Query 004857
Match_columns 727
No_of_seqs 296 out of 1658
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 2.2E-67 7.4E-72 570.4 25.5 342 383-725 3-345 (351)
2 3k49_A MRNA-binding protein PU 100.0 6.6E-66 2.3E-70 562.3 22.3 342 383-725 3-363 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 9E-63 3.1E-67 545.7 25.5 343 363-725 4-405 (412)
4 3v71_A PUF (pumilio/FBF) domai 100.0 1.2E-60 4.1E-65 524.1 23.6 324 398-721 10-380 (382)
5 3bwt_A Protein PUF4; pumilio, 100.0 1.9E-60 6.3E-65 511.4 18.2 320 397-720 4-332 (333)
6 3gvo_A Pumilio 2, pumilio homo 100.0 1.2E-44 4E-49 392.2 18.3 265 379-644 68-342 (351)
7 3bwt_A Protein PUF4; pumilio, 100.0 2.9E-41 1E-45 362.3 21.7 281 435-724 6-296 (333)
8 3k49_A MRNA-binding protein PU 100.0 2.2E-41 7.6E-46 368.9 15.8 301 416-723 3-324 (369)
9 3v71_A PUF (pumilio/FBF) domai 100.0 1E-37 3.5E-42 342.3 21.0 282 437-725 13-329 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 1.5E-36 5.3E-41 335.9 26.0 279 441-725 28-349 (412)
11 2of3_A ZYG-9; multifunctional 81.1 23 0.00078 36.6 14.1 158 521-701 97-263 (266)
12 3u0r_A Apoptosis inhibitor 5; 80.6 55 0.0019 36.7 17.6 105 609-721 146-267 (507)
13 3hjl_A Flagellar motor switch 79.9 66 0.0023 34.1 20.7 174 424-624 30-225 (329)
14 1wdy_A 2-5A-dependent ribonucl 72.4 28 0.00097 33.6 11.6 254 420-695 8-272 (285)
15 2ilr_A Protein FACE, fanconi a 57.0 97 0.0033 31.9 12.2 19 423-441 42-60 (264)
16 1x5b_A Signal transducing adap 52.6 1.1E+02 0.0038 28.9 11.2 73 636-726 74-147 (163)
17 4fhr_B Flagellar motor switch 52.3 1.2E+02 0.0041 30.1 11.8 119 452-573 43-170 (216)
18 2pnn_A Transient receptor pote 51.2 1E+02 0.0035 30.0 11.2 62 414-475 10-79 (273)
19 3tpo_A Importin subunit alpha- 50.6 2.8E+02 0.0096 30.3 19.3 28 427-454 149-177 (529)
20 3ldz_A STAM-1, signal transduc 47.4 1.3E+02 0.0045 27.5 10.5 42 685-726 95-136 (140)
21 3ul1_B Importin subunit alpha- 46.4 3.2E+02 0.011 29.7 16.6 26 427-452 130-156 (510)
22 1k1a_A B-cell lymphoma 3-encod 46.2 1.3E+02 0.0046 28.1 10.9 87 413-502 5-92 (241)
23 3u0r_A Apoptosis inhibitor 5; 45.5 1.3E+02 0.0046 33.6 11.7 158 408-570 89-267 (507)
24 2f8y_A Notch homolog 1, transl 43.7 1.9E+02 0.0066 26.7 11.5 124 414-546 22-146 (223)
25 3pkr_A FLIG, flagellar motor s 43.6 2.2E+02 0.0076 29.4 12.5 152 419-573 64-227 (279)
26 2yvy_A MGTE, Mg2+ transporter 42.2 49 0.0017 33.4 7.3 17 424-440 39-55 (278)
27 3b2a_A TON_1937, putative unch 37.9 2.7E+02 0.0091 28.6 11.6 35 600-634 55-89 (265)
28 2dzn_A Probable 26S proteasome 37.7 1.9E+02 0.0065 26.8 10.4 119 422-546 7-128 (228)
29 2etb_A Transient receptor pote 36.1 1.2E+02 0.0042 29.0 8.9 124 523-653 88-240 (256)
30 1xi4_A Clathrin heavy chain; a 35.6 3.1E+02 0.011 35.1 13.9 53 381-433 526-578 (1630)
31 3eu9_A Huntingtin-interacting 35.3 2.1E+02 0.0073 26.4 10.3 123 415-546 7-130 (240)
32 2etb_A Transient receptor pote 35.2 2.1E+02 0.0072 27.3 10.5 194 421-618 6-241 (256)
33 3hra_A Ankyrin repeat family p 34.9 2.4E+02 0.0083 25.5 10.5 118 449-573 35-152 (201)
34 3jxi_A Vanilloid receptor-rela 34.5 2.5E+02 0.0086 26.7 10.9 189 419-611 7-238 (260)
35 3hjl_A Flagellar motor switch 33.4 4.5E+02 0.015 27.7 19.9 34 674-707 197-230 (329)
36 1b3u_A Protein (protein phosph 31.9 5E+02 0.017 27.7 20.9 291 417-727 107-454 (588)
37 2rfa_A Transient receptor pote 31.8 3.2E+02 0.011 25.4 11.2 54 449-502 33-88 (232)
38 3g2s_A C-terminal fragment of 31.2 2.3E+02 0.0077 26.4 9.4 75 636-726 70-145 (149)
39 1k1a_A B-cell lymphoma 3-encod 30.2 1.6E+02 0.0056 27.5 8.6 188 448-648 4-197 (241)
40 3rru_A TOM1L1 protein; structu 30.1 1.2E+02 0.0043 28.3 7.4 78 634-726 74-152 (152)
41 3utm_A Tankyrase-1; tankyrase, 29.5 4.1E+02 0.014 26.0 13.1 123 415-546 22-145 (351)
42 3d9h_A CDNA FLJ77766, highly s 28.4 2.9E+02 0.01 27.1 10.5 83 413-501 55-137 (285)
43 3pkr_A FLIG, flagellar motor s 27.0 2.2E+02 0.0074 29.5 9.1 51 536-587 115-168 (279)
44 1elk_A Target of MYB1; superhe 26.2 3.9E+02 0.013 24.8 10.1 78 634-726 74-152 (157)
45 4ap2_B Cullin-3, CUL-3; ubiqui 25.3 6.5E+02 0.022 26.9 15.2 34 390-423 43-76 (410)
46 2zy9_A Mg2+ transporter MGTE; 24.7 1.1E+02 0.0039 33.6 7.0 42 423-476 58-99 (473)
47 3eu9_A Huntingtin-interacting 24.7 3.3E+02 0.011 25.0 9.6 222 449-697 5-231 (240)
48 2pnn_A Transient receptor pote 23.7 1.9E+02 0.0064 28.0 7.8 194 449-653 9-252 (273)
49 2xai_A ASB-9, ankyrin repeat a 23.4 4.3E+02 0.015 25.3 10.4 50 448-500 31-80 (261)
50 3zyq_A Hepatocyte growth facto 23.3 2.6E+02 0.0089 27.6 8.7 40 687-726 101-140 (226)
51 3jxi_A Vanilloid receptor-rela 23.2 1.8E+02 0.0063 27.7 7.6 198 450-655 2-246 (260)
52 1juq_A ADP-ribosylation factor 22.7 3.4E+02 0.011 25.7 9.0 74 636-726 72-147 (171)
53 2f8y_A Notch homolog 1, transl 21.8 2.3E+02 0.0078 26.2 7.7 115 448-572 20-136 (223)
54 2dzn_A Probable 26S proteasome 21.6 1.5E+02 0.0052 27.5 6.4 47 453-501 2-48 (228)
55 1oy3_D Transcription factor in 20.3 3.6E+02 0.012 25.6 9.0 26 449-474 41-66 (282)
56 3b7b_A Euchromatic histone-lys 20.2 1.2E+02 0.0042 28.4 5.5 229 448-701 6-235 (237)
57 3aji_A 26S proteasome non-ATPa 20.0 5.1E+02 0.018 23.8 10.7 78 419-501 8-85 (231)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.2e-67 Score=570.40 Aligned_cols=342 Identities=56% Similarity=0.949 Sum_probs=329.5
Q ss_pred hhhHHHHHhhccccccchHHhHHHHHHHHhcCCCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhc
Q 004857 383 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462 (727)
Q Consensus 383 ~r~~LLeeL~~~~~~~~~L~~I~GkIveLa~dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe 462 (727)
-|+.|||+|+.++.+.++|+++.|+|+++|+||+|||+||++|+.+++++++.||+|+.+++.+||+|+||||||||||+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCchhhhHhhhcCChhHHH
Q 004857 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 542 (727)
Q Consensus 463 ~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNhVIQklLe~~~~e~~~ 542 (727)
+++++++..|++.+.|++.+|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||+|+||++++++.+.
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred hCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHHcCCchhHHHHHHHHH
Q 004857 543 FIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLA 622 (727)
Q Consensus 543 ~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~~La~Dq~GNyVVQ~lLe~~~~k~r~~II~~L~ 622 (727)
+|++.+.+++.+|++|+|||+|||++|+++.. +++..|++++.+++..|++|+|||||||++|+++.++.++.|++.|+
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~-~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA-EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCH-HHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 99999999999999999999999999999875 47788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchHHHHHHHHHHhCCHHHHHHHHHHHhcCCCC-hhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004857 623 GKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEE-NDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV 701 (727)
Q Consensus 623 g~lveLs~~K~GS~VVEk~L~~as~k~Rk~IIkeLl~~~~~-~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~ 701 (727)
+++.+|++|||||+|||+||+++++++|+.|+++++...++ .+.+..|+.|+|||||||++|+.+++++|+.|++.|++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~ 321 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 321 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999974322 24799999999999999999999999999999999999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhc
Q 004857 702 HCDALKKYTYGKHIVARFEQLYGE 725 (727)
Q Consensus 702 ~l~~L~~~~yGk~Vv~~Lekli~~ 725 (727)
++..|++++||++|+++||+++..
T Consensus 322 ~~~~L~~~~~g~~i~~kl~~~~~~ 345 (351)
T 3gvo_A 322 HITTLRKYTYGKHILAKLEKYYLK 345 (351)
T ss_dssp GHHHHTTSTTTHHHHHHHHHHTC-
T ss_pred HHHHHhcCCchHHHHHHHHHHHhh
Confidence 999999999999999999999864
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=6.6e-66 Score=562.32 Aligned_cols=342 Identities=46% Similarity=0.745 Sum_probs=322.3
Q ss_pred hhhHHHHHhhcccc-----ccchHHhHHHHHHHHhcCCCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchh
Q 004857 383 KKHSFLEELKSSNA-----QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457 (727)
Q Consensus 383 ~r~~LLeeL~~~~~-----~~~~L~~I~GkIveLa~dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VV 457 (727)
.|+.|||+|+.+.. +++.|+++.|+++++|+||+|||+||++|+++++++++.||+||.+++.+||+|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 58899999998764 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCchhhhHhhhcCC
Q 004857 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVP 537 (727)
Q Consensus 458 QKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNhVIQklLe~~~ 537 (727)
||||++++++++..|++.+.|++..|++|+|||||||+++++++.+++..|++||.+++..|++|++||||||+||++++
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHHcCCchh----
Q 004857 538 AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE---- 613 (727)
Q Consensus 538 ~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~~La~Dq~GNyVVQ~lLe~~~~k~---- 613 (727)
++.+++|++.+.+++.+|+.|+|||+|+|+||+++..+ ++..+++++.+++..|++|+|||||||++|++++++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~-~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSE-DQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHH-HHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHH-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 99999999999999999999999999999999998754 6788999999999999999999999999999998765
Q ss_pred --HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCHHHHHHHHHHHhcCC-------CChhHHHhhhcCCChHHHHHHHH
Q 004857 614 --RTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQS-------EENDNLLVMMKDQYANYVVQKIL 684 (727)
Q Consensus 614 --r~~II~~L~g~lveLs~~K~GS~VVEk~L~~as~k~Rk~IIkeLl~~~-------~~~e~L~~La~DqyGnyVVQklL 684 (727)
+..|++.|.+++.+|+++||||+|||+||+++++++|+.|+++++... ++++.|..|++|+|||||||++|
T Consensus 242 ~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l 321 (369)
T 3k49_A 242 DIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 321 (369)
T ss_dssp HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHH
Confidence 578999999999999999999999999999999999999999998753 23467999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhHHHHhc-CCChHHHHHHHHHHHhc
Q 004857 685 EKCNEKLRETLISRIRVHCDALKK-YTYGKHIVARFEQLYGE 725 (727)
Q Consensus 685 ~~~d~~~Rk~Ll~~Lk~~l~~L~~-~~yGk~Vv~~Lekli~~ 725 (727)
+.+++++|+.|+++|++++.+|++ ++||++|++++||++..
