.. +.+..+|..+..+|.+.|+ +++|+..|++.....| +...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999876 5567888889999999997 9999999999654445 778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR-AGHMD 591 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 591 (727)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 56 6889999999999999999999999999975 23357789999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHhhHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC--------
Q 004856 592 EA-----RELVKDM-PFKP-DARVWGPLLSACKMHS--ETELAELTAEKLISMEPENAGNYVLLSNIYAAAG-------- 654 (727)
Q Consensus 592 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 654 (727)
+| ++.++++ ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 4566 4568888888888888 689999999998 899999999999999999975
Q ss_pred -ChhHHHHHHHHH-HhC
Q 004856 655 -KWNGVAKMRTFL-RDR 669 (727)
Q Consensus 655 -~~~~a~~~~~~m-~~~ 669 (727)
..++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999988 444
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=4e-11 Score=113.66 Aligned_cols=209 Identities=11% Similarity=-0.030 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFIS 479 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 479 (727)
+..|..+...+...|++++|++.|++..+.. | .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHHH
Confidence 3455556666666666666666666655432 1 122333444444
Q ss_pred HHhcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKH-GDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 556 (727)
|...|++++|...|++.... +.+...|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555543221 23556677777777777 888888888887776333343 5567777777888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP--DARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
|...++++.+. .+.+...+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888877754 2234667777888888888888888888776 2233 44556555566788888888888888888
Q ss_pred ccCCCCcchHHHH
Q 004856 634 SMEPENAGNYVLL 646 (727)
Q Consensus 634 ~~~p~~~~~~~~l 646 (727)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8888777665443
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=2.1e-11 Score=119.64 Aligned_cols=234 Identities=10% Similarity=0.046 Sum_probs=179.5
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh----hHHHHHH
Q 004856 334 LFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKT--KTV----VSWSSMI 407 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li 407 (727)
...+......+...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|++..+ .+. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566778889999999999999999875 34556788899999999999999999987754 222 3488899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHH
Q 004856 408 KGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIE 487 (727)
Q Consensus 408 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 487 (727)
..|...|++++|+..|++..+.. +.+..++..+...|...|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHH
Confidence 99999999999999999887632 223345666777788889999
Q ss_pred HHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC---HHHHHHHHH
Q 004856 488 MAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL---VEEGRIIFK 562 (727)
Q Consensus 488 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~---~~~a~~~~~ 562 (727)
+|...|++.....| +...|..+...+...+++++|++.|++..+. .| +...+..+..++...|+ +++|...++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 99999988665444 5667777773444556999999999999884 45 46778888888888888 788888888
Q ss_pred HhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 004856 563 EMKESYGYEPS------QEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA 606 (727)
Q Consensus 563 ~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 606 (727)
++.+...-.|+ ...|..+...|.+.|++++|.+.++++ ...|+.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 88765323344 257788889999999999999999988 455643
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=1.3e-11 Score=113.15 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
+...|..+...|...|++++|++.|++.++. .| +..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5667888888888999999999999988874 56 5677888888899999999999998888764 23346677778
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 581 VNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
...+...+++++|.+.+.+. ...| +...+..+...+...|++++|+..++++++++|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888899999999888877 3344 456777777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 004856 659 VAKMRTFLRDR 669 (727)
Q Consensus 659 a~~~~~~m~~~ 669 (727)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999987765
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=2.2e-12 Score=135.35 Aligned_cols=262 Identities=12% Similarity=0.026 Sum_probs=162.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhcCCChHHHHHHHHHHHHh----C-CCchHhHHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVD-F----VTIINILPACVNIGALEHVKYLHGYSMKL----G-LNSLSSVNTA 475 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 475 (727)
+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...+..+.+. + .+.....+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344445555555555555554432 21 1 23444444455555555555554444332 1 1223345555
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC------CC-CHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKID------SK-DIITWNSMISAYAKHGD-----------------WSQCFKLYTQMKQ 531 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 531 (727)
+...|...|++++|...|++.... .+ ....|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666777777776666652211 11 23466677777777787 7777777776654
Q ss_pred C----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 004856 532 S----DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-P 601 (727)
Q Consensus 532 ~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 601 (727)
. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1112 2346777788888888888888888877653111112 236777888888888888888888776 1
Q ss_pred CC---C----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 602 FK---P----DARVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 602 ~~---p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.. . ...++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 1 13466667777888999999999999888764432 34777888899999999999998888654
Q ss_pred C
Q 004856 669 R 669 (727)
Q Consensus 669 ~ 669 (727)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=7.3e-12 Score=130.90 Aligned_cols=271 Identities=13% Similarity=0.029 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HH
Q 004856 369 VSVHNSLIDMYCECEDLNCARKIFDSVKT--K-T----VVSWSSMIKGYVTHDQSLEALRLFSEMKLE----GVEVD-FV 436 (727)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 436 (727)
...+..+...+...|++++|...|++..+ + + ...|..+...|...|++++|+..|++.... +-.|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455566667777777777777765542 1 2 235666666777777777777777665432 11111 23
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhC----CC-chHhHHHHHHHHHHhcCC--------------------HHHHHH
Q 004856 437 TIINILPACVNIGALEHVKYLHGYSMKLG----LN-SLSSVNTAIFISYAKCGC--------------------IEMAGE 491 (727)
Q Consensus 437 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~ 491 (727)
.+..+...+...|++++|...+..+.+.. -. ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44455555666666666666655554421 10 112344555555555555 555555
Q ss_pred HHHhccCC---CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHH
Q 004856 492 LFDEEKID---SK----DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 492 ~~~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
.+++.... .+ ....|..+...|...|++++|+..+++..+..- .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55542100 01 123444555555555555555555555543100 011 1244555555555555555555
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC----HhhHHHHHHHHHHcCCHHHHHH
Q 004856 560 IFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-P---FKPD----ARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 560 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
.+++......-.++ ..++..+...|.+.|++++|.+.+++. . ..++ ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554432100011 234445555555555555555555544 0 0011 2234444444555555555555
Q ss_pred HHHHHHccCCCC
Q 004856 628 TAEKLISMEPEN 639 (727)
Q Consensus 628 ~~~~~~~~~p~~ 639 (727)
.+++++++.+..
T Consensus 329 ~~~~al~~~~~~ 340 (406)
T 3sf4_A 329 FAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 555555554433
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=7.5e-12 Score=122.99 Aligned_cols=220 Identities=9% Similarity=0.001 Sum_probs=179.9
Q ss_pred hcCCChHHHHHHHHHHHHhCC---CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHH
Q 004856 446 VNIGALEHVKYLHGYSMKLGL---NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQ 521 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 521 (727)
...|++++|...++.+.+... +.+..++..+...|...|++++|...|++.....| +...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 455789999999999988642 23567888899999999999999999998554344 68899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 004856 522 CFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM- 600 (727)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 600 (727)
|++.|++..+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 336788999999999999999999999999865 455554555556667789999999999776
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 601 PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE----NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 601 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|+......+...+...++.++|...++++++..|. +...+..++.+|...|++++|...+++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 22333333334666688888999999999999987763 3688899999999999999999999998766
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=6.3e-12 Score=127.40 Aligned_cols=262 Identities=14% Similarity=0.045 Sum_probs=178.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-chHhHHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVD-----FVTIINILPACVNIGALEHVKYLHGYSMKL----GLN-SLSSVNTA 475 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 475 (727)
....+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+..+.+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445556666666666666665542 22 234455555666666666666665554432 212 22455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 004856 476 IFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGD--------------------WSQCFKLYTQ 528 (727)
Q Consensus 476 li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 528 (727)
+...|...|++++|...+++.... .++ ..++..+...|...|+ +++|++.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 777788888888888877763211 122 3467777888888888 8888888877
Q ss_pred HHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 529 MKQS----DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKD 599 (727)
Q Consensus 529 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 599 (727)
.... +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 1112 2346778888889999999999999887643111112 33778888999999999999999887
Q ss_pred C-C---CCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 600 M-P---FKPD----ARVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 600 ~-~---~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
. . ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 1 1111 3466667777999999999999999998865432 34778899999999999999999998
Q ss_pred HHhC
Q 004856 666 LRDR 669 (727)
Q Consensus 666 m~~~ 669 (727)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.9e-12 Score=136.41 Aligned_cols=193 Identities=8% Similarity=-0.050 Sum_probs=153.5
Q ss_pred hHhHHHHHHHHHHhcCCH-HHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCI-EMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLT 546 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 546 (727)
+...+..+...|...|++ ++|.+.|++.....| +...|..+...|...|++++|++.|++..+ +.|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 445555555566666666 666666665332234 577888888888888899999998888887 4577778888888
Q ss_pred HHHhc---------CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 004856 547 ACVNA---------GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA--------GHMDEARELVKDM-PFKP---- 604 (727)
Q Consensus 547 ~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p---- 604 (727)
++... |++++|+..++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8899999999888865 233467888888888888 8899999999887 4455
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTF 665 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 665 (727)
+...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678888888899999999999999999999999999999999999999999999875543
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.9e-09 Score=115.27 Aligned_cols=218 Identities=6% Similarity=-0.059 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHH-HHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004856 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVK-YLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEE 496 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 496 (727)
.+..+|++.... ..-+...|.....-+...|+.+.|. .+++...... +.+...+-..+....+.|+++.|..+|++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455677777764 2335566666666677778888886 9999888743 556677778888899999999999999985
Q ss_pred cCC-----------CCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhc-
Q 004856 497 KID-----------SKD------------IITWNSMISAYAKHGDWSQCFKLYTQMKQS-DVRPDLITFLGLLTACVNA- 551 (727)
Q Consensus 497 ~~~-----------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~- 551 (727)
... .|+ ...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 421 132 236888888888899999999999999885 2 12334444333333333
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHhhHHHHHHHHHHcCCHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP----DARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999863 345667778889888999999999999987 3333 3458888888889999999999
Q ss_pred HHHHHHHccCCCCc
Q 004856 627 LTAEKLISMEPENA 640 (727)
Q Consensus 627 ~~~~~~~~~~p~~~ 640 (727)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999754
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1e-11 Score=129.76 Aligned_cols=269 Identities=12% Similarity=-0.012 Sum_probs=180.4
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----C
Q 004856 332 ADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ---VSVHNSLIDMYCECEDLNCARKIFDSVKT-----K----T 399 (727)
Q Consensus 332 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~ 399 (727)
+....+......+...|++++|...++.+++...... ..++..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555666677788888888888888887742211 24677777888888888888887766431 1 2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCC--------------------hHHH
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLEGV-EVD----FVTIINILPACVNIGA--------------------LEHV 454 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~--------------------~~~a 454 (727)
..+|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34677777888888888888888887765210 011 3356666777777888 8888
Q ss_pred HHHHHHHHHh----CC-CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHH
Q 004856 455 KYLHGYSMKL----GL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 455 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A 522 (727)
...+....+. +. +....++..+...|...|++++|...|++.... .++ ...|..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8877765542 21 122446677777888888888888888873321 222 23677777888888888888
Q ss_pred HHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHH
Q 004856 523 FKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 523 ~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 593 (727)
+..+++..+..- .++ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887765210 011 456777788888888888888888877643111111 44677778888888888888
Q ss_pred HHHHHhC
Q 004856 594 RELVKDM 600 (727)
Q Consensus 594 ~~~~~~~ 600 (727)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=4.4e-10 Score=112.38 Aligned_cols=221 Identities=8% Similarity=-0.003 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------cCCCh-------HHHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 004856 417 LEALRLFSEMKLEGVEVDFVTIINILPACV-------NIGAL-------EHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (727)
++|+.+|++..... +-+...|..+...+. ..|+. ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777666531 223334444444433 34654 6777777777763223455677777888888
Q ss_pred cCCHHHHHHHHHhccCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCCHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSKD-II-TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACV-NAGLVEEGRI 559 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~ 559 (727)
.|++++|..+|++.....|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888886554553 33 78888888888888888888888888743 234444544333322 2688888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004856 560 IFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-P---FKP--DARVWGPLLSACKMHSETELAELTAEKLI 633 (727)
Q Consensus 560 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 633 (727)
+|+...+.+ +-+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887652 234677888888888888888888888877 2 344 34578888888888888888888888888
Q ss_pred ccCCCCcc
Q 004856 634 SMEPENAG 641 (727)
Q Consensus 634 ~~~p~~~~ 641 (727)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88886553
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=3.6e-11 Score=110.14 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=141.8
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA 547 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 547 (727)
++.+|..+...|.+.|++++|...|++.....| +...|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 466788888889999999999999998544344 67889999999999999999999999998843 3356778888888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998864 3345778889999999999999999999987 4455 556788888889999999999
Q ss_pred HHHHHHHHccCCCC
Q 004856 626 ELTAEKLISMEPEN 639 (727)
Q Consensus 626 ~~~~~~~~~~~p~~ 639 (727)
+..++++++++|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999999864
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=2.4e-11 Score=127.30 Aligned_cols=266 Identities=15% Similarity=0.037 Sum_probs=162.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHH
Q 004856 340 AVSSISTMKNIEWGKQMHANVLRNGSDYQV----SVHNSLIDMYCECEDLNCARKIFDSVKTK---------TVVSWSSM 406 (727)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l 406 (727)
+...+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..+. ...+|..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334455556666666666665555311 11 24445555555555555555554443210 11234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCchHhHHHHHHHHHHhcCC
Q 004856 407 IKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLG-LNSLSSVNTAIFISYAKCGC 485 (727)
Q Consensus 407 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 485 (727)
...|...|++++|+..|++..... .+.+ .+.....+..+...|...|+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHcCc
Confidence 444444455555544444433210 0001 11223455566666777777
Q ss_pred -----------------HHHHHHHHHhccCC-----C-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC---
Q 004856 486 -----------------IEMAGELFDEEKID-----S-K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPD--- 537 (727)
Q Consensus 486 -----------------~~~A~~~~~~~~~~-----~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 537 (727)
+++|...+++.... . + ....|..+...|...|++++|+..+++..+..- .++
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777666652210 1 1 234777788889999999999999988876310 012
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-
Q 004856 538 -LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-PF------KP- 604 (727)
Q Consensus 538 -~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p- 604 (727)
..++..+..++...|++++|...+++......-..+ ...+..+...|.+.|++++|.+.+++. .. .+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 236788888999999999999999887754111111 457788899999999999999999877 11 11
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
...++..+...+...|++++|...+++++++.+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 123667777779999999999999999998766
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=9.7e-11 Score=121.37 Aligned_cols=223 Identities=8% Similarity=-0.043 Sum_probs=133.7
Q ss_pred HhcCCChHHHHHHHHHHHHh----CCCc-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CC-----CHHHHHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKL----GLNS-LSSVNTAIFISYAKCGCIEMAGELFDEEKID---SK-----DIITWNSMIS 511 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~~li~ 511 (727)
+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++.... .+ ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555544432 1111 2344555556666666666666666552110 11 1346677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS-QEHYASMVN 582 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~ 582 (727)
.|...|++++|++.|++..+..- .++ ..++..+..+|...|++++|...+++..+.. +..|+ ..++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77788888888887777664210 011 2367777778888888888888887766510 12132 456777778
Q ss_pred HHHhcCCHHHHHHHHHhC-C-----CCCCH-hhHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 583 LLGRAGHMDEARELVKDM-P-----FKPDA-RVWGPLLSACKMHSE---TELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~-----~~p~~-~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
.|.+.|++++|.+.+++. . ..|.. ..+..+...+...|+ .++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 888888888888887766 1 12222 223444445667777 66666666665 2233345567788888888
Q ss_pred cCChhHHHHHHHHHHh
Q 004856 653 AGKWNGVAKMRTFLRD 668 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~ 668 (727)
.|++++|.+++++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887654
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=5.4e-09 Score=114.22 Aligned_cols=437 Identities=10% Similarity=0.011 Sum_probs=273.0
Q ss_pred CCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCC---hHHHH
Q 004856 212 GKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLAS---LEDAK 288 (727)
Q Consensus 212 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 288 (727)
....+-+..|++-.... +-|..+|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.+. .+.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34555565666665554 457788889999888888899999999998877 46667788888888888888 88888
Q ss_pred HHHhcCCC-----CCeehHHHHHHHHHhcCCc----hH----HHHHHHHHHH-cCC-CCCh-hhHHHHHHHhhc------
Q 004856 289 MLFDKMSD-----KDRVVWNIMISAYYQSGFP----KE----SLELLMCMVR-SGF-RADL-FTAIAAVSSIST------ 346 (727)
Q Consensus 289 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------ 346 (727)
.+|++... +++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 88888654 5666777766655555443 22 3356655433 355 4543 344444433221
Q ss_pred ---CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 004856 347 ---MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLF 423 (727)
Q Consensus 347 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 423 (727)
.++++.+..+|..++......-..+|......-...+. ..+.++ +.- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHH
Confidence 12345566666666532111111222221111100000 001111 100 112333444444
Q ss_pred HHHHH--CCCC---------------C-----C---HHHHHHHHHHHhcCC-------ChHHHHHHHHHHHHhCCCchHh
Q 004856 424 SEMKL--EGVE---------------V-----D---FVTIINILPACVNIG-------ALEHVKYLHGYSMKLGLNSLSS 471 (727)
Q Consensus 424 ~~m~~--~g~~---------------p-----~---~~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 471 (727)
.++.. .++. | + ...|...+.---..+ ..+.+..+++.++..- +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 44321 1110 1 0 012223332221211 1233455677776653 45677
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---
Q 004856 472 VNTAIFISYAKCGCIEMAG-ELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD---------VRPD--- 537 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~--- 537 (727)
+|-..+..+.+.|+.++|. .+|++.....| +...|-..+...-+.|++++|.++|++++... -.|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 7888888888899999996 99998443344 66778888999999999999999999998631 0142
Q ss_pred ---------hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCC
Q 004856 538 ---------LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-HMDEARELVKDM--PFKPD 605 (727)
Q Consensus 538 ---------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~ 605 (727)
...|...+....+.|..+.|..+|..+.+. ...+....|...+..-.+.| +.+.|.++|+.. ....+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777788888889999999999999864 11223445554454445554 589999999987 23335
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPE---NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 606 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
...|...+......|+.+.|..+|++++...|+ ....+...+..-.+.|+.+.+..+.+++.+.-
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 667888888888899999999999999998773 34567788888888999999999999987654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=5e-10 Score=111.94 Aligned_cols=215 Identities=9% Similarity=0.081 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhCCCchHhHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC-CCC-CHHHHHHHHHHHHH
Q 004856 452 EHVKYLHGYSMKLGLNSLSSVNTAIFISYA-------KCGCI-------EMAGELFDEEKI-DSK-DIITWNSMISAYAK 515 (727)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~-~~~~~~~li~~~~~ 515 (727)
++|..+++.+++.. +.+...|..++..+. +.|++ ++|..+|++... ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777753 456667777776665 35886 999999999665 355 56799999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDVRPD-LI-TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLG-RAGHMDE 592 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 592 (727)
.|++++|.++|++.++ +.|+ .. .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 5675 43 7999999999999999999999999853 2334555654444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004856 593 ARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISM---EPE-NAGNYVLLSNIYAAAGKWNGVAKMRTFL 666 (727)
Q Consensus 593 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 666 (727)
|.++|++. ...| +...|..++..+...|+.++|..+|+++++. .|+ ....+..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3334 5678988998899999999999999999995 443 5668888999999999999999999998
Q ss_pred HhCCC
Q 004856 667 RDRGL 671 (727)
Q Consensus 667 ~~~~~ 671 (727)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 77643
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=7.7e-11 Score=119.31 Aligned_cols=134 Identities=13% Similarity=0.011 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----h
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDV-RPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----Q 574 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 574 (727)
..+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566666667777777777777776654210 011 235667777777778888887777776543111111 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-C------CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-P------FKP-DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.++..+...|...|++++|.+.++++ . ..+ ...++..+...+...|++++|...+++++++.+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 46677777888888888888877765 1 111 123566667778888888888888888887765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=124.25 Aligned_cols=244 Identities=10% Similarity=0.052 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CC
Q 004856 400 VVSWSSMIKGYVTHDQSLEALRLFSEMKLE-------GVEVDFVTIINILPACVNIGALEHVKYLHGYSMKL------GL 466 (727)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~ 466 (727)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 356788888889999999999999888762 11222345555666666777777777766665543 11
Q ss_pred -CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 004856 467 -NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--------SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQS---- 532 (727)
Q Consensus 467 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 532 (727)
+.....+..+...|...|++++|...|++.... .| ....|..+...|...|++++|++.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 222344445555555555555555555542210 01 1233444444555555555555555554432
Q ss_pred --CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 533 --DVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESY------GYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 533 --g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
+-.|+ ..++..+..++...|++++|...++++.+.. ...+........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------------- 243 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH----------------------- 243 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-----------------------
Confidence 11121 2234444444555555555555554444310 000000000000
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...+..+...+...+.+.++...++++....|....++..++.+|...|++++|.+++++..+
T Consensus 244 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 --AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 001111112233344444555566666666666666777777777777777777777776543
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=3.3e-10 Score=103.48 Aligned_cols=162 Identities=16% Similarity=0.068 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444445555555555555555554421 123444555555555555555555555555543 122344555555555
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 585 GRAGHMDEARELVKDM-PF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
...|++++|.+.++++ .. ..+...+..+...+...|++++|...++++++..|.++.++..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5556666655555554 11 223445555666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHhC
Q 004856 663 RTFLRDR 669 (727)
Q Consensus 663 ~~~m~~~ 669 (727)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7766543
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=1.9e-10 Score=122.34 Aligned_cols=180 Identities=11% Similarity=0.014 Sum_probs=158.2
Q ss_pred CHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDW-SQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
.++++...+++.....| +...|..+...|...|++ ++|++.|++..+. .| +...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666677766554444 678899999999999999 9999999999984 46 5789999999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc--------CCH
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRA---------GHMDEARELVKDM-PFKP-DARVWGPLLSACKMH--------SET 622 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~ 622 (727)
++..+ +.|+...+..+...|... |++++|++.++++ ...| +...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99984 568888999999999999 9999999999988 4455 567888888888888 999
Q ss_pred HHHHHHHHHHHccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 623 ELAELTAEKLISMEP---ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 623 ~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
++|+..++++++++| .++.++..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999988765
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=2.2e-10 Score=118.72 Aligned_cols=231 Identities=7% Similarity=-0.012 Sum_probs=167.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--C----CchHhHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLE----GVEV-DFVTIINILPACVNIGALEHVKYLHGYSMKLG--L----NSLSSVNT 474 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 474 (727)
....+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777788887777777653 1111 22456666677777788888777777666521 1 12245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQS----DVRP-DLITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~ 542 (727)
.+...|...|++++|...|++.... .++ ..++..+...|...|++++|++.+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888889999999999988873311 122 247888999999999999999999998762 2224 366789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHh-hHHHHHHH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESY---GYEPSQEHYASMVNLLGRAGH---MDEARELVKDMPFKPDAR-VWGPLLSA 615 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 615 (727)
.+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999877531 111123346678888999999 999999999986555443 56667777
Q ss_pred HHHcCCHHHHHHHHHHHHccC
Q 004856 616 CKMHSETELAELTAEKLISME 636 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~ 636 (727)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=2.1e-11 Score=122.23 Aligned_cols=242 Identities=13% Similarity=0.073 Sum_probs=166.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 004856 368 QVSVHNSLIDMYCECEDLNCARKIFDSVKT--------K---TVVSWSSMIKGYVTHDQSLEALRLFSEMKLE------G 430 (727)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 430 (727)
+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988754 2 2357888999999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------CC-CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---
Q 004856 431 VEV-DFVTIINILPACVNIGALEHVKYLHGYSMKL------GL-NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID--- 499 (727)
Q Consensus 431 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 499 (727)
-.| ....+..+...+...|++++|...+..+.+. +. +.....+..+...|...|++++|...|++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3456788888999999999999999988875 32 334567888999999999999999999984321
Q ss_pred -----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 500 -----SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSD-------VRPDLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 500 -----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
.| ....+..+...|...|++++|.+.++++.+.. ..|.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 22 34578889999999999999999999998731 1111000000
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP-FKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 567 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
....+..+...+...+.+.+|...+.+.. ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 243 ------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 ------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 01112222333344555555555555552 233 3346677777788888888888888888877663
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.4e-09 Score=99.23 Aligned_cols=170 Identities=16% Similarity=0.062 Sum_probs=144.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
...+..+...+...|++++|...|++.....| +...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677888999999999999999765544 67888999999999999999999999998853 33678888999999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHH
Q 004856 549 VNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875 3456778899999999999999999999987 3334 5678888888899999999999
Q ss_pred HHHHHHHccCCCCcch
Q 004856 627 LTAEKLISMEPENAGN 642 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~ 642 (727)
..++++++..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=7.3e-09 Score=106.70 Aligned_cols=261 Identities=13% Similarity=0.017 Sum_probs=156.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-chHhHHHHHHHH
Q 004856 409 GYVTHDQSLEALRLFSEMKLEGVEVDFV----TIINILPACVNIGALEHVKYLHGYSMKL----GLN-SLSSVNTAIFIS 479 (727)
Q Consensus 409 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~ 479 (727)
.+...|++++|...+++........+.. .+..+...+...|++++|...+....+. +.. .....+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344555555555555554432111111 2233334445555555555555544431 111 012234455666
Q ss_pred HHhcCCHHHHHHHHHhccCC-----C---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--ChHHHHHHHH
Q 004856 480 YAKCGCIEMAGELFDEEKID-----S---K-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR--P--DLITFLGLLT 546 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~-----~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 546 (727)
+...|++++|...+++.... . | ....+..+...+...|++++|...+++..+..-. + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 77777777777777752210 1 2 1345566777888888888888888887753211 1 1346777788
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HhhHHHHHHH
Q 004856 547 ACVNAGLVEEGRIIFKEMKESYGYEPSQEHYA-----SMVNLLGRAGHMDEARELVKDM-PFKPD-----ARVWGPLLSA 615 (727)
Q Consensus 547 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~ 615 (727)
.+...|++++|...+++......-......+. ..+..+...|++++|..++++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999988888765411111111121 2334477889999999988887 22221 1245556666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCC-----C-cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 616 CKMHSETELAELTAEKLISMEPE-----N-AGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...|+.++|...++++++..+. + ..++..++.++...|+.++|...+++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88889999999998888765332 1 136667788888999999999888876543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=7.2e-10 Score=105.35 Aligned_cols=206 Identities=13% Similarity=0.065 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMIS 511 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~ 511 (727)
.|+..+......+...|++++|...+....+...+++...+..+...|.+.|++++|...|++.....| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677777788888899999999988888877535666666688888888888888888888554455 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRPD-L-------ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QEHYASM 580 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 580 (727)
.|...|++++|++.+++..+. .|+ . ..|..+...+...|++++|+..|+++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888874 453 4 4577777788888888888888888874 4565 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 581 VNLLGRAGHMDEARELVKDM-PF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
...|...|+. .++++ .. ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777655543 22222 11 11233333322 34456689999999999999999888777776553
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=1.1e-09 Score=104.02 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=105.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKID-S-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLL 545 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 545 (727)
++..+......|.+.|++++|...|++.... + ++...|..+..++...|++++|++.|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 3445555556666666666666666653222 2 4555555566666666666666666666665 3343 44566666
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--H-hhHHHHH
Q 004856 546 TACVNAGLVEEGRIIFKEMKESYGYEPS-Q-------EHYASMVNLLGRAGHMDEARELVKDM-PFKPD--A-RVWGPLL 613 (727)
Q Consensus 546 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~-~~~~~ll 613 (727)
.++...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|++.++++ ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666643 222 2 33555555666666666666666655 44454 2 2344443
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 614 SACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 614 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..+. ..+...++++..+.+.+...|... .....+.+++|...+++..+.
