BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004857
(727 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/719 (53%), Positives = 477/719 (66%), Gaps = 86/719 (11%)
Query: 48 GTETSRNPRIDDTNSKNAGLEDVASVSAASQSDVSRAESRMRKKQEEQKYQGRIMMQQY- 106
+++ N + + N++ A ED ++S S S SRMR+ QE+Q+ QGR M QY
Sbjct: 273 ASQSFTNAQTERLNARQASHED-NNLSVFGASPPSSVASRMRRNQEDQQSQGRRMPPQYT 331
Query: 107 PSAQQGFQYQVQGVQGQAVS----------------LGMNNAHNA--------------- 135
PS+ YQVQ Q +S + H+
Sbjct: 332 PSS-----YQVQASSPQQMSYPRIGGTQDMMQSLPKIATGEVHSTFQSPHGLAPPPMYTS 386
Query: 136 -GTYMPSGNPFY-PSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPS-QGPVPMPFDA 192
YM S +PFY +FQ SG ++ QYN GGY S + P +++GYPS + VPMP+D
Sbjct: 387 TAAYMTSLSPFYHQNFQSSG--MFVPQYNYGGYPPASGIVPQYMSGYPSHEATVPMPYDI 444
Query: 193 TSGSS-FN---IRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
+S SS +N + S+G+ IP + VDP +QYFQ
Sbjct: 445 SSTSSGYNNPRLLPGVSSSGQNIPSL--------------------VDPFQLQYFQQAQV 484
Query: 249 DAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQN-LQSSLNGGPSISNPRKVGMP 307
DAY Q S G +K+ YM + L S L+ G + +PR +G
Sbjct: 485 DAYAPPFQSSTDSFG----------QKDQQAVGYMANHEPLNSPLSPGYGLQSPRHMG-- 532
Query: 308 VGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGST-SQLGLRHEMRL-PQGLNRNTGIY- 364
Y+ PG+ VM Q+P SP+ASPV+PSSPVG S G R E R QG +RNTGIY
Sbjct: 533 --NYFAVPPGVRVMPQYPGSPLASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYP 590
Query: 365 SGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQK 424
GWQG R +D K+HSFL+ELKS NA+K ELSDIAGR+VEFSVDQHGSRFIQQK
Sbjct: 591 GGWQGNRG-GASSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQK 649
Query: 425 LEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 484
LEHCS EEK SVF EVLP ASKLMTDVFGNYVIQKF EHG+P QR+EL ++L GQ++ LS
Sbjct: 650 LEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLS 709
Query: 485 LQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFI 544
LQMYGCRVIQKALEVI++ QK++L+ ELDG+V++CVRDQNGNHVIQKCIE +PA +I F+
Sbjct: 710 LQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFV 769
Query: 545 ISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQH 604
I+AFRGQVATLSTHPYGCRVIQR+LEHCSD+++ CI+DEILESAFALA DQYGNYVTQH
Sbjct: 770 IAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQH 829
Query: 605 VLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEEN 664
VLERGK ER QI+ KL G +VQMSQHKYASNVVEKCLE+ D+ ERE LIEEI+G+SEE+
Sbjct: 830 VLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEED 889
Query: 665 DNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
++LL MMKDQ+ANYVVQK+LE ++ RE L+ R+++H +L+KYTYGKHIVARFEQL+
Sbjct: 890 NHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQLF 948
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/568 (52%), Positives = 366/568 (64%), Gaps = 54/568 (9%)
Query: 155 GVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHI 214
VY QY G Y + + P F+ GYPS G VP+ F + + S G + H
Sbjct: 336 AVYSPQYGYGPY---TNMIPQFMPGYPSHGSVPV----VVSPDFIPQLSGPSAGSVV-HG 387
Query: 215 GSTQH-QKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSS 273
G Q+ +K Y G Q F DP++MQY Q FG + + N A S
Sbjct: 388 GEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFGQMEPLAPR--------NHTNAPESQ 436
Query: 274 KKEPIVAAYMGDQNLQSSLNGGPSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPV 333
K +P + GPS SN + GM V YYG P MG+M Q+ + + P+
Sbjct: 437 KDDPKFLRQIR----------GPSNSNMARPGMGVN-YYGIQPNMGIMVQYLPTHLGPPL 485
Query: 334 LPSSPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKS 393
P G Y GWQ Q + EG + +FLEELKS
Sbjct: 486 SP--------------------GHVPYVEAYPGWQPQGSLEGA---NGPRLCNFLEELKS 522
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
++F+LSDI G IVEFS DQHGSRFIQQKLE+C EEK +VF+E+LPHA KLMTDVFG
Sbjct: 523 GKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFG 582
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
NYVIQKFFE+G+ QRKELA++L+GQ++PLSLQMYGCRVIQKAL+VIE Q+ +L ELD
Sbjct: 583 NYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELD 642
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573
G VMRCVRDQNGNHVIQKCIE +PA+K+ F++ AFRGQV++LS HPYGCRVIQR+LE CS
Sbjct: 643 GQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCS 702
Query: 574 DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKY 633
+ Q + I +EILES L++DQYGNYVTQHVLE+G S ER +I KL+G IVQ+S HK+
Sbjct: 703 HDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKF 762
Query: 634 ASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRE 693
ASNV+EKCLEYG ER+L+I+EI G E ++LL+MMKDQY NYVVQKI E C R
Sbjct: 763 ASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRL 822
Query: 694 TLISRIRVHCDALKKYTYGKHIVARFEQ 721
TL SR+R+H ALKKYTYGKHIV+R EQ
Sbjct: 823 TLFSRVRMHASALKKYTYGKHIVSRLEQ 850
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGNYVI 457
F L G++ S+ +G R IQ+ LE CS + + + +E+L L D +GNYV
Sbjct: 672 FMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVT 731
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG--- 514
Q E G+ ++R+ + KL G ++ LSL + VI+K LE ++ ++ E+ G
Sbjct: 732 QHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDE 791
Query: 515 ---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
++ ++DQ GN+V+QK E A++ + S R + L + YG ++ R+ +
Sbjct: 792 SYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQP 851
Query: 572 CSDEQQ 577
+E Q
Sbjct: 852 SIEENQ 857
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 296/613 (48%), Positives = 375/613 (61%), Gaps = 35/613 (5%)
Query: 116 QVQGVQGQAVSLGMNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPP 175
Q++G QG A + G + A Y +P Y + P+ A + +Q Y+ P
Sbjct: 370 QMRGSQGSAYNSG---SGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYS------PM 420
Query: 176 FVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFV 235
+ + G M G SF ++S I +G+ + GH S
Sbjct: 421 YENASATLGYSAMD-SRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHP-----SHLA 474
Query: 236 DPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGG 295
DP++ QY + + NA L ++ + I AY+G Q Q L
Sbjct: 475 DPMYHQYARF----SENADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGL--- 527
Query: 296 PSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQLGLRHE--MRL 353
P K G P Y G P G +P SP+A +P+S + S + R E MR
Sbjct: 528 -----PYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPM-RRGEVNMRY 581
Query: 354 PQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSV 413
P TG G ++ + ++ S LEE KS+ + FELS+IAG +VEFS
Sbjct: 582 PAATRNYTGGVMG-----SWHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSS 636
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
DQ+GSRFIQQKLE + +EK V++E++P A LMTDVFGNYVIQKFFEHG P QR+EL
Sbjct: 637 DQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELG 696
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
EKL+ VLPLSLQMYGCRVIQKA+EV++L QK Q+V ELDGHVMRCVRDQNGNHV+QKCI
Sbjct: 697 EKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCI 756
Query: 534 ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALA 593
ECVP E IEFIIS F G V TLSTHPYGCRVIQRVLEHC + +++EIL + L
Sbjct: 757 ECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLT 816
Query: 594 QDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELL 653
QDQYGNYV QHVLE GK ERT I+ +LAGKIVQMSQ K+ASNVVEKCL +G ERELL
Sbjct: 817 QDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELL 876
Query: 654 IEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGK 713
+ E+LG ++EN+ L MMKDQ+ANYVVQK+LE C+++ RE +++RI+VH +ALKKYTYGK
Sbjct: 877 VNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGK 936
Query: 714 HIVARFEQLYGEG 726
HIVAR E+L G
Sbjct: 937 HIVARVEKLVAAG 949
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 62/332 (18%)
Query: 339 VGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQK 398
+T + + +E +P+ L T ++ + Q+ FE H Q+
Sbjct: 650 TATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFE----------HGL-------PPQR 692
Query: 399 FELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
EL + + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+V+
Sbjct: 693 RELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVV 752
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-VIELHQKSQLVLELDGHV 516
QK E + + + G V+ LS YGCRVIQ+ LE +S+++ E+ V
Sbjct: 753 QKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTV 812
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI----------- 565
+DQ GN+V+Q +E ++ II G++ +S + V+
Sbjct: 813 SMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEE 872
Query: 566 -------------------------------QRVLEHCSDEQQGQCIVDEILESAFALAQ 594
Q+VLE C D+QQ + I+ I AL +
Sbjct: 873 RELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETC-DDQQRELILTRIKVHLNALKK 931
Query: 595 DQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
YG ++ V + + ER L L +V
Sbjct: 932 YTYGKHIVARVEKLVAAGERRMALQSLPQPLV 963
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 293/581 (50%), Positives = 368/581 (63%), Gaps = 44/581 (7%)
Query: 161 YNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTS------VSTGEGIP-- 212
Y + YALN A+ + PM +D S F+ + VS+G+ +
Sbjct: 402 YCLNNYALNPAVASMMANQLGNNNFAPM-YDNVSALGFSGMDSRHHGRGFVSSGQNLSES 460
Query: 213 -HIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADP 271
++G ++ G GL QS VDP++ QY D+ + L DP
Sbjct: 461 RNLGRFSNRMMGGGAGL--QSHMVDPMYNQY-----ADSLDL--------------LNDP 499
Query: 272 SSKKEPIV-AAYMGDQNLQSSLNGG--PSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSP 328
S + + ++YM LQ + G P K G P Y G P G +P SP
Sbjct: 500 SMDRNFMGGSSYMDMLELQRAYLGAQKSQYGVPYKSGSPNSHSYYGSPTFGSNMSYPGSP 559
Query: 329 IASPVLPSSPVGSTSQLGLRHE--MRLPQGL-NRNTGIYSGWQGQRTFEGQRTFEDSKKH 385
+A +P+S + S + R E MR P N + G+ W +F+ +
Sbjct: 560 LAHHGMPNSLMSPYSPM-RRDEVNMRFPSATRNYSGGLMGSWHMDASFD------EGFGS 612
Query: 386 SFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS 445
S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E++P A
Sbjct: 613 SMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQAL 672
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
LMTDVFGNYVIQKFFEHG P QR+ELAEKL VLPLSLQMYGCRVIQKA+EV++L QK
Sbjct: 673 VLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQK 732
Query: 506 SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGCRVI
Sbjct: 733 IKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVI 792
Query: 566 QRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
QRVLEHC D +++EIL + LAQDQYGNYV QHVLE GK ERT I+ +LAGKI
Sbjct: 793 QRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKI 852
Query: 626 VQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILE 685
VQMSQ K+ASNVVEKCL +G ERELL+ E+LG ++EN+ L MMKDQ+ANYVVQK+LE
Sbjct: 853 VQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 912
Query: 686 KCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 726
C+++ RE +++RI+VH ALKKYTYGKH+VAR E+L G
Sbjct: 913 TCDDQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAG 953
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/505 (54%), Positives = 335/505 (66%), Gaps = 34/505 (6%)
Query: 227 GLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQ 286
G LQS DP++ QY D+ + L DPS + +YM
Sbjct: 482 GTGLQSHMADPMYHQY-----ADSLDL--------------LNDPSMDVNFMGNSYMNML 522
Query: 287 NLQSSLNGG--PSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQ 344
LQ + G P K G P G P G +P SP+A +LP+S V S
Sbjct: 523 ELQRAYLGAQKSQYGVPYKSGSPNSHTDYGSP---TFGSYPGSPLAHHLLPNSLVSPCSP 579
Query: 345 LGLRHE--MRLPQGL-NRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFEL 401
+ R E MR P N G+ W + + + S LEE KS+ + FEL
Sbjct: 580 M-RRGEVNMRYPSATRNYAGGVMGSWHMDASLD------EGFGSSMLEEFKSNKTRGFEL 632
Query: 402 SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFF 461
++IAG +VEFS DQ+GSRFIQQKLE +++EK V++E++PHA LMTDVFGNYVIQKFF
Sbjct: 633 AEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFF 692
Query: 462 EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVR 521
EHG P QR+ELA+KL VLPLSLQMYGCRVIQKA+EV++L QK ++V ELDGHVMRCVR
Sbjct: 693 EHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVR 752
Query: 522 DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCI 581
DQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGCRVIQRVLEHC D +
Sbjct: 753 DQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKV 812
Query: 582 VDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKC 641
+DEI+ + LAQDQYGNYV QHVLE GK ERT I+ +LAGKIVQMSQ K+ASNVVEKC
Sbjct: 813 MDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKC 872
Query: 642 LEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV 701
L +G ERE L+ E+LG ++EN+ L MMKDQ+ANYVVQK+LE C+++ RE ++ RI+V
Sbjct: 873 LTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKV 932
Query: 702 HCDALKKYTYGKHIVARFEQLYGEG 726
H +ALKKYTYGKHIVAR E+L G
Sbjct: 933 HLNALKKYTYGKHIVARVEKLVAAG 957
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 246/500 (49%), Positives = 328/500 (65%), Gaps = 36/500 (7%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQ 289
L SP +DP + QY A A + H L + + D +++ ++ A QN Q
Sbjct: 521 LHSPVMDPHYSQYLHTASSTA--APIDHSLIRNNFGTSNGDTANEYLAMLLA----QNRQ 574
Query: 290 SSLNGGPSISNPRKVGMP---VGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQLG 346
G + +N R P +G Y G P SP ++
Sbjct: 575 QL--GNLNAANSRFFESPSYDLGNMYLG-------NHLP-----------SPSKNSRNF- 613
Query: 347 LRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAG 406
MR+ Q + + G QG + T E S LE K++ + ELS+I G
Sbjct: 614 --QNMRMSQSASMMKVPFGGLQGSSHVDIGSTAE----ASLLEGFKNNKTRSLELSEIVG 667
Query: 407 RIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSP 466
++EFS+DQ+GSRFIQQKLE + EEK ++F E+LP+ LMTDVFGNYVIQKFFEHG+
Sbjct: 668 HVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTT 727
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGN 526
QRKELAE++ G VL LSLQMYGCRVIQKALEV+EL Q++++V ELDG VM+CV DQNGN
Sbjct: 728 KQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGN 787
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL 586
HVIQKCIE +P + I+FIIS+F G+V LSTHPYGCRVIQRVLEH D + + I++EI+
Sbjct: 788 HVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIM 847
Query: 587 ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGD 646
+S LAQDQYGNYV QH+++ GK +ER++I++KLAG+IV+MSQ K+ASNVVEKCL +G
Sbjct: 848 DSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGG 907
Query: 647 TAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDAL 706
ER++L+ E+LG ++EN+ L MMKD + NYVVQK+LE C+++ ++SRI+VH +AL
Sbjct: 908 PEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNAL 967
Query: 707 KKYTYGKHIVARFEQLYGEG 726
K+YTYGKHIVAR E+L G
Sbjct: 968 KRYTYGKHIVARVEKLITTG 987
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 28/309 (9%)
Query: 353 LPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSD-IAGRIVEF 411
LP G T ++ + Q+ FE + Q+ EL++ + G ++
Sbjct: 702 LPYGRTLMTDVFGNYVIQKFFE-----------------HGTTKQRKELAEQVTGHVLAL 744
Query: 412 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471
S+ +G R IQ+ LE E++ + KE+ K + D GN+VIQK E D +
Sbjct: 745 SLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQF 804
Query: 472 LAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQ 530
+ G+VL LS YGCRVIQ+ LE I+ + ++++E + V +DQ GN+VIQ
Sbjct: 805 IISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQ 864
Query: 531 KCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL--- 586
I+ P E+ E II+ GQ+ +S + V+++ L E++ Q +V+E+L
Sbjct: 865 HIIQHGKPHERSE-IINKLAGQIVKMSQQKFASNVVEKCLTFGGPEER-QVLVNEMLGYT 922
Query: 587 ---ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLE 643
E A+ +D +GNYV Q VLE ILS++ + + ++ Y ++V + +
Sbjct: 923 DENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEK 982
Query: 644 YGDTAEREL 652
T ER +
Sbjct: 983 LITTGERRI 991
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/345 (56%), Positives = 257/345 (74%), Gaps = 4/345 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 885 YGCRVIQRILEHCTAEQT-LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 678
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 679 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1004 VVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/345 (56%), Positives = 257/345 (74%), Gaps = 4/345 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC+ EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I+S
Sbjct: 885 YGCRVIQRILEHCTAEQT-LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 678
++ GK++ +SQHK+ASNVVEKC+ + AER LLI+E+ Q++ + L MMKDQYANY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 679 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1004 VVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/338 (57%), Positives = 249/338 (73%), Gaps = 5/338 (1%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
LE+ ++ +L D+A IVEFS DQHGSRFIQQKLE +A EK VF E+L A
Sbjct: 1095 LLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYS 1154
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS 506
LMTDVFGNYVIQKFFE G+P+Q+ L ++ G VL L+LQMYGCRVIQKALE I Q+
Sbjct: 1155 LMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQ 1214
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
++V ELDGHV++CV+DQNGNHV+QKCIECV ++FII+AF+GQV +LSTHPYGCRVIQ
Sbjct: 1215 EIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQ 1274
Query: 567 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
R+LEHC+ EQ I+DE+ E L QDQYGNYV QHVLE GK +++ +++ + GK++
Sbjct: 1275 RILEHCTAEQT-TPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVL 1333
Query: 627 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLL-VMMKDQYANYVVQKILE 685
+SQHK+ASNVVEKC+ + ER LI+E+ NDN L VMMKDQYANYVVQK+++
Sbjct: 1334 VLSQHKFASNVVEKCVTHATRGERTGLIDEVC---TFNDNALHVMMKDQYANYVVQKMID 1390
Query: 686 KCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
+ L+++IR H AL+KYTYGKHI A+ E+ Y
Sbjct: 1391 VSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEKYY 1428
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 567 RVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
R+LE +++ + ++ +QDQ+G+ Q LER + E+ + S++
Sbjct: 1094 RLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAY 1153
Query: 627 QMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 686
+ + + V++K E+G ++ L ++ G ++L + Y V+QK LE
Sbjct: 1154 SLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKG------HVLQLALQMYGCRVIQKALES 1207
Query: 687 CNEKLRETLISRIRVHCDALKKYTYGKHIVAR 718
+ + ++ ++ + H K G H+V +
Sbjct: 1208 ISPEQQQEIVHELDGHVLKCVKDQNGNHVVQK 1239
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/343 (53%), Positives = 252/343 (73%), Gaps = 2/343 (0%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 1007 CRVIQRILEHCLPDQT-LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1065
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 680
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 1066 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 1125
Query: 681 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1126 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/343 (53%), Positives = 252/343 (73%), Gaps = 2/343 (0%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
CRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++++
Sbjct: 1007 CRVIQRILEHCLPDQT-LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 1065
Query: 622 AGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANYVV 680
G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANYVV
Sbjct: 1066 RGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVV 1125
Query: 681 QKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
QK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1126 QKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1168
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 4/345 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 PDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC EQ I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPEQT-LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 678
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANY 1126
Query: 679 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1127 VVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1171
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 253/345 (73%), Gaps = 4/345 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILS 619
YGCRVIQR+LEHC +Q I++E+ + L QDQYGNYV QHVLE G+ ++++I++
Sbjct: 1008 YGCRVIQRILEHCLPDQT-LPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVA 1066
Query: 620 KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSE-ENDNLLVMMKDQYANY 678