T Consensus 322 ~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~~ 363 (369)
T 3k49_A 322 NVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAAL 363 (369)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHH
Confidence 999999999999999999999987 59999999999999863
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=9e-63 Score=545.67 Aligned_cols=343 Identities=28% Similarity=0.521 Sum_probs=312.0
Q ss_pred CCCCCccccccCCCcccCChhhhHHHHHhhccccccchHHhH--HHHHHHHhcCCCccHHHHHhhhcC-CHHHHHHHHHH
Q 004857 363 IYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKE 439 (727)
Q Consensus 363 ~~~~W~~~r~~~~~~~~~d~~r~~LLeeL~~~~~~~~~L~~I--~GkIveLa~dq~gSRvLQ~lLk~~-t~Eqr~~If~E 439 (727)
++|.|...+.++ +.+. +.|.++ +|+|+++|+||+|||+||++|+.+ ++++++.||+|
T Consensus 4 ~~~~w~~~~~~~----~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~e 63 (412)
T 3k62_A 4 VLPTWSLDSNGE----MRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQ 63 (412)
T ss_dssp -CCGGGBCTTSS----BCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred cCccchhcccCC----CCCC----------------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHH
Confidence 568899999887 4332 456676 699999999999999999999997 89999999999
Q ss_pred Hhhc---hhhhccCccccchhhhhhccCCH-------HHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHH
Q 004857 440 VLPH---ASKLMTDVFGNYVIQKFFEHGSP-------DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509 (727)
Q Consensus 440 I~~~---~~eL~tD~fGn~VVQKLLe~gs~-------eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv 509 (727)
|.++ +.+||+|+||||||||||++|++ +++..|++.+.|++.+|+.|++||||||++|++++.+++..|+
T Consensus 64 l~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv 143 (412)
T 3k62_A 64 VIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV 143 (412)
T ss_dssp HSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHH
Confidence 9986 89999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHH--HHHHHHHhhcccCchhhhHhhhcCChhHHHHHHHHhh--hhHhhhccCCCCchHHHHHHhhCCcH----------
Q 004857 510 LEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQRVLEHCSDE---------- 575 (727)
Q Consensus 510 ~EL--~g~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~--~~l~~Ls~hk~GS~VLQk~Le~~~~~---------- 575 (727)
+|| .+++..|++|++||||||+||+.++++.+++|++.+. +++.+|++|+|||+|||+||+++.++
T Consensus 144 ~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~ 223 (412)
T 3k62_A 144 QALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAA 223 (412)
T ss_dssp HTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHH
T ss_pred HHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhh
Confidence 999 6899999999999999999999999999999999998 59999999999999999999999853
Q ss_pred -HHHH----HHHHHHHHHHHHHhhCcCccHHHHHHHHcCCch-hHHHHHH-HHHHHHHHHhcCchHHHHHHHHHHhCCHH
Q 004857 576 -QQGQ----CIVDEILESAFALAQDQYGNYVTQHVLERGKSY-ERTQILS-KLAGKIVQMSQHKYASNVVEKCLEYGDTA 648 (727)
Q Consensus 576 -~~r~----~Ll~eI~~~l~~La~Dq~GNyVVQ~lLe~~~~k-~r~~II~-~L~g~lveLs~~K~GS~VVEk~L~~as~k 648 (727)
+++. .++++|..++..|++|+|||||||++|+++.++ .|..|++ .|.+++++||+|||||+|||+||++++++
T Consensus 224 ~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~ 303 (412)
T 3k62_A 224 QNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLE 303 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHH
Confidence 2343 467788888999999999999999999998876 4788887 59999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-----CCChhHHHhhhcCCChHHHHHHHHhcCCHH--------------------HHHHHHHHHHHhH
Q 004857 649 ERELLIEEILGQ-----SEENDNLLVMMKDQYANYVVQKILEKCNEK--------------------LRETLISRIRVHC 703 (727)
Q Consensus 649 ~Rk~IIkeLl~~-----~~~~e~L~~La~DqyGnyVVQklL~~~d~~--------------------~Rk~Ll~~Lk~~l 703 (727)
.|+.|+++|+.. ..+.+.|..|++|+|||||||++|+++++. .++.|+.+|++|.
T Consensus 304 ~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 383 (412)
T 3k62_A 304 LLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKER 383 (412)
T ss_dssp HHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999963 123467999999999999999999998764 3678999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhc
Q 004857 704 DALKKYTYGKHIVARFEQLYGE 725 (727)
Q Consensus 704 ~~L~~~~yGk~Vv~~Lekli~~ 725 (727)
..|++++|||+|+++|+++..+
T Consensus 384 ~~L~~~~~Gk~i~~~l~~~~~~ 405 (412)
T 3k62_A 384 HRLSRFSSGKKMIETLANLRST 405 (412)
T ss_dssp HHHTTSHHHHHHHHHHHHHHC-
T ss_pred HHhccCCCccHHHHHHHHhhcc
Confidence 9999999999999999998764
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-60 Score=524.09 Aligned_cols=324 Identities=27% Similarity=0.518 Sum_probs=295.2
Q ss_pred cchHHhH--HHHHHHHhcCCCccHHHHHhhhcCCHHH-HHHHHHHHh---hchhhhccCccccchhhhhhccCCHHHHHH
Q 004857 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVL---PHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471 (727)
Q Consensus 398 ~~~L~~I--~GkIveLa~dq~gSRvLQ~lLk~~t~Eq-r~~If~EI~---~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~ 471 (727)
.+.|.++ +|+++++|.||+||||||++|+.+++++ ++.||+||. +++.+||+|+||||||||||++|+++++..
T Consensus 10 ~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 10 FISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp -CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred cCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHH
Confidence 4567888 7999999999999999999999998665 789999985 689999999999999999999999999999
Q ss_pred HHHH-HhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHH-HHHHHhhcccCchhhhHhhhcCChhHHHHHHHHhh
Q 004857 472 LAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR 549 (727)
Q Consensus 472 Ii~~-L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g-~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~ 549 (727)
|+.. +++++..|+.|+|||||||+++++++.+++..|+.||.+ ++..|++|++||||||+||++.+++.+++|++.+.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 9887 689999999999999999999999999999999999998 89999999999999999999999999999999997
Q ss_pred --hhHhhhccCCCCchHHHHHHhhCCcHHH----------HHHHHHHHHHHHHHHhhCcCccHHHHHHHHcCCc--hhHH
Q 004857 550 --GQVATLSTHPYGCRVIQRVLEHCSDEQQ----------GQCIVDEILESAFALAQDQYGNYVTQHVLERGKS--YERT 615 (727)
Q Consensus 550 --~~l~~Ls~hk~GS~VLQk~Le~~~~~~~----------r~~Ll~eI~~~l~~La~Dq~GNyVVQ~lLe~~~~--k~r~ 615 (727)
+++.++++|+|||+|||+||+++.++.+ ...|+++|..++..|++|+|||||||++|+++.+ +.|.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHH
Confidence 6999999999999999999999876421 2346777888889999999999999999999874 4688
Q ss_pred HHHHH-HHHHHHHHhcCchHHHHHHHHHHhCCHHHHHHHHHHHhcC-----CCChhHHHhhhcCCChHHHHHHHHhcCCH
Q 004857 616 QILSK-LAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQ-----SEENDNLLVMMKDQYANYVVQKILEKCNE 689 (727)
Q Consensus 616 ~II~~-L~g~lveLs~~K~GS~VVEk~L~~as~k~Rk~IIkeLl~~-----~~~~e~L~~La~DqyGnyVVQklL~~~d~ 689 (727)
.|++. |.+++.+|++|||||+|||+||++++++.|+.|+++|+.. ..+.+.|..|++|+|||||||++|+.+++
T Consensus 250 ~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~ 329 (382)
T 3v71_A 250 TIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTA 329 (382)
T ss_dssp HHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHccc
Confidence 99974 9999999999999999999999999999999999999962 22346899999999999999999999876
Q ss_pred H-------------------HHHHHHHHHHHhHHHHhcCCChHHHHHHHHH
Q 004857 690 K-------------------LRETLISRIRVHCDALKKYTYGKHIVARFEQ 721 (727)
Q Consensus 690 ~-------------------~Rk~Ll~~Lk~~l~~L~~~~yGk~Vv~~Lek 721 (727)
. .+++|+++|++|+..|+.++|||||+++|+|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 330 ALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred ccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHh
Confidence 2 3579999999999999999999999999998
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.9e-60 Score=511.40 Aligned_cols=320 Identities=31% Similarity=0.497 Sum_probs=297.4
Q ss_pred ccchHHhHHHHHHHHhcCCCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHH
Q 004857 397 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKL 476 (727)
Q Consensus 397 ~~~~L~~I~GkIveLa~dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L 476 (727)
+...+++++|+++++|+||+|||+||++|+++++++++.||+|+.+++.+||+|+||||||||+|++++++++..|++.+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhhccCcchhHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHhhcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhh
Q 004857 477 VGQVLPLSLQMYGCRVIQKALEVIE-LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555 (727)
Q Consensus 477 ~G~v~~La~h~yGSrVIQklIe~as-~eqr~~Lv~EL~g~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~L 555 (727)
.|++.+|++|+|||||||+++++++ ++++..+++||.+++..|++|++||||||+||+.++++.+++|++.+.+++.+|
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 556777899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHHcCCchh----HHHHHHHHHHHHHHHhcC
Q 004857 556 STHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYE----RTQILSKLAGKIVQMSQH 631 (727)
Q Consensus 556 s~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~~La~Dq~GNyVVQ~lLe~~~~k~----r~~II~~L~g~lveLs~~ 631 (727)
+.|++||+|+|+||+++.. ++++.|++++.+++..|++|+|||||||++|++++++. ++.|++.|++++.+|+++
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~~-~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~ 242 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGTT-EQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 242 (333)
T ss_dssp HTSTTHHHHHHHHHHHCCH-HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTS
T ss_pred hcCchhHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999874 57889999999999999999999999999999876543 689999999999999999
Q ss_pred chHHHHHHHHHHhCCHHHHHHHHHHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHH---HHHHHHHHHHHhH-HHHh
Q 004857 632 KYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEK---LRETLISRIRVHC-DALK 707 (727)
Q Consensus 632 K~GS~VVEk~L~~as~k~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~---~Rk~Ll~~Lk~~l-~~L~ 707 (727)
||||+||++||+.++ .++.++++++... +.+.+..|+.|+|||||||++|+.++++ .++.|+++|++++ .+|+
T Consensus 243 k~gs~Vvek~l~~~~--~~~~ii~ell~~~-~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr 319 (333)
T 3bwt_A 243 KFGSNVIEKILKTAI--VSEPMILEILNNG-GETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIR 319 (333)
T ss_dssp TTHHHHHHHHHTSHH--HHHHHHHHHHHTT-HHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGG
T ss_pred cHHHHHHHHHHcccc--hhHHHHHHHHhcc-CchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhc
Confidence 999999999999653 5678899988632 2367999999999999999999998765 7899999999998 9999
Q ss_pred cCCChHHHHHHHH
Q 004857 708 KYTYGKHIVARFE 720 (727)
Q Consensus 708 ~~~yGk~Vv~~Le 720 (727)
.++|||+|+++|+
T Consensus 320 ~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 320 NTPHGKRIIGMLH 332 (333)
T ss_dssp GSHHHHHHHTTSC
T ss_pred CCCCHHHHHHHhc
Confidence 9999999998764
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.2e-44 Score=392.25 Aligned_cols=265 Identities=29% Similarity=0.464 Sum_probs=246.3
Q ss_pred cCChhhhHHHHHhh---ccccccchHHhHHHHHHHHhcCCCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccc
Q 004857 379 FEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455 (727)
Q Consensus 379 ~~d~~r~~LLeeL~---~~~~~~~~L~~I~GkIveLa~dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~ 455 (727)
|.|.+.+.+++.|- +.+.+...++.+.|++++++.|++||||||++|+.++.+++..|++|+.+++.+|++|+||||
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ 147 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 147 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhH
Confidence 34555555555443 234456678889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCchhhhHhhhc
Q 004857 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 535 (727)
Q Consensus 456 VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNhVIQklLe~ 535 (727)
||||+|++++++++..|++.+.+++..|++|+|||+|||+++++++.+++..|++||.+++..|++|+|||||||++|++
T Consensus 148 ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~ 227 (351)
T 3gvo_A 148 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 227 (351)
T ss_dssp HHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHH-------HHHHHhhCcCccHHHHHHHHc
Q 004857 536 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILE-------SAFALAQDQYGNYVTQHVLER 608 (727)
Q Consensus 536 ~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~-------~l~~La~Dq~GNyVVQ~lLe~ 608 (727)
++++.++.|++.+++++..|++|+|||+|||+||+++.. +++..|++++.. .+..|++|+|||||||++|+.
T Consensus 228 ~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~-~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~ 306 (351)
T 3gvo_A 228 GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASR-AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 306 (351)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCH-HHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHh
Confidence 999999999999999999999999999999999999875 478889999986 799999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Q 004857 609 GKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEY 644 (727)
Q Consensus 609 ~~~k~r~~II~~L~g~lveLs~~K~GS~VVEk~L~~ 644 (727)
+++++|+.|++.|++++..|+.++||++|++++.+.