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 3342 233344555555554443333322 233345568999999888765
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=7.1e-10 Score=114.55 Aligned_cols=223 Identities=8% Similarity=-0.039 Sum_probs=137.1
Q ss_pred HhcCCChHHHHHHHHHHHHhC--C---CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CC-----CHHHHHHHHH
Q 004856 445 CVNIGALEHVKYLHGYSMKLG--L---NSLSSVNTAIFISYAKCGCIEMAGELFDEEKID---SK-----DIITWNSMIS 511 (727)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~-----~~~~~~~li~ 511 (727)
+...|++++|...+..+.+.. . +....++..+...|...|+++.|...+++.... .+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445566666666655555421 0 112345556666677777777776666652110 11 1346677777
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCChhHHHHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQS----DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPSQEHYASMVNL 583 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 583 (727)
.|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888776652 1111 13457777788888888888888888776511 112225567778888
Q ss_pred HHhcCCHHHHHHHHHhC----CC--CCCHh-hHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 584 LGRAGHMDEARELVKDM----PF--KPDAR-VWGPLLSACKMHSE---TELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~----~~--~p~~~-~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
|.+.|++++|.+.+++. .. .|... .+..+...+...++ .++|...+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888888776 11 22222 33333334666666 66666666652 12233345667888888888
Q ss_pred CChhHHHHHHHHHHh
Q 004856 654 GKWNGVAKMRTFLRD 668 (727)
Q Consensus 654 g~~~~a~~~~~~m~~ 668 (727)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=3.6e-08 Score=101.68 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=165.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----CC-chHhHHH
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGV-EVD----FVTIINILPACVNIGALEHVKYLHGYSMKLG-----LN-SLSSVNT 474 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~ 474 (727)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888887765311 122 2455666777788888888888777766521 11 1345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQ-----SDVRPDLITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 542 (727)
.+...|...|++++|.+.|++.... .++ ..+++.+...|...|++++|++.+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888999999998888873211 122 34778888999999999999999999876 32 22366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCC--CC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHh-hHHHHHHH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYE--PS-QEHYASMVNLLGRAGH---MDEARELVKDMPFKPDAR-VWGPLLSA 615 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 615 (727)
.+..++.+.|++++|...+++..+...-. |. ...+..+...|...|+ +.+|...+++.+..|+.. .+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 89999999999999999999988752221 22 3456677777888888 999999999976555443 55566667
Q ss_pred HHHcCCHHHHHHHHHHHHcc
Q 004856 616 CKMHSETELAELTAEKLISM 635 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~ 635 (727)
+...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=1.4e-09 Score=120.45 Aligned_cols=164 Identities=17% Similarity=0.245 Sum_probs=147.9
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhH
Q 004856 500 SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEH 576 (727)
Q Consensus 500 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 576 (727)
.| +...|+.+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++.+.|++++|+..|++..+. .|+ ...
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a 79 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADA 79 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHH
Confidence 45 467899999999999999999999999998 5674 788999999999999999999999999864 555 779
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
|..+..+|.+.|++++|++.+++. .+.|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 999999999999999999999988 55664 5688888889999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 004856 655 KWNGVAKMRTFLRD 668 (727)
Q Consensus 655 ~~~~a~~~~~~m~~ 668 (727)
+|++|.+.+++..+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988754
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=4.6e-09 Score=103.92 Aligned_cols=215 Identities=10% Similarity=-0.006 Sum_probs=121.2
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCChHHHHHHH
Q 004856 384 DLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLE----GVEVD-FVTIINILPACVNIGALEHVKYLH 458 (727)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 458 (727)
++++|...|+.. ...|...|++++|+..|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776653 66677778888888877766542 11111 233444444444444444444444
Q ss_pred HHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC
Q 004856 459 GYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH-GDWSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 459 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~ 537 (727)
+...+. +...|+... -..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~-------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~ 150 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRR-------------GANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQ 150 (292)
T ss_dssp HHHHHH---------------HHHTTCHHH-------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHH---------------HHHcCCHHH-------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHh
Confidence 433321 011111111 123566677777775 8888888877777652 221
Q ss_pred -------hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 004856 538 -------LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-----EHYASMVNLLGRAGHMDEARELVKDM-PFKP 604 (727)
Q Consensus 538 -------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 604 (727)
..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2456777777888888888888888777541111111 14566677777788888888888776 4444
Q ss_pred CHh------hHHHHHHHHH--HcCCHHHHHHHHHHHHccCCCC
Q 004856 605 DAR------VWGPLLSACK--MHSETELAELTAEKLISMEPEN 639 (727)
Q Consensus 605 ~~~------~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~ 639 (727)
+.. .+..++.++. ..+++++|+..|+++..++|..
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 322 2233344443 3456777777777777777644
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=1.2e-09 Score=107.33 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCC
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQS------DVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY-----GYE 571 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~ 571 (727)
.+|..+...|...|++++|++.+++..+. .-.| ...++..+...+...|++++|..+++++.+.. +..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555666666666666666555542 0012 23455556666666666666666666555320 001
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----------CCCCCHh-hHHHHHHHHHHcCC------HHHHHHHHHHHH
Q 004856 572 P-SQEHYASMVNLLGRAGHMDEARELVKDM----------PFKPDAR-VWGPLLSACKMHSE------TELAELTAEKLI 633 (727)
Q Consensus 572 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~~~-~~~~ll~~~~~~g~------~~~A~~~~~~~~ 633 (727)
| ...++..+...|.+.|++++|.++++++ ...+... .|..+.......+. +..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 1345556666666666666666666554 0122222 22222222222221 222333333222
Q ss_pred ccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 634 SMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 634 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
...|....++..++.+|...|++++|..++++..+
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344456677788888888888888888877654
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=5.7e-08 Score=93.99 Aligned_cols=176 Identities=12% Similarity=0.009 Sum_probs=109.8
Q ss_pred HHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 489 AGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 489 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
|...|++.... .++...+..+..++...|++++|++++.+.+..+-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555553322 3445555566667777777777777777766544212 345566677777777777777777777764
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 004856 567 SYGYEP-----SQEHYASMVNL--LGRAG--HMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISM- 635 (727)
Q Consensus 567 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~- 635 (727)
. .| +..+...|+.+ ....| +..+|..+|+++ ...|+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444444444 22233 777777777777 23344233334444677778888888887776665
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 636 ---------EPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 636 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777777767667776 777777777666
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=1.7e-07 Score=96.33 Aligned_cols=162 Identities=10% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC----chHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--CC-CHHHHH----
Q 004856 439 INILPACVNIGALEHVKYLHGYSMKLGLN----SLSSVNTAIFISYAKCGCIEMAGELFDEEKID--SK-DIITWN---- 507 (727)
Q Consensus 439 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~---- 507 (727)
..+...+...|++++|...+....+.... .....+..+...+...|++++|...+++.... .+ +...|.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 33444445555555555555544432211 11234445555566666666666666552110 11 111121
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCCh-hHHHH
Q 004856 508 -SMISAYAKHGDWSQCFKLYTQMKQSDVRPD---LITFLGLLTACVNAGLVEEGRIIFKEMKES---YGYEPSQ-EHYAS 579 (727)
Q Consensus 508 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~ 579 (727)
..+..+...|++++|...+++.......++ ...+..+..++...|++++|...++..... .+..++. ..+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 122335566666666666666654321111 123455566666667777776666655432 1222222 25555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 004856 580 MVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~ 600 (727)
+...+...|+.++|...+++.
T Consensus 299 la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 666666777777777766655
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.1e-08 Score=97.44 Aligned_cols=202 Identities=10% Similarity=-0.005 Sum_probs=116.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITF 541 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~ 541 (727)
...+-.+...+.+.|++++|...|+++....|+ ...+..+..+|.+.|++++|+..|++..+. .|+ ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 334444444555555555555555554333332 344555555555555555555555555552 221 2334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHH
Q 004856 542 LGLLTACVN--------AGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPL 612 (727)
Q Consensus 542 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 612 (727)
..+..++.. .|++++|...|+++.+. .|+ ......+.......+.+. ..+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~---------------~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLA---------------RKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 444555555 55555555555555543 122 111111111100000000 113455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeE
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAA----------GKWNGVAKMRTFLRDRGLKKTPGCSW 679 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~ 679 (727)
...+...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 6668999999999999999999999754 5788999999877 89999999999887652
Q ss_pred EEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHH
Q 004856 680 IEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIM 714 (727)
Q Consensus 680 ~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~ 714 (727)
+.+|........+..+ .++..
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2366667777777777 44443
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.3e-08 Score=98.77 Aligned_cols=205 Identities=11% Similarity=0.028 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCc--hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC---C-HHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNS--LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK---D-IITW 506 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~ 506 (727)
.+...+......+...|++++|...+..+.+..... ....+..+..+|.+.|++++|...|++.....| . ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345667777788899999999999999998865221 266778888999999999999999999654334 2 3567
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHH
Q 004856 507 NSMISAYAK--------HGDWSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHY 577 (727)
Q Consensus 507 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 577 (727)
..+..++.. .|++++|+..|++.++. .|+. .....+. .+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHHH
Confidence 778888888 99999999999999984 4643 2222211 11111110 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCcc-
Q 004856 578 ASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSACKMH----------SETELAELTAEKLISMEPENAG- 641 (727)
Q Consensus 578 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~- 641 (727)
..+...|.+.|++++|+..++++ ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 55677778888888888888776 22333 23455555556544 8899999999999999998764
Q ss_pred --hHHHHHHHHHhcCChhH
Q 004856 642 --NYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 642 --~~~~l~~~~~~~g~~~~ 658 (727)
+...+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34455555555555543
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=1.7e-08 Score=110.36 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=146.8
Q ss_pred cCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
.|++++|...|++.....| +...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678888888888654445 5788999999999999999999999999984 45 577899999999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc---CCHHHHHHHHHHHHcc
Q 004856 561 FKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH---SETELAELTAEKLISM 635 (727)
Q Consensus 561 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~ 635 (727)
+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999875 2334678899999999999999999999987 4445 456788888889999 9999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChhH----HHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCC-CCCcChHHHHHHHHH
Q 004856 636 EPENAGNYVLLSNIYAAAGKWNG----VAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAAD-QSHPQADAIYTILGI 708 (727)
Q Consensus 636 ~p~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d-~~hp~~~~i~~~l~~ 708 (727)
+|.+...+..++ ..+.+. +..++.........+.+...-..-+....++++.+ ..|+....+...+..
T Consensus 158 ~p~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~ 230 (568)
T 2vsy_A 158 GVGAVEPFAFLS-----EDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEA 230 (568)
T ss_dssp TCCCSCHHHHTT-----SCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCcccChHHHhC-----CCCHHHHHHHHHHHHHhccCcccCCCCCCCCCCCCCeEEEEECcccccChHHHHHHHHHhh
Confidence 999888887766 333322 22222222222221111100001223467888877 667766666666666
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=1e-08 Score=101.49 Aligned_cols=201 Identities=13% Similarity=0.016 Sum_probs=143.4
Q ss_pred ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CC--CHHHHHHHHHHHHHcCChHHH
Q 004856 450 ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID-----SK--DIITWNSMISAYAKHGDWSQC 522 (727)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A 522 (727)
++++|...+... ...|...|++++|...|++.... .| ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367776666554 34577889999999888863211 12 146888999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--hHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 004856 523 FKLYTQMKQSDV---RPD--LITFLGLLTACVNA-GLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 523 ~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 592 (727)
+..|++..+... .+. ..++..+..+|... |++++|+..|++..+.+.-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876210 111 35788899999996 9999999999998764211111 3568889999999999999
Q ss_pred HHHHHHhC-CCCCCHh--------hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch-----HHHHHHHHH--hcCCh
Q 004856 593 ARELVKDM-PFKPDAR--------VWGPLLSACKMHSETELAELTAEKLISMEPENAGN-----YVLLSNIYA--AAGKW 656 (727)
Q Consensus 593 A~~~~~~~-~~~p~~~--------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 656 (727)
|+..+++. ...|+.. .|..+...+...|++++|+..++++++++|..... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 3333221 45666677889999999999999999999975543 344556664 45678
Q ss_pred hHHHHHHHH
Q 004856 657 NGVAKMRTF 665 (727)
Q Consensus 657 ~~a~~~~~~ 665 (727)
++|+..++.
T Consensus 257 ~~A~~~~~~ 265 (292)
T 1qqe_A 257 SEHCKEFDN 265 (292)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 888877754
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=5e-08 Score=92.22 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----HHHH
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKIDSKD----IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL----ITFL 542 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~ 542 (727)
..+..+...+.+.|++++|...|+++....|+ ...+..+..+|.+.|++++|+..|++..+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 34444556677788888888888875433343 246667777888888888888888887763 3432 1344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 004856 543 GLLTACVN------------------AGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFK 603 (727)
Q Consensus 543 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 603 (727)
.+..++.. .|++++|...|+.+.+. .|+. ..+..+.... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH---------
Confidence 44444443 34566666666666543 2331 1221111100 000000
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 604 PDARVWGPLLSACKMHSETELAELTAEKLISMEPENA---GNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112344558899999999999999999999875 57889999999999999999999999887654
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=2e-08 Score=98.47 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=101.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKID--------SK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQS------DV 534 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 534 (727)
..++..+...|...|++++|...|++.... .| ....|..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555566666666666666666652211 12 3456777888888888888888888888763 11
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhC
Q 004856 535 RP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESY------GYEPS-QEHYASMVNLLGRAG------HMDEARELVKDM 600 (727)
Q Consensus 535 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~ 600 (727)
.| ...++..+..++...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 33 24578888888999999999999998877531 11222 223444444333322 345555555555
Q ss_pred C-CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 004856 601 P-FKPD-ARVWGPLLSACKMHSETELAELTAEKLISM 635 (727)
Q Consensus 601 ~-~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 635 (727)
. ..|+ ..++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 2233 346777777899999999999999998875
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=1.1e-09 Score=96.07 Aligned_cols=139 Identities=10% Similarity=0.017 Sum_probs=98.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGH 589 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 589 (727)
.+...|++++|++.+.+... ..| +...+..+...|...|++++|++.|++..+. .| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence 34455667777777776654 234 2445566777777777777777777777754 33 35677777777777777
Q ss_pred HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHH-HHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 590 MDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAEL-TAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 590 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
+++|+..|++. .+.| +...|..+...+...|+.++|.. .++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777766 4455 35567777777888888776555 4689999999999999988888888875
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=1e-07 Score=92.24 Aligned_cols=243 Identities=10% Similarity=-0.021 Sum_probs=161.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHH
Q 004856 379 YCECEDLNCARKIFDSVKTKTVV-SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYL 457 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 457 (727)
..-.|.+..+..-...+...+.. .---+.++|...|+++.. ..-.|....+..+. .|...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHH
Confidence 34568888877766655433322 222344677777776632 11233433333333 333322 4555
Q ss_pred HHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 004856 458 HGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK---DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV 534 (727)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (727)
++.....+ .++......+..+|...|++++|++++.+.....| +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 55555544 34444445778889999999999999998633232 556777888999999999999999999988 4
Q ss_pred CC-----ChHHHHHHHHH--HHhcC--CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC--
Q 004856 535 RP-----DLITFLGLLTA--CVNAG--LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF-- 602 (727)
Q Consensus 535 ~p-----~~~t~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 602 (727)
.| +..+...|..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|++.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 67 35666667666 33334 899999999999754 455333344445888999999999999865 21
Q ss_pred --------CC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 603 --------KP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 603 --------~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
.| +..+.-.++......|+ +|.++++++.+..|+++...
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 25 44455455556566676 89999999999999887554
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=6e-08 Score=82.72 Aligned_cols=130 Identities=22% Similarity=0.324 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 34455555556666666666666655532 223445555555555666666666666655543 122233444444444
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.+.|++++|.++++++ ...| +...+..+...+...|++++|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 4444444444444433 1111 223333333334444444444444444444333
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=4.5e-08 Score=83.53 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.++++++ ...| +...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5677888999999999999999999875 2345778888999999999999999999987 3333 5667888888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|++++|...++++++..|.+...+..++.++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999988664
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=6.9e-09 Score=115.51 Aligned_cols=191 Identities=11% Similarity=0.009 Sum_probs=114.9
Q ss_pred hcCCChHHHHHHHHHHH--------HhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHc
Q 004856 446 VNIGALEHVKYLHGYSM--------KLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKH 516 (727)
Q Consensus 446 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 516 (727)
...|++++|...++.+. +.. +.+...+..+...|.+.|++++|...|++.....| +...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56777777777777766 221 33445666666677777777777777776443333 556677777777777
Q ss_pred CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARE 595 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 595 (727)
|++++|++.|++..+. .| +...+..+..++...|++++ +..|+++.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777663 34 45566677777777777777 7777776653 12235566677777777777777777
Q ss_pred HHHhC-CCCCCH-hhHHHHHHHHHHcCC-----HHHHHHHHHHHHccCCCCcch
Q 004856 596 LVKDM-PFKPDA-RVWGPLLSACKMHSE-----TELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 596 ~~~~~-~~~p~~-~~~~~ll~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.++++ ...|+. ..|..+..++...++ .+...+..+....+.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 77776 455543 345445444444333 233344444444455544443
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=5.9e-09 Score=91.39 Aligned_cols=123 Identities=12% Similarity=0.024 Sum_probs=101.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHS 620 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 620 (727)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4455567788999999988776 33454 446678899999999999999999988 5566 5668888888899999
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM-RTFLRDR 669 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 669 (727)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 4666554
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=6.7e-08 Score=95.15 Aligned_cols=172 Identities=11% Similarity=-0.009 Sum_probs=134.4
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
....+.... +.+...+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++.+...