++ G ++ +SQHK+ASNVVEKC+ + ER +LI+E+ ++ + L MMKDQYANY
Sbjct: 1067 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANY 1126
Query: 679 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLY 723
VVQK+++ R+ ++ +IR H L+KYTYGKHI+A+ E+ Y
Sbjct: 1127 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1171
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/335 (49%), Positives = 230/335 (68%), Gaps = 5/335 (1%)
Query: 391 LKSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLM 448
L +N Q+ FELSDI G +V FS DQHGSRFIQQKL + EE+ +VF+E+ + +LM
Sbjct: 383 LFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLM 442
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
D+FGNYV+QK+FE G+ Q++ L ++ G V LSLQMYGCRV+QKA+E I + QL
Sbjct: 443 MDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQL 502
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
+ ELDGHV+ CV DQNGNHVIQK IEC+ ++FI+ A R Q+ LS HPYGCRVIQR
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRA 562
Query: 569 LEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
+EHC E+ + I++E+L L QDQYGNYV QH+L G ++ I + ++ +
Sbjct: 563 IEHCHSER--KLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFL 620
Query: 629 SQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDN-LLVMMKDQYANYVVQKILEKC 687
S HK+ASNVVE+C+ Y +R ++ +I+ + EN + L++MMKD+YANYV+QK+L+
Sbjct: 621 SCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDAS 680
Query: 688 NEKLRETLISRIRVHCDALKKYTYGKHIVARFEQL 722
E+ R+ LIS I H LKK+TYGKH++ E+
Sbjct: 681 PEEERDLLISYIYPHISVLKKFTYGKHLIMSVERF 715
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 43/189 (22%)
Query: 567 RVLEHCSDEQQGQCIVDEILESAFALAQDQYG---------------------------- 598
RVL +Q + +IL + + DQ+G
Sbjct: 379 RVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSC 438
Query: 599 ---------NYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE 649
NYV Q E G ++ +LS++ G + +S Y VV+K +EY
Sbjct: 439 LQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEH 498
Query: 650 RELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKY 709
+ LI+E+ G ++L + DQ N+V+QK +E + + ++ +R L +
Sbjct: 499 QVQLIQELDG------HVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAH 552
Query: 710 TYGKHIVAR 718
YG ++ R
Sbjct: 553 PYGCRVIQR 561
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/336 (45%), Positives = 220/336 (65%), Gaps = 15/336 (4%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
L DI G +EF DQHGSRFIQ++L A EK +F E+ A +L DVFGNYVIQKF
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
FE GS Q+ L ++ G + LSLQMY CRVIQKALE I+ +Q+ +LVLEL V++ +
Sbjct: 596 FEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMI 655
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQC 580
+DQNGNHVIQK IE +P EK+ FI+S+ G + LSTH YGCRVIQR+LE S E Q +
Sbjct: 656 KDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQ-ES 714
Query: 581 IVDEILESAFALAQDQYGNYVTQHVLERGKSYERT------QILSKLAGKIVQMSQHKYA 634
I++E+ + L QDQYGNYV Q+VL++ + + +I+ +A +V+ S+HK+A
Sbjct: 715 ILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFA 774
Query: 635 SNVVEKCLEYGDTAERELLIEEILGQS-------EENDNLLVMMKDQYANYVVQKILEKC 687
SNVVEK + YG +++L+I +IL + E++ +++M+KDQ+ANYV+QK++
Sbjct: 775 SNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVS 834
Query: 688 NEKLRETLISRIRVHCDALKK-YTYGKHIVARFEQL 722
+ ++ ++ IR + D L K + G +A E+L
Sbjct: 835 EGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKL 870
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 179/315 (56%), Gaps = 6/315 (1%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I+ F DQHG R++Q+ LE + +VF E P+ + LM D FGNY+ QK FEH S
Sbjct: 348 ILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEA 407
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLELDGHVMRCVRDQNGN 526
QR + + +++P+S M+G R +QK ++++ Q S +V L +V+ +D NGN
Sbjct: 408 QRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGN 467
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL 586
HVIQKC+ E +FI A +STH +GC V+QR +H S Q Q +V+ I+
Sbjct: 468 HVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQ-LVEHIV 526
Query: 587 ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGD 646
A L QD +GNYV Q+VLE I+S K+ +S K++SNV+EKC+ +
Sbjct: 527 PHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAP 586
Query: 647 TAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDAL 706
A +E LI E++ + +L +++D +ANYV+Q L+ + K R L+ RI+ ++
Sbjct: 587 AAIKEKLISELMDE----KHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSI 642
Query: 707 KKYTYGKHIVARFEQ 721
K G+ I+++ E+
Sbjct: 643 KNTPCGRRILSKLER 657
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 2/220 (0%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFE 462
IA ++V S + HG+R +Q+ ++ S+ +++S L P+ L D+ GN+VIQK
Sbjct: 416 IAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLN 475
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
S + + + + + L +S +GC V+Q+ + Q QLV + H + V+D
Sbjct: 476 KFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQD 535
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 582
GN+V+Q +E E IIS F +V LST + V+++ + + + I
Sbjct: 536 AFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLIS 595
Query: 583 DEILESAF-ALAQDQYGNYVTQHVLERGKSYERTQILSKL 621
+ + E L +D + NYV Q L+ +R +++ ++
Sbjct: 596 ELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERI 635
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 183/323 (56%), Gaps = 11/323 (3%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQK 459
++S+ G + + DQHG RF+Q E SA + + +F EV+PH +LM D FGNY++QK
Sbjct: 195 KVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQK 254
Query: 460 FFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGH 515
+ + +QR ++ + GQ++ +SL YG RV+Q+ +E I+ ++ LV L
Sbjct: 255 LLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPG 314
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ +RD NGNHVIQ+C++C+ E EFI ++TH +GC V+Q+ + + S
Sbjct: 315 FLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGL 374
Query: 576 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 635
Q+ + +V EI ++ LAQD YGNY Q VLE +L++L G V++S K++S
Sbjct: 375 QREK-LVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSS 433
Query: 636 NVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETL 695
++VE+CL + + R ++ E++ + ++++D YAN+V+Q L L TL
Sbjct: 434 HMVERCLTHCPES-RPQIVRELISVPHFD----ILIQDPYANFVIQAALAVTKGSLHATL 488
Query: 696 ISRIRVHCDALKKYTYGKHIVAR 718
+ IR H L+ Y K I +R
Sbjct: 489 VEVIRPH-SILRNNPYCKRIFSR 510
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 4/179 (2%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S+ +F D ++ + +HG +Q+ + + S ++ + E+ ++ L D +
Sbjct: 336 STEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPY 395
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
GNY +Q E + +L G + LS+Q + ++++ L + Q+V EL
Sbjct: 396 GNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCP-ESRPQIVREL 454
Query: 513 DG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
H ++D N VIQ + ++ R + L +PY R+ R L
Sbjct: 455 ISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIFSRNL 512
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL--PHA 444
F+ EL+ +A L+ + G VE S+ + S +++ L HC E + + +E++ PH
Sbjct: 402 FVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHC-PESRPQIVRELISVPHF 460
Query: 445 SKLMTDVFGNYVIQ 458
L+ D + N+VIQ
Sbjct: 461 DILIQDPYANFVIQ 474
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 182/322 (56%), Gaps = 11/322 (3%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ DI G + + DQHG RF+Q+ + ++ + + +F EV+ H +LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 461 FEHGSPDQRKEL---AEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV-LELDGHV 516
+ + +QR ++ A + GQ++ +SL YG RV+Q+ +E I ++ LV L L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ ++D NGNHVIQ+C++C+ E +FI A ++TH +GC V+Q+ + + S Q
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAY-SMRQ 509
Query: 577 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 636
Q + ++ EI ++ LAQD +GNY Q V+E +L++L G VQ+S K++S+
Sbjct: 510 QREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSH 569
Query: 637 VVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLI 696
+VE+CL + + +++ E L D LL +D YAN+V+Q L L +L+
Sbjct: 570 MVERCLMHCPESRPQIVRE--LVSVPHFDQLL---QDPYANFVIQAALAATKGPLHASLV 624
Query: 697 SRIRVHCDALKKYTYGKHIVAR 718
IR H L+ Y K I +R
Sbjct: 625 EVIRPH-SILRNNPYCKRIFSR 645
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 10/182 (5%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S+ KF E + +HG +Q+ + + +++ + E+ ++ L D F
Sbjct: 471 STEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF 530
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH---QKSQLV 509
GNY +Q E P + +L G + LS+Q + ++++ L +H + Q+V
Sbjct: 531 GNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCL----MHCPESRPQIV 586
Query: 510 LELDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
EL H + ++D N VIQ + ++ R + L +PY R+ R
Sbjct: 587 RELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIFSR 645
Query: 568 VL 569
L
Sbjct: 646 NL 647
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEV--LPHA 444
F+ EL+ +A L+ + G V+ S+ + S +++ L HC E + + +E+ +PH
Sbjct: 537 FVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHC-PESRPQIVRELVSVPHF 595
Query: 445 SKLMTDVFGNYVIQ 458
+L+ D + N+VIQ
Sbjct: 596 DQLLQDPYANFVIQ 609
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 182/326 (55%), Gaps = 10/326 (3%)
Query: 397 QKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK+ +++ G+I + DQHG RF+Q+ + +F E++ + S+LM D FGNY
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNY 329
Query: 456 VIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
++QK E + DQR ++ + G ++ +S M+G R +QK +E + ++ +++
Sbjct: 330 LVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISA 389
Query: 513 DGH-VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
H ++ +++ NGNHV+Q+C++ + +F+ A L+T +GC V+Q+ L +
Sbjct: 390 LKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGY 449
Query: 572 CSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQH 631
S+ +Q Q +V EI +A L+QD +GNYV Q+V E + +IL +L G ++S
Sbjct: 450 -SEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQ 508