T Consensus 307 ~~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~ 342 (351)
T 3gvo_A 307 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKY 342 (351)
T ss_dssp CCHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 999999999999999999999999999999998765
No 7
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.9e-41 Score=362.29 Aligned_cols=281 Identities=20% Similarity=0.301 Sum_probs=257.5
Q ss_pred HHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHH
Q 004857 435 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG 514 (727)
Q Consensus 435 ~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g 514 (727)
.+++++.+++.+|++|++|+++||++|++++++++..|++++.+++.+|++|+||++|||+++++++.+++..|++++.+
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~ 85 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSP 85 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCchhhhHhhhcCC-hhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHHHHHHh
Q 004857 515 HVMRCVRDQNGNHVIQKCIECVP-AEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFALA 593 (727)
Q Consensus 515 ~i~~L~~D~~GNhVIQklLe~~~-~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~~La 593 (727)
++..++.|++|++|+|+++++.+ ++.+..|++.+.+++..|+.|+||++|||++|+.... +.++.|++.+.+++..|+
T Consensus 86 ~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~-~~~~~i~~~l~~~~~~l~ 164 (333)
T 3bwt_A 86 HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKP-ENFQFIFDAISDSCIDIA 164 (333)
T ss_dssp GHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCH-HHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875 5567888999999999999999999999999998764 467889999999999999
Q ss_pred hCcCccHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCHHH----HHHHHHHHhcCCCChhHHHh
Q 004857 594 QDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE----RELLIEEILGQSEENDNLLV 669 (727)
Q Consensus 594 ~Dq~GNyVVQ~lLe~~~~k~r~~II~~L~g~lveLs~~K~GS~VVEk~L~~as~k~----Rk~IIkeLl~~~~~~e~L~~ 669 (727)
++++|+.|||++|+++.+++++.|++.|.+++..|++++||++||+++|+.++++. ++.|++.+. +++.+
T Consensus 165 ~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~------~~~~~ 238 (333)
T 3bwt_A 165 THRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK------PRAIE 238 (333)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHG------GGHHH
T ss_pred cCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHH------HHHHH
Confidence 99999999999999999999999999999999999999999999999999877654 688888875 89999
Q ss_pred hhcCCChHHHHHHHHhcCCHHHHHHHHHHHH-----HhHHHHhcCCChHHHHHHHHHHHh
Q 004857 670 MMKDQYANYVVQKILEKCNEKLRETLISRIR-----VHCDALKKYTYGKHIVARFEQLYG 724 (727)
Q Consensus 670 La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk-----~~l~~L~~~~yGk~Vv~~Lekli~ 724 (727)
|++++||++||+++|+..+ .++.++.++. +++..|..++||++|+.++....+
T Consensus 239 Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~ 296 (333)
T 3bwt_A 239 LSIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISH 296 (333)
T ss_dssp HHTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhcc
Confidence 9999999999999999754 5677877765 579999999999999999887765
No 8
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=2.2e-41 Score=368.94 Aligned_cols=301 Identities=22% Similarity=0.318 Sum_probs=278.1
Q ss_pred CccHHHHHhhhcCC--HHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHH
Q 004857 416 HGSRFIQQKLEHCS--AEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493 (727)
Q Consensus 416 ~gSRvLQ~lLk~~t--~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVI 493 (727)
+.|++|+.+....+ ..++...++++.+++++|++|++|+++||++|++++++++..|++++.+++.+|+.|+||++||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 35788888887763 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCC
Q 004857 494 QKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573 (727)
Q Consensus 494 QklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~ 573 (727)
|+++++++.+++..|++++.+++..|+.|++|++|+|++++...++.+..|++.+.+++..|++|++|++|||++|+.+.
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCHHH----
Q 004857 574 DEQQGQCIVDEILESAFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAE---- 649 (727)
Q Consensus 574 ~~~~r~~Ll~eI~~~l~~La~Dq~GNyVVQ~lLe~~~~k~r~~II~~L~g~lveLs~~K~GS~VVEk~L~~as~k~---- 649 (727)
.+ .+..|++.+.+++..|++++||+.|+|++|+++.++++..|++.|.+++..|+++.||.+||+++|+.++++.
T Consensus 163 ~~-~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IE-KLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GG-GCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 44 6788999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred --HHHHHHHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHH-------------hHHHHhcCCChHH
Q 004857 650 --RELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV-------------HCDALKKYTYGKH 714 (727)
Q Consensus 650 --Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~-------------~l~~L~~~~yGk~ 714 (727)
++.|++.+.+ ++.+|++|+||+.||+++|+.+++++|+.|+++|.. .+..|..++||.+
T Consensus 242 ~~~~~i~~~l~~------~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNy 315 (369)
T 3k49_A 242 DIKQEIIETVAN------NVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANY 315 (369)
T ss_dssp HHHHHHHHHHHT------THHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHH
T ss_pred hHHHHHHHHHHH------HHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHH
Confidence 6788888884 599999999999999999999999999999999853 4788999999999
Q ss_pred HHHHHHHHH
Q 004857 715 IVARFEQLY 723 (727)
Q Consensus 715 Vv~~Lekli 723 (727)
|++++-..+
T Consensus 316 Viq~~l~~~ 324 (369)
T 3k49_A 316 VIQKLVNVS 324 (369)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999887654
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-37 Score=342.30 Aligned_cols=282 Identities=21% Similarity=0.320 Sum_probs=253.1
Q ss_pred HHHH--hhchhhhccCccccchhhhhhccCCHH-HHHHHHHHHh---cChhhhccCcchhHHHHHHHHhhCHHHHHHHHH
Q 004857 437 FKEV--LPHASKLMTDVFGNYVIQKFFEHGSPD-QRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510 (727)
Q Consensus 437 f~EI--~~~~~eL~tD~fGn~VVQKLLe~gs~e-qr~~Ii~~L~---G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~ 510 (727)
++++ .+++.++++|++|+++||++|+.++++ .+..|++++. .++.+|+.++||++|||+++++++.+++..|+.
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~ 92 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLR 92 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5666 699999999999999999999999765 5788999886 578999999999999999999999999999998
Q ss_pred H-HHHHHHHHhhcccCchhhhHhhhcCChhHHHHHHHHhhh-hHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHH--
Q 004857 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG-QVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL-- 586 (727)
Q Consensus 511 E-L~g~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~-~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~-- 586 (727)
+ +.+++..|+.|.+|++|+|++|++.+.+.+..|++++.+ ++..|+.|++|++|||+||+.+..+ .++.|++++.
T Consensus 93 ~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~-~~~~Ii~~~~~~ 171 (382)
T 3v71_A 93 QMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVD-MWTFFVHFLSSG 171 (382)
T ss_dssp HHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTT-TSHHHHHHHHST
T ss_pred HHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHH-HHHHHHHHHhcc
Confidence 7 579999999999999999999999999999999999998 8999999999999999999998654 6678999997
Q ss_pred HHHHHHhhCcCccHHHHHHHHcCCchh-------H----HHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCH--HHHHHH
Q 004857 587 ESAFALAQDQYGNYVTQHVLERGKSYE-------R----TQILSKLAGKIVQMSQHKYASNVVEKCLEYGDT--AERELL 653 (727)
Q Consensus 587 ~~l~~La~Dq~GNyVVQ~lLe~~~~k~-------r----~~II~~L~g~lveLs~~K~GS~VVEk~L~~as~--k~Rk~I 653 (727)
+++..|++|+||++|||++|+++.+++ | ..|++.+.+++..|++++||++||++||+.+++ +.|..|
T Consensus 172 ~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~i 251 (382)
T 3v71_A 172 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 251 (382)
T ss_dssp THHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHH
T ss_pred cchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHH
Confidence 689999999999999999999987643 2 246677778889999999999999999999764 468889
Q ss_pred HHH-HhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHH-----------hHHHHhcCCChHHHHHHHHH
Q 004857 654 IEE-ILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV-----------HCDALKKYTYGKHIVARFEQ 721 (727)
Q Consensus 654 Ike-Ll~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~-----------~l~~L~~~~yGk~Vv~~Lek 721 (727)
+.+ |. +++..|++|+||++||+++|+.+++++|+.|+++|.. ++..|..++||.+|+.++-.
T Consensus 252 i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~ 325 (382)
T 3v71_A 252 IDKCLL------RNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMIS 325 (382)
T ss_dssp HHHTTT------TCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHH
Confidence 886 55 4699999999999999999999999999999999974 78999999999999999988
Q ss_pred HHhc
Q 004857 722 LYGE 725 (727)
Q Consensus 722 li~~ 725 (727)
.+.+
T Consensus 326 ~~~~ 329 (382)
T 3v71_A 326 ICTA 329 (382)
T ss_dssp HHHH
T ss_pred Hccc
Confidence 7763
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.5e-36 Score=335.91 Aligned_cols=279 Identities=20% Similarity=0.298 Sum_probs=254.4
Q ss_pred hhchhhhccCccccchhhhhhccC-CHHHHHHHHHHHhcC---hhhhccCcchhHHHHHHHHhhCH-------HHHHHHH
Q 004857 441 LPHASKLMTDVFGNYVIQKFFEHG-SPDQRKELAEKLVGQ---VLPLSLQMYGCRVIQKALEVIEL-------HQKSQLV 509 (727)
Q Consensus 441 ~~~~~eL~tD~fGn~VVQKLLe~g-s~eqr~~Ii~~L~G~---v~~La~h~yGSrVIQklIe~as~-------eqr~~Lv 509 (727)
.+++.++++|++|+.+||++|+++ +++++..|++++.++ +.+|+.|+||++|||+++++++. +++..|+
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~ 107 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLK 107 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHH
Confidence 689999999999999999999997 899999999999886 89999999999999999999999 8999999
Q ss_pred HHHHHHHHHHhhcccCchhhhHhhhcCChhHHHHHHHHh--hhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHH-
Q 004857 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEIL- 586 (727)
Q Consensus 510 ~EL~g~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L--~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~- 586 (727)
+.+.+++..|+.|++|++|+|++|+.++.+.+..|++++ .+++..|+.|++|++|||+||+.+. ++.++.|++++.
T Consensus 108 ~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~-~~~~~~I~~~~~~ 186 (412)
T 3k62_A 108 NFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIP-LKNWEFIVDFVAT 186 (412)
T ss_dssp HHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSC-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCC-HHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 7899999999999999999999986 447788999998
Q ss_pred -HHHHHHhhCcCccHHHHHHHHcCCc------------hhHH----HHHHHHHHHHHHHhcCchHHHHHHHHHHhCCHH-
Q 004857 587 -ESAFALAQDQYGNYVTQHVLERGKS------------YERT----QILSKLAGKIVQMSQHKYASNVVEKCLEYGDTA- 648 (727)
Q Consensus 587 -~~l~~La~Dq~GNyVVQ~lLe~~~~------------k~r~----~II~~L~g~lveLs~~K~GS~VVEk~L~~as~k- 648 (727)
+++..|++|+||+.|||++|+++.+ ++|. .|++.+..+...|++++||.+||++||+.+.++
T Consensus 187 ~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~ 266 (412)
T 3k62_A 187 PEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAV 266 (412)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHH
T ss_pred chhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchh
Confidence 5899999999999999999999874 2444 456677788899999999999999999998876
Q ss_pred HHHHHHHHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHH-----------hHHHHhcCCChHHHHH
Q 004857 649 ERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRV-----------HCDALKKYTYGKHIVA 717 (727)
Q Consensus 649 ~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~-----------~l~~L~~~~yGk~Vv~ 717 (727)
.|..|+...+. +++..|++|+||+.||+++|+.+++++|+.|+++|.. .+..|..++||..|++
T Consensus 267 ~r~~ii~~~l~-----~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ 341 (412)
T 3k62_A 267 YRECIIEKCLM-----RNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQ 341 (412)
T ss_dssp HHHHHHHHHTT-----TCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHH
Confidence 47888875333 4699999999999999999999999999999999985 4889999999999999
Q ss_pred HHHHHHhc
Q 004857 718 RFEQLYGE 725 (727)
Q Consensus 718 ~Lekli~~ 725 (727)
++-..+.+
T Consensus 342 ~~L~~~~~ 349 (412)
T 3k62_A 342 CMLTICCD 349 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHccc
Confidence 99888753
No 11
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=81.13 E-value=23 Score=36.58 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=78.3
Q ss_pred hcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCC-CchHHHHHHhhCCcHH-HHHHHHHHHHHHHHHHhhCcCc
Q 004857 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY-GCRVIQRVLEHCSDEQ-QGQCIVDEILESAFALAQDQYG 598 (727)
Q Consensus 521 ~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~-GS~VLQk~Le~~~~~~-~r~~Ll~eI~~~l~~La~Dq~G 598 (727)
.|.|.+ |++++|+.. ..+++.+.+.-..+ ..| ++.++=.+++.+++.. ..+.-+.+++..+..+. --
T Consensus 97 ~d~N~~-v~~~~L~~L-----~~l~~~l~~~~y~~--~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~ 165 (266)
T 2of3_A 97 FETNPA-ALIKVLELC-----KVIVELIRDTETPM--SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GP 165 (266)
T ss_dssp TSCCHH-HHHHHHHHH-----HHHHHHHHHTTCCC--CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CH
T ss_pred hCCCHH-HHHHHHHHH-----HHHHHHHHhccccc--hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CH
Confidence 355444 666777642 33334333221111 111 3445555566554432 22223334444443332 23
Q ss_pred cHHHHHHHH---cCCchhHHHHHHHHHHHHHHHhcCc-hHH---HHHHHHHHhCCHHHHHHHHHHHhcCCCChhHHHhhh
Q 004857 599 NYVTQHVLE---RGKSYERTQILSKLAGKIVQMSQHK-YAS---NVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMM 671 (727)
Q Consensus 599 NyVVQ~lLe---~~~~k~r~~II~~L~g~lveLs~~K-~GS---~VVEk~L~~as~k~Rk~IIkeLl~~~~~~e~L~~La 671 (727)
++|+..+++ +.+...|.+.++.+..-+..--... -+- ..|.+++.-.+...|+.-++.+.. +...+
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve-------~y~~~ 238 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA-------CFKFE 238 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHH-------HHHHh
Confidence 445555554 4456677777766654443322221 122 335556666677778877777663 34444
Q ss_pred cCCChHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004857 672 KDQYANYVVQKILEKCNEKLRETLISRIRV 701 (727)
Q Consensus 672 ~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~ 701 (727)
.|. |-+.+....++++..|-++++.
