BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004858
         (727 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NRX|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Non-Motor Microtubule Binding Protein
 pdb|3NRX|B Chain B, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Non-Motor Microtubule Binding Protein
          Length = 130

 Score = 34.7 bits (78), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 378 KDILEKIDKWLAACEEESW-----LEDYNRDENRYNAGRGSHLILKRAEKARSLVNK-LP 431
           K++ E + KW     EE+W      E    D NR+   RG +L+  + EK R+ + K LP
Sbjct: 13  KELFEGVQKW-----EETWRLFLEFERKASDPNRF-TNRGGNLL--KEEKQRAKLQKMLP 64

Query: 432 GMVETLASKTIAWETERGVEFLYDGVRLHSMLDE 465
            + E L ++   WE E    F+ +G +    + E
Sbjct: 65  KLEEELKARIELWEQEHSKAFMVNGQKFMEYVAE 98


>pdb|3NRY|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
           Prc1, A Conserved Microtubule Binding Protein
          Length = 130

 Score = 33.5 bits (75), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 378 KDILEKIDKWLAACEEESW-----LEDYNRDENRYNAGRGSHLILKRAEKARSLVNK-LP 431
           K++ E + KW     EE+W      E    D NR+   RG +L+  + EK R+ + K LP
Sbjct: 13  KELFEGVQKW-----EETWRLFLEFERKASDPNRF-TNRGGNLL--KEEKQRAKLQKXLP 64

Query: 432 GMVETLASKTIAWETERGVEFLYDGVRLHSMLDE 465
            + E L ++   WE E    F  +G +    + E
Sbjct: 65  KLEEELKARIELWEQEHSKAFXVNGQKFXEYVAE 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,268,148
Number of Sequences: 62578
Number of extensions: 724994
Number of successful extensions: 1817
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1804
Number of HSP's gapped (non-prelim): 31
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)