Query: 632 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKL 691
K +SNVVEKCL+ D R +I E++ L +M D Y NYV+Q L++ +
Sbjct: 509 KCSSNVVEKCLKLADDKHRARIIRELINYGR----LDQVMLDPYGNYVIQAALKQSKGNV 564
Query: 692 RETLISRIRVHCDALKKYTYGKHIVA 717
L+ I+++ +L+ YGK +++
Sbjct: 565 HALLVDAIKLNISSLRTNPYGKKVLS 590
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 189/352 (53%), Gaps = 24/352 (6%)
Query: 374 EGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEK 433
E QR E+S + F + + L G I DQHG RF+Q++L+ ++
Sbjct: 545 EKQRKIEESSR--FADAV---------LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAA 593
Query: 434 VSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493
++F+E + +LMTD FGNY+IQK E + +QR L + + +SL +G R +
Sbjct: 594 DAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRAL 653
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 552
QK +E I+ +++Q+V++ L + ++ +D NGNHVIQKC++ + E +FI A
Sbjct: 654 QKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSC 713
Query: 553 ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVL----ER 608
++TH +GC V+QR L+H + EQ + D++L L D +GNYV Q+++ E+
Sbjct: 714 IDIATHRHGCCVLQRCLDHGTTEQCDN-LCDKLLALVDKLTLDPFGNYVVQYIITKEAEK 772
Query: 609 GKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLL 668
K +I+ L + +++S HK+ SNV+EK L+ +E +L EIL E +
Sbjct: 773 NKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVSEPMIL--EILNNGGET-GIQ 829
Query: 669 VMMKDQYANYVVQKILE---KCNEKLRETLISRIR-VHCDALKKYTYGKHIV 716
++ D Y NYV+Q L+ K N+ L + L + + ++ +GK I+
Sbjct: 830 SLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRII 881
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 124/250 (49%), Gaps = 10/250 (4%)
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
++ +G + L +GCR +QK L+++ + E + + + D GN++IQK +
Sbjct: 562 DQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLL 621
Query: 534 ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALA 593
E V E+ + +S +P+G R +Q+++E +++ Q +VD + L+
Sbjct: 622 EEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLS 681
Query: 594 QDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELL 653
+D GN+V Q L+R K I ++ + ++ H++ V+++CL++G T + + L
Sbjct: 682 KDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNL 741
Query: 654 IEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLR----ETLISRIRVHCDALKKY 709
+++L ++ + D + NYVVQ I+ K EK + ++ ++ L +
Sbjct: 742 CDKLLALVDK------LTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 795
Query: 710 TYGKHIVARF 719
+G +++ +
Sbjct: 796 KFGSNVIEKI 805
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 170/317 (53%), Gaps = 10/317 (3%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
G + DQ+G R++Q+ L+ F E+ +LM D FGNY+ QK F + S
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL---DGHVMRCVRD 522
+Q+ + + ++ + +YG R +Q ++ + +++ L+L++ + C D
Sbjct: 525 REQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC--D 582
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIV 582
NG HV+QKCI P EK+E + + + TL+T+ +GC ++QR L+ + + Q + +V
Sbjct: 583 NNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQER-LV 641
Query: 583 DEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCL 642
+ I++S L Q+ YGNY+ QHVLE +I+ K G I ++S K++SN +E+C+
Sbjct: 642 NSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCI 701
Query: 643 EYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVH 702
+ RE +++E L N+ ++ D YANYV+Q+ L +E + ++ I
Sbjct: 702 RTASPSTREQMLQEFLSFP----NIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHV 757
Query: 703 CDALKKYTYGKHIVARF 719
++ +G+HI+A+
Sbjct: 758 IPKIQNTRHGRHILAKL 774
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 191/359 (53%), Gaps = 22/359 (6%)
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423
+S G R +G +K+ S +L S + D G + + DQ G R +Q+
Sbjct: 211 FSAMGGSRELDGSAKCMKNKEDSL--DLAS-------MVDSYGSVYLMAKDQLGCRLLQK 261
Query: 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV---GQV 480
++ + + + +FKEV+ + +L TD FGNY+IQK E + +QR ++ +L G +
Sbjct: 262 FVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLL 321
Query: 481 LPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAE 539
+ +S+ YG RV+QK +E + ++ LV L + R+ NGNHVI C++
Sbjct: 322 VKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPN 381
Query: 540 KIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGN 599
+FI+ A ++T +GC V+QR + + EQ + +VDEI ++ LAQD +GN
Sbjct: 382 DNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEK-LVDEISRNSLLLAQDPFGN 440
Query: 600 YVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG 659
Y+ Q+++E K +L +L G V+++ K+ S+VVEKCL Y + R ++ E++
Sbjct: 441 YLVQYIIE--KKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYPES-RSQIVNELVS 497
Query: 660 QSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 718
N +++D YANYV+Q L K +R +L+ ++R + + LK Y K I ++
Sbjct: 498 VL----NFGYLLQDPYANYVIQCALSKTKGFVRASLVEKVRRY-ENLKMTPYCKRIFSK 551
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 178/334 (53%), Gaps = 16/334 (4%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 458
++ + I +I+ S DQ S F+QQKL+ S + K ++ ++ LM + FGN+++Q
Sbjct: 358 YDWNVIIDKII-VSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQ 416
Query: 459 KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL----EVIELHQKSQLVLELDG 514
+ FEHG+ Q +++ ++G +L L+ +GC V+QKA+ E I+L +L L +D
Sbjct: 417 RCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDV 476
Query: 515 HVMRCVRDQNGNHVIQKCIEC----VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLE 570
+M HV QK E P + + +A RG+ ++ G V+Q + E
Sbjct: 477 TIMH----HYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFE 532
Query: 571 HCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQ 630
+C ++ + +CI +EI+ +A+ Q+GN+V QH++E G+ + +++ L + V+ S
Sbjct: 533 NCVEKDKRECI-EEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSI 591
Query: 631 HKYASNVVEKCLEYGDTAERELLIEEILGQSEENDN--LLVMMKDQYANYVVQKILEKCN 688
++AS V+EK ++ G L +++I + L+ + DQY NY++Q+I++
Sbjct: 592 DQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQ 651
Query: 689 EKLRETLISRIRVHCDALKKYTYGKHIVARFEQL 722
+ +I+ I+ H +L+ YG+ + E+
Sbjct: 652 PAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEKW 685
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ G+ E +V ++GS +Q E+C ++K +E++ H + +GN+V+Q E+
Sbjct: 510 LRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVEN 569
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-----VIELHQKSQLVLELDGH--- 515
G + K + + L+ + + S+ + +VI+KA++ I L+ K +D
Sbjct: 570 GQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQP 629
Query: 516 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSD 574
++ DQ GN++IQ+ I+ PAEK +I+ + + +L YG +V V + S
Sbjct: 630 LIDIASDQYGNYLIQQIIQLGQPAEK-NLVITHIKKHMVSLRGSKYGQKVAYLVEKWNSQ 688
Query: 575 EQQGQCI 581
+Q I
Sbjct: 689 KQVSSVI 695
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 168/318 (52%), Gaps = 41/318 (12%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVS--VFKEVLPHASKLMTDVFGNYVIQKFFEHGSP 466
++ + DQ G RF+Q+KLE S V +++++ P L+ D FGNY++QK ++ +
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG---------HVM 517
+Q+ L + + V +S+ YG R +QK ++ ++ + Q+ L + G V+
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVD--NEVQIDLIIKGFSQEFTSIEQVV 333
Query: 518 RCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTHPYGCRVIQRVLEHCSDE 575
+ D NGNHVIQKCI K FII A + + T+STH +GC V+Q++L C+ +
Sbjct: 334 TLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQ 393
Query: 576 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGK--SYERTQILSKLAGKIVQMSQHKY 633
Q + V +I++ L DQ+GNY+ Q +L+ + Y ++ ++L+ ++ Q+S K+
Sbjct: 394 QIFKISV-KIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKF 452
Query: 634 ASNVVEKCLE-------------YGDTAERELLIEEILGQSEEND----------NLLVM 670
+SNVVEK ++ G ++R + + + + N NL V+
Sbjct: 453 SSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASDDVINASMNILLTTIDIFTVNLNVL 512
Query: 671 MKDQYANYVVQKILEKCN 688
++D + NY +Q +L+ N
Sbjct: 513 IRDNFGNYALQTLLDVKN 530
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 176/334 (52%), Gaps = 18/334 (5%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
SN + +I G + + DQ G R +Q+ +E + E + ++ H +L D FG
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFG 299
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
NY++QK F+ +QR + L +++ + L YG RV+QK +E ++ Q+ LV
Sbjct: 300 NYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVK 359
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
L + V+D NGNHVIQ C++ + EF++ A A ++ H +GC V+Q +
Sbjct: 360 SGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI 419
Query: 570 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 629
+ Q+ + +V EI ++ L+QD +GNYV Q+++++ S ++L + +++
Sbjct: 420 SNSVGLQRER-LVAEISRNSLHLSQDPFGNYVVQYLIDQQVS--AVKLLVQFRMHYAELA 476
Query: 630 QHKYASNVVEKCL-EYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCN 688
K++S+V+EKCL +Y ++ R ++ E+L N +++D YANYV+Q L
Sbjct: 477 TQKFSSHVIEKCLRKYPES--RAEIVRELLCVP----NFEYLLQDPYANYVIQTALSVTK 530
Query: 689 EKLRETLISRI----RVHCDALKKYTYGKHIVAR 718
+R L++++ ++H K + K I+ +
Sbjct: 531 GPVRAKLVAKVYRYGKLHSSPYCKKIFSKTILKK 564
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 177/349 (50%), Gaps = 9/349 (2%)
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 438
FE + HS E L+ S A + + +I+ F DQ S +QQ+L++ E+ +++
Sbjct: 233 FEKNSVHSGKETLQYS-ATISKWKAMIEQII-FQNDQAASLSLQQQLKNEDIEDNINLIN 290
Query: 439 EVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE 498
+LP + LM + FGN++IQK FE+ + Q + + L V LS+ +G V+QK+LE
Sbjct: 291 TILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSLE 350
Query: 499 VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF----RGQVAT 554
+ + L+ EL + + ++ HV QK E ++ I F +G+
Sbjct: 351 IYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWLQ 410
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
+S G V+Q + E+C ++ + C+ DEI+ + + Q+GN+V QH++E G ++
Sbjct: 411 VSVSEMGSLVVQTIFENCKEKDKRTCL-DEIINNMDQIICGQWGNWVIQHIIEHGSEPDK 469
Query: 615 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLV--MMK 672
+IL+ L ++ S ++YAS VVE+ L + ++EI E + + +
Sbjct: 470 QRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTIFLQEIAS 529