T Consensus 239 Gd~-----v~k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 239 GDQ-----MWKAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp TTH-----HHHHHCCCCHHHHHHHHHHHHH
T ss_pred hHH-----HHHHHhcCCHHHHHHHHHHHhh
Confidence 443 2334445677788888777764
No 12
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.61 E-value=55 Score=36.71 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCchH-------HHHHHHHHHhCCHHHHHHHHHHHhcCCCChhHHHhhhcCCChHHHHH
Q 004857 609 GKSYERTQILSKLAGKIVQMSQHKYA-------SNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQ 681 (727)
Q Consensus 609 ~~~k~r~~II~~L~g~lveLs~~K~G-------S~VVEk~L~~as~k~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQ 681 (727)
+++..|+++++.|..++..|-..-.+ ...+.++|.-.+.++...++.-|... ++..+.-|..-+-
T Consensus 146 ~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l--------kl~~t~~g~qeLv 217 (507)
T 3u0r_A 146 GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGL--------KSLQTVSGRQQLV 217 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS--------GGGSSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc--------ccccCchHHHHHH
Confidence 46778899999998888776654443 23344555556777777777554321 3444444433333
Q ss_pred HHH----------hcCCHHHHHHHHHHHHHhHHHHhcCCChHHHHHHHHH
Q 004857 682 KIL----------EKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQ 721 (727)
Q Consensus 682 klL----------~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yGk~Vv~~Lek 721 (727)
.++ +..|++.-++++..++..++-......+.+++..+-+
T Consensus 218 ~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 218 ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 333 2256778888888888888888877777666665543
No 13
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=79.87 E-value=66 Score=34.12 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=80.7
Q ss_pred hhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHh-hCH
Q 004857 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV-IEL 502 (727)
Q Consensus 424 lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~-as~ 502 (727)
+|++.++++.+.|..++. -+...++++...++++|...+..-..-..|+.-++.+++. ..+
T Consensus 30 vlk~L~~~ei~~l~~~ma------------------~l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~ 91 (329)
T 3hjl_A 30 IVKELSEEELQKLFALAK------------------DLESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPP 91 (329)
T ss_dssp HHHHSCHHHHHHHHHHHH------------------TCCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHHH------------------ccCCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCH
Confidence 445556666666655542 2345567777777777766555443322222555555543 333
Q ss_pred HHHHHHHHHHHHH----------------HHHHhhcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHH
Q 004857 503 HQKSQLVLELDGH----------------VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566 (727)
Q Consensus 503 eqr~~Lv~EL~g~----------------i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQ 566 (727)
+.-..|++++.+. +..++.+.+- -++--+|.+.+++.-..|+..|-+. .-..|+.
T Consensus 92 ~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~EhP-QtiAlILs~L~p~~AA~vL~~Lp~~--------~r~ev~~ 162 (329)
T 3hjl_A 92 TLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHP-QTIALFLSQLSPKKSAEIIQNLPEE--------LKKEVVK 162 (329)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTSCH-HHHHHHHTTSCHHHHHHHHHTSCHH--------HHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhCCH-HHHHHHHHcCCHHHHHHHHHhCCHH--------HHHHHHH
Confidence 3444455554432 1111211111 1222233333444333333333221 1234444
Q ss_pred HHHhhCC-cHHHHHHHHHHHHHHHHHHh----hCcCccHHHHHHHHcCCchhHHHHHHHHHHH
Q 004857 567 RVLEHCS-DEQQGQCIVDEILESAFALA----QDQYGNYVTQHVLERGKSYERTQILSKLAGK 624 (727)
Q Consensus 567 k~Le~~~-~~~~r~~Ll~eI~~~l~~La----~Dq~GNyVVQ~lLe~~~~k~r~~II~~L~g~ 624 (727)
++..... .++..+.|-+.+...+..+. ...-|.-.+-.||...+....+.|++.|...
T Consensus 163 Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L~~~ 225 (329)
T 3hjl_A 163 RIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQE 225 (329)
T ss_dssp HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 4444322 22222222222223333321 1234566777888887777777788777654
No 14
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.44 E-value=28 Score=33.62 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=124.8
Q ss_pred HHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHh
Q 004857 420 FIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 499 (727)
Q Consensus 420 vLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~ 499 (727)
.|...++.++.+..+.+++.= .-+....+..|.-.+......+..+..+.+++. ....-..+..|...+..+...
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHc
Confidence 444455555555444443321 112223366677777777777777766666543 111223455666666666655
Q ss_pred hCHHHHHHHHHHHHHHHH-HHhhcccCchhhhHhhhcCChhHHHHHHHHhhhh-Hh------hhccCCCCchHHHHHHhh
Q 004857 500 IELHQKSQLVLELDGHVM-RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ-VA------TLSTHPYGCRVIQRVLEH 571 (727)
Q Consensus 500 as~eqr~~Lv~EL~g~i~-~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~-l~------~Ls~hk~GS~VLQk~Le~ 571 (727)
...+ +++.|..+-. --..+.+|...+...+.....+..+.+++.-..- .. .-..+..|...+......
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 4433 2332222111 1123556666666666666555555555431110 00 000144566666665555
Q ss_pred CCcHHHHHHHHHHHHHH--HHHHhhCcCccHHHHHHHHcCCchhHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHhCCHH
Q 004857 572 CSDEQQGQCIVDEILES--AFALAQDQYGNYVTQHVLERGKSYERTQILSKLAGKIVQM-SQHKYASNVVEKCLEYGDTA 648 (727)
Q Consensus 572 ~~~~~~r~~Ll~eI~~~--l~~La~Dq~GNyVVQ~lLe~~~~k~r~~II~~L~g~lveL-s~~K~GS~VVEk~L~~as~k 648 (727)
... .+++.+++. ...-..|..|...+...+..+.......+++.|..+=..+ ..++.|...+..+...+..+
T Consensus 159 ~~~-----~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 159 GHV-----EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp TCH-----HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred CCH-----HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 432 233444332 1112346677777777777777666666766665432211 23456666666666666654
Q ss_pred HHHHHHHHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHH
Q 004857 649 ERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETL 695 (727)
Q Consensus 649 ~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~L 695 (727)
. ++.|+.... ..--..|..|.-.+..+......+.-+.|
T Consensus 234 ~----v~~Ll~~~g----~~~~~~~~~g~t~l~~A~~~~~~~i~~~L 272 (285)
T 1wdy_A 234 L----VQRLLEQEH----IEINDTDSDGKTALLLAVELKLKKIAELL 272 (285)
T ss_dssp H----HHHHHHSSS----CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred H----HHHHHhccC----CCccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence 4 334443100 00113455666666665555544433333
No 15
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=57.01 E-value=97 Score=31.91 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.4
Q ss_pred HhhhcCCHHHHHHHHHHHh
Q 004857 423 QKLEHCSAEEKVSVFKEVL 441 (727)
Q Consensus 423 ~lLk~~t~Eqr~~If~EI~ 441 (727)
+.|-.+++.|.+.+++++.
T Consensus 42 ~~L~~~sp~q~e~lc~~L~ 60 (264)
T 2ilr_A 42 QLLHECSPSQMDLLCAQLQ 60 (264)
T ss_dssp HGGGGCCHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 4555599999999999885
No 16
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.62 E-value=1.1e+02 Score=28.87 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCHHHHHHHH-HHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhcCCChHH
Q 004857 636 NVVEKCLEYGDTAERELLI-EEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKH 714 (727)
Q Consensus 636 ~VVEk~L~~as~k~Rk~II-keLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yGk~ 714 (727)
.+++.|+..|.......|. ++++ +.|..|+... .+.+++++|++.|..=-......+.=..
T Consensus 74 ~LLd~~vkNcG~~Fh~evas~~Fl------~el~~l~~~~------------~~~~Vk~kil~li~~W~~~f~~~~~l~~ 135 (163)
T 1x5b_A 74 TLLGACVANCGKIFHLEVCSRDFA------TEVRAVIKNK------------AHPKVCEKLKSLMVEWSEEFQKDPQFSL 135 (163)
T ss_dssp HHHHHHHHHTCHHHHHHHTSHHHH------HHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTTCSTTHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHH------HHHHHHHccC------------CCHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788888888776664443 3333 2233344321 4567888888877777777776665566
Q ss_pred HHHHHHHHHhcC
Q 004857 715 IVARFEQLYGEG 726 (727)
Q Consensus 715 Vv~~Lekli~~g 726 (727)
|.+.-+.|...|
T Consensus 136 i~~~Y~~Lk~~G 147 (163)
T 1x5b_A 136 ISATIKSMKEEG 147 (163)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC
Confidence 777667666655
No 17
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=52.30 E-value=1.2e+02 Score=30.13 Aligned_cols=119 Identities=12% Similarity=0.212 Sum_probs=67.7
Q ss_pred cccchhhhhh--ccCCHHHHHHHHHHHhcChhhhccCc----chhHHHHHHHHhhCHHHHHHHHHHHHHH---HHHHhhc
Q 004857 452 FGNYVIQKFF--EHGSPDQRKELAEKLVGQVLPLSLQM----YGCRVIQKALEVIELHQKSQLVLELDGH---VMRCVRD 522 (727)
Q Consensus 452 fGn~VVQKLL--e~gs~eqr~~Ii~~L~G~v~~La~h~----yGSrVIQklIe~as~eqr~~Lv~EL~g~---i~~L~~D 522 (727)
.-.-|+.++. +..+++....|-+.+...+....... -|...+-.++...+.+....+++.|... +.+-+++
T Consensus 43 ~~~ev~~Ria~l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~~~d~ela~~I~~ 122 (216)
T 4fhr_B 43 LQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRR 122 (216)
T ss_dssp GHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344455543 44577877777777776665544332 3667788888888888877777666432 2222221
Q ss_pred ccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCC
Q 004857 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573 (727)
Q Consensus 523 ~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~ 573 (727)
. -++...++ ..++..++.|+..+-.....++..--.-.+.+++|.+.+
T Consensus 123 ~--mF~Fedl~-~ld~~~iq~llr~v~~~~L~~ALKga~~e~~e~il~nmS 170 (216)
T 4fhr_B 123 R--MFVFEDIL-KLDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMS 170 (216)
T ss_dssp H--HSCGGGGG-GSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHTTSC
T ss_pred H--hcCHHHHh-CCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 1 13333443 235555666666655555555555555566677777665
No 18
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=51.16 E-value=1e+02 Score=29.97 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=33.9
Q ss_pred CCCccHHHHHhhhcCCHHHHHHHHHHHhhchhh-----hccCccccchhhhhhcc---CCHHHHHHHHHH
Q 004857 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK-----LMTDVFGNYVIQKFFEH---GSPDQRKELAEK 475 (727)
Q Consensus 414 dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~e-----L~tD~fGn~VVQKLLe~---gs~eqr~~Ii~~ 475 (727)
|..|...|-...+.++.+..+.+++.....-.. ..+|..|.-.+.....+ +..+..+.|++.
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 445555555566666666555555544322222 24567777777666654 555555555554
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=50.63 E-value=2.8e+02 Score=30.27 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHH-HhhchhhhccCcccc
Q 004857 427 HCSAEEKVSVFKE-VLPHASKLMTDVFGN 454 (727)
Q Consensus 427 ~~t~Eqr~~If~E-I~~~~~eL~tD~fGn 454 (727)
.++.+++..|++. ..+.++.|..+....