T Consensus 105 l~~~l~~~l--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 105 IRALLDXVL--PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHS--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHc--CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 334444433 334556677788888999999999999999884 56 5678888999999999999999999988743
Q ss_pred cCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--cch
Q 004856 568 YGYEPSQEHYAS-MVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN--AGN 642 (727)
Q Consensus 568 ~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 642 (727)
.|+...... ....+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 565443322 233466777788888888776 4455 55678888888999999999999999999999987 788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 643 YVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 643 ~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887653
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=8.3e-08 Score=89.40 Aligned_cols=124 Identities=14% Similarity=0.137 Sum_probs=97.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGR 586 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 586 (727)
+..+|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+++.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 888999999999999999999984 56 5778999999999999999999999999865 45 46788888888876
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 587 AGH--MDEARELVKDMPFKPDA--RVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 587 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
.|+ .+.+...+.+.. .|+. ..+..+..++...|++++|+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 445666666653 3443 34444455577789999999999999999995
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=2.9e-08 Score=89.77 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-H
Q 004856 507 NSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL-L 584 (727)
Q Consensus 507 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~ 584 (727)
..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...++.+... .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 34445556666666666666666552 34 3455666666666666666666666665533 2333222221111 1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--cchHHHHHHHHHhcCChhHHH
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN--AGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~ 660 (727)
...+...+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. ..++..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1212223355566555 3455 45677777778899999999999999999998864 558889999999999999999
Q ss_pred HHHHHHH
Q 004856 661 KMRTFLR 667 (727)
Q Consensus 661 ~~~~~m~ 667 (727)
..+++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.4e-07 Score=85.44 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=136.3
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC----CHHHHHHHHHHh
Q 004856 489 AGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG----LVEEGRIIFKEM 564 (727)
Q Consensus 489 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~ 564 (727)
|...|++... .-+...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|++.
T Consensus 5 A~~~~~~aa~-~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAE-AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4444444332 3567778888888888899999999999988865 56677777777777 6 899999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004856 565 KESYGYEPSQEHYASMVNLLGR----AGHMDEARELVKDM-PFKPD---ARVWGPLLSACKM----HSETELAELTAEKL 632 (727)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~A~~~~~~~ 632 (727)
.+. + +...+..|...|.. .+++++|.+++++. ...|. ...+..|...|.. .++.++|+..++++
T Consensus 80 ~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 764 3 56677788888877 88999999999988 33443 6778888888877 78999999999999
Q ss_pred HccCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 004856 633 ISMEPENAGNYVLLSNIYAAA-G-----KWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 633 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 671 (727)
.+. |.++.++..|+.+|... | +.++|.+++++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 66788899999998765 3 89999999999887763
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=4.8e-08 Score=82.48 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=65.4
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 004856 534 VRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWG 610 (727)
Q Consensus 534 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 610 (727)
+.|+ ...+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4453 345566666666666666666666666643 1223555666666666666666666666655 3333 334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHH
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSN 648 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 648 (727)
.+..++...|++++|+..++++++++|++..++..|..
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555666666666666666666666666655555544
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=4.6e-08 Score=85.20 Aligned_cols=100 Identities=6% Similarity=-0.040 Sum_probs=78.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 570 YEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 570 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3444 446666777777778888888777776 3445 456777777778888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.+|...|++++|...+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888887665
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=1e-07 Score=94.86 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=145.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHH
Q 004856 413 HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGEL 492 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 492 (727)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4566777777776654211 00 0 11135666666655443 3456677777777777
Q ss_pred HHhccCC-----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hHHHHHHHHHHHhcCCHHHHHHH
Q 004856 493 FDEEKID-----SK--DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDV---RPD--LITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 493 ~~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
|.+.... .+ -...|+.+...|...|++++|+..|++..+.-. .|. ..++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7753211 11 134778888889999999999999988765210 122 3567788888888 999999999
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HhhHHHHHHHHHHcCCHHHHHHH
Q 004856 561 FKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-PF---KPD----ARVWGPLLSACKMHSETELAELT 628 (727)
Q Consensus 561 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~A~~~ 628 (727)
|++..+.+.-..+ ..++..+...|.+.|++++|++.+++. .+ .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754211111 457888899999999999999999887 11 111 12455555667778999999999
Q ss_pred HHHHHccCCCCcch-----HHHHHHHHHhcCChhHHHHH
Q 004856 629 AEKLISMEPENAGN-----YVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 629 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 662 (727)
+++++ +.|..... ...++.++ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88865433 33455555 56777666553
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=1.2e-07 Score=103.60 Aligned_cols=151 Identities=17% Similarity=0.105 Sum_probs=118.2
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 004856 516 HGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 593 (727)
.|++++|++.|++..+. .| +...+..+...+...|++++|...+++..+. .|+ ...+..+...|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999999874 56 5788999999999999999999999999853 454 77899999999999999999
Q ss_pred HHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 004856 594 RELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA---GKWNGVAKMRTFLRD 668 (727)
Q Consensus 594 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 668 (727)
.+.+++. ...| +...|..+...+...|++++|...++++++++|++..++..++.++... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999988 4445 4568888888899999999999999999999999999999999999999 999999999999877
Q ss_pred CCC
Q 004856 669 RGL 671 (727)
Q Consensus 669 ~~~ 671 (727)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 654
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=9.5e-08 Score=80.62 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 570 YEPS-QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 570 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345666777777777777777777776 3444 455666666677777777777777777777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777776554
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.6e-07 Score=102.86 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=119.5
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 004856 411 VTHDQSLEALRLFSEMK--------LEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK 482 (727)
Q Consensus 411 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 482 (727)
...|++++|++.|++.. .. -..+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777777777777776 22 12234556666667777777777777777777654 3455666667777777
Q ss_pred cCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHH
Q 004856 483 CGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRII 560 (727)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 560 (727)
.|++++|...|++.....| +...|..+..+|.+.|++++ ++.|++..+. .| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777443334 55677777777777777777 7777777763 45 456677777777777777777777
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 004856 561 FKEMKESYGYEPS-QEHYASMVNLLGRAGH--------MDEARELVKDM 600 (727)
Q Consensus 561 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~~ 600 (727)
|+++. .+.|+ ...+..+..++...|+ +++|.+.+..+
T Consensus 557 ~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 77766 34555 4466666666655443 55566666555
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=1.8e-05 Score=83.85 Aligned_cols=205 Identities=14% Similarity=0.050 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHH-HHHHHh
Q 004856 417 LEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMA-GELFDE 495 (727)
Q Consensus 417 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 495 (727)
+.+..+|+++.... +.+...+...+.-+.+.|+.+.|..+++..... +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 44667888877653 334566666677777888999999999998888 434333332 2222111111 112211
Q ss_pred ccCC----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHh
Q 004856 496 EKID----------SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVN-AGLVEEGRIIFKEM 564 (727)
Q Consensus 496 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~ 564 (727)
.... ......|...+..+.+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1000 012356777777777888899999999999 321 1244444432222222 33699999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 565 KESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 565 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
.+.++ -+...+...++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..+++++.+
T Consensus 347 l~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98643 234566778888889999999999999983 3567898888888889999999998888875
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=1.9e-06 Score=84.34 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-----
Q 004856 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE--EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH----- 589 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----- 589 (727)
+++++++++++++.+.. +-|..+|..-..++.+.|.++ ++++.++.+.+. -+-|...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 45555555555555532 224555555555555555555 555555555543 12233444444444444443
Q ss_pred -HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCC-HHHHHHHHHHHHccC---CCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 590 -MDEARELVKDM-PFKP-DARVWGPLLSACKMHSE-TELAELTAEKLISME---PENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 590 -~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
++++++.++++ ...| |...|+-+...+.+.|+ .+.....++++.+++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2233 44455555555555554 233444555555544 55555566666666666666666666
Q ss_pred HHHHHh
Q 004856 663 RTFLRD 668 (727)
Q Consensus 663 ~~~m~~ 668 (727)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=5.4e-07 Score=83.79 Aligned_cols=188 Identities=11% Similarity=0.046 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 004856 402 SWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA 481 (727)
Q Consensus 402 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 481 (727)
.+-.....+...|++++|+..|++.... .|+........ . .. ............+...|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~--------------~~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VD--------------KNSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SC--------------TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hc--------------chhhhhHHHHHHHHHHHH
Confidence 3344556677889999999999988774 34432211110 0 00 001112233345778889
Q ss_pred hcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC--HHHH
Q 004856 482 KCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGL--VEEG 557 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~--~~~a 557 (727)
+.|++++|...|++.....| +...|..+...|...|++++|+..|++.++ +.| +..++..+..++...|. .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999998544345 678899999999999999999999999998 456 57788888888766554 3444
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHH
Q 004856 558 RIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLS 614 (727)
Q Consensus 558 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 614 (727)
...++... ...|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55555443 22333334445566777789999999999987 67888665554433
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=4.5e-07 Score=85.61 Aligned_cols=186 Identities=11% Similarity=-0.027 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-c-hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH----HHHHH
Q 004856 435 FVTIINILPACVNIGALEHVKYLHGYSMKLGLN-S-LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI----ITWNS 508 (727)
Q Consensus 435 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 508 (727)
...+......+...|++++|...++.+.+.... + ....+..+..+|.+.|++++|...|++.....|+. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556667788999999999999999986432 2 24577788899999999999999999965434532 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 509 MISAYAK------------------HGDWSQCFKLYTQMKQSDVRPDLI-TFLGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 509 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
+..++.. .|++++|+..|+++++. .|+.. ........ ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH----
Confidence 5555554 57899999999999984 56533 22221110 00111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc
Q 004856 570 YEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPENAG 641 (727)
Q Consensus 570 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 641 (727)
.....+...|.+.|++++|...++++ ...|+. ..+..+..++.+.|+.++|+..++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12234677888899999999999887 333432 45777778899999999999999999888887654
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=8.1e-07 Score=87.31 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHH-HHHHHcC
Q 004856 439 INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMI-SAYAKHG 517 (727)
Q Consensus 439 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li-~~~~~~g 517 (727)
..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...+++.....|+........ ..+...+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 333444444555555555555444433 23344555566666777777777777776554455543332222 2345556
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS---QEHYASMVNLLGRAGHMDEA 593 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A 593 (727)
+.++|++.+++..+. .| +...+..+..++...|++++|...++++.+. .|+ ...+..++..|...|+.++|
T Consensus 200 ~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 200 ADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp TSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcH
Confidence 666667777766663 34 4556666677777777777777777776654 232 44566666666666666666
Q ss_pred HHHHHh
Q 004856 594 RELVKD 599 (727)
Q Consensus 594 ~~~~~~ 599 (727)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=2e-07 Score=84.15 Aligned_cols=156 Identities=8% Similarity=-0.033 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhc
Q 004856 474 TAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-CVNA 551 (727)
Q Consensus 474 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~ 551 (727)
..+...+.+.|++++|...|++.....| +...|..+...+...|++++|+..+++.... .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3455667788888899888888554334 5678888888888999999999999888763 3444333222211 1222
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGYEP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD---ARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~A~ 626 (727)
+...+|...+++..+. .| +...+..+...+...|++++|...++++ ...|+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233467788887754 44 4678888888999999999999998887 55554 447788888888899999999
Q ss_pred HHHHHHHc
Q 004856 627 LTAEKLIS 634 (727)
Q Consensus 627 ~~~~~~~~ 634 (727)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=1.5e-07 Score=93.72 Aligned_cols=196 Identities=11% Similarity=-0.022 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 004856 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYT 527 (727)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 527 (727)
.|++++|..+++...+..-. . .+...+++++|...|.+ ....|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHH
Confidence 45677888888777653211 0 11114777777777765 3567888999999999999
Q ss_pred HHHHCCC---CC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 528 QMKQSDV---RP-D-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGY--EPS--QEHYASMVNLLGRAGHMDEARELVK 598 (727)
Q Consensus 528 ~m~~~g~---~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 598 (727)
+..+... .+ . ..+|..+..+|...|++++|+..+++..+.+.- .+. ..++..+...|.+ |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8875311 11 1 457888999999999999999999987654211 121 4578889999988 99999999998
Q ss_pred hC-CCCC---C----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc------chHHHHHHHHHhcCChhHHHHHHH
Q 004856 599 DM-PFKP---D----ARVWGPLLSACKMHSETELAELTAEKLISMEPENA------GNYVLLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 599 ~~-~~~p---~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 664 (727)
+. .+.| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 1111 1 34677778889999999999999999999766443 266677888899999999999999
Q ss_pred HHH
Q 004856 665 FLR 667 (727)
Q Consensus 665 ~m~ 667 (727)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=1e-06 Score=82.21 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|...++...+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3444455555666666666666554 2445555556666666666666666666655543 122234444445555
Q ss_pred HhcCCHHHHHHHHHhC
Q 004856 585 GRAGHMDEARELVKDM 600 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~ 600 (727)
.+.|++++|.+.+++.
T Consensus 82 ~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHH
Confidence 5555555555444443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=2.5e-06 Score=79.46 Aligned_cols=145 Identities=13% Similarity=-0.041 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG 552 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 552 (727)
+..+...+...|++++|...|++.. .|+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 4455667889999999999999986 7788999999999999999999999999999853 336778999999999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPD-ARVWGPLLSACKMHSETELAELTAEK 631 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 631 (727)
++++|...++...+. .|+..... +...|. ...|+ ...|..+...+...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~---~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ---LRGNQLID-----YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHT---TTTCSEEE-----CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh---CCCccHHH-----HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999864 22211000 000000 12232 23444555556666666666666666
Q ss_pred HHccCCCC
Q 004856 632 LISMEPEN 639 (727)
Q Consensus 632 ~~~~~p~~ 639 (727)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 66666644
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=5.6e-06 Score=81.65 Aligned_cols=161 Identities=9% Similarity=-0.012 Sum_probs=113.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCChH----HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 004856 508 SMISAYAKHGDWSQCFKLYTQMKQSDV-RPDLI----TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYA 578 (727)
Q Consensus 508 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 578 (727)
..+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...++.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888776321 12211 2334556666677888888888888763111222 23678
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-----C--C-CCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchH
Q 004856 579 SMVNLLGRAGHMDEARELVKDMP-----F--K-PDA-RVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNY 643 (727)
Q Consensus 579 ~li~~~~~~g~~~~A~~~~~~~~-----~--~-p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 643 (727)
.+...|...|++++|...++++- . . +.. .++..+...|...|++++|+..+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88888888888888888887761 1 1 122 366777778999999999999999998865332 5678
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHh
Q 004856 644 VLLSNIYAAAGK-WNGVAKMRTFLRD 668 (727)
Q Consensus 644 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 668 (727)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887653
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=1.5e-07 Score=92.19 Aligned_cols=192 Identities=7% Similarity=-0.038 Sum_probs=132.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 004856 470 SSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTA 547 (727)
Q Consensus 470 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 547 (727)
...+..+...+.+.|++++|...|++.....| +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44556667778888888888888887543344 7788889999999999999999999999874 55 57788889999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAE 626 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 626 (727)
+...|++++|...|+...+. .|+. ..+...+....+..+...... .......++...... +..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-l~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSY-LTRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHH-HHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH-HHHHH-HHHHHHHH
Confidence 99999999999999988754 2321 111112222222111111111 222233333333333 33333 68899999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 004856 627 LTAEKLISMEPENAGNYVLLSNIYAAA-GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 627 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 669 (727)
+.++++++++|++......+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7789999999887653
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=2e-06 Score=84.90 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCCC--
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDL------ITFLGLLTACVNAGLVEEGRIIFKEMKESYG--YEPS-- 573 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~-- 573 (727)
..+...+..+...|++++|++.+++..+..- .+. ..+..+...+...|++++|...+++..+... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445566677788888888888887776431 121 1233455566777888888888887764311 1111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM----PFKPD-----ARVWGPLLSACKMHSETELAELTAEKLISMEPE------ 638 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------ 638 (727)
..+++.+...|...|++++|...++++ ...|+ ..++..+...|...|++++|+..+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347778888888888888888888776 11222 146777777799999999999999998875432
Q ss_pred CcchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 004856 639 NAGNYVLLSNIYAAAGKWNGV-AKMRTFLR 667 (727)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 667 (727)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146788999999999999999 77677654
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=2e-07 Score=81.25 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445566667777777777777777766 3344 45566667777788888888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 004856 652 AAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 652 ~~g~~~~a~~~~~~m~~~ 669 (727)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888776554
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=1.3e-06 Score=77.48 Aligned_cols=127 Identities=8% Similarity=-0.033 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555555666666666666665543 1223555566666666666666666666655 2233 4456667777788
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHh
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSN--IYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 668 (727)
..|++++|...++++++..|.+...+..+.. .+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8889999999999999998888877754444 47788999999998887643
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=4.3e-05 Score=74.70 Aligned_cols=228 Identities=8% Similarity=-0.055 Sum_probs=160.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCchHhHHHHHHHHH----Hhc---C
Q 004856 415 QSLEALRLFSEMKLEGVEVDFVT-IINILPACVNIG--ALEHVKYLHGYSMKLGLNSLSSVNTAIFISY----AKC---G 484 (727)
Q Consensus 415 ~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g 484 (727)
..++|++++++++.. .|+..| ++.--.++...+ .++++..+++.+.... +.+..+++.--..+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 335677777666653 444433 344444455555 6777777777666654 22333333322222 334 6
Q ss_pred CHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC------HH
Q 004856 485 CIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWS--QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL------VE 555 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~~ 555 (727)
+++++..+++++... +.+..+|+--.-.+.+.|+++ ++++.++++++.. .-|...|+.......+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 788888888885543 458889998888888889888 9999999999854 3377788877777777776 89
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE-ARELVKDM-PF----KPDARVWGPLLSACKMHSETELAELTA 629 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~A~~~~ 629 (727)
++++.++.+... .+-|...|+.+...+.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|++++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998865 34457788888888888887444 55677766 22 236678888888899999999999999
Q ss_pred HHHHc-cCCCCcchHHHHHH
Q 004856 630 EKLIS-MEPENAGNYVLLSN 648 (727)
Q Consensus 630 ~~~~~-~~p~~~~~~~~l~~ 648 (727)
+.+.+ .+|.....+...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 79977766665543
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=6.4e-06 Score=76.69 Aligned_cols=160 Identities=9% Similarity=-0.045 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCchHhHHH
Q 004856 399 TVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIG----ALEHVKYLHGYSMKLGLNSLSSVNT 474 (727)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (727)
++.++..|...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|..++....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555556666666666666666666666544 33444444444554 4 5666666666665544 334445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccCCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004856 475 AIFISYAK----CGCIEMAGELFDEEKIDSKD---IITWNSMISAYAK----HGDWSQCFKLYTQMKQSDVRPDLITFLG 543 (727)
Q Consensus 475 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (727)
.|..+|.. .+++++|...|++.....++ ...+..|...|.. .+++++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55555555 66777777777775543332 5667777777776 66778888888777764 234455666
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHhHHh
Q 004856 544 LLTACVNA-G-----LVEEGRIIFKEMKES 567 (727)
Q Consensus 544 ll~~~~~~-g-----~~~~a~~~~~~~~~~ 567 (727)
|...|... | +.++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666543 2 677777777777765
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.7e-06 Score=72.29 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSAC 616 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 616 (727)
..+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++ ...| +...|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555555666666666666655543 1223445555666666666666666666555 2222 445666777778
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
...|++++|...++++++..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888887776554
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=2.4e-06 Score=81.59 Aligned_cols=183 Identities=11% Similarity=-0.029 Sum_probs=114.3
Q ss_pred hcCCHHHHHHHHHhccCCCC-CHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCh---------------
Q 004856 482 KCGCIEMAGELFDEEKIDSK-DIITWNSM-------ISAYAKHGDWSQCFKLYTQMKQSDVRPDL--------------- 538 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 538 (727)
..++.+.|.+.|.+.....| ....|+.+ ...+...++..+++..+.+-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45777777777777554444 45677766 4555555555555555555443 22321
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----h
Q 004856 539 -------ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDA----R 607 (727)
Q Consensus 539 -------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 607 (727)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233556667777888888777766632 344335555666777778888888888766333322 2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISME--PE-NAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45555666777888888888888776532 43 3346667777788888888888888777665
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=2.1e-05 Score=77.50 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=120.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCC---CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hHHHH
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDSK---DI----ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR-PD----LITFL 542 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 542 (727)
..+..+...|++++|...+++.....+ +. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678899999999999998654332 21 12334666667778999999999999884322 23 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HhhH
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESY----GYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-------PFKPD-ARVW 609 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 609 (727)
.+..+|...|++++|..+++++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999987421 11222 347888999999999999999999876 11222 4577
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHcc
Q 004856 610 GPLLSACKMHS-ETELAELTAEKLISM 635 (727)
Q Consensus 610 ~~ll~~~~~~g-~~~~A~~~~~~~~~~ 635 (727)
..+...+...| ++++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 77778899999 579999999998863
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=1.8e-06 Score=72.86 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 344555555666666666666666666543 1224455666666666666666666666655 2233 34566667777
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCCh
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKW 656 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 656 (727)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888999999999999999998888888888888888875
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=1.6e-05 Score=84.33 Aligned_cols=374 Identities=9% Similarity=-0.038 Sum_probs=215.1
Q ss_pred ccC-ChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCC--CCeehHHHHHHHHHhcCC-chHHHH
Q 004856 245 ELK-SLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSD--KDRVVWNIMISAYYQSGF-PKESLE 320 (727)
Q Consensus 245 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 320 (727)
+.| ++..|+.+|+.++..-+. |+.+.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~----------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS----------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC----------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 477888888887765311 889999999998765 678888888877776663 455677
Q ss_pred HHHHHHHc-CCCC-ChhhHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 004856 321 LLMCMVRS-GFRA-DLFTAIAAVSSIST----MKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDS 394 (727)
Q Consensus 321 ~~~~m~~~-g~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (727)
+|+..... |..| +...|...+..+.. .++.+.+..+|+.+++.....-..+|......-. ......+.++..+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHH
Confidence 77776653 4334 44555555555432 3467778888888886321111122222221111 1112222222211
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC--CC-----hHHHHHHHHHHHHhCCC
Q 004856 395 VKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI--GA-----LEHVKYLHGYSMKLGLN 467 (727)
Q Consensus 395 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~-----~~~a~~~~~~~~~~~~~ 467 (727)
. .+.+..|..+++++...--..+...+...+.--... +. .+.+..+++.++... +
T Consensus 149 ---------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 ---------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp ---------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred ---------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 1 112333344443333210001222333333322111 11 344666788877754 4
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC-
Q 004856 468 SLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDI-ITWNSMISAYAKHGDWSQCFKLYTQMKQSD---------VRP- 536 (727)
Q Consensus 468 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p- 536 (727)
.....|-..+..+.+.|+.+.|..+|++.... |.. ..|. .|+...+.++. ++.+.+.- ..+
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 55777877888888999999999999985544 543 3333 23322222222 22222210 011
Q ss_pred --ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHhhHHH
Q 004856 537 --DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-HMDEARELVKDM--PFKPDARVWGP 611 (727)
Q Consensus 537 --~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ 611 (727)
....|...+....+.+..+.|..+|+.+ .. . ..+..+|...+..-.+.| +.+.|.++|+.. ....++..|..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 1245666677777788899999999998 32 1 234555654444444444 699999999877 22223445777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 612 LLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+......|+.+.|..+++++. .....+...+..-...|+.+.+..++++..+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788999999999999972 3456677777777778999999998887764
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=9.5e-07 Score=88.96 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777788888888888888888776 3344 55677788888999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHH
Q 004856 652 AAGKWNGV-AKMRTFLR 667 (727)
Q Consensus 652 ~~g~~~~a-~~~~~~m~ 667 (727)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44555553
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=1.7e-06 Score=73.43 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.++++ ...| +...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444455555555555444421 1113344445555555555555555555544 2222 3445666666677
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCC
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGK 655 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 655 (727)
..|++++|+..++++++.+|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888887776653
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.46 E-value=5.1e-07 Score=78.60 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=79.0
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 004856 526 YTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFK 603 (727)
Q Consensus 526 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 603 (727)
|+++.. +.| +...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.+++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 344 3445666677777777777777777777654 2234666777777777778888888777776 334
Q ss_pred C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 604 P-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 604 p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
| +...|..+..++...|++++|+..+++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 4 445666777778888888888888888888888766553
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=2.2e-06 Score=81.76 Aligned_cols=137 Identities=10% Similarity=-0.043 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNL 583 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~ 583 (727)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566777888888888888887763 365445556666788888888888888755421 1 121 2366777888
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 584 LGRAGHMDEARELVKDMP---FKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+.+.|++++|++.|++.. ..|. ...+.....++.+.|+.++|...++++.+.+|+ +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 888888888888888872 1143 235566666788999999999999999999996 55555443
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.4e-06 Score=73.35 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666666777777777777665 3334 445666666677778888888888888888888777888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 004856 653 AGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888887776654
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=1.6e-06 Score=75.42 Aligned_cols=105 Identities=11% Similarity=0.020 Sum_probs=85.7
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 004856 534 VRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWG 610 (727)
Q Consensus 534 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 610 (727)
+.|+ ...+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|+++ .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4563 557788888889999999999999998864 2334778888999999999999999999888 4555 456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888889999999999999999999998643
No 137
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.8e-06 Score=74.51 Aligned_cols=95 Identities=16% Similarity=0.033 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34555666666777777777777665 3344 445666666677788888888888888888888888888888888888
Q ss_pred cCChhHHHHHHHHHHhC
Q 004856 653 AGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|.+.+++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888776554
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=2.7e-06 Score=76.58 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=63.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNL-LGRAGHM-- 590 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 590 (727)
...|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34566666666666666532 224556666666666666666666666666543 12234445555555 4455555
Q ss_pred HHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 591 DEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 591 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
++|...++++ ...| +...|..+...+...|++++|...++++++..|++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 5555555554 2223 233444444445555555555555555555555443
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=1.1e-05 Score=79.50 Aligned_cols=164 Identities=10% Similarity=-0.025 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hH
Q 004856 472 VNTAIFISYAKCGCIEMAGELFDEEKIDSK-DI------ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVR---PD--LI 539 (727)
Q Consensus 472 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 539 (727)
.+...+..+...|++++|.+.+.+.....+ .. ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778889999999998876332222 11 22344556677788999999999998753211 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-CH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS-----QEHYASMVNLLGRAGHMDEARELVKDM-PF------KP-DA 606 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 606 (727)
+|+.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|.+.+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988732111222 257888999999999999999999876 11 11 14
Q ss_pred hhHHHHHHHHHHcCCHHHH-HHHHHHHHcc
Q 004856 607 RVWGPLLSACKMHSETELA-ELTAEKLISM 635 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A-~~~~~~~~~~ 635 (727)
.+|..+...+...|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5677777789999999999 7778888763
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=1.6e-06 Score=74.87 Aligned_cols=107 Identities=11% Similarity=-0.013 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 344555666666777777777777776653 1234556666777777777777777777666 3334 34456666666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
+...|++++|+..+++++++.|+++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 7888888888888888888888766655443
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=6.2e-05 Score=74.38 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=114.7
Q ss_pred HhcC-CHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH-
Q 004856 481 AKCG-CIEMAGELFDEEKIDS-KDIITWNSMISAYAKH-G-DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVE- 555 (727)
Q Consensus 481 ~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~- 555 (727)
...| .+++++..++.+.... .+..+|+.-...+.+. + ++++++++++++.+.. +-|...|+.-..++.+.|.++
T Consensus 99 ~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 99 TSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 3344 3666666666543323 3566777766666655 5 7777777777777642 225666666555555555555
Q ss_pred -------HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc
Q 004856 556 -------EGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGH-------MDEARELVKDM-PFKP-DARVWGPLLSACKMH 619 (727)
Q Consensus 556 -------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 619 (727)
++++.++++.+. .+-|...|+....++.+.+. +++++++++++ ...| |...|+-+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777764 23355667766666666665 57777777666 3444 556777766666665
Q ss_pred CCH--------------------HHHHHHHHHHHccC------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 620 SET--------------------ELAELTAEKLISME------PENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 g~~--------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|+. .........+.... +..+.+...|+++|...|+.++|.++++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 543 22222322222222 345667789999999999999999999998654
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=4.4e-06 Score=75.21 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=69.6
Q ss_pred HhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCH--HH
Q 004856 481 AKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTA-CVNAGLV--EE 556 (727)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~ 556 (727)
...|++++|...+++.....| +...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666666666665322223 55666666666777777777777777666532 2245555566666 5566666 77
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004856 557 GRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPD 605 (727)
Q Consensus 557 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 605 (727)
|...++.+.+. .+.+...+..+...|...|++++|...++++ ...|+
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 77777666654 1223456666666677777777777766665 33443
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=1.4e-06 Score=72.78 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAA 653 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 653 (727)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667777888888888888877 4445 5567777777788899999999999999999999899999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 004856 654 GKWNGVAKMRTFLRDR 669 (727)
Q Consensus 654 g~~~~a~~~~~~m~~~ 669 (727)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887654
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=9.1e-06 Score=70.33 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHH
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWG 610 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 610 (727)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666666666777777776666663 3444 345555666666666666666666554 2233 334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 611 PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 611 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
.+...+...|++++|...++++++++|++..++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555556666666666666666666666555555444443
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=1.3e-05 Score=73.73 Aligned_cols=84 Identities=11% Similarity=-0.000 Sum_probs=38.3
Q ss_pred hcCCHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHH
Q 004856 482 KCGCIEMAGELFDEEKID-SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQS----DVRP-DLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~ 555 (727)
..|++++|.+.++.+... ......+..+...+...|++++|+..+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345666666622222211 123345555555555666666666655555431 1111 1234444555555555555
Q ss_pred HHHHHHHHhH
Q 004856 556 EGRIIFKEMK 565 (727)
Q Consensus 556 ~a~~~~~~~~ 565 (727)
+|...+++..