Query: 673 DQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 721
+QY NY+VQ +L+ + ++ H +L+ + YG+ I A E+
Sbjct: 530 NQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRIAALVEK 578
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/453 (25%), Positives = 203/453 (44%), Gaps = 37/453 (8%)
Query: 285 DQNLQSSLNGGPSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQ 344
DQNL + N V + ++G P G++G + +P G
Sbjct: 89 DQNLTGASQIHDGFRNFSSVRVQNNNFHGVSPSPGLLGLQDSF---------NPNGFEEM 139
Query: 345 LGLR-HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNA------- 396
+ + H+ L +N +G F+G FE + L ++ S A
Sbjct: 140 MAFKDHKDFLLDHINEPIKRSPFLRGNDAFKGSLMFEGIRVSQILAAMEGSGASYPDEPK 199
Query: 397 -------QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
+ +I G + + DQ G R +Q+ +E + + +F E++ H +L
Sbjct: 200 INGGLPLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSM 259
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKS 506
D GNY++QK +QR + L +++ + L G RVIQK ++ ++ Q+
Sbjct: 260 DPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQI 319
Query: 507 QLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
LV L+ + V D NG HV+Q C+E + +F++ A A L+TH YGC V+
Sbjct: 320 ALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVL 379
Query: 566 QRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
Q L + Q + +V EI + L+QD +GNYV Q ++++ S +L
Sbjct: 380 QCSLINTVGLQHER-LVAEISRDSLRLSQDPFGNYVVQCLIDQQVS--SVNLLLPFRTHC 436
Query: 626 VQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILE 685
++++ K++S+V+EKCL + E ++ E+L N +++D YANYV+Q L
Sbjct: 437 IELATQKFSSHVIEKCLRKYPESRAE-IVRELLSYP----NFEQLLQDPYANYVIQTALS 491
Query: 686 KCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 718
+R L+ +++ L+ Y K I ++
Sbjct: 492 VTKGAVRARLVEKVK-RFGKLQSNPYCKKIFSK 523
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 13/255 (5%)
Query: 475 KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534
++ G V ++ GCR +QK +E + + LE+ HV+ D GN+++QK +
Sbjct: 213 EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLV 272
Query: 535 CVPAEKIEFIISAFRG---QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF- 590
E+ I+S ++ + + G RVIQ++++ +QQ +V LE F
Sbjct: 273 VSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQ-IALVKSALEPGFL 331
Query: 591 ALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 650
L D G +V Q LE + ++ Q++ H+Y V++ L +
Sbjct: 332 VLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQH 391
Query: 651 ELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYT 710
E L+ EI S L + +D + NYVVQ ++++ + L+ R HC L
Sbjct: 392 ERLVAEISRDS------LRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQK 443
Query: 711 YGKHIVARFEQLYGE 725
+ H++ + + Y E
Sbjct: 444 FSSHVIEKCLRKYPE 458
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 39/329 (11%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 182 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 241
Query: 452 FGNYVIQKFF-------EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY++Q + G ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 242 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 301
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + + Y
Sbjct: 302 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKY 361
Query: 561 GCRVIQRVLEHCS---------------DEQQGQCIVDEILESAFALAQDQYGNYVTQHV 605
GCRV+Q ++E + E+ Q ++ + LA ++Y NY+ QH+
Sbjct: 362 GCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHI 421
Query: 606 LERGK--SYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG---- 659
+ Y I L ++ +SQ K+AS+VVEK + +++EI
Sbjct: 422 VSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIP 481
Query: 660 -QSEENDNLLVMMKDQYANYVVQKILEKC 687
D L +MM Q+ NYVVQ +L C
Sbjct: 482 HPDTGKDALDIMMFHQFGNYVVQCMLTIC 510
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 164/329 (49%), Gaps = 39/329 (11%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 452 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 561 GCRVIQRVLEHCS---------------DEQQGQCIVDEILESAFALAQDQYGNYVTQHV 605
GCRV+Q ++E + E+ Q ++ + LA ++Y NY+ QH+
Sbjct: 360 GCRVVQTIIEKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHI 419
Query: 606 LERGK--SYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG---- 659
+ Y I L ++ +SQ K+AS+VVEK + +++EI
Sbjct: 420 VSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLAEMMDEIFDGYMP 479
Query: 660 -QSEENDNLLVMMKDQYANYVVQKILEKC 687
D L +MM Q+ NYVVQ +L C
Sbjct: 480 HPGTGKDALDIMMFHQFGNYVVQCMLTIC 508
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 22/321 (6%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEH---------CSAEEKVSVFKEVLPHASKLMTD 450
EL+D A +I S R KL C+ EE + L S L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN V+QK F++ S ++ + E++ + + + G QK ++V + +L+
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
+ L ++ DQ GN+V+Q C++ A +F+ A Q ++ YG R ++ L
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVFEAILNQFWVIAQSRYGSRAVRACL 903
Query: 570 EHCS-DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQIL--SKLAGKIV 626
E E+Q + I + LA + G + +++E +Y IL + IV
Sbjct: 904 ESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTYLVE-NMNYPHIPILLTRRFVQDIV 962
Query: 627 QMSQHKYASNVVEKCLEY--GDTAERELLIEEILG-QSEENDNLL--VMMKDQYANYVVQ 681
++ H+ A N + K + GDTA +L+++ IL Q++ N N L ++ + Y +
Sbjct: 963 RVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDLNPNSLEKILFEQTYGPSFIC 1022
Query: 682 KIL--EKCNEKLRETLISRIR 700
K+L E + R+ L S +R
Sbjct: 1023 KLLTHENISASHRQQLQSAVR 1043
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 146/324 (45%), Gaps = 17/324 (5%)
Query: 406 GRIVEFSV--DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
GR FS+ D+ S+ +++ + + E +F ++ +LM D FGN V++
Sbjct: 209 GRGSYFSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGK 268
Query: 464 GSPDQR---KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH---VM 517
S +Q ++ + + + + + G IQ L I +Q+ +D +
Sbjct: 269 CSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVAL 328
Query: 518 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL--EHCSDE 575
+ R+ N +VI C + + ++ ++ GC ++Q+ E +
Sbjct: 329 QLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNH 388
Query: 576 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 635
+ Q ++ E++E A L + +GNYV Q+V+E +E +++KL ++++KY S
Sbjct: 389 EIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGS 448
Query: 636 NVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETL 695
+VV+K L+ + ++++ + G D LL+ D + NYV+Q E +R+ L
Sbjct: 449 HVVQKLLKLRGIDSKLIVVDLLRGI----DTLLL---DPFGNYVIQTAWFVSKEDVRQML 501
Query: 696 ISRIRVHCDALKKYTYGKHIVARF 719
I + ++ +G I+ +
Sbjct: 502 RYYIERNIRLMRCNKFGNKILEKL 525
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 107/246 (43%), Gaps = 18/246 (7%)
Query: 491 RVIQKALE-VIELHQKSQLVLELDGHVM---RCVRDQNGNHVIQKCIECVPAEKIEFIIS 546
RV K LE I + K + + DG ++ + D GN V++ I +E+I I+
Sbjct: 220 RVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVD 279
Query: 547 AFRGQVA---TLSTHPYGCRVIQRVLEHCSDEQQGQC--IVDEILESAFALAQDQYGNYV 601
++ + +P G IQ +L + Q I+D I A L ++ YV
Sbjct: 280 VVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYV 339
Query: 602 TQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAEREL---LIEEIL 658
S + ++L ++ Q++ + ++++C + E+ LI E++
Sbjct: 340 ILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVI 399
Query: 659 GQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVAR 718
+ L + + + NYVVQ ++E N+ + L++++ + L + YG H+V +
Sbjct: 400 EHA------LKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQK 453
Query: 719 FEQLYG 724
+L G
Sbjct: 454 LLKLRG 459
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
++ L HVM D+ ++V + + +K E + L+ YGC + +
Sbjct: 118 IMRLFIHVMT---DKYASYVTIQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALNEI 174
Query: 569 LEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
+ D ++D + +A L+ D YGN+V QHVL+ S I KL G V++
Sbjct: 175 ITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVEL 234
Query: 629 SQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCN 688
S KY S +VE+ LE GD ++++ + ++E L+ + + +Y N+VV K LE N
Sbjct: 235 SFKKYGSYIVERLLEAGDVPMATVVLDLLACKTEM---LIRLARSEYGNFVVCKALELTN 291
Query: 689 EKLRETL 695
E L L
Sbjct: 292 EILTADL 298
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 115/268 (42%), Gaps = 15/268 (5%)
Query: 363 IYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQ 422
I++ G + + D+ ++ L +S+ F + + +++GS+ +Q
Sbjct: 51 IFNFMTGSEDLKDDISVLDTGTLMWMASLMTSDCDYFMV---------ITTNKNGSKTLQ 101
Query: 423 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP 482
KL S + V F+ ++ +MTD + +YV + D+R+ + ++++
Sbjct: 102 -KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQILRYACF 160
Query: 483 LSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKI 541
L+ YGC + + + ++ + + + QL+ + + + D GN V+Q ++ +
Sbjct: 161 LAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCT 220
Query: 542 EFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEI---LESAFALAQDQYG 598
I G LS YG +++R+LE D ++D + E LA+ +YG
Sbjct: 221 RNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVVLDLLACKTEMLIRLARSEYG 279
Query: 599 NYVTQHVLERGKSYERTQILSKLAGKIV 626
N+V LE + L +++
Sbjct: 280 NFVVCKALELTNEILTADLFYGLVNRLM 307
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 49/208 (23%)
Query: 515 HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ--RVLEHC 572
+ M ++NG+ +QK + + F + R + ++ IQ RV +
Sbjct: 86 YFMVITTNKNGSKTLQKLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQ-- 143
Query: 573 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVL-ERGKSYERTQILSKLAGKIVQMSQH 631
+ + + + D+IL A LA DQYG ++ + Y R Q+L +A
Sbjct: 144 --QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVA--------- 192
Query: 632 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKL 691
+N L++ D Y N+VVQ +L+ + +
Sbjct: 193 ---------------------------------NNALLLSNDAYGNFVVQHVLKLRDSRC 219
Query: 692 RETLISRIRVHCDALKKYTYGKHIVARF 719
+ ++ +C L YG +IV R
Sbjct: 220 TRNIADKLCGYCVELSFKKYGSYIVERL 247
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 24/261 (9%)
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRV 492
+F ++ H +LM D +G+ V +K E + +Q + + ++ + + L + +G