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~ 177 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHAH 177 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 4566666666654 566777777665543
No 20
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=47.43 E-value=1.3e+02 Score=27.55 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHhHHHHhcCCChHHHHHHHHHHHhcC
Q 004857 685 EKCNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 726 (727)
Q Consensus 685 ~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yGk~Vv~~Lekli~~g 726 (727)
...+.+++++|++.|..=-...+..+.=..|.+.-++|...|
T Consensus 95 ~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 136 (140)
T 3ldz_A 95 NKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQG 136 (140)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHcc
Confidence 345778999999988887778887776677777777777666
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=46.44 E-value=3.2e+02 Score=29.73 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHH-HhhchhhhccCcc
Q 004857 427 HCSAEEKVSVFKE-VLPHASKLMTDVF 452 (727)
Q Consensus 427 ~~t~Eqr~~If~E-I~~~~~eL~tD~f 452 (727)
.++.+++..|++. ..+.++.|..+..
T Consensus 130 s~~~e~~~~vv~~GaIp~Lv~lL~s~~ 156 (510)
T 3ul1_B 130 SGTSEQTKAVVDGGAIPAFISLLASPH 156 (510)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 4677777777764 5666777666543
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.20 E-value=1.3e+02 Score=28.06 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=51.5
Q ss_pred cCCCccHHHHHhhhcCCHHHHHHHHHHHhhc-hhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhH
Q 004857 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH-ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCR 491 (727)
Q Consensus 413 ~dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~-~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSr 491 (727)
.|.+|.-.|..+.+.++.+..+.+++.+... ..--..|..|.-.+......+..+..+.+++. | ...-..+..|..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--G-ASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--C-CCccccCCCCCC
Confidence 4566666777777777777777776654332 22234567787777777777777766666542 1 112234556666
Q ss_pred HHHHHHHhhCH
Q 004857 492 VIQKALEVIEL 502 (727)
Q Consensus 492 VIQklIe~as~ 502 (727)
.+..+......
T Consensus 82 ~l~~A~~~~~~ 92 (241)
T 1k1a_A 82 AAHLACEHRSP 92 (241)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHcCCH
Confidence 66666655443
No 23
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=45.52 E-value=1.3e+02 Score=33.64 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=86.1
Q ss_pred HHHHhcCCCccH---HHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhc
Q 004857 408 IVEFSVDQHGSR---FIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 484 (727)
Q Consensus 408 IveLa~dq~gSR---vLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La 484 (727)
+..+|.+.+-+| ||=++|....+.|+..|-..+...+..=.+...+....| |..+.+..|+.+++.+..++..|-
T Consensus 89 Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~--i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 89 LPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ--ILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp GGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH--HcccchHHHHHHHHHHHHHHhhcc
Confidence 345566655666 456677777778877776665544432222222221111 222567888888888888888877
Q ss_pred cCcchhHH-------HHHHHHhhCHHHHHHHHHHH-----------HHHHHHHhhcccCchhhhHhhhcCChhHHHHHHH
Q 004857 485 LQMYGCRV-------IQKALEVIELHQKSQLVLEL-----------DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 546 (727)
Q Consensus 485 ~h~yGSrV-------IQklIe~as~eqr~~Lv~EL-----------~g~i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~ 546 (727)
..-.+..+ |.++++-++.++...+++-| ...+.+++.++-+ +..-+...+.+..+.++.
T Consensus 167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~---L~~~f~~sD~e~vdRlI~ 243 (507)
T 3u0r_A 167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQAD---LEQTFNPSDPDCVDRLLQ 243 (507)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHT---TTSCCCSSCHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHh---ccCCCCCcCHHHHHHHHH
Confidence 76655432 33444445565555444333 0112223222200 001112235667777888
Q ss_pred HhhhhHhhhccCCCCchHHHHHHh
Q 004857 547 AFRGQVATLSTHPYGCRVIQRVLE 570 (727)
Q Consensus 547 ~L~~~l~~Ls~hk~GS~VLQk~Le 570 (727)
.+...+.-++....++..+.-+.+
T Consensus 244 C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 244 CTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCChHHHHHHHHH
Confidence 777777777777666666554444
No 24
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=43.65 E-value=1.9e+02 Score=26.68 Aligned_cols=124 Identities=9% Similarity=0.042 Sum_probs=62.1
Q ss_pred CCCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHH
Q 004857 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493 (727)
Q Consensus 414 dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVI 493 (727)
|.+|.-.|..+...+..+-.+.+++. ..---..+..|...+...+..+..+..+.+++.-. ...-..+..|...+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L 96 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA--TDLDARMHDGTTPL 96 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT--SCTTCCCTTCCCHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCcHH
Confidence 34444455555666665544444332 11122456777777777777777776666655321 11123345565555
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHH-HHhhcccCchhhhHhhhcCChhHHHHHHH
Q 004857 494 QKALEVIELHQKSQLVLELDGHVM-RCVRDQNGNHVIQKCIECVPAEKIEFIIS 546 (727)
Q Consensus 494 QklIe~as~eqr~~Lv~EL~g~i~-~L~~D~~GNhVIQklLe~~~~e~~~~Ii~ 546 (727)
..+......+ +++.|..+-. --..|.+|...+.........+..+.+++
T Consensus 97 ~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 97 ILAARLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 5555544432 3332222111 11235556666666666555555555544
No 25
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=43.55 E-value=2.2e+02 Score=29.40 Aligned_cols=152 Identities=9% Similarity=0.126 Sum_probs=92.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHhh----chhhhccCccccchhhhhhc--cCCHHHHHHHHHHHhcChhhh---ccCcch
Q 004857 419 RFIQQKLEHCSAEEKVSVFKEVLP----HASKLMTDVFGNYVIQKFFE--HGSPDQRKELAEKLVGQVLPL---SLQMYG 489 (727)
Q Consensus 419 RvLQ~lLk~~t~Eqr~~If~EI~~----~~~eL~tD~fGn~VVQKLLe--~gs~eqr~~Ii~~L~G~v~~L---a~h~yG 489 (727)
+.|-.+|+...+.....|+..+.+ .++...-...-.-|+.++.. ..+++....|-+.+...+..+ ....-|
T Consensus 64 ~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG 143 (279)
T 3pkr_A 64 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGG 143 (279)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCc
Confidence 444555555555555555554443 22333333444455555543 346777666666665544433 455667
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHH---HHHHhhcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHH
Q 004857 490 CRVIQKALEVIELHQKSQLVLELDGH---VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566 (727)
Q Consensus 490 SrVIQklIe~as~eqr~~Lv~EL~g~---i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQ 566 (727)
...+-.++...+......+++.|... +.+-+++. -++...++ ..++..++.|++.+-.....++..--.--+-+
T Consensus 144 ~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~--MF~FeDl~-~lddr~iq~llreV~~~~L~~ALKGa~~elre 220 (279)
T 3pkr_A 144 LRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEM--MFTFEDIV-KLDNFAIREILKVADKKDLSLALKTSTKDLTD 220 (279)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTT--SCCGGGGG-GSCHHHHHHHHHHSCHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHh--ccCHHHHh-cCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHH
Confidence 88888999999888888888776433 33333322 24555555 34677778888887777777777666666777
Q ss_pred HHHhhCC
Q 004857 567 RVLEHCS 573 (727)
Q Consensus 567 k~Le~~~ 573 (727)
++|.+.+
T Consensus 221 kil~nmS 227 (279)
T 3pkr_A 221 KFLNNMS 227 (279)
T ss_dssp HHHTTSC
T ss_pred HHHHhcC
Confidence 8887766
No 26
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=42.21 E-value=49 Score=33.38 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=8.3
Q ss_pred hhhcCCHHHHHHHHHHH
Q 004857 424 KLEHCSAEEKVSVFKEV 440 (727)
Q Consensus 424 lLk~~t~Eqr~~If~EI 440 (727)
+|+..+++++..||+.+
T Consensus 39 ~l~~L~~~~~~~v~~~l 55 (278)
T 2yvy_A 39 LWDELKGEHRYVVLTLL 55 (278)
T ss_dssp GGGGSCHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHhC
Confidence 44444555555555444
No 27
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=37.92 E-value=2.7e+02 Score=28.59 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCchH
Q 004857 600 YVTQHVLERGKSYERTQILSKLAGKIVQMSQHKYA 634 (727)
Q Consensus 600 yVVQ~lLe~~~~k~r~~II~~L~g~lveLs~~K~G 634 (727)
+++..+|+..+...+..+++.+.+.++.+..+++-
T Consensus 55 ~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dE 89 (265)
T 3b2a_A 55 VALGEILKRADSDLRMMVLERHLDVFINALSQENE 89 (265)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHhccch
Confidence 45555555555556666666666666666655543
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=37.72 E-value=1.9e+02 Score=26.80 Aligned_cols=119 Identities=14% Similarity=-0.001 Sum_probs=55.4
Q ss_pred HHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhC
Q 004857 422 QQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501 (727)
Q Consensus 422 Q~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as 501 (727)
..+...++.+..+.+++.-. -.....|..|...+......+..+..+.+++.-..--.....+..|...+..+.....
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 84 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN 84 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHCG--GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHhcCc--cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCC
Confidence 33444555444444443211 1122367778888877777777776666655421111111245566656655555443
Q ss_pred HHHHHHHHHHHHHH---HHHHhhcccCchhhhHhhhcCChhHHHHHHH
Q 004857 502 LHQKSQLVLELDGH---VMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 546 (727)
Q Consensus 502 ~eqr~~Lv~EL~g~---i~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~ 546 (727)
.+ +++.|..+ ...-..+..|...+...+.....+..+.+++
T Consensus 85 ~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 85 LE----VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp HH----HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HH----HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 32 33333221 1111234445555555555444444444433
No 29
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.12 E-value=1.2e+02 Score=29.00 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=59.4
Q ss_pred ccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhcc------------CCCCchHHHHHHhhCCcHHHHHHHHHHHHH---
Q 004857 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLST------------HPYGCRVIQRVLEHCSDEQQGQCIVDEILE--- 587 (727)
Q Consensus 523 ~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~------------hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~--- 587 (727)
.+|...+...+.....+..+.+++. +.-..... +.+|...|........ ..+++.+++
T Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-----~~~v~~Ll~~~~ 160 (256)
T 2etb_A 88 YQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ-----WDVVTYLLENPH 160 (256)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC-----HHHHHHHHHCSS
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCC-----HHHHHHHHhccc
Confidence 4466666666665555555555543 11011111 1136666665555433 124444444
Q ss_pred H-HHHHhhCcCccHHHHHHHHcC--Cchh---HHHHHHHHHHHHHHH--------hcCchHHHHHHHHHHhCCHHHHHHH
Q 004857 588 S-AFALAQDQYGNYVTQHVLERG--KSYE---RTQILSKLAGKIVQM--------SQHKYASNVVEKCLEYGDTAERELL 653 (727)
Q Consensus 588 ~-l~~La~Dq~GNyVVQ~lLe~~--~~k~---r~~II~~L~g~lveL--------s~~K~GS~VVEk~L~~as~k~Rk~I 653 (727)
. ...-..|..|.-.+......+ ..+. ..++++.|..+=..+ ..++.|...+..+...+..+..+.+
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 1 112245677877777777632 2221 122555555443443 3556666666666665554443333
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=35.57 E-value=3.1e+02 Score=35.09 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=37.8
Q ss_pred ChhhhHHHHHhhccccccchHHhHHHHHHHHhcCCCccHHHHHhhhcCCHHHH
Q 004857 381 DSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEK 433 (727)
Q Consensus 381 d~~r~~LLeeL~~~~~~~~~L~~I~GkIveLa~dq~gSRvLQ~lLk~~t~Eqr 433 (727)
++....|...|...+...+.+..|...+.+.-.-|.+..+|+..|+...+|+-
T Consensus 526 P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~ 578 (1630)
T 1xi4_A 526 PDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEG 578 (1630)
T ss_pred hHHHHHHHHHHhcCCCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhh
Confidence 34455666666555445666777777777777778889999999998877654
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.30 E-value=2.1e+02 Score=26.39 Aligned_cols=123 Identities=12% Similarity=-0.007 Sum_probs=59.0
Q ss_pred CCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHH
Q 004857 415 QHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494 (727)
Q Consensus 415 q~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQ 494 (727)
.++...|...++.++.+..+.+++.= .---..+..|.-.+...+..+..+..+.+++. +.-........|...+.