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=3.5e-06 Score=68.76 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE--NAGNYVLLSNI 649 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 649 (727)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777777777777777777766 2233 4556777777788888888888888888888888 88888888888
Q ss_pred HHhc-CChhHHHHHHHHHHhCC
Q 004856 650 YAAA-GKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 650 ~~~~-g~~~~a~~~~~~m~~~~ 670 (727)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 89999988888876654
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=1.3e-05 Score=65.96 Aligned_cols=108 Identities=16% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555555555555555555543 1223444555555555555555555555544 2223 3445555666677
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
..|++++|...++++++.+|+++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666666655544
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=2.5e-06 Score=71.94 Aligned_cols=94 Identities=7% Similarity=0.005 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-------hHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAG-------NYVLL 646 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l 646 (727)
.+..+...+.+.|++++|++.|+++ .+.| +...|..+..++...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566777888888888888888776 4455 4556777777788999999999999999988876543 56678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 004856 647 SNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 647 ~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++...|++++|++.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999876553
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=6.6e-06 Score=70.26 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555666666666666666666554 2233 3445666666677777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 7777777777777766554
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=5.9e-06 Score=69.42 Aligned_cols=108 Identities=12% Similarity=-0.054 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACK 617 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 617 (727)
.+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555555555555555555543 1223445555555666666666666655554 2333 3445566666677
Q ss_pred HcCCHHHHHHHHHHHHccC------CCCcchHHHHHHH
Q 004856 618 MHSETELAELTAEKLISME------PENAGNYVLLSNI 649 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 649 (727)
..|++++|+..++++++++ |.+......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7777777777777777777 6555555555444
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=7.1e-06 Score=75.58 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=40.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccC------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKI------DSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQS----DVRP- 536 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 536 (727)
....+..+...|...|++++|...+++... ..+ ....+..+...|...|++++|++.+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 334444444455555555555555544211 001 1233444444555555555555555444331 0011
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004856 537 -DLITFLGLLTACVNAGLVEEGRIIFKEM 564 (727)
Q Consensus 537 -~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 564 (727)
....+..+...+...|++++|...+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0122444444444445555554444444
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=9.5e-06 Score=79.31 Aligned_cols=186 Identities=8% Similarity=-0.057 Sum_probs=112.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCC
Q 004856 440 NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGD 518 (727)
Q Consensus 440 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 518 (727)
.+...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...+++.....| +...|..+..+|...|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444444432 33455666777778888888888888888555445 67788899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 004856 519 WSQCFKLYTQMKQSDVRPDL-ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELV 597 (727)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 597 (727)
+++|+..|++..+. .|+. ..+...+...... .++... ...... ....+......+...+ .|+.++|.+.+
T Consensus 88 ~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 88 YDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 99999999998873 3421 1111112211111 111221 222222 4455555555554433 68899999988
Q ss_pred HhC-CCCCCHhhHHHHHHH-HHHc-CCHHHHHHHHHHHHcc
Q 004856 598 KDM-PFKPDARVWGPLLSA-CKMH-SETELAELTAEKLISM 635 (727)
Q Consensus 598 ~~~-~~~p~~~~~~~ll~~-~~~~-g~~~~A~~~~~~~~~~ 635 (727)
++. ...|+......-+.. +... +.+++|..+|+++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 877 567765433333333 4444 6788999999988763
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=4.2e-06 Score=74.24 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHH
Q 004856 537 DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLS 614 (727)
Q Consensus 537 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 614 (727)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888999999999999999998865 2335778888999999999999999999887 4455 4567788888
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 615 ACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 615 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.+...|++++|+..++++++++|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 899999999999999999999998888665544
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=8e-06 Score=72.42 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASM 580 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 580 (727)
+...|..+...+.+.|++++|++.|++.++. .| +...|..+..++...|++++|+..+++..+. .+.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 5667888889999999999999999999884 45 6778889999999999999999999999865 23347788899
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 004856 581 VNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~ 600 (727)
..+|.+.|++++|.+.|++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999887
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=1.2e-05 Score=66.25 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=86.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999988 3344 5667888888899999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 004856 651 AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 651 ~~~g~~~~a~~~~~~m~~~ 669 (727)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988765
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=1.3e-05 Score=70.84 Aligned_cols=127 Identities=15% Similarity=0.034 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 44445555555566666666665555531 223455555555555666666666666555543 122344555555566
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHH--HHHHHcCCHHHHHHHHHHHHc
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLL--SACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~ 634 (727)
.+.|++++|.+.++++ ...| +...+..+. ..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666554 2222 222332222 224455666666666665543
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=7.2e-06 Score=75.38 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
..+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++++++|++..++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 46666777777788888888777766 3334 455777777788999999999999999999999999999999999998
Q ss_pred cCChhHHH-HHHHHHHhC
Q 004856 653 AGKWNGVA-KMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~-~~~~~m~~~ 669 (727)
.|+.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888777 455555443
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.5e-05 Score=68.96 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhH
Q 004856 501 KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEH 576 (727)
Q Consensus 501 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 576 (727)
.+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 3566777777778888888888888888776 3465 566777777778888888888888877754 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 004856 577 YASMVNLLGRAGHMDEARELVKDM-PFKPD 605 (727)
Q Consensus 577 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 605 (727)
+..+..+|...|++++|.+.+++. ...|+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 777777888888888888888776 33443
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=4.9e-06 Score=71.50 Aligned_cols=62 Identities=10% Similarity=-0.031 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCcchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISM-------EPENAGNY----VLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|+..+++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6777777778888888888888888887 88888888 88888888888888888888877553
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=3.8e-05 Score=63.85 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 004856 475 AIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL 553 (727)
Q Consensus 475 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 553 (727)
.+...+...|++++|...|++..... .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 33334444444444444444322111 133344444444444444444444444444421 1233344444444444444
Q ss_pred HHHHHHHHHHhH
Q 004856 554 VEEGRIIFKEMK 565 (727)
Q Consensus 554 ~~~a~~~~~~~~ 565 (727)
+++|...++++.
T Consensus 93 ~~~A~~~~~~~~ 104 (125)
T 1na0_A 93 YDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=1e-05 Score=71.60 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456666677888888888888888888888888888888888888888888888888877665
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.0003 Score=69.14 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=111.7
Q ss_pred HHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-HHHHHHHH
Q 004856 486 IEMAGELFDEEKID-SKDIITWNSMISAYAKHGD--WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL-VEEGRIIF 561 (727)
Q Consensus 486 ~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~ 561 (727)
++++..+++.+... +.+..+|+.-.-.+.+.++ +++++++++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555553322 3366777776666666663 677777777777743 2266677766666666676 57777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc------
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRA--------------GHMDEARELVKDM-PFKP-DARVWGPLLSACKMH------ 619 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 619 (727)
..+.+. .+-|...|+.....+.+. +.++++++++.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 777764 233455565555554443 3467777777766 3344 556676555554444
Q ss_pred -----CCHHHHHHHHHHHHccCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhC
Q 004856 620 -----SETELAELTAEKLISMEPENAGNYVLLSNIY---AAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 620 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~ 669 (727)
+.++++++.++++++++|++...+..++... ...|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3577888888888888887755554443322 2356667777777777654
No 163
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=4.5e-05 Score=64.36 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMV 581 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 581 (727)
...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|...++++.+. .+.+...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 344444555555555555555555555442 22 3444455555555555555555555555432 122344445555
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 004856 582 NLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~ 600 (727)
..+.+.|++++|.+.+++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5555555555555555544
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.15 E-value=0.0013 Score=64.96 Aligned_cols=233 Identities=12% Similarity=0.001 Sum_probs=155.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhc-C-
Q 004856 409 GYVTHDQSLEALRLFSEMKLEGVEVDFV-TIINILPACVNIG-ALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKC-G- 484 (727)
Q Consensus 409 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 484 (727)
...+.+..++|+++++++... .|+.. .++.--..+...+ .++++..+++.+.... +.+..+++.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334455556788888887764 45443 3344444445556 4778888887777655 44555565555555555 6
Q ss_pred CHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--
Q 004856 485 CIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWS--------QCFKLYTQMKQSDVRPDLITFLGLLTACVNAGL-- 553 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-- 553 (727)
+++++.++++++.... .|..+|+--.-.+.+.|+++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 7889999998866544 47788887766666666666 8999999999854 3377888888888877775
Q ss_pred -----HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC-----
Q 004856 554 -----VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM--------------------DEARELVKDM-PF----- 602 (727)
Q Consensus 554 -----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~----- 602 (727)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 78899998888864 234566777777777776653 3444555554 11
Q ss_pred --CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH-ccCCCCcchHHHHH
Q 004856 603 --KPDARVWGPLLSACKMHSETELAELTAEKLI-SMEPENAGNYVLLS 647 (727)
Q Consensus 603 --~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 647 (727)
.+....+..+...|...|+.++|..+++.+. +.+|-....+...+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2466678888888999999999999999987 57885554444433
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=1.5e-05 Score=67.12 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh-hHHHHHH
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ-EHYASMV 581 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 581 (727)
..+..+...+.+.|++++|++.|++.++ +.| +...|..+..+|...|++++|+..+++..+. .|+. ..+..+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHH
Confidence 3555666666666666666666666666 334 3555666666666666666666666665532 1110 0111111
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 004856 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP 637 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 637 (727)
.+|..+...+...|++++|+..++++++..|
T Consensus 84 -------------------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 84 -------------------------KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1334444556667777777777777776665
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=1.4e-05 Score=67.34 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchHHHHHHHHHh
Q 004856 581 VNLLGRAGHMDEARELVKDM-PFKPDA----RVWGPLLSACKMHSETELAELTAEKLISMEPEN---AGNYVLLSNIYAA 652 (727)
Q Consensus 581 i~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 652 (727)
...+.+.|++++|.+.+++. ...|+. ..+..+...+...|++++|+..++++++..|++ +.++..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444455555555555444 112221 234444444555566666666666666655555 4445556666666
Q ss_pred cCChhHHHHHHHHHHhC
Q 004856 653 AGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 653 ~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|...++.+.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666555443
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=2.9e-05 Score=82.06 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=70.4
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 004856 478 ISYAKCGCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVE 555 (727)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~ 555 (727)
..|.+.|++++|.+.|++.....| +...|..+..+|.+.|++++|++.+++..+. .| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 345667777777777776433233 4667777777777777777777777777763 34 4566667777777777777
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 004856 556 EGRIIFKEMKESYGYEPS-QEHYASMVNL--LGRAGHMDEARELVK 598 (727)
Q Consensus 556 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 598 (727)
+|.+.++++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776654 222 3344444444 666667777776666
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.12 E-value=2.2e-05 Score=66.85 Aligned_cols=99 Identities=7% Similarity=-0.100 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSA 615 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 615 (727)
...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ...| +...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 444445555555555555555555554433 1222444555555555555555555555544 2223 33455555555
Q ss_pred HHHcCCHHHHHHHHHHHHccCCC
Q 004856 616 CKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+...|++++|+..+++++++.|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 66666777777777777666654
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=2.4e-05 Score=82.34 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+... .... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 446666777777777777777777777662 2322100 0 00000 0000 01356677778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHH
Q 004856 583 LLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 660 (727)
+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776 3344 45677788888999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 004856 661 K-MRTFLRD 668 (727)
Q Consensus 661 ~-~~~~m~~ 668 (727)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4555543
No 170
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=4.1e-05 Score=64.23 Aligned_cols=113 Identities=11% Similarity=-0.014 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDS-KDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNA 551 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 551 (727)
+..+...+...|++++|...|++..... .+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 3334444444455555555544422112 234444555555555555555555555555421 11344444555555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 552 GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG 588 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 588 (727)
|++++|...++...+. .+.+...+..+..++.+.|
T Consensus 94 ~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHh
Confidence 5555555555555433 1112334444444444443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.0007 Score=66.53 Aligned_cols=194 Identities=9% Similarity=-0.014 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC-hHHHHHHH
Q 004856 451 LEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCG--CIEMAGELFDEEKID-SKDIITWNSMISAYAKHGD-WSQCFKLY 526 (727)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~~~ 526 (727)
++++..+++.+.... +.+..+++.-.-.+.+.| .++++..+++.+... ..|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666544 344555555445555666 478888888875543 4478888888777788888 58999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----
Q 004856 527 TQMKQSDVRPDLITFLGLLTACVNA--------------GLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRA----- 587 (727)
Q Consensus 527 ~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 587 (727)
+++++.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 9999853 23677777766666555 4578888888888864 233455666555555554
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHhhHHHHHHHH-----HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 004856 588 ------GHMDEARELVKDM-PFKPDARVWGPLLSAC-----KMHSETELAELTAEKLISMEPENAGNYVLLSNI 649 (727)
Q Consensus 588 ------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 649 (727)
+.++++++.++++ ...||. .|..+-.++ ...|..++....+.++++++|....-|..+..-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4578888888888 566765 565433332 246778899999999999999777776665443
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00011 Score=79.24 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhc
Q 004856 484 GCIEMAGELFDEEKIDSK-DIITWNSMISAYAKHGD----------WSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNA 551 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 551 (727)
..-++|.+.++.+....| +...|+.--..+...|+ ++++++.++++.+. .| +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344667787777544455 56788887777777777 89999999999984 45 678898888888999
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc-------
Q 004856 552 G--LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG-HMDEARELVKDM-PFKP-DARVWGPLLSACKMH------- 619 (727)
Q Consensus 552 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------- 619 (727)
+ ++++++..++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| +...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 779999999999975 2345778888888888888 899999999988 5556 667888888776553
Q ss_pred -------CCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhH
Q 004856 620 -------SETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNG 658 (727)
Q Consensus 620 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 658 (727)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=2e-05 Score=66.32 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HhhHHHH
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PF----KPD----ARVWGPL 612 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~l 612 (727)
..+...+...|++++|...++..... .+.+...+..+...|...|++++|...++++ .. .++ ...|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33334444444444444444444332 1122333444444444444444444444433 11 111 3345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHH
Q 004856 613 LSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIY 650 (727)
Q Consensus 613 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 650 (727)
...+...|++++|...++++++..| ++.....+..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 5566677777777777777777666 455555554443
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=4.1e-05 Score=76.88 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 504 ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 504 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
..|..+..+|.+.|++++|+..+++.++. .| +...|..+..++...|++++|+..|+++.+. .+.+...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 44555555555555555555555555542 23 3444555555555555555555555555432 1112334444444
Q ss_pred HHHhcCCHHHH
Q 004856 583 LLGRAGHMDEA 593 (727)
Q Consensus 583 ~~~~~g~~~~A 593 (727)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.3e-05 Score=65.21 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHc
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMH 619 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 619 (727)
..+...+...|++++|...++...+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+...+...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33444555556666666666555543 1223445555555556666666666665555 3334 334555555556666
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q 004856 620 SETELAELTAEKLISMEPEN 639 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~ 639 (727)
|++++|+..++++++.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 77777777777777766654
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=2.7e-05 Score=63.31 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHhhHHHHHHHH
Q 004856 541 FLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP---DARVWGPLLSAC 616 (727)
Q Consensus 541 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 616 (727)
+..+...+...|++++|...+++..+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444444444444444444444432 1122334444444455555555555554444 2222 234444455555
Q ss_pred HHc-CCHHHHHHHHHHHHccCCCC
Q 004856 617 KMH-SETELAELTAEKLISMEPEN 639 (727)
Q Consensus 617 ~~~-g~~~~A~~~~~~~~~~~p~~ 639 (727)
... |++++|++.++++++..|.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 555 66666666666666655543
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1e-05 Score=85.58 Aligned_cols=115 Identities=8% Similarity=-0.031 Sum_probs=70.4
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A 625 (727)
+...|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666665543 1223455566666666666666666666655 3334 344566666667777777777
Q ss_pred HHHHHHHHccCCCCcchHHHHHHH--HHhcCChhHHHHHHH
Q 004856 626 ELTAEKLISMEPENAGNYVLLSNI--YAAAGKWNGVAKMRT 664 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 664 (727)
+..++++++++|++..++..++.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777777777766 777777777777766
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=6.5e-05 Score=63.08 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhhHHHHHHH
Q 004856 544 LLTACVNAGLVEEGRIIFKEMKESYGYEPSQ---EHYASMVNLLGRAGHMDEARELVKDM-PFKPD----ARVWGPLLSA 615 (727)
Q Consensus 544 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 615 (727)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...+++. ...|+ ...+..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4445555666666666666665431 1112 35555666666666666666666655 22232 3345556666
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
+...|++++|+..++++++..|+++.+.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 77788888888888888888886665544433
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=3.1e-05 Score=78.81 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 004856 503 IITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEP-SQEHYASMV 581 (727)
Q Consensus 503 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 581 (727)
...|..+...+.+.|++++|++.|++.++. .|+.. .....+ ... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHH
Confidence 345666777777778888888777776651 11100 000111 111 1122 355788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHH
Q 004856 582 NLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGV 659 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 659 (727)
.+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887 5566 4567777888899999999999999999999999999999999999988888777
Q ss_pred HHH
Q 004856 660 AKM 662 (727)
Q Consensus 660 ~~~ 662 (727)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.2e-05 Score=69.16 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-------CCCCH-hhH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-P-------FKPDA-RVW----GPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-~-------~~p~~-~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.|..+..++.+.|++++|+..+++. . +.|+. ..| .....++...|++++|+..|+++++++|+|...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655554 3 37765 477 788888999999999999999999999988766
Q ss_pred HHHH
Q 004856 643 YVLL 646 (727)
Q Consensus 643 ~~~l 646 (727)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5433
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=2.4e-05 Score=68.68 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLISMEP------ENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
.+..+...+...|++++|...++++++..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445556666777777777776665421 1134566778888888888888888877654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=6.4e-06 Score=68.20 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHhC-CC---CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHH
Q 004856 588 GHMDEARELVKDM-PF---KPD-ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKM 662 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 662 (727)
|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555544 22 132 234444445555666666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 004856 663 RTFLRD 668 (727)
Q Consensus 663 ~~~m~~ 668 (727)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=4.8e-05 Score=79.66 Aligned_cols=189 Identities=6% Similarity=-0.096 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHHhccCCCCC------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh--
Q 004856 480 YAKCGCIEMAGELFDEEKIDSKD------------------IITWNSMISAYAKHGDWSQCFKLYTQMKQSD-VRPDL-- 538 (727)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-- 538 (727)
+.+.|++++|.+.|.++....|+ ..++..+...|...|++++|.+.+.++...- ..++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 45667777777777653221111 1246677888888888888888888776521 11122
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC
Q 004856 539 --ITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS-QEHYASMVNLLGRAGHMDEARELVKDM-----P--FKPD 605 (727)
Q Consensus 539 --~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~ 605 (727)
...+.+...+...|.++.+..+++...... +..+. ..++..|...|...|++++|..++++. . .+|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 123333334445678888888887765321 22233 456778888889999999998888766 1 1222
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 606 -ARVWGPLLSACKMHSETELAELTAEKLISME---PEN----AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 606 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
..++..++..|...|++++|...+++++... +.+ ...+..++..+...|++++|...+....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2366667777899999999999999888643 221 23455677788888999998888776643
No 184
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.96 E-value=0.00011 Score=67.45 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 607 RVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 607 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
..|..+...+...|++++|+..++++++++|++..++..++.+|...|++++|.+.+++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 567777778999999999999999999999999999999999999999999999999988765
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=2.6e-05 Score=65.52 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------cchHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN-------AGNYV 644 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 644 (727)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778889999999999999999987 3334 56677788888999999999999999999988766 77889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 645 LLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988775
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=2.6e-05 Score=68.89 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-chHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENA-GNYVLLSNI 649 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 649 (727)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 346777777788888888888877776 3444 455777777788899999999999999999999877 444444433
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00058 Score=71.27 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=92.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-----Ch---------------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH
Q 004856 377 DMYCECEDLNCARKIFDSVKTK-----TV---------------VSWSSMIKGYVTHDQSLEALRLFSEMKLEG-VEVDF 435 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 435 (727)
..+.+.|++++|.+.|..+.+. +. .++..+...|...|++++|.+.+.+....- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456677888887777665421 00 135566777777777777777776665421 11111
Q ss_pred H---HHHHHH-HHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004856 436 V---TIINIL-PACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMIS 511 (727)
Q Consensus 436 ~---t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~ 511 (727)
. .....+ ..+...|+.+.+..++...... .........-..++..+..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF----------------------------AKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH----------------------------HHHSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------------------------HHHhCccHHHHHHHHHHHH
Confidence 1 111111 2223344555555544433321 0001100111234455555
Q ss_pred HHHHcCChHHHHHHHHHHHHC--CC--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--hhHHHHHH
Q 004856 512 AYAKHGDWSQCFKLYTQMKQS--DV--RPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESY---GYEPS--QEHYASMV 581 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li 581 (727)
.|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++...... +.++. ...+..+.