Sbjct: 183 IFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHA 242
Query: 493 IQKALEVIELHQKSQLVLELDGHV-MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ 551
IQ + + ++ +E +V + +D + VI C +++
Sbjct: 243 IQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQN 302
Query: 552 VATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYG----------NYV 601
++ GC ++++++ S E + ++ EI+ A L + YG NYV
Sbjct: 303 CYQVAIDQNGCCMLKKLIRQSSRELRDP-LIKEIISIAVRLCGNCYGTLTPKSLLVRNYV 361
Query: 602 TQHVLERGKSYERTQILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ 660
Q++L R K YE T LSK L G VQ+S KY S+VV+KCLE + + R +I E+L
Sbjct: 362 VQYLL-RLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRR-IIAELLS- 418
Query: 661 SEENDNLLVMMKDQYANYVVQ 681
+ D+LLV D Y +YV+Q
Sbjct: 419 --DIDSLLV---DPYGDYVIQ 434
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 13/206 (6%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT-DVFGNYVIQKFFEHGSPD 467
V V HG+ IQ + +EE++S F E L + S L+T DV + VI F SP
Sbjct: 231 VRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPS 290
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNG-- 525
+ L E +V +++ GC +++K + + L+ E+ +R + G
Sbjct: 291 HTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTL 350
Query: 526 --------NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQ 577
N+V+Q + E + G LS YG V+Q+ LE S E
Sbjct: 351 TPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLE--SREFS 408
Query: 578 GQCIVDEILESAFALAQDQYGNYVTQ 603
+ I+ E+L +L D YG+YV Q
Sbjct: 409 SRRIIAELLSDIDSLLVDPYGDYVIQ 434
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG---- 453
++ L I + ++DQ+G +++ + S E + + KE++ A +L + +G
Sbjct: 293 RYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTLTP 352
Query: 454 ------NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
NYV+Q + L++ L G + LS YG V+QK LE E + +
Sbjct: 353 KSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSR-R 411
Query: 508 LVLELDGHVMRCVRDQNGNHVIQ 530
++ EL + + D G++VIQ
Sbjct: 412 IIAELLSDIDSLLVDPYGDYVIQ 434
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 11/183 (6%)
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQC 580
+D +H++Q I E I+ I V L YG +V ++++E C+DEQ +
Sbjct: 160 KDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITR- 218
Query: 581 IVDEILESAFA---LAQDQYGNYVTQHVLERGKSYER-TQILSKLAGKIVQMSQHKYASN 636
++D +LE F L +G + Q ++ S E+ ++ + L + +++ A
Sbjct: 219 VLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHR 278
Query: 637 VVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLI 696
V+ C + L+E I+ N + DQ +++K++ + + +LR+ LI
Sbjct: 279 VILFCFNQFSPSHTRYLLEVIV------QNCYQVAIDQNGCCMLKKLIRQSSRELRDPLI 332
Query: 697 SRI 699
I
Sbjct: 333 KEI 335
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ G V+ S D++GS +Q+ LE + + E+L L+ D +G+YVIQ +
Sbjct: 381 LDGNYVQLSYDKYGSHVVQKCLESREFSSR-RIIAELLSDIDSLLVDPYGDYVIQTAWIV 439
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493
+ + +E L L + CR++
Sbjct: 440 SEVRDKHDDSESFYVDFYQLILWLVFCRIM 469
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 9/206 (4%)
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRV 568
++ L HVM D+ ++V + + +K E + L+ YGC + +
Sbjct: 118 IMRLFIHVMI---DKYASYVAIQGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEI 174
Query: 569 LEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
++ D ++D + +A L+ D YGN+V QHVL+ S I KL G V++
Sbjct: 175 IKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVEL 234
Query: 629 SQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCN 688
S KY S +VE+ LE D ++++ + ++E L+ + + + N+VV K+LE N
Sbjct: 235 SFKKYGSYIVERLLEVRDIPMATIVLDLLACKTEM---LIRLARSENGNFVVCKLLELTN 291
Query: 689 EKLRETLISRIRVHCDALKKYTYGKH 714
+ L L + + L+ Y + H
Sbjct: 292 DILTADLFYSL---VNKLRPYRFLLH 314
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 95/216 (43%), Gaps = 6/216 (2%)
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
+++GS+ +Q KL S + V F ++ +M D + +YV + D+R+ +
Sbjct: 93 NKNGSKSLQ-KLMRMSDDMDVFFFVAIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMY 151
Query: 474 EKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKC 532
+ ++ L L+ YGC + + + E+ + + + +L+ + + + D GN V+Q
Sbjct: 152 DHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHV 211
Query: 533 IECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEI---LESA 589
++ + I G LS YG +++R+LE D ++D + E
Sbjct: 212 LKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLE-VRDIPMATIVLDLLACKTEML 270
Query: 590 FALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKI 625
LA+ + GN+V +LE + L K+
Sbjct: 271 IRLARSENGNFVVCKLLELTNDILTADLFYSLVNKL 306
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 82/210 (39%), Gaps = 47/210 (22%)
Query: 515 HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ--RVLEHC 572
+ M R++NG+ +QK + + F ++ R + + IQ R+ +
Sbjct: 86 YFMVITRNKNGSKSLQKLMRMSDDMDVFFFVAIMRLFIHVMIDKYASYVAIQGMRIFK-- 143
Query: 573 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHK 632
+ + + + D IL A LA+DQYG +++
Sbjct: 144 --QDKRELMYDHILRYALFLARDQYGCIALNEIIK------------------------- 176
Query: 633 YASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLR 692
E D R+ L++ + ++N L++ D Y N+VVQ +L+ + +
Sbjct: 177 ----------ELDDPYYRDELMDIV------SNNALLLSNDAYGNFVVQHVLKLHDSRCT 220
Query: 693 ETLISRIRVHCDALKKYTYGKHIVARFEQL 722
+ ++ +C L YG +IV R ++
Sbjct: 221 GNIADKLCGYCVELSFKKYGSYIVERLLEV 250
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 6/248 (2%)
Query: 431 EEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGC 490
EE + + +L ++L +D GN V+QKFFE+ S ++ + E++ + + + G
Sbjct: 183 EEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGT 242
Query: 491 RVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR 549
QK ++V ++ L+++ L + DQ GN+V Q C+ K F+
Sbjct: 243 WAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLR-FKYPKNTFLFEVMA 301
Query: 550 GQVATLSTHPYGCRVIQRVL--EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLE 607
+ +G R I+ L E+ + EQQ +V I+ ++ LA + G + +L+
Sbjct: 302 RHCCEIGQSRFGARAIRACLENENATFEQQA-LVVASIIINSHLLATNSNGMLLLTWLLD 360
Query: 608 RGKSYERTQILS-KLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDN 666
R ++L+ LA + HK AS ++ K + E L+ + L SE+++
Sbjct: 361 NSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLFFSEKDNV 420
Query: 667 LLVMMKDQ 674
L +++DQ
Sbjct: 421 LTYILQDQ 428
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 575 EQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYA 634
+++ + I +L+ L+ D GN V Q E + +L ++A + + HK
Sbjct: 182 QEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNG 241
Query: 635 SNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILE 685
+ +K + D A E ++ I+ LL DQ+ NYV Q L
Sbjct: 242 TWAAQKII---DVASTEKQMDLIVKHLRPYTALLYF--DQFGNYVAQCCLR 287
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 142/331 (42%), Gaps = 20/331 (6%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 458
F+ + F+ D+ S + + + E +++ ++ +LM D +G+ V+Q
Sbjct: 196 FDYNQCQASFSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQ 255
Query: 459 KFFEHGSPDQRKELAEKLVGQV---LPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
S +Q +L + + Q+ + + + G IQ L I K Q+ +D
Sbjct: 256 LLMRRCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVD-- 313
Query: 516 VMRCVRDQ--NGNH---VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL- 569
V+R V Q NH VI C P ++ ++ +GC ++Q
Sbjct: 314 VVRTVALQLSKSNHAIFVILACFRLFPLH-CRLLLELIVQNCHQIAIDQHGCCLLQLCFN 372
Query: 570 -EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM 628
+ + + Q ++ E + +A L + YGNYV Q+++E Y ++ +L G +
Sbjct: 373 KDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHL 432
Query: 629 SQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCN 688
+++KY S+ V+K L+ R ++I+ + E D LL+ D + NYV+Q
Sbjct: 433 ARNKYGSHAVQKLLKLRWIDSRVIVIDLL----REIDTLLL---DPFGNYVIQTAWFVSK 485
Query: 689 EKLRETLISRIRVHCDALKKYTYGKHIVARF 719
+ +R L I + ++ +G ++ +
Sbjct: 486 DDVRRMLRYHIERNIPMMRCNKFGNKVLEKL 516
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 43/224 (19%)
Query: 539 EKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQ---D 595
E ++ I + G + L PYG V+Q ++ CS EQ Q +VD + + F D
Sbjct: 228 ETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQ-LVDIVTQQMFQFVNICID 286
Query: 596 QYGNYVTQHVL----ERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERE 651
G Q +L ER K + +I+ + +Q+S+ +A V+ C R
Sbjct: 287 SLGTNAIQVLLTCINERAKD-QIPRIVDVVRTVALQLSKSNHAIFVILACFRLFPLHCR- 344
Query: 652 LLIEEILGQS---------------------------------EENDNLLVMMKDQYANY 678
LL+E I+ E N L + + Y NY
Sbjct: 345 LLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNY 404
Query: 679 VVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQL 722
VVQ I+E N L + L+ ++ + L + YG H V + +L
Sbjct: 405 VVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLKL 448
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 23/298 (7%)
Query: 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 478
+F L E+ V + LP +L +D GN VIQK FE+ S R + K
Sbjct: 559 QFDSNSLSTIEMEQLAIVMLDQLP---ELSSDYLGNTVIQKLFENSSNIIRDIMLRKCNK 615
Query: 479 QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIEC-V 536
+ + + G V QK +++ ++ LV + + DQ GN+VIQ ++
Sbjct: 616 YLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGF 675
Query: 537 PAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQC----IVDEILESAFAL 592
P FI + T+ + YG R ++ LE +D QC I I+ + L
Sbjct: 676 PWN--SFIFESVLSHFWTIVQNRYGSRAVRACLE--ADSIITQCQLLTITSLIIVLSPYL 731
Query: 593 AQDQYGNYVTQHVLERGKSYERTQIL-SKLAGK-IVQMSQHKYASNVVEKCLEYGDTAER 650
A D G + +L+ + IL KL K +V++ HK S V K L E
Sbjct: 732 ATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGEEE 791
Query: 651 EL----LIEEILGQSEENDNLLVMMKDQ--YANYVVQKILEK--CNEKLRETLISRIR 700
L +I I +D++L + D+ Y + K+L + +R+ I++IR
Sbjct: 792 ALSKNKIIHAIFDGPISSDSILFQILDEGNYGPTFIYKVLTSRILDNSVRDEAITKIR 849
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 12/200 (6%)
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQR 567
L +D + + D+ G +I I V K E + L+ GC +
Sbjct: 290 LFCAVDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNN 349
Query: 568 VLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQ 627
VL+ + I + + +A L+ D YG +V Q++L T I +L G +