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcC---CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhH
Confidence 34444455566666655444444321 11124466777777777777777666666553 22222233344555555
Q ss_pred HHHHhhCHHHHHHHHHHHHHHH-HHHhhcccCchhhhHhhhcCChhHHHHHHH
Q 004857 495 KALEVIELHQKSQLVLELDGHV-MRCVRDQNGNHVIQKCIECVPAEKIEFIIS 546 (727)
Q Consensus 495 klIe~as~eqr~~Lv~EL~g~i-~~L~~D~~GNhVIQklLe~~~~e~~~~Ii~ 546 (727)
.++.....+ +++.|...- ..-..+..|...+...+.....+..+.+++
T Consensus 82 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 82 WATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 555544432 222222110 011234555556666665555554444444
No 32
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=35.22 E-value=2.1e+02 Score=27.27 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=98.3
Q ss_pred HHHhhhcCCHHHHHHHHHHHhhchhhh-----ccCccccchhhhhhcc---CCHHHHHHHHHHHhcC--hhhh------c
Q 004857 421 IQQKLEHCSAEEKVSVFKEVLPHASKL-----MTDVFGNYVIQKFFEH---GSPDQRKELAEKLVGQ--VLPL------S 484 (727)
Q Consensus 421 LQ~lLk~~t~Eqr~~If~EI~~~~~eL-----~tD~fGn~VVQKLLe~---gs~eqr~~Ii~~L~G~--v~~L------a 484 (727)
|-...+.++.+..+.+++.+..+-..+ ..|..|.-.+...... +..+..+.+++.-... +..+ .
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 344445555555555555444333222 2577787777777776 6666666666542110 1100 1
Q ss_pred cCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-hhcc-------------cCchhhhHhhhcCChhHHHHHHHHhhh
Q 004857 485 LQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC-VRDQ-------------NGNHVIQKCIECVPAEKIEFIISAFRG 550 (727)
Q Consensus 485 ~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L-~~D~-------------~GNhVIQklLe~~~~e~~~~Ii~~L~~ 550 (727)
.+..|.-.+..+......+ +++.|..+-..+ ..+. +|...+.........+..+.+++....
T Consensus 86 ~d~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQ----CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccCCCHHHHHHHcCCHH----HHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 2245666666666555433 333332221111 1222 266677666666666666666552100
Q ss_pred hHhhhccCCCCchHHHHHHhhCCcHHH----HHHHHHHHHHHHHHH--------hhCcCccHHHHHHHHcCCchhHHHHH
Q 004857 551 QVATLSTHPYGCRVIQRVLEHCSDEQQ----GQCIVDEILESAFAL--------AQDQYGNYVTQHVLERGKSYERTQIL 618 (727)
Q Consensus 551 ~l~~Ls~hk~GS~VLQk~Le~~~~~~~----r~~Ll~eI~~~l~~L--------a~Dq~GNyVVQ~lLe~~~~k~r~~II 618 (727)
...--..+..|.-.+..+......... ...+++.+++.-..+ ..|..|.-.+....+.+..+..+.|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 111123466787777777663222111 112555555554444 57888888888777776644444443
No 33
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.90 E-value=2.4e+02 Score=25.47 Aligned_cols=118 Identities=9% Similarity=0.006 Sum_probs=54.9
Q ss_pred cCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCchh
Q 004857 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHV 528 (727)
Q Consensus 449 tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNhV 528 (727)
.|..|.-.+......+..+..+.+++. | ..--..+..|...+..+......+-...|++.- ....-..+.+|...
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~ 109 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIAKALIDR--G-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHA--TPDLNKHNRYGGNA 109 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT--T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS--CCCTTCCCTTSCCS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc--CcccccccCCCCcH
Confidence 466777777777777776666666543 1 111224455555555555544433222222110 00111234555555
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCC
Q 004857 529 IQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCS 573 (727)
Q Consensus 529 IQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~ 573 (727)
+.........+..+.+++.-. ..--..+..|...+........
T Consensus 110 L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSC
T ss_pred HHHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhcc
Confidence 555555555555555444311 1111234455555555554443
No 34
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.49 E-value=2.5e+02 Score=26.72 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=88.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHhhchhh-----hccCccccchhhhhh---ccCCHHHHHHHHHHHhc--Chh------h
Q 004857 419 RFIQQKLEHCSAEEKVSVFKEVLPHASK-----LMTDVFGNYVIQKFF---EHGSPDQRKELAEKLVG--QVL------P 482 (727)
Q Consensus 419 RvLQ~lLk~~t~Eqr~~If~EI~~~~~e-----L~tD~fGn~VVQKLL---e~gs~eqr~~Ii~~L~G--~v~------~ 482 (727)
..|-...+.++.+..+.+++.+..+-.. ...+..|.-.+.... ..+..+..+.+++.-.. .+. -
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 3444555566666555555544332222 223355776666555 45555555555554211 111 1
Q ss_pred hccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-hhc--------------ccCchhhhHhhhcCChhHHHHHHHH
Q 004857 483 LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC-VRD--------------QNGNHVIQKCIECVPAEKIEFIISA 547 (727)
Q Consensus 483 La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L-~~D--------------~~GNhVIQklLe~~~~e~~~~Ii~~ 547 (727)
-..+..|.-.+..+......+ +++.|..+-..+ ..+ .+|...+.........+..+.+++.
T Consensus 87 ~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 87 RDVYYRGQTALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CCSSEESBCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccCCCCHHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 112235666666666554433 233222211111 122 3566666666665555555555541
Q ss_pred hhhhHhhhccCCCCchHHHHHHhhCCcHHHH----HHHHHHHHHHHHHH--------hhCcCccHHHHHHHHcCCc
Q 004857 548 FRGQVATLSTHPYGCRVIQRVLEHCSDEQQG----QCIVDEILESAFAL--------AQDQYGNYVTQHVLERGKS 611 (727)
Q Consensus 548 L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r----~~Ll~eI~~~l~~L--------a~Dq~GNyVVQ~lLe~~~~ 611 (727)
-.....--..+..|.-.+..+.......... ..+++.+++.-..+ +.|..|.-.+....+.+..
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 0000111134566776776666544321111 23444455544443 4666777666666666543
No 35
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=33.42 E-value=4.5e+02 Score=27.66 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=26.3
Q ss_pred CChHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHh
Q 004857 674 QYANYVVQKILEKCNEKLRETLISRIRVHCDALK 707 (727)
Q Consensus 674 qyGnyVVQklL~~~d~~~Rk~Ll~~Lk~~l~~L~ 707 (727)
.-|...+-.+|...+....+.|++.|..+=++|.
T Consensus 197 ~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela 230 (329)
T 3hjl_A 197 LEGTAVAAELLNTLDKETRELILQSIGQEDPLLE 230 (329)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHH
T ss_pred cccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHH
Confidence 4577888888988888888888888876655554
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=31.94 E-value=5e+02 Score=27.74 Aligned_cols=291 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred ccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccC------ccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCc---
Q 004857 417 GSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTD------VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQM--- 487 (727)
Q Consensus 417 gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD------~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~--- 487 (727)
+...|..+.+...++. +...+.+-+.+++.+ ..+-.++..+..+.....+..++..+. .++.+.
T Consensus 107 a~~~L~~l~~~~~~~~---~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~----~l~~d~~~~ 179 (588)
T 1b3u_A 107 AVESLRAISHEHSPSD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR----NLCSDDTPM 179 (588)
T ss_dssp HHHHHHHHHTTSCHHH---HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHH----HHHTCSCHH
T ss_pred HHHHHHHHHHHCCHHH---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----HHhCCCCHH
Q ss_pred ---chhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCch---hhhHhhhcCChhHHHHHHHHhhhhHhhhccCCC-
Q 004857 488 ---YGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH---VIQKCIECVPAEKIEFIISAFRGQVATLSTHPY- 560 (727)
Q Consensus 488 ---yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNh---VIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~- 560 (727)
.++..+..+.+....+ ....++.+.+..++.|..... .+..+-.....-....+.+.+...+..+..++.
T Consensus 180 VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 256 (588)
T 1b3u_A 180 VRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256 (588)
T ss_dssp HHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCH
Q ss_pred -----CchHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhhCcC------ccHHHHHHHHcCCchhHH-HHHHHHHHHHHHH
Q 004857 561 -----GCRVIQRVLEHCSDEQQGQCIVDEILESAFALAQDQY------GNYVTQHVLERGKSYERT-QILSKLAGKIVQM 628 (727)
Q Consensus 561 -----GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~~La~Dq~------GNyVVQ~lLe~~~~k~r~-~II~~L~g~lveL 628 (727)
.+..+-.+.+....+ .+...+...+..+++|.. ....+..+.+...++.+. .....+.+.+..+
T Consensus 257 ~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 257 RVRYMVADKFTELQKAVGPE----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp HHHHHHHHTHHHHHHHHCHH----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc----cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Q ss_pred hcCc--------------------------hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCChhHHHhhhcCCChHHHHHH
Q 004857 629 SQHK--------------------------YASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQK 682 (727)
Q Consensus 629 s~~K--------------------------~GS~VVEk~L~~as~k~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQk 682 (727)
..++ .-..++..++...++..|...+..+- .-...+..+.+-..++..
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~------~l~~~~~~~~~~~~~lp~ 406 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD------CVNEVIGIRQLSQSLLPA 406 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCH------HHHHHSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH------HHHHhcCHHHHHHHHHHH
Q ss_pred HHhcCCHH---HHHHHHHHHHHhHHHHhcCCChHHHHHHHHHHHhcCC
Q 004857 683 ILEKCNEK---LRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEGA 727 (727)
Q Consensus 683 lL~~~d~~---~Rk~Ll~~Lk~~l~~L~~~~yGk~Vv~~Lekli~~g~ 727 (727)
++....+. .|..+++.|..-...+....+-..++..+.++..+..
T Consensus 407 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 454 (588)
T 1b3u_A 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV 454 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.75 E-value=3.2e+02 Score=25.38 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=30.6
Q ss_pred cCccccchhhhhhccCCHHHHHHHHHHHhcChh--hhccCcchhHHHHHHHHhhCH
Q 004857 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVL--PLSLQMYGCRVIQKALEVIEL 502 (727)
Q Consensus 449 tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~--~La~h~yGSrVIQklIe~as~ 502 (727)
.|..|.-.+......+..+..+.+++.-..-.. .-..+..|...+..+......
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 88 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCH
Confidence 467777777777777777766666654222111 123345666666555555443
No 38
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.25 E-value=2.3e+02 Score=26.41 Aligned_cols=75 Identities=16% Similarity=0.331 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCHHHHHHH-HHHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhcCCChHH
Q 004857 636 NVVEKCLEYGDTAERELL-IEEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGKH 714 (727)
Q Consensus 636 ~VVEk~L~~as~k~Rk~I-IkeLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yGk~ 714 (727)
.+++.|.+.|.......| -++++ +.|.+++.++|.. +..+.++|++|++.|..=-..+...+ .
T Consensus 70 ~LLe~cvkNCG~~fh~eias~~Fl------~eL~kl~~~k~~~-------~~~~~~Vk~kil~li~~W~~~f~~~p---~ 133 (149)
T 3g2s_A 70 TVLETCMKSCGKRFHDEVGKFRFL------NELIKVVSPKYLG-------SRTSEKVKNKILELLYSWTVGLPEEV---K 133 (149)
T ss_dssp HHHHHHHHHCCHHHHHHHTSHHHH------HHHHHHHCTTTTG-------GGSCHHHHHHHHHHHHHHHHHCTTCH---H
T ss_pred HHHHHHHHhcCHHHHHHHhhHHHH------HHHHHHHcccccC-------CCCCHHHHHHHHHHHHHHHHHhCCCc---h
Confidence 578888888887654433 33344 3356677766520 23567788888888877666665433 3
Q ss_pred HHHHHHHHHhcC
Q 004857 715 IVARFEQLYGEG 726 (727)
Q Consensus 715 Vv~~Lekli~~g 726 (727)
|.+.-+.|...|
T Consensus 134 i~~~Y~~Lk~~G 145 (149)
T 3g2s_A 134 IAEAYQMLKKQG 145 (149)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc
Confidence 666666666655
No 39
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.22 E-value=1.6e+02 Score=27.45 Aligned_cols=188 Identities=13% Similarity=0.030 Sum_probs=100.3
Q ss_pred ccCccccchhhhhhccCCHHHHHHHHHHHhcC-hhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHH-HHHhhcccC
Q 004857 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV-MRCVRDQNG 525 (727)
Q Consensus 448 ~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~-v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i-~~L~~D~~G 525 (727)
.+|..|.-.+.....++..+..+.+++.+... ..--..+..|...+..++.....+ +++.|..+- ..-..+.+|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g 79 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHG 79 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTS
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCC
Confidence 46888999999999999999888888865432 222345667777777777665543 333332211 112346677
Q ss_pred chhhhHhhhcCChhHHHHHHHHhhhhH-hhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHHHHHH-hhC-cCccHHH
Q 004857 526 NHVIQKCIECVPAEKIEFIISAFRGQV-ATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAFAL-AQD-QYGNYVT 602 (727)
Q Consensus 526 NhVIQklLe~~~~e~~~~Ii~~L~~~l-~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~~L-a~D-q~GNyVV 602 (727)
...+...+.....+..+.+++.....- .--..+..|...+........ ..+++.+++.-..+ ..+ ..|...+
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L 154 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPL 154 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHH
Confidence 777777777777766666666533211 112234556666666655533 12344444332111 123 4566666
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHhCCHH
Q 004857 603 QHVLERGKSYERTQILSKLAGKIVQM-SQHKYASNVVEKCLEYGDTA 648 (727)
Q Consensus 603 Q~lLe~~~~k~r~~II~~L~g~lveL-s~~K~GS~VVEk~L~~as~k 648 (727)
......+..+ +++.|..+=..+ ..+..|...+..+...+..+
T Consensus 155 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 197 (241)
T 1k1a_A 155 IHAVENNSLS----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197 (241)
T ss_dssp HHHHHTTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 6666655433 333332221111 13445555566555555544
No 40
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=30.15 E-value=1.2e+02 Score=28.34 Aligned_cols=78 Identities=12% Similarity=0.313 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhcCCCh
Q 004857 634 ASNVVEKCLEYGDTAERELLI-EEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYG 712 (727)
Q Consensus 634 GS~VVEk~L~~as~k~Rk~II-keLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yG 712 (727)
+=.+++.|.+.|.......|. ++++. +.|.+++.+++ ....++|++|++.|..=-..++..+-=
T Consensus 74 AL~LLe~cvkNCG~~fh~eiask~Fl~-----e~L~kl~~~~~----------~~~~~Vk~kil~li~~Wa~~F~~~p~l 138 (152)
T 3rru_A 74 TLSLIDMCVQNCGPSFQSLIVKKEFVK-----ENLVKLLNPRY----------NLPLDIQNRILNFIKTWSQGFPGGVDV 138 (152)
T ss_dssp HHHHHHHHHHHSCHHHHHHHSSHHHHT-----TTTGGGGSGGG----------CCCHHHHHHHHHHHHHHHTCCSSSCCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhHhHH-----HHHHHHhcCCC----------CCcHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 345888899888877655543 34442 22445555543 234567778877777666666555544
Q ss_pred HHHHHHHHHHHhcC
Q 004857 713 KHIVARFEQLYGEG 726 (727)
Q Consensus 713 k~Vv~~Lekli~~g 726 (727)
..|...-+.|...|
T Consensus 139 ~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 139 SEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHCc
Confidence 66777767666655
No 41
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=29.45 E-value=4.1e+02 Score=26.03 Aligned_cols=123 Identities=9% Similarity=-0.048 Sum_probs=62.0
Q ss_pred CCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHH
Q 004857 415 QHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494 (727)
Q Consensus 415 q~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQ 494 (727)
..+...|....+.++.+....++.+. ...--..|.+|.-.+.....++..+..+.+++. | ..--..+..|...+.