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 566666666666665554431 11 111 2345555666666666666666665544321 11111 22344555
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 004856 582 NLLGRAGHMDEARELVKD 599 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~ 599 (727)
..+...|++++|...+.+
T Consensus 224 ~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 555566666666555443
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.87 E-value=7.6e-05 Score=65.35 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----hh
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVR-PD----LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS----QE 575 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 575 (727)
++..+...|...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666665542100 11 135666666677777777777777765543111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-------PFKP-DARVWGPLLSACKMHSETELAELTAEKLISME 636 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 636 (727)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777777655 1111 12345555666788888888888888877643
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=9.2e-05 Score=77.69 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHhHHhc--CCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-hhHHH
Q 004856 548 CVNAGLVEEGRIIFKEMKESY--GYEP---S-QEHYASMVNLLGRAGHMDEARELVKDM---------PFKPDA-RVWGP 611 (727)
Q Consensus 548 ~~~~g~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 611 (727)
+...|++++|+.++++..+.. -+.| + ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334566666666665554321 1111 1 335666666666666666666666554 233443 36677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc-----cCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 612 LLSACKMHSETELAELTAEKLIS-----MEPENAGN---YVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 612 ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
|...|..+|++++|+.+++++++ +.|+++.+ ...+..++...|++++|..+++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888876 46776654 4477788889999999999999998754
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=4.8e-05 Score=76.45 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 004856 505 TWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLL 584 (727)
Q Consensus 505 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 584 (727)
.|..+...+.+.|++++|+..|++.+. +.|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 455566666677777777777777766 3454331 11222222222111 1 12455666666
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHH-HHhcCChhHHHH
Q 004856 585 GRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNI-YAAAGKWNGVAK 661 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~ 661 (727)
.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++..++..+..+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777666666665 3334 344566666667777777777777777777777766666666665 333455556666
Q ss_pred HHHHHHhC
Q 004856 662 MRTFLRDR 669 (727)
Q Consensus 662 ~~~~m~~~ 669 (727)
.++.|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 66665443
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=1e-05 Score=66.92 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHhHHhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHH
Q 004856 552 GLVEEGRIIFKEMKESYGY-EP-SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAEL 627 (727)
Q Consensus 552 g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 627 (727)
|++++|+..|++..+. +. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555432 10 12 2334555555555556666665555554 2233 33455555555667777777777
Q ss_pred HHHHHHccCCCCcch
Q 004856 628 TAEKLISMEPENAGN 642 (727)
Q Consensus 628 ~~~~~~~~~p~~~~~ 642 (727)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 777777776765544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=3e-05 Score=77.95 Aligned_cols=114 Identities=9% Similarity=-0.089 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 004856 539 ITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM 618 (727)
Q Consensus 539 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 618 (727)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34666777888889999999999988754 344321 233445555554432 1367778888999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 619 HSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 619 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.|++++|+..++++++++|++..++..++.+|...|++++|...+++..+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=0.00014 Score=73.92 Aligned_cols=113 Identities=6% Similarity=-0.033 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKP-DARVWGPLLSAC 616 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 616 (727)
...+..+...+.+.|++++|+..|++..+. .++.. .....+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 445777788888888999998888887753 11100 001111111 1223 345777788889
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 617 KMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 617 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988765
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=0.0001 Score=77.46 Aligned_cols=113 Identities=9% Similarity=-0.033 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACK 617 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 617 (727)
...+..+...+.+.|++++|...|+++.+...-.++.. -++..+ ... -....|..+..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~-~~~----~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA-SES----FLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-HHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-HHH----HHHHHHHHHHHHHH
Confidence 45677777777788888888888877775311111100 001000 000 01357777888899
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+.|++++|+..++++++++|++..+|..++.+|...|++++|+..+++..+.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998776
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=6.3e-05 Score=61.14 Aligned_cols=92 Identities=14% Similarity=-0.021 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchHH
Q 004856 573 SQEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPEN------AGNYV 644 (727)
Q Consensus 573 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 644 (727)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888888888888888877 3344 55677777788999999999999999999999988 67778
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 004856 645 LLSNIYAAAGKWNGVAKMRT 664 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~~ 664 (727)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777665544
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.67 E-value=0.00016 Score=57.55 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=55.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 605 DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 605 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45577777778888999999999999999999988899999999999999999999988876554
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.00017 Score=55.87 Aligned_cols=81 Identities=25% Similarity=0.303 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHH
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYA 651 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 651 (727)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666677777777777777777766 2333 45567777777888999999999999999999988888888888877
Q ss_pred hcC
Q 004856 652 AAG 654 (727)
Q Consensus 652 ~~g 654 (727)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00011 Score=60.19 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=56.7
Q ss_pred HHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 593 ARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 593 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++..++..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445444 3344 44566667777888888888888888888888888888888888888888888888888876554
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00017 Score=75.73 Aligned_cols=114 Identities=15% Similarity=-0.010 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc---chHH
Q 004856 583 LLGRAGHMDEARELVKDM---------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA---GNYV 644 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~ 644 (727)
.+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999988776 233443 4788888889999999999999999987 456555 4677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHHH
Q 004856 645 LLSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEIM 714 (727)
Q Consensus 645 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~~ 714 (727)
.|+.+|..+|++++|..++++..+-..+ .-...||.+.++...+.+. .++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987653210 1124699999999888887 44433
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=3.5e-05 Score=66.04 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCC
Q 004856 622 TELAELTAEKLISMEPENAGNYVLLSNIYAAAG-----------KWNGVAKMRTFLRDRG 670 (727)
Q Consensus 622 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~~ 670 (727)
+++|+..|+++++++|++..+|..++.+|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999875 8999999999887763
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.55 E-value=0.0016 Score=70.15 Aligned_cols=148 Identities=11% Similarity=-0.011 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGL----------VEEGRIIFKEMKESYGYEPSQEHYASMVNLLG 585 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 585 (727)
...++|++.++++.+ +.|+ ...|+.--.++...|+ +++++..++.+.+. .+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345788999999998 5675 5667777777777777 99999999999975 3445778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhc-------
Q 004856 586 RAG--HMDEARELVKDM-PFKP-DARVWGPLLSACKMHS-ETELAELTAEKLISMEPENAGNYVLLSNIYAAA------- 653 (727)
Q Consensus 586 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 653 (727)
+.| ++++++++++++ ...| +...|+.-...+...| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 4445 6778999888888889 899999999999999999999999999998874
Q ss_pred -------CChhHHHHHHHHHHh
Q 004856 654 -------GKWNGVAKMRTFLRD 668 (727)
Q Consensus 654 -------g~~~~a~~~~~~m~~ 668 (727)
+.++++.+++++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 556888888877654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.48 E-value=0.001 Score=56.46 Aligned_cols=89 Identities=8% Similarity=-0.095 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh---
Q 004856 580 MVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEPENAGNYVLLSNIYAA--- 652 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 652 (727)
|...|...+..++|.++|++.-...+...+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555544212334444444444444 55666666666666654 345666666666666
Q ss_pred -cCChhHHHHHHHHHHhCC
Q 004856 653 -AGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 653 -~g~~~~a~~~~~~m~~~~ 670 (727)
.++.++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 666666666666666554
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.42 E-value=0.00045 Score=71.32 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=77.4
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc---chHHH
Q 004856 584 LGRAGHMDEARELVKDM---------PFKPD-ARVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA---GNYVL 645 (727)
Q Consensus 584 ~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~ 645 (727)
+.+.|++++|++++++. +..|+ ..+++.+..+|...|++++|+.+++++++ +.|+++ ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666555544 11122 23667777778888888888888888876 345554 46778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHH-HHHH
Q 004856 646 LSNIYAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGIL-ELEI 713 (727)
Q Consensus 646 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~l-~~~~ 713 (727)
|+.+|..+|++++|..++++..+--. + .-...||...+++..|.+. .+++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765311 0 1234699999999888887 5554
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00032 Score=72.28 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHhC---------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc---chHHHHHHH
Q 004856 588 GHMDEARELVKDM---------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA---GNYVLLSNI 649 (727)
Q Consensus 588 g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~ 649 (727)
|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..+..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555443 122333 3677777778888888888888888876 345554 467789999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHH
Q 004856 650 YAAAGKWNGVAKMRTFLRDRGLKKTPGCSWIEIGKLVHEFWAADQSHPQADAIYTILGI 708 (727)
Q Consensus 650 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 708 (727)
|..+|++++|..++++..+-... .-...||.+.+++..|+.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHHC
T ss_pred HHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHhc
Confidence 99999999999999987653210 123469999998887753
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.38 E-value=6.1e-06 Score=82.31 Aligned_cols=273 Identities=12% Similarity=0.042 Sum_probs=154.5
Q ss_pred ChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhHHHHHHHHHHH
Q 004856 80 LLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCSCLLDFISGEKIHAQVVK 159 (727)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 159 (727)
+++.|.+.-++..+|.+ |..|-++....+...+|++.|-+. -|+..|..+|.++.+.|.++.-...+....+
T Consensus 40 ~ldRa~eyA~~~n~p~V--Ws~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPAV--WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCCC--SSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCccH--HHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45555555455555554 777777777777777777665221 3555677777777777777766666654443
Q ss_pred HcCCCchhHHHHHHHhhhccCCCChhhhhhhccCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHH
Q 004856 160 LGFDSFDDVGDALVEFYIKCDGGFENEKGMIQRKFKDLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINL 239 (727)
Q Consensus 160 ~~~~~~~~~~~~li~~y~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 239 (727)
. ..++.+-+.|+-.|++. +++.+-+.. +..||+.--..+.+-|...|.++.|.-+|..+..
T Consensus 112 ~--~ke~~IDteLi~ayAk~--~rL~elEef--l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN------------- 172 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKT--NRLAELEEF--INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN------------- 172 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTS--CSSSTTTST--TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------------
T ss_pred H--hcccccHHHHHHHHHhh--CcHHHHHHH--HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------------
Confidence 3 34556667888888888 766555444 2246666667777777777777777666654322
Q ss_pred HHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHH
Q 004856 240 LRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESL 319 (727)
Q Consensus 240 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 319 (727)
|..|...+.+.|++..|...-++ ..++.+|-.+-.+|...+.+.-|.
T Consensus 173 -------------------------------~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 173 -------------------------------FGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp -------------------------------CTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHH
Confidence 22333344445555444432222 135666777777777777666554
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--
Q 004856 320 ELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGS-DYQVSVHNSLIDMYCECEDLNCARKIFDSVK-- 396 (727)
Q Consensus 320 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 396 (727)
-.--.+. +.|| .+..++..|-..|-+++-..+++..+ |+ ......++-|.-.|+|- +.++..+.++..-
T Consensus 220 icGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr 291 (624)
T 3lvg_A 220 MCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSR 291 (624)
T ss_dssp HHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS
T ss_pred Hhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 3332222 1122 12233444556666666665555443 22 23455666666666664 3333333333222
Q ss_pred --CC-------ChhHHHHHHHHHHhcCChHHHH
Q 004856 397 --TK-------TVVSWSSMIKGYVTHDQSLEAL 420 (727)
Q Consensus 397 --~~-------~~~~~~~li~~~~~~g~~~~A~ 420 (727)
-| ....|.-++-.|.+-.++|.|.
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 11 2345777777777777777664
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00024 Score=57.53 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS------- 573 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------- 573 (727)
+...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|+..+++..+ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 3456667777777888888888888887774 34 566777777888888888888888887774 3454
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 574 QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 574 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
...+..+..++...|+.++|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 344555555565556555555544443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.31 E-value=0.00027 Score=60.47 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=61.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCH----------HHHHHHHHHhHHhcCCCCC-hhHHHHHH
Q 004856 514 AKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLV----------EEGRIIFKEMKESYGYEPS-QEHYASMV 581 (727)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~li 581 (727)
.+.+++++|++.+++..+. .| +...|..+..++...+++ ++|+..|++..+. .|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 4555677777777777763 34 566666666666666554 3555555555532 343 34555555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc
Q 004856 582 NLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENA 640 (727)
Q Consensus 582 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 640 (727)
.+|...|.+ .|+.. ...|++++|+..|+++++++|++.
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 555544432 23221 112689999999999999999764
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.28 E-value=0.0011 Score=51.57 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCHhhHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 604 PDARVWGPLLSACKMHSE---TELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 604 p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
++...+..+..++...++ .++|..+++++++++|++..+...++..+.+.|++++|+.+|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777544444 79999999999999999999999999999999999999999999987744
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.17 E-value=0.0025 Score=49.08 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 606 ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 606 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4467777777999999999999999999999999999999999999999999999999988765
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.17 E-value=0.0014 Score=53.50 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHhccCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 004856 489 AGELFDEEKIDSK-DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 489 A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 566 (727)
|...|++.....| +...|..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444332233 5667777777777777777777777777763 34 456677777777777777777777777664
Q ss_pred h
Q 004856 567 S 567 (727)
Q Consensus 567 ~ 567 (727)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.10 E-value=0.0059 Score=51.68 Aligned_cols=112 Identities=11% Similarity=-0.090 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 004856 517 GDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR----AGHMDE 592 (727)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 592 (727)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788888888888877 44433 666677777888888888888765 356677778888877 788999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKM----HSETELAELTAEKLISMEP 637 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p 637 (727)
|.++|++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887333466677777777777 7899999999999888753
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.011 Score=58.19 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc---C-----CHHHHHHHHHHhHH
Q 004856 501 KDIITWNSMISAYA--KHG---DWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNA---G-----LVEEGRIIFKEMKE 566 (727)
Q Consensus 501 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~---g-----~~~~a~~~~~~~~~ 566 (727)
.+...|...+.+.. ..+ +..+|..+|++.++ +.|+ ...|..+..++... + ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666776665543 223 34788999999988 5676 45555554444310 0 01111111111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 567 SYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 567 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1012344556666665566667777777777766 34455555544555566777777777777777777774
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.06 E-value=0.047 Score=44.12 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=105.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 592 (727)
+.-.|..++..++..+.... .+..-|+.++--....-+-+...++++.+-+-|.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888888888888763 35566777776666666666667777666543222 24677777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 593 ARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 593 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
....+-.++ .+..-...-+..+..+|..+.-..++..++..+|.++.....++.+|.+.|+..+|.+++++..++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777776664 234455666777889999999999999987777778999999999999999999999999999999985
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.94 E-value=0.0041 Score=49.16 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 502 DIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 502 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
+...|..+...|...|++++|+..|++.++. .| +...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888888888888888888888774 34 4667778888888888888888888877643
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0053 Score=63.20 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCc
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM---------PFKPDA-RVWGPLLSACKMHSETELAELTAEKLIS-----MEPENA 640 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~ 640 (727)
+++.|..+|...|++++|+.+++++ +..|+. .+++.|...|..+|++++|+.+++++++ ++|+++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444433 123433 2556666667777777777777777765 356555
Q ss_pred chH
Q 004856 641 GNY 643 (727)
Q Consensus 641 ~~~ 643 (727)
.+-
T Consensus 422 ~~~ 424 (433)
T 3qww_A 422 YIS 424 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.83 E-value=0.00046 Score=69.18 Aligned_cols=439 Identities=11% Similarity=0.044 Sum_probs=233.0
Q ss_pred CchhhHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 004856 63 QNLILSSNLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAEDTYPFVIRSCS 142 (727)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 142 (727)
-.+.+|+.|..++.+.|.+.+|.+-|=+. .|...|..+|.+..+.|.+++-+..+.-.++. .-++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 45678999999999999999998876444 45556889999999999999999888666654 234444567888899
Q ss_pred ccCChhHHHHHH------------HHHHHHcCC-------CchhHHHHHHHhhhccCCCChhhhhhh-ccCCCCCcccHH
Q 004856 143 CLLDFISGEKIH------------AQVVKLGFD-------SFDDVGDALVEFYIKCDGGFENEKGMI-QRKFKDLKSRWN 202 (727)
Q Consensus 143 ~~~~~~~a~~~~------------~~~~~~~~~-------~~~~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~~~~~ 202 (727)
+.+++.+-+.++ +...+.|.- .++.-|.-|-..+.+. |++..|... .+ ..++.+|-
T Consensus 128 k~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L--~~yq~AVdaArK--Ans~ktWK 203 (624)
T 3lvg_A 128 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL--GEYQAAVDGARK--ANSTRTWK 203 (624)
T ss_dssp TSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC--SGGGSSTTTTTT--CCSSCSHH
T ss_pred hhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH--HHHHHHHHHHHh--cCChhHHH
Confidence 888766543322 222222210 0011112222222333 444333332 21 24778899
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHhCCCCCChhhHHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhHHhHHHHHhhcCC
Q 004856 203 SLISLAVQNGKSEKSFELFKLMRMEGAEFDSGTLINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSVNTALLSMYSKLA 282 (727)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 282 (727)
.+-.+|...+.+.-|.-.--.+.- .|| -...++..|-..|.+++-..+++..+... ......++-|.-.|+|-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence 999999999998877665444432 122 23345556778888888888887766221 34566788888888875
Q ss_pred ChHHHHHHHhcCCC----C-------CeehHHHHHHHHHhcCCchHHHHHHHH--------HHHcC---CCCChhhHHHH
Q 004856 283 SLEDAKMLFDKMSD----K-------DRVVWNIMISAYYQSGFPKESLELLMC--------MVRSG---FRADLFTAIAA 340 (727)
Q Consensus 283 ~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~g---~~p~~~t~~~l 340 (727)
++++-.+-++..-. | ....|.-++-.|.+-.+++.|....-+ ..-.. -.+|...|-..
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKA 356 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 356 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHH
Confidence 34444444443322 2 556788888888888888866433211 00000 02334444444
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH-HHHHHHHhcCChHHH
Q 004856 341 VSSISTMKNIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWS-SMIKGYVTHDQSLEA 419 (727)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A 419 (727)
|..|....-. .--.++.-+ ...+.+ +-.++.+.+.|++......+..+...|...-| ++-..|....+++.-
T Consensus 357 i~FYL~e~P~-lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 357 IQFYLEFKPL-LLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp HHHHTTSCCT-TSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhChH-HHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 4444332110 000111100 001111 12344556666666666666666655554333 444555555555432
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004856 420 LRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKID 499 (727)
Q Consensus 420 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 499 (727)
. .-+..|-+-.....|.++ .++. -...-..-...|.+.+++.++..+..+=.