Sbjct: 350 VLQEIRGIYR-DLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFR 408
Query: 628 MSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKC 687
++ + S VVEKCL+ D A R+ ++EE G ++E + M D++ N+VVQ L
Sbjct: 409 LAMERQGSYVVEKCLK-SDFA-RDQVLEEFRGNAKE---WVRMTTDKFGNFVVQSALRVM 463
Query: 688 NEK-----LRETLISRIRVH 702
EK LRE + ++R H
Sbjct: 464 KEKEMRPLLRE-FVEKLRPH 482
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 19/269 (7%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK--EVLPHASK----LMTDVF 452
++ A R EF +++Q + +AE + +FK L + L T+ +
Sbjct: 218 LDMMTCAQRFTEFQ------KYLQDLDTYPTAERESHLFKIGSALTTTKRIFLHLATNQY 271
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
G+ ++ F SP L + L YG +I A+ ++ +K L
Sbjct: 272 GSQALRILFRR-SPSLDHLLFCAVDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLT 330
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572
+ + R + G + ++ + + I LS PYG V+Q +L
Sbjct: 331 YEYTLHLARLETGCLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNIL-IL 389
Query: 573 SDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAG---KIVQMS 629
+ I + + S F LA ++ G+YV + L+ + R Q+L + G + V+M+
Sbjct: 390 QNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLK--SDFARDQVLEEFRGNAKEWVRMT 447
Query: 630 QHKYASNVVEKCLEYGDTAERELLIEEIL 658
K+ + VV+ L E L+ E +
Sbjct: 448 TDKFGNFVVQSALRVMKEKEMRPLLREFV 476
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 10/142 (7%)
Query: 581 IVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEK 640
+ D I A L+ D YGN+V Q VL+ + I+ L G V +S KY S VV+
Sbjct: 190 LFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDV 249
Query: 641 CLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRET-----L 695
LE T E +++ E L + E D L+ + +++Y N++V K L +++ T L
Sbjct: 250 LLE---TKESMVVVVEELMEC-EGDMLMRLARNEYGNFLVCKALRVTQKEMVRTDLFWGL 305
Query: 696 ISRIRVHCDALKKYTYGKHIVA 717
+ +++ + L +++ GK+I +
Sbjct: 306 VHKLKPFHNLL-RWSRGKNIAS 326
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 97/239 (40%), Gaps = 47/239 (19%)
Query: 392 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
K+ + + I R + D++ S +++ + ++K ++++ +L +AS + D
Sbjct: 113 KTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDK 172
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
GN + R +L + + + L LS YG VIQ+ L++ +L K+ +V+
Sbjct: 173 HGNLALNDIITDA---YRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVS 229
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEH 571
L GH + LS YG V+ +LE
Sbjct: 230 LRGHFV------------------------------------DLSFQKYGSYVVDVLLE- 252
Query: 572 CSDEQQGQCIVDEILES----AFALAQDQYGNYVTQHVLE-RGKSYERTQILSKLAGKI 625
++ +V+E++E LA+++YGN++ L K RT + L K+
Sbjct: 253 --TKESMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVTQKEMVRTDLFWGLVHKL 309
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 112/268 (41%), Gaps = 26/268 (9%)
Query: 454 NYVIQKFFEH-GSPDQRK--ELAEKLVGQVL-PLSLQMYGCRVIQKALEVIELHQKSQLV 509
N +I+K H G+ D + L E L G+ P L+ + A +E+ Q L
Sbjct: 559 NSLIKKSLNHKGTSDTQNFGPLPEPLSGREFDPPKLRELRKSIDSNAFSDLEIEQ---LA 615
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVL 569
+ + + D GN ++QK E + ++ + ++ H G Q+++
Sbjct: 616 IAMLDELPELSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMI 675
Query: 570 EHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMS 629
+Q + + + L DQ+GNYV Q VL+ G + + I + +
Sbjct: 676 TMAHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQCVLKFGFPWNQF-IFESIIANFWVIV 734
Query: 630 QHKYASNVVEKCLEYGD--TAERELLIEEILGQSEE------NDNLLV-------MMKDQ 674
Q++Y + V CLE D T E+ +++ ++ E N LLV ++ ++
Sbjct: 735 QNRYGARAVRACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNR 794
Query: 675 Y---ANYVVQKILEKCNEKLRETLISRI 699
+ A + ++I+E C +L I ++
Sbjct: 795 HSILAPRLTKRIVELCGHRLASLTILKV 822
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 115/270 (42%), Gaps = 27/270 (10%)
Query: 386 SFLEELKSSNAQKFELSDIAGRIVEFS-------VDQHGSRFIQQKLEHCSAEEKVSVF- 437
S+ +E+ SN+ K EL +A + S + GSR +Q+ L + V F
Sbjct: 56 SYFKEM-ISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---GKSDDVDAFF 111
Query: 438 -KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+L + TD + +YV + +K L E+++ L L+ +GC +
Sbjct: 112 CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDI 171
Query: 497 L-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+ + + + + QL+ + + +R D +GN V+Q + + I I GQ L
Sbjct: 172 ITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 556 STHPYGCRVIQRVLEHCSDEQQGQ-----CIVDEILESAFALAQDQYGNYVTQHVLERGK 610
S YG +++++LE C D ++ LA++++GN+V L R
Sbjct: 232 SFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMR----LARNEFGNFVVVKAL-RFT 286
Query: 611 SYERTQILSKLAGKI---VQMSQHKYASNV 637
R + L K+ +++ + + SN+
Sbjct: 287 KMSRMDLFWGLVQKLMPFIRLLRRSHGSNI 316
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L+ +GC + ++ D +++ + +A L+ D GN+V QHVL S
Sbjct: 158 LACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCI 217
Query: 615 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 674
I L G+ +++S KY S +VEK LE ++ + + D L+ + +++
Sbjct: 218 HNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVV----VVVELLGCDGDRLMRLARNE 273
Query: 675 YANYVVQKILEKCNEKLRETLISRIRVHCDALKK 708
+ N+VV K LR T +SR+ + ++K
Sbjct: 274 FGNFVVVK-------ALRFTKMSRMDLFWGLVQK 300
Score = 40.4 bits (93), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
Query: 501 ELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIE-FIISAFRGQVATLSTHP 559
EL + + L+ + M V + G+ +QK + ++ ++ F +A + ++T
Sbjct: 69 ELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG--KSDDVDAFFCAAILRRFLHITTDK 126
Query: 560 YGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKS-YERTQIL 618
Y V R + D+ + + + IL A LA DQ+G ++ Y R Q+L
Sbjct: 127 YASYVTIRAMV-VFDKVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLL 185
Query: 619 SKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANY 678
+A +++S + VV+ L D+ + + GQ E + +Y +Y
Sbjct: 186 ELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIE------LSFKKYGSY 239
Query: 679 VVQKI 683
+V+K+
Sbjct: 240 IVEKL 244
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
++ T +G R +Q++L D C IL + D+Y +YVT +
Sbjct: 86 SIVTTKFGSRRVQKLLGKSDDVDAFFCA--AILRRFLHITTDKYASYVTIRAMVVFDKVM 143
Query: 614 RTQILSKLAGKIVQMSQHKYASNVVEKCL-EYGDTAERELLIEEILGQSEENDNLLVMMK 672
+ + ++ + ++ ++ + + + D R+ L+E + N L +
Sbjct: 144 KKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVAS------NALRLSN 197
Query: 673 DQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARF 719
D N+VVQ +L + + + + C L YG +IV +
Sbjct: 198 DASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKL 244
>sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
Length = 641
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ + G++ E +V SR +Q ++ CS EK +F E+ P L ++ + + IQK
Sbjct: 116 IRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKM 175
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
+ S Q L G V PL ++G V++ A + QK +L+ EL
Sbjct: 176 LDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAEL 227
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 464 GSPDQRKELAE---KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
G D+ K ++E K+ G+V +++ RV+Q ++ +K L EL +
Sbjct: 104 GKEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLA 163
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQC 580
++ H IQK ++ +++ IS+ RG VA L H +G V++ H Q Q
Sbjct: 164 SNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAY-HLGSAAQKQE 222
Query: 581 IVDEILESAFALAQDQYGNYVTQHVLERG--KSYERT--QILSKLAGKIVQMSQHKYASN 636
++ E+ Y T+ L +G S E+T I++KL + +++H A
Sbjct: 223 LLAEL--------------YSTELQLFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTA-- 266
Query: 637 VVEKCLEYG---DTAERELLIE 655
+++ LE G T +LLIE
Sbjct: 267 IIQPILEKGIVDHTITHKLLIE 288
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+++ + + + +++ FIQ+ L+ S ++ + + H + L+ VFG+ V++
Sbjct: 152 FTELQPQFLNLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHA 211
Query: 461 FEHGSPDQRKELAEKLVGQVLPL 483
+ GS Q++EL +L L L
Sbjct: 212 YHLGSAAQKQELLAELYSTELQL 234
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 555 LSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYER 614
L+ +GC + ++ D +++ ++ +A L+ D GN+V QHVL S
Sbjct: 158 LACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCI 217
Query: 615 TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQ 674
I L G+ +++S KY S +VEK LE ++ + + D L+ + +++
Sbjct: 218 HNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVV----VVVELLGCDGDRLMRLARNE 273
Query: 675 YANYVVQKILEKCNE 689
+ N+VV K L E
Sbjct: 274 FGNFVVVKALRFTKE 288
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 16/220 (7%)
Query: 415 QHGSRFIQQKLEHCSAEEKVSVF--KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKEL 472
+ GSR +Q+ L + V F +L + TD + +YV + +K L
Sbjct: 91 KFGSRRVQKLL---GKSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKAL 147
Query: 473 AEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQK 531
E+++ L L+ +GC + + + + + + QL+ + + +R D +GN V+Q
Sbjct: 148 YERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQH 207
Query: 532 CIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQ-----CIVDEIL 586
+ + I I GQ LS YG +++++LE C D ++
Sbjct: 208 VLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLM 267
Query: 587 ESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIV 626
LA++++GN+V L K R + L K++
Sbjct: 268 R----LARNEFGNFVVVKALRFTKEM-RMDLFWGLVQKLM 302
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 9/167 (5%)
Query: 554 TLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE 613
++ T +G R +Q++L D C IL + D+Y +YVT +
Sbjct: 86 SIVTTKFGSRRVQKLLGKSDDVDAFFCAA--ILRRFLHITTDKYASYVTIRAMVVFDKVM 143
Query: 614 RTQILSKLAGKIVQMSQHKYASNVVEKCL-EYGDTAERELLIEEILGQSEENDNLLVMMK 672
+ + ++ + ++ ++ + + + D R+ L+E ++ N L +
Sbjct: 144 KKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVVS------NALRLSN 197
Query: 673 DQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKHIVARF 719
D N+VVQ +L + + + + C L YG +IV +
Sbjct: 198 DASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKL 244
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/291 (19%), Positives = 126/291 (43%), Gaps = 20/291 (6%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