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g-~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPL--NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--G-ADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTT--TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTCCCHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhc--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCccCCCCCcHHH
Confidence 33444555556666666554444321 112224567777777777777777766666553 1 111234456666666
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHH-HHhhcccCchhhhHhhhcCChhHHHHHHH
Q 004857 495 KALEVIELHQKSQLVLELDGHVM-RCVRDQNGNHVIQKCIECVPAEKIEFIIS 546 (727)
Q Consensus 495 klIe~as~eqr~~Lv~EL~g~i~-~L~~D~~GNhVIQklLe~~~~e~~~~Ii~ 546 (727)
.+......+ +++.|..+-. --..+.+|...+...+.....+..+.+++
T Consensus 97 ~A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 97 NACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 666554433 2222222110 11234556566666666555555555544
No 42
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=28.42 E-value=2.9e+02 Score=27.11 Aligned_cols=83 Identities=7% Similarity=-0.147 Sum_probs=42.6
Q ss_pred cCCCccHHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHH
Q 004857 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRV 492 (727)
Q Consensus 413 ~dq~gSRvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrV 492 (727)
.|..|.-.|......++.+-.+.+++. ..---..|..|.-.+......+..+..+.+++. | ..--..+..|...
T Consensus 55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g-a~~~~~~~~g~t~ 128 (285)
T 3d9h_A 55 DAVSDWSPMHEAAIHGHQLSLRNLISQ---GWAVNIITADHVSPLHEACLGGHLSCVKILLKH--G-AQVNGVTADWHTP 128 (285)
T ss_dssp SSCCSCCHHHHHHHTTCHHHHHHHHHT---TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT--T-CCSSCCCTTCCCH
T ss_pred CCccCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--C-CCCCCCCCCCCCH
Confidence 344554555555566665544444332 111224567777777777777777666655543 1 1112334555555
Q ss_pred HHHHHHhhC
Q 004857 493 IQKALEVIE 501 (727)
Q Consensus 493 IQklIe~as 501 (727)
+..+.....
T Consensus 129 L~~A~~~~~ 137 (285)
T 3d9h_A 129 LFNACVSGS 137 (285)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCH
Confidence 555554433
No 43
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=26.96 E-value=2.2e+02 Score=29.49 Aligned_cols=51 Identities=8% Similarity=0.264 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHhhhhHhhhc---cCCCCchHHHHHHhhCCcHHHHHHHHHHHHH
Q 004857 536 VPAEKIEFIISAFRGQVATLS---THPYGCRVIQRVLEHCSDEQQGQCIVDEILE 587 (727)
Q Consensus 536 ~~~e~~~~Ii~~L~~~l~~Ls---~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~ 587 (727)
.+++..+.|-+.|...+..+. ...-|...+-.+|...... ..+.|++.|.+
T Consensus 115 v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~-~e~~iL~~L~~ 168 (279)
T 3pkr_A 115 ISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQK-SAKTTLARIES 168 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHH-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChH-HHHHHHHHHHh
Confidence 445555555555544443332 2334667777777776543 44556666654
No 44
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.19 E-value=3.9e+02 Score=24.81 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHhcCCCChhHHHhhhcCCChHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhcCCCh
Q 004857 634 ASNVVEKCLEYGDTAERELLI-EEILGQSEENDNLLVMMKDQYANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYG 712 (727)
Q Consensus 634 GS~VVEk~L~~as~k~Rk~II-keLl~~~~~~e~L~~La~DqyGnyVVQklL~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yG 712 (727)
+=.+++.|++.|.......|. ++++. +-|..++...+ ....++|++|++.|..=-..++..+-=
T Consensus 74 AL~LLd~~vkNcG~~fh~eva~~~fl~-----e~Lvk~~~~k~----------~~~~~Vk~kil~li~~W~~~f~~~p~l 138 (157)
T 1elk_A 74 ALTVLETCVKNCGHRFHVLVASQDFVE-----SVLVRTILPKN----------NPPTIVHDKVLNLIQSWADAFRSSPDL 138 (157)
T ss_dssp HHHHHHHHHHHSCHHHHHHHTSHHHHH-----HHTHHHHSTTT----------CCCHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhCHHHHHHHhhHHHHH-----HHHHHHhccCC----------CCcHHHHHHHHHHHHHHHHHcCCCcch
Confidence 346778888887766544332 22221 10222322111 123568888888888877777766655
Q ss_pred HHHHHHHHHHHhcC
Q 004857 713 KHIVARFEQLYGEG 726 (727)
Q Consensus 713 k~Vv~~Lekli~~g 726 (727)
+.|.+.-+.|...|
T Consensus 139 ~~i~~~Y~~Lk~~G 152 (157)
T 1elk_A 139 TGVVTIYEDLRRKG 152 (157)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 66777777776655
No 45
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=25.33 E-value=6.5e+02 Score=26.91 Aligned_cols=34 Identities=12% Similarity=0.349 Sum_probs=22.7
Q ss_pred HhhccccccchHHhHHHHHHHHhcCCCccHHHHH
Q 004857 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423 (727)
Q Consensus 390 eL~~~~~~~~~L~~I~GkIveLa~dq~gSRvLQ~ 423 (727)
++.........++++.-.|..+|....|..+-+.
T Consensus 43 ~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~ 76 (410)
T 4ap2_B 43 EIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTG 76 (410)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 3444444556788888888888888776654433
No 46
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=24.74 E-value=1.1e+02 Score=33.58 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=20.7
Q ss_pred HhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHH
Q 004857 423 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKL 476 (727)
Q Consensus 423 ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L 476 (727)
.+|+..+++++..+|+++.+. ....+|++.+++.+..+++.+
T Consensus 58 ~ll~~L~~~~~~~v~~~L~~~------------~~~evl~~l~~~~~~~ll~~l 99 (473)
T 2zy9_A 58 ALWDELKGEHRYVVLTLLPKA------------KAAEVLSHLSPEEQAEYLKTL 99 (473)
T ss_dssp HGGGGSCHHHHHHHHHHSCHH------------HHHHHTTSSCHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHhCCHH------------HHHHHHHcCCHHHHHHHHHcC
Confidence 344444555555555444332 233455555555555555554
No 47
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.73 E-value=3.3e+02 Score=24.99 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=108.9
Q ss_pred cCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHH--HHhhcccCc
Q 004857 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVM--RCVRDQNGN 526 (727)
Q Consensus 449 tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~--~L~~D~~GN 526 (727)
.|.+|...+...+.++..+..+.+++.- ..--..+..|...+..++.....+ +++.|..+-. ....+..|.
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNS 77 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTB
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcC---CCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCC
Confidence 4678888888889999988877777631 112244567777777777665543 3333322211 112233466
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHHHH-HHhhCcCccHHHHHH
Q 004857 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILESAF-ALAQDQYGNYVTQHV 605 (727)
Q Consensus 527 hVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~l~-~La~Dq~GNyVVQ~l 605 (727)
..+...+.....+..+.+++. ...--..+..|...+..++..... .+++.+++.-. .-..+..|...+...
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~-----~~~~~Ll~~~~~~~~~~~~g~t~l~~a 149 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKY---GADPSLIDGEGCSCIHLAAQFGHT-----SIVAYLIAKGQDVDMMDQNGMTPLMWA 149 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCH-----HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ChhHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCHH-----HHHHHHHhcCCCccccCCCCCcHHHHH
Confidence 666666666665555555543 111122355676677766665432 23444443211 113455565555555
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHh-cCc-hHHHHHHHHHHhCCHHHHHHHHHHHhcCCCChhHHHhhhcCCChHHHHHHH
Q 004857 606 LERGKSYERTQILSKLAGKIVQMS-QHK-YASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKI 683 (727)
Q Consensus 606 Le~~~~k~r~~II~~L~g~lveLs-~~K-~GS~VVEk~L~~as~k~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQkl 683 (727)
........ +++.|...-..+. .+. .|...+..+...+..+..+.+++. +.+ --..|..|.-.+..+
T Consensus 150 ~~~~~~~~---~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~-------~~~~~~~g~t~l~~A 217 (240)
T 3eu9_A 150 AYRTHSVD---PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GAN-------VDAQNIKGESALDLA 217 (240)
T ss_dssp HHHCCSST---THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCC-------TTCBCTTSCBHHHHH
T ss_pred HHhCChHH---HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCC-------CCCcCCCCCCHHHHH
Confidence 54333221 1111211111111 111 344455555555555443333332 110 124566666666666
Q ss_pred HhcCCHHHHHHHHH
Q 004857 684 LEKCNEKLRETLIS 697 (727)
Q Consensus 684 L~~~d~~~Rk~Ll~ 697 (727)
......+.-+.|++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 66655554444443
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.70 E-value=1.9e+02 Score=28.04 Aligned_cols=194 Identities=13% Similarity=0.092 Sum_probs=102.7
Q ss_pred cCccccchhhhhhccCCHHHHHHHHHHHhcChhhh-----ccCcchhHHHHHHHHh---hCHHHHHHHHHHHHHHH----
Q 004857 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL-----SLQMYGCRVIQKALEV---IELHQKSQLVLELDGHV---- 516 (727)
Q Consensus 449 tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~L-----a~h~yGSrVIQklIe~---as~eqr~~Lv~EL~g~i---- 516 (727)
.|.+|.-.+......+..+..+.+++.+...-..+ ..+..|.-.|..+... ...+ +++.|..+-
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~----~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND----TIALLLDVARKTD 84 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCH----HHHHHHHHHHHTT
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChH----HHHHHHHhhcccc
Confidence 45666666666666776666666666543222111 3466777777666654 2222 233222221
Q ss_pred --HHHh------hcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccC-------------CCCchHHHHHHhhCCcH
Q 004857 517 --MRCV------RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH-------------PYGCRVIQRVLEHCSDE 575 (727)
Q Consensus 517 --~~L~------~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~h-------------k~GS~VLQk~Le~~~~~ 575 (727)
..++ .|.+|...+...+.....+..+.+++. +.-...... .+|...|........