T Consensus 430 R-------------------~SId~ydNFD~i~LA~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkDk-- 481 (624)
T 3lvg_A 430 R-------------------TSIDAYDNFDNISLAQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKDS-- 481 (624)
T ss_dssp H-------------------HTTSSCCCSCTTHHHHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTTC--
T ss_pred H-------------------HHHHHhccccHHHHHHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhcc--
Confidence 1 112222222222323222 1111 11111222334666666666655543311
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRI 559 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 559 (727)
.|.-.|...+..|+.+-|.++++-..+.| +...|...+-.|...=+++-+++
T Consensus 482 -----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 482 -----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp -----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred -----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 11112333345566666666666666644 44556666666555545544443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.011 Score=60.82 Aligned_cols=37 Identities=5% Similarity=-0.322 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCcchHH
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLIS-----MEPENAGNYV 644 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 644 (727)
+++.|...|..+|++++|+.+++++++ +.|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 455566667777777777777777765 4566655443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.57 E-value=0.0049 Score=48.42 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 580 MVNLLGRAGHMDEARELVKDM-PFKP-DAR-VWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 580 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455667778888888877776 3344 334 566666667777888888888888888877776665
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.0098 Score=46.59 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHc
Q 004856 543 GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE-HYASMVNLLGRAGHMDEARELVKDM-PFKPDAR-VWGPLLSACKMH 619 (727)
Q Consensus 543 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~ 619 (727)
.....+...|++++|...++.+.+. .+.+.. .+..+..+|.+.|++++|.+.+++. ...|+.. .+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 3456677888888888888888764 233456 7788888888888888888888877 3445432 2211
Q ss_pred CCHHHHHHHHHHHHccCCCCc
Q 004856 620 SETELAELTAEKLISMEPENA 640 (727)
Q Consensus 620 g~~~~A~~~~~~~~~~~p~~~ 640 (727)
+.+.++...+++....+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 456667777777766666543
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.55 E-value=0.026 Score=55.65 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHH--hcC---CHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH----hcCC-------HHHHHHHH
Q 004856 535 RPDLITFLGLLTACV--NAG---LVEEGRIIFKEMKESYGYEPS-QEHYASMVNLLG----RAGH-------MDEARELV 597 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~--~~g---~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~~ 597 (727)
+.+...|...+++.. ..+ ...+|..+|++..+. .|+ ...|..+..+|. ..+. +..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 456677777776643 333 357899999999964 676 334444333332 1111 11223322
Q ss_pred HhCCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 004856 598 KDMPF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRG 670 (727)
Q Consensus 598 ~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 670 (727)
..+.. ..+..++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++.....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23322 34566777776667778999999999999999997 57788899999999999999999998876653
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.46 E-value=0.086 Score=59.80 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHH
Q 004856 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 456 (727)
......|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567899999998887763 567899999999999999999999988753 3334444444666666555
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE 495 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 495 (727)
+-+.....|. ++.-..+|.+.|++++|.+++.+
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444444331 12223335555666666555543
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.34 E-value=0.019 Score=48.52 Aligned_cols=89 Identities=18% Similarity=0.073 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHhhHHHHHHHHHHcCCHHHH
Q 004856 553 LVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAG---HMDEARELVKDM-PFK-P--DARVWGPLLSACKMHSETELA 625 (727)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~A 625 (727)
.+..+++.|.+.... + .++..+...+..++++.+ +.+++..++++. ... | ....+-.|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666666553 3 367777777788888877 555788777766 222 4 233444455557888888888
Q ss_pred HHHHHHHHccCCCCcchH
Q 004856 626 ELTAEKLISMEPENAGNY 643 (727)
Q Consensus 626 ~~~~~~~~~~~p~~~~~~ 643 (727)
.+.++++++.+|++..+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCCCCHHHH
Confidence 888888888888665443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.15 Score=57.88 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
.....|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...
T Consensus 661 ~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3466788888888876653 568899999999999999999999988754 345555555677776665
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
++-+..... | -++.-..+|.+.|++++|++++.+++
T Consensus 728 ~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555544433 2 12333445566777777777766553
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.12 E-value=0.016 Score=54.68 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHHHHHhC-CCCCC---HhhHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCC-cchHHHHHHHHHhc-CChhH
Q 004856 590 MDEARELVKDM-PFKPD---ARVWGPLLSACKM-----HSETELAELTAEKLISMEPEN-AGNYVLLSNIYAAA-GKWNG 658 (727)
Q Consensus 590 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 658 (727)
..+|...+++. .+.|+ ...|..+...|.+ -|+.++|++.|+++++++|+. ..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 45555 4466666666666 488888888888888888864 88888888887774 88888
Q ss_pred HHHHHHHHHhCCCccCCc
Q 004856 659 VAKMRTFLRDRGLKKTPG 676 (727)
Q Consensus 659 a~~~~~~m~~~~~~~~~~ 676 (727)
+.+++++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888888887776544343
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.03 E-value=0.034 Score=44.06 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHH
Q 004856 576 HYASMVNLLGRAGHMDEARELVKDM-----P----FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLL 646 (727)
Q Consensus 576 ~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 646 (727)
-+..|...+.+.|+++.|..+++.+ + ..+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445555566666666666666554 0 112445777788889999999999999999999999887765544
Q ss_pred H
Q 004856 647 S 647 (727)
Q Consensus 647 ~ 647 (727)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.93 E-value=2.3 Score=45.59 Aligned_cols=250 Identities=11% Similarity=0.015 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
-+.-+..+.+.+++......+.. ...+...-.....+....|+..+|....+++-..| ......+..++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34445556667778777776665 33344444445666677788777777777666554 22233444555555544433
Q ss_pred HHH--HHHHHHHHHhC-----------CCchH-hHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHH---HHHHHHHHHH
Q 004856 452 EHV--KYLHGYSMKLG-----------LNSLS-SVNTAIFISYAKCGCIEMAGELFDEEKIDSKDII---TWNSMISAYA 514 (727)
Q Consensus 452 ~~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~li~~~~ 514 (727)
... .+=+..+...| ++++. .....++..+.+-..+ ....... .++.. .+..-+.-++
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~---~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT---GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS---CCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc---CCChhhHHHHHHHHHHHH
Confidence 221 11111111111 11111 1112222222222111 1111111 11111 1111122223
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 004856 515 KHGDWSQCFKLYTQMKQSDVRPDLITFL----GLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHM 590 (727)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 590 (727)
+ .+.+.|..++....... ..+..... .+.......+...++...+...... .++.....-.+..-.+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 36677777777765432 22322222 2222222334234555555554332 23333333334444466778
Q ss_pred HHHHHHHHhCCCCC-CHhh-HHHHHHHHHHcCCHHHHHHHHHHHHc
Q 004856 591 DEARELVKDMPFKP-DARV-WGPLLSACKMHSETELAELTAEKLIS 634 (727)
Q Consensus 591 ~~A~~~~~~~~~~p-~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~ 634 (727)
+.|...|+.|+..+ +..- .--+..+....|+.++|..+|+++..
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887775332 2122 22233345667777777777777764
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.87 E-value=0.043 Score=42.37 Aligned_cols=68 Identities=13% Similarity=0.032 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 571 EPSQEHYASMVNLLGRAGH---MDEARELVKDM-PFKPDAR-VWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
+.+...+..+..++...++ .++|..++++. ...|+.. .+..+...+.+.|++++|+..++++++.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456666677776654443 57777777776 4556444 4444445578888888888888888888886
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=1 Score=39.02 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=86.2
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGR 558 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 558 (727)
.-..+|+++.|.++.+++. +...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3467888888888877653 577899999999999999999998887654 445556666778877666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004856 559 IIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKL 632 (727)
Q Consensus 559 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 632 (727)
++-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.. .-....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 655544433 2 1233344555678888888888887533321 11234567777777776654
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.50 E-value=0.051 Score=45.89 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAG---LVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRAGHMDE 592 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 592 (727)
....+.+.|.+....| .++..+...+..++.+.+ +.++++.+++...+. . .| ....+-.|.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 3566777787777766 478888888888999888 677999999998876 3 35 35566677888899999999
Q ss_pred HHHHHHhC-CCCCCHhh
Q 004856 593 ARELVKDM-PFKPDARV 608 (727)
Q Consensus 593 A~~~~~~~-~~~p~~~~ 608 (727)
|.++++.+ .++|+..-
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999988 66775433
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.71 Score=39.99 Aligned_cols=104 Identities=10% Similarity=0.152 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHH
Q 004856 377 DMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKY 456 (727)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 456 (727)
+...++|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456778888888887765 4567888888888888888888888887653 3334444455566665555
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004856 457 LHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEK 497 (727)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 497 (727)
+-+.....|- ++.-...+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5444444441 2222333445577777776665544
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.38 Score=52.58 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 004856 616 CKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLR 667 (727)
Q Consensus 616 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 667 (727)
|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|.-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 7789999999999999999999999999999999999999999999999874
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.24 E-value=0.26 Score=39.88 Aligned_cols=98 Identities=20% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CHh-hHHHHHHHHH
Q 004856 545 LTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDE---ARELVKDM-PFK-P-DAR-VWGPLLSACK 617 (727)
Q Consensus 545 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~ll~~~~ 617 (727)
+..-.....+..+.+-|...... |. |+..+--.+..++.+..+..+ ++.++++. ... | ... ..-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 33344445556666666666554 33 677777777788888776655 77777766 222 3 222 2333334478
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHH
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYV 644 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ 644 (727)
+.|++++|.+.++.+++.+|++..+..
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888888887665544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.67 E-value=0.93 Score=36.69 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=65.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHH
Q 004856 510 ISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE---GRIIFKEMKESYGYEP--SQEHYASMVNLL 584 (727)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~ 584 (727)
+..-........+.+.|.+....| .|+..+-..+..++.+...... ++.+++.+... + .| .....-.|.-++
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHH
Confidence 333334445566677777766655 4777777778888888776665 88888887754 2 24 344555677888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHh
Q 004856 585 GRAGHMDEARELVKDM-PFKPDAR 607 (727)
Q Consensus 585 ~~~g~~~~A~~~~~~~-~~~p~~~ 607 (727)
.|.|++++|.++++.+ ...|+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999887 5666543
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.55 E-value=0.42 Score=37.59 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYG-----YEPSQEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+...+...|+++.|...++...+... -.+...++..|..+|.+.|++++|...++++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444444444444444444444443210 0112334444555555555555555555444
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.42 E-value=12 Score=41.83 Aligned_cols=260 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred HhhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----------hhHHHHHHHH
Q 004856 343 SISTMKNIEWGKQMHANVLRNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVK-TKT----------VVSWSSMIKG 409 (727)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 409 (727)
+....|+.+++..++...+..+ -.+.......+.-+...+|.-+++..++.... ..+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556778887777766544321 11122333444445556666556666554432 122 1122333334
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHH--hcC
Q 004856 410 YVTHDQ-SLEALRLFSEMKLEGVEVDFVTI--INILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYA--KCG 484 (727)
Q Consensus 410 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g 484 (727)
++-.|. -+++.+.+..+....- +..... .++...+...|+.+....++..+.+.. +..+...++.+++ -.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 443443 2466777777665321 111111 122233556677777777777766532 2233333333333 567
Q ss_pred CHHHHHHHHHhccCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 004856 485 CIEMAGELFDEEKIDSKDIITWN---SMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIF 561 (727)
Q Consensus 485 ~~~~A~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 561 (727)
+.+.+..+.+.+........-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777776553222233343 23446677788777777888887631 222222333333444456656666666
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHhhH
Q 004856 562 KEMKESYGYEPSQEHYASMVNLLGRAGHM-DEARELVKDMPFKPDARVW 609 (727)
Q Consensus 562 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 609 (727)
+.+.+. ..|.+..-..+.-+....|.. .+|.+.+..+...+|..+-
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 655542 345544444444444445543 5677777777545555433
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.25 E-value=2.8 Score=34.06 Aligned_cols=139 Identities=8% Similarity=-0.044 Sum_probs=83.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 412 THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 412 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
-.|..++..++..+.... .+..-|+.++.-.....+-+-..+.++.+-+ ..| ...||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 456666666666666543 2333344444333333333333333222211 111 234566666555
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 004856 492 LFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYE 571 (727)
Q Consensus 492 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 571 (727)
.+-.+. .+......-+..+...|+-++-.+++..+... .+|++.....+..||.+.|+..++.+++.++.++ |++
T Consensus 83 C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 83 CGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 555443 34455566677788888888888888886442 4778888888888888888888888888888877 654
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.21 E-value=1.5 Score=41.40 Aligned_cols=112 Identities=9% Similarity=0.038 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHh-
Q 004856 484 GCIEMAGELFDEEKIDSKDIITWNSMISA-YAKH--GD------WSQCFKLYTQMKQSDVRPD---LITFLGLLTACVN- 550 (727)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~- 550 (727)
|+..+-.+.+.+.....+....|..++.+ +... |+ ..+|..++++.++ +.|+ ...|..+...|..
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 33344444444444222344567666543 3332 32 4567777777777 5676 4567778777877
Q ss_pred ----cCCHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 004856 551 ----AGLVEEGRIIFKEMKESYGYEP--SQEHYASMVNLLGRA-GHMDEARELVKDM 600 (727)
Q Consensus 551 ----~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 600 (727)
.|+.++|.+.|++..+. .| +..++....+.|++. |+.++|.+.+++.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 48888888888888854 45 366777778888774 8888888888776
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.71 E-value=7.3 Score=37.39 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=99.5
Q ss_pred hHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHH----HHHHHHcCCCCChhhHHHHHHHhhcC
Q 004856 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLEL----LMCMVRSGFRADLFTAIAAVSSISTM 347 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (727)
.++..=|.+.+++++|..++.. -...+.+.|+...|-++ .+...+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3455567778888888887654 23455677887776664 45556678889988888888777664
Q ss_pred CChH-HHHHHHHHHHH----hCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CChH
Q 004856 348 KNIE-WGKQMHANVLR----NGS--DYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTH---DQSL 417 (727)
Q Consensus 348 ~~~~-~a~~~~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 417 (727)
..-+ .-.++...+++ .|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 22344444443 332 236677888899999999999999888633323455555555544443 4433
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004856 418 EALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSM 462 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 462 (727)
++- ...-..++ -+...++...|..+++...
T Consensus 186 e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 186 TVA--------------EFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred hHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 321 11112222 2345667777777666443
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.45 E-value=2.6 Score=34.77 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-CHhhH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 571 EPSQEHYASMVNLLGRAGHMD---EARELVKDM-PFKP-DARVW-GPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.|+..+--.+..++.+..+.+ +++.++++. ...| +..-+ --|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 566666666677777766543 566666655 2233 22222 233334778888888888888888888866544
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.94 E-value=1.1 Score=37.39 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchH
Q 004856 588 GHMDEARELVKDM-PF-KPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNY 643 (727)
Q Consensus 588 g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 643 (727)
++.++|.++|+.+ .. +.=...|.....--.++|+++.|..++.+++.+.|.+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 4555555555544 10 11134555555556678888888888888888777544433
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.64 E-value=1.1 Score=37.37 Aligned_cols=55 Identities=11% Similarity=-0.059 Sum_probs=44.4
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 618 MHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 618 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
..+|.++|.++|+.++++...-+..+...+.--.++|+...|++++.+....+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4478999999999998875545566667777788999999999999988876543
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.21 E-value=27 Score=39.10 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=140.0
Q ss_pred HhhcCCChHHHHHHHhcCCCC----Ce--ehHHHHHHHHHhcCCchHHHHHHHHHHHcCC--C-----CChhhHHHHHHH
Q 004856 277 MYSKLASLEDAKMLFDKMSDK----DR--VVWNIMISAYYQSGFPKESLELLMCMVRSGF--R-----ADLFTAIAAVSS 343 (727)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~~ 343 (727)
+....|+.+++..+++..... +. ..-..+.-+....|..+++++++.......- . +....-.++--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345678888899888876542 21 2223344556677777788887777654321 0 111111222222
Q ss_pred hhcCCC-hHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhcCChH
Q 004856 344 ISTMKN-IEWGKQMHANVLRNGSDYQVS--VHNSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVTHDQSL 417 (727)
Q Consensus 344 ~~~~~~-~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 417 (727)
++-.|. -+++...+..++...- .... ..-+|...|.-.|+-+....++..+.+. ++.-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2344444444443221 1111 1122333445567777767666654322 2222334445566788988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 418 EALRLFSEMKLEGVEVDFVTII---NILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFD 494 (727)
Q Consensus 418 ~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 494 (727)
.+..+++.+.... .| ..-|. .+.-+|+..|+.....+++..+.... ..+..-...+.-++.-.|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887641 22 22332 33456788889888888888877643 2233322233333444677666777776
Q ss_pred hccCC-CCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 004856 495 EEKID-SKDIITWNSMISAYAKHGDW-SQCFKLYTQMKQSDVRPDLITFLGLLTACV 549 (727)
Q Consensus 495 ~~~~~-~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 549 (727)
.+... .|.+..--++.-+....|.. .+++.++..+.. .+|..+-...+.++.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 54431 33333333344444445544 678888888874 455544433333333
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.93 E-value=1.6 Score=35.42 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 571 EPSQEHYASMVNLLGRAGHM---DEARELVKDM-PFKPD--ARVWGPLLSACKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 571 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
.|+..+--.+..++.+..+. .+++.++++. ...|. ...+--|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34455544555555555443 2445555444 12231 1233333334666666666666666666666655443
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.39 E-value=16 Score=35.30 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=83.9
Q ss_pred hHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHH----HHHHHcCCCCChhhHHHHHHHhhcC
Q 004856 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELL----MCMVRSGFRADLFTAIAAVSSISTM 347 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~ 347 (727)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +...+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445557788888888887644 244566778777666554 5556778899998888888887766
Q ss_pred CChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 004856 348 KNIE-WGKQMHANVL----RNG--SDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHD 414 (727)
Q Consensus 348 ~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 414 (727)
..-+ .-..+...++ +.| ..-|......+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 5422 2233344443 334 23356777888888999999999988885322222355555554444433
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.65 E-value=5.1 Score=30.38 Aligned_cols=86 Identities=8% Similarity=0.036 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44556555555555543 22233333445678999999999999999999999988765 467888888888878877
Q ss_pred CCCCCCHHHHH
Q 004856 429 EGVEVDFVTII 439 (727)
Q Consensus 429 ~g~~p~~~t~~ 439 (727)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45544443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.11 E-value=4.8 Score=30.47 Aligned_cols=86 Identities=8% Similarity=-0.031 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 349 NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 349 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
.-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555543 22233333445678999999999999999999999987765 478888888888888877
Q ss_pred CCCCCCHHHHH
Q 004856 429 EGVEVDFVTII 439 (727)
Q Consensus 429 ~g~~p~~~t~~ 439 (727)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45555443
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.75 E-value=8.6 Score=29.20 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.+...|++++|..+.+... .||...|-++-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA--YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4567888889988888887 889988877644 46777777777777777766 55444443
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.84 E-value=6 Score=30.20 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
+.-+..+-++.+....+.|++....+.++||.+.+++..|.++++.++.+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456667777888888999999999999999999999999999999987633 33456766654
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.80 E-value=5 Score=34.08 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 004856 575 EHYASMVNLLGRAGHMDEARELVKDMP 601 (727)
Q Consensus 575 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 601 (727)
+.---+..+|.+.|++++|+.+++..+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333345666667777777777777664
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.04 E-value=23 Score=35.26 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=10.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~ 531 (727)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444455554444444443
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.02 E-value=8.1 Score=29.27 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004856 479 SYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFL 542 (727)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (727)
.+...|++++|..+.+... .||...|-++-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4567788888888888877 888888877643 47777788877777777776 55444443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.72 E-value=14 Score=34.22 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=74.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhc
Q 004856 512 AYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE----HYASMVNLLGRA 587 (727)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 587 (727)
...+.|+.++|++....-++.. +-|...-..|+..+|-.|+|+.|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4456788888888888777753 336777777888888888888888888877743 55533 33333332
Q ss_pred CCHHHHHH-HHHhC--C--CCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHccCCCCcch
Q 004856 588 GHMDEARE-LVKDM--P--FKPDARVWGPLLSA--CKMHSETELAELTAEKLISMEPENAGN 642 (727)
Q Consensus 588 g~~~~A~~-~~~~~--~--~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~ 642 (727)
+..++ +|..- + +.....-...++.+ ....|+.+.|..+-.++.+..|..+..