I G+I + +R IQ +++ S E++ F+E+ +L + +++KF +
Sbjct: 165 IQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMY 224
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRD 522
GS Q E+ G V + +++ A + L Q++ L EL G+ + +
Sbjct: 225 GSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYK- 283
Query: 523 QNGNH-VIQKCIECVPAEKIEFIISAFR------GQVATLSTHPYGCRVIQRVLEHCSDE 575
+ +H ++K +E P K+E I+ + Q + H +V + +
Sbjct: 284 -SADHPTLEKVLEVQPG-KLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPK 341
Query: 576 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 635
+ + +++ I E+ LA G V H L G +R I+ + + +++ +Y+
Sbjct: 342 LRSE-LIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSH 400
Query: 636 NVVEKCLEYGDTAE--RELLIEEILGQSEENDNLLVMMKDQYANYVVQKIL 684
V+ + D + ++++I E++ +L ++ D+Y V+ +L
Sbjct: 401 LVLLAAFDCIDDTKLVKQIIISEVIS------SLPSIVNDKYGRKVLLYLL 445
>sp|Q15397|K0020_HUMAN Pumilio domain-containing protein KIAA0020 OS=Homo sapiens
GN=KIAA0020 PE=1 SV=3
Length = 648
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 103/242 (42%), Gaps = 10/242 (4%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
I G+I + +R IQ +++ + E++ F+E+ +L + +++KF +
Sbjct: 166 IQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMY 225
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRD 522
GS Q E+ G V + +++ A + L Q++ L EL G+ + +
Sbjct: 226 GSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKS 285
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFR------GQVATLSTHPYGCRVIQRVLEHCSDEQ 576
+ + + K +E P EK+E I+ + Q + H +V + +
Sbjct: 286 AD-HRTLDKVLEVQP-EKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKL 343
Query: 577 QGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASN 636
+ + +++ I E+ LA G V H L G +R I+ + + +++ +Y+
Sbjct: 344 RSE-MIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHL 402
Query: 637 VV 638
V+
Sbjct: 403 VL 404
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 109/253 (43%), Gaps = 38/253 (15%)
Query: 428 CSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
C E++V + ++ K+ T F + VIQ + ++G+ +QRK+ E+L ++ L
Sbjct: 150 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVEL 209
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF 543
S Y +++K L Q ++++ GHV + +R + +++ +
Sbjct: 210 SKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYA----------Y 259
Query: 544 IISAFRGQVATLSTHPYGC----------RVIQRVLEHCSDEQQGQCIVDEILESAFALA 593
A Q L+ YG R + +VLE ++ + I+DE+ + +A
Sbjct: 260 NDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLE--VQPEKLELIMDEMKQILTPMA 317
Query: 594 QDQYGNYVTQHVLERGKSYE---------RTQILSKLAGKIVQMSQHKYASNVVEKCLEY 644
Q + V +H L + R++++ + +V ++ + V CL +
Sbjct: 318 QKE---AVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVAMHCLWH 374
Query: 645 GDTAERELLIEEI 657
G +R+++++ +
Sbjct: 375 GTPKDRKVIVKTM 387
>sp|Q8BKS9|K0020_MOUSE Pumilio domain-containing protein KIAA0020 OS=Mus musculus
GN=Kiaa0020 PE=2 SV=2
Length = 647
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 104/243 (42%), Gaps = 12/243 (4%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
I G+I + +R IQ +++ + E++ F+E+ +L + +++KF +
Sbjct: 165 IQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMY 224
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRD 522
GS Q E+ G V + +++ A + L Q++ L EL G+ + +
Sbjct: 225 GSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYK- 283
Query: 523 QNGNH-VIQKCIECVPAEKIEFIISAFR------GQVATLSTHPYGCRVIQRVLEHCSDE 575
+ +H + K +E PA K+E I+ + Q + H +V + +
Sbjct: 284 -SADHPTLDKVLELQPA-KLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPK 341
Query: 576 QQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYAS 635
+ + +++ I E+ LA G V H L G +R I+ + + +++ +Y+
Sbjct: 342 PRSE-LIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSH 400
Query: 636 NVV 638
V+
Sbjct: 401 LVL 403
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 110/247 (44%), Gaps = 26/247 (10%)
Query: 428 CSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
C E++V + ++ K+ T F + VIQ F ++G+ +QRK+ ++L G ++ L
Sbjct: 149 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVEL 208
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI-ECVPAEKIE 542
S Y +++K L Q ++++ GHV + +R + +++ + E+
Sbjct: 209 SKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRN 268
Query: 543 FIISAFRGQVATL---STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGN 599
+ G L + HP + +VLE + + I+DE+ + +AQ +
Sbjct: 269 MLTEELYGNTFQLYKSADHP----TLDKVLE--LQPAKLELIMDEMKQILTPMAQKE--- 319
Query: 600 YVTQHVLERGKSYE---------RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAER 650
V +H L + R++++ + +V ++ + V CL +G +R
Sbjct: 320 AVIKHSLVHKVFLDFFTYAPPKPRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDR 379
Query: 651 ELLIEEI 657
+++++ +
Sbjct: 380 KVIVKTM 386
>sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1
Length = 656
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 102/237 (43%), Gaps = 9/237 (3%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I + + SR +Q +++ S + + + + L T +G Y++ K +GS
Sbjct: 161 ISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRS 220
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH-QKSQLVLELDGHVMRCVRDQNGN 526
R+ + +L G + L G V++ + H Q+ Q++ E G R+ + +
Sbjct: 221 SRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKD 280
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQV-ATLSTHPYGCRVIQRVLEH---CSDEQQGQCIV 582
I+K E EK I G + A++ G +++ + ++E++ ++
Sbjct: 281 LTIEKVCES-SIEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMI 339
Query: 583 DEILESAFA-LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVV 638
E+L FA L G+ V ++ R + ER IL L ++ +++Y N+V
Sbjct: 340 -ELLHEQFAELVHTPEGSDVACTLVARANAKERKLILKALKNHAEKLIKNEYG-NIV 394
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/235 (18%), Positives = 101/235 (42%), Gaps = 14/235 (5%)
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
++Q ++ S D+R+++ + L G+ L+ YG ++ K L + ++ EL G
Sbjct: 173 IVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGS 232
Query: 516 VMRCVRDQNGNHVIQKCIECVPA-EKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSD 574
+ + +R + G +V++ E+ + +I F G + + I++V E S
Sbjct: 233 LRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCE--SS 290
Query: 575 EQQGQCIVDEILESAFALAQDQYGNYVTQHVLER-----GKSYERTQILSKLAGKIVQMS 629
++ I ++ + A + + H R E ++++ L + ++
Sbjct: 291 IEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQFAELV 350
Query: 630 QHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKIL 684
S+V + + ER+L+++ + +E+ ++K++Y N V IL
Sbjct: 351 HTPEGSDVACTLVARANAKERKLILKALKNHAEK------LIKNEYGNIVFITIL 399
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 378 TFEDSKK----HSFLEELKSSNAQK-----FELSDIAGRIVEFSVDQHGSRFIQQKLEHC 428
T+E SK+ H L ++ N K +++ ++ I + +R IQ L++
Sbjct: 133 TYEISKEANQIHEKLRCRRTENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKYA 192
Query: 429 SAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMY 488
S + + +++LP ++ + + +Q+ ++G+P + +L + L G ++ L+
Sbjct: 193 SPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGHSI 252
Query: 489 GCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
G ++ + +Q+ + E G + R +D N
Sbjct: 253 GSGLLDSMYQSATPNQRIYMRQEFYGDLYRKAKDSN 288
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 601 VTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILG 659
V Q +L+ R +I KL V+M Q KYA V++ L+YG A + L++ + G
Sbjct: 184 VIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYG 242
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 536 VPAEKIEFIISAF----RGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFA 591
+ AE+ + II+ R V L RV+Q ++ S +QQ + I E+ S
Sbjct: 146 IKAEERKTIIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGS-KQQRETICAELAGSYVD 204
Query: 592 LAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCL-EYGDTAER 650
L + YG Y+ + + G + IL ++ G +V+M +H+ A+ VVE E+ + ++
Sbjct: 205 LCKSPYGKYLAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQ 264
Query: 651 ELLIEEILG 659
LI E G
Sbjct: 265 RALICEFYG 273
>sp|Q6C9H2|NOP9_YARLI Nucleolar protein 9 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP9 PE=3 SV=1
Length = 724
Score = 40.8 bits (94), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 82/420 (19%), Positives = 166/420 (39%), Gaps = 91/420 (21%)
Query: 335 PSSPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKK---HSFLEEL 391
P+S G++S L + + RN I + R ++ F D+ + F + L
Sbjct: 237 PTSSEGNSSVL----RSKKSRTARRNIDIKDSEENDRAYQIPGAFHDALEAIVSGFSKRL 292
Query: 392 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEH---CSAEEKVSVFKEVLPHASKLM 448
K + A++ + ++ +V+ +D + Q+ L + E++ S + + H L+
Sbjct: 293 KPTAARELAIGQVSSPVVQLLIDSEATTSEQRPLLNTIFADTEDRDSSEEAFVEH---LL 349
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE--VIELHQKS 506
+D G++ +Q V+QKA E V L++
Sbjct: 350 SDAVGSHFLQN--------------------------------VLQKAPEAFVERLYR-- 375
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
L + V + VR VI+ C++ +P + II G++ L + V
Sbjct: 376 ---LYMSQRVQKLVRRDYAGFVIETCMQRLPEADVHHIIDTAMGEIPYLVENNNLTMVRI 432
Query: 567 RVLEHCSDEQQGQCIVDEILES-----------AFALAQDQYGNY--------------V 601
+ + + + + +L++ L D+ Y V
Sbjct: 433 LLTRAAAANYKATDVANAVLKTFDTDSTDPKLLQKVLQLDEKNPYKPHEASSPGLHRCLV 492
Query: 602 TQHVLERGKSYERTQILSKLAGKI--VQMSQHKYASNVVEKCLEYG-DTAERELLIEEIL 658
Q ++E T + +G + ++M++H+ S ++EKCL +T ER + +I
Sbjct: 493 LQQLVEASPEVLATAFVGLNSGDVDVIKMAKHQSYSRLLEKCLRPSINTIERRKFLNKIN 552
Query: 659 GQSEENDNLLVMMKDQYANYVVQKILE---KCNEKLRETLISRIRVHCDALKKYTYGKHI 715
GQ + + +D +A++V+ ++ K N RE + + + V + LK+ TYGK +
Sbjct: 553 GQCVD------LARDPFASHVMDRLWNFTYKMN-NFREKIANEL-VADEDLKENTYGKAV 604
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,187,620
Number of Sequences: 539616
Number of extensions: 12498555
Number of successful extensions: 35755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 34711
Number of HSP's gapped (non-prelim): 356
length of query: 727
length of database: 191,569,459
effective HSP length: 125
effective length of query: 602
effective length of database: 124,117,459
effective search space: 74718710318
effective search space used: 74718710318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)