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-- 160 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ-- 160 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC--
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCC--
Confidence 1111 345787777777777776666666664 111111111 256666666655543
Q ss_pred HHHHHHHHHHHH---H-HHHHhhCcCccHHHHHHHHcCCch-hH----HHHHHHHHHHHHHH--------hcCchHHHHH
Q 004857 576 QQGQCIVDEILE---S-AFALAQDQYGNYVTQHVLERGKSY-ER----TQILSKLAGKIVQM--------SQHKYASNVV 638 (727)
Q Consensus 576 ~~r~~Ll~eI~~---~-l~~La~Dq~GNyVVQ~lLe~~~~k-~r----~~II~~L~g~lveL--------s~~K~GS~VV 638 (727)
..+++.|++ . ...-..|..|.-.+......+... .. .++++.|..+=..+ ..++.|...+
T Consensus 161 ---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL 237 (273)
T 2pnn_A 161 ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237 (273)
T ss_dssp ---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred ---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH
Confidence 124444444 1 122246778888888887765532 11 34556665554454 3677777777
Q ss_pred HHHHHhCCHHHHHHH
Q 004857 639 EKCLEYGDTAERELL 653 (727)
Q Consensus 639 Ek~L~~as~k~Rk~I 653 (727)
..+...+..+..+.|
T Consensus 238 ~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 238 ALAASSGKIGVLAYI 252 (273)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHhChHHHHHHH
Confidence 766666665443333
No 49
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=23.43 E-value=4.3e+02 Score=25.33 Aligned_cols=50 Identities=10% Similarity=-0.133 Sum_probs=24.9
Q ss_pred ccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhh
Q 004857 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500 (727)
Q Consensus 448 ~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~a 500 (727)
..|..|.-.+......+..+..+.+++. | ..--..+..|...+..+....
T Consensus 31 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g-~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 31 IITADHVSPLHEACLGGHLSCVKILLKH--G-AQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT--T-CCTTCCCTTSCCHHHHHHHHT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHC--C-CCCCCCCCCCCCHHHHHHHcC
Confidence 3455666666666666666555555443 1 111233445554444444443
No 50
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.26 E-value=2.6e+02 Score=27.63 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhHHHHhcCCChHHHHHHHHHHHhcC
Q 004857 687 CNEKLRETLISRIRVHCDALKKYTYGKHIVARFEQLYGEG 726 (727)
Q Consensus 687 ~d~~~Rk~Ll~~Lk~~l~~L~~~~yGk~Vv~~Lekli~~g 726 (727)
.+.+++++|++.|..=-..++..+--+.|.+.-+.|...|
T Consensus 101 ~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 140 (226)
T 3zyq_A 101 VEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEG 140 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Confidence 4567888888888777767766654456666666666554
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.17 E-value=1.8e+02 Score=27.72 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=103.8
Q ss_pred CccccchhhhhhccCCHHHHHHHHHHHhcChhh-----hccCcchhHHHHHHH---HhhCHHHHHHHHHHH--HHHHHHH
Q 004857 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP-----LSLQMYGCRVIQKAL---EVIELHQKSQLVLEL--DGHVMRC 519 (727)
Q Consensus 450 D~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~-----La~h~yGSrVIQklI---e~as~eqr~~Lv~EL--~g~i~~L 519 (727)
++|+...+...++.+..+..+.+++.+..+-.. ...+..|.-.+..+. .....+-...|++.- ...+..+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 456666666677777776666666644332111 222355776666665 222222222222210 0011111
Q ss_pred h------hcccCchhhhHhhhcCChhHHHHHHHHhhhhHhhhccC--------------CCCchHHHHHHhhCCcHHHHH
Q 004857 520 V------RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH--------------PYGCRVIQRVLEHCSDEQQGQ 579 (727)
Q Consensus 520 ~------~D~~GNhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~h--------------k~GS~VLQk~Le~~~~~~~r~ 579 (727)
+ .|..|...+.........+..+.+++. +.-.. ..+ .+|.-.|........ .
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-----~ 153 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK--GADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-----P 153 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT--TCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC-----H
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcC-ccccccccCcccccccccCCCCHHHHHHHcCC-----H
Confidence 1 233777777777777776666666653 11111 111 356666666665543 2
Q ss_pred HHHHHHHH---H-HHHHhhCcCccHHHHHHHHcCCchh-----HHHHHHHHHHHHHHH--------hcCchHHHHHHHHH
Q 004857 580 CIVDEILE---S-AFALAQDQYGNYVTQHVLERGKSYE-----RTQILSKLAGKIVQM--------SQHKYASNVVEKCL 642 (727)
Q Consensus 580 ~Ll~eI~~---~-l~~La~Dq~GNyVVQ~lLe~~~~k~-----r~~II~~L~g~lveL--------s~~K~GS~VVEk~L 642 (727)
.+++.+++ . ...-..|..|.-.+......+.... ..++++.|..+=..+ ..++.|.-.+..+.
T Consensus 154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence 24444444 1 1123467788888888887655221 135666666655554 46777777777777
Q ss_pred HhCCHHHHHHHHH
Q 004857 643 EYGDTAERELLIE 655 (727)
Q Consensus 643 ~~as~k~Rk~IIk 655 (727)
..+..+..+.+++
T Consensus 234 ~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 234 KTGKIGIFQHIIR 246 (260)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 7776554444443
No 52
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.70 E-value=3.4e+02 Score=25.74 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCHHHHHHHH-HHHhcCCCChhHHHhhhcCCC-hHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhcCCChH
Q 004857 636 NVVEKCLEYGDTAERELLI-EEILGQSEENDNLLVMMKDQY-ANYVVQKILEKCNEKLRETLISRIRVHCDALKKYTYGK 713 (727)
Q Consensus 636 ~VVEk~L~~as~k~Rk~II-keLl~~~~~~e~L~~La~Dqy-GnyVVQklL~~~d~~~Rk~Ll~~Lk~~l~~L~~~~yGk 713 (727)
.+++.|++.|.......|. ++++ +.|..++...| | ...+.++|++|++.|..=-..+...+
T Consensus 72 ~LLd~~vkNCG~~Fh~evas~~Fl------~eL~kl~~~k~~~--------~~~~~~Vk~kil~li~~W~~~f~~~~--- 134 (171)
T 1juq_A 72 TVLEACMKNCGRRFHNEVGKFRFL------NELIKVVSPKYLG--------DRVSEKVKTKVIELLYSWTMALPEEA--- 134 (171)
T ss_dssp HHHHHHHHHSHHHHHHHHTSHHHH------HHHHHHHCCCCCC--------TTSCHHHHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHHHHHHcCHHHHHHHhhHHHH------HHHHHHhccccCC--------CCCCHHHHHHHHHHHHHHHHHcCCCc---
Confidence 5677777777665543332 2233 22444554332 1 12455677777776666555554432
Q ss_pred HHHHHHHHHHhcC
Q 004857 714 HIVARFEQLYGEG 726 (727)
Q Consensus 714 ~Vv~~Lekli~~g 726 (727)
.|.+.-+.|...|
T Consensus 135 ~i~~~y~~Lk~~G 147 (171)
T 1juq_A 135 KIKDAYHMLKRQG 147 (171)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 3555555554444
No 53
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.83 E-value=2.3e+02 Score=26.18 Aligned_cols=115 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred ccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHH--HHHhhcccC
Q 004857 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV--MRCVRDQNG 525 (727)
Q Consensus 448 ~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i--~~L~~D~~G 525 (727)
.+|..|.-.+.....++..+..+.+++. + ...-..+..|...+..++.....+ +++.|..+- ..-..+..|
T Consensus 20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g-~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g 92 (223)
T 2f8y_A 20 QTDRTGETALHLAARYSRSDAAKRLLEA--S-ADANIQDNMGRTPLHAAVSADAQG----VFQILIRNRATDLDARMHDG 92 (223)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHBTTSCTTCCCTTC
T ss_pred ccCCCCCchHHHHHHcCCHHHHHHHHHc--C-CCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCC
Confidence 3477888888888888888777777654 1 112234566666666666555443 333332211 111234556
Q ss_pred chhhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhC
Q 004857 526 NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHC 572 (727)
Q Consensus 526 NhVIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~ 572 (727)
...+.........+..+.+++.- ..--..+..|...+..+....
T Consensus 93 ~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~ 136 (223)
T 2f8y_A 93 TTPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVN 136 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHTT
T ss_pred CcHHHHHHHhCcHHHHHHHHHcC---CCCcCcCCCCCcHHHHHHHcC
Confidence 66666666655555555554421 111123455655555555443
No 54
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.56 E-value=1.5e+02 Score=27.49 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=24.0
Q ss_pred ccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhC
Q 004857 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501 (727)
Q Consensus 453 Gn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as 501 (727)
|+..+......+..+..+.+++.-. -.....+..|...+..+.....
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~ 48 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQA 48 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG--GGTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc--cccccCCCCCCCHHHHHHHcCC
Confidence 4555556666666666555554421 1112245566666655555444
No 55
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=20.34 E-value=3.6e+02 Score=25.64 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=13.3
Q ss_pred cCccccchhhhhhccCCHHHHHHHHH
Q 004857 449 TDVFGNYVIQKFFEHGSPDQRKELAE 474 (727)
Q Consensus 449 tD~fGn~VVQKLLe~gs~eqr~~Ii~ 474 (727)
++..|.-.+......+..+..+.+++
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~ 66 (282)
T 1oy3_D 41 QNDLGQTALHLAAILGEASTVEKLYA 66 (282)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 44555555555555555554444443
No 56
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.15 E-value=1.2e+02 Score=28.38 Aligned_cols=229 Identities=12% Similarity=0.002 Sum_probs=0.0
Q ss_pred ccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhcccCch
Q 004857 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527 (727)
Q Consensus 448 ~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe~as~eqr~~Lv~EL~g~i~~L~~D~~GNh 527 (727)
++|..|.-.+......+..+..+.+++. ...--..+..|...+..++.....+-...|++. ....-..+..|..
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t 79 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA---GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA---GALVDPKDAEGST 79 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCCCCCCTTSCC
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHc---CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC---CCCCCCCCCCCCc
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhHhhhccCCCCchHHHHHHhhCCcHHHHHHHHHHHHHH-HHHHhhCcCccHHHHHHH
Q 004857 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQRVLEHCSDEQQGQCIVDEILES-AFALAQDQYGNYVTQHVL 606 (727)
Q Consensus 528 VIQklLe~~~~e~~~~Ii~~L~~~l~~Ls~hk~GS~VLQk~Le~~~~~~~r~~Ll~eI~~~-l~~La~Dq~GNyVVQ~lL 606 (727)
.+...+.....+..+.+++ .+...--..+..|...+.........+ +++.+++. ...-..|..|...+....
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~-----~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 152 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLS--NGQMDVNCQDDGGWTPMIWATEYKHVD-----LVKLLLSKGSDINIRDNEENICLHWAA 152 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHT--TTCCCTTCCCTTSCCHHHHHHHTTCHH-----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh--CCCCCcccCCCCCCCHHHHHHHcCCHH-----HHHHHHHCCCCCCccCCCCCCHHHHHH
Q ss_pred HcCCchhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhCCHHHHHHHHHHHhcCCCChhHHHhhhcCCChHHHHHHHHhc
Q 004857 607 ERGKSYERTQILSKLAGKIVQMSQHKYASNVVEKCLEYGDTAERELLIEEILGQSEENDNLLVMMKDQYANYVVQKILEK 686 (727)
Q Consensus 607 e~~~~k~r~~II~~L~g~lveLs~~K~GS~VVEk~L~~as~k~Rk~IIkeLl~~~~~~e~L~~La~DqyGnyVVQklL~~ 686 (727)
..+..+..+.+++. ...--..+..|...+..+...+..+..+.+++.=..... .|..|.-.+..+...
T Consensus 153 ~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~---------~d~~g~t~l~~A~~~ 220 (237)
T 3b7b_A 153 FSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---------KNKEGETPLQCASLN 220 (237)
T ss_dssp HHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC---------CCTTSCCHHHHSCTT
T ss_pred HCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc---------cCCCCCCHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHH
Q 004857 687 CNEKLRETLISRIRV 701 (727)
Q Consensus 687 ~d~~~Rk~Ll~~Lk~ 701 (727)
........+++.|..
T Consensus 221 ~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 221 SQVWSALQMSKALQD 235 (237)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
No 57
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.05 E-value=5.1e+02 Score=23.78 Aligned_cols=78 Identities=13% Similarity=-0.067 Sum_probs=41.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHhhchhhhccCccccchhhhhhccCCHHHHHHHHHHHhcChhhhccCcchhHHHHHHHH
Q 004857 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE 498 (727)
Q Consensus 419 RvLQ~lLk~~t~Eqr~~If~EI~~~~~eL~tD~fGn~VVQKLLe~gs~eqr~~Ii~~L~G~v~~La~h~yGSrVIQklIe 498 (727)
..|..+...++.+..+.++++-.. ..-..+..|...+......+..+..+.+++. + ..--..+..|...+..+..
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g-~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQL--G-VPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGG--GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--T-CCSCCCCTTSCCHHHHHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchh--hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--C-CCCCCcCCCCCCHHHHHHH
Confidence 445556666666666555544221 1234567777777777777776666655543 1 1111234455555555554
Q ss_pred hhC
Q 004857 499 VIE 501 (727)
Q Consensus 499 ~as 501 (727)
...
T Consensus 83 ~~~ 85 (231)
T 3aji_A 83 AGX 85 (231)
T ss_dssp HTC
T ss_pred cCH
Confidence 443
Done!