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 12221 22211 1 11112233344455 456789999999999988887765543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.37 E-value=2.5 Score=42.53 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRD-----RGLKKTP 675 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 675 (727)
...++..+...|+.+++...++.++..+|-+...+..++.+|...|+..+|.+.|+...+ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 344556667788888888888888888888888888888888888888888888877643 3665443
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.34 E-value=22 Score=41.58 Aligned_cols=167 Identities=11% Similarity=0.106 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL 451 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 451 (727)
...++..+.+.+..+.+.++..-.+. +...--.+..+|...|++++|.+.|.+... |+..+.... ...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhh
Confidence 44566667778888888776655543 444445566788899999999999987532 221111000 000
Q ss_pred HHHHHHHHHHHH-hC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHh----ccCCCCC--HHHHHHHHHHHHHcCChHHHH
Q 004856 452 EHVKYLHGYSMK-LG-LNSLSSVNTAIFISYAKCGCIEMAGELFDE----EKIDSKD--IITWNSMISAYAKHGDWSQCF 523 (727)
Q Consensus 452 ~~a~~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 523 (727)
.. +..+.. .. ...-...|..++..+.+.|.++.+.++-.. .....++ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 000111 00 112234566677777777777776665543 2211222 236888999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 004856 524 KLYTQMKQSDVRPDLITFLGLLTACVNAGLVEE 556 (727)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 556 (727)
..+-.+..... -...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99888876432 35567777777777766544
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.27 E-value=7 Score=39.26 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCChhHH
Q 004856 506 WNSMISAYAKHGDWSQCFKLYTQMKQSDVRP-DLITFLGLLTACVNAGLVEEGRIIFKEMKE----SYGYEPSQEHY 577 (727)
Q Consensus 506 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 577 (727)
...++..+...|++++|+..+..+... .| +...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344666777888888888888888764 45 677888888888888888888888877643 34888876643
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.53 E-value=7.5 Score=42.55 Aligned_cols=52 Identities=17% Similarity=-0.035 Sum_probs=41.2
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcC
Q 004856 602 FKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAAAG 654 (727)
Q Consensus 602 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 654 (727)
.+.+..-|..|.....+.+++++|++.|+..+... -++.....|+.+|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence 34566778888888888889999999999988754 36778888888888766
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.76 E-value=52 Score=33.57 Aligned_cols=188 Identities=8% Similarity=0.081 Sum_probs=121.9
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCchHhH--HHHHHHHHHhcC
Q 004856 413 HDQSLEALRLFSEMKLE-----GVEVDFVTIINILPACVNIGALEHVKYLHGYSMK-LGLNSLSSV--NTAIFISYAKCG 484 (727)
Q Consensus 413 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~li~~~~~~g 484 (727)
.|++++|++.+..+.+. ...........++..|...++++........+.+ +|..+...+ ...++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37889999888766542 2444566788899999999999998887766654 443332221 122333333334
Q ss_pred CH--HHHHHHHHhccCCC---C--C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHH
Q 004856 485 CI--EMAGELFDEEKIDS---K--D---IITWNSMISAYAKHGDWSQCFKLYTQMKQS--DVRPD---LITFLGLLTACV 549 (727)
Q Consensus 485 ~~--~~A~~~~~~~~~~~---~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~ 549 (727)
.. +.-..+.+.+.... - . ......|...|...|++.+|..++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33 23344444433221 1 1 123456778889999999999999998743 22221 235667788899
Q ss_pred hcCCHHHHHHHHHHhHHhc-CCC--CC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 004856 550 NAGLVEEGRIIFKEMKESY-GYE--PS--QEHYASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 550 ~~g~~~~a~~~~~~~~~~~-~~~--p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
..+++..|..+++++.... ... |+ ...+..++..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999875321 122 22 346778888888999999998887665
No 258
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=80.72 E-value=41 Score=36.15 Aligned_cols=80 Identities=13% Similarity=-0.052 Sum_probs=36.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHh---
Q 004856 406 MIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAK--- 482 (727)
Q Consensus 406 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 482 (727)
....+.-.|+++.|++.+-+. ...+.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 344555678888888877654 24555555555544332221 11111100 00 11 1224455555554
Q ss_pred cCCHHHHHHHHHhc
Q 004856 483 CGCIEMAGELFDEE 496 (727)
Q Consensus 483 ~g~~~~A~~~~~~~ 496 (727)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46666666666555
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.32 E-value=36 Score=31.66 Aligned_cols=47 Identities=6% Similarity=-0.072 Sum_probs=20.8
Q ss_pred cCChhHHHHHHHHHHHhcCCCChh--HHhHHHHHhhcCCChHHHHHHHh
Q 004856 246 LKSLELGRIVHCVAVVSDFCKDLS--VNTALLSMYSKLASLEDAKMLFD 292 (727)
Q Consensus 246 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 292 (727)
.++.....++.+.+++.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 334333445555566665544321 11222333344455555555544
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.32 E-value=14 Score=29.88 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 519 WSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 34556667777778899999999999999999999999999999998763 344556776664
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.28 E-value=12 Score=34.71 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=32.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 004856 583 LLGRAGHMDEARELVKDM-PFKP-DARVWGPLLSACKMHSETELAELTAEKLISMEPE 638 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 638 (727)
.+.+.|.+++|++....- ..+| |...-..|+..++-.|+++.|..-++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 344566666666655443 3344 3334444555566666666666666666666664
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.79 E-value=56 Score=31.56 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=75.2
Q ss_pred HHhCCCchhHHHH----HHHHHhCCCCCChhhHHHHHHHhcccCChh-HHHHHHHHH----HHhc--CCCChhHHhHHHH
Q 004856 208 AVQNGKSEKSFEL----FKLMRMEGAEFDSGTLINLLRSTVELKSLE-LGRIVHCVA----VVSD--FCKDLSVNTALLS 276 (727)
Q Consensus 208 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~ 276 (727)
+.+.|+...|-++ ++...+.++++|..+...++..+.....-+ .=..+...+ .+.| ..-|+.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 4455555444443 355556778888887777777766554321 112233333 3344 3456777788888
Q ss_pred HhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 004856 277 MYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIEWGKQM 356 (727)
Q Consensus 277 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 356 (727)
.|.+.+++.+|+.-|-.-.++++..+..++.-+...+...++- .+.-..+|. +...+++..|..+
T Consensus 145 ~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~d--------------lfiaRaVL~-yL~l~n~~~A~~~ 209 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAP--------------LYCARAVLP-YLLVANVRAANTA 209 (336)
T ss_dssp HHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHH--------------HHHHHHHHH-HHHTTCHHHHHHH
T ss_pred HHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHH-HHHhCCHHHHHHH
Confidence 8889999999988884322222345544444444443332222 112222222 3345677777766
Q ss_pred HHHHH
Q 004856 357 HANVL 361 (727)
Q Consensus 357 ~~~~~ 361 (727)
++...
T Consensus 210 ~~~f~ 214 (336)
T 3lpz_A 210 YRIFT 214 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.75 E-value=26 Score=26.79 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 590 MDEARELVKDM---PFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 590 ~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.-+..+-++.+ ..-|++.+..+.+.+|++.+|+..|+++++-+...-.+....|-.++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33444444443 56799999999999999999999999999988875544455565554
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.28 E-value=29 Score=29.48 Aligned_cols=54 Identities=4% Similarity=-0.081 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-----CCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004856 375 LIDMYCECEDLNCARKIFDSVK-----TKTV-------VSWSSMIKGYVTHDQSLEALRLFSEMKL 428 (727)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 428 (727)
-+..+...|.++.|+-+.+.+. .+++ .+...+..++...+++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455666777777776655432 1222 1345556677777777777777777543
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.58 E-value=69 Score=30.64 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRL----FSEMKLEGVEVDFVTIINILPACVN 447 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 447 (727)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566668888888888887654 23345667776665554 4455567888888888877777655
Q ss_pred CCChH-HHHHHHHHHH----HhCC--CchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc---C
Q 004856 448 IGALE-HVKYLHGYSM----KLGL--NSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKH---G 517 (727)
Q Consensus 448 ~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~---g 517 (727)
...-+ .-.++.+.++ +.|- ..++.....+...|.+.|++.+|+..|-.-. .-|...+..++.-+... |
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~--~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT--HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CccHHHHHHHHHHHHHhcCCC
Confidence 33111 1122333333 2221 2366677778888888888888888775211 11334444443333322 2
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 004856 518 DWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKES 567 (727)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 567 (727)
...++- ...-.. +--|...|+...|..+++...++
T Consensus 183 ~~~e~d--------------lf~~Ra-VL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVA--------------EFFSRL-VFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHH--------------HHHHHH-HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHH--------------HHHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 222211 111111 22244567888888888776543
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.04 E-value=1.1e+02 Score=32.70 Aligned_cols=365 Identities=8% Similarity=-0.046 Sum_probs=168.0
Q ss_pred hHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChH
Q 004856 272 TALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSISTMKNIE 351 (727)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 351 (727)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+=..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3344555666777777766655 32244444445566666777666666666654443 222333444555444433322
Q ss_pred H--HHHHHHHHHHhC-----------CCCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhcC
Q 004856 352 W--GKQMHANVLRNG-----------SDYQV-SVHNSLIDMYCECEDLNCARKIFDSVKTKTVV---SWSSMIKGYVTHD 414 (727)
Q Consensus 352 ~--a~~~~~~~~~~g-----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 414 (727)
. ..+=+..+...| ++++. .....++..+.+-..+ ........ ++.. .+..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~~-~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhccC-CChhhHHHHHHHHHHHHh-c
Confidence 1 111111111111 11111 1112222222221111 22222111 1111 11111222233 3
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 004856 415 QSLEALRLFSEMKLEG-VEVDFVT--IINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGE 491 (727)
Q Consensus 415 ~~~~A~~~~~~m~~~g-~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 491 (727)
+.+.|...|....... ..+.... ...+.......+...++...+........ +.......+..-.+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHHHH
Confidence 6788888888876543 2222211 12222233344424455555554443332 22223344444556788888888
Q ss_pred HHHhccCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 004856 492 LFDEEKIDSKDIIT-WNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGY 570 (727)
Q Consensus 492 ~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 570 (727)
.|+.|....++..- .-=+..++...|+.++|..+|.++.. +. +|..++.+ .+.|..-. + .....
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~-~~~~~ 371 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------L-KIDKA 371 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------C-CCCCC
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------C-CCCCC
Confidence 88888753222222 12244566778888888888888864 21 33333322 22232100 0 00001
Q ss_pred CCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCcc
Q 004856 571 EPS-QE-----HYASMVNLLGRAGHMDEARELVKDMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEP---ENAG 641 (727)
Q Consensus 571 ~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p---~~~~ 641 (727)
.+. .. .-..-+..+...|...+|...+.......+......+.......|..+.++....+....+. .-+.
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~ 451 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPL 451 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCC
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCc
Confidence 110 00 11223456778899999988777662223333333444445678888888766654433220 1133
Q ss_pred hHHHHHHHHHhcCChhHHH
Q 004856 642 NYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 642 ~~~~l~~~~~~~g~~~~a~ 660 (727)
.|..++.-+.+.-.++...
T Consensus 452 ~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 452 AYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp TTHHHHHHHHTTSSSCHHH
T ss_pred chHHHHHHHHHHcCCCHHH
Confidence 4555555555555555443
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.62 E-value=39 Score=27.42 Aligned_cols=73 Identities=8% Similarity=0.063 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhh
Q 004856 535 RPDLITFLGLLTACVNAGL---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDARV 608 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 608 (727)
.|+..|--.+..++.+... ..+++.+++.+.+. +-.-....+-.|.-++.|.|++++|.++.+.+ ...|+..-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4555555555566666543 34577777776654 31112445556667777788888888777776 56665543
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.94 E-value=66 Score=29.75 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHh
Q 004856 347 MKNIEWGKQMHANVLRNGSDYQVS--VHNSLIDMYCECEDLNCARKIFD 393 (727)
Q Consensus 347 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 393 (727)
.++.....++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 444444456666666666655432 12233444556677766666665
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.91 E-value=1e+02 Score=31.41 Aligned_cols=199 Identities=10% Similarity=0.018 Sum_probs=112.4
Q ss_pred cCCHHHHHHHHhcCC-----CCC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH----Hhc
Q 004856 382 CEDLNCARKIFDSVK-----TKT----VVSWSSMIKGYVTHDQSLEALRLFSEMKLE-GVEVDFVTIINILPA----CVN 447 (727)
Q Consensus 382 ~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a----~~~ 447 (727)
.|+++.|.+.+-.+. ..| ......++..|...|+++...+.+.-+... |..+... ..++.. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhc
Confidence 367888877765443 122 234667888899999999888877666543 3333322 233332 222
Q ss_pred CCChHHHHHH--HHHHHH--hC-CCc---hHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CCC----HHHHHHHHHH
Q 004856 448 IGALEHVKYL--HGYSMK--LG-LNS---LSSVNTAIFISYAKCGCIEMAGELFDEEKID---SKD----IITWNSMISA 512 (727)
Q Consensus 448 ~~~~~~a~~~--~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~li~~ 512 (727)
....+.-..+ ...... .| +-. .......|...|...|++.+|..++.++... .-+ +..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3333321111 111100 11 111 2334566888899999999999999985421 111 3466677888
Q ss_pred HHHcCChHHHHHHHHHHHH----CCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 004856 513 YAKHGDWSQCFKLYTQMKQ----SDVRPD--LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVNLLGR 586 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~----~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 586 (727)
|...+++.+|..++++... ....|+ ...+...+..+...+++.+|-+ .|..+.+.+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhcccc
Confidence 9999999999999988642 211222 1234445555555666555432 24445566666
Q ss_pred cCCHHHHHHHHH
Q 004856 587 AGHMDEARELVK 598 (727)
Q Consensus 587 ~g~~~~A~~~~~ 598 (727)
.++.......+.
T Consensus 251 ~~d~~~~~~~L~ 262 (445)
T 4b4t_P 251 KSDEAKWKPVLS 262 (445)
T ss_dssp HSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 666555444443
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.83 E-value=50 Score=38.59 Aligned_cols=61 Identities=13% Similarity=-0.112 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 609 WGPLLSACKMHSETELAELTAEKLISMEPENAG-----NYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 609 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
|..++..+.+++.++.+.+..+.+++..+.+.. .|..+.+.+...|++++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 444445555666666666666666553322211 3445555566666666666655544443
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.27 E-value=88 Score=31.48 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=8.0
Q ss_pred hhcCCChHHHHHHHhc
Q 004856 278 YSKLASLEDAKMLFDK 293 (727)
Q Consensus 278 ~~~~g~~~~A~~~~~~ 293 (727)
.++.|+.+-+..+++.
T Consensus 219 A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 219 AAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555555555543
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.14 E-value=51 Score=26.78 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=39.1
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHH
Q 004856 599 DMPFKPDARVWGPLLSACKMHSETELAELTAEKLISMEPENAGNYVLLS 647 (727)
Q Consensus 599 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 647 (727)
.+.+-|++.+..+-+.+|++.+|+..|+++++-+...-.+....|-.++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3457799999999999999999999999999988875543455566554
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.97 E-value=69 Score=26.37 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=41.3
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 004856 535 RPDLITFLGLLTACVNAGL---VEEGRIIFKEMKESYGYEPSQEHYASMVNLLGRAGHMDEARELVKDM-PFKPDA 606 (727)
Q Consensus 535 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 606 (727)
.|+..|-..+..++.+... ..+++.+++.+... +-.-.....-.|.-++.|.|++++|+++.+.+ ...|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4555555555566665543 34566666666654 21112344445666777777777777777766 555654
No 274
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.55 E-value=21 Score=32.97 Aligned_cols=24 Identities=4% Similarity=-0.154 Sum_probs=13.1
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCC
Q 004856 107 SKFGEYEKTLLVYKQMALQSMYPA 130 (727)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~~p~ 130 (727)
++.|+.+....+++.+...|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 445566655555555555554444
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.85 E-value=36 Score=34.57 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhhHHHH-
Q 004856 540 TFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS--QEHYASMVNLLGRAGHMDEARELVKDM----PFKPDARVWGPL- 612 (727)
Q Consensus 540 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l- 612 (727)
+...+..-|.+.|++++|.+.+.++... ...+. ...+-.+++.+...+++..+...+.++ ...++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 5666777777888888888888877765 22222 456667777777777777777777766 112222211111
Q ss_pred -HHH--HHHcCCHHHHHHHHHHHHc
Q 004856 613 -LSA--CKMHSETELAELTAEKLIS 634 (727)
Q Consensus 613 -l~~--~~~~g~~~~A~~~~~~~~~ 634 (727)
-.+ +...+++..|-..|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 111 3456677777776666655
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.62 E-value=76 Score=27.93 Aligned_cols=48 Identities=10% Similarity=0.014 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 004856 622 TELAELTAEKLIS--MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDR 669 (727)
Q Consensus 622 ~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 669 (727)
...+..+|..+.. ++-.-+..|...+..+...|++++|.++++.-.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344444444433 22333344444444444444444444444443333
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.52 E-value=45 Score=33.82 Aligned_cols=99 Identities=8% Similarity=-0.059 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCChHH--H
Q 004856 471 SVNTAIFISYAKCGCIEMAGELFDEEKID----SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQ---SDVRPDLIT--F 541 (727)
Q Consensus 471 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t--~ 541 (727)
.+...+.+.|.++|+++.|.+.|.++... ..-+..+-.++..+...+++..+...+++... .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35567888899999999999999985432 22345777788888899999999999888754 222222211 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 004856 542 LGLLTACVNAGLVEEGRIIFKEMKESYG 569 (727)
Q Consensus 542 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 569 (727)
..-+..+...+++..|-+.|-+....+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1112234457889999999988887643
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.01 E-value=70 Score=28.69 Aligned_cols=26 Identities=4% Similarity=-0.184 Sum_probs=15.7
Q ss_pred HHcCCCchHHHHHHHHHHhCCCCCCc
Q 004856 106 LSKFGEYEKTLLVYKQMALQSMYPAE 131 (727)
Q Consensus 106 ~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (727)
.++.|+.+.+..+++.+...|..++.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 35567776666666666666555543
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.01 E-value=1.3e+02 Score=28.15 Aligned_cols=57 Identities=9% Similarity=-0.053 Sum_probs=26.5
Q ss_pred HHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC
Q 004856 70 NLIDSYANLGLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130 (727)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 130 (727)
+.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+. .+.+.|..++
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~ 89 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDS 89 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCC
Confidence 34444555677776666666533332221122333334555554333 3334455444
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.26 E-value=1e+02 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=15.9
Q ss_pred HHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCC
Q 004856 275 LSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGF 314 (727)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 314 (727)
+..+.+.+..+....+.+.+..+|...-...+.++.+.+.
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3333333333333333333333444333344444444443
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.45 E-value=63 Score=29.02 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhh--HHHHHHHhcccCChhHHHHHHHHHHHhcCCCChhH--HhHHHHHhhc
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGT--LINLLRSTVELKSLELGRIVHCVAVVSDFCKDLSV--NTALLSMYSK 280 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 280 (727)
+...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ....+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566777777677766666665544321 112334444455554 3444455554443211 1223334445
Q ss_pred CCChHHHHHHHhcCC
Q 004856 281 LASLEDAKMLFDKMS 295 (727)
Q Consensus 281 ~g~~~~A~~~~~~~~ 295 (727)
.|+.+-...+++...
T Consensus 89 ~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 89 HRSPTCLRALLDSAA 103 (241)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCC
Confidence 666666666666543
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.53 E-value=26 Score=32.34 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=32.7
Q ss_pred HHHHHhCCCchhHHHHHHHHHhCCCCCChhh-------HHHHHHHhc--ccCChhHHHHHHHHHH
Q 004856 205 ISLAVQNGKSEKSFELFKLMRMEGAEFDSGT-------LINLLRSTV--ELKSLELGRIVHCVAV 260 (727)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 260 (727)
+...++.|+.+....+++.+.+.|..++... .+.+..++. +.|+.+-++.+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445567788877777777777666555332 233333332 5677766666665543
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.17 E-value=1.2e+02 Score=26.51 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=42.6
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 004856 469 LSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTAC 548 (727)
Q Consensus 469 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 548 (727)
+..+-...+.++++.|..+....+.+.+. .++...-...+.++.+.|.. ++...+.++.. .++...-...+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALK--DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 33444444455555555333333333333 45554444455555555543 23444444442 35555555555666
Q ss_pred HhcCCHHHHHHHHHHhHH
Q 004856 549 VNAGLVEEGRIIFKEMKE 566 (727)
Q Consensus 549 ~~~g~~~~a~~~~~~~~~ 566 (727)
...+. .++...+..+.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 66555 334444444443
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.87 E-value=77 Score=29.71 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=5.8
Q ss_pred cCCChHHHHHHHhc
Q 004856 280 KLASLEDAKMLFDK 293 (727)
Q Consensus 280 ~~g~~~~A~~~~~~ 293 (727)
..|+.+-+..+++.
T Consensus 138 ~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 138 MLNDVSIVSYFLSE 151 (285)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HcCCHHHHHHHHhC
Confidence 34444444444433
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.15 E-value=1.3e+02 Score=26.49 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 004856 487 EMAGELFDEEKIDSKDI---ITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFK 562 (727)
Q Consensus 487 ~~A~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 562 (727)
+.+...|.....-.-|. ..|-..+..+ ..+...++.++|..|...||--. +.-|......+...|++.+|..+|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444454433323344 3444444433 23446688888888888877665 4456777777788888888888888
Q ss_pred HhHHhcCCCCC
Q 004856 563 EMKESYGYEPS 573 (727)
Q Consensus 563 ~~~~~~~~~p~ 573 (727)
.-.+. +-.|-
T Consensus 140 ~GI~~-~A~P~ 149 (202)
T 3esl_A 140 LGAEN-NCRPY 149 (202)
T ss_dssp HHHHT-TCBSH
T ss_pred HHHHc-CCccH
Confidence 87776 66664
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.85 E-value=97 Score=31.98 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHhcCCCCCc-chHHHH-------HHHHHcCCCchHHHHHHHHHHhC
Q 004856 65 LILSSNLIDSYANLGLLSLSQQVFNSITSPNS-LLYGTI-------LKNLSKFGEYEKTLLVYKQMALQ 125 (727)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~n~l-------i~~~~~~g~~~~a~~~~~~m~~~ 125 (727)
..++|.|++.|...+.++.|.++..+..-|.. .+-+-. -+.+.-.++|.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67889999999999999999999998865532 333332 24556688999999998887654
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.55 E-value=1.5e+02 Score=25.63 Aligned_cols=78 Identities=17% Similarity=0.063 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHH
Q 004856 500 SKDIITWNSMISAYAKHGDWSQCFKLYTQMKQSDVRPDLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYAS 579 (727)
Q Consensus 500 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 579 (727)
.++...-...+.++.+.++. ++...+.++.. .++...-...+.++...|. +++...+..+... ++..+-..
T Consensus 118 d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~ 188 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARKV 188 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHH
Confidence 34444434444455555443 23333444432 3455555555555555554 3344444444432 34444444
Q ss_pred HHHHHHh
Q 004856 580 MVNLLGR 586 (727)
Q Consensus 580 li~~~~~ 586 (727)
.+.++.+
T Consensus 189 A~~aL~~ 195 (201)
T 3ltj_A 189 AVNYLET 195 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.82 E-value=2.6e+02 Score=27.88 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=110.0
Q ss_pred HhhcCCCchh--hHHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCc
Q 004856 57 ILHGLHQNLI--LSSNLIDSYANLGLLSLSQQVFNSITSP---NSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPAE 131 (727)
Q Consensus 57 ~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 131 (727)
++.|..++.. ...+.+...++.|+.+-+..+++.-... +..-++.|. ..++.|+.+- .+.+.+.|..|+.
T Consensus 34 l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~ga~~~~ 108 (437)
T 1n11_A 34 LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH-CAARIGHTNM----VKLLLENNANPNL 108 (437)
T ss_dssp HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH-HHHHHTCHHH----HHHHHHHTCCTTC
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH-HHHHCCCHHH----HHHHHhCCCCCCC
Confidence 5667665532 2334566667788988888888765433 222333443 3345666543 3344445655543
Q ss_pred cc--HHHHHHHhhccCChhHHHHHHHHHHHHcCCCch--hHHHHHHHhhhccCCCChhhhhhh-ccCCCCCc---ccHHH
Q 004856 132 DT--YPFVIRSCSCLLDFISGEKIHAQVVKLGFDSFD--DVGDALVEFYIKCDGGFENEKGMI-QRKFKDLK---SRWNS 203 (727)
Q Consensus 132 ~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~~~g~~~~a~~~-~~~~~~~~---~~~~~ 203 (727)
.. -.+.+...+..|+.+..+.++ +.+...+. ....+.+...++. |..+-++.+ +....++. ..++.
T Consensus 109 ~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~ 182 (437)
T 1n11_A 109 ATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKY--GKVRVAELLLERDAHPNAAGKNGLTP 182 (437)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCSSCCCH
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence 32 122344445667766555444 33433221 1122334444555 888777777 55443332 22333
Q ss_pred HHHHHHhCCCchhHHHHHHHHHhCCCCCChhhH--HHHHHHhcccCChhHHHHHHHHHHHhcCCCChh--HHhHHHHHhh
Q 004856 204 LISLAVQNGKSEKSFELFKLMRMEGAEFDSGTL--INLLRSTVELKSLELGRIVHCVAVVSDFCKDLS--VNTALLSMYS 279 (727)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~ 279 (727)
+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.++ .+++.|..++.. .....+...+
T Consensus 183 -L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 183 -LHVAVHHNNL----DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYGGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp -HHHHHHTTCH----HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred -HHHHHHcCCH----HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3444556664 455666666655544321 22344455566665444 444555433321 1122333445
Q ss_pred cCCChHHHHHHHhcCC
Q 004856 280 KLASLEDAKMLFDKMS 295 (727)
Q Consensus 280 ~~g~~~~A~~~~~~~~ 295 (727)
..|+.+-...+++.-.
T Consensus 254 ~~g~~~~v~~Ll~~~~ 269 (437)
T 1n11_A 254 QEGHAEMVALLLSKQA 269 (437)
T ss_dssp HTTCHHHHHHHHTTTC
T ss_pred HCCCHHHHHHHHhcCC
Confidence 6677776666665543
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.47 E-value=1.4e+02 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=9.9
Q ss_pred HccCChhHHHHHHhcCC
Q 004856 76 ANLGLLSLSQQVFNSIT 92 (727)
Q Consensus 76 ~~~g~~~~A~~~f~~~~ 92 (727)
+..|+.+....+++.-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 34566666666665443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.24 E-value=1.5e+02 Score=24.70 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=33.7
Q ss_pred HHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 004856 625 AELTAEKLIS--MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGLK 672 (727)
Q Consensus 625 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 672 (727)
+..+|..+.. +.-.-+..|...+..+...|++++|.++++.-.+.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6667777765 34445667777788888888888888888776666543
No 291
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.68 E-value=2.1e+02 Score=26.31 Aligned_cols=248 Identities=10% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCChhHHhHHHHHhhcCCChHHHHHHHhcCCCCCeehHHHHHHHHHhcCCchHHHHHHHHHH--HcCCCCC
Q 004856 256 HCVAVVSDFCKDLSVNTALLSMYSKLASLEDAKMLFDKMSDKDRVVWNIMISAYYQSGFPKESLELLMCMV--RSGFRAD 333 (727)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~ 333 (727)
...+++.=-.++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|....+..-+-... ..--.++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~ 104 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKS 104 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCC
Q ss_pred hhhHHHHHHHhhcCC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 004856 334 LFTAIAAVSSISTMK--NIEWGKQMHANVLRNGSDYQVSVHNSLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYV 411 (727)
Q Consensus 334 ~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 411 (727)
...-...+.++...+ +......+...+.+.--.++..+-...+.+..+.|+.+....+.+.+.+++...-...+.++.
T Consensus 105 ~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q ss_pred hcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHH
Q 004856 412 THD-QSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAG 490 (727)
Q Consensus 412 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 490 (727)
+.+ ...++...+..+.. .++...-...+.++.+.|+......+...+.... +....+.++.+.|. ..+.
T Consensus 185 ~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~------vr~~a~~aL~~i~~-~~~~ 254 (280)
T 1oyz_A 185 INKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT------VYDDIIEAAGELGD-KTLL 254 (280)
T ss_dssp HHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS------CCHHHHHHHHHHCC-GGGH
T ss_pred hhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc------HHHHHHHHHHhcCc-hhhh
Q ss_pred HHHHhccCCCCCHHHHHHHHHHH
Q 004856 491 ELFDEEKIDSKDIITWNSMISAY 513 (727)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~li~~~ 513 (727)
..+.++....++...-...+..+
T Consensus 255 ~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 255 PVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHh
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.91 E-value=1.3e+02 Score=26.58 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=12.1
Q ss_pred HHHHHHHccCChhHHHHHHhcCC
Q 004856 70 NLIDSYANLGLLSLSQQVFNSIT 92 (727)
Q Consensus 70 ~li~~~~~~g~~~~A~~~f~~~~ 92 (727)
+.+...++.|+++-+..+++.-.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCHHHHHHHHHcCC
Confidence 34444555566655555555444
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.39 E-value=1.9e+02 Score=25.13 Aligned_cols=92 Identities=16% Similarity=0.012 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 004856 433 VDFVTIINILPACVNIGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISA 512 (727)
Q Consensus 433 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 512 (727)
++...-...+.++...++.+....+...+ -.++..+-...+.++++.|..+....+..-+. .++...-...+.+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~--d~~~~vr~~a~~a 166 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALK--DEDGWVRQSAADA 166 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 44444444445555544433222222211 23455555556666666666443333333343 5666555566666
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 004856 513 YAKHGDWSQCFKLYTQMKQ 531 (727)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~ 531 (727)
+.+.+. .++...+.++.+
T Consensus 167 L~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 167 LGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHCS-HHHHHHHHHHHH
T ss_pred HHHhCc-hhHHHHHHHHHh
Confidence 776665 455556666554
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.81 E-value=1.4e+02 Score=26.49 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=5.7
Q ss_pred cCCChHHHHHHHh
Q 004856 280 KLASLEDAKMLFD 292 (727)
Q Consensus 280 ~~g~~~~A~~~~~ 292 (727)
+.|+.+-+..+++
T Consensus 118 ~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 118 QFGHTSIVAYLIA 130 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHh
Confidence 3444444444444
No 295
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=37.53 E-value=1.1e+02 Score=28.12 Aligned_cols=14 Identities=0% Similarity=-0.135 Sum_probs=6.2
Q ss_pred HccCChhHHHHHHh
Q 004856 76 ANLGLLSLSQQVFN 89 (727)
Q Consensus 76 ~~~g~~~~A~~~f~ 89 (727)
++.|+++....+++
T Consensus 21 ~~~g~~~~v~~Ll~ 34 (273)
T 2pnn_A 21 VAQSNCQELESLLP 34 (273)
T ss_dssp HHTTCSSTTTTHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444443
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.93 E-value=1.9e+02 Score=24.42 Aligned_cols=47 Identities=11% Similarity=-0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHHc--cCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 004856 625 AELTAEKLIS--MEPENAGNYVLLSNIYAAAGKWNGVAKMRTFLRDRGL 671 (727)
Q Consensus 625 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 671 (727)
+..+|..+.. +.-.-+..|...+..+...|++.+|.++++.-.+.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4555666654 3444556667777777777777777777776666544
No 297
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.63 E-value=2.2e+02 Score=25.09 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=27.4
Q ss_pred HHHHhcccCChhHHHHHHHHHHHhcCCC---------ChhHHhHHHHHhhcCCChHHHHHHHhc
Q 004856 239 LLRSTVELKSLELGRIVHCVAVVSDFCK---------DLSVNTALLSMYSKLASLEDAKMLFDK 293 (727)
Q Consensus 239 ll~~~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~ 293 (727)
.+...+..|+.+.+..+.+.+++.|..+ |..-.+ -+...++.|+.+-+..+++.
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhc
Confidence 3444455566666666666666665432 222222 23344455666665555544
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.30 E-value=1.1e+02 Score=29.09 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKT 399 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 399 (727)
...++.-|...|+.++|...++++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567788888899999999999887663
No 299
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.01 E-value=3e+02 Score=26.10 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCChhH--HhHHHHHhhcCCChHHHHHHHhcCC----CCCeehHHHHHHHHHhcCCchHHHHHHHHHH
Q 004856 253 RIVHCVAVVSDFCKDLSV--NTALLSMYSKLASLEDAKMLFDKMS----DKDRVVWNIMISAYYQSGFPKESLELLMCMV 326 (727)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 326 (727)
..+.+.+++.|..++... ..+-+...+..|..+....+++.-. .+|..-++.|..+ ++.|+. ++.+.+.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~----~iv~~Ll 293 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLK----KIAELLC 293 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCH----HHHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCH----HHHHHHH
Confidence 345555677776554321 2233445566788877777776422 1232223344333 445554 3444556
Q ss_pred HcCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC
Q 004856 327 RSGFRADLFTAIAAVSSISTMKNIEWGKQMHANVLRNGSDYQ 368 (727)
Q Consensus 327 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 368 (727)
+.|..+|..+ .+...++.|+.+ +.+.+++.|-.+|
T Consensus 294 ~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 294 KRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp TTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 6777777655 233333445443 4455566665555
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.80 E-value=3.8e+02 Score=30.39 Aligned_cols=32 Identities=13% Similarity=-0.201 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHc-cCCCC
Q 004856 608 VWGPLLSACKMHSETELAELTAEKLIS-MEPEN 639 (727)
Q Consensus 608 ~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~p~~ 639 (727)
-|..++..+-+++-++-+.+..+.+++ ..++|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 445555667777777777777777776 33433
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.78 E-value=2.3e+02 Score=24.76 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=40.1
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHhCCC
Q 004856 406 MIKGYV---THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGAL-----EHVKYLHGYSMKLGLN 467 (727)
Q Consensus 406 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-----~~a~~~~~~~~~~~~~ 467 (727)
+|+++. +-.+.+.|+-.+-+|.+.| .|....-..++.+....|.- ..+...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 444443 5689999999999999999 77666666667677666642 2333444555555543
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.83 E-value=72 Score=26.65 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKT---VVSWSSMIKGYVTHDQ--SLEALRLFSEMKLEGVEVDF 435 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 435 (727)
.+.++.-|...|+.++|.+.++++..+. .+....+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567777888888888888888887652 2334445555554322 34566777777776654443
No 303
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.67 E-value=1.1e+02 Score=28.42 Aligned_cols=18 Identities=6% Similarity=-0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHccCChhHHHH
Q 004856 69 SNLIDSYANLGLLSLSQQ 86 (727)
Q Consensus 69 ~~li~~~~~~g~~~~A~~ 86 (727)
.+.+...+..|+.++..+
T Consensus 16 ~~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDG 33 (285)
T ss_dssp ------------------
T ss_pred HHHHHHHhhcCCCCCccc
Confidence 344444455555544444
No 304
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.09 E-value=1.5e+02 Score=25.82 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCCCH--hhHH-----HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchHHHHHHHHHh
Q 004856 590 MDEARELVKDMPFKPDA--RVWG-----PLLSACKMHSETELAELTAEKLISMEPENAGNYVLLSNIYAA 652 (727)
Q Consensus 590 ~~~A~~~~~~~~~~p~~--~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 652 (727)
++.|+.+++.++-.-+. .... ..+..|.+.|.+++|++++++..+..+.+...-.-|..+-.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 46677777766322221 1111 223448888888888888888887666555544444444333
No 305
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=31.49 E-value=2.2e+02 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=15.5
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHhCCCCCC
Q 004856 196 DLKSRWNSLISLAVQNGKSEKSFELFKLMRMEGAEFD 232 (727)
Q Consensus 196 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 232 (727)
+|..-++.|. ..+..|+. ++++.+.+.|..++
T Consensus 55 ~~~~g~t~L~-~Aa~~g~~----~~v~~Ll~~g~~~~ 86 (285)
T 3d9h_A 55 DAVSDWSPMH-EAAIHGHQ----LSLRNLISQGWAVN 86 (285)
T ss_dssp SSCCSCCHHH-HHHHTTCH----HHHHHHHHTTCCSC
T ss_pred CCccCCCHHH-HHHHcCCH----HHHHHHHHCCCCCC
Confidence 3333344443 34555664 34455555665554
No 306
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.47 E-value=1.4e+02 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=12.1
Q ss_pred HcCCCchHHHHHHHHHHhCCCCCC
Q 004856 107 SKFGEYEKTLLVYKQMALQSMYPA 130 (727)
Q Consensus 107 ~~~g~~~~a~~~~~~m~~~g~~p~ 130 (727)
++.|+.+.+..+++.+...|..++
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcc
Confidence 445555555555555555444433
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.28 E-value=2e+02 Score=23.01 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 004856 372 HNSLIDMYCECEDLNCARKIFDSVKTKT---VVSWSSMIKGYVTHDQ--SLEALRLFSEMKLEGVEVDFV 436 (727)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 436 (727)
.+.++.-|...|+.++|.+.++++..+. .+....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4567788888999999999999987652 2344455555555432 356778888888777555443
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.00 E-value=1.7e+02 Score=25.02 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=8.1
Q ss_pred HHHHHHHHHhCCCCC
Q 004856 354 KQMHANVLRNGSDYQ 368 (727)
Q Consensus 354 ~~~~~~~~~~g~~~~ 368 (727)
.++.+.+++.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455555556655444
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.65 E-value=1.1e+02 Score=29.85 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 004856 376 IDMYCECEDLNCARKIFDS 394 (727)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~ 394 (727)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3344556666666666654
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.51 E-value=79 Score=30.84 Aligned_cols=16 Identities=0% Similarity=0.077 Sum_probs=8.0
Q ss_pred HHhcCCHHHHHHHHhc
Q 004856 379 YCECEDLNCARKIFDS 394 (727)
Q Consensus 379 ~~~~g~~~~A~~~~~~ 394 (727)
.++.|+.+-+.-+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3444555555555544
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.25 E-value=2.4e+02 Score=23.48 Aligned_cols=53 Identities=8% Similarity=0.132 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 520 SQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
+++.++|..|..+|+--. +.-|......+...|++.+|.++|+.-.+. +-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 447888888888887665 445677777788888999999888887776 66664
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.24 E-value=75 Score=30.34 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCchHhHHHHH
Q 004856 403 WSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA--LEHVKYLHGYSMKLGLNSLSSVNTAI 476 (727)
Q Consensus 403 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (727)
.+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.|+-+.......+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 567888898999999999999988632111 12334444555555433 34566677777777765554444433
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.58 E-value=1.4e+02 Score=24.91 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKD---IITWNSMISAYAKHGD--WSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 537 (727)
.+.++.-|...|+.++|.+.++++. .|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~--~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567777888899999999999887 452 2334444455554322 3456677777776664443
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.55 E-value=2.2e+02 Score=25.00 Aligned_cols=54 Identities=11% Similarity=-0.030 Sum_probs=25.9
Q ss_pred HHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC
Q 004856 72 IDSYANLGLLSLSQQVFNSIT----SPNSLLYGTILKNLSKFGEYEKTLLVYKQMALQSMYPA 130 (727)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~~~----~~~~~~~n~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 130 (727)
+...++.|+++....+++.-+ .++..-++.|..+ +..|+.+ +++.+.+.|..++
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCC
Confidence 444556677777776665433 2333334444333 3444433 3334444454444
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.33 E-value=2.7e+02 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 004856 406 MIKGYV---THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA 450 (727)
Q Consensus 406 li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 450 (727)
+|+++. +-.+.+.|+-.+-+|++.|-.|....-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 455554 468999999999999999988877766666666665553
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.87 E-value=1.2e+02 Score=31.21 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChh--HH-HHHHHHHHhcCCHHHHHHHHHhC
Q 004856 538 LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQE--HY-ASMVNLLGRAGHMDEARELVKDM 600 (727)
Q Consensus 538 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~-~~li~~~~~~g~~~~A~~~~~~~ 600 (727)
...++.+++.|.+.+.++.|..+..+..--....++.. .| -.+...+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45688888888888999999888877641000011211 12 23456666788888888888765
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.61 E-value=1.7e+02 Score=25.84 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=13.4
Q ss_pred HHHHHHcCCCchHHHHHHHHH
Q 004856 102 ILKNLSKFGEYEKTLLVYKQM 122 (727)
Q Consensus 102 li~~~~~~g~~~~a~~~~~~m 122 (727)
.+...++.|+.+....+++.-
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHhc
Confidence 355556677777777666553
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.27 E-value=2.1e+02 Score=25.86 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 004856 509 MISAYAKHGDWSQCFKLYTQMKQS--DVRP----DLITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQEHYASMVN 582 (727)
Q Consensus 509 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 582 (727)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+.+. . .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHH
Confidence 345666677777777777665431 1221 11111222222222222223333444442 1 344555566678
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 004856 583 LLGRAGHMDEARELVKDM 600 (727)
Q Consensus 583 ~~~~~g~~~~A~~~~~~~ 600 (727)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888888888888887554
No 319
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.08 E-value=3.4e+02 Score=23.86 Aligned_cols=36 Identities=8% Similarity=-0.010 Sum_probs=20.7
Q ss_pred HhhcCCCchh--hHHHHHHHHHccCChhHHHHHHhcCC
Q 004856 57 ILHGLHQNLI--LSSNLIDSYANLGLLSLSQQVFNSIT 92 (727)
Q Consensus 57 ~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~ 92 (727)
++.|..++.. ...+.+...+..|+.+-+..+++.-.
T Consensus 31 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68 (237)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 5666554432 22344555566788777777776543
No 320
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.04 E-value=3e+02 Score=23.24 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCh
Q 004856 520 SQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPSQ 574 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 574 (727)
+++.++|..|...||--. +.-|......+...|++.+|.++|+.-.+. +-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 336678888888887665 445666677777888888888888887776 666653
No 321
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.82 E-value=89 Score=25.59 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=7.7
Q ss_pred HcCCCchHHHHHHHH
Q 004856 107 SKFGEYEKTLLVYKQ 121 (727)
Q Consensus 107 ~~~g~~~~a~~~~~~ 121 (727)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 445555555555544
No 322
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.89 E-value=1.6e+02 Score=30.31 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHccCCCCcchHHHHHHHHHhcCChhHHH
Q 004856 621 ETELAELTAEKLISMEPENAGNYVLLSNIYAAAGKWNGVA 660 (727)
Q Consensus 621 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 660 (727)
..+.|...|.++..+.|.+...|+.|+-+....|+.-+|.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 3444444555555555544444444444444444444433
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.63 E-value=2.3e+02 Score=24.98 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCCChhh--HHHHHHHhhcCCChHHHHHHHHHHHHhCCC
Q 004856 321 LLMCMVRSGFRADLFT--AIAAVSSISTMKNIEWGKQMHANVLRNGSD 366 (727)
Q Consensus 321 ~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 366 (727)
+++.+.+.|..++... -.+.+...+..++.+.+..+++.+.+.|..
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 4444455565554221 123444455666777666666777766643
No 324
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.62 E-value=2e+02 Score=26.01 Aligned_cols=29 Identities=7% Similarity=-0.197 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 004856 640 AGNYVLLSNIYAAAGKWNGVAKMRTFLRD 668 (727)
Q Consensus 640 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 668 (727)
+......+..+.+.|+-++|.++|=+.+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 33444455566666777777666555443
No 325
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.46 E-value=3.7e+02 Score=23.74 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=41.8
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCC
Q 004856 405 SMIKGYV---THDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNIGA-----LEHVKYLHGYSMKLGL 466 (727)
Q Consensus 405 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~ 466 (727)
-+|+++. +-.+.+.|+-.+-+|++.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3455554 468999999999999999988877777777777666553 2334444444555554
No 326
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.29 E-value=1.7e+02 Score=23.73 Aligned_cols=14 Identities=0% Similarity=-0.147 Sum_probs=6.2
Q ss_pred hcCCHHHHHHHHhc
Q 004856 381 ECEDLNCARKIFDS 394 (727)
Q Consensus 381 ~~g~~~~A~~~~~~ 394 (727)
+.|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34444444444433
No 327
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.04 E-value=3.7e+02 Score=24.05 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 004856 520 SQCFKLYTQMKQSDVRPD-LITFLGLLTACVNAGLVEEGRIIFKEMKESYGYEPS 573 (727)
Q Consensus 520 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 573 (727)
+++..+|..|...||--. +.-|......+...|++.+|..+|+.-.+. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 467788888888887665 445667777778888888888888887776 66664
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.32 E-value=1.8e+02 Score=23.85 Aligned_cols=41 Identities=5% Similarity=-0.063 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 004856 304 IMISAYYQSGFPKESLELLMCMVRSGFRADLFTAIAAVSSI 344 (727)
Q Consensus 304 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 344 (727)
.++..+...+..-.|.++++.+.+.+...+..|....|..+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 34444444444445555555555544444444443333333
No 329
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.13 E-value=3.2e+02 Score=21.82 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 004856 473 NTAIFISYAKCGCIEMAGELFDEEKIDSKD---IITWNSMISAYAKHGD--WSQCFKLYTQMKQSDVRPD 537 (727)
Q Consensus 473 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 537 (727)
.+.++.-|...|+.++|.+.++++. .|. ......+..++-+.++ .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~--~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567777888999999999999987 452 2334445555555432 3567777888877665443
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.78 E-value=1.2e+02 Score=22.90 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.2
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 004856 383 EDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEA 419 (727)
Q Consensus 383 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 419 (727)
...+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766665544
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.73 E-value=7.9e+02 Score=27.75 Aligned_cols=124 Identities=13% Similarity=0.063 Sum_probs=75.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhc
Q 004856 374 SLIDMYCECEDLNCARKIFDSVKTKTVVSWSSMIKGYVTHDQSLEALRLFSEMKLEGVEVDF------VTIINILPACVN 447 (727)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~ 447 (727)
.++..+...|..+-|.++..-++. ++..--.+..+|...|++++|...|++.- .|+..+. .....++....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e- 891 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH- 891 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTT-
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccc-
Confidence 366777888999988887766664 54444457788999999999999998864 2332211 11111111100
Q ss_pred CCChHHHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCHHHHHHHHHh----ccCCCCC--HHHHHHHHHHHHHcC
Q 004856 448 IGALEHVKYLHGYSMKLGLNSLSSVNTAIFISYAKCGCIEMAGELFDE----EKIDSKD--IITWNSMISAYAKHG 517 (727)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~~--~~~~~~li~~~~~~g 517 (727)
........|..++..+-+.+.++.+.++-+. +....++ ...|+.+..+.+..|
T Consensus 892 -----------------~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 -----------------HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -----------------TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -----------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0112334677888888888888887766654 2211111 246777777766544
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.62 E-value=1e+02 Score=23.30 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=30.0
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHcCCCchHHH
Q 004856 79 GLLSLSQQVFNSITSPNSLLYGTILKNLSKFGEYEKTL 116 (727)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~a~ 116 (727)
.+.+.|+++++.++.+....|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788889999888888888899999887767655443
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.52 E-value=4.6e+02 Score=25.16 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 004856 373 NSLIDMYCECEDLNCARKIFDSVKTK---TVVSWSSMIKGYVT-HDQSLEALRLFSEMKLEGVEVDFVTIINILPACVNI 448 (727)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 448 (727)
..++.-|...|+.++|.+.++++..| ..+....+..++-+ ....+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred C----ChHHHHHHHHHHHH----hCCCchHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChH
Q 004856 449 G----ALEHVKYLHGYSMK----LGLNSLSSVNTAIFISYAKCGCIEMAGELFDEEKIDSKDIITWNSMISAYAKHGDWS 520 (727)
Q Consensus 449 ~----~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 520 (727)
. +...+...+..+.. .|.-|-......+...+... ..-......++..+.+....+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~----------------g~~~~fl~~vl~~l~~~~g~~ 158 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPL----------------GKAASLLLEILGLLCKSMGPK 158 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHH----------------TCHHHHHHHHHHHHHHHHCHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcc----------------chHHHHHHHHHHHHHHHcCHH
Q ss_pred HHHHHHHH
Q 004856 521 QCFKLYTQ 528 (727)
Q Consensus 521 ~A~~~~~~ 528 (727)
.+.++|++
T Consensus 159 ~l~~~~~~ 166 (339)
T 1ug3_A 159 KVGTLWRE 166 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Done!